BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021698
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HE8|A Chain A, Structural Study Of Clostridium Thermocellum
Ribose-5-Phosphate Isomerase B
pdb|3HE8|B Chain B, Structural Study Of Clostridium Thermocellum
Ribose-5-Phosphate Isomerase B
pdb|3HEE|A Chain A, Structural Study Of Clostridium Thermocellum
Ribose-5-Phosphate Isomerase B And Ribose-5-Phosphate
pdb|3HEE|B Chain B, Structural Study Of Clostridium Thermocellum
Ribose-5-Phosphate Isomerase B And Ribose-5-Phosphate
Length = 149
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Query: 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGA-EVGRRVSSSDSSETTTR 71
+KI G+D G LK + L+ +V D GT S+ + G +V+ + S R
Sbjct: 1 MKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDR 60
Query: 72 GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
G+V CGTG+G++I ANK PG+ A C A +R N+ N+LA+ + A++I+
Sbjct: 61 GIVICGTGLGISIAANKVPGIRAAVCTNSYMARMSREHNDANILALGERVVGLDLALDIV 120
Query: 132 DTWLKTPFKAPCPAS 146
DTWLK F+ A+
Sbjct: 121 DTWLKAEFQGGRHAT 135
>pdb|3PH4|A Chain A, Clostridium Thermocellum Ribose-5-Phosphate Isomerase B
With D-Allose
pdb|3PH4|B Chain B, Clostridium Thermocellum Ribose-5-Phosphate Isomerase B
With D-Allose
pdb|3PH3|A Chain A, Clostridium Thermocellum Ribose-5-Phosphate Isomerase B
With D-Ribose
pdb|3PH3|B Chain B, Clostridium Thermocellum Ribose-5-Phosphate Isomerase B
With D-Ribose
Length = 169
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Query: 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGA-EVGRRVSSSDSSETTTR 71
+KI G+D G LK + L+ +V D GT S+ + G +V+ + S R
Sbjct: 21 MKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDR 80
Query: 72 GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
G+V CGTG+G++I ANK PG+ A C A +R N+ N+LA+ + A++I+
Sbjct: 81 GIVICGTGLGISIAANKVPGIRAAVCTNSYMARMSREHNDANILALGERVVGLDLALDIV 140
Query: 132 DTWLKTPFKAPCPAS 146
DTWLK F+ A+
Sbjct: 141 DTWLKAEFQGGRHAT 155
>pdb|1NN4|A Chain A, Structural Genomics, RpibALSB
pdb|1NN4|B Chain B, Structural Genomics, RpibALSB
pdb|1NN4|C Chain C, Structural Genomics, RpibALSB
pdb|1NN4|D Chain D, Structural Genomics, RpibALSB
Length = 162
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRRVSSSDSSET 68
KI G D G LK +V+HL ++V D GT +DY ++V V+ +
Sbjct: 16 KIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGE---- 71
Query: 69 TTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
G++ CGTGVG++I ANK G+ A C P A +R N+ NVLA E A
Sbjct: 72 VDGGILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQHNDTNVLAFGSRVVGLELAK 131
Query: 129 EILDTWLKTPFKA 141
I+D WL ++
Sbjct: 132 MIVDAWLGAQYEG 144
>pdb|2VVR|A Chain A, Crystal Structure Of The H99n Mutant Of Ribose-5-Phosphate
Isomerase B From E. Coli Soaked With Ribose 5-Phosphate
pdb|2VVR|B Chain B, Crystal Structure Of The H99n Mutant Of Ribose-5-Phosphate
Isomerase B From E. Coli Soaked With Ribose 5-Phosphate
pdb|2VVR|C Chain C, Crystal Structure Of The H99n Mutant Of Ribose-5-Phosphate
Isomerase B From E. Coli Soaked With Ribose 5-Phosphate
pdb|2VVR|D Chain D, Crystal Structure Of The H99n Mutant Of Ribose-5-Phosphate
Isomerase B From E. Coli Soaked With Ribose 5-Phosphate
pdb|2VVR|E Chain E, Crystal Structure Of The H99n Mutant Of Ribose-5-Phosphate
Isomerase B From E. Coli Soaked With Ribose 5-Phosphate
pdb|2VVR|F Chain F, Crystal Structure Of The H99n Mutant Of Ribose-5-Phosphate
Isomerase B From E. Coli Soaked With Ribose 5-Phosphate
Length = 149
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRRVSSSDSSET 68
KI G D G LK +V+HL ++V D GT +DY ++V V+ +
Sbjct: 3 KIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGE---- 58
Query: 69 TTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
G++ CGTGVG++I ANK G+ A C P A +R N+ NVLA E A
