Query 021698
Match_columns 309
No_of_seqs 334 out of 2405
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:59:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021698.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021698hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12613 galactose-6-phosphate 100.0 9.6E-57 2.1E-61 377.8 15.9 137 13-157 1-139 (141)
2 TIGR01118 lacA galactose-6-pho 100.0 9.4E-57 2E-61 377.8 15.6 137 13-157 1-140 (141)
3 PRK08621 galactose-6-phosphate 100.0 1.5E-56 3.2E-61 377.1 16.0 137 13-157 1-140 (142)
4 PRK05571 ribose-5-phosphate is 100.0 7.4E-56 1.6E-60 376.1 16.0 138 13-158 1-144 (148)
5 PRK08622 galactose-6-phosphate 100.0 4.2E-55 9.2E-60 377.6 16.0 141 13-160 1-146 (171)
6 PTZ00215 ribose 5-phosphate is 100.0 5.4E-55 1.2E-59 371.7 16.3 140 11-158 1-147 (151)
7 TIGR01119 lacB galactose-6-pho 100.0 6.4E-55 1.4E-59 376.8 16.3 141 13-160 1-146 (171)
8 TIGR01120 rpiB ribose 5-phosph 100.0 6.3E-55 1.4E-59 368.4 15.6 136 14-157 1-141 (143)
9 PRK12615 galactose-6-phosphate 100.0 1.3E-54 2.8E-59 375.0 16.1 139 13-158 1-144 (171)
10 TIGR02133 RPI_actino ribose 5- 100.0 4.2E-54 9.2E-59 365.8 16.0 139 13-158 1-145 (148)
11 TIGR00689 rpiB_lacA_lacB sugar 100.0 3.9E-54 8.4E-59 364.0 15.4 136 15-158 1-141 (144)
12 COG0698 RpiB Ribose 5-phosphat 100.0 1.9E-53 4.1E-58 359.5 15.2 142 13-161 1-148 (151)
13 PF02502 LacAB_rpiB: Ribose/Ga 100.0 9.9E-54 2.1E-58 360.8 9.5 134 14-155 1-139 (140)
14 PRK09273 hypothetical protein; 100.0 9.9E-45 2.1E-49 321.2 15.1 137 13-153 1-152 (211)
15 PF07883 Cupin_2: Cupin domain 99.4 6.9E-13 1.5E-17 97.9 9.1 67 217-285 2-69 (71)
16 PRK09943 DNA-binding transcrip 99.4 5.6E-12 1.2E-16 111.1 14.8 140 128-286 34-179 (185)
17 PRK13290 ectC L-ectoine syntha 99.2 1.7E-10 3.7E-15 96.0 13.5 67 216-284 38-106 (125)
18 COG0662 {ManC} Mannose-6-phosp 99.2 1.3E-10 2.8E-15 96.7 11.5 84 198-283 19-105 (127)
19 COG1917 Uncharacterized conser 99.2 5.6E-11 1.2E-15 98.8 9.3 63 216-280 46-109 (131)
20 TIGR01479 GMP_PMI mannose-1-ph 99.1 1.1E-09 2.4E-14 109.7 12.5 91 198-290 359-452 (468)
21 PF01050 MannoseP_isomer: Mann 99.1 1.6E-09 3.5E-14 93.0 11.7 85 199-285 47-134 (151)
22 PRK15460 cpsB mannose-1-phosph 99.1 1.2E-09 2.6E-14 109.5 11.9 90 199-290 369-461 (478)
23 PF12973 Cupin_7: ChrR Cupin-l 99.0 2.9E-09 6.2E-14 83.4 10.3 79 200-284 6-89 (91)
24 TIGR03214 ura-cupin putative a 99.0 3.3E-09 7.2E-14 98.7 10.5 65 216-282 182-247 (260)
25 smart00835 Cupin_1 Cupin. This 98.9 7.8E-09 1.7E-13 87.7 11.0 67 216-284 33-106 (146)
26 PRK11171 hypothetical protein; 98.9 4E-09 8.7E-14 98.4 10.0 65 216-282 187-252 (266)
27 TIGR03404 bicupin_oxalic bicup 98.9 7.9E-09 1.7E-13 100.6 11.9 83 199-281 224-317 (367)
28 COG3837 Uncharacterized conser 98.9 8.4E-09 1.8E-13 87.9 9.0 70 216-287 45-118 (161)
29 PRK11171 hypothetical protein; 98.9 2.5E-08 5.4E-13 93.1 12.3 69 216-286 64-134 (266)
30 TIGR03214 ura-cupin putative a 98.9 1.5E-08 3.3E-13 94.2 10.8 69 216-286 61-131 (260)
31 TIGR03404 bicupin_oxalic bicup 98.8 6E-08 1.3E-12 94.4 13.5 68 216-283 70-141 (367)
32 TIGR03037 anthran_nbaC 3-hydro 98.8 3.8E-08 8.2E-13 84.8 10.0 68 217-284 31-101 (159)
33 PRK13264 3-hydroxyanthranilate 98.8 5.3E-08 1.1E-12 85.2 10.3 64 221-284 42-107 (177)
34 PF00190 Cupin_1: Cupin; Inte 98.7 1.9E-07 4.1E-12 79.0 12.0 62 216-277 37-108 (144)
35 PF02311 AraC_binding: AraC-li 98.7 4.6E-08 1E-12 79.1 7.9 58 222-281 12-69 (136)
36 COG4101 Predicted mannose-6-ph 98.7 4.2E-08 9.1E-13 80.0 7.2 67 216-282 49-117 (142)
37 PRK04190 glucose-6-phosphate i 98.6 2.3E-07 5E-12 82.6 10.1 65 216-282 71-149 (191)
38 PF02041 Auxin_BP: Auxin bindi 98.6 3.1E-07 6.8E-12 77.7 8.3 81 216-296 47-138 (167)
39 COG2140 Thermophilic glucose-6 98.5 1.1E-06 2.4E-11 78.6 10.0 67 216-282 83-155 (209)
40 PRK15457 ethanolamine utilizat 98.5 4.8E-06 1E-10 75.6 14.1 71 216-290 160-231 (233)
41 PRK10371 DNA-binding transcrip 98.4 9E-07 2E-11 83.8 7.5 62 217-280 30-91 (302)
42 TIGR02451 anti_sig_ChrR anti-s 98.4 1.5E-06 3.2E-11 78.8 8.4 83 202-290 113-200 (215)
43 PRK13501 transcriptional activ 98.2 4.5E-06 9.8E-11 78.0 7.9 57 222-280 27-83 (290)
44 PRK10296 DNA-binding transcrip 98.2 9E-06 2E-10 75.4 8.9 52 223-276 33-84 (278)
45 PRK13500 transcriptional activ 98.1 9E-06 2E-10 77.2 8.0 54 224-279 59-112 (312)
46 PRK13502 transcriptional activ 98.1 1.2E-05 2.5E-10 74.7 7.8 57 221-279 26-82 (282)
47 COG3257 GlxB Uncharacterized p 98.1 2.4E-05 5.2E-10 70.3 9.3 69 216-286 64-134 (264)
48 PF11699 CENP-C_C: Mif2/CENP-C 98.0 5.4E-05 1.2E-09 58.9 9.6 67 216-284 15-82 (85)
49 TIGR02297 HpaA 4-hydroxyphenyl 98.0 1.4E-05 2.9E-10 74.3 7.3 55 223-279 33-88 (287)
50 PLN00212 glutelin; Provisional 98.0 4.8E-05 1E-09 76.6 10.3 67 216-282 83-177 (493)
51 PF14499 DUF4437: Domain of un 97.9 4.9E-05 1.1E-09 70.4 8.9 74 215-292 38-116 (251)
52 PRK13503 transcriptional activ 97.9 1.4E-05 3E-10 73.8 5.3 55 222-278 24-78 (278)
53 TIGR02272 gentisate_1_2 gentis 97.8 5.6E-05 1.2E-09 72.8 8.1 66 216-282 84-149 (335)
54 PF06052 3-HAO: 3-hydroxyanthr 97.7 0.00096 2.1E-08 56.9 12.2 69 216-284 36-106 (151)
55 PF14499 DUF4437: Domain of un 97.7 9.4E-05 2E-09 68.5 6.3 103 189-291 138-250 (251)
56 TIGR02272 gentisate_1_2 gentis 97.6 0.00022 4.7E-09 68.8 8.8 66 217-284 254-319 (335)
57 PF03079 ARD: ARD/ARD' family; 97.6 0.00028 6.1E-09 61.0 8.5 54 225-278 84-140 (157)
58 PF06249 EutQ: Ethanolamine ut 97.6 0.0003 6.5E-09 60.4 8.2 70 216-290 80-151 (152)
59 PF05523 FdtA: WxcM-like, C-te 97.5 0.00029 6.2E-09 59.1 7.2 67 220-286 40-110 (131)
60 PF06339 Ectoine_synth: Ectoin 97.5 0.0021 4.4E-08 53.3 11.5 87 201-287 19-109 (126)
61 PF05899 Cupin_3: Protein of u 97.4 0.0003 6.6E-09 53.0 5.3 58 217-277 11-68 (74)
62 COG3435 Gentisate 1,2-dioxygen 97.4 0.00032 6.9E-09 66.0 5.7 65 216-281 95-159 (351)
63 COG4766 EutQ Ethanolamine util 97.3 0.0012 2.5E-08 56.4 7.5 71 216-290 103-174 (176)
64 PF06560 GPI: Glucose-6-phosph 97.1 0.0025 5.4E-08 56.4 8.3 66 217-282 54-139 (182)
65 PLN00212 glutelin; Provisional 97.0 0.0049 1.1E-07 62.4 10.5 64 216-279 351-419 (493)
66 COG1791 Uncharacterized conser 97.0 0.0036 7.8E-08 54.5 7.7 52 227-278 89-143 (181)
67 COG3435 Gentisate 1,2-dioxygen 96.8 0.0034 7.4E-08 59.2 6.9 64 217-282 265-329 (351)
68 COG3806 ChrR Transcriptional a 96.8 0.014 3E-07 52.1 10.1 99 189-293 100-204 (216)
69 COG3257 GlxB Uncharacterized p 96.5 0.012 2.6E-07 53.3 8.1 65 216-282 185-250 (264)
70 PF02678 Pirin: Pirin; InterP 96.3 0.02 4.4E-07 46.4 7.8 55 223-278 39-96 (107)
71 COG3822 ABC-type sugar transpo 96.3 0.011 2.5E-07 52.3 6.7 62 216-279 89-179 (225)
72 COG4297 Uncharacterized protei 96.3 0.02 4.4E-07 48.2 7.9 84 222-306 51-143 (163)
73 PRK10572 DNA-binding transcrip 96.2 0.012 2.6E-07 54.7 6.6 48 229-278 45-92 (290)
74 KOG2107 Uncharacterized conser 96.2 0.0086 1.9E-07 51.8 4.9 54 225-278 85-141 (179)
75 PF05995 CDO_I: Cysteine dioxy 96.0 0.06 1.3E-06 47.2 9.5 66 216-281 78-156 (175)
76 COG3450 Predicted enzyme of th 95.9 0.047 1E-06 44.9 8.1 58 217-278 49-107 (116)
77 PF09313 DUF1971: Domain of un 95.9 0.094 2E-06 40.5 9.0 55 229-283 19-81 (82)
78 PF05726 Pirin_C: Pirin C-term 95.8 0.069 1.5E-06 42.6 8.5 84 218-305 4-99 (104)
79 COG1741 Pirin-related protein 95.5 0.048 1E-06 51.4 7.3 69 219-288 50-125 (276)
80 PF08007 Cupin_4: Cupin superf 95.3 0.11 2.5E-06 49.6 9.6 58 220-277 120-200 (319)
81 PRK09685 DNA-binding transcrip 94.4 0.16 3.5E-06 47.4 7.7 45 234-280 72-116 (302)
82 PF12852 Cupin_6: Cupin 94.3 0.17 3.6E-06 44.1 7.2 43 234-278 36-80 (186)
83 PF14272 Gly_rich_SFCGS: Glyci 94.2 0.1 2.2E-06 41.5 5.0 77 54-136 36-113 (115)
84 COG1898 RfbC dTDP-4-dehydrorha 94.2 0.18 3.8E-06 44.4 7.1 65 222-286 54-131 (173)
85 PF13621 Cupin_8: Cupin-like d 93.9 0.43 9.4E-06 42.7 9.3 24 253-276 209-232 (251)
86 PF04209 HgmA: homogentisate 1 93.7 0.28 6E-06 48.9 8.3 53 231-285 144-196 (424)
87 PRK02261 methylaspartate mutas 93.6 1.2 2.6E-05 37.5 10.9 128 11-164 2-135 (137)
88 TIGR01221 rmlC dTDP-4-dehydror 93.4 0.46 1E-05 41.8 8.3 65 221-286 52-132 (176)
89 PF00908 dTDP_sugar_isom: dTDP 93.1 0.82 1.8E-05 40.3 9.4 67 220-287 50-133 (176)
90 PF02373 JmjC: JmjC domain, hy 93.0 0.17 3.7E-06 40.0 4.6 29 253-281 81-109 (114)
91 PF07385 DUF1498: Protein of u 92.8 0.98 2.1E-05 41.2 9.5 29 251-279 152-180 (225)
92 PF04962 KduI: KduI/IolB famil 92.6 0.81 1.7E-05 42.8 9.1 68 217-286 31-107 (261)
93 PHA00672 hypothetical protein 92.6 0.6 1.3E-05 38.9 7.2 82 216-307 50-133 (152)
94 TIGR03577 EF_0830 conserved hy 91.9 0.39 8.4E-06 38.2 5.2 77 54-136 36-113 (115)
95 TIGR00218 manA mannose-6-phosp 91.9 1.4 3.1E-05 41.7 10.1 49 231-282 251-299 (302)
96 PF14525 AraC_binding_2: AraC- 91.8 0.79 1.7E-05 38.3 7.5 46 235-282 57-102 (172)
97 PF05118 Asp_Arg_Hydrox: Aspar 91.8 0.53 1.2E-05 40.7 6.5 63 216-280 83-151 (163)
98 KOG3995 3-hydroxyanthranilate 91.2 0.52 1.1E-05 42.6 5.8 62 219-280 39-102 (279)
99 TIGR01015 hmgA homogentisate 1 91.0 0.81 1.8E-05 45.5 7.6 53 230-284 145-197 (429)
100 COG2850 Uncharacterized conser 89.8 0.4 8.7E-06 46.7 4.2 59 219-279 125-205 (383)
101 TIGR01501 MthylAspMutase methy 89.6 5.6 0.00012 33.5 10.5 113 27-163 18-132 (134)
102 KOG2757 Mannose-6-phosphate is 89.3 0.99 2.2E-05 44.0 6.4 61 217-279 337-398 (411)
103 PRK05341 homogentisate 1,2-dio 88.7 1.5 3.3E-05 43.8 7.4 53 230-284 151-204 (438)
104 PF11142 DUF2917: Protein of u 88.6 0.97 2.1E-05 33.0 4.6 55 218-273 2-56 (63)
105 PRK12335 tellurite resistance 88.4 1.2 2.6E-05 41.8 6.3 62 222-283 20-89 (287)
106 PF07847 DUF1637: Protein of u 88.4 1.1 2.5E-05 40.2 5.9 67 216-282 47-138 (200)
107 COG1482 ManA Phosphomannose is 88.2 5.5 0.00012 38.2 10.6 38 231-270 258-295 (312)
108 PRK15131 mannose-6-phosphate i 87.9 2 4.3E-05 42.5 7.7 47 233-282 339-385 (389)
109 PLN02658 homogentisate 1,2-dio 87.3 2.1 4.5E-05 42.8 7.4 53 230-284 144-197 (435)
110 PLN02288 mannose-6-phosphate i 86.9 1.6 3.4E-05 43.3 6.4 52 217-270 338-391 (394)
111 PF02302 PTS_IIB: PTS system, 86.9 0.31 6.7E-06 37.2 1.1 20 71-90 1-21 (90)
112 cd05564 PTS_IIB_chitobiose_lic 85.2 0.29 6.3E-06 38.6 0.2 19 72-90 2-20 (96)
113 TIGR00853 pts-lac PTS system, 83.4 0.47 1E-05 37.5 0.7 22 70-91 4-25 (95)
114 PF06865 DUF1255: Protein of u 83.3 6.7 0.00014 31.1 7.1 61 219-282 29-90 (94)
115 PF03698 UPF0180: Uncharacteri 83.1 1 2.2E-05 34.7 2.4 21 28-48 11-31 (80)
116 PRK10579 hypothetical protein; 83.0 7.8 0.00017 30.7 7.4 49 234-282 42-90 (94)
117 PRK09590 celB cellobiose phosp 82.2 0.64 1.4E-05 37.4 1.1 20 71-90 3-22 (104)
118 PRK00924 5-keto-4-deoxyuronate 82.1 6.9 0.00015 37.0 8.0 53 233-287 73-130 (276)
119 cd05568 PTS_IIB_bgl_like PTS_I 81.7 0.6 1.3E-05 35.0 0.7 20 71-90 2-22 (85)
120 COG3508 HmgA Homogentisate 1,2 81.6 6.4 0.00014 38.4 7.7 46 232-279 145-190 (427)
121 PF02878 PGM_PMM_I: Phosphoglu 81.6 4.5 9.7E-05 33.5 6.0 96 11-139 39-136 (137)
122 PRK10310 PTS system galactitol 81.5 0.91 2E-05 35.7 1.7 48 71-120 4-59 (94)
123 TIGR00640 acid_CoA_mut_C methy 81.5 15 0.00032 30.7 9.1 60 12-79 2-63 (132)
124 cd05566 PTS_IIB_galactitol PTS 81.2 0.59 1.3E-05 35.7 0.5 20 71-90 2-22 (89)
125 TIGR00218 manA mannose-6-phosp 80.7 0.88 1.9E-05 43.2 1.6 21 253-273 151-171 (302)
126 PF06719 AraC_N: AraC-type tra 80.7 17 0.00037 30.9 9.4 42 232-275 22-63 (155)
127 PRK03094 hypothetical protein; 80.6 1.2 2.7E-05 34.2 2.1 19 28-46 11-29 (80)
128 PRK10499 PTS system N,N'-diace 79.6 0.94 2E-05 36.5 1.2 20 71-90 5-24 (106)
129 cd02071 MM_CoA_mut_B12_BD meth 79.2 4.3 9.4E-05 33.0 5.1 103 28-160 17-121 (122)
130 COG3718 IolB Uncharacterized e 79.1 15 0.00032 34.0 8.8 70 216-287 32-111 (270)
131 COG0127 Xanthosine triphosphat 79.0 2.5 5.4E-05 37.9 3.8 81 12-100 1-92 (194)
132 cd05567 PTS_IIB_mannitol PTS_I 78.9 0.79 1.7E-05 35.2 0.5 19 71-89 2-21 (87)
133 PRK09375 quinolinate synthetas 78.8 15 0.00033 35.4 9.3 114 1-134 79-205 (319)
134 TIGR02667 moaB_proteo molybden 78.6 3.1 6.8E-05 35.9 4.3 107 29-139 26-153 (163)
135 COG1482 ManA Phosphomannose is 77.8 2.4 5.1E-05 40.7 3.5 21 253-273 158-178 (312)
136 PF10941 DUF2620: Protein of u 77.7 24 0.00052 29.0 8.8 92 13-132 1-92 (117)
137 COG3615 TehB Uncharacterized p 77.4 5.7 0.00012 31.6 4.9 53 229-282 30-91 (99)
138 PRK14324 glmM phosphoglucosami 77.4 6.5 0.00014 39.3 6.7 43 14-56 41-85 (446)
139 cd00886 MogA_MoaB MogA_MoaB fa 77.0 3.4 7.5E-05 35.0 4.0 50 29-82 24-75 (152)
140 PRK14314 glmM phosphoglucosami 76.8 7.7 0.00017 38.8 7.1 42 14-55 44-87 (450)
141 PRK14316 glmM phosphoglucosami 76.5 7.7 0.00017 38.7 7.0 45 13-57 41-87 (448)
142 COG1109 {ManB} Phosphomannomut 76.1 8.3 0.00018 38.8 7.1 58 13-78 45-104 (464)
143 cd02072 Glm_B12_BD B12 binding 75.8 4.1 8.9E-05 34.1 4.0 109 27-159 16-126 (128)
144 PRK14315 glmM phosphoglucosami 75.8 8.5 0.00018 38.5 7.0 43 14-56 44-88 (448)
145 COG3414 SgaB Phosphotransferas 74.7 1.5 3.3E-05 34.6 1.1 17 71-87 3-19 (93)
146 cd02067 B12-binding B12 bindin 74.4 9.7 0.00021 30.4 5.9 28 19-47 9-36 (119)
147 PRK15414 phosphomannomutase Cp 73.9 10 0.00022 38.1 7.0 43 14-56 40-84 (456)
148 COG5553 Predicted metal-depend 73.2 4.7 0.0001 35.1 3.8 61 216-277 76-145 (191)
149 PRK14320 glmM phosphoglucosami 73.2 11 0.00024 37.6 7.1 44 14-57 43-88 (443)
150 cd02070 corrinoid_protein_B12- 73.1 8.1 0.00018 34.3 5.6 67 12-82 82-177 (201)
151 cd05799 PGM2 This CD includes 72.6 12 0.00026 37.7 7.3 43 14-56 47-92 (487)
152 PRK15131 mannose-6-phosphate i 72.5 3.4 7.4E-05 40.8 3.2 21 253-273 237-257 (389)
153 cd00758 MoCF_BD MoCF_BD: molyb 72.2 6 0.00013 32.7 4.2 47 29-81 23-71 (133)
154 PF10137 TIR-like: Predicted n 72.2 19 0.00041 29.9 7.1 57 14-77 1-59 (125)
155 PRK15186 AraC family transcrip 71.8 9.8 0.00021 36.1 6.0 43 235-278 40-82 (291)
156 PF00994 MoCF_biosynth: Probab 71.2 6 0.00013 33.0 4.0 49 28-82 20-70 (144)
157 KOG3706 Uncharacterized conser 70.9 3 6.6E-05 42.1 2.4 60 218-277 322-405 (629)
158 cd02069 methionine_synthase_B1 70.6 15 0.00032 33.2 6.6 71 12-87 88-186 (213)
159 PF13759 2OG-FeII_Oxy_5: Putat 70.0 9.1 0.0002 29.9 4.6 57 218-276 5-89 (101)
160 TIGR02990 ectoine_eutA ectoine 70.0 17 0.00038 33.4 7.1 69 13-87 121-199 (239)
161 cd03089 PMM_PGM The phosphoman 68.9 14 0.00031 36.8 6.8 43 14-56 38-82 (443)
162 cd05802 GlmM GlmM is a bacteri 67.8 18 0.00039 35.9 7.3 45 14-58 39-85 (434)
163 PRK14318 glmM phosphoglucosami 67.7 18 0.00038 36.2 7.2 44 14-57 46-91 (448)
164 PRK14323 glmM phosphoglucosami 67.6 18 0.00038 36.1 7.2 44 14-57 44-89 (440)
165 cd05803 PGM_like4 This PGM-lik 67.5 18 0.00039 36.0 7.2 44 14-57 39-84 (445)
166 PF00455 DeoRC: DeoR C termina 66.6 12 0.00026 32.0 5.1 82 52-141 9-99 (161)
167 PRK10887 glmM phosphoglucosami 66.6 18 0.00039 36.1 7.0 44 14-57 41-86 (443)
168 cd03087 PGM_like1 This archaea 66.6 15 0.00033 36.4 6.5 44 14-57 35-80 (439)
169 PRK14317 glmM phosphoglucosami 65.6 18 0.0004 36.3 6.9 43 14-56 57-101 (465)
170 COG1741 Pirin-related protein 65.6 60 0.0013 30.7 9.8 85 216-306 176-272 (276)
171 PF07385 DUF1498: Protein of u 65.5 19 0.00042 32.9 6.3 30 217-246 91-122 (225)
172 cd05800 PGM_like2 This PGM-lik 65.2 23 0.00049 35.4 7.5 67 13-79 40-115 (461)
173 PF04263 TPK_catalytic: Thiami 65.1 30 0.00066 28.5 6.9 61 14-79 17-95 (123)
174 cd05563 PTS_IIB_ascorbate PTS_ 64.7 3.9 8.4E-05 30.9 1.5 15 72-86 2-16 (86)
175 TIGR02466 conserved hypothetic 64.4 17 0.00037 32.6 5.8 58 217-276 100-185 (201)
176 PF00027 cNMP_binding: Cyclic 64.0 20 0.00043 26.0 5.2 66 219-284 3-77 (91)
177 PRK14321 glmM phosphoglucosami 63.7 23 0.00049 35.5 7.1 44 14-57 38-83 (449)
178 COG3123 Uncharacterized protei 63.6 24 0.00051 27.5 5.5 48 233-280 41-88 (94)
179 COG0521 MoaB Molybdopterin bio 63.5 14 0.0003 32.5 4.8 119 13-136 10-154 (169)
180 PF04962 KduI: KduI/IolB famil 63.4 22 0.00048 33.2 6.5 61 225-286 165-242 (261)
181 PF05962 HutD: HutD; InterPro 63.1 10 0.00022 33.5 4.0 34 232-267 134-167 (184)
182 cd05805 MPG1_transferase GTP-m 61.2 23 0.0005 35.2 6.6 44 14-57 36-81 (441)
183 PRK14319 glmM phosphoglucosami 61.1 25 0.00054 34.9 6.8 41 14-54 36-78 (430)
184 PLN02288 mannose-6-phosphate i 60.4 8.8 0.00019 38.1 3.4 23 253-275 251-273 (394)
185 TIGR00177 molyb_syn molybdenum 60.4 14 0.0003 31.0 4.2 52 20-81 26-79 (144)
186 TIGR01455 glmM phosphoglucosam 60.2 30 0.00064 34.5 7.2 44 14-57 40-85 (443)
187 PRK14322 glmM phosphoglucosami 59.9 24 0.00053 35.0 6.5 43 14-56 39-83 (429)
188 smart00852 MoCF_biosynth Proba 59.8 15 0.00033 30.2 4.3 48 29-82 22-71 (135)
189 TIGR02370 pyl_corrinoid methyl 59.3 72 0.0016 28.2 8.8 37 13-50 85-124 (197)
190 cd00578 L-fuc_L-ara-isomerases 59.3 25 0.00055 35.1 6.5 67 15-85 5-80 (452)
191 cd03088 ManB ManB is a bacteri 59.2 30 0.00065 34.7 7.1 64 14-77 38-108 (459)
192 PF09391 DUF2000: Protein of u 56.8 18 0.00038 30.4 4.2 57 15-78 57-118 (133)
193 PRK09542 manB phosphomannomuta 56.6 17 0.00037 36.3 4.8 67 14-80 37-110 (445)
194 COG5012 Predicted cobalamin bi 55.6 23 0.00051 32.4 5.0 39 11-49 103-143 (227)
195 COG1252 Ndh NADH dehydrogenase 55.3 42 0.00091 33.5 7.2 120 11-132 3-176 (405)
196 PF13399 LytR_C: LytR cell env 54.0 36 0.00077 25.8 5.2 50 13-62 4-62 (90)
197 PTZ00150 phosphoglucomutase-2- 53.3 43 0.00094 34.8 7.3 44 14-57 91-137 (584)
198 cd03086 PGM3 PGM3 (phosphogluc 52.7 31 0.00066 35.4 6.0 38 11-48 101-140 (513)
199 TIGR01132 pgm phosphoglucomuta 52.6 49 0.0011 34.0 7.5 43 14-56 79-126 (543)
200 cd00133 PTS_IIB PTS_IIB: subun 51.7 9.4 0.0002 27.6 1.6 15 71-85 1-15 (84)
201 cd00038 CAP_ED effector domain 51.1 66 0.0014 23.7 6.4 66 217-282 19-93 (115)
202 PRK11753 DNA-binding transcrip 50.7 1.4E+02 0.003 25.7 9.2 70 217-286 22-101 (211)
203 PRK14821 putative deoxyribonuc 49.8 23 0.00049 31.3 3.9 74 13-94 1-81 (184)
204 PLN02371 phosphoglucosamine mu 49.5 53 0.0011 34.2 7.2 44 14-57 117-162 (583)
205 COG0041 PurE Phosphoribosylcar 49.1 48 0.001 28.7 5.6 73 13-97 5-79 (162)
206 PRK10402 DNA-binding transcrip 48.5 1E+02 0.0023 27.2 8.2 73 218-290 34-115 (226)
207 PRK09391 fixK transcriptional 48.2 89 0.0019 27.9 7.7 70 217-286 40-115 (230)
208 cd04885 ACT_ThrD-I Tandem C-te 48.0 25 0.00054 25.3 3.3 31 13-43 38-68 (68)
209 PF04622 ERG2_Sigma1R: ERG2 an 47.6 91 0.002 28.4 7.6 64 222-287 108-173 (216)
210 TIGR02082 metH 5-methyltetrahy 47.2 50 0.0011 37.4 7.0 74 12-89 732-832 (1178)
211 PRK14824 putative deoxyribonuc 46.8 41 0.00089 30.2 5.2 76 13-96 1-84 (201)
212 PRK09548 PTS system ascorbate- 46.5 27 0.00059 36.5 4.5 33 10-42 504-539 (602)
213 COG3473 Maleate cis-trans isom 46.0 52 0.0011 30.1 5.6 57 14-76 120-186 (238)
214 TIGR01162 purE phosphoribosyla 45.8 34 0.00073 29.6 4.3 72 15-98 3-76 (156)
215 PF01975 SurE: Survival protei 45.7 26 0.00057 31.2 3.8 33 13-46 1-35 (196)
216 PRK13918 CRP/FNR family transc 45.4 1.2E+02 0.0027 25.9 8.0 67 218-284 9-85 (202)
217 PF13640 2OG-FeII_Oxy_3: 2OG-F 44.5 74 0.0016 24.1 5.8 58 217-276 3-86 (100)
218 PRK00120 dITP/XTP pyrophosphat 44.2 30 0.00066 30.9 3.9 74 13-94 1-84 (196)
219 COG2731 EbgC Beta-galactosidas 44.2 79 0.0017 27.3 6.3 28 251-278 110-137 (154)
220 cd03087 PGM_like1 This archaea 43.9 97 0.0021 30.7 7.9 35 10-46 162-196 (439)
221 PRK13509 transcriptional repre 43.8 76 0.0017 29.1 6.7 80 52-141 83-171 (251)
222 cd05565 PTS_IIB_lactose PTS_II 43.5 8.1 0.00018 30.8 0.1 49 72-121 3-57 (99)
223 PTZ00318 NADH dehydrogenase-li 43.4 1E+02 0.0022 30.3 7.9 44 1-49 1-44 (424)
224 COG3150 Predicted esterase [Ge 42.9 33 0.00072 30.4 3.8 68 25-97 15-87 (191)
225 PF02879 PGM_PMM_II: Phosphogl 42.3 1.6E+02 0.0034 22.7 7.7 63 11-79 20-94 (104)
226 PRK03604 moaC bifunctional mol 41.8 36 0.00078 32.7 4.2 63 15-82 160-229 (312)
227 cd00885 cinA Competence-damage 41.8 36 0.00079 29.5 3.9 80 29-137 23-104 (170)
228 cd00887 MoeA MoeA family. Memb 41.7 40 0.00087 33.2 4.7 47 29-81 199-247 (394)
229 PRK01372 ddl D-alanine--D-alan 41.6 1.1E+02 0.0024 28.3 7.4 61 11-81 3-69 (304)
230 PRK00924 5-keto-4-deoxyuronate 41.4 70 0.0015 30.3 6.0 64 218-282 180-254 (276)
231 cd05800 PGM_like2 This PGM-lik 40.0 1.1E+02 0.0024 30.5 7.7 72 11-88 172-254 (461)
232 PRK05928 hemD uroporphyrinogen 39.2 1.5E+02 0.0033 26.1 7.7 110 13-132 2-120 (249)
233 KOG2130 Phosphatidylserine-spe 39.1 37 0.0008 32.9 3.7 28 255-282 265-292 (407)
234 COG0303 MoeA Molybdopterin bio 39.1 44 0.00096 33.3 4.5 48 29-82 207-256 (404)
235 PRK05467 Fe(II)-dependent oxyg 38.7 74 0.0016 29.1 5.6 36 252-287 140-177 (226)
236 COG3414 SgaB Phosphotransferas 38.1 57 0.0012 25.7 4.2 30 12-41 1-33 (93)
237 PRK07564 phosphoglucomutase; V 37.4 99 0.0022 31.8 6.9 43 14-56 78-125 (543)
238 KOG1356 Putative transcription 36.3 12 0.00026 40.3 0.0 29 251-279 797-825 (889)
239 cd07995 TPK Thiamine pyrophosp 36.2 1.4E+02 0.003 26.5 6.9 61 14-79 23-101 (208)
240 PRK14498 putative molybdopteri 35.7 43 0.00093 35.0 4.0 99 29-137 217-327 (633)
241 PF01238 PMI_typeI: Phosphoman 35.3 25 0.00054 34.5 2.1 23 253-275 250-272 (373)
242 COG0062 Uncharacterized conser 34.8 39 0.00085 30.5 3.1 30 51-80 31-60 (203)
243 PRK05627 bifunctional riboflav 34.7 1.1E+02 0.0024 29.1 6.4 84 11-98 114-227 (305)
244 PRK14822 nucleoside-triphospha 34.6 72 0.0016 28.6 4.8 76 13-96 2-88 (200)
245 cd06338 PBP1_ABC_ligand_bindin 34.6 1.4E+02 0.003 27.7 7.0 61 15-81 146-208 (345)
246 cd06341 PBP1_ABC_ligand_bindin 34.4 3.8E+02 0.0081 24.8 10.5 65 14-84 134-204 (341)
247 PRK08058 DNA polymerase III su 34.4 62 0.0014 30.9 4.6 92 26-141 14-109 (329)
248 COG2185 Sbm Methylmalonyl-CoA 34.1 92 0.002 26.6 5.1 108 12-140 12-121 (143)
249 PRK14823 putative deoxyribonuc 34.1 35 0.00076 30.3 2.7 73 13-94 1-84 (191)
250 COG1751 Uncharacterized conser 34.1 38 0.00082 29.5 2.7 32 12-43 51-88 (186)
251 PF10100 DUF2338: Uncharacteri 34.0 61 0.0013 32.5 4.5 34 13-46 168-201 (429)
252 PRK09802 DNA-binding transcrip 33.9 96 0.0021 28.9 5.7 81 52-141 96-186 (269)
253 PRK09392 ftrB transcriptional 33.7 1.9E+02 0.004 25.6 7.4 77 217-293 32-116 (236)
254 PLN02714 thiamin pyrophosphoki 33.7 1.8E+02 0.004 26.4 7.4 33 28-60 67-100 (229)
255 cd06348 PBP1_ABC_ligand_bindin 33.7 1.5E+02 0.0033 27.6 7.1 65 13-83 137-206 (344)
256 PRK08105 flavodoxin; Provision 33.6 1.4E+02 0.003 25.1 6.2 58 12-81 3-62 (149)
257 cd04907 ACT_ThrD-I_2 Second of 33.5 85 0.0018 23.8 4.4 33 14-47 42-74 (81)
258 COG2984 ABC-type uncharacteriz 33.2 1.7E+02 0.0036 28.4 7.2 115 14-135 32-156 (322)
259 cd03085 PGM1 Phosphoglucomutas 32.8 1.4E+02 0.003 30.9 7.1 44 14-57 51-99 (548)
260 PRK11161 fumarate/nitrate redu 32.5 2.2E+02 0.0047 25.1 7.6 66 219-284 41-114 (235)
261 COG3128 PiuC Uncharacterized i 32.5 90 0.0019 28.1 4.9 27 251-277 142-168 (229)
262 PRK14314 glmM phosphoglucosami 32.5 1.9E+02 0.0041 28.9 7.9 67 11-79 176-257 (450)
263 cd06366 PBP1_GABAb_receptor Li 32.1 1.5E+02 0.0034 27.6 6.9 63 14-82 137-205 (350)
264 PHA02890 hypothetical protein; 31.6 1.9E+02 0.0041 27.2 7.0 39 237-275 96-136 (278)
265 PRK09453 phosphodiesterase; Pr 31.5 77 0.0017 27.2 4.4 30 13-42 1-31 (182)
266 PLN02699 Bifunctional molybdop 31.4 57 0.0012 34.6 4.1 48 29-81 213-262 (659)
267 cd04906 ACT_ThrD-I_1 First of 31.3 1E+02 0.0022 23.2 4.5 34 14-47 41-75 (85)
268 PF04914 DltD_C: DltD C-termin 30.6 46 0.001 27.8 2.7 33 19-51 64-102 (130)
269 COG0163 UbiX 3-polyprenyl-4-hy 30.6 81 0.0018 28.2 4.3 33 12-44 2-35 (191)
270 PRK10680 molybdopterin biosynt 30.3 62 0.0014 32.2 4.0 97 29-135 208-316 (411)
271 PRK01018 50S ribosomal protein 30.0 1E+02 0.0023 24.2 4.5 40 14-60 35-75 (99)
272 PLN02868 acyl-CoA thioesterase 29.7 1.8E+02 0.0039 28.6 7.1 70 218-287 34-109 (413)
273 PF06999 Suc_Fer-like: Sucrase 29.6 1E+02 0.0022 27.7 4.9 59 70-137 132-219 (230)
274 PRK14690 molybdopterin biosynt 29.3 66 0.0014 32.1 4.0 47 29-81 224-272 (419)
275 PRK09490 metH B12-dependent me 29.2 1.3E+02 0.0028 34.4 6.5 35 13-47 752-788 (1229)
276 PRK14491 putative bifunctional 28.5 67 0.0015 33.6 4.0 101 29-135 398-506 (597)
277 PF13271 DUF4062: Domain of un 28.4 2.5E+02 0.0054 21.0 6.3 65 14-83 1-67 (83)
278 PLN02307 phosphoglucomutase 28.3 2.2E+02 0.0047 29.8 7.7 64 14-77 63-143 (579)
279 PF13443 HTH_26: Cro/C1-type H 28.2 56 0.0012 22.7 2.5 40 126-170 22-61 (63)
280 cd05805 MPG1_transferase GTP-m 28.1 2.3E+02 0.0049 28.1 7.6 67 11-79 167-249 (441)
281 PRK12483 threonine dehydratase 28.0 1.1E+02 0.0024 31.5 5.4 73 68-141 83-165 (521)
282 smart00100 cNMP Cyclic nucleot 27.9 1.8E+02 0.004 21.3 5.5 50 217-266 19-72 (120)
283 KOG2131 Uncharacterized conser 27.8 37 0.00079 33.5 1.8 49 257-305 272-326 (427)
284 PRK14497 putative molybdopteri 27.7 72 0.0016 33.1 4.0 48 29-82 210-259 (546)
285 cd06352 PBP1_NPR_GC_like Ligan 27.4 1.9E+02 0.0041 27.4 6.7 61 13-80 138-205 (389)
286 PRK14323 glmM phosphoglucosami 27.2 2.6E+02 0.0057 27.7 7.9 67 11-79 172-253 (440)
287 PF05818 TraT: Enterobacterial 27.2 50 0.0011 30.1 2.4 27 18-45 31-57 (215)
288 cd03084 phosphohexomutase The 26.8 2.9E+02 0.0064 26.4 7.9 71 11-87 111-193 (355)
289 cd05803 PGM_like4 This PGM-lik 26.6 2.6E+02 0.0057 27.7 7.7 71 11-87 172-252 (445)
290 PRK01424 S-adenosylmethionine: 26.4 59 0.0013 31.9 2.9 62 15-79 196-278 (366)
291 cd06336 PBP1_ABC_ligand_bindin 26.1 2E+02 0.0043 27.0 6.5 61 14-80 140-204 (347)
292 TIGR02706 P_butyryltrans phosp 26.1 1.4E+02 0.0031 28.1 5.5 39 49-93 72-113 (294)
293 TIGR00678 holB DNA polymerase 25.9 1.2E+02 0.0026 26.0 4.6 35 107-141 61-95 (188)
294 COG1109 {ManB} Phosphomannomut 25.6 2.9E+02 0.0063 27.7 7.9 98 10-109 176-302 (464)
295 PRK14324 glmM phosphoglucosami 25.5 2.9E+02 0.0062 27.6 7.8 67 11-79 174-255 (446)
296 PLN02895 phosphoacetylglucosam 25.5 1.6E+02 0.0036 30.6 6.1 37 11-47 126-164 (562)
297 TIGR00768 rimK_fam alpha-L-glu 25.0 89 0.0019 28.1 3.8 32 14-46 1-32 (277)
298 PF02310 B12-binding: B12 bind 24.9 3.3E+02 0.0072 21.1 7.5 32 28-62 18-49 (121)
299 PRK01215 competence damage-ind 24.6 1.2E+02 0.0026 28.3 4.6 80 28-136 26-107 (264)
300 PRK03670 competence damage-ind 24.5 1.1E+02 0.0023 28.5 4.2 81 29-137 24-106 (252)
301 PRK10681 DNA-binding transcrip 24.5 1.7E+02 0.0036 26.9 5.5 62 52-121 82-145 (252)
302 PRK15414 phosphomannomutase Cp 23.9 3.2E+02 0.0069 27.3 7.8 35 11-45 169-206 (456)
303 cd06358 PBP1_NHase Type I peri 23.9 3E+02 0.0065 25.5 7.2 65 13-83 133-201 (333)
304 PRK10202 ebgC cryptic beta-D-g 23.8 1E+02 0.0022 26.2 3.6 22 253-274 106-127 (149)
305 PRK10434 srlR DNA-bindng trans 23.7 1.7E+02 0.0038 26.8 5.5 80 52-140 81-171 (256)
306 cd05126 Mth938 Mth938 domain. 23.4 62 0.0013 26.4 2.1 33 14-46 61-94 (117)
307 PF00585 Thr_dehydrat_C: C-ter 23.3 93 0.002 24.1 3.0 34 14-47 51-84 (91)
308 cd01829 SGNH_hydrolase_peri2 S 23.2 3.1E+02 0.0067 23.2 6.7 61 15-79 2-70 (200)
309 PF04430 DUF498: Protein of un 23.2 48 0.001 26.4 1.5 36 11-46 53-88 (110)
310 PF02401 LYTB: LytB protein; 23.1 5.1E+02 0.011 24.5 8.5 113 15-136 66-179 (281)
311 TIGR01378 thi_PPkinase thiamin 22.9 3.2E+02 0.0069 24.2 6.8 60 15-79 20-97 (203)
312 cd06284 PBP1_LacI_like_6 Ligan 22.5 5.1E+02 0.011 22.4 8.2 55 21-81 12-67 (267)
313 PRK07742 phosphate butyryltran 22.5 1.7E+02 0.0038 27.7 5.3 35 53-93 79-116 (299)
314 cd05802 GlmM GlmM is a bacteri 22.5 3.9E+02 0.0084 26.4 8.1 67 11-79 168-249 (434)
315 COG1611 Predicted Rossmann fol 22.4 57 0.0012 29.4 1.9 43 49-98 32-78 (205)
316 PF13407 Peripla_BP_4: Peripla 22.4 60 0.0013 28.7 2.1 96 29-137 71-180 (257)
317 PF13528 Glyco_trans_1_3: Glyc 22.4 1.1E+02 0.0025 28.0 4.0 30 13-44 1-33 (318)
318 KOG0498 K+-channel ERG and rel 22.3 1.1E+02 0.0024 32.9 4.3 61 219-282 446-519 (727)
319 PRK14321 glmM phosphoglucosami 22.2 3.7E+02 0.0079 26.8 7.8 67 11-79 164-246 (449)
320 PF04027 DUF371: Domain of unk 22.2 57 0.0012 27.5 1.7 27 14-41 100-126 (132)
321 COG4408 Uncharacterized protei 22.1 78 0.0017 31.0 2.8 34 13-46 170-203 (431)
322 COG0664 Crp cAMP-binding prote 22.1 3.2E+02 0.007 22.8 6.6 74 217-290 25-107 (214)
323 cd01536 PBP1_ABC_sugar_binding 22.1 3.4E+02 0.0073 23.5 6.9 55 20-79 11-65 (267)
324 PTZ00302 N-acetylglucosamine-p 22.0 2.1E+02 0.0045 30.0 6.1 36 12-47 152-190 (585)
325 PHA02984 hypothetical protein; 21.9 3.8E+02 0.0081 25.4 7.1 40 237-276 97-138 (286)
326 PRK14316 glmM phosphoglucosami 21.9 3.9E+02 0.0084 26.5 7.9 67 11-79 172-253 (448)
327 cd00515 HAM1 NTPase/HAM1. Thi 21.9 80 0.0017 27.7 2.7 64 28-97 12-83 (183)
328 cd03522 MoeA_like MoeA_like. T 21.8 1.3E+02 0.0029 28.8 4.4 105 28-137 182-295 (312)
329 cd06350 PBP1_GPCR_family_C_lik 21.8 3E+02 0.0065 25.4 6.8 61 14-80 162-228 (348)
330 PRK10906 DNA-binding transcrip 21.7 1.8E+02 0.0039 26.7 5.1 62 52-121 81-144 (252)
331 PF05728 UPF0227: Uncharacteri 21.6 1.5E+02 0.0033 26.0 4.5 54 27-84 17-72 (187)
332 PRK14317 glmM phosphoglucosami 21.6 3.7E+02 0.008 26.9 7.7 67 11-79 187-268 (465)
333 TIGR01455 glmM phosphoglucosam 21.5 4.1E+02 0.0089 26.3 8.0 67 11-79 171-252 (443)
334 PRK03606 ureidoglycolate hydro 21.4 4.4E+02 0.0096 22.8 7.2 60 228-287 73-143 (162)
335 cd06327 PBP1_SBP_like_1 Peripl 21.4 2.7E+02 0.0058 25.8 6.3 65 13-83 136-204 (334)
336 cd08179 NADPH_BDH NADPH-depend 21.4 3.5E+02 0.0077 26.2 7.4 61 14-79 25-91 (375)
337 PF12850 Metallophos_2: Calcin 21.3 1.4E+02 0.0031 24.0 4.0 22 13-34 1-23 (156)
338 PRK00147 queA S-adenosylmethio 21.1 90 0.0019 30.5 3.1 62 15-79 174-256 (342)
339 PLN02948 phosphoribosylaminoim 21.0 2E+02 0.0043 30.0 5.8 72 14-97 414-487 (577)
340 cd02106 Band_7 The band 7 doma 21.0 1.4E+02 0.0031 22.6 3.8 27 25-51 83-111 (121)
341 PRK09004 FMN-binding protein M 20.9 3.1E+02 0.0067 22.9 6.0 56 12-81 3-60 (146)
342 PF00054 Laminin_G_1: Laminin 20.9 3.2E+02 0.0069 22.0 6.0 49 237-287 24-73 (131)
343 PF13458 Peripla_BP_6: Peripla 20.9 3.9E+02 0.0085 24.4 7.3 59 18-83 143-204 (343)