Sbjct: 59 VDGGILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQNNDTNVLAFGSRVVGLELAK 118
Query: 129 EILDTWLKTPFKA 141
I+D WL ++
Sbjct: 119 MIVDAWLGAQYEG 131
>pdb|3S5P|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase B Rpib
From Giardia Lamblia
pdb|3S5P|B Chain B, Crystal Structure Of Ribose-5-Phosphate Isomerase B Rpib
From Giardia Lamblia
Length = 166
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
Query: 5 ADAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIG----AEVGRRV 60
A P +K+ +D G +L+ L + +V DLGT S+ A++G
Sbjct: 14 AQTQGPGSMKVAFASDHGGRDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEA 73
Query: 61 SSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGM 120
+S ++ ++ CGTG+G++I ANK G+ C T DA R NN N LA+ G
Sbjct: 74 VTSGRADCC---ILVCGTGIGISIAANKMKGIRCALCSTEYDAEMARKHNNANALALGGR 130
Query: 121 STSKESAVEILDTWLKTPFK 140
+T E A IL +L T F+
Sbjct: 131 TTGPEVAASILSRFLSTNFE 150
>pdb|1O1X|A Chain A, Crystal Structure Of A Ribose 5-phosphate Isomerase Rpib
(tm1080) From Thermotoga Maritima At 1.90 A Resolution
Length = 155
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 1/142 (0%)
Query: 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGA-EVGRRVSSSDSSETTTR 71
+KI +D ELK+ + ++L I+VED GT S+ + ++V S S
Sbjct: 13 VKIAIASDHAAFELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILSNEADF 72
Query: 72 GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
G++ GTG+G +I AN+ G+ A CL P A RS NN N+L + G E A I+
Sbjct: 73 GILLXGTGLGXSIAANRYRGIRAALCLFPDXARLARSHNNANILVLPGRLIGAELAFWIV 132
Query: 132 DTWLKTPFKAPCPASGLKPWDE 153
DT+L TPF ++ DE
Sbjct: 133 DTFLSTPFDGGRHERRIRKIDE 154
>pdb|3K7O|A Chain A, Structure Of Type B Ribose 5-phosphate Isomerase From
Trypanosoma Cruzi
pdb|3K7O|B Chain B, Structure Of Type B Ribose 5-phosphate Isomerase From
Trypanosoma Cruzi
pdb|3K7S|A Chain A, Complex Of Trypanosoma Cruzi Ribose 5-Phosphate Isomerase
Type B With Ribose 5-Phosphate
pdb|3K7S|B Chain B, Complex Of Trypanosoma Cruzi Ribose 5-Phosphate Isomerase
Type B With Ribose 5-Phosphate
pdb|3K7S|C Chain C, Complex Of Trypanosoma Cruzi Ribose 5-Phosphate Isomerase
Type B With Ribose 5-Phosphate
pdb|3K7S|D Chain D, Complex Of Trypanosoma Cruzi Ribose 5-Phosphate Isomerase
Type B With Ribose 5-Phosphate
pdb|3K8C|A Chain A, Complex Of Trypanosoma Cruzi Ribose 5-Phosphate Isomerase
Type B With 4-Deoxy-4-Phospho-D-Erythronohydroxamic Acid
pdb|3K8C|B Chain B, Complex Of Trypanosoma Cruzi Ribose 5-Phosphate Isomerase
Type B With 4-Deoxy-4-Phospho-D-Erythronohydroxamic Acid
Length = 179
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 59 RVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVS 118
RV+ + + G++ACG+G+G++I ANK PGV A C A +R N+ N++ V
Sbjct: 72 RVAEMVARKEVEFGVLACGSGIGMSIAANKVPGVRAALCHDHYTAAMSRIHNDANIVCVG 131
Query: 119 GMSTSKESAVEILDTWLKTPF 139
+T E EI+ T+L+TPF
Sbjct: 132 ERTTGVEVIREIIITFLQTPF 152
>pdb|4EM8|A Chain A, The Structure Of Ribose 5-Phosphate Isomerase B From
Anaplasma Phagocytophilum
pdb|4EM8|B Chain B, The Structure Of Ribose 5-Phosphate Isomerase B From
Anaplasma Phagocytophilum
Length = 148
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 12/132 (9%)
Query: 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLG------TSDYYSIGAEVGRRVSSSDSSE 67
++ +D G EL+ L ++LR L +V D G + DY +V R VS
Sbjct: 9 RVFLSSDHAGVELRLFLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREVSD----- 63
Query: 68 TTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
T+ G++ CGTG+G++I AN++ + A C + A +R N+ NVL ++A
Sbjct: 64 -TSFGVLICGTGIGMSIAANRHKNIRAALCSSTMLAKLSREHNDANVLCFGSRYIDPDTA 122
Query: 128 VEILDTWLKTPF 139
+L T++ T F
Sbjct: 123 QSVLYTFMTTAF 134
>pdb|3K7P|A Chain A, Structure Of Mutant Of Ribose 5-phosphate Isomerase Type B
From Trypanosoma Cruzi.
pdb|3K7P|B Chain B, Structure Of Mutant Of Ribose 5-phosphate Isomerase Type B
From Trypanosoma Cruzi
Length = 179
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 59 RVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVS 118
RV+ + + G++A G+G+G++I ANK PGV A C A +R N+ N++ V
Sbjct: 72 RVAEMVARKEVEFGVLAAGSGIGMSIAANKVPGVRAALCHDHYTAAMSRIHNDANIVCVG 131
Query: 119 GMSTSKESAVEILDTWLKTPF 139
+T E EI+ T+L+TPF
Sbjct: 132 ERTTGVEVIREIIITFLQTPF 152
>pdb|3M1P|A Chain A, Structure Of Ribose 5-Phosphate Isomerase Type B From
Trypanosoma Cruzi, Soaked With Allose-6-Phosphate
pdb|3M1P|B Chain B, Structure Of Ribose 5-Phosphate Isomerase Type B From
Trypanosoma Cruzi, Soaked With Allose-6-Phosphate
Length = 153
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 59 RVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVS 118
RV+ + + G++A G+G+G++I ANK PGV A C A +R N+ N++ V
Sbjct: 52 RVAEMVARKEVEFGVLAAGSGIGMSIAANKVPGVRAALCHDHYTAAMSRIHNDANIVCVG 111
Query: 119 GMSTSKESAVEILDTWLKTPF 139
+T E EI+ T+L+TPF
Sbjct: 112 ERTTGVEVIREIIITFLQTPF 132
>pdb|2VVO|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With Alpha D-Allose 6-
Phosphate
pdb|2VVO|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With Alpha D-Allose 6-
Phosphate
pdb|2VVO|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With Alpha D-Allose 6-
Phosphate
pdb|2VVO|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With Alpha D-Allose 6-
Phosphate
pdb|2VVO|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With Alpha D-Allose 6-
Phosphate
pdb|2VVP|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With Its Substrates
Ribose 5-Phosphate And Ribulose 5-Phosphate
pdb|2VVP|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With Its Substrates
Ribose 5-Phosphate And Ribulose 5-Phosphate
pdb|2VVP|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With Its Substrates
Ribose 5-Phosphate And Ribulose 5-Phosphate
pdb|2VVP|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With Its Substrates
Ribose 5-Phosphate And Ribulose 5-Phosphate
pdb|2VVP|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With Its Substrates
Ribose 5-Phosphate And Ribulose 5-Phosphate
pdb|2VVQ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With The Inhibitor 5-
Deoxy-5-Phospho-D-Ribonate
pdb|2VVQ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With The Inhibitor 5-
Deoxy-5-Phospho-D-Ribonate
pdb|2VVQ|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With The Inhibitor 5-
Deoxy-5-Phospho-D-Ribonate
pdb|2VVQ|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With The Inhibitor 5-
Deoxy-5-Phospho-D-Ribonate
pdb|2VVQ|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5-
Phosphate Isomerase B In Complex With The Inhibitor 5-
Deoxy-5-Phospho-D-Ribonate
Length = 162
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 14/135 (10%)
Query: 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDY--------YSIGAEVGRRVSSSD 64
+++ GAD G ELK ++ HL+ + D G Y + I A ++
Sbjct: 4 MRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAA------ATRT 57
Query: 65 SSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSK 124
++ + G+V G+G G I ANK PG + A R NN ++ + G +
Sbjct: 58 VADPGSLGIVLGGSGNGEQIAANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTV 117
Query: 125 ESAVEILDTWLKTPF 139
A+ I+D ++ TP+
Sbjct: 118 AEALAIVDAFVTTPW 132
>pdb|1USL|A Chain A, Structure Of Mycobacterium Tuberculosis Ribose-5-phosphate
Isomerase, Rpib, Rv2465c, Complexed With Phosphate.