344 PRK07239 bifunctional uroporph 20.8 7.6E+02 0.016 23.8 11.0 118 1-132 1-137 (381)
345 PHA02119 hypothetical protein 20.7 74 0.0016 23.9 1.8 30 13-42 42-71 (87)
346 PRK13609 diacylglycerol glucos 20.6 1.5E+02 0.0031 28.3 4.4 32 11-42 3-37 (380)
347 PRK14315 glmM phosphoglucosami 20.5 4.4E+02 0.0095 26.2 8.0 67 11-79 175-256 (448)
348 PRK02491 putative deoxyribonuc 20.4 1.7E+02 0.0037 28.4 4.8 78 11-96 126-214 (328)
349 PRK10411 DNA-binding transcrip 20.4 2.3E+02 0.0049 25.9 5.5 80 52-140 83-171 (240)
350 COG1349 GlpR Transcriptional r 20.3 2.1E+02 0.0046 26.3 5.3 62 52-121 81-144 (253)
351 cd06335 PBP1_ABC_ligand_bindin 20.1 4.5E+02 0.0098 24.5 7.7 64 14-83 140-207 (347)
No 1
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=100.00 E-value=9.6e-57 Score=377.77 Aligned_cols=137 Identities=23% Similarity=0.319 Sum_probs=132.8
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC--CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCC
Q 021698 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS--DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNP 90 (309)
Q Consensus 13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~--~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~ 90 (309)
|||+|||||+||+||+.|++||+++||||+|+|++ |||++|.+||++|.+ ++++|||+|||||+||||+|||+|
T Consensus 1 MkI~igsDhaG~~lK~~l~~~L~~~g~eV~D~G~~~~dypd~a~~va~~V~~----~e~~~GIliCGtGiG~siaANKv~ 76 (141)
T PRK12613 1 MAIILGADAHGNALKELIKSFLQEEGYDIIDVTDINSDFIDNTLAVAKAVNE----AEGRLGIMVDAYGAGPFMVATKLK 76 (141)
T ss_pred CEEEEEeCcchHHHHHHHHHHHHHCCCEEEEcCCCCCChHHHHHHHHHHHHc----CCCceEEEEcCCCHhHhhhhhcCC
Confidence 89999999999999999999999999999999984 799999999999998 999999999999999999999999
Q ss_pred ceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHh
Q 021698 91 GVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSC 157 (309)
Q Consensus 91 giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~ 157 (309)
|||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++ ++++++++.|.+
T Consensus 77 GIRaA~~~d~~~A~~ar~hNnaNVl~lG~r~ig~~~a~~iv~~fL~t~f~g----grh~~Rv~~i~~ 139 (141)
T PRK12613 77 GMVAAEVSDERSAYMTRGHNNARMITMGAEIVGPELAKNIAKGFVTGPYDG----GRHQIRVDMLNK 139 (141)
T ss_pred CeEEEEECCHHHHHHHHHHcCCcEEEECccccCHHHHHHHHHHHHcCCCCC----ccHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999997 799988888765
No 2
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=100.00 E-value=9.4e-57 Score=377.84 Aligned_cols=137 Identities=23% Similarity=0.331 Sum_probs=132.4
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC---CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCC
Q 021698 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT---SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKN 89 (309)
Q Consensus 13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~---~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~ 89 (309)
|||+|||||+||+||++|++||+++||||+|+|+ .|||++|.+||+.|++ ++++|||||||||+||||+|||+
T Consensus 1 MkI~IgsDh~G~~lK~~i~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~----~e~~~GIliCGtGiG~siaANK~ 76 (141)
T TIGR01118 1 MAIIIGSDLAGKRLKDVIKNFLVDNGFEVIDVTEGDGQDFVDVTLAVASEVQK----DEQNLGIVIDAYGAGSFMVATKI 76 (141)
T ss_pred CEEEEEeCcchHHHHHHHHHHHHHCCCEEEEcCCCCCCCcHHHHHHHHHHHHc----CCCceEEEEcCCCHhHhhhhhcC
Confidence 8999999999999999999999999999999998 3799999999999998 99999999999999999999999
Q ss_pred CceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHh
Q 021698 90 PGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSC 157 (309)
Q Consensus 90 ~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~ 157 (309)
||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++ ++++++++.|.+
T Consensus 77 ~GIRAA~~~d~~~A~~ar~hNnaNVL~lG~r~~g~~~a~~iv~~fL~t~f~g----grh~~Rv~~i~~ 140 (141)
T TIGR01118 77 KGMIAAEVSDERSAYMTRGHNNARMITVGAEIVGDELAKNIVKAFVEGKYDG----GRHQIRVDMLNK 140 (141)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCcEEEECccccCHHHHHHHHHHHHcCCCCC----ccHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999997 799988887764
No 3
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=100.00 E-value=1.5e-56 Score=377.08 Aligned_cols=137 Identities=23% Similarity=0.305 Sum_probs=132.8
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC---CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCC
Q 021698 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS---DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKN 89 (309)
Q Consensus 13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~---~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~ 89 (309)
|||+|||||+||+||+.|++||+++||||+|+|++ |||++|.+||++|.+ +++++||||||||+||||+||||
T Consensus 1 mkI~igsDhaG~~lK~~l~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~----~~~~~GIliCGTGiG~siaANK~ 76 (142)
T PRK08621 1 MAIIIGADKAGFELKEVVKDYLEDNKYEVVDVTEEGAEDFVDSTLAVAKEVNK----SEDNLGIVIDAYGAGSFMVATKI 76 (142)
T ss_pred CEEEEEeCcchHHHHHHHHHHHHHCCCEEEECCCCCCCCcHHHHHHHHHHHHc----CCCceEEEEcCCChhhhhhhhcC
Confidence 89999999999999999999999999999999983 799999999999998 99999999999999999999999
Q ss_pred CceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHh
Q 021698 90 PGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSC 157 (309)
Q Consensus 90 ~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~ 157 (309)
||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++ ++++++++.|..
T Consensus 77 ~GIRAA~~~d~~~A~~ar~hNnaNVL~lG~r~ig~~~a~~iv~~fL~t~f~g----grh~~Rv~ki~~ 140 (142)
T PRK08621 77 KGMVAAEVSDERSAYMTRGHNNARMITMGSEIVGDGLAKNIIKGFVEGKYDG----GRHQIRVDMLNK 140 (142)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCcEEEECccccCHHHHHHHHHHHHcCCCCC----ccHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999997 799988888775
No 4
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=100.00 E-value=7.4e-56 Score=376.08 Aligned_cols=138 Identities=36% Similarity=0.557 Sum_probs=133.3
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC---C---CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhh
Q 021698 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT---S---DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFA 86 (309)
Q Consensus 13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~---~---~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~a 86 (309)
|||+|||||+||+||+.|++||+++||||+|+|+ + |||++|.+||++|.+ |+++|||||||||+||||+|
T Consensus 1 mkI~igsDhaG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~----g~~~~GIliCGtGiG~siaA 76 (148)
T PRK05571 1 MKIAIGSDHAGFELKEEIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVA----GEADRGILICGTGIGMSIAA 76 (148)
T ss_pred CEEEEEeCCchHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHc----CCCCEEEEEcCCcHHHHHHH
Confidence 8999999999999999999999999999999998 3 699999999999998 99999999999999999999
Q ss_pred cCCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhH
Q 021698 87 NKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCF 158 (309)
Q Consensus 87 NK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~ 158 (309)
|||||||||+|+|+++|+|+|+|||+||||||+|++|+++|++|+++||+|+|++ ++++++++.|..+
T Consensus 77 NK~~GIRAA~~~d~~~A~~ar~hNnaNVL~lG~r~ig~~~a~~iv~~fl~t~F~g----grh~~Rv~ki~~~ 144 (148)
T PRK05571 77 NKVKGIRAALCHDTYSAHLAREHNNANVLALGARVIGPELAKDIVDAFLATEFEG----GRHQRRIDKIDEY 144 (148)
T ss_pred hcCCCeEEEEECCHHHHHHHHHhcCCcEEEECccccCHHHHHHHHHHHHcCCCCC----CcHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999996 7999998888764
No 5
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=100.00 E-value=4.2e-55 Score=377.62 Aligned_cols=141 Identities=30% Similarity=0.428 Sum_probs=134.4
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhc
Q 021698 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFAN 87 (309)
Q Consensus 13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aN 87 (309)
|||+|||||+||+||+.|++||+++||+|+|+|++ |||++|.+||++|.+ |+++|||||||||+||||+||
T Consensus 1 MkI~IgsDhaG~~lK~~l~~~L~~~G~eV~D~G~~~~e~~dYpd~a~~va~~V~~----g~~d~GIliCGTGiG~siaAN 76 (171)
T PRK08622 1 MKIAIGCDHIVTDEKMAVSDYLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVAS----GEADLGVCICGTGVGISNAVN 76 (171)
T ss_pred CEEEEEeCcchHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHc----CCCcEEEEEcCCcHHHHHHHh
Confidence 89999999999999999999999999999999984 699999999999998 999999999999999999999
Q ss_pred CCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhHhh
Q 021698 88 KNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFD 160 (309)
Q Consensus 88 K~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~l~ 160 (309)
||||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++ .+++.++++.|..+-.
T Consensus 77 Kv~GIRAA~~~d~~sA~~aR~hNnaNVL~lG~r~ig~~~a~~iv~~fL~t~F~g---ggrh~~Rv~ki~~~e~ 146 (171)
T PRK08622 77 KVPGIRSALVRDMTSALYAKEELNANVIGFGGKITGELLMCDIIDAFINAEYKP---TEENKKLIEKIDHLEK 146 (171)
T ss_pred cCCCeEEEEeCCHHHHHHHHHhcCCcEEEEChhhcCHHHHHHHHHHHHcCCCCC---CChHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999994 4789988888876443
No 6
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=100.00 E-value=5.4e-55 Score=371.68 Aligned_cols=140 Identities=34% Similarity=0.546 Sum_probs=134.5
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHh--CCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhh
Q 021698 11 HPLKIIAGADSFGAELKDALVSHLRS--LNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVA 83 (309)
Q Consensus 11 ~~mkI~ig~D~~g~~lk~~l~~~l~~--~g~~v~d~g~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~ 83 (309)
+.|||+|||||+||+||++|++||++ +||||+|+|++ |||++|.+||++|.+ ++++|||+|||||+||+
T Consensus 1 ~~mkI~igsDhaG~~lK~~l~~~L~~~~~g~eV~D~G~~~~~~~dYp~~a~~va~~V~~----~~~~~GIliCGtGiG~s 76 (151)
T PTZ00215 1 MQKKVAIGSDHAGFDLKNEIIDYIKNKGKEYKIEDMGTYTAESVDYPDFAEKVCEEVLK----GEADTGILVCGSGIGIS 76 (151)
T ss_pred CCcEEEEEeCCchHHHHHHHHHHHHhccCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhc----CCCcEEEEEcCCcHHHH
Confidence 36899999999999999999999999 99999999984 699999999999998 99999999999999999
Q ss_pred hhhcCCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhH
Q 021698 84 IFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCF 158 (309)
Q Consensus 84 i~aNK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~ 158 (309)
|+||||||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++ ++++++++.|..+
T Consensus 77 iaANK~~GIRAa~~~d~~~A~~ar~hNnaNVL~lGar~ig~~~a~~iv~~fL~t~F~g----grh~~Rv~~i~~~ 147 (151)
T PTZ00215 77 IAANKVKGIRCALCHDHYTARMSRQHNNANVLAFGGRTTGIEVAKEIIDTFLSTPFEG----GRHTERIDKISAI 147 (151)
T ss_pred HHHhcCCCeEEEEECCHHHHHHHHHhcCCcEEEECccccCHHHHHHHHHHHHcCCCCC----ccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999996 7999888887754
No 7
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=100.00 E-value=6.4e-55 Score=376.84 Aligned_cols=141 Identities=30% Similarity=0.428 Sum_probs=134.6
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhc
Q 021698 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFAN 87 (309)
Q Consensus 13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aN 87 (309)
|||+|||||+||+||+.|++||+++||||+|+|++ |||++|.+||++|.+ ++++|||||||||+||||+||
T Consensus 1 MkI~igsDhaG~~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~----g~~~~GIliCGTGiG~siaAN 76 (171)
T TIGR01119 1 MKIAIGCDHIVTDVKMEVSEFLKSKGYEVLDVGTYDFTRTHYPIFGKKVGEAVVS----GEADLGVCICGTGVGINNAVN 76 (171)
T ss_pred CEEEEEeCCchHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHc----CCCCEEEEEcCCcHHHHHHHh
Confidence 89999999999999999999999999999999984 599999999999998 999999999999999999999
Q ss_pred CCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhHhh
Q 021698 88 KNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFD 160 (309)
Q Consensus 88 K~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~l~ 160 (309)
||||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++ .++++++++.|..+-.
T Consensus 77 Kv~GIRAAl~~d~~sA~~ar~hNnaNVL~lGarvig~e~a~~Iv~~fL~t~Feg---ggrh~~Rv~ki~~~e~ 146 (171)
T TIGR01119 77 KVPGVRSALVRDMTSALYAKEELNANVIGFGGAIIGKLLMFDIIDAFIKAEYKP---TEENKKLIAKIKHLET 146 (171)
T ss_pred cCCCeEEEEeCCHHHHHHHHHhcCCcEEEECccccCHHHHHHHHHHHHcCCCCC---CCcHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999994 4799988888886543
No 8
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=100.00 E-value=6.3e-55 Score=368.42 Aligned_cols=136 Identities=33% Similarity=0.477 Sum_probs=130.8
Q ss_pred EEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcC
Q 021698 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANK 88 (309)
Q Consensus 14 kI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK 88 (309)
||+|||||+||+||+.|++||+++||||+|+|++ |||++|.+||++|.+ ++++|||||||||+||||+|||
T Consensus 1 kI~igsDhaG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~----~~~~~GIliCGtGiG~siaANK 76 (143)
T TIGR01120 1 KIAIGSDHAGFILKEEIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAVAG----GEVDGGILICGTGIGMSIAANK 76 (143)
T ss_pred CEEEEeCcchHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHC----CCCceEEEEcCCcHHHHHHHhc
Confidence 6999999999999999999999999999999983 699999999999998 9999999999999999999999
Q ss_pred CCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHh
Q 021698 89 NPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSC 157 (309)
Q Consensus 89 ~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~ 157 (309)
+||||||+|+|+++|+|+|+|||+||||||+|++|+++|++|+++||+|+|++ ++++++++.|..
T Consensus 77 ~~GIraa~~~d~~~A~~ar~hNnaNvl~lG~r~~g~~~a~~iv~~fl~t~f~g----grh~~Rv~~i~~ 141 (143)
T TIGR01120 77 FAGIRAALCSEPYMAQMSRLHNDANVLCLGERVVGLELAKSIVDAWLGTQFEG----GRHQQRVEAITA 141 (143)
T ss_pred CCCeEEEEECCHHHHHHHHHhcCCcEEEECcceeCHHHHHHHHHHHHcCCCCC----CccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999997 688888887764
No 9
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=100.00 E-value=1.3e-54 Score=375.01 Aligned_cols=139 Identities=30% Similarity=0.429 Sum_probs=133.8
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhc
Q 021698 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFAN 87 (309)
Q Consensus 13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aN 87 (309)
|||+|||||+||+||+.|++||+++||+|+|+|++ |||++|.+||++|.+ ++++|||||||||+||||+||
T Consensus 1 MkI~igsDhaG~~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~----g~~d~GIliCGTGiG~siaAN 76 (171)
T PRK12615 1 MKIAIGCDHIVTNEKMAVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKVGEAVVN----GQADLGVCICGTGVGINNAVN 76 (171)
T ss_pred CEEEEEeCchhHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHc----CCCCEEEEEcCCcHHHHHHHh
Confidence 89999999999999999999999999999999984 699999999999998 999999999999999999999
Q ss_pred CCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhH
Q 021698 88 KNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCF 158 (309)
Q Consensus 88 K~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~ 158 (309)
||||||||+|+|+++|+|+|+|||+||||||+|++|+++|++|+++||+|+|++ .+++.++++.|..+
T Consensus 77 K~~GIRAA~~~d~~~A~~ar~hNnaNVL~lG~r~ig~~~a~~Iv~~fL~t~F~g---ggrh~~Rv~ki~~~ 144 (171)
T PRK12615 77 KVPGIRSALVRDMTTALYAKEELNANVIGFGGKITGELLMCDIIDAFIKAEYKE---TEENKKLIAKIAHL 144 (171)
T ss_pred cCCCeEEEEeCCHHHHHHHHHhcCCcEEEEChhhcCHHHHHHHHHHHHcCCCCC---CCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999994 37999888888864
No 10
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=100.00 E-value=4.2e-54 Score=365.81 Aligned_cols=139 Identities=29% Similarity=0.339 Sum_probs=132.9
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC------CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhh
Q 021698 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS------DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFA 86 (309)
Q Consensus 13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~------~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~a 86 (309)
|||+|||||+||+||+.|++||+++||+|+|+|++ |||++|.+||++|.+ +++++||||||||+||||+|
T Consensus 1 MkI~igsDhaG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~----~~~~~GIliCGtGiG~siaA 76 (148)
T TIGR02133 1 MRVVLGHDHAGFEYKEALWLDLAAHEPEVCDVGVYDADDDDDYPCFCIAAAEAVAR----DAADLGIVIGGSGNGEAIAA 76 (148)
T ss_pred CEEEEEeCchhHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCchHHHHHHHHHHhc----CCCceEEEEcCCChhheeee
Confidence 89999999999999999999999999999999982 599999999999998 99999999999999999999
Q ss_pred cCCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhH
Q 021698 87 NKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCF 158 (309)
Q Consensus 87 NK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~ 158 (309)
||+||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++ .++++.+++.|.++
T Consensus 77 NK~~GiRAA~~~d~~sA~~ar~hNnaNVl~lG~r~ig~~~a~~iv~~fl~t~f~~---ggrh~~Rv~~i~~~ 145 (148)
T TIGR02133 77 NKVKGARAALAWDTASAGRARLHNNANVVGAGMRMHGLEEAFRLVFEFLGFEFDA---RSRHARRIDSISEY 145 (148)
T ss_pred cccCCeEEEEECCHHHHHHHHHHcCCcEEEECCcccCHHHHHHHHHHHHCCCCCC---CCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999984 36899888887764
No 11
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=100.00 E-value=3.9e-54 Score=364.00 Aligned_cols=136 Identities=32% Similarity=0.502 Sum_probs=131.2
Q ss_pred EEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCC
Q 021698 15 IIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKN 89 (309)
Q Consensus 15 I~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~ 89 (309)
|+|||||+||+||+.|++||+++||||+|+|++ |||++|.+||++|.+ |+++|||+|||||+||||+||||
T Consensus 1 I~igsDhaG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~----g~~~~GIliCGtGiG~siaANK~ 76 (144)
T TIGR00689 1 IAIGSDHAGLELKSEIIEHLKQKGHEVIDCGTLYDERVDYPDYAKLVADKVVA----GEVSLGILICGTGIGMSIAANKF 76 (144)
T ss_pred CEEeeCcchHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHc----CCCceEEEEcCCcHHHHHHHhcC
Confidence 789999999999999999999999999999983 699999999999998 99999999999999999999999
Q ss_pred CceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhH
Q 021698 90 PGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCF 158 (309)
Q Consensus 90 ~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~ 158 (309)
||||||+|+|+++|+|+|+|||+||||||+|++|+++|++|+++||+|+|++ ++++++++.|..+
T Consensus 77 ~GIraa~~~d~~~A~~ar~hNnaNVl~lGar~ig~~~a~~iv~~fL~t~f~g----grh~~Rv~~i~~~ 141 (144)
T TIGR00689 77 KGIRAALCVDEYTAALARQHNDANVLCLGSRVVGVELALSIVDAFLTTQFEG----GRHQRRIDKIIEY 141 (144)
T ss_pred CCeEEEEECCHHHHHHHHHhcCCcEEEECccccCHHHHHHHHHHHHcCCCCC----CcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999997 7999988888764
No 12
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-53 Score=359.52 Aligned_cols=142 Identities=35% Similarity=0.533 Sum_probs=134.0
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC------CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhh
Q 021698 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS------DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFA 86 (309)
Q Consensus 13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~------~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~a 86 (309)
|||+|||||+|++||+.|++||+++||||+|+|++ +||+|+.+||+.|.+ ++.||||++||||+||+|+|
T Consensus 1 MkIaig~Dhag~~lK~~I~~~Lk~~g~~v~D~G~~~~~~~~dyp~~a~~va~~v~~----~~~d~GIliCGTGiG~~iaA 76 (151)
T COG0698 1 MKIAIGSDHAGYELKEIIIDHLKSKGYEVIDFGTYTDEGSVDYPDYAKKVAEAVLN----GEADLGILICGTGIGMSIAA 76 (151)
T ss_pred CcEEEEcCcccHHHHHHHHHHHHHCCCEEEeccccCCCCCcchHHHHHHHHHHHHc----CCCCeeEEEecCChhHHHHh
Confidence 89999999999999999999999999999999985 599999999999998 89999999999999999999
Q ss_pred cCCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhHhhh
Q 021698 87 NKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDK 161 (309)
Q Consensus 87 NK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~l~~ 161 (309)
||+||||||+|+|+++|+|||+|||+||||||+|++|+++|+.|+|+||+++|. +.++++.+.+.|.++...
T Consensus 77 NKv~GiraAl~~D~~sA~~ar~hNnaNvl~~G~riig~~lA~~ivd~fl~~~f~---~ggrh~~Rv~~i~~~~~~ 148 (151)
T COG0698 77 NKVPGIRAALVSDPTSAKLAREHNNANVLCLGARIIGPELAEDIVDAFLETEFK---EGGRHQRRVDKIAEYERK 148 (151)
T ss_pred hccCCeEEEEecCHHHHHHHHhcCCCcEEEechhhccHHHHHHHHHHHHhcccc---CCCchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999994 237888888888776543
No 13
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=100.00 E-value=9.9e-54 Score=360.85 Aligned_cols=134 Identities=37% Similarity=0.564 Sum_probs=123.1
Q ss_pred EEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCCC-----CcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcC
Q 021698 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSD-----YYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANK 88 (309)
Q Consensus 14 kI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~~-----y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK 88 (309)
||+|||||+|++||+.|++||+++||||+|+|+++ ||+++.+||++|++ |+++|||++||||+||+|+|||
T Consensus 1 KI~igsDh~g~~lK~~i~~~L~~~g~eV~D~G~~~~~~~dy~~~a~~va~~V~~----~~~d~GIliCgtGiG~~iaANK 76 (140)
T PF02502_consen 1 KIAIGSDHAGFELKEAIKEYLEEKGYEVIDFGTYSEDSVDYPDFAEKVAEAVAS----GEADRGILICGTGIGMSIAANK 76 (140)
T ss_dssp EEEEEE-GGGHHHHHHHHHHHHHTTEEEEEESESSTST--HHHHHHHHHHHHHT----TSSSEEEEEESSSHHHHHHHHT
T ss_pred CEEEEeCHHHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHc----ccCCeEEEEcCCChhhhhHhhc
Confidence 89999999999999999999999999999999974 99999999999999 9999999999999999999999
Q ss_pred CCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHH
Q 021698 89 NPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKL 155 (309)
Q Consensus 89 ~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I 155 (309)
|||||||+|+|+++|+|+|+|||+||||||+|++|++++++|+++||+|+|++ +++++++++|
T Consensus 77 ~~GIrAa~~~d~~~A~~ar~hNdaNVL~lG~~~~~~~~a~~i~~~~l~t~f~~----grh~~Rv~~i 139 (140)
T PF02502_consen 77 VPGIRAALCSDPYSAKMAREHNDANVLCLGARVIGEELAKEIVDAFLNTEFEG----GRHQRRVDKI 139 (140)
T ss_dssp STT--EEE-SSHHHHHHHHHTT--SEEEEETTTSHHHHHHHHHHHHHHGGHHH----HHHHHHHHHH
T ss_pred CCCEEEEeeCCHHHHHHHHHhcCCcEEEechhhccHHHHHHHHHHHhCCCCCc----ccHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999996 7777776655
No 14
>PRK09273 hypothetical protein; Provisional
Probab=100.00 E-value=9.9e-45 Score=321.19 Aligned_cols=137 Identities=23% Similarity=0.274 Sum_probs=129.2
Q ss_pred cEEEEEeCcccHH----HHHHHHHHHHhCCCcEEEecC-------CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchh
Q 021698 13 LKIIAGADSFGAE----LKDALVSHLRSLNIDVEDLGT-------SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVG 81 (309)
Q Consensus 13 mkI~ig~D~~g~~----lk~~l~~~l~~~g~~v~d~g~-------~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G 81 (309)
|||++-...+.-. +-++|++||+++||+|+|+|+ .|||++|.+||+.|.+ |+++|||++||||+|
T Consensus 1 mkiali~e~sqa~kn~~i~~~L~~~L~~~G~eV~D~G~~~~~~~s~dYpd~a~~vA~~V~~----g~~d~GIliCGTGiG 76 (211)
T PRK09273 1 MKIALINENSQAAKNAIIYEALKKVADPKGHEVFNYGMYDEEDHQLTYVQNGIMASILLNS----KAVDFVVTGCGTGQG 76 (211)
T ss_pred CeEEeecccchhhhhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHc----CCCCEEEEEcCcHHH
Confidence 8999998877663 568899999999999999997 2699999999999998 999999999999999
Q ss_pred hhhhhcCCCceEEEEeCCHHHHHHHHhhcCcceeeeccc----ccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhH
Q 021698 82 VAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGM----STSKESAVEILDTWLKTPFKAPCPASGLKPWDE 153 (309)
Q Consensus 82 ~~i~aNK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~----~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~ 153 (309)
|+|+||||||||||+|+|+++|+|+|+|||+||||||+| |+|+++|++|+++||+++|++|||.++.+|..+
T Consensus 77 ~siAANK~pGIraalc~d~~sA~lar~hNnaNVL~Lg~r~~~g~~g~~~a~~Ive~fl~tef~gGyp~er~~~~~~ 152 (211)
T PRK09273 77 AMLALNSFPGVVCGYCIDPTDAYLFAQINNGNALSLPFAKGFGWGAELNLRYIFEKLFTGERGEGYPKERAEPQQR 152 (211)
T ss_pred HHHHHhcCCCeEEEEeCCHHHHHHHHHhcCCcEEEEcCCcCCCcccHHHHHHHHHHHHcCCccCCCChHHhhHHHh
Confidence 999999999999999999999999999999999999999 999999999999999999999999999998643
No 15
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.44 E-value=6.9e-13 Score=97.88 Aligned_cols=67 Identities=27% Similarity=0.432 Sum_probs=61.6
Q ss_pred EEEEcCCCcCCccccCcc-EEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEE
Q 021698 217 IVRFKAGSVEPAHHHTFG-HDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW 285 (309)
Q Consensus 217 ~v~l~pG~~~p~H~H~~~-e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~ 285 (309)
+++++||+..++|+|+.. |++||++|++++ ..+++.+.+++||++++|++++|++.|.++.++.+++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~--~~~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~ 69 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTL--TVDGERVELKPGDAIYIPPGVPHQVRNPGDEPARFLV 69 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEE--EETTEEEEEETTEEEEEETTSEEEEEEESSSEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEE--EEccEEeEccCCEEEEECCCCeEEEEECCCCCEEEEE
Confidence 578999999999999998 999999999999 6899999999999999999999999999987776544
No 16
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.41 E-value=5.6e-12 Score=111.09 Aligned_cols=140 Identities=16% Similarity=0.134 Sum_probs=98.6
Q ss_pred HHHHHHHhcCCCCCCCCCCCCchhhHHHHhHhhhhccccccccCCCCCCCCCCCCccceeeeeecCCCCceeecCCceEE
Q 021698 128 VEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIGKNDKLDSDSSGSTCSICCLVKNRELNPVEMIPGGSMK 207 (309)
Q Consensus 128 ~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~l~~s~~el~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~pgg~~~ 207 (309)
...+..|.+... .++...+.+|+++|++++.+|+..+.+...+ ..+.+..+.... ...+..++
T Consensus 34 ~~~is~~E~g~~------~p~~~~l~~ia~~l~v~~~~l~~~~~~~~~~----------~~v~~~~e~~~~-~~~g~~~~ 96 (185)
T PRK09943 34 HSAISTIEQDKV------SPAISTLQKLLKVYGLSLSEFFSEPEKPDEP----------QVVINQDDLIEM-GSQGVSMK 96 (185)
T ss_pred HHHHHHHHcCCC------CCCHHHHHHHHHHhCCCHHHHccCccccCCc----------ceEEchhHhhcc-ccCCceEE
Confidence 455677776544 4677889999999999999998653211111 013333322111 12344455
Q ss_pred EeeeCC-C-e---EEEEEcCCCcC-CccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEE
Q 021698 208 IIRESP-T-S---AIVRFKAGSVE-PAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF 281 (309)
Q Consensus 208 il~~~~-~-~---~~v~l~pG~~~-p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~ 281 (309)
++.... . . .+.+++||... +.|+|+..|++||++|++++ .++++.+.|.+||++++|++++|+++|.++..+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~--~~~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~ 174 (185)
T PRK09943 97 LVHNGNPNRTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVL--TINGQDYHLVAGQSYAINTGIPHSFSNTSAGIC 174 (185)
T ss_pred EeccCCCCCeeEEEEEEccCCCCcccccccCCcEEEEEEEeEEEE--EECCEEEEecCCCEEEEcCCCCeeeeCCCCCCe
Confidence 543221 1 1 34577898865 57889999999999999999 689999999999999999999999999988777
Q ss_pred EEEEc
Q 021698 282 FIKWD 286 (309)
Q Consensus 282 ~i~~~ 286 (309)
.++|.
T Consensus 175 ~~l~~ 179 (185)
T PRK09943 175 RIISA 179 (185)
T ss_pred EEEEE
Confidence 66664
No 17
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.25 E-value=1.7e-10 Score=95.98 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=58.3
Q ss_pred EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEE-e-CCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698 216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNL-T-KGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK 284 (309)
Q Consensus 216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~-~-~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~ 284 (309)
..++++||+..+.|+|...|++|||+|++++ . + +++++.|.|||++++|++.+|+++|.++..++.+
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~--~~i~~g~~~~L~aGD~i~~~~~~~H~~~N~e~~~~l~v 106 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEV--EDLATGEVHPIRPGTMYALDKHDRHYLRAGEDMRLVCV 106 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEE--EEcCCCEEEEeCCCeEEEECCCCcEEEEcCCCEEEEEE
Confidence 4579999999898988777899999999999 6 6 4999999999999999999999999865555433
No 18
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=1.3e-10 Score=96.71 Aligned_cols=84 Identities=30% Similarity=0.472 Sum_probs=67.6
Q ss_pred eeecCCceEEEeeeCCC--eEEEEEcCCCcCCccccC-ccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEE
Q 021698 198 VEMIPGGSMKIIRESPT--SAIVRFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274 (309)
Q Consensus 198 ~~~~pgg~~~il~~~~~--~~~v~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~ 274 (309)
....+++.+..+..... ...+.++||....+|.|. ..|.+||++|++.+ .++++...|++||+++||+|++|+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v--~~~~~~~~v~~gd~~~iP~g~~H~~~ 96 (127)
T COG0662 19 AEFRPWGSYTVLDAGDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKV--TIGGEEVEVKAGDSVYIPAGTPHRVR 96 (127)
T ss_pred EEEeCCcceeecccCCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEE--EECCEEEEecCCCEEEECCCCcEEEE
Confidence 34566777776644333 367889999997665554 58889999999999 78999999999999999999999999
Q ss_pred EcCCeEEEE
Q 021698 275 YYEETEFFI 283 (309)
Q Consensus 275 n~~d~~~~i 283 (309)
|.+..++.+
T Consensus 97 N~G~~~L~l 105 (127)
T COG0662 97 NTGKIPLVL 105 (127)
T ss_pred cCCCcceEE
Confidence 999876654
No 19
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.22 E-value=5.6e-11 Score=98.82 Aligned_cols=63 Identities=37% Similarity=0.603 Sum_probs=58.6
Q ss_pred EEEEEcCCCcCCccccC-ccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeE
Q 021698 216 AIVRFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE 280 (309)
Q Consensus 216 ~~v~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~ 280 (309)
..+.++||+..++|.|+ ..+.+|||+|++++ .++++.+.+++||++++|+|++|++.|.++..