pdb|1USL|B Chain B, Structure Of Mycobacterium Tuberculosis Ribose-5-phosphate
Isomerase, Rpib, Rv2465c, Complexed With Phosphate.
pdb|1USL|C Chain C, Structure Of Mycobacterium Tuberculosis Ribose-5-phosphate
Isomerase, Rpib, Rv2465c, Complexed With Phosphate.
pdb|1USL|D Chain D, Structure Of Mycobacterium Tuberculosis Ribose-5-phosphate
Isomerase, Rpib, Rv2465c, Complexed With Phosphate.
pdb|1USL|E Chain E, Structure Of Mycobacterium Tuberculosis Ribose-5-phosphate
Isomerase, Rpib, Rv2465c, Complexed With Phosphate
Length = 170
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 14/135 (10%)
Query: 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDY--------YSIGAEVGRRVSSSD 64
+++ GAD G ELK ++ HL+ + D G Y + I A ++
Sbjct: 12 MRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAA------ATRT 65
Query: 65 SSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSK 124
++ + G+V G+G G I ANK PG + A R NN ++ + G +
Sbjct: 66 VADPGSLGIVLGGSGNGEQIAANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTV 125
Query: 125 ESAVEILDTWLKTPF 139
A+ I+D ++ TP+
Sbjct: 126 AEALAIVDAFVTTPW 140
>pdb|2BES|A Chain A, Structure Of Mycobacterium Tuberculosis Ribose-5-Phosphate
Isomerase, Rpib, Rv2465c, In Complex With 4-Phospho-D-
Erythronohydroxamic Acid.
pdb|2BES|B Chain B, Structure Of Mycobacterium Tuberculosis Ribose-5-Phosphate
Isomerase, Rpib, Rv2465c, In Complex With 4-Phospho-D-
Erythronohydroxamic Acid.
pdb|2BES|C Chain C, Structure Of Mycobacterium Tuberculosis Ribose-5-Phosphate
Isomerase, Rpib, Rv2465c, In Complex With 4-Phospho-D-
Erythronohydroxamic Acid.
pdb|2BES|D Chain D, Structure Of Mycobacterium Tuberculosis Ribose-5-Phosphate
Isomerase, Rpib, Rv2465c, In Complex With 4-Phospho-D-
Erythronohydroxamic Acid.
pdb|2BES|E Chain E, Structure Of Mycobacterium Tuberculosis Ribose-5-Phosphate
Isomerase, Rpib, Rv2465c, In Complex With 4-Phospho-D-
Erythronohydroxamic Acid.
pdb|2BET|A Chain A, Structure Of Mycobacterium Tuberculosis Ribose-5-Phosphate
Isomerase, Rpib, Rv2465c, In Complex With 4-Phospho-D-
Erythronate.
pdb|2BET|B Chain B, Structure Of Mycobacterium Tuberculosis Ribose-5-Phosphate
Isomerase, Rpib, Rv2465c, In Complex With 4-Phospho-D-
Erythronate.
pdb|2BET|C Chain C, Structure Of Mycobacterium Tuberculosis Ribose-5-Phosphate
Isomerase, Rpib, Rv2465c, In Complex With 4-Phospho-D-
Erythronate.
pdb|2BET|D Chain D, Structure Of Mycobacterium Tuberculosis Ribose-5-Phosphate
Isomerase, Rpib, Rv2465c, In Complex With 4-Phospho-D-
Erythronate.