T Consensus 46 ~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~--~~~g~~~~l~~Gd~i~ip~g~~H~~~a~~~~~ 109 (131)
T COG1917 46 VLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTV--QLEGEKKELKAGDVIIIPPGVVHGLKAVEDEP 109 (131)
T ss_pred EEEEECCCcccccccCCCcceEEEEEecEEEE--EecCCceEecCCCEEEECCCCeeeeccCCCCc
Confidence 57899999999999999 77999999999999 56799999999999999999999999999873
No 20
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.07 E-value=1.1e-09 Score=109.70 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=75.0
Q ss_pred eeecCCceEEEeeeCCCe--EEEEEcCCCcCCccccC-ccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEE
Q 021698 198 VEMIPGGSMKIIRESPTS--AIVRFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274 (309)
Q Consensus 198 ~~~~pgg~~~il~~~~~~--~~v~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~ 274 (309)
....|||..+.+...... ..++++||+..+.|.|. ..|.+||++|++++ .++++++.|++||++++|++++|++.
T Consensus 359 ~~~~pWG~~~~~~~~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v--~~dg~~~~l~~GDsi~ip~~~~H~~~ 436 (468)
T TIGR01479 359 EVYRPWGKYDSIDQGDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARV--TIGDETLLLTENESTYIPLGVIHRLE 436 (468)
T ss_pred eEECCCCceEEEecCCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEE--EECCEEEEecCCCEEEECCCCcEEEE
Confidence 345899999888776653 67899999987766554 34556999999999 78999999999999999999999999
Q ss_pred EcCCeEEEEEEcCCcc
Q 021698 275 YYEETEFFIKWDGRWD 290 (309)
Q Consensus 275 n~~d~~~~i~~~g~~~ 290 (309)
|.+++++.++|.....
T Consensus 437 N~g~~~~~~i~v~~~~ 452 (468)
T TIGR01479 437 NPGKIPLELIEVQSGS 452 (468)
T ss_pred cCCCCCEEEEEEEcCC
Confidence 9998888777765433
No 21
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.07 E-value=1.6e-09 Score=92.99 Aligned_cols=85 Identities=24% Similarity=0.322 Sum_probs=72.1
Q ss_pred eecCCceEEEeeeCCCe--EEEEEcCCCcCCccccC-ccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEE
Q 021698 199 EMIPGGSMKIIRESPTS--AIVRFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKY 275 (309)
Q Consensus 199 ~~~pgg~~~il~~~~~~--~~v~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n 275 (309)
...|||.++++..++.. ..+++.||...++|.|. ..|..+|++|+..+ .++++.+.+.+||+++||+|..|++.|
T Consensus 47 ~~rpWG~~~~l~~~~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v--~~~~~~~~~~~g~sv~Ip~g~~H~i~n 124 (151)
T PF01050_consen 47 VYRPWGSYEVLDEGEGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEV--TLDDEEFTLKEGDSVYIPRGAKHRIEN 124 (151)
T ss_pred EecCCcEEEEEEccCCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEE--EECCEEEEEcCCCEEEECCCCEEEEEC
Confidence 45799999999877664 67899999999887775 45666789999999 789999999999999999999999999
Q ss_pred cCCeEEEEEE
Q 021698 276 YEETEFFIKW 285 (309)
Q Consensus 276 ~~d~~~~i~~ 285 (309)
.+++++.++=
T Consensus 125 ~g~~~L~~IE 134 (151)
T PF01050_consen 125 PGKTPLEIIE 134 (151)
T ss_pred CCCcCcEEEE
Confidence 9977665443
No 22
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.05 E-value=1.2e-09 Score=109.51 Aligned_cols=90 Identities=17% Similarity=0.151 Sum_probs=72.5
Q ss_pred eecCCceEEEeeeCCCe--EEEEEcCCCcCCcccc-CccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEE
Q 021698 199 EMIPGGSMKIIRESPTS--AIVRFKAGSVEPAHHH-TFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKY 275 (309)
Q Consensus 199 ~~~pgg~~~il~~~~~~--~~v~l~pG~~~p~H~H-~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n 275 (309)
...|||....+...... ..++++||+..+.|.| ...|..||++|++++ .++++++.|.+||++++|+|.+|+++|
T Consensus 369 ~~rpWG~~~~l~~g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v--~idg~~~~L~~GDSi~ip~g~~H~~~N 446 (478)
T PRK15460 369 VYRPWGKYDSIDAGDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKV--TIDGDIKLLGENESIYIPLGATHCLEN 446 (478)
T ss_pred EECCCCceEeecCCCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEE--EECCEEEEecCCCEEEECCCCcEEEEc
Confidence 35788888877555543 6789999987654433 234888999999999 789999999999999999999999999
Q ss_pred cCCeEEEEEEcCCcc
Q 021698 276 YEETEFFIKWDGRWD 290 (309)
Q Consensus 276 ~~d~~~~i~~~g~~~ 290 (309)
.++.++.++|...-.
T Consensus 447 ~g~~~l~iI~V~~g~ 461 (478)
T PRK15460 447 PGKIPLDLIEVRSGS 461 (478)
T ss_pred CCCCCEEEEEEEcCC
Confidence 998888777765443
No 23
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=99.02 E-value=2.9e-09 Score=83.43 Aligned_cols=79 Identities=30% Similarity=0.496 Sum_probs=62.9
Q ss_pred ecCCceEEEeeeCC-----CeEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEE
Q 021698 200 MIPGGSMKIIRESP-----TSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274 (309)
Q Consensus 200 ~~pgg~~~il~~~~-----~~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~ 274 (309)
..||.+++.|...+ ...++++.||+..|.|.|+..|++|||+|++.. +++. ..+||+++.|+|..|.+.
T Consensus 6 ~~~Gv~~~~L~~~~~~~g~~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d----~~~~--~~~G~~~~~p~g~~h~~~ 79 (91)
T PF12973_consen 6 PRPGVSVKPLHRDEGETGERVSLLRLEPGASLPRHRHPGGEEILVLEGELSD----GDGR--YGAGDWLRLPPGSSHTPR 79 (91)
T ss_dssp CSTTEEEEEEEECSSSTTEEEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE----TTCE--EETTEEEEE-TTEEEEEE
T ss_pred CCCCEEEEEeccCCCcccCEEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE----CCcc--CCCCeEEEeCCCCccccC
Confidence 46788888777554 247899999999999999999999999999886 4444 489999999999999999
Q ss_pred EcCCeEEEEE
Q 021698 275 YYEETEFFIK 284 (309)
Q Consensus 275 n~~d~~~~i~ 284 (309)
..+++.++++
T Consensus 80 s~~gc~~~vk 89 (91)
T PF12973_consen 80 SDEGCLILVK 89 (91)
T ss_dssp ESSCEEEEEE
T ss_pred cCCCEEEEEE
Confidence 8777776654
No 24
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.97 E-value=3.3e-09 Score=98.67 Aligned_cols=65 Identities=28% Similarity=0.367 Sum_probs=59.5
Q ss_pred EEEEEcCCCcCCc-cccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698 216 AIVRFKAGSVEPA-HHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 216 ~~v~l~pG~~~p~-H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~ 282 (309)
.+++++||+.++. |+|.++|..|||+|+..+ .++++++.+.+||++||||+++|++.|.+++++.
T Consensus 182 ~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~--~~~g~~~~V~~GD~i~i~~~~~h~~~~~G~~~~~ 247 (260)
T TIGR03214 182 HILSFEPGASHPYIETHVMEHGLYVLEGKGVY--NLDNNWVPVEAGDYIWMGAYCPQACYAGGRGEFR 247 (260)
T ss_pred EEEEECCCcccCCcccccceeEEEEEeceEEE--EECCEEEEecCCCEEEECCCCCEEEEecCCCcEE
Confidence 6799999999996 777888899999999999 7899999999999999999999999999987654
No 25
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=98.95 E-value=7.8e-09 Score=87.68 Aligned_cols=67 Identities=24% Similarity=0.280 Sum_probs=57.2
Q ss_pred EEEEEcCCCcCCccccC-ccEEEEEEeCEEEEEEEeCCe------EEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698 216 AIVRFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLTKGE------RFDLTVGDYLFTPAGDVHRVKYYEETEFFIK 284 (309)
Q Consensus 216 ~~v~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~~------~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~ 284 (309)
..++++||+..+.|+|+ ..|++||++|++++ .++++ .+.+++||++++|+++.|++.|.++..+.++
T Consensus 33 ~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~--~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l 106 (146)
T smart00835 33 ARVNLEPGGMLPPHYHPRATELLYVVRGEGRV--GVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFV 106 (146)
T ss_pred EEEEecCCcCcCCeeCCCCCEEEEEEeCeEEE--EEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEE
Confidence 46789999999999997 67899999999999 44444 8999999999999999999999886655443
No 26
>PRK11171 hypothetical protein; Provisional
Probab=98.95 E-value=4e-09 Score=98.38 Aligned_cols=65 Identities=26% Similarity=0.358 Sum_probs=59.3
Q ss_pred EEEEEcCCCcCCc-cccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698 216 AIVRFKAGSVEPA-HHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 216 ~~v~l~pG~~~p~-H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~ 282 (309)
..++++||+.++. |+|.++|.+||++|++++ .++++++.|++||+++++++.+|++.|.+++.+.
T Consensus 187 ~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~--~~~~~~~~l~~GD~i~~~~~~~h~~~N~g~~~~~ 252 (266)
T PRK11171 187 NIVTFEPGASIPFVETHVMEHGLYVLEGKGVY--RLNNDWVEVEAGDFIWMRAYCPQACYAGGPGPFR 252 (266)
T ss_pred EEEEECCCCEEccCcCCCceEEEEEEeCEEEE--EECCEEEEeCCCCEEEECCCCCEEEECCCCCcEE
Confidence 5689999999988 478889999999999999 7899999999999999999999999999876654
No 27
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=98.93 E-value=7.9e-09 Score=100.57 Aligned_cols=83 Identities=23% Similarity=0.436 Sum_probs=66.4
Q ss_pred eecCCceEEEeeeC--CC-----eEEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEe---CCeEEEecCCcEEEECC
Q 021698 199 EMIPGGSMKIIRES--PT-----SAIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLT---KGERFDLTVGDYLFTPA 267 (309)
Q Consensus 199 ~~~pgg~~~il~~~--~~-----~~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~---~~~~~~L~pGd~i~iP~ 267 (309)
...+||+.+++... +. ...++++||+..++|||+. .|+.||++|++++++.. +++++.+++||.+|+|+
T Consensus 224 ~~~~gG~~~~~~~~~~p~~~~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~ 303 (367)
T TIGR03404 224 KQVPGGTVRIADSTNFPVSKTIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPR 303 (367)
T ss_pred eecCCceEEEEChhhccCcceEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECC
Confidence 45678888876432 21 2678999999999999995 68899999999995221 25688999999999999
Q ss_pred CCcEEEEEcCCeEE
Q 021698 268 GDVHRVKYYEETEF 281 (309)
Q Consensus 268 g~~H~~~n~~d~~~ 281 (309)
|..|+++|.+++.+
T Consensus 304 g~~H~i~N~G~e~l 317 (367)
T TIGR03404 304 NMGHYVENTGDETL 317 (367)
T ss_pred CCeEEEEECCCCCE
Confidence 99999999986553
No 28
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.89 E-value=8.4e-09 Score=87.86 Aligned_cols=70 Identities=21% Similarity=0.251 Sum_probs=61.5
Q ss_pred EEEEEcCCCcC-CccccCc-cEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCC--CcEEEEEcCCeEEEEEEcC
Q 021698 216 AIVRFKAGSVE-PAHHHTF-GHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAG--DVHRVKYYEETEFFIKWDG 287 (309)
Q Consensus 216 ~~v~l~pG~~~-p~H~H~~-~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g--~~H~~~n~~d~~~~i~~~g 287 (309)
.+.+++||..+ ..|||.. +|++|||+|++++ ..++..+.|.|||++-+|+| +-|.+.|.++..+.+...|
T Consensus 45 n~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l--~~d~~e~~lrpGD~~gFpAG~~~aHhliN~s~~~~~yL~vG 118 (161)
T COG3837 45 NLEIVEPGGESSLRHWHSAEDEFVYILEGEGTL--REDGGETRLRPGDSAGFPAGVGNAHHLINRSDVILRYLEVG 118 (161)
T ss_pred ceEEeCCCCccccccccccCceEEEEEcCceEE--EECCeeEEecCCceeeccCCCcceeEEeecCCceEEEEEec
Confidence 46789999876 6799975 5778999999999 67999999999999999999 8899999999888777665
No 29
>PRK11171 hypothetical protein; Provisional
Probab=98.87 E-value=2.5e-08 Score=93.10 Aligned_cols=69 Identities=19% Similarity=0.325 Sum_probs=58.4
Q ss_pred EEEEEcCCCcCCcccc--CccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEc
Q 021698 216 AIVRFKAGSVEPAHHH--TFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD 286 (309)
Q Consensus 216 ~~v~l~pG~~~p~H~H--~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~ 286 (309)
.+++++||+....|.| ..+|++||++|++++ .++++++.|.+||++++|++++|+++|.++..+.++|.
T Consensus 64 ~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v--~~~g~~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v 134 (266)
T PRK11171 64 YLVEVEPGGGSDQPEPDEGAETFLFVVEGEITL--TLEGKTHALSEGGYAYLPPGSDWTLRNAGAEDARFHWI 134 (266)
T ss_pred EEEEECCCCcCCCCCCCCCceEEEEEEeCEEEE--EECCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence 5678999987665554 357889999999999 68999999999999999999999999998776655554
No 30
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.86 E-value=1.5e-08 Score=94.23 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=58.0
Q ss_pred EEEEEcCCCcCC-ccccCc-cEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEc
Q 021698 216 AIVRFKAGSVEP-AHHHTF-GHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD 286 (309)
Q Consensus 216 ~~v~l~pG~~~p-~H~H~~-~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~ 286 (309)
.+++++||+..+ .|+|+. +|++||++|++++ .++++++.|.+||++|+|++.+|+++|.++..+.++|.
T Consensus 61 ~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v--~~~g~~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v 131 (260)
T TIGR03214 61 YIVEVHPGGGNTTGFGGEGIETFLFVISGEVNV--TAEGETHELREGGYAYLPPGSKWTLANAQAEDARFFLY 131 (260)
T ss_pred EEEEECCCCcCCCCCCCCceEEEEEEEeCEEEE--EECCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence 578899987654 455665 6889999999999 68999999999999999999999999998766655543
No 31
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=98.81 E-value=6e-08 Score=94.44 Aligned_cols=68 Identities=25% Similarity=0.463 Sum_probs=57.0
Q ss_pred EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEe-CCeEE--EecCCcEEEECCCCcEEEEEcCC-eEEEE
Q 021698 216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLT-KGERF--DLTVGDYLFTPAGDVHRVKYYEE-TEFFI 283 (309)
Q Consensus 216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~-~~~~~--~L~pGd~i~iP~g~~H~~~n~~d-~~~~i 283 (309)
..+++.||+..++|||...|++||++|++++++.. +++.+ .|++||+++||+|.+|.++|.++ ..+++
T Consensus 70 ~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~~H~~~n~~~~~~~l~ 141 (367)
T TIGR03404 70 VNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLL 141 (367)
T ss_pred eEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCCeEEEEECCCCeEEEE
Confidence 67899999999999999999999999999996321 35666 49999999999999999999864 34443
No 32
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.79 E-value=3.8e-08 Score=84.80 Aligned_cols=68 Identities=12% Similarity=0.089 Sum_probs=55.0
Q ss_pred EEEE-cCCCcCCccccCccEEEEEEeCEEEEEEEeCCe--EEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698 217 IVRF-KAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGE--RFDLTVGDYLFTPAGDVHRVKYYEETEFFIK 284 (309)
Q Consensus 217 ~v~l-~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~--~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~ 284 (309)
++.+ -||....+|.|+.+|++|+++|++.+.+..+++ ...|++||++++|+|++|+....+++..+++
T Consensus 31 v~~vgGpn~R~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r~~~t~~LvI 101 (159)
T TIGR03037 31 VTVVGGPNARTDFHDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQRPAGSIGLVI 101 (159)
T ss_pred EEEeCCCCCCcccccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCcccccCCCcEEEEE
Confidence 3344 566678899999999999999999996333343 8999999999999999999988777766543
No 33
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.77 E-value=5.3e-08 Score=85.15 Aligned_cols=64 Identities=13% Similarity=0.068 Sum_probs=54.2
Q ss_pred cCCCcCCccccCccEEEEEEeCEEEEEEEeCC--eEEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698 221 KAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG--ERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK 284 (309)
Q Consensus 221 ~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~--~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~ 284 (309)
-||....+|.|+.+|++|+++|++.+.+..++ +...|++||++++|+|++|+.+...++..+++
T Consensus 42 Gpn~r~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r~~~tv~Lvi 107 (177)
T PRK13264 42 GPNARTDFHYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQREAGSIGLVI 107 (177)
T ss_pred cCCcccccccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCccCCCeEEEEE
Confidence 57778899999999999999999999533255 58999999999999999999988777766554
No 34
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=98.72 E-value=1.9e-07 Score=79.02 Aligned_cols=62 Identities=26% Similarity=0.343 Sum_probs=50.4
Q ss_pred EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCC--------eEEE--ecCCcEEEECCCCcEEEEEcC
Q 021698 216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG--------ERFD--LTVGDYLFTPAGDVHRVKYYE 277 (309)
Q Consensus 216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~--------~~~~--L~pGd~i~iP~g~~H~~~n~~ 277 (309)
....+.||+...+|||...+++||++|++++++...+ .... +++||.+++|+|.+|++.|.+
T Consensus 37 ~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~ 108 (144)
T PF00190_consen 37 RRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWIINDG 108 (144)
T ss_dssp EEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEEECS
T ss_pred EeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEEcCC
Confidence 3466799999999999888999999999998644443 2344 999999999999999999997
No 35
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.72 E-value=4.6e-08 Score=79.14 Aligned_cols=58 Identities=24% Similarity=0.418 Sum_probs=44.1
Q ss_pred CCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEE
Q 021698 222 AGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF 281 (309)
Q Consensus 222 pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~ 281 (309)
++...++|+|+.-++.||++|+.++ .++++.+.++|||.+++|||.+|++...++...
T Consensus 12 ~~~~~~~h~h~~~~i~~v~~G~~~~--~~~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~ 69 (136)
T PF02311_consen 12 PNFEFPPHWHDFYEIIYVLSGEGTL--HIDGQEYPLKPGDLFLIPPGQPHSYYPDSNEPW 69 (136)
T ss_dssp TT-SEEEETT-SEEEEEEEEE-EEE--EETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEE
T ss_pred CCCccCCEECCCEEEEEEeCCEEEE--EECCEEEEEECCEEEEecCCccEEEecCCCCCE
Confidence 3445678999999999999999999 789999999999999999999999988885333
No 36
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.71 E-value=4.2e-08 Score=79.97 Aligned_cols=67 Identities=22% Similarity=0.398 Sum_probs=55.0
Q ss_pred EEEEEcCCCcCCccccCccE-EEEEEeCEEEEEEEe-CCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698 216 AIVRFKAGSVEPAHHHTFGH-DLVVLEGKKSVWNLT-KGERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 216 ~~v~l~pG~~~p~H~H~~~e-~vyVl~G~l~v~~~~-~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~ 282 (309)
.+++++||.....|.|...| .+||++|+..+|+.. =+....+.|||++|||||++|.-.|.++..+.
T Consensus 49 ~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s 117 (142)
T COG4101 49 HLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLS 117 (142)
T ss_pred EEEeeCCCccccccccccccEEEEEEeceeeeeeccceeeeEEecCCCeEEcCCCCCCcccccCCCCeE
Confidence 57899999999999998765 579999999997311 12457899999999999999999999865543
No 37
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=98.63 E-value=2.3e-07 Score=82.57 Aligned_cols=65 Identities=20% Similarity=0.289 Sum_probs=52.8
Q ss_pred EEEEEcCCCc------CCccccCc---cEEEEEEeCEEEEEEEeCCe-----EEEecCCcEEEECCCCcEEEEEcCCeEE
Q 021698 216 AIVRFKAGSV------EPAHHHTF---GHDLVVLEGKKSVWNLTKGE-----RFDLTVGDYLFTPAGDVHRVKYYEETEF 281 (309)
Q Consensus 216 ~~v~l~pG~~------~p~H~H~~---~e~vyVl~G~l~v~~~~~~~-----~~~L~pGd~i~iP~g~~H~~~n~~d~~~ 281 (309)
.+.+++||.. .+.|.|+. .|+.||++|+..+ .+++. .+.++|||.++||||..|++.|.++.++
T Consensus 71 g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~--~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN~G~epl 148 (191)
T PRK04190 71 GTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLM--LLQDPEGEARWIEMEPGTVVYVPPYWAHRSVNTGDEPL 148 (191)
T ss_pred EEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEE--EEecCCCcEEEEEECCCCEEEECCCCcEEeEECCCCCE
Confidence 4678899885 45699964 4888999999998 44433 6899999999999999999999997654
Q ss_pred E
Q 021698 282 F 282 (309)
Q Consensus 282 ~ 282 (309)
.
T Consensus 149 ~ 149 (191)
T PRK04190 149 V 149 (191)
T ss_pred E
Confidence 3
No 38
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.55 E-value=3.1e-07 Score=77.71 Aligned_cols=81 Identities=23% Similarity=0.390 Sum_probs=48.6
Q ss_pred EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeC-------CeEEEecCCcEEEECCCCcEEEEEcCC-eE---EEEE
Q 021698 216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK-------GERFDLTVGDYLFTPAGDVHRVKYYEE-TE---FFIK 284 (309)
Q Consensus 216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~-------~~~~~L~pGd~i~iP~g~~H~~~n~~d-~~---~~i~ 284 (309)
.+.++.||...|.|+|.-+|.++||+|+.++.+... -+.+.+.|++.+.||++.+|+++|.++ ++ ++++
T Consensus 47 wlQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlqvlVii 126 (167)
T PF02041_consen 47 WLQTFAPGSATPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQVLVII 126 (167)
T ss_dssp EEEEE-TT-B--EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EEEEEEE
T ss_pred EeeeecCCCCCCCccccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceEEEEEe
Confidence 457899999999999999999999999999842111 145788899999999999999999983 33 3456
Q ss_pred EcCCcccccchh
Q 021698 285 WDGRWDMFFDED 296 (309)
Q Consensus 285 ~~g~~~i~~~~~ 296 (309)
...+..+|+.+|
T Consensus 127 SrpPvkvf~y~d 138 (167)
T PF02041_consen 127 SRPPVKVFIYDD 138 (167)
T ss_dssp ESSS--EEEESS
T ss_pred cCCCeEEEEecc
Confidence 666777777665
No 39
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=98.46 E-value=1.1e-06 Score=78.61 Aligned_cols=67 Identities=19% Similarity=0.242 Sum_probs=57.1
Q ss_pred EEEEEcCCCcCCccccCcc-E--EEEEEeCEEEEEEEeCC---eEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698 216 AIVRFKAGSVEPAHHHTFG-H--DLVVLEGKKSVWNLTKG---ERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 216 ~~v~l~pG~~~p~H~H~~~-e--~vyVl~G~l~v~~~~~~---~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~ 282 (309)
.++.+++|+....|||+.. + +.|||+|+.++.+...+ .+..+++||.+|||++--|+..|+++.+++
T Consensus 83 ~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLv 155 (209)
T COG2140 83 AEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLV 155 (209)
T ss_pred eEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEE
Confidence 6789999999999999853 3 77899999998544444 668899999999999999999999988764
No 40
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.46 E-value=4.8e-06 Score=75.63 Aligned_cols=71 Identities=23% Similarity=0.486 Sum_probs=54.7
Q ss_pred EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEE-EEEEcCCcc
Q 021698 216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF-FIKWDGRWD 290 (309)
Q Consensus 216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~-~i~~~g~~~ 290 (309)
.++++.. +..+| ++.+.|+.||++|++++ .++++++.++|||++|||+|..|.+...+...+ ++++++.|.
T Consensus 160 Gf~~~~~-~sf~w-tl~~dEi~YVLEGe~~l--~IdG~t~~l~pGDvlfIPkGs~~hf~tp~~aRflyV~~Pa~w~ 231 (233)
T PRK15457 160 GFMQWEN-AFFPW-TLNYDEIDMVLEGELHV--RHEGETMIAKAGDVMFIPKGSSIEFGTPSSVRFLYVAWPANWQ 231 (233)
T ss_pred EEEEEec-Cccce-eccceEEEEEEEeEEEE--EECCEEEEeCCCcEEEECCCCeEEecCCCCeeEEEEEecCccc
Confidence 4566664 33333 34678999999999999 789999999999999999999987766655544 567777664
No 41
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.37 E-value=9e-07 Score=83.79 Aligned_cols=62 Identities=16% Similarity=0.108 Sum_probs=53.6
Q ss_pred EEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeE
Q 021698 217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE 280 (309)
Q Consensus 217 ~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~ 280 (309)
...-++....++|||...|+.|+++|++.+ .++++.+.++|||.++++++++|.+...++..
T Consensus 30 ~~~~~~~~m~~~HwH~e~Ei~yv~~G~~~~--~i~g~~~~l~~Gd~ili~s~~~H~~~~~~~~~ 91 (302)
T PRK10371 30 IEFRPPHIMPTSHWHGQVEVNVPFDGDVEY--LINNEKVQINQGHITLFWACTPHQLTDPGNCR 91 (302)
T ss_pred EEeeCCCCCCCCCccccEEEEEecCCcEEE--EECCEEEEEcCCcEEEEecCCcccccccCCCc
Confidence 344556666889999999999999999999 78999999999999999999999987666544
No 42
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.36 E-value=1.5e-06 Score=78.79 Aligned_cols=83 Identities=19% Similarity=0.095 Sum_probs=64.9
Q ss_pred CCceEEEeee-C--CCeEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCC
Q 021698 202 PGGSMKIIRE-S--PTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE 278 (309)
Q Consensus 202 pgg~~~il~~-~--~~~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d 278 (309)
+|.....+.. . ....++++.||+..|.|.|...|+++||+|++.- +...+.+||+++.|++..|+..+.++
T Consensus 113 ~gv~~~~L~~~~~~~~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~d------e~g~y~~Gd~i~~p~~~~H~p~a~~~ 186 (215)
T TIGR02451 113 GRVSRVTLPIDDGNARVRLLYIEAGQSIPQHTHKGFELTLVLHGAFSD------ETGVYGVGDFEEADGSVQHQPRTVSG 186 (215)
T ss_pred CCeEEEeccCCCCCcEEEEEEECCCCccCCCcCCCcEEEEEEEEEEEc------CCCccCCCeEEECCCCCCcCcccCCC
Confidence 4444444443 2 2357899999999999999999998999999542 33457899999999999999999964
Q ss_pred --eEEEEEEcCCcc
Q 021698 279 --TEFFIKWDGRWD 290 (309)
Q Consensus 279 --~~~~i~~~g~~~ 290 (309)
+.++.+.+++..
T Consensus 187 ~~Cicl~v~dapl~ 200 (215)
T TIGR02451 187 GDCLCLAVLDAPLR 200 (215)
T ss_pred CCeEEEEEecCCcc
Confidence 788888888644
No 43
>PRK13501 transcriptional activator RhaR; Provisional
Probab=98.19 E-value=4.5e-06 Score=77.99 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=50.0
Q ss_pred CCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeE
Q 021698 222 AGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE 280 (309)
Q Consensus 222 pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~ 280 (309)
+....++|||+..|++|+++|++++ .++++.+.+++||.++||||.+|.+...++..
T Consensus 27 ~~~~~~~H~H~~~ei~~i~~G~~~~--~i~~~~~~l~~g~~~~I~p~~~H~~~~~~~~~ 83 (290)
T PRK13501 27 PQETFVEHTHQFCEIVIVWRGNGLH--VLNDHPYRITCGDVFYIQAADHHSYESVHDLV 83 (290)
T ss_pred CCCCCccccccceeEEEEecCceEE--EECCeeeeecCCeEEEEcCCCcccccccCCeE
Confidence 3345678999999999999999999 78999999999999999999999987655543
No 44
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.15 E-value=9e-06 Score=75.37 Aligned_cols=52 Identities=33% Similarity=0.490 Sum_probs=46.8
Q ss_pred CCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEc
Q 021698 223 GSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY 276 (309)
Q Consensus 223 G~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~ 276 (309)
+...++|||...|++||++|++++ .++++.+.+++||.++||||+.|.....
T Consensus 33 ~~~~~~H~H~~~ei~~v~~G~~~~--~i~~~~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQHDYYEFTLVLTGRYYQ--EINGKRVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCcccccEEEEEEEeceEEE--EECCEEEEECCCcEEEeCCCCccceeee
Confidence 345589999999999999999999 6899999999999999999999987544
No 45
>PRK13500 transcriptional activator RhaR; Provisional
Probab=98.10 E-value=9e-06 Score=77.17 Aligned_cols=54 Identities=22% Similarity=0.362 Sum_probs=49.1
Q ss_pred CcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCe
Q 021698 224 SVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEET 279 (309)
Q Consensus 224 ~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~ 279 (309)
...++|+|+..|++||++|++.+ .++++.+.+.+||.++|||+.+|.+....+.
T Consensus 59 ~~~~~H~H~~~el~~v~~G~g~~--~v~~~~~~l~~Gdl~~I~~~~~H~~~~~~~~ 112 (312)
T PRK13500 59 DVFAEHTHDFCELVIVWRGNGLH--VLNDRPYRITRGDLFYIHADDKHSYASVNDL 112 (312)
T ss_pred CCCCccccceEEEEEEEcCeEEE--EECCEEEeecCCeEEEECCCCeecccccCCc
Confidence 44689999999999999999999 7899999999999999999999998776653
No 46
>PRK13502 transcriptional activator RhaR; Provisional
Probab=98.06 E-value=1.2e-05 Score=74.72 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=50.0
Q ss_pred cCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCe
Q 021698 221 KAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEET 279 (309)
Q Consensus 221 ~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~ 279 (309)
.|....++|+|+..+++||++|++.+ .++++.+.++|||.++|||+.+|.+...++.
T Consensus 26 ~~~~~~~~H~h~~~~l~~v~~G~~~~--~i~~~~~~l~~g~l~li~~~~~H~~~~~~~~ 82 (282)
T PRK13502 26 YPQDVFAEHTHEFCELVMVWRGNGLH--VLNERPYRITRGDLFYIRAEDKHSYTSVNDL 82 (282)
T ss_pred CCCCCCCccccceEEEEEEecCcEEE--EECCEEEeecCCcEEEECCCCcccccccCCc
Confidence 34455688999999999999999999 7899999999999999999999998765543
No 47
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=98.06 E-value=2.4e-05 Score=70.26 Aligned_cols=69 Identities=19% Similarity=0.310 Sum_probs=54.6
Q ss_pred EEEEEcCCCcCC-ccccCc-cEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEc
Q 021698 216 AIVRFKAGSVEP-AHHHTF-GHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD 286 (309)
Q Consensus 216 ~~v~l~pG~~~p-~H~H~~-~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~ 286 (309)
.++++.|++... ...-+. +-++||++|++++ ..+++++.|.+|+++|+|||.-|.++|.+.+..++.|.
T Consensus 64 yive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv--~~~G~th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~ 134 (264)
T COG3257 64 YIVELHPNGGSQRPEGDEGAETFLFVVSGEITV--KAEGKTHALREGGYAYLPPGSGWTLRNAQKEDSRFHWI 134 (264)
T ss_pred heEEECCCCCCCCCCCCCcceEEEEEEeeeEEE--EEcCeEEEeccCCeEEeCCCCcceEeeccCCceEEEEE
Confidence 467887776543 333344 4567999999999 78999999999999999999999999998666555553
No 48
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.03 E-value=5.4e-05 Score=58.91 Aligned_cols=67 Identities=19% Similarity=0.281 Sum_probs=51.1
Q ss_pred EEEEEcCCCcC-CccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698 216 AIVRFKAGSVE-PAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK 284 (309)
Q Consensus 216 ~~v~l~pG~~~-p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~ 284 (309)
..+.++||+.- +.+.+...-.+||++|.+++ .+.+..+.+.+|++++||+|-.-.++|.++.+..+.
T Consensus 15 G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~V--ti~~~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~Lf 82 (85)
T PF11699_consen 15 GMLELPPGGEKPPKNSRDNTMVFYVIKGKVEV--TIHETSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLF 82 (85)
T ss_dssp EEEEE-TCCCEEEEE--SEEEEEEEEESEEEE--EETTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEE
T ss_pred EEEEeCCCCccCCcccCCcEEEEEEEeCEEEE--EEcCcEEEEeCCCEEEECCCCEEEEEECCCCcEEEE
Confidence 57889998765 56777777778999999999 789999999999999999999999999998877644
No 49
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=98.02 E-value=1.4e-05 Score=74.26 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=49.1
Q ss_pred CCcCCccccC-ccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCe
Q 021698 223 GSVEPAHHHT-FGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEET 279 (309)
Q Consensus 223 G~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~ 279 (309)
+...++|||. ..+++|+++|++.+ .++++.+.+++||.+++||+++|.+....+.
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~--~~~~~~~~l~~g~~~ii~~~~~H~~~~~~~~ 88 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIAL--QLDEHEYSEYAPCFFLTPPSVPHGFVTDLDA 88 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEE--EECCEEEEecCCeEEEeCCCCccccccCCCc
Confidence 4567899998 79999999999999 7899999999999999999999998766543
No 50
>PLN00212 glutelin; Provisional
Probab=97.95 E-value=4.8e-05 Score=76.64 Aligned_cols=67 Identities=13% Similarity=0.099 Sum_probs=57.0
Q ss_pred EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCC----------------------------eEEEecCCcEEEECC
Q 021698 216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG----------------------------ERFDLTVGDYLFTPA 267 (309)
Q Consensus 216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~----------------------------~~~~L~pGd~i~iP~ 267 (309)
..+++.|++...+|.|...+++||++|+..+.+...+ +.+.+++||.+.||+
T Consensus 83 ~R~~i~p~gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPa 162 (493)
T PLN00212 83 IRRVIEPQGLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPA 162 (493)
T ss_pred EEEEecCCcccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccccccccccccccceEeccCCEEEECC
Confidence 5678899999999999999999999999998643321 226999999999999
Q ss_pred CCcEEEEEcCCeEEE
Q 021698 268 GDVHRVKYYEETEFF 282 (309)
Q Consensus 268 g~~H~~~n~~d~~~~ 282 (309)
|++|++.|.++++++
T Consensus 163 G~~hw~yN~Gd~~~v 177 (493)
T PLN00212 163 GVAHWFYNDGDAPVV 177 (493)
T ss_pred CCeEEEEeCCCCcEE
Confidence 999999999987653
No 51
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=97.92 E-value=4.9e-05 Score=70.36 Aligned_cols=74 Identities=28% Similarity=0.422 Sum_probs=46.4
Q ss_pred eEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeE---EEecCCcEEEECCCCcEEEEEcCCeEEEE--EEcCCc
Q 021698 215 SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGER---FDLTVGDYLFTPAGDVHRVKYYEETEFFI--KWDGRW 289 (309)
Q Consensus 215 ~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~---~~L~pGd~i~iP~g~~H~~~n~~d~~~~i--~~~g~~ 289 (309)
..++++++|...|+|+|...+.+|||+|.+.. ++.. .-|++|.+++.|+|..|...+.+++.+.+ +-.+++
T Consensus 38 ~~~vkf~~g~~~pph~H~~~~~~~Vi~G~~~~----~~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~e~g~gp~ 113 (251)
T PF14499_consen 38 GMRVKFPAGFSSPPHIHNADYRGTVISGELHN----GDPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFIEIGEGPY 113 (251)
T ss_dssp EEEEEE-TT-EE--BEESS-EEEEEEESEEEE----TTEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEEE-S---E
T ss_pred eEEEEcCCCccCCCcceeeeEEEEEEEeEEEc----CCCcccceecCCCceEeccCCCceeeeccCccEEEEEEeCCCcc
Confidence 47899999999999999999999999998776 5544 34999999999999999887777664433 444555
Q ss_pred ccc
Q 021698 290 DMF 292 (309)
Q Consensus 290 ~i~ 292 (309)
++.
T Consensus 114 ~v~ 116 (251)
T PF14499_consen 114 DVK 116 (251)
T ss_dssp E--
T ss_pred ccc
Confidence 543
No 52
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.91 E-value=1.4e-05 Score=73.79 Aligned_cols=55 Identities=24% Similarity=0.375 Sum_probs=48.9
Q ss_pred CCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCC
Q 021698 222 AGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE 278 (309)
Q Consensus 222 pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d 278 (309)
+....++|+|+..|++||++|.+++ .++++.+.+++||.+++||+.+|.+....+
T Consensus 24 ~~~~~~~H~H~~~ei~~v~~G~~~~--~i~~~~~~l~~g~~~~i~~~~~h~~~~~~~ 78 (278)
T PRK13503 24 PQAAFPEHHHDFHEIVIVEHGTGIH--VFNGQPYTLSGGTVCFVRDHDRHLYEHTDN 78 (278)
T ss_pred ccccccccccCceeEEEEecCceee--EecCCcccccCCcEEEECCCccchhhhccC
Confidence 3455689999999999999999999 789999999999999999999998866543
No 53
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.83 E-value=5.6e-05 Score=72.78 Aligned_cols=66 Identities=26% Similarity=0.396 Sum_probs=58.7
Q ss_pred EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698 216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~ 282 (309)
.+..++||...+.|+|...-+.||++|+...+ .++++++.+++||++.+|++..|.-.|.++..++
T Consensus 84 ~~q~l~pGe~~~~HRht~sAl~~vveG~G~~t-~V~g~~~~~~~gD~~~tP~w~wH~H~n~~d~~~~ 149 (335)
T TIGR02272 84 GLQLILPGEVAPSHRHTQSALRFIVEGKGAFT-AVDGERTTMHPGDFIITPSWTWHDHGNPGDEPMI 149 (335)
T ss_pred hhEEeCCCCCCCccccccceEEEEEEcCceEE-EECCEEEeeeCCCEEEeCCCeeEecccCCCCcEE
Confidence 35678999999999999999999999998643 5799999999999999999999999999887644
No 54
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.68 E-value=0.00096 Score=56.85 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=46.1
Q ss_pred EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCC--eEEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698 216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG--ERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK 284 (309)
Q Consensus 216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~--~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~ 284 (309)
..+.--|+.....|.-+.+|++|-++|.+.+.+..++ +...+++||.+++|++++|+.+-..++.-+|+
T Consensus 36 VmvVGGPN~R~DyHine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vpHsP~R~~~tiGLVi 106 (151)
T PF06052_consen 36 VMVVGGPNQRTDYHINETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVPHSPQRPADTIGLVI 106 (151)
T ss_dssp EEEEESSB--SSEEE-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--EEEEE-TT-EEEEE
T ss_pred EEEEcCCCCCCccccCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCCCCCcCCCCcEEEEE
Confidence 3455567788899999999999999999998644444 44789999999999999999888777765543
No 55
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=97.65 E-value=9.4e-05 Score=68.46 Aligned_cols=103 Identities=19% Similarity=0.341 Sum_probs=60.2
Q ss_pred eeecCCCCceeec----CCceEEEeeeCCCe-----EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecC
Q 021698 189 LVKNRELNPVEMI----PGGSMKIIRESPTS-----AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTV 259 (309)
Q Consensus 189 l~~~~~~~~~~~~----pgg~~~il~~~~~~-----~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~p 259 (309)
.....+.+++... ++...+.|..++.. .++.+++|.....|+|...+..|||+|++.++..-.++...|.+
T Consensus 138 wld~~dl~W~~~~~~~~~g~~~a~Lwgd~~~g~~~gll~kLPagf~g~i~~h~~~eraVvI~G~~~~~~~~~~~~~~L~~ 217 (251)
T PF14499_consen 138 WLDASDLEWISAPPGPPPGAQIAFLWGDPNTGQYTGLLLKLPAGFTGRIHTHASNERAVVISGELDYQSYGASNFGTLDP 217 (251)
T ss_dssp EEECCCS--EE-SSSTT-SEEEEEEEE-TTS-EE-EEEEE-SSEE--SEEE--S-EEEEEEEEEEEETTEEEETTEEEEE
T ss_pred EeccccCCccccCCCCCCcceEEEEecCCCCCceeeEEEEcCCCCcCceeccCCceEEEEEEeEEEEeecccCCCccccC
Confidence 4455556665544 67788888887652 56778888888999999999999999999983112345588999
Q ss_pred CcEEEECCCCcEEEE-EcCCeEEEEEEcCCccc
Q 021698 260 GDYLFTPAGDVHRVK-YYEETEFFIKWDGRWDM 291 (309)
Q Consensus 260 Gd~i~iP~g~~H~~~-n~~d~~~~i~~~g~~~i 291 (309)
|.+++-|+...|+.. ...++.++|..+|.+++
T Consensus 218 GSYf~s~~~~~H~~~~~e~~~vlyIRtdG~l~~ 250 (251)
T PF14499_consen 218 GSYFGSPGHITHGIFITEDECVLYIRTDGKLSV 250 (251)
T ss_dssp -TT-EE--E------EESS-EEEEEEESS-TTS
T ss_pred CcccccCCcccccccccCCCEEEEEEECCeeec
Confidence 999999999999995 44578888999887653
No 56
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.64 E-value=0.00022 Score=68.75 Aligned_cols=66 Identities=18% Similarity=0.196 Sum_probs=57.5
Q ss_pred EEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698 217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK 284 (309)
Q Consensus 217 ~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~ 284 (309)
...+++|.....|+|.....++|++|+.+. .++++++..++||.+.+|+...|+..|.++..++.+
T Consensus 254 ~q~L~~G~~t~~~r~T~s~Vf~VieG~G~s--~ig~~~~~W~~gD~f~vPsW~~~~h~a~~da~Lf~~ 319 (335)
T TIGR02272 254 IQLLPKGFRTATYRSTDATVFCVVEGRGQV--RIGDAVFRFSPKDVFVVPSWHPVRFEASDDAVLFSF 319 (335)
T ss_pred HhccCCCCCCCCccccccEEEEEEeCeEEE--EECCEEEEecCCCEEEECCCCcEecccCCCeEEEEe
Confidence 356788888999999999999999999999 789999999999999999999998888766555433
No 57
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=97.62 E-value=0.00028 Score=61.03 Aligned_cols=54 Identities=20% Similarity=0.198 Sum_probs=38.9
Q ss_pred cCCccccCccEEEEEEeCEEEEEEEeCCeE---EEecCCcEEEECCCCcEEEEEcCC
Q 021698 225 VEPAHHHTFGHDLVVLEGKKSVWNLTKGER---FDLTVGDYLFTPAGDVHRVKYYEE 278 (309)
Q Consensus 225 ~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~---~~L~pGd~i~iP~g~~H~~~n~~d 278 (309)
....|.|..+|.-|+++|+..+-+...++. ..+.+||.+.+|+|+.|+|.-...
T Consensus 84 f~~EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~ 140 (157)
T PF03079_consen 84 FFEEHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGES 140 (157)
T ss_dssp HCS-EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTT
T ss_pred hheeEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCC
Confidence 345799999999999999999854444444 368999999999999999976553
No 58
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.60 E-value=0.0003 Score=60.41 Aligned_cols=70 Identities=19% Similarity=0.412 Sum_probs=50.7
Q ss_pred EEEEEcCCCcCCcccc-CccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEE-EEEEcCCcc
Q 021698 216 AIVRFKAGSVEPAHHH-TFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF-FIKWDGRWD 290 (309)
Q Consensus 216 ~~v~l~pG~~~p~H~H-~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~-~i~~~g~~~ 290 (309)
..+++... +.-|. ...|.-|||+|++++ .++++++..+|||.+|||+|..=.+...+...+ ++.++..|.
T Consensus 80 Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i--~~~G~~~~A~~GDvi~iPkGs~I~fst~~~a~~~Yv~yPa~W~ 151 (152)
T PF06249_consen 80 GFMELEKT---SFPWTLTYDEIKYVLEGTLEI--SIDGQTVTAKPGDVIFIPKGSTITFSTPDYARFFYVTYPANWQ 151 (152)
T ss_dssp EEEEEEEE---EEEEE-SSEEEEEEEEEEEEE--EETTEEEEEETT-EEEE-TT-EEEEEEEEEEEEEEEEESTT--
T ss_pred EEEEEeCC---CccEEeecceEEEEEEeEEEE--EECCEEEEEcCCcEEEECCCCEEEEecCCCEEEEEEECCCccC
Confidence 67788753 34444 567888999999999 789999999999999999999988877665554 455555563
No 59
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=97.54 E-value=0.00029 Score=59.06 Aligned_cols=67 Identities=24% Similarity=0.288 Sum_probs=37.9
Q ss_pred EcCCCcCCccccCc-cEEEEEEeCEEEEEEEeC--CeEEEecCC-cEEEECCCCcEEEEEcCCeEEEEEEc
Q 021698 220 FKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLTK--GERFDLTVG-DYLFTPAGDVHRVKYYEETEFFIKWD 286 (309)
Q Consensus 220 l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~~--~~~~~L~pG-d~i~iP~g~~H~~~n~~d~~~~i~~~ 286 (309)
.++|....+|.|.. .|+++|++|++++.+..+ .+.+.|... ..++||||++|.+.+.++..++++|.
T Consensus 40 ~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~~~L~Ippg~w~~~~~~s~~svlLv~a 110 (131)
T PF05523_consen 40 VPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREEEEFILDEPNKGLYIPPGVWHGIKNFSEDSVLLVLA 110 (131)
T ss_dssp --SS--EEEEEESS--EEEEEEES-EEEEEE-SS-EEEEEE--TTEEEEE-TT-EEEEE---TT-EEEEEE
T ss_pred CCCCCcccccccccccEEEEEEeCEEEEEEecCCCcEEEEECCCCeEEEECCchhhHhhccCCCcEEEEEc
Confidence 44555578999975 577899999999953222 245666655 59999999999999998544444443
No 60
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=97.50 E-value=0.0021 Score=53.30 Aligned_cols=87 Identities=16% Similarity=0.168 Sum_probs=67.7
Q ss_pred cCCceEEEeee-CCC--e-EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEc
Q 021698 201 IPGGSMKIIRE-SPT--S-AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY 276 (309)
Q Consensus 201 ~pgg~~~il~~-~~~--~-~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~ 276 (309)
..|.+.+++-. +.. | ...++.+|+....|.-..-|-+|+++|+.++....+++.+.++||..+.+.....|.+++.
T Consensus 19 ~~w~SrRlll~~DgmGFS~h~T~i~aGtet~~~YknHlEAvyci~G~Gev~~~~~G~~~~i~pGt~YaLd~hD~H~lra~ 98 (126)
T PF06339_consen 19 ENWESRRLLLKDDGMGFSFHETTIYAGTETHIHYKNHLEAVYCIEGEGEVEDLDTGEVHPIKPGTMYALDKHDRHYLRAK 98 (126)
T ss_pred CCceEEEEEEccCCCCEEEEEEEEeCCCeeEEEecCceEEEEEEeceEEEEEccCCcEEEcCCCeEEecCCCccEEEEec
Confidence 35566665533 332 3 3567899999998888888999999999999644488999999999999999999999998
Q ss_pred CCeEEEEEEcC
Q 021698 277 EETEFFIKWDG 287 (309)
Q Consensus 277 ~d~~~~i~~~g 287 (309)
++-.+..++.+
T Consensus 99 ~dm~~vCVFnP 109 (126)
T PF06339_consen 99 TDMRLVCVFNP 109 (126)
T ss_pred CCEEEEEEcCC
Confidence 86665544443
No 61
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.42 E-value=0.0003 Score=53.04 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=42.3
Q ss_pred EEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcC
Q 021698 217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE 277 (309)
Q Consensus 217 ~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~ 277 (309)
+....||. .+++... .|++|||+|++++. ..+++++.++|||++++|+|..-.+...+
T Consensus 11 ~w~~~pg~-~~~~~~~-~E~~~vleG~v~it-~~~G~~~~~~aGD~~~~p~G~~~~w~v~~ 68 (74)
T PF05899_consen 11 VWECTPGK-FPWPYPE-DEFFYVLEGEVTIT-DEDGETVTFKAGDAFFLPKGWTGTWEVRE 68 (74)
T ss_dssp EEEEECEE-EEEEESS-EEEEEEEEEEEEEE-ETTTEEEEEETTEEEEE-TTEEEEEEEEE
T ss_pred EEEECCce-eEeeCCC-CEEEEEEEeEEEEE-ECCCCEEEEcCCcEEEECCCCEEEEEECe
Confidence 34556654 3333333 88999999999995 33888999999999999999876665443
No 62
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.35 E-value=0.00032 Score=65.99 Aligned_cols=65 Identities=28% Similarity=0.392 Sum_probs=58.3
Q ss_pred EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEE
Q 021698 216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF 281 (309)
Q Consensus 216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~ 281 (309)
.+.-+.||..-|.|+|.+.-+-||++|+..++ .++++...+.+||++..|.+..|.--|.++.++
T Consensus 95 glQlilPGEvApsHrHsqsAlRFvveG~Ga~T-~VdGer~~M~~GDfilTP~w~wHdHgn~g~eP~ 159 (351)
T COG3435 95 GLQLILPGEVAPSHRHNQSALRFVVEGKGAYT-VVDGERTPMEAGDFILTPAWTWHDHGNEGTEPC 159 (351)
T ss_pred hhheecCcccCCcccccccceEEEEeccceeE-eecCceeeccCCCEEEccCceeccCCCCCCCce
Confidence 34567899999999999999999999999887 679999999999999999999999989886665
No 63
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.26 E-value=0.0012 Score=56.43 Aligned_cols=71 Identities=23% Similarity=0.437 Sum_probs=54.9
Q ss_pred EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEE-EEEEcCCcc
Q 021698 216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF-FIKWDGRWD 290 (309)
Q Consensus 216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~-~i~~~g~~~ 290 (309)
.++++.+ +..|| .-...|.-|||+|++.+ .+++++...+|||.+|||.|..-.+...+...+ +++|+..|.
T Consensus 103 G~m~~~~-~tf~w-tl~yDe~d~VlEGrL~V--~~~g~tv~a~aGDvifiPKgssIefst~gea~flyvtyPanWq 174 (176)
T COG4766 103 GLMEMKN-TTFPW-TLNYDEIDYVLEGRLHV--RIDGRTVIAGAGDVIFIPKGSSIEFSTTGEAKFLYVTYPANWQ 174 (176)
T ss_pred ceeeecc-ccCcc-eecccceeEEEeeeEEE--EEcCCeEecCCCcEEEecCCCeEEEeccceEEEEEEEcccccc
Confidence 3556665 44443 34567888999999999 789999999999999999999988877776554 566666664
No 64
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=97.10 E-value=0.0025 Score=56.40 Aligned_cols=66 Identities=21% Similarity=0.322 Sum_probs=39.3
Q ss_pred EEEEcCCCc------CCccccCc-------cEEEEEEeCEEEEEEEeCCe-------EEEecCCcEEEECCCCcEEEEEc
Q 021698 217 IVRFKAGSV------EPAHHHTF-------GHDLVVLEGKKSVWNLTKGE-------RFDLTVGDYLFTPAGDVHRVKYY 276 (309)
Q Consensus 217 ~v~l~pG~~------~p~H~H~~-------~e~vyVl~G~l~v~~~~~~~-------~~~L~pGd~i~iP~g~~H~~~n~ 276 (309)
+..+.||.. ..-|.|+. .|..+|++|+..+..+..+. ...+.|||.++|||+-.|+..|+
T Consensus 54 iTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN~ 133 (182)
T PF06560_consen 54 ITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHRTINT 133 (182)
T ss_dssp EEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEEEEE-
T ss_pred eEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEEEEEC
Confidence 455666532 13488875 47778999988874333332 26789999999999999999999
Q ss_pred CCeEEE
Q 021698 277 EETEFF 282 (309)
Q Consensus 277 ~d~~~~ 282 (309)
+++++.
T Consensus 134 g~~~L~ 139 (182)
T PF06560_consen 134 GDEPLV 139 (182)
T ss_dssp SSS-EE
T ss_pred CCCcEE
Confidence 987764
No 65
>PLN00212 glutelin; Provisional
Probab=97.01 E-value=0.0049 Score=62.36 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=51.2
Q ss_pred EEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEe-C-CeEE--EecCCcEEEECCCCcEEEEEcCCe
Q 021698 216 AIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLT-K-GERF--DLTVGDYLFTPAGDVHRVKYYEET 279 (309)
Q Consensus 216 ~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~-~-~~~~--~L~pGd~i~iP~g~~H~~~n~~d~ 279 (309)
..+.+.+|+..++|||+. .+++||++|++.+++.. . ...+ .|.+||.++||.|.+|..++..+.
T Consensus 351 ~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A~~eg 419 (493)
T PLN00212 351 TRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAEREG 419 (493)
T ss_pred EEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEEEeecCCc
Confidence 567889999999999986 46789999999997432 2 2233 799999999999999987776443
No 66
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=96.95 E-value=0.0036 Score=54.46 Aligned_cols=52 Identities=19% Similarity=0.161 Sum_probs=43.1
Q ss_pred CccccCccEEEEEEeCEEEEEEEeCC-eE--EEecCCcEEEECCCCcEEEEEcCC
Q 021698 227 PAHHHTFGHDLVVLEGKKSVWNLTKG-ER--FDLTVGDYLFTPAGDVHRVKYYEE 278 (309)
Q Consensus 227 p~H~H~~~e~vyVl~G~l~v~~~~~~-~~--~~L~pGd~i~iP~g~~H~~~n~~d 278 (309)
.-|.|...|.-|+++|.+.+.+...+ .. ..+.+||.+.+|||+.|++.-..+
T Consensus 89 ~EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~ 143 (181)
T COG1791 89 QEHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTES 143 (181)
T ss_pred HHhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCC
Confidence 46999999999999999998644444 33 467899999999999999977664
No 67
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.80 E-value=0.0034 Score=59.21 Aligned_cols=64 Identities=28% Similarity=0.375 Sum_probs=55.9
Q ss_pred EEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcC-CeEEE
Q 021698 217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE-ETEFF 282 (309)
Q Consensus 217 ~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~-d~~~~ 282 (309)
...++||-....|+|...-+.-|.+|+... .++++++...+||++.+|+...|+..|.+ |..+|
T Consensus 265 mqlL~~Gf~~~~~r~t~s~iy~V~eGsg~~--~Ig~~rf~~~~~D~fvVPsW~~~~~~~gs~da~LF 329 (351)
T COG3435 265 MQLLPPGFHGKAHRHTDSTIYHVVEGSGYT--IIGGERFDWSAGDIFVVPSWAWHEHVNGSEDAVLF 329 (351)
T ss_pred HHhcCCcccCCceeccCCEEEEEEecceeE--EECCEEeeccCCCEEEccCcceeecccCCcceEEE
Confidence 345788888889999999888899999999 78999999999999999999999999965 44444
No 68
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=96.78 E-value=0.014 Score=52.06 Aligned_cols=99 Identities=23% Similarity=0.202 Sum_probs=74.8
Q ss_pred eeecCCCCceeecCCceEEEeee--CC--CeEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEE
Q 021698 189 LVKNRELNPVEMIPGGSMKIIRE--SP--TSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLF 264 (309)
Q Consensus 189 l~~~~~~~~~~~~pgg~~~il~~--~~--~~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~ 264 (309)
+...-.+.....++|+++.-+.- ++ ...++.+.+|..+|.|+|-.-|.+.|++|...- . .. .+.+||+..
T Consensus 100 l~g~~l~~~~W~~~G~rv~~v~l~~dds~~V~llki~~g~s~P~HtH~G~E~t~vl~G~~sd--e--~G--~y~vgD~~~ 173 (216)
T COG3806 100 LEGALLGPWRWLGPGGRVEPVRLPTDDSRRVALLKIEPGRSFPDHTHVGIERTAVLEGAFSD--E--NG--EYLVGDFTL 173 (216)
T ss_pred hhcccccceeeecCCcceeecccCCCCCceeEEEEeccCcccccccccceEEEEEEeecccc--C--CC--ccccCceee
Confidence 33444556677889998875432 22 246788899999999999999999999998665 2 22 577999999
Q ss_pred ECCCCcEE--EEEcCCeEEEEEEcCCccccc
Q 021698 265 TPAGDVHR--VKYYEETEFFIKWDGRWDMFF 293 (309)
Q Consensus 265 iP~g~~H~--~~n~~d~~~~i~~~g~~~i~~ 293 (309)
-+.++-|+ +...+++.+++.|++.+.++.
T Consensus 174 ~d~~v~H~piv~~~~eClcl~al~~~~~l~g 204 (216)
T COG3806 174 ADGTVQHSPIVLPPGECLCLAALDGPMMLYG 204 (216)
T ss_pred cCCccccccccCCCCCceEEEEcCCCeEEEh
Confidence 99999999 444457888889998876553
No 69
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=96.52 E-value=0.012 Score=53.25 Aligned_cols=65 Identities=28% Similarity=0.346 Sum_probs=57.4
Q ss_pred EEEEEcCCCcCCc-cccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698 216 AIVRFKAGSVEPA-HHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 216 ~~v~l~pG~~~p~-H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~ 282 (309)
.++++.||+.+|. .+|-.++=+|||+|+... ..++..+.+++||++|+-+-.+......+...+.
T Consensus 185 ~ivsFePGa~ip~aEtHvmEHGlyvLeGk~vY--rLn~dwv~V~aGD~mwm~A~cpQacyagG~g~fr 250 (264)
T COG3257 185 HIVSFEPGASIPYAETHVMEHGLYVLEGKGVY--RLNNNWVPVEAGDYIWMGAYCPQACYAGGRGAFR 250 (264)
T ss_pred EEEEecCCcccchhhhhhhhcceEEEecceEE--eecCceEEeecccEEEeeccChhhhccCCCCceE
Confidence 6789999999985 788888889999999998 6789999999999999999999988888766554
No 70
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=96.34 E-value=0.02 Score=46.37 Aligned_cols=55 Identities=31% Similarity=0.289 Sum_probs=44.7
Q ss_pred CCcCCccccCccEEE-EEEeCEEEEEEEeCCeEEEecCCcEEEECCC--CcEEEEEcCC
Q 021698 223 GSVEPAHHHTFGHDL-VVLEGKKSVWNLTKGERFDLTVGDYLFTPAG--DVHRVKYYEE 278 (309)
Q Consensus 223 G~~~p~H~H~~~e~v-yVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g--~~H~~~n~~d 278 (309)
+...++|.|...|.+ ||++|+++-+ ..-+...+|++|+.-|+.+| +.|.-.|.++
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~-Ds~G~~~~l~~G~vq~m~AG~Gi~H~E~~~~~ 96 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR-DSLGNRGVLRAGDVQWMTAGSGIVHSERNASD 96 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE-ETTSEEEEEETTEEEEEE-TTTEEEEEEE-TS
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE-CCCCCeeEeCCCeEEEEeCCCCceEEEecCCC
Confidence 566789999988875 9999999985 45667789999999999876 7899888876
No 71
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=96.33 E-value=0.011 Score=52.28 Aligned_cols=62 Identities=26% Similarity=0.376 Sum_probs=43.3
Q ss_pred EEEEEcCCCcCCccccCcc-----------------------------EEEEEEeCEEEEEEEeCCeEEEecCCcEEEEC
Q 021698 216 AIVRFKAGSVEPAHHHTFG-----------------------------HDLVVLEGKKSVWNLTKGERFDLTVGDYLFTP 266 (309)
Q Consensus 216 ~~v~l~pG~~~p~H~H~~~-----------------------------e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP 266 (309)
.++.+.+|...|.|.|... ...+.+.|..+- ...+....|+||.++.+|
T Consensus 89 KiM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~--~~ag~~lkL~PGesitL~ 166 (225)
T COG3822 89 KIMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQT--HTAGSQLKLSPGESITLP 166 (225)
T ss_pred eeEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEE--eccceeEEECCCCcEecC
Confidence 3567778888888888721 112233443333 334566789999999999
Q ss_pred CCCcEEEEEcCCe
Q 021698 267 AGDVHRVKYYEET 279 (309)
Q Consensus 267 ~g~~H~~~n~~d~ 279 (309)
||+.|+|++.+..
T Consensus 167 Pg~~HsFwae~g~ 179 (225)
T COG3822 167 PGLYHSFWAEEGG 179 (225)
T ss_pred CCceeeeeecCCc
Confidence 9999999997654
No 72
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=96.33 E-value=0.02 Score=48.21 Aligned_cols=84 Identities=26% Similarity=0.327 Sum_probs=55.6
Q ss_pred CCCcCCc-cccCccEE-EEEEeCEEEEEEE-eCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEcC----Ccccccc
Q 021698 222 AGSVEPA-HHHTFGHD-LVVLEGKKSVWNL-TKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDG----RWDMFFD 294 (309)
Q Consensus 222 pG~~~p~-H~H~~~e~-vyVl~G~l~v~~~-~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~g----~~~i~~~ 294 (309)
.|+..+. |.|...++ +.|++|+..+++. -+++...+..||++.||+|+-|.-.. +...|.++-.. .|||--.
T Consensus 51 ~g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~el~v~~GDvlliPAGvGH~rl~-sS~DF~VvGaYp~G~q~diqtg 129 (163)
T COG4297 51 RGGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQELEVGEGDVLLIPAGVGHCRLH-SSADFQVVGAYPPGQQADIQTG 129 (163)
T ss_pred cccccccccccCCcceEEEEecceeEEEecCCCCceeeecCCCEEEEecCccccccc-CCCCeEEEcccCCcccccccCC
Confidence 3555554 56776655 5689999999431 25677999999999999999997533 33455554332 3443332
Q ss_pred --hhHHHHHHHHhh
Q 021698 295 --EDLETAKKAVEK 306 (309)
Q Consensus 295 --~~~~~a~~~~~~ 306 (309)
.|+..|+++|..
T Consensus 130 ~~t~~aear~~I~~ 143 (163)
T COG4297 130 APTDLAEARARIKS 143 (163)
T ss_pred CCccHHHHHHHHHc
Confidence 456888888753
No 73
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=96.18 E-value=0.012 Score=54.74 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=40.4
Q ss_pred cccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCC
Q 021698 229 HHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE 278 (309)
Q Consensus 229 H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d 278 (309)
|.+....+.++++|++.+ .++++.+.+++||.+++||+++|.+....+
T Consensus 45 ~~~~~~~i~~~~~G~~~~--~~~~~~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 45 LGMKGYILNLTIRGQGVI--FNGGRAFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred CCccceEEEEEEeccEEE--ecCCeeEecCCCCEEEECCCCceeeccCCC
Confidence 444455678899999999 789999999999999999999999866543
No 74
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=96.16 E-value=0.0086 Score=51.82 Aligned_cols=54 Identities=22% Similarity=0.170 Sum_probs=42.6
Q ss_pred cCCccccCccEEEEEEeCEEEEEEEe-CCeE--EEecCCcEEEECCCCcEEEEEcCC
Q 021698 225 VEPAHHHTFGHDLVVLEGKKSVWNLT-KGER--FDLTVGDYLFTPAGDVHRVKYYEE 278 (309)
Q Consensus 225 ~~p~H~H~~~e~vyVl~G~l~v~~~~-~~~~--~~L~pGd~i~iP~g~~H~~~n~~d 278 (309)
....|.|..+|+-|+++|+..+-+.. ++++ ..+..||.+++|+|+-|+|....+
T Consensus 85 FfEEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~ 141 (179)
T KOG2107|consen 85 FFEEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPS 141 (179)
T ss_pred HHHHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCch
Confidence 34679999999999999999983221 2332 468999999999999999977654
No 75
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=95.95 E-value=0.06 Score=47.21 Aligned_cols=66 Identities=18% Similarity=0.158 Sum_probs=43.7
Q ss_pred EEEEEcCCCcCCccccCccE-EEEEEeCEEEEEEE--eCC---------eEEEecCCcEEEECCCCcEEEEEcC-CeEE
Q 021698 216 AIVRFKAGSVEPAHHHTFGH-DLVVLEGKKSVWNL--TKG---------ERFDLTVGDYLFTPAGDVHRVKYYE-ETEF 281 (309)
Q Consensus 216 ~~v~l~pG~~~p~H~H~~~e-~vyVl~G~l~v~~~--~~~---------~~~~L~pGd~i~iP~g~~H~~~n~~-d~~~ 281 (309)
.++...||..++.|-|.... ++.|++|+++-+.+ .++ ....+++|..+..+++-.|++.|.+ +...
T Consensus 78 ~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~~~a 156 (175)
T PF05995_consen 78 WLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGDEPA 156 (175)
T ss_dssp EEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SSS-E
T ss_pred EEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCCCCE
Confidence 46788999999999998654 66799999876421 122 2345678888888999999999886 5443
No 76
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=95.94 E-value=0.047 Score=44.91 Aligned_cols=58 Identities=24% Similarity=0.235 Sum_probs=44.2
Q ss_pred EEEEcCCCcCCcccc-CccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCC
Q 021698 217 IVRFKAGSVEPAHHH-TFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE 278 (309)
Q Consensus 217 ~v~l~pG~~~p~H~H-~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d 278 (309)
+..-.||. ++++ +..|+.++|+|+++++ ..+++...+++||++++|+|..=.++-.+.
T Consensus 49 iWe~TpG~---~r~~y~~~E~chil~G~v~~T-~d~Ge~v~~~aGD~~~~~~G~~g~W~V~Et 107 (116)
T COG3450 49 IWECTPGK---FRVTYDEDEFCHILEGRVEVT-PDGGEPVEVRAGDSFVFPAGFKGTWEVLET 107 (116)
T ss_pred EEEecCcc---ceEEcccceEEEEEeeEEEEE-CCCCeEEEEcCCCEEEECCCCeEEEEEeee
Confidence 34444443 3444 3578889999999996 567889999999999999999877766553
No 77
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=95.85 E-value=0.094 Score=40.51 Aligned_cols=55 Identities=25% Similarity=0.343 Sum_probs=39.9
Q ss_pred cccCccEE--EEEEeCEEEEEEEeC-----CeEEEecCCcEEEECCCCcEEEEEcCC-eEEEE
Q 021698 229 HHHTFGHD--LVVLEGKKSVWNLTK-----GERFDLTVGDYLFTPAGDVHRVKYYEE-TEFFI 283 (309)
Q Consensus 229 H~H~~~e~--vyVl~G~l~v~~~~~-----~~~~~L~pGd~i~iP~g~~H~~~n~~d-~~~~i 283 (309)
|.=..+.| +-|++|++.+....+ .+...+.+|+..+|+|..+|++...++ ..++|
T Consensus 19 H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D~~f~l 81 (82)
T PF09313_consen 19 HNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDDLRFQL 81 (82)
T ss_dssp BCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT-EEEE
T ss_pred cCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCCEEEEe
Confidence 43344555 469999999974434 477899999999999999999998885 66653
No 78
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=95.81 E-value=0.069 Score=42.65 Aligned_cols=84 Identities=23% Similarity=0.274 Sum_probs=58.2
Q ss_pred EEEcCCCcCCcc-ccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEc-CCeEEEE----------EE
Q 021698 218 VRFKAGSVEPAH-HHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY-EETEFFI----------KW 285 (309)
Q Consensus 218 v~l~pG~~~p~H-~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~-~d~~~~i----------~~ 285 (309)
++++||+..... ...+.-++||++|++++ +++...+++|+.+++.++..=.+.+. .+..+++ ++
T Consensus 4 i~l~~g~~~~~~~~~~~~~~iyv~~G~~~v----~~~~~~~~~~~~~~l~~g~~i~~~a~~~~a~~lll~GePl~Epi~~ 79 (104)
T PF05726_consen 4 IKLEPGASFTLPLPPGHNAFIYVLEGSVEV----GGEEDPLEAGQLVVLEDGDEIELTAGEEGARFLLLGGEPLNEPIVQ 79 (104)
T ss_dssp EEE-TT-EEEEEEETT-EEEEEEEESEEEE----TTTTEEEETTEEEEE-SECEEEEEESSSSEEEEEEEE----S--EE
T ss_pred EEECCCCEEEeecCCCCEEEEEEEECcEEE----CCCcceECCCcEEEECCCceEEEEECCCCcEEEEEEccCCCCCEEE
Confidence 567777765433 23456788999999887 45557899999999998887788887 5565553 45
Q ss_pred cCCcccccchhHHHHHHHHh
Q 021698 286 DGRWDMFFDEDLETAKKAVE 305 (309)
Q Consensus 286 ~g~~~i~~~~~~~~a~~~~~ 305 (309)
-|+|.+.=.+++.+|.+.-+
T Consensus 80 ~GpFVmnt~eeI~qA~~dy~ 99 (104)
T PF05726_consen 80 YGPFVMNTREEIEQAFEDYQ 99 (104)
T ss_dssp ETTEEESSHHHHHHHHHHHH
T ss_pred ECCcccCCHHHHHHHHHHHH
Confidence 56777777788999987654
No 79
>COG1741 Pirin-related protein [General function prediction only]
Probab=95.46 E-value=0.048 Score=51.36 Aligned_cols=69 Identities=22% Similarity=0.189 Sum_probs=54.6
Q ss_pred EEcCCCcCCccccCccEEE-EEEeCEEEEEEEeCCeEEEecCCcEEEECCC--CcEEEEEc--CC--eEEEEEEcCC
Q 021698 219 RFKAGSVEPAHHHTFGHDL-VVLEGKKSVWNLTKGERFDLTVGDYLFTPAG--DVHRVKYY--EE--TEFFIKWDGR 288 (309)
Q Consensus 219 ~l~pG~~~p~H~H~~~e~v-yVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g--~~H~~~n~--~d--~~~~i~~~g~ 288 (309)
.+.||...++|.|+..|.+ ||++|+++-+ ...+..-.+.|||.-|+-+| +.|+=.|. .+ ...+-+|...
T Consensus 50 ~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr-DS~Gn~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlWv~l 125 (276)
T COG1741 50 VLAPGRGFPPHPHRGLETVTYVLDGEIEHR-DSLGNKGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLWVNL 125 (276)
T ss_pred cccCCCcCCCCCCCCcEEEEEEEccEEEEe-ecCCceeeecccceeEEcCCCceeecccCCccCCCccceeeeecCC
Confidence 4678888999999998875 9999999996 45677789999999999976 78988876 23 3445566554
No 80
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.31 E-value=0.11 Score=49.62 Aligned_cols=58 Identities=22% Similarity=0.193 Sum_probs=39.9
Q ss_pred EcCCC--cCCccccCccEEEEEEeCEEEEEEEe---------------------CCeEEEecCCcEEEECCCCcEEEEEc
Q 021698 220 FKAGS--VEPAHHHTFGHDLVVLEGKKSVWNLT---------------------KGERFDLTVGDYLFTPAGDVHRVKYY 276 (309)
Q Consensus 220 l~pG~--~~p~H~H~~~e~vyVl~G~l~v~~~~---------------------~~~~~~L~pGd~i~iP~g~~H~~~n~ 276 (309)
+.|++ ..++|+=...-+++=++|+-+.++.. ....++|.|||.+|+|+|.+|...+.
T Consensus 120 ~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~ 199 (319)
T PF08007_consen 120 LTPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTT 199 (319)
T ss_dssp EETSSBEESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEES
T ss_pred ecCCCCCCccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCCCCC
Confidence 44544 66889888888888899987765432 12358999999999999999999998
Q ss_pred C
Q 021698 277 E 277 (309)
Q Consensus 277 ~ 277 (309)
+
T Consensus 200 ~ 200 (319)
T PF08007_consen 200 D 200 (319)
T ss_dssp S
T ss_pred C
Confidence 8
No 81
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=94.36 E-value=0.16 Score=47.35 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=38.3
Q ss_pred cEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeE
Q 021698 234 GHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE 280 (309)
Q Consensus 234 ~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~ 280 (309)
..++++++|.+.+ ..+++.+.++|||.+++|++.+|.+...++..
T Consensus 72 ~~l~~~~~G~~~~--~~~g~~~~l~~G~~~l~~~~~p~~~~~~~~~~ 116 (302)
T PRK09685 72 FFTVFQLSGHAII--EQDDRQVQLAAGDITLIDASRPCSIYPQGLSE 116 (302)
T ss_pred EEEEEEecceEEE--EECCeEEEEcCCCEEEEECCCCcEeecCCCce
Confidence 3456789999999 67999999999999999999999987666543
No 82
>PF12852 Cupin_6: Cupin
Probab=94.25 E-value=0.17 Score=44.15 Aligned_cols=43 Identities=28% Similarity=0.380 Sum_probs=35.6
Q ss_pred cEEEEEEeCEEEEEEEeC--CeEEEecCCcEEEECCCCcEEEEEcCC
Q 021698 234 GHDLVVLEGKKSVWNLTK--GERFDLTVGDYLFTPAGDVHRVKYYEE 278 (309)
Q Consensus 234 ~e~vyVl~G~l~v~~~~~--~~~~~L~pGd~i~iP~g~~H~~~n~~d 278 (309)
..+.+|++|+..+ .++ +....|.+||.+++|.|.+|.+....+
T Consensus 36 ~~fh~V~~G~~~l--~~~~~~~~~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 36 ASFHVVLRGSCWL--RVPGGGEPIRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred eEEEEEECCeEEE--EEcCCCCeEEecCCCEEEEcCCCCeEeCCCCC
Confidence 4566899999998 544 478999999999999999999955443
No 83
>PF14272 Gly_rich_SFCGS: Glycine-rich SFCGS
Probab=94.23 E-value=0.1 Score=41.46 Aligned_cols=77 Identities=22% Similarity=0.324 Sum_probs=53.6
Q ss_pred HHHHHHhhcCCCCCCcceEEEEecCc-hhhhhhhcCCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHH
Q 021698 54 AEVGRRVSSSDSSETTTRGLVACGTG-VGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILD 132 (309)
Q Consensus 54 ~~va~~v~~~~~~~~~~~gi~~cgtG-~G~~i~aNK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~ 132 (309)
.++.+...+ ..+|+||-+|||| .|.-++.||+ |--+-.---.-++-.+...+.+|||-||.. =-+|+.+++++
T Consensus 36 mklGdvM~~----e~Ad~GiSFCGSGGAGAitA~tKy-gy~~~~gmRSv~~GvTAi~~G~~VlGFGFm-D~EeLG~rlve 109 (115)
T PF14272_consen 36 MKLGDVMKK----ENADFGISFCGSGGAGAITAQTKY-GYKARHGMRSVDEGVTAINEGKKVLGFGFM-DKEELGRRLVE 109 (115)
T ss_pred chHHHHHHh----hCCCcceEEecCCCccceeecccc-CCchhcCccchhhhHHHHHcCCeEEeeccc-cHHHHHHHHHH
Confidence 456666666 6889999999997 4555666766 433333333345556666789999998854 34677799999
Q ss_pred HHhc
Q 021698 133 TWLK 136 (309)
Q Consensus 133 ~~l~ 136 (309)
+|..
T Consensus 110 ~~~k 113 (115)
T PF14272_consen 110 AYIK 113 (115)
T ss_pred HHHh
Confidence 9975
No 84
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=94.21 E-value=0.18 Score=44.37 Aligned_cols=65 Identities=17% Similarity=0.183 Sum_probs=46.7
Q ss_pred CCCcCCccccCc--cEEEEEEeCEEEEEEEe---CC----e--EEEecCC--cEEEECCCCcEEEEEcCCeEEEEEEc
Q 021698 222 AGSVEPAHHHTF--GHDLVVLEGKKSVWNLT---KG----E--RFDLTVG--DYLFTPAGDVHRVKYYEETEFFIKWD 286 (309)
Q Consensus 222 pG~~~p~H~H~~--~e~vyVl~G~l~v~~~~---~~----~--~~~L~pG--d~i~iP~g~~H~~~n~~d~~~~i~~~ 286 (309)
+|....+|.|.. .+++.|++|++...... +. + ...+.+. ..+|||+|..|.+.+.++...++.+.
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~~ 131 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYKV 131 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEEe
Confidence 777778998865 46788999998874211 22 1 1355544 68999999999999999876555443
No 85
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=93.89 E-value=0.43 Score=42.69 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=19.2
Q ss_pred eEEEecCCcEEEECCCCcEEEEEc
Q 021698 253 ERFDLTVGDYLFTPAGDVHRVKYY 276 (309)
Q Consensus 253 ~~~~L~pGd~i~iP~g~~H~~~n~ 276 (309)
-..+|.|||.+|||+|-.|.+.+.