pdb|2BET|E Chain E, Structure Of Mycobacterium Tuberculosis Ribose-5-Phosphate
Isomerase, Rpib, Rv2465c, In Complex With 4-Phospho-D-
Erythronate
Length = 172
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 14/135 (10%)
Query: 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDY--------YSIGAEVGRRVSSSD 64
+++ GAD G ELK ++ HL+ + D G Y + I A ++
Sbjct: 14 MRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAA------ATRT 67
Query: 65 SSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSK 124
++ + G+V G+G G I ANK PG + A R NN ++ + G +
Sbjct: 68 VADPGSLGIVLGGSGNGEQIAANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTV 127
Query: 125 ESAVEILDTWLKTPF 139
A+ I+D ++ TP+
Sbjct: 128 AEALAIVDAFVTTPW 142
>pdb|3SDW|A Chain A, Crystal Structure Of A Ribose-5-Phosphate Isomerase B Rpib
From Coccidioides Immitis Bound To Phosphate
pdb|3SGW|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase B Rpib
From Coccidioides Immitis Semi-Covalently Bound To
Malonic Acid
Length = 184
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 56/136 (41%), Gaps = 12/136 (8%)
Query: 12 PLKIIAGADSFGAELKDALVSHL--RSLNIDVEDLG---TSD---YYSIGAEVGRRVSSS 63
PL++ D G K+AL +HL L + D+G T+D Y + + + +
Sbjct: 29 PLRLAIACDDAGVSYKEALKAHLSDNPLVSSITDVGVTSTTDKTAYPHVAIQAAQLIKDG 88
Query: 64 DSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTS 123
R L+ CGTG+GVAI ANK PG+ A T N+ VL
Sbjct: 89 K----VDRALMICGTGLGVAISANKVPGIRAVTAHDTFSVERAILSNDAQVLCFGQRVIG 144
Query: 124 KESAVEILDTWLKTPF 139
E A + WL F
Sbjct: 145 IELAKRLAGEWLTYRF 160
>pdb|3QD5|A Chain A, Crystal Structure Of A Putative Ribose-5-Phosphate
Isomerase From Coccidioides Immitis Solved By Combined
Iodide Ion Sad And Mr
pdb|3QD5|B Chain B, Crystal Structure Of A Putative Ribose-5-Phosphate
Isomerase From Coccidioides Immitis Solved By Combined
Iodide Ion Sad And Mr
Length = 167
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 53/136 (38%), Gaps = 12/136 (8%)
Query: 12 PLKIIAGADSFGAELKDALVSHL--RSLNIDVEDLGTSD------YYSIGAEVGRRVSSS 63
PL++ D G K+AL +HL L + D+G + Y + + + +
Sbjct: 12 PLRLAIACDDAGVSYKEALKAHLSDNPLVSSITDVGVTSTTDKTAYPHVAIQAAQLIKDG 71
Query: 64 DSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTS 123
R L+ GTG+GVAI ANK PG+ A T N+ VL
Sbjct: 72 K----VDRALMIXGTGLGVAISANKVPGIRAVTAHDTFSVERAILSNDAQVLCFGQRVIG 127
Query: 124 KESAVEILDTWLKTPF 139
E A + WL F
Sbjct: 128 IELAKRLAGEWLTYRF 143
>pdb|3ONO|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase
Lacab_rpib From Vibrio Parahaemolyticus
Length = 214
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 37 LNIDVEDLGTSD---YYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVF 93
L DV ++G +D ++ +G S +S+ + CGTG G N +PGV
Sbjct: 32 LGHDVFNVGXTDENDHHLTYIHLGIXASILLNSKAVDFVVTGCGTGQGALXSCNLHPGVV 91
Query: 94 ATTCLTPADALNTRSINNCNVLAVS 118
CL P+DA INN N ++++
Sbjct: 92 CGYCLEPSDAFLFNQINNGNAISLA 116
>pdb|2PPW|A Chain A, The Crystal Structure Of Uncharacterized Ribose
5-Phosphate Isomerase Rpib From Streptococcus Pneumoniae
pdb|2PPW|B Chain B, The Crystal Structure Of Uncharacterized Ribose
5-Phosphate Isomerase Rpib From Streptococcus Pneumoniae
Length = 216
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 73 LVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAV 117
+ CGTGVG + N PGV + P DA IN N L++
Sbjct: 72 VTGCGTGVGAXLALNSFPGVVCGLAVDPTDAYLYSQINGGNALSI 116
>pdb|4GEK|A Chain A, Crystal Structure Of Wild-Type Cmoa From E.Coli
pdb|4GEK|G Chain G, Crystal Structure Of Wild-Type Cmoa From E.Coli
Length = 261
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 5/113 (4%)
Query: 197 PVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERF- 255
PV++I G I E+ + ++ F +EP+ + +G L E+F
Sbjct: 124 PVDVIEGDIRDIAIENASMVVLNFTLQFLEPSERQALLDK--IYQGLNPGGALVLSEKFS 181
Query: 256 --DLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLETAKKAVEK 306
D VG+ LF D R Y E E K ++ + +ET K + K
Sbjct: 182 FEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHK 234