T Consensus 209 ~~~~l~pGD~LfiP~gWwH~V~~~ 232 (251)
T PF13621_consen 209 YEVVLEPGDVLFIPPGWWHQVENL 232 (251)
T ss_dssp EEEEEETT-EEEE-TT-EEEEEES
T ss_pred eEEEECCCeEEEECCCCeEEEEEc
Confidence 346899999999999999999999
No 86
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=93.75 E-value=0.28 Score=48.86 Aligned_cols=53 Identities=23% Similarity=0.249 Sum_probs=39.5
Q ss_pred cCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEE
Q 021698 231 HTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW 285 (309)
Q Consensus 231 H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~ 285 (309)
...++++|+-+|++++ .++=+...+.|||+++||.|+.+++.-.++...+++-
T Consensus 144 aDGD~Li~~q~G~l~l--~Te~G~L~v~pGd~~VIPRG~~~rv~l~~p~rgyi~E 196 (424)
T PF04209_consen 144 ADGDELIFPQQGSLRL--ETEFGRLDVRPGDYVVIPRGTRFRVELPGPARGYIIE 196 (424)
T ss_dssp SSEEEEEEEEES-EEE--EETTEEEEE-TTEEEEE-TT--EEEE-SSSEEEEEEE
T ss_pred CCCCEEEEEEECCEEE--EecCeeEEEcCCeEEEECCeeEEEEEeCCCceEEEEE
Confidence 3556778999999999 6788889999999999999999999888777766654
No 87
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=93.61 E-value=1.2 Score=37.47 Aligned_cols=128 Identities=16% Similarity=0.097 Sum_probs=74.5
Q ss_pred CCcEEEEEe---CcccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhc
Q 021698 11 HPLKIIAGA---DSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFAN 87 (309)
Q Consensus 11 ~~mkI~ig~---D~~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aN 87 (309)
|+.||++++ |.-...+ ..+.-.|+.+||+|+|+|.+-.++ .+.+.+.+ ...+.-.+-|-.+..+..+
T Consensus 2 ~~~~vl~~~~~gD~H~lG~-~iv~~~lr~~G~eVi~LG~~vp~e---~i~~~a~~----~~~d~V~lS~~~~~~~~~~-- 71 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGN-KILDRALTEAGFEVINLGVMTSQE---EFIDAAIE----TDADAILVSSLYGHGEIDC-- 71 (137)
T ss_pred CCCEEEEEeCCCChhHHHH-HHHHHHHHHCCCEEEECCCCCCHH---HHHHHHHH----cCCCEEEEcCccccCHHHH--
Confidence 456787774 5445555 577788999999999999965433 33333333 2344443434334332222
Q ss_pred CCCceEEEEeCCHHHHHHHHhh--cCcceeeeccc-ccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhHhhhhcc
Q 021698 88 KNPGVFATTCLTPADALNTRSI--NNCNVLAVSGM-STSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMT 164 (309)
Q Consensus 88 K~~giraa~~~~~~~A~~~r~h--NnaNvl~~g~~-~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~l~~s~~ 164 (309)
.....+-|+. .+.. +.+|+. .++.....++.+.+.+--|+.-|+.+- .+++|.+|+.+-.+
T Consensus 72 ------------~~~~~~L~~~~~~~~~-i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~---~~~~i~~~l~~~~~ 135 (137)
T PRK02261 72 ------------RGLREKCIEAGLGDIL-LYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGT---DPEEAIDDLKKDLN 135 (137)
T ss_pred ------------HHHHHHHHhcCCCCCe-EEEECCCCCCccChHHHHHHHHHcCCCEEECcCC---CHHHHHHHHHHHhc
Confidence 1222333343 2333 445554 567777777777777777765555544 34788888877554
No 88
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=93.39 E-value=0.46 Score=41.85 Aligned_cols=65 Identities=22% Similarity=0.224 Sum_probs=46.3
Q ss_pred cCCCcCCcccc---CccEEEEEEeCEEEEEEEeCC--------e--EEEecC--CcEEEECCCCcEEEEEcCCe-EEEEE
Q 021698 221 KAGSVEPAHHH---TFGHDLVVLEGKKSVWNLTKG--------E--RFDLTV--GDYLFTPAGDVHRVKYYEET-EFFIK 284 (309)
Q Consensus 221 ~pG~~~p~H~H---~~~e~vyVl~G~l~v~~~~~~--------~--~~~L~p--Gd~i~iP~g~~H~~~n~~d~-~~~i~ 284 (309)
.+|....+|.| .+..++.|++|++... .+|- + ...|.+ +..+|||+|+.|.+.+.++. .+...
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV-~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y~ 130 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDV-AVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFLYK 130 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEE-EEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEEEe
Confidence 45776788887 3678999999998874 2221 1 356666 55999999999999998864 44433
Q ss_pred Ec
Q 021698 285 WD 286 (309)
Q Consensus 285 ~~ 286 (309)
.+
T Consensus 131 ~~ 132 (176)
T TIGR01221 131 CT 132 (176)
T ss_pred CC
Confidence 33
No 89
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=93.11 E-value=0.82 Score=40.25 Aligned_cols=67 Identities=21% Similarity=0.293 Sum_probs=46.1
Q ss_pred EcCCCcCCccccCc----cEEEEEEeCEEEEEEEeC--------Ce--EEEecCCc--EEEECCCCcEEEEEcCCe-EEE
Q 021698 220 FKAGSVEPAHHHTF----GHDLVVLEGKKSVWNLTK--------GE--RFDLTVGD--YLFTPAGDVHRVKYYEET-EFF 282 (309)
Q Consensus 220 l~pG~~~p~H~H~~----~e~vyVl~G~l~v~~~~~--------~~--~~~L~pGd--~i~iP~g~~H~~~n~~d~-~~~ 282 (309)
-.+|....+|.|.. ..++.|++|++... .+| ++ ...|.++. .+|||+|+.|.+.+.++. .+.
T Consensus 50 s~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV-~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~ 128 (176)
T PF00908_consen 50 SKKGVLRGLHYQSPPYAQAKLVRCLRGEIFDV-AVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVL 128 (176)
T ss_dssp EETTBEEEEEEESTTT-EEEEEEEEESEEEEE-EEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEE
T ss_pred ccccEEEEEEEecCCCCCCcEEEEecCeEEEE-EEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEE
Confidence 34577778887765 47888999998864 233 22 25666665 799999999999999975 444
Q ss_pred EEEcC
Q 021698 283 IKWDG 287 (309)
Q Consensus 283 i~~~g 287 (309)
+..+.
T Consensus 129 Y~~t~ 133 (176)
T PF00908_consen 129 YKVTN 133 (176)
T ss_dssp EEESS
T ss_pred EecCC
Confidence 44443
No 90
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=92.98 E-value=0.17 Score=40.04 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=22.3
Q ss_pred eEEEecCCcEEEECCCCcEEEEEcCCeEE
Q 021698 253 ERFDLTVGDYLFTPAGDVHRVKYYEETEF 281 (309)
Q Consensus 253 ~~~~L~pGd~i~iP~g~~H~~~n~~d~~~ 281 (309)
.+...+|||++++|||..|.+.|.+++..
T Consensus 81 ~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i~ 109 (114)
T PF02373_consen 81 YRFVQKPGEFVFIPPGAYHQVFNLGDNIS 109 (114)
T ss_dssp EEEEEETT-EEEE-TT-EEEEEESSSEEE
T ss_pred ccceECCCCEEEECCCceEEEEeCCceEE
Confidence 45778899999999999999999997643
No 91
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=92.75 E-value=0.98 Score=41.16 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=20.6
Q ss_pred CCeEEEecCCcEEEECCCCcEEEEEcCCe
Q 021698 251 KGERFDLTVGDYLFTPAGDVHRVKYYEET 279 (309)
Q Consensus 251 ~~~~~~L~pGd~i~iP~g~~H~~~n~~d~ 279 (309)
.+....|.||+++.++||..|+|+..+..
T Consensus 152 aG~~l~L~PGESiTL~Pg~yH~Fw~e~g~ 180 (225)
T PF07385_consen 152 AGTQLRLNPGESITLPPGIYHWFWGEGGD 180 (225)
T ss_dssp TT-EEEE-TT-EEEE-TTEEEEEEE-TTS
T ss_pred CCceEEeCCCCeEeeCCCCeeeEEecCCC
Confidence 35567899999999999999999998765
No 92
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=92.59 E-value=0.81 Score=42.80 Aligned_cols=68 Identities=25% Similarity=0.319 Sum_probs=49.6
Q ss_pred EEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCC-eEEEecCC--------cEEEECCCCcEEEEEcCCeEEEEEEc
Q 021698 217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG-ERFDLTVG--------DYLFTPAGDVHRVKYYEETEFFIKWD 286 (309)
Q Consensus 217 ~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~-~~~~L~pG--------d~i~iP~g~~H~~~n~~d~~~~i~~~ 286 (309)
.+++++|.....-....+-.++.|+|++++ ..++ +.+.+..- |++|+|+|..=.+.+.++.++.+...
T Consensus 31 ~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v--~~~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~ae~~~~sa 107 (261)
T PF04962_consen 31 VLRLEAGESLEFELERRELGVVNLGGKATV--TVDGEEFYELGGRESVFDGPPDALYVPRGTKVVIFASTDAEFAVCSA 107 (261)
T ss_dssp CEEEECCHCCCCCCCSEEEEEEEESSSEEE--EETTEEEEEE-TTSSGGGS--EEEEE-TT--EEEEESSTEEEEEEEE
T ss_pred EEEecCCCEEeccCCCcEEEEEEeCCEEEE--EeCCceEEEecccccccCCCCcEEEeCCCCeEEEEEcCCCEEEEEcc
Confidence 468888877665544445556789999999 6677 78888887 99999999999999988888776544
No 93
>PHA00672 hypothetical protein
Probab=92.58 E-value=0.6 Score=38.93 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=63.7
Q ss_pred EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEcCCcccccch
Q 021698 216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDE 295 (309)
Q Consensus 216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~g~~~i~~~~ 295 (309)
..++++.|....--.|..+.+ .+++|.+++ .++++...|..=..+--|+|....+.+..|+... .+|..+
T Consensus 50 Rei~IPkGt~LtG~~hkf~~~-ii~sG~itV--~tdge~~rl~g~~~i~~~aG~KragyAHeDT~wt-------~~h~se 119 (152)
T PHA00672 50 RTIRIPAGVALTGALIKVSTV-LIFSGHATV--FIGGEAVELRGYHVIPASAGRKQAFVAHADTDLT-------MLFPSE 119 (152)
T ss_pred EEEeccCceeeeeeeeEeeEE-EEecccEEE--EeCCcEEEEecceeeecCCCcccceeeeccceEE-------EEeccc
Confidence 467888998887778888888 889999999 8899999998888888899999888888888764 233332
Q ss_pred --hHHHHHHHHhhh
Q 021698 296 --DLETAKKAVEKE 307 (309)
Q Consensus 296 --~~~~a~~~~~~~ 307 (309)
++..|...++.|
T Consensus 120 er~v~~a~a~~~~~ 133 (152)
T PHA00672 120 ARSVAEAEAEFTDE 133 (152)
T ss_pred cccHHHHHhhcccH
Confidence 356666665543
No 94
>TIGR03577 EF_0830 conserved hypothetical protein EF_0830/AHA_3911. Members of this family of small (about 120 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=91.93 E-value=0.39 Score=38.20 Aligned_cols=77 Identities=23% Similarity=0.302 Sum_probs=51.4
Q ss_pred HHHHHHhhcCCCCCCcceEEEEecCch-hhhhhhcCCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHH
Q 021698 54 AEVGRRVSSSDSSETTTRGLVACGTGV-GVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILD 132 (309)
Q Consensus 54 ~~va~~v~~~~~~~~~~~gi~~cgtG~-G~~i~aNK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~ 132 (309)
.++.+-..+ ..+|+||-+||||= |.-++-||+ |-.|-.---.-++-.+.-...+|||-||.. =-+|+.+++++
T Consensus 36 mklGdVM~~----e~Ad~GiSFCGSGGAGAitAqtky-Gyk~~~gmRSveeGvTAi~eG~~VlGFGFm-D~EeLG~rlve 109 (115)
T TIGR03577 36 MKLGDVMKQ----ENADLGISFCGSGGAGAITAQTKY-GYKARYGMRSVEEGVTAINEGKNVLGFGFM-DKEELGKRLTE 109 (115)
T ss_pred chHHHHHhh----hcCccceEEecCCCccceeecccc-CCccccCccchhhhHHHHhcCCeEEeeccc-cHHHHHHHHHH
Confidence 355666655 67899999999974 555566765 544444333334444555578899888754 34667799999
Q ss_pred HHhc
Q 021698 133 TWLK 136 (309)
Q Consensus 133 ~~l~ 136 (309)
+|..
T Consensus 110 a~~k 113 (115)
T TIGR03577 110 AFLK 113 (115)
T ss_pred HHHh
Confidence 9975
No 95
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=91.88 E-value=1.4 Score=41.73 Aligned_cols=49 Identities=27% Similarity=0.259 Sum_probs=37.3
Q ss_pred cCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698 231 HTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 231 H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~ 282 (309)
+....+++|++|++++ ..++....|++|++++||++...... .++..++
T Consensus 251 ~~~~~il~v~~G~~~i--~~~~~~~~l~~G~~~~ipa~~~~~~i-~g~~~~~ 299 (302)
T TIGR00218 251 QQSALILSVLEGSGRI--KSGGKTLPLKKGESFFIPAHLGPFTI-EGECEAI 299 (302)
T ss_pred CCCcEEEEEEcceEEE--EECCEEEEEecccEEEEccCCccEEE-EeeEEEE
Confidence 4456778899999999 56888899999999999998854333 3444444
No 96
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=91.82 E-value=0.79 Score=38.31 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=39.6
Q ss_pred EEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698 235 HDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 235 e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~ 282 (309)
-+.++++|...+ ..+++...+.||+.++++++.++.+...++...+
T Consensus 57 ~l~~~~~G~~~~--~~~g~~~~~~pg~~~l~d~~~~~~~~~~~~~~~~ 102 (172)
T PF14525_consen 57 LLVLPLSGSARI--EQGGREVELAPGDVVLLDPGQPYRLEFSAGCRQL 102 (172)
T ss_pred EEEEEccCCEEE--EECCEEEEEcCCeEEEEcCCCCEEEEECCCccEE
Confidence 345689999999 6799999999999999999999999888765544
No 97
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=91.77 E-value=0.53 Score=40.67 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=43.9
Q ss_pred EEEEEcCCCcCCccccCcc-----EEEEEE-eCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeE
Q 021698 216 AIVRFKAGSVEPAHHHTFG-----HDLVVL-EGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE 280 (309)
Q Consensus 216 ~~v~l~pG~~~p~H~H~~~-----e~vyVl-~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~ 280 (309)
.+.++.||+.+.+|.-... ++.++. .+...+ .++++.+..++|.++++....+|.+.|.++..
T Consensus 83 ~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~--~v~~~~~~w~~G~~~~fD~s~~H~~~N~~~~~ 151 (163)
T PF05118_consen 83 RFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYI--RVGGETRHWREGECWVFDDSFEHEVWNNGDED 151 (163)
T ss_dssp EEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEE--EETTEEEB--CTEEEEE-TTS-EEEEESSSS-
T ss_pred EEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEE--EECCeEEEeccCcEEEEeCCEEEEEEeCCCCC
Confidence 4678899999999987643 333444 355666 67999999999999999999999999998653
No 98
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=91.20 E-value=0.52 Score=42.64 Aligned_cols=62 Identities=16% Similarity=0.116 Sum_probs=48.1
Q ss_pred EEcCCCcCCccccCccEEEEEEeCEEEEEEEe--CCeEEEecCCcEEEECCCCcEEEEEcCCeE
Q 021698 219 RFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLT--KGERFDLTVGDYLFTPAGDVHRVKYYEETE 280 (309)
Q Consensus 219 ~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~--~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~ 280 (309)
.--|+.....|-.+.+|++|-++|.+.+.+.. +-+...++.||.+.+|+.++|+..-..++.
T Consensus 39 VGGPN~RkdyHieegeE~FyQ~KGdMvLKVie~g~~rDivI~qGe~flLParVpHSPqRFantv 102 (279)
T KOG3995|consen 39 VGGPNTRKDYHIEEGEEVFYQLKGDMVLKVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFANTV 102 (279)
T ss_pred ecCCCcccccccCCcchhheeecCceEEeeeccCcceeeEEecCcEEEeccCCCCChhhhccce
Confidence 33566777889999999999999999886322 224578999999999999999865555443
No 99
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=91.01 E-value=0.81 Score=45.54 Aligned_cols=53 Identities=19% Similarity=0.135 Sum_probs=43.9
Q ss_pred ccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698 230 HHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK 284 (309)
Q Consensus 230 ~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~ 284 (309)
-...++++|+-+|.+.+ .++=....+.|||+++||.|+.+++.-.+....+|+
T Consensus 145 NaDGD~Livpq~G~l~i--~TEfG~L~v~pgei~VIPRG~~frv~l~gp~rgyi~ 197 (429)
T TIGR01015 145 NADGDFLIVPQQGALLI--TTEFGRLLVEPNEICVIPRGVRFRVTVLEPARGYIC 197 (429)
T ss_pred ccCCCEEEEEEeCcEEE--EEeccceEecCCCEEEecCccEEEEeeCCCceEEEE
Confidence 44667788999999999 667778899999999999999999987666666554
No 100
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=89.82 E-value=0.4 Score=46.71 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=44.9
Q ss_pred EEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCe----------------------EEEecCCcEEEECCCCcEEEEEc
Q 021698 219 RFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGE----------------------RFDLTVGDYLFTPAGDVHRVKYY 276 (309)
Q Consensus 219 ~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~----------------------~~~L~pGd~i~iP~g~~H~~~n~ 276 (309)
-..+|+....|+-....+++-..|+-+.+ ++.. .+++.|||.+||||+.+|.-...
T Consensus 125 ~a~~GGgvg~H~D~YDVfliQg~G~RRW~--v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae 202 (383)
T COG2850 125 FAAPGGGVGPHFDQYDVFLIQGQGRRRWR--VGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAE 202 (383)
T ss_pred EecCCCccCccccchheeEEeecccceee--cCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCccc
Confidence 34678888999888887777777776663 3322 35788999999999999998776
Q ss_pred CCe
Q 021698 277 EET 279 (309)
Q Consensus 277 ~d~ 279 (309)
.++
T Consensus 203 ~dc 205 (383)
T COG2850 203 DDC 205 (383)
T ss_pred ccc
Confidence 554
No 101
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=89.65 E-value=5.6 Score=33.51 Aligned_cols=113 Identities=12% Similarity=0.075 Sum_probs=65.0
Q ss_pred HHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCCceEEEEeCCHHHHHHH
Q 021698 27 KDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNT 106 (309)
Q Consensus 27 k~~l~~~l~~~g~~v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~giraa~~~~~~~A~~~ 106 (309)
|+.+...|++.||+|+|+|.+--+ .++.+++.+ ..++ .| ..++=+|-.|.. + ....++.
T Consensus 18 k~iv~~~l~~~GfeVi~LG~~v~~---e~~v~aa~~----~~ad-iV-glS~l~~~~~~~--~----------~~~~~~l 76 (134)
T TIGR01501 18 NKILDHAFTNAGFNVVNLGVLSPQ---EEFIKAAIE----TKAD-AI-LVSSLYGHGEID--C----------KGLRQKC 76 (134)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCH---HHHHHHHHH----cCCC-EE-EEecccccCHHH--H----------HHHHHHH
Confidence 688889999999999999996443 334444443 1222 22 112211222211 1 1233444
Q ss_pred HhhcCcce-eeeccc-ccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhHhhhhc
Q 021698 107 RSINNCNV-LAVSGM-STSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSM 163 (309)
Q Consensus 107 r~hNnaNv-l~~g~~-~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~l~~s~ 163 (309)
|+.+-.++ +.+|+. +++++...+..+.+.+.-|+.-|+.+- .+++|.+|+...+
T Consensus 77 ~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt---~~~~iv~~l~~~~ 132 (134)
T TIGR01501 77 DEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGT---PPEVVIADLKKDL 132 (134)
T ss_pred HHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCC---CHHHHHHHHHHHh
Confidence 55443344 446666 578877777666666677766555444 3378888887765
No 102
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=89.26 E-value=0.99 Score=43.98 Aligned_cols=61 Identities=20% Similarity=0.195 Sum_probs=45.8
Q ss_pred EEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeC-CeEEEecCCcEEEECCCCcEEEEEcCCe
Q 021698 217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK-GERFDLTVGDYLFTPAGDVHRVKYYEET 279 (309)
Q Consensus 217 ~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~-~~~~~L~pGd~i~iP~g~~H~~~n~~d~ 279 (309)
..++++|.....-.-+...++.|++|+.++ ..+ +....+.+||.+|||++.+=.+...+|.
T Consensus 337 ~~~v~~g~~~~~~~~~~~SIllv~~G~g~l--~~~t~~~~~v~rG~V~fI~a~~~i~~~~~sd~ 398 (411)
T KOG2757|consen 337 ETKVPTGESYKFPGVDGPSILLVLKGSGIL--KTDTDSKILVNRGDVLFIPANHPIHLSSSSDP 398 (411)
T ss_pred EeecCCCceEEeecCCCceEEEEEecceEE--ecCCCCceeeccCcEEEEcCCCCceeeccCcc
Confidence 345565554444445566788999999999 566 8889999999999999988777665543
No 103
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=88.73 E-value=1.5 Score=43.76 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=42.4
Q ss_pred ccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcC-CeEEEEE
Q 021698 230 HHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE-ETEFFIK 284 (309)
Q Consensus 230 ~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~-d~~~~i~ 284 (309)
-...++++|+-+|++.+ .++=....+.|||+++||.|+.+++.-.+ ....+|+
T Consensus 151 NaDGD~Livpq~G~l~i--~TEfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyi~ 204 (438)
T PRK05341 151 NADGELLIVPQQGRLRL--ATELGVLDVEPGEIAVIPRGVKFRVELPDGPARGYVC 204 (438)
T ss_pred cCCCCEEEEEEeCCEEE--EEeccceEecCCCEEEEcCccEEEEecCCCCeeEEEE
Confidence 34567788999999999 67778899999999999999999997533 5555443
No 104
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=88.64 E-value=0.97 Score=33.02 Aligned_cols=55 Identities=16% Similarity=0.103 Sum_probs=38.0
Q ss_pred EEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEE
Q 021698 218 VRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRV 273 (309)
Q Consensus 218 v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~ 273 (309)
+++.||....++...... +-|.+|.+-++..-+.+.+.|.|||.+.+++|..=.+
T Consensus 2 ~~L~~g~~~~lr~~~~~~-l~v~~G~vWlT~~g~~~D~~L~~G~~l~l~~g~~vvl 56 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQR-LRVESGRVWLTREGDPDDYWLQAGDSLRLRRGGRVVL 56 (63)
T ss_pred EEeCCCceEEeEcCCCcE-EEEccccEEEECCCCCCCEEECCCCEEEeCCCCEEEE
Confidence 456677777666555444 7889998777422234669999999999998865433
No 105
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=88.43 E-value=1.2 Score=41.76 Aligned_cols=62 Identities=18% Similarity=0.218 Sum_probs=43.1
Q ss_pred CCCcCCccccCc--cEEEEEEeCEEEEEEEeCCeE----EEecC-CcEEEECCCCcEEEEEcC-CeEEEE
Q 021698 222 AGSVEPAHHHTF--GHDLVVLEGKKSVWNLTKGER----FDLTV-GDYLFTPAGDVHRVKYYE-ETEFFI 283 (309)
Q Consensus 222 pG~~~p~H~H~~--~e~vyVl~G~l~v~~~~~~~~----~~L~p-Gd~i~iP~g~~H~~~n~~-d~~~~i 283 (309)
|++....|.|.. .+.+.|++|++.+....++.. ..+.| +..-++||+..|++...+ +..+++
T Consensus 20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~d~~~~l 89 (287)
T PRK12335 20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASDDLECQL 89 (287)
T ss_pred hHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCCCcEEEE
Confidence 567778899953 456789999999853322221 34455 456579999999999885 666654
No 106
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=88.42 E-value=1.1 Score=40.22 Aligned_cols=67 Identities=22% Similarity=0.270 Sum_probs=46.0
Q ss_pred EEEEEcCCCcCCccccCccEEE-EEEeCEEEEEEE--eCC---e------E---------EEecCCc-EEEECCC--CcE
Q 021698 216 AIVRFKAGSVEPAHHHTFGHDL-VVLEGKKSVWNL--TKG---E------R---------FDLTVGD-YLFTPAG--DVH 271 (309)
Q Consensus 216 ~~v~l~pG~~~p~H~H~~~e~v-yVl~G~l~v~~~--~~~---~------~---------~~L~pGd-~i~iP~g--~~H 271 (309)
.++.+++|..+|.|-|+....+ -||.|++.++-+ ++. . . ..-.+++ ++..|.. ..|
T Consensus 47 ~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~P~~ggNiH 126 (200)
T PF07847_consen 47 GIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLYPTSGGNIH 126 (200)
T ss_pred EEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEccCCCCeeE
Confidence 6788999999999999998765 599999998521 110 0 0 0222333 5555554 899
Q ss_pred EEEEcC-CeEEE
Q 021698 272 RVKYYE-ETEFF 282 (309)
Q Consensus 272 ~~~n~~-d~~~~ 282 (309)
++.+.+ .+.++
T Consensus 127 ~f~a~~~p~Afl 138 (200)
T PF07847_consen 127 EFTALTGPCAFL 138 (200)
T ss_pred EEEeCCCCeEEE
Confidence 999998 55554
No 107
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=88.18 E-value=5.5 Score=38.25 Aligned_cols=38 Identities=32% Similarity=0.502 Sum_probs=33.5
Q ss_pred cCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCc
Q 021698 231 HTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDV 270 (309)
Q Consensus 231 H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~ 270 (309)
+..-.+++|++|++++ ..+++++.|++|++++||+...
T Consensus 258 ~~~~~il~v~eG~~~l--~~~~~~~~l~~G~s~~ipa~~~ 295 (312)
T COG1482 258 QESFSILLVLEGEGTL--IGGGQTLKLKKGESFFIPANDG 295 (312)
T ss_pred CCCcEEEEEEcCeEEE--ecCCEEEEEcCCcEEEEEcCCC
Confidence 3477889999999999 6789999999999999999844
No 108
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=87.95 E-value=2 Score=42.50 Aligned_cols=47 Identities=15% Similarity=0.180 Sum_probs=36.1
Q ss_pred ccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698 233 FGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 233 ~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~ 282 (309)
...+++|++|++++ ..+++.+.|++|+++|+|++...... .++..++
T Consensus 339 ~~~Illv~~G~~~i--~~~~~~~~l~~G~~~fipa~~~~~~~-~g~~~~~ 385 (389)
T PRK15131 339 SAAILFCVEGEAVL--WKGEQQLTLKPGESAFIAANESPVTV-SGHGRLA 385 (389)
T ss_pred CcEEEEEEcceEEE--EeCCeEEEECCCCEEEEeCCCccEEE-ecccEEE
Confidence 45778899999999 56888899999999999998765443 2443333
No 109
>PLN02658 homogentisate 1,2-dioxygenase
Probab=87.33 E-value=2.1 Score=42.78 Aligned_cols=53 Identities=13% Similarity=0.158 Sum_probs=42.4
Q ss_pred ccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEc-CCeEEEEE
Q 021698 230 HHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY-EETEFFIK 284 (309)
Q Consensus 230 ~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~-~d~~~~i~ 284 (309)
-+..++++|+-+|.+.+ .++=....+.|||+++||.|+.+++.-. +....+|+
T Consensus 144 NaDGD~Livpq~G~l~i--~TEfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~ 197 (435)
T PLN02658 144 NADGDFLIVPQQGRLWI--KTELGKLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVL 197 (435)
T ss_pred cCCCCEEEEEEeCCEEE--EEeccceEecCCCEEEecCccEEEEecCCCCeeEEEE
Confidence 44567778999999999 6677788999999999999999999754 35555443
No 110
>PLN02288 mannose-6-phosphate isomerase
Probab=86.93 E-value=1.6 Score=43.31 Aligned_cols=52 Identities=21% Similarity=0.220 Sum_probs=36.5
Q ss_pred EEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeE--EEecCCcEEEECCCCc
Q 021698 217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGER--FDLTVGDYLFTPAGDV 270 (309)
Q Consensus 217 ~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~--~~L~pGd~i~iP~g~~ 270 (309)
.+++.+|.......+....+++|++|++++ ..+++. ..|++|+++|+|++..
T Consensus 338 ~~~l~~~~~~~~~~~~gp~Illv~~G~~~i--~~~~~~~~~~l~~G~~~fv~a~~~ 391 (394)
T PLN02288 338 HCDVPPGASVVFPAVPGPSVFLVIEGEGVL--STGSSEDGTAAKRGDVFFVPAGTE 391 (394)
T ss_pred EEEeCCCCeEeecCCCCCEEEEEEcCEEEE--ecCCccceEEEeceeEEEEeCCCc
Confidence 345555543222225566889999999999 445554 6799999999998753
No 111
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=86.86 E-value=0.31 Score=37.19 Aligned_cols=20 Identities=40% Similarity=0.846 Sum_probs=16.9
Q ss_pred eEEEEecCchhhhhhh-cCCC
Q 021698 71 RGLVACGTGVGVAIFA-NKNP 90 (309)
Q Consensus 71 ~gi~~cgtG~G~~i~a-NK~~ 90 (309)
+-+++||+|+|.|+.+ +|++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~ 21 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIK 21 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHH
T ss_pred CEEEECCChHHHHHHHHHHHH
Confidence 4689999999999999 7653
No 112
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=85.22 E-value=0.29 Score=38.58 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=17.1
Q ss_pred EEEEecCchhhhhhhcCCC
Q 021698 72 GLVACGTGVGVAIFANKNP 90 (309)
Q Consensus 72 gi~~cgtG~G~~i~aNK~~ 90 (309)
-+++||+|++.|++++|++
T Consensus 2 Il~~Cg~G~sTS~~~~ki~ 20 (96)
T cd05564 2 ILLVCSAGMSTSILVKKMK 20 (96)
T ss_pred EEEEcCCCchHHHHHHHHH
Confidence 4789999999999999884
No 113
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=83.38 E-value=0.47 Score=37.46 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.1
Q ss_pred ceEEEEecCchhhhhhhcCCCc
Q 021698 70 TRGLVACGTGVGVAIFANKNPG 91 (309)
Q Consensus 70 ~~gi~~cgtG~G~~i~aNK~~g 91 (309)
-+-+++||+|++.|+.+||.+-
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~ 25 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNK 25 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHH
Confidence 3678999999999999999853
No 114
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=83.26 E-value=6.7 Score=31.11 Aligned_cols=61 Identities=21% Similarity=0.218 Sum_probs=38.7
Q ss_pred EEcCCCcCCccccC-ccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698 219 RFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 219 ~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~ 282 (309)
.+.||.. +... ..|..-|++|++++++--.+++....+|+++-+|++..-.++....+..+
T Consensus 29 Vm~pGeY---~F~T~~~E~M~vvsG~l~V~lpg~~ew~~~~aGesF~VpanssF~v~v~~~~~Y~ 90 (94)
T PF06865_consen 29 VMLPGEY---TFGTSAPERMEVVSGELEVKLPGEDEWQTYSAGESFEVPANSSFDVKVKEPTAYL 90 (94)
T ss_dssp EE-SECE---EEEESS-EEEEEEESEEEEEETT-SS-EEEETT-EEEE-TTEEEEEEESS-EEEE
T ss_pred EEeeeEE---EEcCCCCEEEEEEEeEEEEEcCCCcccEEeCCCCeEEECCCCeEEEEECcceeeE
Confidence 4556552 2222 35778899999999522223467899999999999999888887766543
No 115
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=83.08 E-value=1 Score=34.69 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=18.1
Q ss_pred HHHHHHHHhCCCcEEEecCCC
Q 021698 28 DALVSHLRSLNIDVEDLGTSD 48 (309)
Q Consensus 28 ~~l~~~l~~~g~~v~d~g~~~ 48 (309)
..++++|+++||+|++++..+
T Consensus 11 s~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 11 SNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred hHHHHHHHHCCCEEEecCCcc
Confidence 468999999999999998643
No 116
>PRK10579 hypothetical protein; Provisional
Probab=83.02 E-value=7.8 Score=30.72 Aligned_cols=49 Identities=14% Similarity=0.219 Sum_probs=37.5
Q ss_pred cEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698 234 GHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 234 ~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~ 282 (309)
.|..-|++|++++.+--.+++....+|+.+.+|++..-.++....+..+
T Consensus 42 ~E~MeivsG~l~V~Lpg~~ew~~~~aG~sF~VpanssF~l~v~~~t~Y~ 90 (94)
T PRK10579 42 PEEMTVISGALNVLLPGATDWQVYEAGEVFNVPGHSEFHLQVAEPTSYL 90 (94)
T ss_pred cEEEEEEeeEEEEECCCCcccEEeCCCCEEEECCCCeEEEEECcceeeE
Confidence 4777899999999422223557999999999999998888777655443
No 117
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=82.24 E-value=0.64 Score=37.42 Aligned_cols=20 Identities=25% Similarity=0.699 Sum_probs=17.9
Q ss_pred eEEEEecCchhhhhhhcCCC
Q 021698 71 RGLVACGTGVGVAIFANKNP 90 (309)
Q Consensus 71 ~gi~~cgtG~G~~i~aNK~~ 90 (309)
+-+++||+|++.||++||.+
T Consensus 3 kILlvCg~G~STSlla~k~k 22 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTT 22 (104)
T ss_pred EEEEECCCchHHHHHHHHHH
Confidence 46899999999999999874
No 118
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=82.13 E-value=6.9 Score=36.97 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=39.7
Q ss_pred ccEE-EEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEc----CCeEEEEEEcC
Q 021698 233 FGHD-LVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY----EETEFFIKWDG 287 (309)
Q Consensus 233 ~~e~-vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~----~d~~~~i~~~g 287 (309)
..|. ++.|.|++++ .++++++.+.+.|++|+|.|..-..... ++.++.+....
T Consensus 73 rrE~giV~lgG~~~V--~vdG~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~sAP 130 (276)
T PRK00924 73 RRELGIINIGGAGTV--TVDGETYELGHRDALYVGKGAKEVVFASADAANPAKFYLNSAP 130 (276)
T ss_pred CcEEEEEEccceEEE--EECCEEEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEEccc
Confidence 3454 5679999999 6899999999999999999988555432 24566655543
No 119
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=81.68 E-value=0.6 Score=34.96 Aligned_cols=20 Identities=30% Similarity=0.740 Sum_probs=16.9
Q ss_pred eEEEEecCchhhh-hhhcCCC
Q 021698 71 RGLVACGTGVGVA-IFANKNP 90 (309)
Q Consensus 71 ~gi~~cgtG~G~~-i~aNK~~ 90 (309)
+.+++|++|.|.+ |.+||+.
T Consensus 2 kilivC~~G~~~s~~l~~~l~ 22 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLK 22 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHH
Confidence 5789999999999 8887754
No 120
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=81.64 E-value=6.4 Score=38.43 Aligned_cols=46 Identities=17% Similarity=0.207 Sum_probs=38.8
Q ss_pred CccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCe
Q 021698 232 TFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEET 279 (309)
Q Consensus 232 ~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~ 279 (309)
..++++|+-+|++++ .++=....++|||+..||.|+.-++.-....
T Consensus 145 Dge~Livpq~G~l~l--~te~G~l~v~pgeiavIPRG~~frve~~~~~ 190 (427)
T COG3508 145 DGELLIVPQQGELRL--KTELGVLEVEPGEIAVIPRGTTFRVELKDGE 190 (427)
T ss_pred CCCEEEEeecceEEE--EEeeceEEecCCcEEEeeCCceEEEEecCCc
Confidence 356677899999999 6777889999999999999999998776544
No 121
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=81.55 E-value=4.5 Score=33.53 Aligned_cols=96 Identities=22% Similarity=0.330 Sum_probs=56.0
Q ss_pred CCcEEEEEeC--cccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcC
Q 021698 11 HPLKIIAGAD--SFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANK 88 (309)
Q Consensus 11 ~~mkI~ig~D--~~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK 88 (309)
+.-+|+||.| +.+-.+++.+.+-|...|.+|.|+|.-.-|.+...+.+. .++-||.|- |..
T Consensus 39 ~~~~VvVg~D~R~~s~~~~~~~~~~l~~~G~~V~~~g~~~tP~~~~~~~~~--------~~~ggi~iT---------aSh 101 (137)
T PF02878_consen 39 NGSRVVVGRDTRPSSPMLAKALAAGLRANGVDVIDIGLVPTPALSFAIRQL--------NADGGIMIT---------ASH 101 (137)
T ss_dssp TSSEEEEEE-SSTTHHHHHHHHHHHHHHTTEEEEEEEEB-HHHHHHHHHHH--------TESEEEEE-----------TT
T ss_pred CCCeEEEEEcccCCHHHHHHHHHHHHhhcccccccccccCcHHhhhhcccc--------ccceeeEEE---------ecC
Confidence 3458999999 777899999999999999999999954444444444332 234455543 322
Q ss_pred CCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCC
Q 021698 89 NPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPF 139 (309)
Q Consensus 89 ~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f 139 (309)
.|+=+ |+--+..=.+..+.++.-++|.+.+...+|
T Consensus 102 np~~~----------------ngik~~~~~G~~~~~~~~~~I~~~~~~~~~ 136 (137)
T PF02878_consen 102 NPPGY----------------NGIKFFDANGGPISPEEERKIEQIIEREEF 136 (137)
T ss_dssp S-TTE----------------EEEEEEETTSSB--HHHHHHHHHHHHHT-E
T ss_pred CCCCc----------------ceEEEEeCCCCcCCHHHHHHHHHHHHhhhc
Confidence 22222 221122222446777777777777765544
No 122
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=81.48 E-value=0.91 Score=35.67 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=28.6
Q ss_pred eEEEEecCchhhhhh-hcCCCc------eEEEEeC-CHHHHHHHHhhcCcceeeeccc
Q 021698 71 RGLVACGTGVGVAIF-ANKNPG------VFATTCL-TPADALNTRSINNCNVLAVSGM 120 (309)
Q Consensus 71 ~gi~~cgtG~G~~i~-aNK~~g------iraa~~~-~~~~A~~~r~hNnaNvl~~g~~ 120 (309)
+-+++||+|+|.|+. ++|++- |-+-+.+ +..+. ....+|..++..+..
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e~--~~~~~~~D~iv~t~~ 59 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEI--ETYMDGVHLICTTAR 59 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHHH--hhhcCCCCEEEECCc
Confidence 578999999999988 577554 3333332 22222 222356667766554
No 123
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=81.48 E-value=15 Score=30.66 Aligned_cols=60 Identities=12% Similarity=0.100 Sum_probs=37.8
Q ss_pred CcEEEEEeCc-ccHHH-HHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCcceEEEEecCc
Q 021698 12 PLKIIAGADS-FGAEL-KDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTG 79 (309)
Q Consensus 12 ~mkI~ig~D~-~g~~l-k~~l~~~l~~~g~~v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG 79 (309)
+.||++|.=- -+.+. |+.+...|+..||+|+|+|.+.-++ .+++++.+ +....|.+|++=
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e---~~v~aa~e-----~~adii~iSsl~ 63 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPE---EIARQAVE-----ADVHVVGVSSLA 63 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHH---HHHHHHHH-----cCCCEEEEcCch
Confidence 3466665311 12333 7888899999999999999964443 34444443 234677888764
No 124
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=81.25 E-value=0.59 Score=35.73 Aligned_cols=20 Identities=50% Similarity=0.785 Sum_probs=16.6
Q ss_pred eEEEEecCchhhh-hhhcCCC
Q 021698 71 RGLVACGTGVGVA-IFANKNP 90 (309)
Q Consensus 71 ~gi~~cgtG~G~~-i~aNK~~ 90 (309)
+.+++|++|+|.| |.+.|++
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~ 22 (89)
T cd05566 2 KILVACGTGVATSTVVASKVK 22 (89)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 5789999999999 7776654
No 125
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=80.71 E-value=0.88 Score=43.18 Aligned_cols=21 Identities=33% Similarity=0.805 Sum_probs=18.5
Q ss_pred eEEEecCCcEEEECCCCcEEE
Q 021698 253 ERFDLTVGDYLFTPAGDVHRV 273 (309)
Q Consensus 253 ~~~~L~pGd~i~iP~g~~H~~ 273 (309)
....++|||++|||+|++|..
T Consensus 151 n~v~v~~Gd~i~ipaGt~HA~ 171 (302)
T TIGR00218 151 NRIKLKPGDFFYVPSGTPHAY 171 (302)
T ss_pred cccccCCCCEEEeCCCCcccc
Confidence 347899999999999999983
No 126
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=80.66 E-value=17 Score=30.90 Aligned_cols=42 Identities=21% Similarity=0.247 Sum_probs=35.9
Q ss_pred CccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEE
Q 021698 232 TFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKY 275 (309)
Q Consensus 232 ~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n 275 (309)
-.--+.+|++|+-++ .++++.+...+|+++..+.+.|=....
T Consensus 22 y~p~i~~vlQG~K~~--~~g~~~~~Y~~g~~lv~~~~lPv~~~v 63 (155)
T PF06719_consen 22 YEPSICIVLQGSKRV--HLGDQVFEYDAGQYLVSSVDLPVESEV 63 (155)
T ss_pred cCCeEEEEEeeeEEE--EECCceEEecCCcEEEecCCCcEEEEE
Confidence 334567899999999 789999999999999999999976554
No 127
>PRK03094 hypothetical protein; Provisional
Probab=80.64 E-value=1.2 Score=34.19 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=16.6
Q ss_pred HHHHHHHHhCCCcEEEecC
Q 021698 28 DALVSHLRSLNIDVEDLGT 46 (309)
Q Consensus 28 ~~l~~~l~~~g~~v~d~g~ 46 (309)
..|+++|+++||+|+|+-.
T Consensus 11 s~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 11 TDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred HHHHHHHHHCCCEEEecCc
Confidence 4589999999999999865
No 128
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=79.64 E-value=0.94 Score=36.48 Aligned_cols=20 Identities=15% Similarity=0.396 Sum_probs=17.6
Q ss_pred eEEEEecCchhhhhhhcCCC
Q 021698 71 RGLVACGTGVGVAIFANKNP 90 (309)
Q Consensus 71 ~gi~~cgtG~G~~i~aNK~~ 90 (309)
+-+++|++|+|.||.+||..
T Consensus 5 kIllvC~~G~sTSll~~km~ 24 (106)
T PRK10499 5 HIYLFCSAGMSTSLLVSKMR 24 (106)
T ss_pred EEEEECCCCccHHHHHHHHH
Confidence 67899999999999997763
No 129
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=79.17 E-value=4.3 Score=33.04 Aligned_cols=103 Identities=11% Similarity=0.037 Sum_probs=55.3
Q ss_pred HHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCCceEEEEeCCHHHHHHHH
Q 021698 28 DALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTR 107 (309)
Q Consensus 28 ~~l~~~l~~~g~~v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~giraa~~~~~~~A~~~r 107 (309)
+.+..+|+..||+|+++|.+..++ .+.+.+.+ .....|.+|++= +-.+ ... ...++..|
T Consensus 17 ~~~~~~l~~~G~~vi~lG~~vp~e---~~~~~a~~-----~~~d~V~iS~~~-~~~~--~~~----------~~~~~~L~ 75 (122)
T cd02071 17 KVIARALRDAGFEVIYTGLRQTPE---EIVEAAIQ-----EDVDVIGLSSLS-GGHM--TLF----------PEVIELLR 75 (122)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHH---HHHHHHHH-----cCCCEEEEcccc-hhhH--HHH----------HHHHHHHH
Confidence 667778999999999999975444 33444443 234577778762 1110 000 23333344
Q ss_pred hh-cCcce-eeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhHhh
Q 021698 108 SI-NNCNV-LAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFD 160 (309)
Q Consensus 108 ~h-NnaNv-l~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~l~ 160 (309)
+- ++ ++ +.+|++.. .+..+.|...-|+.-+..+... +++..|++
T Consensus 76 ~~~~~-~i~i~~GG~~~-----~~~~~~~~~~G~d~~~~~~~~~---~~~~~~~~ 121 (122)
T cd02071 76 ELGAG-DILVVGGGIIP-----PEDYELLKEMGVAEIFGPGTSI---EEIIDKIR 121 (122)
T ss_pred hcCCC-CCEEEEECCCC-----HHHHHHHHHCCCCEEECCCCCH---HHHHHHHh
Confidence 43 33 43 45666532 3334666666665433333332 55666654
No 130
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=79.10 E-value=15 Score=33.99 Aligned_cols=70 Identities=23% Similarity=0.333 Sum_probs=53.0
Q ss_pred EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeE----------EEecCCcEEEECCCCcEEEEEcCCeEEEEEE
Q 021698 216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGER----------FDLTVGDYLFTPAGDVHRVKYYEETEFFIKW 285 (309)
Q Consensus 216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~----------~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~ 285 (309)
.+.++.+|.....-.-..+-.+++++|++++ ...++. +.=+|=|++|+|.|..-++.+.++.++-+..
T Consensus 32 ~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~v--s~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~t~~~vAvC~ 109 (270)
T COG3718 32 RLLRLAAGESATEETGDRERCLVLVTGKATV--SAHGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVTATTDLEVAVCS 109 (270)
T ss_pred EEEEccCCCcccccCCCceEEEEEEeeeEEE--eeccchHhhcccccccccCCCCCeEEecCCceEEEEeecceEEEEEe
Confidence 4678889988776666667778899999999 444433 2334679999999999999999988776655
Q ss_pred cC
Q 021698 286 DG 287 (309)
Q Consensus 286 ~g 287 (309)
..
T Consensus 110 AP 111 (270)
T COG3718 110 AP 111 (270)
T ss_pred CC
Confidence 43
No 131
>COG0127 Xanthosine triphosphate pyrophosphatase [Nucleotide transport and metabolism]
Probab=79.05 E-value=2.5 Score=37.88 Aligned_cols=81 Identities=22% Similarity=0.246 Sum_probs=56.4
Q ss_pred CcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----------CCcchhHHHHHHhhcCCCCCCcceEEEEecCch
Q 021698 12 PLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----------DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGV 80 (309)
Q Consensus 12 ~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-----------~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~ 80 (309)
.|||++++-..|= -.+++..|...|++|+.+... ++.+-|..-++.++. ....-++..-||+
T Consensus 1 ~~ki~~AT~N~~K--~~E~~~il~~~~~ei~~~~~~~~~~e~eEtg~tf~enA~~Ka~~~a~-----~~g~pviaDDSGL 73 (194)
T COG0127 1 MMKIVLATGNKGK--LRELKSILAPGGIEIESLKELGVEIEVEETGLTFEENALLKARAAAK-----ATGLPVIADDSGL 73 (194)
T ss_pred CcEEEEEcCChHH--HHHHHHHhcccCceEEEccccCCCCCccchhhHHHHHHHHHHHHHHh-----hcCCcEEEecCce
Confidence 3689999877552 357788888877999876542 133344444555543 2456788999998
Q ss_pred hhhhhhcCCCceEEEEeCCH
Q 021698 81 GVAIFANKNPGVFATTCLTP 100 (309)
Q Consensus 81 G~~i~aNK~~giraa~~~~~ 100 (309)
-+. +.|-+|||+.|.....
T Consensus 74 ~v~-aL~G~PGvYSar~~~~ 92 (194)
T COG0127 74 CVD-ALNGFPGVYSARFAGE 92 (194)
T ss_pred EEe-ccCCCCcceeehhccc
Confidence 776 7899999999877654
No 132
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=78.90 E-value=0.79 Score=35.18 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=15.6
Q ss_pred eEEEEecCchhhhhh-hcCC
Q 021698 71 RGLVACGTGVGVAIF-ANKN 89 (309)
Q Consensus 71 ~gi~~cgtG~G~~i~-aNK~ 89 (309)
+-+++||+|+|.|+. +.|+
T Consensus 2 kilvvCg~G~gtS~ml~~ki 21 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVL 21 (87)
T ss_pred EEEEECCCCccHHHHHHHHH
Confidence 578999999999887 5554
No 133
>PRK09375 quinolinate synthetase; Provisional
Probab=78.84 E-value=15 Score=35.40 Aligned_cols=114 Identities=14% Similarity=0.160 Sum_probs=78.1
Q ss_pred CCCcc--cCCCCCCcEEEEEeCcccHHH-----HHHHHHHHHhC-CCcEEEecCCCCcchhHHHHHHhhcCCCCCCcceE
Q 021698 1 MAENA--DAAAPHPLKIIAGADSFGAEL-----KDALVSHLRSL-NIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRG 72 (309)
Q Consensus 1 ~~~~~--~~~~~~~mkI~ig~D~~g~~l-----k~~l~~~l~~~-g~~v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~g 72 (309)
|||.+ .+ ++| +|++-.-+||..| .+.|++..+++ +.-|+= |.-...+| +++++
T Consensus 79 MaEtAkIL~-p~k--~VllP~~~AgC~mAd~~~~~~i~~lk~~~p~a~vVa-----YvNssaeV-KA~aD---------- 139 (319)
T PRK09375 79 MAETAKILS-PEK--TVLLPDLEAGCSLADMCPAEEFRAFKEAHPDATVVT-----YVNTSAAV-KARAD---------- 139 (319)
T ss_pred hhhhHHhcC-CCC--eEECCCCCCCCcccccCCHHHHHHHHHHCCCCEEEE-----EeCCCHHH-HHhCC----------
Confidence 77775 23 344 6777777799987 56777777777 555552 43333333 44442
Q ss_pred EEEecCchhhhhhhcCCCceEEEEeCCHHHHHHHHhhcCcceeeeccc-----ccCHHHHHHHHHHH
Q 021698 73 LVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGM-----STSKESAVEILDTW 134 (309)
Q Consensus 73 i~~cgtG~G~~i~aNK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~-----~~~~~~a~~i~~~~ 134 (309)
++|+|+.-.++.++.-++=.=-.|-|.+-|+.+....+.+||.-.|. -+.++...+.-+.+
T Consensus 140 -~~cTSSnAl~iv~~~~~~~~IlF~PD~~Lg~~v~~l~~k~vilw~G~C~vH~~~~~e~i~~~r~~~ 205 (319)
T PRK09375 140 -IVCTSSNAVKIVEALPQGKKILFLPDQHLGRYVAKQTGADIILWPGHCIVHEEFTAEDLERLRAEY 205 (319)
T ss_pred -eEEeCHHHHHHHhccCCCCeEEEeCchHHHHHHHHcCCCEEEccCCcchhccCcCHHHHHHHHHHC
Confidence 67999999999997767888899999999999999888888875544 23444444444444
No 134
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=78.58 E-value=3.1 Score=35.91 Aligned_cols=107 Identities=20% Similarity=0.246 Sum_probs=61.4
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhh---------hhhcCCCce----E
Q 021698 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVA---------IFANKNPGV----F 93 (309)
Q Consensus 29 ~l~~~l~~~g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~---------i~aNK~~gi----r 93 (309)
.|.+.|++.|+++.+++. +|...+...+.+.+.. ..+|.-|+-.|||.|-. ++-=++||+ +
T Consensus 26 ~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~----~~~DlVIttGGtg~g~~D~t~eal~~l~~~~l~G~~~~~~ 101 (163)
T TIGR02667 26 YLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIAD----PDVQVILITGGTGFTGRDVTPEALEPLFDKTVEGFGELFR 101 (163)
T ss_pred HHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhc----CCCCEEEECCCcCCCCCCCcHHHHHHHHCCcCCcHHHHHH
Confidence 566778899999999885 5677777777776543 46788888888887631 111112232 0
Q ss_pred EEEeCC-HHHHHH----HHhhcCcceeeecccccCHHHHH-HHHHHHhcCCC
Q 021698 94 ATTCLT-PADALN----TRSINNCNVLAVSGMSTSKESAV-EILDTWLKTPF 139 (309)
Q Consensus 94 aa~~~~-~~~A~~----~r~hNnaNvl~~g~~~~~~~~a~-~i~~~~l~~~f 139 (309)
..-... -..+.+ +-..++.=|++|++.-.+...+. .++.-+|..-|
T Consensus 102 ~i~~~p~G~~~~lsr~~~g~~~~~~v~~LPG~P~aa~~~~~~~v~P~l~~~~ 153 (163)
T TIGR02667 102 QLSYEEIGTSTIQSRALAGLANGTFVFCLPGSTGACRTAWDKIIAAQLDARH 153 (163)
T ss_pred HHhhcccCHHHHHhhhhheeeCCeEEEECCCCHHHHHHHHHHHHHHHHHHHh
Confidence 000111 012221 22235666888888766665553 45666665544
No 135
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=77.82 E-value=2.4 Score=40.72 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=19.2
Q ss_pred eEEEecCCcEEEECCCCcEEE
Q 021698 253 ERFDLTVGDYLFTPAGDVHRV 273 (309)
Q Consensus 253 ~~~~L~pGd~i~iP~g~~H~~ 273 (309)
....|+|||++|+|+|++|..
T Consensus 158 n~v~lkpGe~~fl~Agt~HA~ 178 (312)
T COG1482 158 NRVKLKPGEAFFLPAGTPHAY 178 (312)
T ss_pred cEEecCCCCEEEecCCCceee
Confidence 568899999999999999985
No 136
>PF10941 DUF2620: Protein of unknown function DUF2620; InterPro: IPR021238 This is a bacterial family of proteins with unknown function.
Probab=77.71 E-value=24 Score=29.03 Aligned_cols=92 Identities=23% Similarity=0.299 Sum_probs=56.3
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCCce
Q 021698 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGV 92 (309)
Q Consensus 13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~gi 92 (309)
|||+|| |---|+++++.+++.+-+-..+-.. .| ...|.+|.+ |.+|+-|--|-||-|=+++-
T Consensus 1 ~kIvig----Gql~K~ei~~~i~~~~~~~~ev~i~--sD--meAAm~vK~----G~aDYY~GACnTGgGgALam------ 62 (117)
T PF10941_consen 1 MKIVIG----GQLDKEEIAELIEKLGPGKVEVTIK--SD--MEAAMAVKS----GQADYYLGACNTGGGGALAM------ 62 (117)
T ss_pred CeEEEc----cccCHHHHHHHHHHHCCCcEEEEEe--ch--HHHHHHhhc----CCcCEeEeecCCCccHHHHH------
Confidence 688887 4334778888887776442222121 12 567788888 99999999999996654431
Q ss_pred EEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHH
Q 021698 93 FATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILD 132 (309)
Q Consensus 93 raa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~ 132 (309)
|-.---.|+|=-+++++..-.++..++.++
T Consensus 63 ----------AIallG~~~C~Tvs~pg~~~~eeeI~~~v~ 92 (117)
T PF10941_consen 63 ----------AIALLGYGKCATVSMPGKIPSEEEIRKEVA 92 (117)
T ss_pred ----------HHHHhCccceeEeecCCCCCCHHHHHHHHH
Confidence 111112355555666666666666555554
No 137
>COG3615 TehB Uncharacterized protein/domain, possibly involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=77.44 E-value=5.7 Score=31.58 Aligned_cols=53 Identities=26% Similarity=0.401 Sum_probs=35.1
Q ss_pred cccCccEE--EEEEeCEEEEEEEeCC------eEEEecCCcEEEECCCCcEEEEEcC-CeEEE
Q 021698 229 HHHTFGHD--LVVLEGKKSVWNLTKG------ERFDLTVGDYLFTPAGDVHRVKYYE-ETEFF 282 (309)
Q Consensus 229 H~H~~~e~--vyVl~G~l~v~~~~~~------~~~~L~pGd~i~iP~g~~H~~~n~~-d~~~~ 282 (309)
|.-..+.+ +-||+|.+.+....+. ..+... ++.-++||...|++...+ |.++.
T Consensus 30 HnTk~G~w~kLsVl~G~vk~~~~~ee~~~~~e~~~~~e-a~~~~~~PQ~WHrVea~tDD~e~~ 91 (99)
T COG3615 30 HNTKPGTWGKLSVLKGAVKFLGLAEEGETEPEHVFSIE-AQFPVFPPQAWHRVEAMTDDAEFN 91 (99)
T ss_pred ccCCCCceeEEEEEeceeEEEEEcCCCCccceEEEeec-CCCCccChhHeeeeeecccccEEE
Confidence 44344555 3689999998533232 234444 477889999999999777 45554
No 138
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=77.36 E-value=6.5 Score=39.32 Aligned_cols=43 Identities=33% Similarity=0.413 Sum_probs=36.2
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHH
Q 021698 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEV 56 (309)
Q Consensus 14 kI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~v 56 (309)
+|+||.|. .+-.||+++..-|.+.|.+|.|+|.-.-|-+...+
T Consensus 41 ~V~Vg~D~R~ss~~l~~a~~~gL~s~G~~V~~~g~~pTP~~~~a~ 85 (446)
T PRK14324 41 KILVGKDTRRSGYMIENALVSGLTSVGYNVIQIGPMPTPAIAFLT 85 (446)
T ss_pred eEEEEeCCCcCHHHHHHHHHHHHHHCCCeEEEecCccHHHHHHHH
Confidence 69999996 67799999999999999999999976655555544
No 139
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=77.04 E-value=3.4 Score=35.03 Aligned_cols=50 Identities=22% Similarity=0.177 Sum_probs=35.6
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhh
Q 021698 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGV 82 (309)
Q Consensus 29 ~l~~~l~~~g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~ 82 (309)
.|+++|+++|+++...+. +|...+...+.+...+ ..+|.-|+..|+|.|-
T Consensus 24 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~----~~~DlVittGG~s~g~ 75 (152)
T cd00886 24 ALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADE----DGVDLILTTGGTGLAP 75 (152)
T ss_pred HHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhc----CCCCEEEECCCcCCCC
Confidence 467789999999999885 5566666666666542 2567777777777663
No 140
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=76.78 E-value=7.7 Score=38.76 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=35.2
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHH
Q 021698 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAE 55 (309)
Q Consensus 14 kI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~ 55 (309)
+|+||.|. ++-.+|+++..-|.+.|.+|.|+|.-.-|-+...
T Consensus 44 ~VvVg~D~R~~s~~l~~a~~~gL~s~Gv~V~~~g~~ptP~~~~a 87 (450)
T PRK14314 44 RVVIGKDTRLSGYMFENALIAGLCSMGVDVLLVGPLPTPGIAFI 87 (450)
T ss_pred cEEEEeCCCcChHHHHHHHHHHHHHCCCeEEEecccCCHHHHHH
Confidence 69999997 5668999999999999999999997665555443
No 141
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=76.54 E-value=7.7 Score=38.71 Aligned_cols=45 Identities=27% Similarity=0.341 Sum_probs=37.9
Q ss_pred cEEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHH
Q 021698 13 LKIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVG 57 (309)
Q Consensus 13 mkI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va 57 (309)
-+|+||.|. ++-.||+.+.+-|.+.|.+|.|+|.-.-|-+...+.
T Consensus 41 ~~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~g~~pTP~~~~av~ 87 (448)
T PRK14316 41 PKVLVGRDTRISGDMLESALIAGLLSVGAEVMRLGVIPTPGVAYLTR 87 (448)
T ss_pred CeEEEEECCCcCHHHHHHHHHHHHHHCCCEEEEecccchHHHHHHHH
Confidence 369999997 666999999999999999999999877676655554
No 142
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=76.12 E-value=8.3 Score=38.79 Aligned_cols=58 Identities=26% Similarity=0.334 Sum_probs=42.1
Q ss_pred cEEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCcceEEEEecC
Q 021698 13 LKIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGT 78 (309)
Q Consensus 13 mkI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgt 78 (309)
.+|+||.|. .+..++.++.+-|.+.|++|.|+|...-|-++..+-.. .++-||+|.+|
T Consensus 45 ~~VvVG~D~R~ss~~~~~a~~~gl~~~G~~v~~~g~~pTP~~~f~~~~~--------~~~~gvmITAS 104 (464)
T COG1109 45 PKVVVGRDTRLSSEMLAAALAAGLTSAGIDVYDLGLVPTPAVAFATRKL--------GADAGVMITAS 104 (464)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHhc--------CCCeEEEEecC
Confidence 489999995 68899999999999999999999954444444443322 22356666554
No 143
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=75.85 E-value=4.1 Score=34.06 Aligned_cols=109 Identities=11% Similarity=0.053 Sum_probs=58.6
Q ss_pred HHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCCceEEEEeCCHHHHHHH
Q 021698 27 KDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNT 106 (309)
Q Consensus 27 k~~l~~~l~~~g~~v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~giraa~~~~~~~A~~~ 106 (309)
|+.+...|+..||+|+|+|.+-.++ .+.+++.+ ..++ .|.+ ++=+|-.| +.+ .....+-
T Consensus 16 kniv~~~L~~~GfeVidLG~~v~~e---~~v~aa~~----~~ad-iVgl-S~L~t~~~-----~~~-------~~~~~~l 74 (128)
T cd02072 16 NKILDHAFTEAGFNVVNLGVLSPQE---EFIDAAIE----TDAD-AILV-SSLYGHGE-----IDC-------KGLREKC 74 (128)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHH---HHHHHHHH----cCCC-EEEE-eccccCCH-----HHH-------HHHHHHH
Confidence 6788899999999999999965543 33334333 1222 2222 11111111 111 1233344
Q ss_pred HhhcCcce-eeeccc-ccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhHh
Q 021698 107 RSINNCNV-LAVSGM-STSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFF 159 (309)
Q Consensus 107 r~hNnaNv-l~~g~~-~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~l 159 (309)
|+.+=..+ +.+|+. .++++...+..+.+.+--|..-|+.+. .+.+|.+-|
T Consensus 75 ~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt---~~~~i~~~l 126 (128)
T cd02072 75 DEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGT---PPEEAIADL 126 (128)
T ss_pred HHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEECcCC---CHHHHHHHH
Confidence 44432234 334444 468888777777777777766555444 335555444
No 144
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=75.81 E-value=8.5 Score=38.47 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=35.5
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHH
Q 021698 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEV 56 (309)
Q Consensus 14 kI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~v 56 (309)
+|+||.|. ++-.||.++.+-|.+.|.+|.|+|.-.-|-+...+
T Consensus 44 ~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~g~~pTP~~~~a~ 88 (448)
T PRK14315 44 RVVIGKDTRLSGYMIENALVAGFTSVGMDVLLLGPIPTPAVAMLT 88 (448)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHCCCeEEEeCCcccHHHHHHH
Confidence 79999997 55579999999999999999999976655554433
No 145
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=74.67 E-value=1.5 Score=34.57 Aligned_cols=17 Identities=41% Similarity=0.804 Sum_probs=13.8
Q ss_pred eEEEEecCchhhhhhhc
Q 021698 71 RGLVACGTGVGVAIFAN 87 (309)
Q Consensus 71 ~gi~~cgtG~G~~i~aN 87 (309)
+=+..||+|+|.|+...
T Consensus 3 KIL~aCG~GvgSS~~ik 19 (93)
T COG3414 3 KILAACGNGVGSSTMIK 19 (93)
T ss_pred EEEEECCCCccHHHHHH
Confidence 45789999999998653
No 146
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=74.41 E-value=9.7 Score=30.43 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=22.3
Q ss_pred eCcccHHHHHHHHHHHHhCCCcEEEecCC
Q 021698 19 ADSFGAELKDALVSHLRSLNIDVEDLGTS 47 (309)
Q Consensus 19 ~D~~g~~lk~~l~~~l~~~g~~v~d~g~~ 47 (309)
.|+--+.+ ..+...|+..||+|+++|.+
T Consensus 9 ~e~H~lG~-~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 9 GDGHDIGK-NIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CchhhHHH-HHHHHHHHHCCCEEEECCCC
Confidence 45556666 47888999999999999974
No 147
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=73.88 E-value=10 Score=38.11 Aligned_cols=43 Identities=33% Similarity=0.358 Sum_probs=36.1
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHH
Q 021698 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEV 56 (309)
Q Consensus 14 kI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~v 56 (309)
+|+||.|. ++-.+|+++.+-|.+.|++|.|+|.-.-|-+...+
T Consensus 40 ~VvVg~D~R~ss~~l~~a~a~gL~s~Gi~V~~~g~~pTP~~~~av 84 (456)
T PRK15414 40 TIVLGGDVRLTSETLKLALAKGLQDAGVDVLDIGMSGTEEIYFAT 84 (456)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHCCCeEEEeCCcChHHHHHhh
Confidence 79999997 78899999999999999999999965555544433
No 148
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=73.20 E-value=4.7 Score=35.12 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=44.7
Q ss_pred EEEEEcCCCcCCccccCccEEEEEEeCEEEEEE--Ee-------CCeEEEecCCcEEEECCCCcEEEEEcC
Q 021698 216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWN--LT-------KGERFDLTVGDYLFTPAGDVHRVKYYE 277 (309)
Q Consensus 216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~--~~-------~~~~~~L~pGd~i~iP~g~~H~~~n~~ 277 (309)
..+++.||...|.|-|...-++=++.|.-.-++ .. +++...+.||..- +.||..|++.|.+
T Consensus 76 ~~~t~~PG~~~p~HnH~~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdihsv~n~~ 145 (191)
T COG5553 76 YHITLSPGVQYPPHNHLMWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDIHSVANTG 145 (191)
T ss_pred EEEEeCCCcccCCcccchheeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCeeeecccC
Confidence 357899999999999998887777888543211 11 2244577888866 6779999999886
No 149
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=73.17 E-value=11 Score=37.57 Aligned_cols=44 Identities=39% Similarity=0.363 Sum_probs=37.5
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHH
Q 021698 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVG 57 (309)
Q Consensus 14 kI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va 57 (309)
+|+||.|. ++-.||+++.+-|.+.|.+|.|+|.-.-|-+...+-
T Consensus 43 ~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~d~g~~pTP~~~~av~ 88 (443)
T PRK14320 43 FVIVGQDTRSSGGFLKFALVSGLNAAGIDVLDLGVVPTPVVAFMTV 88 (443)
T ss_pred eEEEEECCCcCHHHHHHHHHHHHHHCCCEEEEecccCchHHHHHHH
Confidence 59999996 677999999999999999999999877776666554
No 150
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=73.13 E-value=8.1 Score=34.27 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=43.7
Q ss_pred CcEEEEEe---CcccHHHHHHHHHHHHhCCCcEEEecCCC-------------------------CcchhHHHHHHhhcC
Q 021698 12 PLKIIAGA---DSFGAELKDALVSHLRSLNIDVEDLGTSD-------------------------YYSIGAEVGRRVSSS 63 (309)
Q Consensus 12 ~mkI~ig~---D~~g~~lk~~l~~~l~~~g~~v~d~g~~~-------------------------y~~~a~~va~~v~~~ 63 (309)
+-||++++ |.-.+. |+.+..+|+..||+|+|+|.+- ..+....+.+.+.+.
T Consensus 82 ~~~vl~~~~~gd~H~lG-~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~ 160 (201)
T cd02070 82 KGKVVIGTVEGDIHDIG-KNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEA 160 (201)
T ss_pred CCeEEEEecCCccchHH-HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHC
Confidence 45888885 433333 4778889999999999999741 123445556666551
Q ss_pred CCCCC-cceEEEEecCchhh
Q 021698 64 DSSET-TTRGLVACGTGVGV 82 (309)
Q Consensus 64 ~~~~~-~~~gi~~cgtG~G~ 82 (309)
+. .+.-|+++|...-.
T Consensus 161 ---~~~~~~~i~vGG~~~~~ 177 (201)
T cd02070 161 ---GLRDKVKVMVGGAPVNQ 177 (201)
T ss_pred ---CCCcCCeEEEECCcCCH
Confidence 22 25678888877654
No 151
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=72.57 E-value=12 Score=37.71 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=35.3
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEec-CCCCcchhHHH
Q 021698 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLG-TSDYYSIGAEV 56 (309)
Q Consensus 14 kI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g-~~~y~~~a~~v 56 (309)
+|+||.|. .+-.+|+++..-|.+.|.+|.|+| .-.-|-+...+
T Consensus 47 ~V~Vg~D~R~~s~~~~~a~~~gL~s~Gi~V~~~g~~~ptP~~~~~i 92 (487)
T cd05799 47 GVVIGYDSRHNSREFAELTAAVLAANGIKVYLFDDLRPTPLLSFAV 92 (487)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHHCCCEEEEeCCCCCCcHHHHHH
Confidence 69999998 777999999999999999999999 54444444433
No 152
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=72.51 E-value=3.4 Score=40.83 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=19.0
Q ss_pred eEEEecCCcEEEECCCCcEEE
Q 021698 253 ERFDLTVGDYLFTPAGDVHRV 273 (309)
Q Consensus 253 ~~~~L~pGd~i~iP~g~~H~~ 273 (309)
....|+|||++|+|+|++|..
T Consensus 237 N~v~l~pGeaifipAg~~HAy 257 (389)
T PRK15131 237 NVVKLNPGEAMFLFAETPHAY 257 (389)
T ss_pred eEEEeCCCCEEEeCCCCCeEE
Confidence 457899999999999999986
No 153
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=72.25 E-value=6 Score=32.67 Aligned_cols=47 Identities=34% Similarity=0.320 Sum_probs=33.6
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchh
Q 021698 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVG 81 (309)
Q Consensus 29 ~l~~~l~~~g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G 81 (309)
.|++.|++.|+++...+. ++...+...+.+.+. ++|.-|+..|||.|
T Consensus 23 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~------~~DlvittGG~g~g 71 (133)
T cd00758 23 ALEALLEDLGCEVIYAGVVPDDADSIRAALIEASR------EADLVLTTGGTGVG 71 (133)
T ss_pred HHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHh------cCCEEEECCCCCCC
Confidence 455667889999988764 455666666666644 37888888888876
No 154
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=72.24 E-value=19 Score=29.93 Aligned_cols=57 Identities=11% Similarity=0.040 Sum_probs=38.7
Q ss_pred EEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC--CCcchhHHHHHHhhcCCCCCCcceEEEEec
Q 021698 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS--DYYSIGAEVGRRVSSSDSSETTTRGLVACG 77 (309)
Q Consensus 14 kI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~--~y~~~a~~va~~v~~~~~~~~~~~gi~~cg 77 (309)
||+|++-| ....|++++..|++.|++++-+-.. .=..+-.++-+.. ..++++|++=+
T Consensus 1 kVFIvhg~-~~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~------~~~~faIvl~T 59 (125)
T PF10137_consen 1 KVFIVHGR-DLAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAA------DSVDFAIVLFT 59 (125)
T ss_pred CEEEEeCC-CHHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHh------ccCCEEEEEEc
Confidence 68999885 6699999999999999999855332 1111224444433 34789988743
No 155
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=71.80 E-value=9.8 Score=36.08 Aligned_cols=43 Identities=16% Similarity=0.147 Sum_probs=35.9
Q ss_pred EEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCC
Q 021698 235 HDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE 278 (309)
Q Consensus 235 e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d 278 (309)
-++++.+|.+++. .-++++..+.++..+++|.+..|.+.|...
T Consensus 40 ~li~v~~G~~~i~-~~~g~~l~i~~p~~~~~p~~~~~~~~~~~~ 82 (291)
T PRK15186 40 VLIKLTTGKISIT-TSSGEYITASGPMLIFLAKDQTIHITMEET 82 (291)
T ss_pred EEEEeccceEEEE-eCCCceEEeCCCeEEEEeCCcEEEEEeccc
Confidence 3568999999994 235566899999999999999999988874
No 156
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=71.16 E-value=6 Score=32.97 Aligned_cols=49 Identities=27% Similarity=0.327 Sum_probs=37.3
Q ss_pred HHHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhh
Q 021698 28 DALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGV 82 (309)
Q Consensus 28 ~~l~~~l~~~g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~ 82 (309)
..|++.|++.|++|.+.+. +++..+...+.+.+.+ .|.-|..-|||.|-
T Consensus 20 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~------~D~VittGG~g~~~ 70 (144)
T PF00994_consen 20 PFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDR------ADLVITTGGTGPGP 70 (144)
T ss_dssp HHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHT------TSEEEEESSSSSST
T ss_pred HHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhcc------CCEEEEcCCcCccc
Confidence 3466777889999999886 6788888888666654 47788888888764
No 157
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.89 E-value=3 Score=42.14 Aligned_cols=60 Identities=25% Similarity=0.309 Sum_probs=43.9
Q ss_pred EEEcCCCc-CCccccCccEEEEEEeCEEEEEEEeC-----------------C------eEEEecCCcEEEECCCCcEEE
Q 021698 218 VRFKAGSV-EPAHHHTFGHDLVVLEGKKSVWNLTK-----------------G------ERFDLTVGDYLFTPAGDVHRV 273 (309)
Q Consensus 218 v~l~pG~~-~p~H~H~~~e~vyVl~G~l~v~~~~~-----------------~------~~~~L~pGd~i~iP~g~~H~~ 273 (309)
.--+||+. .++|+-..+-|+.-++|+-..+++-. + -...|+|||.+|+|.|.+|+.
T Consensus 322 YLTPagSqGfaPHyDdIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA 401 (629)
T KOG3706|consen 322 YLTPAGSQGFAPHYDDIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQA 401 (629)
T ss_pred eecCCCCCCCCCchhhhhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeec
Confidence 33466654 58999999888888999876542210 0 125789999999999999998
Q ss_pred EEcC
Q 021698 274 KYYE 277 (309)
Q Consensus 274 ~n~~ 277 (309)
....
T Consensus 402 ~t~~ 405 (629)
T KOG3706|consen 402 DTPA 405 (629)
T ss_pred cccc
Confidence 7665
No 158
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=70.57 E-value=15 Score=33.23 Aligned_cols=71 Identities=20% Similarity=0.118 Sum_probs=45.6
Q ss_pred CcEEEEEe---CcccHHHHHHHHHHHHhCCCcEEEecCCC-------------------------CcchhHHHHHHhhcC
Q 021698 12 PLKIIAGA---DSFGAELKDALVSHLRSLNIDVEDLGTSD-------------------------YYSIGAEVGRRVSSS 63 (309)
Q Consensus 12 ~mkI~ig~---D~~g~~lk~~l~~~l~~~g~~v~d~g~~~-------------------------y~~~a~~va~~v~~~ 63 (309)
+-||++++ |.-... |+-+...|+..||+|+|+|.+- ..+....+.+.+.+.
T Consensus 88 ~~~vvl~t~~gd~HdiG-~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~ 166 (213)
T cd02069 88 KGKIVLATVKGDVHDIG-KNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRR 166 (213)
T ss_pred CCeEEEEeCCCchhHHH-HHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEccchhccHHHHHHHHHHHHhc
Confidence 34888886 443333 4778888999999999999851 122345555555541
Q ss_pred CCCCCcceEEEEecCchhhhhhhc
Q 021698 64 DSSETTTRGLVACGTGVGVAIFAN 87 (309)
Q Consensus 64 ~~~~~~~~gi~~cgtG~G~~i~aN 87 (309)
+. +--|+++|.++--..+.+
T Consensus 167 ---~~-~~~i~vGG~~~~~~~~~~ 186 (213)
T cd02069 167 ---GI-KIPLLIGGAATSRKHTAV 186 (213)
T ss_pred ---CC-CCeEEEEChhcCHHHHhh
Confidence 33 566777777666555554
No 159
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=70.02 E-value=9.1 Score=29.94 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=28.1
Q ss_pred EEEcCCCcCCccccCccEE--EEEE-----eCEEEEEEEeC---------------------CeEEEecCCcEEEECCCC
Q 021698 218 VRFKAGSVEPAHHHTFGHD--LVVL-----EGKKSVWNLTK---------------------GERFDLTVGDYLFTPAGD 269 (309)
Q Consensus 218 v~l~pG~~~p~H~H~~~e~--vyVl-----~G~l~v~~~~~---------------------~~~~~L~pGd~i~iP~g~ 269 (309)
....+|+..+.|.|+...+ +|-+ +|.+.+ ... ......++|+.+.+|+..
T Consensus 5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l 82 (101)
T PF13759_consen 5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRF--HDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWL 82 (101)
T ss_dssp EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEE--E-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTS
T ss_pred EEeCCCCccCceECCCcCEEEEEEEECCCCCCceee--eCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCC
Confidence 3456777788888877544 2223 344454 211 122467799999999999
Q ss_pred cEEEEEc
Q 021698 270 VHRVKYY 276 (309)
Q Consensus 270 ~H~~~n~ 276 (309)
.|++.-.
T Consensus 83 ~H~v~p~ 89 (101)
T PF13759_consen 83 WHGVPPN 89 (101)
T ss_dssp EEEE---
T ss_pred EEeccCc
Confidence 9998544
No 160
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=69.99 E-value=17 Score=33.41 Aligned_cols=69 Identities=12% Similarity=0.029 Sum_probs=47.2
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC---C-------CcchhHHHHHHhhcCCCCCCcceEEEEecCchhh
Q 021698 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS---D-------YYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGV 82 (309)
Q Consensus 13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~---~-------y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~ 82 (309)
.||+|.+=. =-++-+.++++|++.|+||.+++.. + -|+.....++.+.. ..--+|++++|++-.
T Consensus 121 ~RIalvTPY-~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~-----~~aDAifisCTnLrt 194 (239)
T TIGR02990 121 RRISLLTPY-TPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFD-----PDADALFLSCTALRA 194 (239)
T ss_pred CEEEEECCC-cHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcC-----CCCCEEEEeCCCchh
Confidence 489998875 5588899999999999999998432 1 12333445555533 345788888888755
Q ss_pred hhhhc
Q 021698 83 AIFAN 87 (309)
Q Consensus 83 ~i~aN 87 (309)
.=+..
T Consensus 195 ~~vi~ 199 (239)
T TIGR02990 195 ATCAQ 199 (239)
T ss_pred HHHHH
Confidence 44433
No 161
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=68.93 E-value=14 Score=36.76 Aligned_cols=43 Identities=28% Similarity=0.325 Sum_probs=36.2
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHH
Q 021698 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEV 56 (309)
Q Consensus 14 kI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~v 56 (309)
+|+||.|. .+-.+|+.+.+-|.+.|++|.|+|.-.-|-++..+
T Consensus 38 ~VvVg~D~R~~s~~~~~a~~~gL~s~G~~V~~~g~~pTP~~~~~v 82 (443)
T cd03089 38 KVVVGRDGRLSSPELAAALIEGLLAAGCDVIDIGLVPTPVLYFAT 82 (443)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHcCCcEEEeCCcchHHHHHHH
Confidence 69999996 56699999999999999999999976666655544
No 162
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=67.81 E-value=18 Score=35.89 Aligned_cols=45 Identities=29% Similarity=0.344 Sum_probs=37.9
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHH
Q 021698 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGR 58 (309)
Q Consensus 14 kI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va~ 58 (309)
+|+||.|. ++-.||+.+..-|.+.|.+|.|+|.-.-|-+...+..