>pdb|1Y3T|A Chain A, Crystal Structure Of Yxag, A Dioxygenase From Bacillus
Subtilis
pdb|1Y3T|B Chain B, Crystal Structure Of Yxag, A Dioxygenase From Bacillus
Subtilis
Length = 337
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 229 HHHTFGHD-LVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
H+H + + LEG+ ++W T G+ L GD+L PA VH +
Sbjct: 234 HYHEYHTETFYCLEGQMTMW--TDGQEIQLNPGDFLHVPANTVHSYR 278
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 223 GSVEPAHHHTFGHD-LVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
G P H H H+ ++VL+GK + GER+ L GDY PAG H +
Sbjct: 56 GDAFPLHVHKDTHEGILVLDGKLELT--LDGERYLLISGDYANIPAGTPHSYR 106
>pdb|3HT2|A Chain A, Zink Containing Polyketide Cyclase Remf From Streptomyces
Resistomycificus
pdb|3HT2|C Chain C, Zink Containing Polyketide Cyclase Remf From Streptomyces
Resistomycificus
Length = 145
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 227 PAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVH 271
P H H + H++ VLEG + +G ++ G+ +F P G+ H
Sbjct: 53 PPHFHEWEHEIYVLEGSXGLVLPDQGRTEEVGPGEAIFIPRGEPH 97
>pdb|3HT1|A Chain A, 1.2a Structure Of The Polyketide Cyclase Remf From
Streptomyces Resistomycificus
Length = 145
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 227 PAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVH 271
P H H + H++ VLEG + +G ++ G+ +F P G+ H
Sbjct: 53 PPHFHEWEHEIYVLEGSMGLVLPDQGRTEEVGPGEAIFIPRGEPH 97
>pdb|3NST|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase G106a
Mutant From Pseudoaminobacter Salicylatoxidans
pdb|3NVC|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase G106a
Mutant From Pseudoaminobacter Salicylatoxidans In
Complex With Salicylate
pdb|3NW4|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase G106a
Mutant From Pseudoaminobacter Salicylatoxidans In
Complex With Gentisate
Length = 368
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 203 GGSMKIIRESPT--SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVG 260
GG+ I SPT +AI P H H+ V+EG+ VW + G+ ++ G
Sbjct: 94 GGNAYI---SPTMWAAIQYLGPRETAPEHRHSQNAFRFVVEGE-GVWTVVNGDPVRMSRG 149
Query: 261 DYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLETA 300
D L TP H + +T+ + W D+ F + ++
Sbjct: 150 DLLLTPGWCFH--GHMNDTDQPMAWIDGLDIPFSQQMDVG 187
>pdb|3O14|A Chain A, Crystal Structure Of An Anti-Ecfsigma Factor, Chrr
(Maqu_0586) From Marinobacter Aquaeolei Vt8 At 1.70 A
Resolution
pdb|3O14|B Chain B, Crystal Structure Of An Anti-Ecfsigma Factor, Chrr
(Maqu_0586) From Marinobacter Aquaeolei Vt8 At 1.70 A
Resolution
Length = 223
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 215 SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
++IVR+ GS AH H G + +VL+G + + E D G Y+ P H
Sbjct: 45 TSIVRYAPGSRFSAHTHDGGEEFIVLDG------VFQDEHGDYPAGTYVRNPPTTSHVPG 98
Query: 275 YYEETEFFIK 284
E F+K
Sbjct: 99 SAEGCTIFVK 108
>pdb|2H0V|A Chain A, Crystal Structure Of A Putative Quercetin 2,3-dioxygenase
(yxag, Bsu39980) From Bacillus Subtilis At 2.60 A
Resolution
pdb|2H0V|B Chain B, Crystal Structure Of A Putative Quercetin 2,3-dioxygenase
(yxag, Bsu39980) From Bacillus Subtilis At 2.60 A
Resolution
Length = 338
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 229 HHHTFGHD-LVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
H+H + + LEG+ + W T G+ L GD+L PA VH +
Sbjct: 235 HYHEYHTETFYCLEGQXTXW--TDGQEIQLNPGDFLHVPANTVHSYR 279
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 223 GSVEPAHHHTFGHD-LVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
G P H H H+ ++VL+GK + GER+ L GDY PAG H +
Sbjct: 57 GDAFPLHVHKDTHEGILVLDGKLELT--LDGERYLLISGDYANIPAGTPHSYR 107
>pdb|4FAG|A Chain A, Crystal Structure Of The Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans W104y Mutant In
Complex With Gentisate
pdb|4FBF|A Chain A, Crystal Structure Of The Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans W104y Mutant
Length = 367
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 227 PAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD 286
P H H+ V+EG+ VW + G+ ++ GD L TP H + +T+ + W
Sbjct: 117 PEHRHSQNAFRFVVEGE-GVWTVVNGDPVRMSRGDLLLTPGWCFH--GHMNDTDQPMAWI 173
Query: 287 GRWDMFFDEDLETA 300
D+ F + ++
Sbjct: 174 DGLDIPFSQQMDVG 187
>pdb|2PHD|A Chain A, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|2PHD|B Chain B, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|2PHD|C Chain C, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|2PHD|D Chain D, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|3NJZ|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans Adducts With
Salicylate
pdb|3NKT|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans Adducts With
Naphthoate
pdb|3NL1|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans Adducts With
Gentisate
Length = 368
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 203 GGSMKIIRESPT--SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVG 260
GG+ I SPT + I P H H+ V+EG+ VW + G+ ++ G
Sbjct: 94 GGNAYI---SPTMWAGIQYLGPRETAPEHRHSQNAFRFVVEGE-GVWTVVNGDPVRMSRG 149
Query: 261 DYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLETA 300
D L TP H + +T+ + W D+ F + ++
Sbjct: 150 DLLLTPGWCFH--GHMNDTDQPMAWIDGLDIPFSQQMDVG 187
>pdb|4FAH|A Chain A, Crystal Structure Of The Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans A85h Mutant
Length = 367
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 227 PAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD 286
P H H+ V+EG+ VW + G+ ++ GD L TP H + +T+ + W
Sbjct: 117 PEHRHSQNAFRFVVEGE-GVWTVVNGDPVRMSRGDLLLTPGWCFH--GHMNDTDQPMAWI 173
Query: 287 GRWDMFFDEDLETA 300
D+ F + ++
Sbjct: 174 DGLDIPFSQQMDVG 187
>pdb|3I3W|A Chain A, Structure Of A Phosphoglucosamine Mutase From
Francisella Tularensis
pdb|3I3W|B Chain B, Structure Of A Phosphoglucosamine Mutase From
Francisella Tularensis
Length = 443
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 11 HPLKIIAGAD--SFGAELKDALVSHLRSLNIDVEDLGT 46
+P +I G D S G LK ALVS L + IDV DLG
Sbjct: 40 YPKFVIVGQDTRSSGGFLKFALVSGLNAAGIDVLDLGV 77
>pdb|3O1H|A Chain A, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Presence Of Tmao
pdb|3O1I|A Chain A, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Ligand
pdb|3O1I|B Chain B, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Ligand
pdb|3O1J|A Chain A, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Isopropanol
pdb|3O1J|B Chain B, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Isopropanol
Length = 277
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 18 GADSFGAELKDALVSHLRSLNIDVEDLGTSDYYS--IGAEVGRRVSS----SDSSETTTR 71
G +SF ++L DAL S+++++ ++ +LG + + E+ RV S+ E TR
Sbjct: 57 GGESFDSKLLDALESNVQNVINNLAELGVTVERKLWLAKEIDTRVEEMRLLSEELEQLTR 116
Query: 72 GLVACGTGVGVA--------IFANKNPGVF-ATTCLTPADALNTRSINNCNVLAVSGMST 122
V + + VA + ANK V+ A L D T ++ ++LA ++
Sbjct: 117 TQVQNTSTIAVANVTHIYDLLEANKKDQVYQALDALVEVDLDLTERLHELHLLAFKMLNQ 176
Query: 123 SKES 126
+E+
Sbjct: 177 IEEA 180
>pdb|2D40|A Chain A, Crystal Structure Of Z3393 From Escherichia Coli O157:h7
pdb|2D40|B Chain B, Crystal Structure Of Z3393 From Escherichia Coli O157:h7
pdb|2D40|C Chain C, Crystal Structure Of Z3393 From Escherichia Coli O157:h7
pdb|2D40|D Chain D, Crystal Structure Of Z3393 From Escherichia Coli O157:h7
Length = 354
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 223 GSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVH 271
G V P+H H ++EGK + + GER GD++ TP H
Sbjct: 110 GEVAPSHRHNQSALRFIVEGKGA-FTAVDGERTPXNEGDFILTPQWRWH 157
>pdb|3I9Y|A Chain A, Crystal Structure Of The V. Parahaemolyticus Histidine
Kinase Sensor Tors Sensor Domain
Length = 276
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 18 GADSFGAELKDALVSHLRSLNIDVEDLGTSDYYS--IGAEVGRRVSS----SDSSETTTR 71
G +SF ++L DAL S+++++ ++ +LG + + E+ RV S+ E TR
Sbjct: 57 GGESFDSKLLDALESNVQNVINNLAELGVTVERKLWLAKEIDTRVEEMRLLSEELEQLTR 116
Query: 72 GLVACGTGVGVA--------IFANKNPGVF-ATTCLTPADALNTRSINNCNVLAVSGMST 122