T Consensus 39 ~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~g~~pTP~~~~av~~ 85 (434)
T cd05802 39 KVLIGKDTRISGYMLESALAAGLTSAGVDVLLLGVIPTPAVAYLTRK 85 (434)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHCCCcEEEEcccchHHHHHHHHH
Confidence 69999996 5668999999999999999999998776666665543
No 163
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=67.68 E-value=18 Score=36.21 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=36.8
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHH
Q 021698 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVG 57 (309)
Q Consensus 14 kI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va 57 (309)
+|+||.|. ++-.||+++.+-|.+.|.+|.|+|.-.-|-+...+-
T Consensus 46 ~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~g~~pTP~~~~av~ 91 (448)
T PRK14318 46 VAVVGRDPRASGEFLEAAVSAGLASAGVDVLRVGVLPTPAVAYLTA 91 (448)
T ss_pred eEEEEeCCCcCHHHHHHHHHHHHHHCCCEEEEecccCchHHHHHHH
Confidence 59999996 666899999999999999999999766666555444
No 164
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=67.61 E-value=18 Score=36.06 Aligned_cols=44 Identities=27% Similarity=0.328 Sum_probs=37.1
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHH
Q 021698 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVG 57 (309)
Q Consensus 14 kI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va 57 (309)
+|+||.|. ++-.||+++..-|.+.|.+|.|+|.-.-|-+...+-
T Consensus 44 ~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~g~~pTP~~~~av~ 89 (440)
T PRK14323 44 VVLLGKDTRQSGDMLEAALAAGLTSRGVRVEHLGVLPTPGVSYLTR 89 (440)
T ss_pred eEEEEeCCCccHHHHHHHHHHHHHHCCCEEEEecccChHHHHHHHH
Confidence 69999996 566899999999999999999999877676655543
No 165
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=67.54 E-value=18 Score=36.03 Aligned_cols=44 Identities=30% Similarity=0.399 Sum_probs=36.8
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHH
Q 021698 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVG 57 (309)
Q Consensus 14 kI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va 57 (309)
+|+||.|- .+-.+|+.+.+-|.+.|.+|.|+|.-.-|.+...+.
T Consensus 39 ~Vvvg~D~R~~s~~l~~a~~~gL~~~G~~V~~~g~~pTP~~~~a~~ 84 (445)
T cd05803 39 KIVVGRDGRPSGPMLEKIVIGALLACGCDVIDLGIAPTPTVQVLVR 84 (445)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHCCCeEEEeCCCCchHHHHHHH
Confidence 69999996 566999999999999999999999766666555444
No 166
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=66.63 E-value=12 Score=32.02 Aligned_cols=82 Identities=11% Similarity=0.080 Sum_probs=55.6
Q ss_pred hhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCCce--EEEEeCCHHHHHHHHhhcCcceeeecccc-------c
Q 021698 52 IGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGV--FATTCLTPADALNTRSINNCNVLAVSGMS-------T 122 (309)
Q Consensus 52 ~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~gi--raa~~~~~~~A~~~r~hNnaNvl~~g~~~-------~ 122 (309)
+|.++++.|.+ |. .++-++|-=..-.|..++.- .-.+.++...|...+++++.||+++||.+ +
T Consensus 9 IA~~A~~~I~~----~~----~Ifld~GtT~~~la~~L~~~~~ltVvTnsl~ia~~l~~~~~~~vi~~GG~~~~~~~~~~ 80 (161)
T PF00455_consen 9 IARKAASLIED----GD----TIFLDSGTTTLELAKYLPDKKNLTVVTNSLPIANELSENPNIEVILLGGEVNPKSLSFV 80 (161)
T ss_pred HHHHHHHhCCC----CC----EEEEECchHHHHHHHHhhcCCceEEEECCHHHHHHHHhcCceEEEEeCCEEEcCCCcEE
Confidence 56667777665 22 34555565566666666666 45667888889999999999999999984 5
Q ss_pred CHHHHHHHHHHHhcCCCCC
Q 021698 123 SKESAVEILDTWLKTPFKA 141 (309)
Q Consensus 123 ~~~~a~~i~~~~l~~~f~~ 141 (309)
|+.....+=+-.++.-|-+
T Consensus 81 G~~a~~~l~~~~~d~afi~ 99 (161)
T PF00455_consen 81 GPIALEALRQFRFDKAFIG 99 (161)
T ss_pred CchHHHHHHhhccceEEec
Confidence 6655555555555555554
No 167
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=66.63 E-value=18 Score=36.06 Aligned_cols=44 Identities=25% Similarity=0.269 Sum_probs=36.7
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHH
Q 021698 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVG 57 (309)
Q Consensus 14 kI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va 57 (309)
+|+||.|. ++-.||+.+..-|.+.|.+|.|+|.-.-|-+...+.
T Consensus 41 ~VvVg~D~R~ss~~l~~a~~~gL~s~Gv~V~~~g~~pTP~~~~a~~ 86 (443)
T PRK10887 41 KVLIGKDTRISGYMLESALEAGLAAAGVDVLLTGPMPTPAVAYLTR 86 (443)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHHCCCeEEEECCcChHHHHHHHH
Confidence 69999997 566899999999999999999999766666555444
No 168
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=66.55 E-value=15 Score=36.41 Aligned_cols=44 Identities=30% Similarity=0.414 Sum_probs=36.9
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHH
Q 021698 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVG 57 (309)
Q Consensus 14 kI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va 57 (309)
+|+||.|. ++-.+|+++.+-|.+.|.+|.|+|.-.-|-+...+.
T Consensus 35 ~VvVg~D~R~~s~~l~~a~~~gL~~~G~~V~~~g~~~tP~~~~~v~ 80 (439)
T cd03087 35 TVVVGRDTRTSGPMLKNAVIAGLLSAGCDVIDIGIVPTPALQYAVR 80 (439)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHCCCeEEEcCccChHHHHHHHH
Confidence 69999996 667999999999999999999999766666555443
No 169
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=65.65 E-value=18 Score=36.28 Aligned_cols=43 Identities=23% Similarity=0.213 Sum_probs=36.6
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHH
Q 021698 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEV 56 (309)
Q Consensus 14 kI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~v 56 (309)
+|+||.|. ++-.||.++..-|.+.|.+|.|+|.-.-|-+...+
T Consensus 57 ~VvVG~D~R~ss~~l~~a~~~gL~s~Gv~V~~~g~~pTP~~~~av 101 (465)
T PRK14317 57 PVLIGQDSRNSSDMLAMALAAGLTAAGREVWHLGLCPTPAVAYLT 101 (465)
T ss_pred cEEEEECCCCCHHHHHHHHHHHHHHCCCeEEEecccCcHHHHHHH
Confidence 69999996 67799999999999999999999976666655544
No 170
>COG1741 Pirin-related protein [General function prediction only]
Probab=65.57 E-value=60 Score=30.69 Aligned_cols=85 Identities=26% Similarity=0.228 Sum_probs=46.9
Q ss_pred EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCC--eEEE----------E
Q 021698 216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE--TEFF----------I 283 (309)
Q Consensus 216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d--~~~~----------i 283 (309)
..+.+.+|...+.+.-...-++||++|.+++ +++.. ..+|-+.+..|..=.+...++ ..++ +
T Consensus 176 ~dl~l~~g~~~~l~~~~~~~~l~v~~G~l~v----~g~~~--~~~~~l~i~~g~~i~l~a~~~~~a~vLL~~g~P~~~~~ 249 (276)
T COG1741 176 VDLRLEAGARLQLPPAGRRAYLYVIEGTLEV----NGQHE--TDGDGLAILDGDEITLVADSPAGARVLLLDGPPLGEPI 249 (276)
T ss_pred EEEEeCCCceEecCCCCceEEEEEEEeEEEE----ccccc--ccccceEEecCCeEEEEecCCCCeEEEEEcCCCCCCce
Confidence 3467788887776622234578999999888 23322 233333333333222222221 3332 2
Q ss_pred EEcCCcccccchhHHHHHHHHhh
Q 021698 284 KWDGRWDMFFDEDLETAKKAVEK 306 (309)
Q Consensus 284 ~~~g~~~i~~~~~~~~a~~~~~~ 306 (309)
.|-+.|..--.+++++|++.-++
T Consensus 250 ~~~g~fV~~s~e~i~~a~~~~~~ 272 (276)
T COG1741 250 VIYGPFVMNSKEEIEQAKRDWRE 272 (276)
T ss_pred eEECCcccCCHHHHHHHHHHHHc
Confidence 34455556666889999987653
No 171
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=65.55 E-value=19 Score=32.91 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=17.1
Q ss_pred EEEEcCCCcCCccccCcc-EEEEEEe-CEEEE
Q 021698 217 IVRFKAGSVEPAHHHTFG-HDLVVLE-GKKSV 246 (309)
Q Consensus 217 ~v~l~pG~~~p~H~H~~~-e~vyVl~-G~l~v 246 (309)
++.+.+|+..|.|.|... |-+...- |.+.+
T Consensus 91 im~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i 122 (225)
T PF07385_consen 91 IMIVREGQVTPMHFHWKKMEDIINRGGGNLVI 122 (225)
T ss_dssp EEEE-BT-EEEEEEESS--EEEEEEEES-EEE
T ss_pred heeccCCCcCCcccCcchhhheeecCCceEEE
Confidence 567788999999999764 4344443 35433
No 172
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=65.19 E-value=23 Score=35.43 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=47.7
Q ss_pred cEEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEe-cCCCCcchhHHHHHH------hhcCCCCCCcceEEEEecCc
Q 021698 13 LKIIAGADS--FGAELKDALVSHLRSLNIDVEDL-GTSDYYSIGAEVGRR------VSSSDSSETTTRGLVACGTG 79 (309)
Q Consensus 13 mkI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~-g~~~y~~~a~~va~~------v~~~~~~~~~~~gi~~cgtG 79 (309)
-+|+||.|. ++-.||+++..-|.+.|.+|.|+ |.-..|-+...+.+. +..++.+-...-||-++..+
T Consensus 40 ~~Vvvg~D~R~ss~~l~~a~~~gL~s~G~~V~~~~g~~pTP~~~~a~~~~~~~gGI~ITaSHnp~~~ngiK~~~~~ 115 (461)
T cd05800 40 RGVVVGYDTRFLSEEFARAVAEVLAANGIDVYLSDRPVPTPAVSWAVKKLGAAGGVMITASHNPPEYNGVKVKPAF 115 (461)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHHHHHCCCEEEEcCCCCCchHHHHHHHHhCCCeeEEEccCCCCcccCeEEEeCCC
Confidence 379999996 47799999999999999999999 676777665555543 11111233445688886543
No 173
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=65.05 E-value=30 Score=28.47 Aligned_cols=61 Identities=15% Similarity=0.248 Sum_probs=42.9
Q ss_pred EEEEEeCcccHHHHH------------------HHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCcceEEEE
Q 021698 14 KIIAGADSFGAELKD------------------ALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVA 75 (309)
Q Consensus 14 kI~ig~D~~g~~lk~------------------~l~~~l~~~g~~v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~ 75 (309)
++.|++|-+.-.|.+ .++++.+++|.+++-+-..||.|+-.++-..... ..+.-+++
T Consensus 17 ~~~i~aDgGa~~l~~~~g~~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~kD~TD~e~Al~~~~~~-----~~~~i~v~ 91 (123)
T PF04263_consen 17 DFIIAADGGANRLYELFGIKPDLIIGDFDSISPEVLEFYKSKGVEIIHFPEKDYTDLEKALEYAIEQ-----GPDEIIVL 91 (123)
T ss_dssp SEEEEETTHHHHHHHTTTT--SEEEC-SSSS-HHHHHHHHHCTTEEEEE-STTS-HHHHHHHHHHHT-----TTSEEEEE
T ss_pred CEEEEEchHHHHHHHhcCCCCCEEEecCCCCChHHHHHHHhhccceecccccccCHHHHHHHHHHHC-----CCCEEEEE
Confidence 466777776555544 4789999999999988877899976666665443 55688888
Q ss_pred ecCc
Q 021698 76 CGTG 79 (309)
Q Consensus 76 cgtG 79 (309)
+++|
T Consensus 92 Ga~G 95 (123)
T PF04263_consen 92 GALG 95 (123)
T ss_dssp S-SS
T ss_pred ecCC
Confidence 8888
No 174
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=64.71 E-value=3.9 Score=30.88 Aligned_cols=15 Identities=33% Similarity=0.835 Sum_probs=12.4
Q ss_pred EEEEecCchhhhhhh
Q 021698 72 GLVACGTGVGVAIFA 86 (309)
Q Consensus 72 gi~~cgtG~G~~i~a 86 (309)
.+++||+|+|+|...
T Consensus 2 ilvvC~~G~~tS~ll 16 (86)
T cd05563 2 ILAVCGSGLGSSLML 16 (86)
T ss_pred EEEECCCCccHHHHH
Confidence 589999999997654
No 175
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=64.41 E-value=17 Score=32.62 Aligned_cols=58 Identities=16% Similarity=0.020 Sum_probs=38.8
Q ss_pred EEEEcCCCcCCccccCccEE---EEEE----eCEEEEEEEeCC-------------------e--EEEecCCcEEEECCC
Q 021698 217 IVRFKAGSVEPAHHHTFGHD---LVVL----EGKKSVWNLTKG-------------------E--RFDLTVGDYLFTPAG 268 (309)
Q Consensus 217 ~v~l~pG~~~p~H~H~~~e~---vyVl----~G~l~v~~~~~~-------------------~--~~~L~pGd~i~iP~g 268 (309)
...+.+|+....|.|+...+ .||- .|.+++ .... . ...-++|+.+.+|+.
T Consensus 100 ~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f--~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~ 177 (201)
T TIGR02466 100 VNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKF--EDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESW 177 (201)
T ss_pred EEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeE--ecCcchhhhccccccCccccccCccEEECCCCCeEEEECCC
Confidence 35667899999999998765 2443 345554 2110 0 123479999999999
Q ss_pred CcEEEEEc
Q 021698 269 DVHRVKYY 276 (309)
Q Consensus 269 ~~H~~~n~ 276 (309)
..|++.--
T Consensus 178 L~H~v~p~ 185 (201)
T TIGR02466 178 LRHEVPPN 185 (201)
T ss_pred CceecCCC
Confidence 99998543
No 176
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=63.98 E-value=20 Score=25.99 Aligned_cols=66 Identities=21% Similarity=0.256 Sum_probs=40.0
Q ss_pred EEcCCCcCCccccCccEEEEEEeCEEEEEEEeC-Ce---EEEecCCcEEEECC-----CCcEEEEEcCCeEEEEE
Q 021698 219 RFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK-GE---RFDLTVGDYLFTPA-----GDVHRVKYYEETEFFIK 284 (309)
Q Consensus 219 ~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~-~~---~~~L~pGd~i~iP~-----g~~H~~~n~~d~~~~i~ 284 (309)
++++|..+-..-.+...+.+|++|.+.+..... ++ ...+.+|+++-..+ ...+.+.+.+++.++.+
T Consensus 3 ~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i 77 (91)
T PF00027_consen 3 TYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRI 77 (91)
T ss_dssp EESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEE
T ss_pred EECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEE
Confidence 455665553333345678899999999853322 33 25788888764432 23445677777776544
No 177
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=63.68 E-value=23 Score=35.46 Aligned_cols=44 Identities=34% Similarity=0.460 Sum_probs=36.4
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHH
Q 021698 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVG 57 (309)
Q Consensus 14 kI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va 57 (309)
+|+||.|. .+-.+|+.+..-|.+.|.+|.|+|.-.-|-+...+-
T Consensus 38 ~VvVg~D~R~~s~~l~~a~~~gL~s~G~~V~~~g~~pTP~~~~av~ 83 (449)
T PRK14321 38 KVVVGKDTRTSSEMLKNALISGLLSTGVDVIDIGLAPTPLTGFAIK 83 (449)
T ss_pred cEEEEeCCCCChHHHHHHHHHHHHHCCCeEEEeCCcCCcHHHHHHH
Confidence 69999997 566999999999999999999999766665554443
No 178
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.62 E-value=24 Score=27.53 Aligned_cols=48 Identities=17% Similarity=0.195 Sum_probs=36.2
Q ss_pred ccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeE
Q 021698 233 FGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE 280 (309)
Q Consensus 233 ~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~ 280 (309)
..|+.-|++|.+++.+-..+++....||+.+.+|.+..-.++-...+.
T Consensus 41 ~~E~Mtvv~Gal~v~lpgs~dWq~~~~Ge~F~VpgnS~F~lqVaeat~ 88 (94)
T COG3123 41 APEEMTVVSGALTVLLPGSDDWQVYTAGEVFNVPGNSEFDLQVAEATS 88 (94)
T ss_pred CceEEEEEeeEEEEEcCCCcccEEecCCceEEcCCCCeEEEEEeeeee
Confidence 357788999999995333567788899999999998876666555443
No 179
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=63.45 E-value=14 Score=32.48 Aligned_cols=119 Identities=20% Similarity=0.235 Sum_probs=72.3
Q ss_pred cEEEEEeCcc--cHH---HHHHHHHHHHhCCCcEEEec--CCCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhh---
Q 021698 13 LKIIAGADSF--GAE---LKDALVSHLRSLNIDVEDLG--TSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGV--- 82 (309)
Q Consensus 13 mkI~ig~D~~--g~~---lk~~l~~~l~~~g~~v~d~g--~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~--- 82 (309)
.+|+.-||.. |.. ==..|.+.|++.||++.++- ++++..+-..+...+.+ . +|-.|..-|||++-
T Consensus 10 ~~VvTVSd~r~~~~~~D~sG~~l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~----~-~DvvlttGGTG~t~RDv 84 (169)
T COG0521 10 IAVVTVSDRRSTGEYEDKSGPLLVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDE----D-VDVVLTTGGTGITPRDV 84 (169)
T ss_pred EEEEEEecccccCCccccchhHHHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcC----C-CCEEEEcCCccCCCCcC
Confidence 5678889985 222 23578899999999996544 35666676777777665 5 89999999999762
Q ss_pred ------hhhhcCCCce----EEEEeCC-HHHHHHHHh----hcCcceeeecccccCHHHHHH-HHHHHhc
Q 021698 83 ------AIFANKNPGV----FATTCLT-PADALNTRS----INNCNVLAVSGMSTSKESAVE-ILDTWLK 136 (309)
Q Consensus 83 ------~i~aNK~~gi----raa~~~~-~~~A~~~r~----hNnaNvl~~g~~~~~~~~a~~-i~~~~l~ 136 (309)
.++==++||. |.---.+ -.+|-++|. .|++=|++|++.--+..++.+ |+..-+.
T Consensus 85 TpEA~~~~~dKeipGFgE~fR~~S~~~~g~~AiLSRa~aGv~~~tlIf~LPGSp~Avr~~l~~iI~p~l~ 154 (169)
T COG0521 85 TPEATRPLFDKEIPGFGELFRRLSLEEIGPTAILSRAVAGVRNGTLIFNLPGSPGAVRDALEGIILPELD 154 (169)
T ss_pred CHHHHHHHHhccCCcHHHHHHHhhhhcCCCcEEEeeeeeEEeCCeEEEEcCCChhhHHHHHHHHHHHhcc
Confidence 2333344442 2211122 333444443 356666666666666666654 5544433
No 180
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=63.39 E-value=22 Score=33.19 Aligned_cols=61 Identities=21% Similarity=0.318 Sum_probs=33.3
Q ss_pred cCCccccCc---------cEEEEE-Ee---CEEEEEEEeC----CeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEc
Q 021698 225 VEPAHHHTF---------GHDLVV-LE---GKKSVWNLTK----GERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD 286 (309)
Q Consensus 225 ~~p~H~H~~---------~e~vyV-l~---G~l~v~~~~~----~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~ 286 (309)
..|+|.|+. +|..|- +. |-.--....+ ++.+.++-||.+.+|+| -|...+......+++|.
T Consensus 165 SyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~~~V~~~d~V~iP~g-yHp~~aapGy~~Yylw~ 242 (261)
T PF04962_consen 165 SYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEHYVVRNGDAVLIPSG-YHPVVAAPGYDMYYLWV 242 (261)
T ss_dssp S-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEEEEEETTEEEEESTT-B-SEEEEEESSEEEEEE
T ss_pred CcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEEEEEECCCEEEeCCC-CCCcCcCCCcCcEEEEE
Confidence 359999998 444331 12 4332111333 56789999999999999 55444433344444443
No 181
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=63.14 E-value=10 Score=33.46 Aligned_cols=34 Identities=29% Similarity=0.354 Sum_probs=25.0
Q ss_pred CccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECC
Q 021698 232 TFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPA 267 (309)
Q Consensus 232 ~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~ 267 (309)
....++|+++|.+++ ..+++.+.|.+||.+++..
T Consensus 134 ~~~~l~~~~~G~~~i--~~~~~~~~L~~~d~l~~~~ 167 (184)
T PF05962_consen 134 ASTVLVYVLEGAWSI--TEGGNCISLSAGDLLLIDD 167 (184)
T ss_dssp -SEEEEEESSS-EEE--CCCEEEEEE-TT-EEEEES
T ss_pred CCEEEEEEeeCcEEE--ecCCCceEcCCCCEEEEeC
Confidence 345668999999888 5566899999999999987
No 182
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=61.18 E-value=23 Score=35.20 Aligned_cols=44 Identities=27% Similarity=0.307 Sum_probs=36.6
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHH
Q 021698 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVG 57 (309)
Q Consensus 14 kI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va 57 (309)
+|+||.|. .+-.+|+.+.+-|.+.|.+|.|+|.-.-|-++..+.
T Consensus 36 ~VvVG~D~R~ss~~~~~a~~~gL~s~G~~V~~~g~~pTP~~~~av~ 81 (441)
T cd05805 36 TVTVSRDASRASRMLKRALISGLLSTGVNVRDLGALPLPVARYAIR 81 (441)
T ss_pred EEEEEcCCChhHHHHHHHHHHHHHhCCCeEEecCCcCchHHHHHHH
Confidence 69999985 677999999999999999999999766665555443
No 183
>PRK14319 glmM phosphoglucosamine mutase; Provisional
Probab=61.14 E-value=25 Score=34.89 Aligned_cols=41 Identities=29% Similarity=0.314 Sum_probs=35.5
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhH
Q 021698 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGA 54 (309)
Q Consensus 14 kI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~ 54 (309)
+|+||.|. ++-.||+++..-|.+.|.+|.|+|.-.-|-+..
T Consensus 36 ~V~Vg~D~R~ss~~l~~a~~~gL~s~G~~V~d~g~~pTP~~~~ 78 (430)
T PRK14319 36 KIFIAKDTRASGDMLEAALVAGITSAGADVYRCGVLPTPALAL 78 (430)
T ss_pred cEEEEeCCCCChHHHHHHHHHHHHHCCCeEEEeCCcCcHHHHH
Confidence 59999996 677999999999999999999999876665544
No 184
>PLN02288 mannose-6-phosphate isomerase
Probab=60.41 E-value=8.8 Score=38.10 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=19.7
Q ss_pred eEEEecCCcEEEECCCCcEEEEE
Q 021698 253 ERFDLTVGDYLFTPAGDVHRVKY 275 (309)
Q Consensus 253 ~~~~L~pGd~i~iP~g~~H~~~n 275 (309)
....|+||+++|+|+|++|....
T Consensus 251 N~v~L~PGeaifl~ag~~HAYl~ 273 (394)
T PLN02288 251 NYVKLNPGEALYLGANEPHAYLS 273 (394)
T ss_pred ceEecCCCCEEEecCCCCceecC
Confidence 45789999999999999998643
No 185
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=60.37 E-value=14 Score=30.99 Aligned_cols=52 Identities=33% Similarity=0.397 Sum_probs=35.3
Q ss_pred CcccHHHHHHHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchh
Q 021698 20 DSFGAELKDALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVG 81 (309)
Q Consensus 20 D~~g~~lk~~l~~~l~~~g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G 81 (309)
|..+.- |.+.|++.|++|...+. ++..++...+.+... .+|.-|+-.|+|.|
T Consensus 26 d~n~~~----l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~------~~DliIttGG~g~g 79 (144)
T TIGR00177 26 DSNGPL----LAALLEEAGFNVSRLGIVPDDPEEIREILRKAVD------EADVVLTTGGTGVG 79 (144)
T ss_pred eCcHHH----HHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHh------CCCEEEECCCCCCC
Confidence 555544 45667778999999885 455566666655543 36777777777776
No 186
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=60.24 E-value=30 Score=34.49 Aligned_cols=44 Identities=27% Similarity=0.345 Sum_probs=36.6
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHH
Q 021698 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVG 57 (309)
Q Consensus 14 kI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va 57 (309)
+|+||.|. ++-.||+.+.+-|.+.|++|.|+|.-.-|-+...+-
T Consensus 40 ~V~Vg~D~R~~s~~l~~a~~~gL~s~G~~V~~~g~~pTP~~~~av~ 85 (443)
T TIGR01455 40 RVVIGKDTRLSGYMLENALAAGLNSAGVDVLLLGPLPTPAVAYLTR 85 (443)
T ss_pred eEEEEeCCCcChHHHHHHHHHHHHHCCCeEEEeCCcCcHHHHHHHH
Confidence 59999996 667999999999999999999999766665555444
No 187
>PRK14322 glmM phosphoglucosamine mutase; Provisional
Probab=59.91 E-value=24 Score=34.96 Aligned_cols=43 Identities=28% Similarity=0.360 Sum_probs=35.8
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHH
Q 021698 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEV 56 (309)
Q Consensus 14 kI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~v 56 (309)
+|+||.|. ++-.||.++..-|.+.|.+|+|+|.-.-|-+...+
T Consensus 39 ~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~g~~pTP~~~~av 83 (429)
T PRK14322 39 KVIVGKDTRVSGDSLEAAISAGLTSMGVDVLLCGILPTPAVALLT 83 (429)
T ss_pred cEEEEeCCCcCHHHHHHHHHHHHHHCCCeEEEecCcCHHHHHHHH
Confidence 49999996 66799999999999999999999976666555533
No 188
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=59.83 E-value=15 Score=30.16 Aligned_cols=48 Identities=25% Similarity=0.286 Sum_probs=31.0
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhh
Q 021698 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGV 82 (309)
Q Consensus 29 ~l~~~l~~~g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~ 82 (309)
.|.+.|++.|+++.+.+. +|...+...+.+.+. .+|.-|...|||.|-
T Consensus 22 ~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~------~~dliittGG~g~g~ 71 (135)
T smart00852 22 ALAELLTELGIEVTRYVIVPDDKEAIKEALREALE------RADLVITTGGTGPGP 71 (135)
T ss_pred HHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHh------CCCEEEEcCCCCCCC
Confidence 456678899999998875 344455555544442 367666666666553
No 189
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=59.32 E-value=72 Score=28.20 Aligned_cols=37 Identities=32% Similarity=0.423 Sum_probs=27.7
Q ss_pred cEEEEEe---CcccHHHHHHHHHHHHhCCCcEEEecCCCCc
Q 021698 13 LKIIAGA---DSFGAELKDALVSHLRSLNIDVEDLGTSDYY 50 (309)
Q Consensus 13 mkI~ig~---D~~g~~lk~~l~~~l~~~g~~v~d~g~~~y~ 50 (309)
-||++++ |.-.+. |..+...|+.+||+|+|+|.+--+
T Consensus 85 ~~vv~~t~~gd~H~lG-~~~v~~~l~~~G~~vi~LG~~vp~ 124 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIG-KNIVVTMLRANGFDVIDLGRDVPI 124 (197)
T ss_pred CeEEEEeCCCchhHHH-HHHHHHHHHhCCcEEEECCCCCCH
Confidence 4788886 333344 477888999999999999997543
No 190
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=59.26 E-value=25 Score=35.10 Aligned_cols=67 Identities=12% Similarity=0.077 Sum_probs=49.1
Q ss_pred EEEEeCc--------ccHHHHHHHHHHHHhCCCcEEEecCCC-CcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhh
Q 021698 15 IIAGADS--------FGAELKDALVSHLRSLNIDVEDLGTSD-YYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIF 85 (309)
Q Consensus 15 I~ig~D~--------~g~~lk~~l~~~l~~~g~~v~d~g~~~-y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~ 85 (309)
++.++++ ...+..+.+++.|++.|++|++.+.-+ ..+-+.++++.... ..++--|+.+.|+--..+.
T Consensus 5 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vv~~~~~~~~~~~~~~~~~~~~~----~~~d~ii~~~~tf~~~~~~ 80 (452)
T cd00578 5 FVTGSQHLYGEELLEQVEEYAREVADLLNELPVEVVDKPEVTGTPDEARKAAEEFNE----ANCDGLIVWMHTFGPAKMW 80 (452)
T ss_pred EEEecccccChhHHHHHHHHHHHHHHHHhcCCceEEecCcccCCHHHHHHHHHHHhh----cCCcEEEEcccccccHHHH
Confidence 4566777 234668889999999999999999766 66667788888776 5677777777776554443
No 191
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=59.24 E-value=30 Score=34.68 Aligned_cols=64 Identities=17% Similarity=0.174 Sum_probs=46.0
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHh-----hcCCCCCCcceEEEEec
Q 021698 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRV-----SSSDSSETTTRGLVACG 77 (309)
Q Consensus 14 kI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va~~v-----~~~~~~~~~~~gi~~cg 77 (309)
.|+||.|. .+-.+|+.+.+-|.+.|++|.|+|.-.-|-+...+...- ...+.+....-||-+++
T Consensus 38 ~VvVG~D~R~~s~~l~~a~~~gL~~~Gv~V~~~g~~pTP~~~~a~~~~~~ggI~ITaSHnp~~~nGiK~~~ 108 (459)
T cd03088 38 TVAVGRDLRPSSPRIAAACAAALRDAGFRVVDCGAVPTPALALYAMKRGAPAIMVTGSHIPADRNGLKFYR 108 (459)
T ss_pred eEEEEeCCCcchHHHHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHcCCcEEEEeCCCCCCCCCCEEEEC
Confidence 59999996 667999999999999999999999776666555555431 11112344456777765
No 192
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=56.82 E-value=18 Score=30.44 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=33.7
Q ss_pred EEEEeCcccHHHHHHHHHHHHhCCCcEEEecC-----CCCcchhHHHHHHhhcCCCCCCcceEEEEecC
Q 021698 15 IIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRRVSSSDSSETTTRGLVACGT 78 (309)
Q Consensus 15 I~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~-----~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgt 78 (309)
+++.+ .+-.|++...+.++. +..++||-. .+|.+|..++++.-.+ .-.-.||.+||.
T Consensus 57 pIL~a--~~~~L~~l~~~a~~~-~i~~~~F~~~aq~~~~y~e~~~~~~~~~~~----~l~y~Gi~L~G~ 118 (133)
T PF09391_consen 57 PILKA--NSEQLRELRQKALER-EITVVDFTDEAQSTGHYEEYRAAVAATPEE----DLEYVGIALFGP 118 (133)
T ss_dssp EEEEE---HHHHHHHHHHHHHT-T---EEEEGGGGG---HHHHHHHHTT--TT----T--EEEEEEEEE
T ss_pred EEEEc--CHHHHHHHHHHHHHC-CCeEEeChHHHhhCCCHHHHHHHHhcCChh----hccEEEEEEECC
Confidence 55666 456676666666665 999999964 4788887777766544 444579999984
No 193
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=56.58 E-value=17 Score=36.32 Aligned_cols=67 Identities=18% Similarity=0.309 Sum_probs=45.8
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHH-----hhcCCCCCCcceEEEEecCch
Q 021698 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRR-----VSSSDSSETTTRGLVACGTGV 80 (309)
Q Consensus 14 kI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va~~-----v~~~~~~~~~~~gi~~cgtG~ 80 (309)
+|+||.|. .+-.+|+++.+-|.+.|++|.|+|.-.-|-+...+... +..++.+-....|+=++..|-
T Consensus 37 ~VvVg~D~R~~s~~l~~a~~~gL~s~G~~V~~lg~~pTP~~~~av~~~~~~Gi~iTaSHNP~~~nG~Ki~~~~~ 110 (445)
T PRK09542 37 TVVIGHDMRDSSPELAAAFAEGVTAQGLDVVRIGLASTDQLYFASGLLDCPGAMFTASHNPAAYNGIKLCRAGA 110 (445)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHCCCEEEEeCCCCCHHHHheecccCCCEEEEcCCCCCCccCcEEEecCCC
Confidence 69999997 78899999999999999999999976555544433221 111112334456777765543
No 194
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=55.59 E-value=23 Score=32.43 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=30.8
Q ss_pred CCcEEEEEeCcccHHH--HHHHHHHHHhCCCcEEEecCCCC
Q 021698 11 HPLKIIAGADSFGAEL--KDALVSHLRSLNIDVEDLGTSDY 49 (309)
Q Consensus 11 ~~mkI~ig~D~~g~~l--k~~l~~~l~~~g~~v~d~g~~~y 49 (309)
+.-||+||+=-.-.+= |+.+...|+..||+|+|+|.+--
T Consensus 103 k~g~vVigtveGDvHdIGk~iV~~ml~~aGfevidLG~dvP 143 (227)
T COG5012 103 KLGKVVIGTVEGDVHDIGKNIVATMLEAAGFEVIDLGRDVP 143 (227)
T ss_pred cCceEEEEeecccHHHHHHHHHHHHHHhCCcEEEecCCCCC
Confidence 3358999986654322 89999999999999999999743
No 195
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=55.26 E-value=42 Score=33.48 Aligned_cols=120 Identities=19% Similarity=0.206 Sum_probs=78.3
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCCCC-----------------cchhHHHHHHhhcCC---------
Q 021698 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDY-----------------YSIGAEVGRRVSSSD--------- 64 (309)
Q Consensus 11 ~~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~~y-----------------~~~a~~va~~v~~~~--------- 64 (309)
++.-|+||+-++|..+...|...+ . +++|+-+-..+| .+++..+-+.+....
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~-~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V 80 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-P-DVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEV 80 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-C-CCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEE
Confidence 344689999999999999999988 4 777776554321 122222222222100
Q ss_pred ------------CC-CCcceEEEEecCchhhhhhhcCCCceEEEEeCCHHHHHHHHhhcC---------------cceee
Q 021698 65 ------------SS-ETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINN---------------CNVLA 116 (309)
Q Consensus 65 ------------~~-~~~~~gi~~cgtG~G~~i~aNK~~giraa~~~~~~~A~~~r~hNn---------------aNvl~ 116 (309)
.+ ++.++=-|+.++|-.-+...++---=+|--..+..+|...|+|-. .+|..
T Consensus 81 ~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~I 160 (405)
T COG1252 81 TDIDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVI 160 (405)
T ss_pred EEEcccCCEEEeCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEE
Confidence 12 445667788888877666543322235666788999966665432 36999
Q ss_pred ecccccCHHHHHHHHH
Q 021698 117 VSGMSTSKESAVEILD 132 (309)
Q Consensus 117 ~g~~~~~~~~a~~i~~ 132 (309)
.|+..+|.|+|-++.+
T Consensus 161 vGgG~TGVElAgeL~~ 176 (405)
T COG1252 161 VGGGPTGVELAGELAE 176 (405)
T ss_pred ECCChhHHHHHHHHHH
Confidence 9999999999977654
No 196
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=53.98 E-value=36 Score=25.80 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=31.2
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCCC---------CcchhHHHHHHhhc
Q 021698 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSD---------YYSIGAEVGRRVSS 62 (309)
Q Consensus 13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~~---------y~~~a~~va~~v~~ 62 (309)
.+|-|-+=-.--.|=..+.+.|+.+||.+.+.|..+ |.+-....|+.|++
T Consensus 4 v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v~~~~n~~~~~~~t~I~y~~~~~~~A~~la~ 62 (90)
T PF13399_consen 4 VRVEVLNGTGVSGLAARVADALRNRGFTVVEVGNAPSSDETTTIYYGPGDEAAARELAA 62 (90)
T ss_pred eEEEEEECcCCcCHHHHHHHHHHHCCCceeecCCCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 344443333333455789999999999999998742 44433555555554
No 197
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=53.26 E-value=43 Score=34.78 Aligned_cols=44 Identities=18% Similarity=0.123 Sum_probs=36.1
Q ss_pred EEEEEeC--cccHHHHHHHHHHHHhCCCcEEEec-CCCCcchhHHHH
Q 021698 14 KIIAGAD--SFGAELKDALVSHLRSLNIDVEDLG-TSDYYSIGAEVG 57 (309)
Q Consensus 14 kI~ig~D--~~g~~lk~~l~~~l~~~g~~v~d~g-~~~y~~~a~~va 57 (309)
+|+||.| +.+-.+++.+..-|.+.|++|.++| .-.-|-++..+-
T Consensus 91 ~VvVg~D~R~~S~~fa~~~a~~L~a~Gi~V~~~g~~~pTP~lsfav~ 137 (584)
T PTZ00150 91 GVVIGYDGRYHSRRFAEITASVFLSKGFKVYLFGQTVPTPFVPYAVR 137 (584)
T ss_pred cEEEEeCCCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcHHHHHHHH
Confidence 6999999 5788999999999999999999998 445555555443
No 198
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=52.73 E-value=31 Score=35.43 Aligned_cols=38 Identities=32% Similarity=0.487 Sum_probs=33.3
Q ss_pred CCcEEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCC
Q 021698 11 HPLKIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSD 48 (309)
Q Consensus 11 ~~mkI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~~ 48 (309)
+.-+|+||+|- ++-.||+.+.+-|.+.|.+|.|+|.-.
T Consensus 101 ~~~~V~vg~D~R~ss~~l~~a~~~gl~~~G~~V~d~g~~~ 140 (513)
T cd03086 101 VPANVFVGRDTRPSGPALLQALLDGLKALGGNVIDYGLVT 140 (513)
T ss_pred CCCEEEEEeCCChhHHHHHHHHHHHHHHCCCeEEEccCcC
Confidence 34589999997 667999999999999999999999743
No 199
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P.
Probab=52.59 E-value=49 Score=34.03 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=35.3
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEe---cCCCCcchhHHH
Q 021698 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDL---GTSDYYSIGAEV 56 (309)
Q Consensus 14 kI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~---g~~~y~~~a~~v 56 (309)
+|+||.|. ++-.+++.+..-|.+.|++|+|+ |.-.-|-+...+
T Consensus 79 ~VvVG~D~R~sS~~~~~a~a~gL~s~Gi~V~~~~~~G~~pTP~~~~av 126 (543)
T TIGR01132 79 PLYIGKDTHALSEPAFISVLEVLAANGVEVIVQENNGFTPTPAVSHAI 126 (543)
T ss_pred cEEEEeCCCcCCHHHHHHHHHHHHHCCCEEEEeCCCCcCCchHHHHHH
Confidence 59999997 68899999999999999999996 555555555544
No 200
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=51.70 E-value=9.4 Score=27.58 Aligned_cols=15 Identities=40% Similarity=0.922 Sum_probs=12.0
Q ss_pred eEEEEecCchhhhhh
Q 021698 71 RGLVACGTGVGVAIF 85 (309)
Q Consensus 71 ~gi~~cgtG~G~~i~ 85 (309)
+.+++|++|+|.+..
T Consensus 1 ~il~vc~~G~~~s~~ 15 (84)
T cd00133 1 KILVVCGSGIGSSSM 15 (84)
T ss_pred CEEEECCCcHhHHHH
Confidence 357999999998764
No 201
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=51.13 E-value=66 Score=23.72 Aligned_cols=66 Identities=24% Similarity=0.227 Sum_probs=35.9
Q ss_pred EEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCC----eEEEecCCcEEEECC---CCc--EEEEEcCCeEEE
Q 021698 217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG----ERFDLTVGDYLFTPA---GDV--HRVKYYEETEFF 282 (309)
Q Consensus 217 ~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~----~~~~L~pGd~i~iP~---g~~--H~~~n~~d~~~~ 282 (309)
...+++|...-..-.+...+.++++|.+.+.....+ ....+.+|+++-... +.+ ....+.+++.++
T Consensus 19 ~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~ 93 (115)
T cd00038 19 ERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPRSATVRALTDSELL 93 (115)
T ss_pred eeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCCCceEEEcCceEEE
Confidence 345666665532223345677899999998422221 235667888765532 122 234444555554
No 202
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=50.72 E-value=1.4e+02 Score=25.73 Aligned_cols=70 Identities=17% Similarity=0.102 Sum_probs=41.2
Q ss_pred EEEEcCCCcCCccccCccEEEEEEeCEEEEEEEe-CCeE---EEecCCcEEEEC----CCCcE--EEEEcCCeEEEEEEc
Q 021698 217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLT-KGER---FDLTVGDYLFTP----AGDVH--RVKYYEETEFFIKWD 286 (309)
Q Consensus 217 ~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~-~~~~---~~L~pGd~i~iP----~g~~H--~~~n~~d~~~~i~~~ 286 (309)
...+++|...-..-.+...+.+|++|.+++.... +++. ..+.|||++-.. ...++ .+.+.+++.++.+..