V + + VA + ANK V+ A L D T ++ ++LA ++
Sbjct: 117 TQVQNTSTIAVANVTHIYDLLEANKKDQVYQALDALVEVDLDLTERLHELHLLAFKMLNQ 176
Query: 123 SKES 126
+E+
Sbjct: 177 IEEA 180
>pdb|2UY9|A Chain A, E162a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 209 IRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNL-TKGERF--DLTVGDYLFT 265
I E+ S +R K G++ H H ++ G V + KG F D+ GD +
Sbjct: 75 ISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYF 134
Query: 266 PAGDVHRVKYYEE-TEFFIKWD 286
P+G H ++ EE EF + +D
Sbjct: 135 PSGLPHSIQALEEGAEFLLVFD 156
>pdb|2V09|A Chain A, Sens161-164dssn Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 385
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 209 IRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNL-TKGERF--DLTVGDYLFT 265
I E+ S +R K G++ H H ++ G V + KG F D+ GD +
Sbjct: 75 ISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYF 134
Query: 266 PAGDVHRVKYYEE-TEFFIKWD 286
P+G H ++ EE EF + +D
Sbjct: 135 PSGLPHSIQALEEGAEFLLVFD 156
>pdb|2UYB|A Chain A, S161a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 209 IRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNL-TKGERF--DLTVGDYLFT 265
I E+ S +R K G++ H H ++ G V + KG F D+ GD +
Sbjct: 75 ISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYF 134
Query: 266 PAGDVHRVKYYEE-TEFFIKWD 286
P+G H ++ EE EF + +D
Sbjct: 135 PSGLPHSIQALEEGAEFLLVFD 156
>pdb|1L3J|A Chain A, Crystal Structure Of Oxalate Decarboxylase Formate Complex
pdb|1UW8|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 209 IRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNL-TKGERF--DLTVGDYLFT 265
I E+ S +R K G++ H H ++ G V + KG F D+ GD +
Sbjct: 75 ISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYF 134
Query: 266 PAGDVHRVKYYEE-TEFFIKWD 286
P+G H ++ EE EF + +D
Sbjct: 135 PSGLPHSIQALEEGAEFLLVFD 156
>pdb|2UYA|A Chain A, Del162-163 Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 383
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 209 IRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNL-TKGERF--DLTVGDYLFT 265
I E+ S +R K G++ H H ++ G V + KG F D+ GD +
Sbjct: 75 ISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYF 134
Query: 266 PAGDVHRVKYYEE-TEFFIKWD 286
P+G H ++ EE EF + +D
Sbjct: 135 PSGLPHSIQALEEGAEFLLVFD 156
>pdb|3S0M|A Chain A, A Structural Element That Modulates Proton-Coupled
Electron Transfer In Oxalate Decarboxylase
Length = 377
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 209 IRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNL-TKGERF--DLTVGDYLFT 265
I E+ S +R K G++ H H ++ G V + KG F D+ GD +
Sbjct: 70 ISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYF 129
Query: 266 PAGDVHRVKYYEE-TEFFIKWD 286
P+G H ++ EE EF + +D
Sbjct: 130 PSGLPHSIQALEEGAEFLLVFD 151
>pdb|2UY8|A Chain A, R92a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 209 IRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNL-TKGERF--DLTVGDYLFT 265
I E+ S +R K G++ H H ++ G V + KG F D+ GD +
Sbjct: 75 ISENLASVNMRLKPGAIAELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYF 134
Query: 266 PAGDVHRVKYYEE-TEFFIKWD 286
P+G H ++ EE EF + +D
Sbjct: 135 PSGLPHSIQALEEGAEFLLVFD 156
>pdb|2EEI|A Chain A, Solution Structure Of Second Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 106
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 232 TFGHDLVVLEGKKSVW--NLTK---GERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD 286
++G L ++GKK V+ ++T R + D+L G+ +EE +K
Sbjct: 20 SYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKS 79
Query: 287 GRWDMFFDEDLETAKKAVEKETA 309
G MF D ET K+ VE+++
Sbjct: 80 GSRVMFLLVDKETDKRHVEQKSG 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,632,265
Number of Sequences: 62578
Number of extensions: 411945
Number of successful extensions: 1468
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1430
Number of HSP's gapped (non-prelim): 50
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)