T Consensus 22 ~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~~i~~ 101 (211)
T PRK11753 22 IHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISY 101 (211)
T ss_pred EEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEEEEcH
Confidence 4566777665433334557788999999984222 2332 467899987332 22233 456666777654433
No 203
>PRK14821 putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional
Probab=49.80 E-value=23 Score=31.34 Aligned_cols=74 Identities=20% Similarity=0.269 Sum_probs=50.8
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC-------CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhh
Q 021698 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-------SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIF 85 (309)
Q Consensus 13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~-------~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~ 85 (309)
|||++++-..+ --+++++.|.+.|++|..+.. .+|.+.|..=|+.+.+ ....-++..-||+=+. +
T Consensus 1 m~i~~aT~N~~--K~~E~~~il~~~~i~v~~~~~~~~E~~~~t~~enA~~KA~~~~~-----~~~~pvlaDDSGL~v~-a 72 (184)
T PRK14821 1 MKIYFATGNKG--KVEEAKIILKPLGIEVEQIKIEYPEIQADTLEEVAAFGAKWVYN-----KLNRPVIVEDSGLFIE-A 72 (184)
T ss_pred CEEEEECCChh--HHHHHHHHHhhcCcEEEECCCCCCCCCCCCHHHHHHHHHHHHHH-----HHCCCEEEEcCEEeeh-h
Confidence 68888876644 235677778777888877653 2466666666666654 2234689999987654 5
Q ss_pred hcCCCceEE
Q 021698 86 ANKNPGVFA 94 (309)
Q Consensus 86 aNK~~gira 94 (309)
.|-+|||+.
T Consensus 73 L~g~PGvys 81 (184)
T PRK14821 73 LNGFPGPYS 81 (184)
T ss_pred hCCCCcHHH
Confidence 699999965
No 204
>PLN02371 phosphoglucosamine mutase family protein
Probab=49.51 E-value=53 Score=34.19 Aligned_cols=44 Identities=27% Similarity=0.366 Sum_probs=36.7
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHH
Q 021698 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVG 57 (309)
Q Consensus 14 kI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va 57 (309)
+|+||.|. .+-.|++.+..-|.+.|++|+|+|.-.-|-+...+-
T Consensus 117 ~VvVG~D~R~sS~~l~~a~a~gL~s~Gi~V~~~g~~pTP~~~~av~ 162 (583)
T PLN02371 117 RVSVGRDPRISGPRLADAVFAGLASAGLDVVDMGLATTPAMFMSTL 162 (583)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHCCCEEEEecccCchHHHHHHH
Confidence 79999995 677999999999999999999999766665555443
No 205
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=49.08 E-value=48 Score=28.75 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=51.2
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCC--CcEEEecCCCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCC
Q 021698 13 LKIIAGADSFGAELKDALVSHLRSLN--IDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNP 90 (309)
Q Consensus 13 mkI~ig~D~~g~~lk~~l~~~l~~~g--~~v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~ 90 (309)
.-|+.|||. -++.-+.-.+.|++.| ||+.=...+--|+.-...++.-.+ ...-++|-|.|- |+-.|
T Consensus 5 V~IIMGS~S-D~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~------~g~~viIAgAGg-----AAHLP 72 (162)
T COG0041 5 VGIIMGSKS-DWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEE------RGVKVIIAGAGG-----AAHLP 72 (162)
T ss_pred EEEEecCcc-hHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHH------CCCeEEEecCcc-----hhhcc
Confidence 458889987 5566666778899998 566666777778876777765443 234458888873 67788
Q ss_pred ceEEEEe
Q 021698 91 GVFATTC 97 (309)
Q Consensus 91 giraa~~ 97 (309)
|+.|+..
T Consensus 73 GmvAa~T 79 (162)
T COG0041 73 GMVAAKT 79 (162)
T ss_pred hhhhhcC
Confidence 8877764
No 206
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=48.53 E-value=1e+02 Score=27.25 Aligned_cols=73 Identities=10% Similarity=-0.022 Sum_probs=42.9
Q ss_pred EEEcCCCcCCccccCccEEEEEEeCEEEEEEEe-CCeE---EEecCCcEEEECC-----CCcEEEEEcCCeEEEEEEcCC
Q 021698 218 VRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLT-KGER---FDLTVGDYLFTPA-----GDVHRVKYYEETEFFIKWDGR 288 (309)
Q Consensus 218 v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~-~~~~---~~L~pGd~i~iP~-----g~~H~~~n~~d~~~~i~~~g~ 288 (309)
.++++|...-..--+...+.+|++|.+++.... +|+. ..+.|||++-... ..++.+.+.+++.++.+....
T Consensus 34 ~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~~i~~i~~~~ 113 (226)
T PRK10402 34 FHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEECWCLALPMKD 113 (226)
T ss_pred eeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEeccEEEEEEEHHH
Confidence 456666655333334556788999999985222 3333 4577999765432 233456677777766554444
Q ss_pred cc
Q 021698 289 WD 290 (309)
Q Consensus 289 ~~ 290 (309)
+.
T Consensus 114 ~~ 115 (226)
T PRK10402 114 CR 115 (226)
T ss_pred HH
Confidence 43
No 207
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=48.18 E-value=89 Score=27.89 Aligned_cols=70 Identities=19% Similarity=0.133 Sum_probs=43.3
Q ss_pred EEEEcCCCcCCccccCccEEEEEEeCEEEEEEEe-CCeE---EEecCCcEEEECCCCcEE--EEEcCCeEEEEEEc
Q 021698 217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLT-KGER---FDLTVGDYLFTPAGDVHR--VKYYEETEFFIKWD 286 (309)
Q Consensus 217 ~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~-~~~~---~~L~pGd~i~iP~g~~H~--~~n~~d~~~~i~~~ 286 (309)
...+++|...-..-.+...+.+|++|.+.+.... +|+. ..+.|||++=...+.++. ....+++.++.+..
T Consensus 40 ~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~~i~~ 115 (230)
T PRK09391 40 EFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVRLIKR 115 (230)
T ss_pred eEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCceEEEEEEH
Confidence 4567777766444445567778999999985222 3332 345799987766665543 44555666554433
No 208
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.00 E-value=25 Score=25.31 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=25.7
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEE
Q 021698 13 LKIIAGADSFGAELKDALVSHLRSLNIDVED 43 (309)
Q Consensus 13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d 43 (309)
-.|-++-+-.+-+-.+.|++.|++.||++.|
T Consensus 38 ~~v~v~ie~~~~~~~~~i~~~L~~~G~~~~d 68 (68)
T cd04885 38 ARVLVGIQVPDREDLAELKERLEALGYPYVD 68 (68)
T ss_pred eEEEEEEEeCCHHHHHHHHHHHHHcCCCccC
Confidence 3566776777778889999999999999876
No 209
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=47.63 E-value=91 Score=28.42 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=44.8
Q ss_pred CCCcCCccccCccEEEEEEeCEEEEEEEeCC--eEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEcC
Q 021698 222 AGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG--ERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDG 287 (309)
Q Consensus 222 pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~--~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~g 287 (309)
-|+.--.-+|..+....||+|+..-+ .++ +....+|||..+.|.|....++-..++=++-...|
T Consensus 108 vgTeGhsGrh~ad~y~tIL~G~~~~~--~~g~~~~evy~pGd~~~l~rg~a~~y~m~~~tw~LEY~RG 173 (216)
T PF04622_consen 108 VGTEGHSGRHWADDYFTILSGEQWAW--SPGSLEPEVYKPGDSHHLPRGEAKQYQMPPGTWALEYGRG 173 (216)
T ss_pred CCCCCCCcceEeeeEEEEEEEEEEEE--cCCCCCceEeccCCEEEecCceEEEEEeCCCeEEEEecCC
Confidence 34433334555667788999998874 333 44788899999999999999988776655433333
No 210
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=47.23 E-value=50 Score=37.45 Aligned_cols=74 Identities=20% Similarity=0.114 Sum_probs=47.0
Q ss_pred CcEEEEEeCcccH-HH-HHHHHHHHHhCCCcEEEecCCC-------------------------CcchhHHHHHHhhcCC
Q 021698 12 PLKIIAGADSFGA-EL-KDALVSHLRSLNIDVEDLGTSD-------------------------YYSIGAEVGRRVSSSD 64 (309)
Q Consensus 12 ~mkI~ig~D~~g~-~l-k~~l~~~l~~~g~~v~d~g~~~-------------------------y~~~a~~va~~v~~~~ 64 (309)
+-||++|+=..-. ++ |+.+.-.|+..||+|+|+|.+- ..+....+.+.+.+
T Consensus 732 ~gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~~diVgLS~Lmt~t~~~m~~vi~~L~~-- 809 (1178)
T TIGR02082 732 KGKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDHNADVIGLSGLITPSLDEMKEVAEEMNR-- 809 (1178)
T ss_pred CCeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhCCCEEEEcCcccccHHHHHHHHHHHHh--
Confidence 3489998644332 34 6888888999999999999851 12234555666655
Q ss_pred CCCCcceEEEEecCchhhhhhhcCC
Q 021698 65 SSETTTRGLVACGTGVGVAIFANKN 89 (309)
Q Consensus 65 ~~~~~~~gi~~cgtG~G~~i~aNK~ 89 (309)
...+.=|+++|..+--.-+++|+
T Consensus 810 --~g~~v~v~vGGa~~s~~~~~~~i 832 (1178)
T TIGR02082 810 --RGITIPLLIGGAATSKTHTAVKI 832 (1178)
T ss_pred --cCCCceEEEeccccchhHHHhhh
Confidence 22245567777665555555543
No 211
>PRK14824 putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional
Probab=46.78 E-value=41 Score=30.21 Aligned_cols=76 Identities=18% Similarity=0.241 Sum_probs=48.9
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC--------CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhh
Q 021698 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT--------SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAI 84 (309)
Q Consensus 13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~--------~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i 84 (309)
|||++++-..+ --+++++.|...|++|+.+.. .+|.+.|..=|+.+.+ ....-++.+-||+=+.
T Consensus 1 m~i~~aT~N~~--K~~E~~~iL~~~~i~v~~~~~~~e~~E~~~tf~eNA~~KA~~~~~-----~~~~pviaDDSGL~vd- 72 (201)
T PRK14824 1 MKILLATTNEG--KVREIKRLLSDLGIEVLSPDKKIEVEEDGETFLENAYLKARAYAE-----FYKIPVLADDSGLEVP- 72 (201)
T ss_pred CEEEEECCChH--HHHHHHHHHhhcCCEEEEcCcCCCCCCCCCCHHHHHHHHHHHHHH-----HHCCCEEEeccEEEec-
Confidence 67887765533 235677777777888876641 1466666666666554 1223478899986443
Q ss_pred hhcCCCceEEEE
Q 021698 85 FANKNPGVFATT 96 (309)
Q Consensus 85 ~aNK~~giraa~ 96 (309)
+.|.+|||+.+.
T Consensus 73 AL~G~PGvysar 84 (201)
T PRK14824 73 ALEGYPGVYSSR 84 (201)
T ss_pred ccCCCCceeeHH
Confidence 459999997654
No 212
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=46.54 E-value=27 Score=36.51 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=27.4
Q ss_pred CCCcEEEEEeCcc---cHHHHHHHHHHHHhCCCcEE
Q 021698 10 PHPLKIIAGADSF---GAELKDALVSHLRSLNIDVE 42 (309)
Q Consensus 10 ~~~mkI~ig~D~~---g~~lk~~l~~~l~~~g~~v~ 42 (309)
.|+|||.+.|+.. ..=+|+++++.|+++|++++
T Consensus 504 ~k~mKILvaCGsGiGTStmva~kIkk~Lke~GI~ve 539 (602)
T PRK09548 504 GKPVRILAVCGQGQGSSMMMKMKIKKYLDKRGIPII 539 (602)
T ss_pred CcccEEEEECCCCchHHHHHHHHHHHHHHHcCCCeE
Confidence 4789999999983 23679999999999999753
No 213
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.03 E-value=52 Score=30.12 Aligned_cols=57 Identities=11% Similarity=0.087 Sum_probs=40.3
Q ss_pred EEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC---CC-------CcchhHHHHHHhhcCCCCCCcceEEEEe
Q 021698 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT---SD-------YYSIGAEVGRRVSSSDSSETTTRGLVAC 76 (309)
Q Consensus 14 kI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~---~~-------y~~~a~~va~~v~~~~~~~~~~~gi~~c 76 (309)
||.+..-. =-++.+..++||++.|+||+|+-. .| -|-...+.|+.+.. +.+| ||+|.
T Consensus 120 ri~vlTPY-~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~----~~~D-aiFiS 186 (238)
T COG3473 120 RISVLTPY-IDEVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVFT----PDAD-AIFIS 186 (238)
T ss_pred eEEEeccc-hhhhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhcC----CCCC-eEEEE
Confidence 56665543 357788899999999999999843 22 34466889999887 5554 45543
No 214
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=45.82 E-value=34 Score=29.65 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=46.4
Q ss_pred EEEEeCcccHHHHHHHHHHHHhCCCc--EEEecCCCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCCce
Q 021698 15 IIAGADSFGAELKDALVSHLRSLNID--VEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGV 92 (309)
Q Consensus 15 I~ig~D~~g~~lk~~l~~~l~~~g~~--v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~gi 92 (309)
|+.||+. -.+.-++..+.|++.|++ +-=.+.+-.|+--.+..+...+ . ..-++|++.|. +|-.||+
T Consensus 3 IimGS~S-D~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~----~--g~~viIa~AG~-----aa~Lpgv 70 (156)
T TIGR01162 3 IIMGSDS-DLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEE----R--GIKVIIAGAGG-----AAHLPGM 70 (156)
T ss_pred EEECcHh-hHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHH----C--CCeEEEEeCCc-----cchhHHH
Confidence 5666665 566678888999999966 3333445566665666665443 1 24678888874 6666777
Q ss_pred EEEEeC
Q 021698 93 FATTCL 98 (309)
Q Consensus 93 raa~~~ 98 (309)
.|+++.
T Consensus 71 va~~t~ 76 (156)
T TIGR01162 71 VAALTP 76 (156)
T ss_pred HHhccC
Confidence 666553
No 215
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=45.73 E-value=26 Score=31.23 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=25.0
Q ss_pred cEEEEEeCcccH--HHHHHHHHHHHhCCCcEEEecC
Q 021698 13 LKIIAGADSFGA--ELKDALVSHLRSLNIDVEDLGT 46 (309)
Q Consensus 13 mkI~ig~D~~g~--~lk~~l~~~l~~~g~~v~d~g~ 46 (309)
|||.|.+|. |+ +--..|.+.|++.|++|.=+.+
T Consensus 1 M~ILlTNDD-Gi~a~Gi~aL~~~L~~~g~~V~VvAP 35 (196)
T PF01975_consen 1 MRILLTNDD-GIDAPGIRALAKALSALGHDVVVVAP 35 (196)
T ss_dssp SEEEEE-SS--TTSHHHHHHHHHHTTTSSEEEEEEE
T ss_pred CeEEEEcCC-CCCCHHHHHHHHHHHhcCCeEEEEeC
Confidence 899999998 44 3457888889888999996654
No 216
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=45.43 E-value=1.2e+02 Score=25.85 Aligned_cols=67 Identities=13% Similarity=0.098 Sum_probs=38.2
Q ss_pred EEEcCCCcCCcccc--CccEEEEEEeCEEEEEEEe-CCeE---EEecCCcEEEECC----CCcEEEEEcCCeEEEEE
Q 021698 218 VRFKAGSVEPAHHH--TFGHDLVVLEGKKSVWNLT-KGER---FDLTVGDYLFTPA----GDVHRVKYYEETEFFIK 284 (309)
Q Consensus 218 v~l~pG~~~p~H~H--~~~e~vyVl~G~l~v~~~~-~~~~---~~L~pGd~i~iP~----g~~H~~~n~~d~~~~i~ 284 (309)
.++++|...-..-- +...+.+|++|.+++.... +|+. ..+.|||++=.++ ..++...+.+++.++.+
T Consensus 9 ~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~~~~~~~~~~A~~~~~v~~i 85 (202)
T PRK13918 9 VTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALAGAERAYFAEAVTDSRIDVL 85 (202)
T ss_pred eEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhcCCCCCceEEEcCceEEEEE
Confidence 45666665533222 2356778999999984222 3333 4568999764432 12344556667666544
No 217
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=44.54 E-value=74 Score=24.15 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=35.6
Q ss_pred EEEEcCCCcCCccccC---cc-EEEEE--Ee--------CEEEEEEEeC------CeEEE-----ecCCcEEEECC-CCc
Q 021698 217 IVRFKAGSVEPAHHHT---FG-HDLVV--LE--------GKKSVWNLTK------GERFD-----LTVGDYLFTPA-GDV 270 (309)
Q Consensus 217 ~v~l~pG~~~p~H~H~---~~-e~vyV--l~--------G~l~v~~~~~------~~~~~-----L~pGd~i~iP~-g~~ 270 (309)
+.+..+|....+|... .. .+.++ |. |++++ ... .+... ..+|+.+++++ ...
T Consensus 3 ~~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~--~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~~~~~ 80 (100)
T PF13640_consen 3 LNRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEF--YPSKDSDDVSREVEDFDIVPKPGRLVIFPSDNSL 80 (100)
T ss_dssp EEEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEE--TTTS-TSSTCEEEGGGSEE-BTTEEEEEESCTCE
T ss_pred EEEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEE--eccccCCCcceEEEeccccCCCCEEEEEeCCCCe
Confidence 3456778888888766 22 22222 44 56666 321 12223 78999999999 999
Q ss_pred EEEEEc
Q 021698 271 HRVKYY 276 (309)
Q Consensus 271 H~~~n~ 276 (309)
|++.-.
T Consensus 81 H~v~~v 86 (100)
T PF13640_consen 81 HGVTPV 86 (100)
T ss_dssp EEEEEE
T ss_pred ecCccc
Confidence 999777
No 218
>PRK00120 dITP/XTP pyrophosphatase; Reviewed
Probab=44.22 E-value=30 Score=30.87 Aligned_cols=74 Identities=22% Similarity=0.314 Sum_probs=47.8
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEe---cC-------CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhh
Q 021698 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDL---GT-------SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGV 82 (309)
Q Consensus 13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~---g~-------~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~ 82 (309)
|||++++-..+ --+++++.|...|++|+-+ +. .+|.+.|..=|+.+.+ ....-++.+-||+=+
T Consensus 1 m~i~~aT~N~~--K~~E~~~il~~~~~~i~~~~~~~~~e~~E~~~s~~enA~~KA~~~~~-----~~~~pviaDDSGL~i 73 (196)
T PRK00120 1 MKIVLASHNAG--KLRELKALLAPFGIEVVSQGELGVPEPEETGTTFVENALIKARHAAK-----ATGLPALADDSGLCV 73 (196)
T ss_pred CEEEEEcCCHH--HHHHHHHHHhhcCCEEEehhhcCCCCCCCCCCCHHHHHHHHHHHHHH-----HHCCCEEEEcCEEEE
Confidence 67888775543 2356777787777777633 22 1466666666666654 223458999998654
Q ss_pred hhhhcCCCceEE
Q 021698 83 AIFANKNPGVFA 94 (309)
Q Consensus 83 ~i~aNK~~gira 94 (309)
. +.|.+|||+.
T Consensus 74 ~-aL~g~PGvys 84 (196)
T PRK00120 74 D-ALGGAPGVYS 84 (196)
T ss_pred c-ccCCCCchhh
Confidence 4 5799999854
No 219
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=44.22 E-value=79 Score=27.32 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=24.1
Q ss_pred CCeEEEecCCcEEEECCCCcEEEEEcCC
Q 021698 251 KGERFDLTVGDYLFTPAGDVHRVKYYEE 278 (309)
Q Consensus 251 ~~~~~~L~pGd~i~iP~g~~H~~~n~~d 278 (309)
+..+..|.||+++.+=||.+|+..+..+
T Consensus 110 ~e~~v~L~~G~faiFfP~e~H~P~c~~~ 137 (154)
T COG2731 110 DESTVELNPGMFAIFFPGEPHRPGCNVG 137 (154)
T ss_pred cceEEEeCCCCEEEECCCCccccccccC
Confidence 4567889999999999999999877764
No 220
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=43.94 E-value=97 Score=30.71 Aligned_cols=35 Identities=20% Similarity=0.159 Sum_probs=27.0
Q ss_pred CCCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC
Q 021698 10 PHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT 46 (309)
Q Consensus 10 ~~~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~ 46 (309)
.+++||++-+-|..- ...+.+.|++.|.+|+-+..
T Consensus 162 ~~~lkIvid~~~G~~--~~~~~~~l~~lg~~v~~~~~ 196 (439)
T cd03087 162 GKGLKVVVDCGNGAG--SLTTPYLLRELGCKVITLNA 196 (439)
T ss_pred CCCCEEEEECCCCch--HHHHHHHHHHcCCEEEEECC
Confidence 357899999888655 36777788889999987754
No 221
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=43.83 E-value=76 Score=29.14 Aligned_cols=80 Identities=11% Similarity=0.036 Sum_probs=48.6
Q ss_pred hhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCCce-EEEEeCCHHHHHHHHhhcCcceeeeccc-------ccC
Q 021698 52 IGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGV-FATTCLTPADALNTRSINNCNVLAVSGM-------STS 123 (309)
Q Consensus 52 ~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~gi-raa~~~~~~~A~~~r~hNnaNvl~~g~~-------~~~ 123 (309)
+|.+++..|.+ | + -|++. +|-=....|+-++.. .-.++++...|.....++|.|++.+||. ++|
T Consensus 83 IA~~Aa~~I~~----g--~-~Ifld-~GsT~~~la~~L~~~~ltVvTnsl~ia~~l~~~~~~~v~l~GG~~~~~~~~~~G 154 (251)
T PRK13509 83 IAKAASQLCNP----G--E-SVVIN-CGSTAFLLGRELCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLS 154 (251)
T ss_pred HHHHHHHhCCC----C--C-EEEEC-CcHHHHHHHHHhCCCCeEEEeCCHHHHHHHHhCCCCEEEEECCeEcCCcceeEC
Confidence 66666666654 2 2 34333 333333445444322 5666777888887788899999999998 467
Q ss_pred HHHHHHHHHHH-hcCCCCC
Q 021698 124 KESAVEILDTW-LKTPFKA 141 (309)
Q Consensus 124 ~~~a~~i~~~~-l~~~f~~ 141 (309)
+. + +.++.| ++.-|-+
T Consensus 155 ~~-~-~~l~~~~~d~aFig 171 (251)
T PRK13509 155 PQ-G-SENSLYAGHWMFTS 171 (251)
T ss_pred HH-H-HHHHhCcCCEEEEC
Confidence 75 5 566655 3444443
No 222
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=43.49 E-value=8.1 Score=30.77 Aligned_cols=49 Identities=20% Similarity=0.204 Sum_probs=31.0
Q ss_pred EEEEecCchhhhhhhcCCC------ceEEEEeCCHHHHHHHHhhcCcceeeecccc
Q 021698 72 GLVACGTGVGVAIFANKNP------GVFATTCLTPADALNTRSINNCNVLAVSGMS 121 (309)
Q Consensus 72 gi~~cgtG~G~~i~aNK~~------giraa~~~~~~~A~~~r~hNnaNvl~~g~~~ 121 (309)
-+++||+|.=.+|++||++ |+-+- +.-...+......++..++.+|..+
T Consensus 3 Ill~C~~GaSSs~la~km~~~a~~~gi~~~-i~a~~~~e~~~~~~~~Dvill~PQv 57 (99)
T cd05565 3 VLVLCAGGGTSGLLANALNKGAKERGVPLE-AAAGAYGSHYDMIPDYDLVILAPQM 57 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEE-EEEeeHHHHHHhccCCCEEEEcChH
Confidence 4799999999999999974 44221 1111122233345677788877764
No 223
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=43.39 E-value=1e+02 Score=30.31 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=28.8
Q ss_pred CCCcccCCCCCCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCCCC
Q 021698 1 MAENADAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDY 49 (309)
Q Consensus 1 ~~~~~~~~~~~~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~~y 49 (309)
|++.+... .++.-|+||.-++|..+- +.|...+++|+=+..++|
T Consensus 1 ~~~~~~~~-~~~~vVIvGgG~aGl~~a----~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 1 MRSRTARL-KKPNVVVLGTGWAGAYFV----RNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCcccCC-CCCeEEEECCCHHHHHHH----HHhCcCCCeEEEEcCCCC
Confidence 56654333 333358999999998763 344455788887777654
No 224
>COG3150 Predicted esterase [General function prediction only]
Probab=42.91 E-value=33 Score=30.39 Aligned_cols=68 Identities=13% Similarity=0.034 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhCCCcEEEecC--CCCcchh-HHHHHHhhcCCCCCCcceEEEEecCchhhhhh--hcCCCceEEEEe
Q 021698 25 ELKDALVSHLRSLNIDVEDLGT--SDYYSIG-AEVGRRVSSSDSSETTTRGLVACGTGVGVAIF--ANKNPGVFATTC 97 (309)
Q Consensus 25 ~lk~~l~~~l~~~g~~v~d~g~--~~y~~~a-~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~--aNK~~giraa~~ 97 (309)
.-|..+++++.+.+-.+.=.-+ ..||..+ ..+=+.|.+ ..++-++|||+|.|=.-+ .+-.-|||+++.
T Consensus 15 hka~l~~q~~~~~~~~i~y~~p~l~h~p~~a~~ele~~i~~-----~~~~~p~ivGssLGGY~At~l~~~~Girav~~ 87 (191)
T COG3150 15 HKAVLLLQFIDEDVRDIEYSTPHLPHDPQQALKELEKAVQE-----LGDESPLIVGSSLGGYYATWLGFLCGIRAVVF 87 (191)
T ss_pred HHHHHHHHHHhccccceeeecCCCCCCHHHHHHHHHHHHHH-----cCCCCceEEeecchHHHHHHHHHHhCChhhhc
Confidence 3456667777665433322222 2466544 555555655 334449999999995433 344556666654
No 225
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=42.31 E-value=1.6e+02 Score=22.72 Aligned_cols=63 Identities=22% Similarity=0.222 Sum_probs=40.3
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC---CC-------c--chhHHHHHHhhcCCCCCCcceEEEEecC
Q 021698 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS---DY-------Y--SIGAEVGRRVSSSDSSETTTRGLVACGT 78 (309)
Q Consensus 11 ~~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~---~y-------~--~~a~~va~~v~~~~~~~~~~~gi~~cgt 78 (309)
+.+||++-+-|..-. ..+.+.|+..|.+++-+... +| | ..-..+.+.+.+ ..+++|+.+.|-
T Consensus 20 ~~~kivvD~~~G~~~--~~~~~ll~~lg~~~~~~n~~~d~~f~~~~~p~p~~~~l~~~~~~v~~----~~ad~g~~~DgD 93 (104)
T PF02879_consen 20 SGLKIVVDCMNGAGS--DILPRLLERLGCDVIELNCDPDPDFPNQHAPNPEEESLQRLIKIVRE----SGADLGIAFDGD 93 (104)
T ss_dssp TTCEEEEE-TTSTTH--HHHHHHHHHTTCEEEEESSS-STTGTTTSTSSTSTTTTHHHHHHHHH----STTSEEEEE-TT
T ss_pred CCCEEEEECCCCHHH--HHHHHHHHHcCCcEEEEecccccccccccccccccchhHHHHHHhhc----cCceEEEEECCc
Confidence 457999999986554 34666688899988876542 12 1 245677777776 556777777665
Q ss_pred c
Q 021698 79 G 79 (309)
Q Consensus 79 G 79 (309)
|
T Consensus 94 a 94 (104)
T PF02879_consen 94 A 94 (104)
T ss_dssp S
T ss_pred C
Confidence 5
No 226
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=41.80 E-value=36 Score=32.72 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=42.8
Q ss_pred EEEEeCcccH-----HHHHHHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhh
Q 021698 15 IIAGADSFGA-----ELKDALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGV 82 (309)
Q Consensus 15 I~ig~D~~g~-----~lk~~l~~~l~~~g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~ 82 (309)
|++.+|.... .--..|++.|++.|+++.+.+. +|...+...+.+.+.+ .++.-|.-.|||.|-
T Consensus 160 Iltvsde~~~G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~-----~~DlIITTGGtg~g~ 229 (312)
T PRK03604 160 VLVLSDSIAAGTKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAE-----GYALIITTGGTGLGP 229 (312)
T ss_pred EEEECCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhC-----CCCEEEECCCCCCCC
Confidence 7778885522 1234677889999999999885 5566666666555432 467777777777764
No 227
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=41.76 E-value=36 Score=29.50 Aligned_cols=80 Identities=18% Similarity=0.145 Sum_probs=48.9
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCCceEEEEeCCHHHHHHH
Q 021698 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNT 106 (309)
Q Consensus 29 ~l~~~l~~~g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~giraa~~~~~~~A~~~ 106 (309)
.|.+.|++.|++|..... ++...+...+.+.+. .+|.-|+-.|+|.| .+..+.+-.
T Consensus 23 ~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~------~~dlVIttGG~G~t----------------~~D~t~ea~ 80 (170)
T cd00885 23 FLAKELAELGIEVYRVTVVGDDEDRIAEALRRASE------RADLVITTGGLGPT----------------HDDLTREAV 80 (170)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh------CCCEEEECCCCCCC----------------CCChHHHHH
Confidence 566778899999988764 455556666655543 34544444444433 233333333
Q ss_pred HhhcCcceeeecccccCHHHHHHHHHHHhcC
Q 021698 107 RSINNCNVLAVSGMSTSKESAVEILDTWLKT 137 (309)
Q Consensus 107 r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~ 137 (309)
++ ++|..+.+.+.+.+.+++|+..
T Consensus 81 ~~-------~~~~~l~~~~e~~~~i~~~~~~ 104 (170)
T cd00885 81 AK-------AFGRPLVLDEEALERIEARFAR 104 (170)
T ss_pred HH-------HhCCCcccCHHHHHHHHHHHHh
Confidence 32 3567788888888888888763
No 228
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=41.66 E-value=40 Score=33.17 Aligned_cols=47 Identities=26% Similarity=0.379 Sum_probs=33.3
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchh
Q 021698 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVG 81 (309)
Q Consensus 29 ~l~~~l~~~g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G 81 (309)
.|...|++.|+++.+++. +|+..+...+.+.+. ++|.-|+..|+|.|
T Consensus 199 ~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~------~~DliittGG~s~g 247 (394)
T cd00887 199 MLAALLRELGAEVVDLGIVPDDPEALREALEEALE------EADVVITSGGVSVG 247 (394)
T ss_pred HHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhh------CCCEEEEeCCCCCC
Confidence 456667889999999986 456666666666543 36777777777766
No 229
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=41.57 E-value=1.1e+02 Score=28.33 Aligned_cols=61 Identities=13% Similarity=0.056 Sum_probs=37.6
Q ss_pred CCcEEEEEeCccc------HHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCcceEEEEecCchh
Q 021698 11 HPLKIIAGADSFG------AELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVG 81 (309)
Q Consensus 11 ~~mkI~ig~D~~g------~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G 81 (309)
+++||+|.+.... ..=-..+++.|++.||+|.=+..++. +.+.+.. ...|..+..|++..|
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~------~~~~~~~----~~~D~v~~~~~g~~~ 69 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGED------IAAQLKE----LGFDRVFNALHGRGG 69 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcc------hHHHhcc----CCCCEEEEecCCCCC
Confidence 4568998883322 23346889999999999977655421 2233333 456766666654444
No 230
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=41.40 E-value=70 Score=30.28 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=39.9
Q ss_pred EEEcCCC---cCCccccCc-cE-EEE--EEeCEEEEEEEe--CCeE--EEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698 218 VRFKAGS---VEPAHHHTF-GH-DLV--VLEGKKSVWNLT--KGER--FDLTVGDYLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 218 v~l~pG~---~~p~H~H~~-~e-~vy--Vl~G~l~v~~~~--~~~~--~~L~pGd~i~iP~g~~H~~~n~~d~~~~ 282 (309)
..+.||+ ..|+|.|+. .| .+| +-.+...+. .. -+++ ..++-+|.+.+|++..|+-..+++=.|+
T Consensus 180 tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h-~mG~pdETrh~~v~n~~aVisP~wsih~g~gt~~y~fi 254 (276)
T PRK00924 180 TELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFH-FMGEPQETRHIVVHNEQAVISPSWSIHSGVGTSNYTFI 254 (276)
T ss_pred EEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEe-cCCCccceeeEEEECCCEEECCCcceecCcCccccEEE
Confidence 3456775 459999984 33 333 333333331 11 2345 7899999999999999997555544443
No 231
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=40.03 E-value=1.1e+02 Score=30.48 Aligned_cols=72 Identities=19% Similarity=0.203 Sum_probs=45.9
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC---CCc--------chhHHHHHHhhcCCCCCCcceEEEEecCc
Q 021698 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS---DYY--------SIGAEVGRRVSSSDSSETTTRGLVACGTG 79 (309)
Q Consensus 11 ~~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~---~y~--------~~a~~va~~v~~~~~~~~~~~gi~~cgtG 79 (309)
+.+||++-+-|.... ..+.+.|++.|.+|+-+..+ .+| .....+.+.|.+ ..++.||.+.|.|
T Consensus 172 ~~~kivvd~~~G~~~--~~~~~il~~lg~~v~~~~~~~dg~F~~~~p~p~~~~l~~l~~~v~~----~~ad~Gia~D~Dg 245 (461)
T cd05800 172 AGLKVVVDPMYGAGA--GYLEELLRGAGVDVEEIRAERDPLFGGIPPEPIEKNLGELAEAVKE----GGADLGLATDGDA 245 (461)
T ss_pred CCceEEEeCCCCCcH--HHHHHHHHHcCCCEEEeeCCcCCCCCCCCCCCCHHHHHHHHHHHHh----cCCCEEEEECCCC
Confidence 578999988875442 35777788999999866432 121 244556777766 5566777777666
Q ss_pred hhhhhhhcC
Q 021698 80 VGVAIFANK 88 (309)
Q Consensus 80 ~G~~i~aNK 88 (309)
==+.++-++
T Consensus 246 DR~~vvd~~ 254 (461)
T cd05800 246 DRIGAVDEK 254 (461)
T ss_pred CeEEEEeCC
Confidence 555555443
No 232
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=39.18 E-value=1.5e+02 Score=26.05 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=57.8
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCCCCc--chhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCC
Q 021698 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYY--SIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNP 90 (309)
Q Consensus 13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~~y~--~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~ 90 (309)
|||.+..-. +--+.+.+.|++.|++|+.+=...+. +.... -..... ....-.++..|..|+..+.+...
T Consensus 2 ~~ilitr~~---~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~-~~~~~~-----~~~~d~iiftS~~av~~~~~~~~ 72 (249)
T PRK05928 2 MKILVTRPS---PKAEELVELLRELGFVALHFPLIEIEPGRQLPQ-LAAQLA-----ALGADWVIFTSKNAVEFLLSALK 72 (249)
T ss_pred CEEEEeCCH---HHHHHHHHHHHHcCCCEEEeccEEEecCCCcCh-HHHHhh-----CCCCCEEEEECHHHHHHHHHHHH
Confidence 677777543 23357788899999999988664321 11111 111121 12345567777778777766432
Q ss_pred -------ceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHH
Q 021698 91 -------GVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILD 132 (309)
Q Consensus 91 -------giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~ 132 (309)
.-....|--+.+|+..+++.-- +..++......+++..+.+
T Consensus 73 ~~~~~~~~~~~~~avG~~Ta~~l~~~G~~-~~~~~~~~~~~~l~~~l~~ 120 (249)
T PRK05928 73 KKKLKWPKNKKYAAIGEKTALALKKLGGK-VVFVPEDGESSELLLELPE 120 (249)
T ss_pred hcCcCCCCCCEEEEECHHHHHHHHHcCCC-ccccCCCCcChHHHHhChh
Confidence 1123444555566665554322 2224444444444444444
No 233
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=39.07 E-value=37 Score=32.88 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=24.6
Q ss_pred EEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698 255 FDLTVGDYLFTPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 255 ~~L~pGd~i~iP~g~~H~~~n~~d~~~~ 282 (309)
...+||+.+|+|.|=.|-+.|..++.++
T Consensus 265 c~q~pGEt~fVP~GWWHvVlNle~TIAi 292 (407)
T KOG2130|consen 265 CLQKPGETMFVPSGWWHVVLNLEPTIAI 292 (407)
T ss_pred eeecCCceEEecCCeEEEEeccCceeee
Confidence 5788999999999999999999877653
No 234
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=39.06 E-value=44 Score=33.29 Aligned_cols=48 Identities=23% Similarity=0.289 Sum_probs=38.3
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhh
Q 021698 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGV 82 (309)
Q Consensus 29 ~l~~~l~~~g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~ 82 (309)
.|...|++.|.+++++|. +|+..+...+.+++.+ +|.-|..-|+.+|-
T Consensus 207 ~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~------~DviItsGG~SvG~ 256 (404)
T COG0303 207 MLAALLERAGGEVVDLGIVPDDPEALREAIEKALSE------ADVIITSGGVSVGD 256 (404)
T ss_pred HHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhc------CCEEEEeCCccCcc
Confidence 467788999999999997 5677777777777653 78888888888874
No 235
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=38.71 E-value=74 Score=29.15 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=27.0
Q ss_pred CeEEEecCCcEEEECCCCcEEEEEcCC-e-EEEEEEcC
Q 021698 252 GERFDLTVGDYLFTPAGDVHRVKYYEE-T-EFFIKWDG 287 (309)
Q Consensus 252 ~~~~~L~pGd~i~iP~g~~H~~~n~~d-~-~~~i~~~g 287 (309)
...+.+++|+.+.+|+...|++.-+.. . -..+.|.-
T Consensus 140 ~~~Vkp~aG~~vlfps~~lH~v~pVt~G~R~~~~~Wi~ 177 (226)
T PRK05467 140 EHRVKLPAGDLVLYPSTSLHRVTPVTRGVRVASFFWIQ 177 (226)
T ss_pred cEEEecCCCeEEEECCCCceeeeeccCccEEEEEecHH
Confidence 467888999999999999999987653 3 33455543
No 236
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=38.14 E-value=57 Score=25.66 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=23.6
Q ss_pred CcEEEEEeCcc---cHHHHHHHHHHHHhCCCcE
Q 021698 12 PLKIIAGADSF---GAELKDALVSHLRSLNIDV 41 (309)
Q Consensus 12 ~mkI~ig~D~~---g~~lk~~l~~~l~~~g~~v 41 (309)
++||..+|-.. .+-+|++++++|+++|+++
T Consensus 1 ~~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~ 33 (93)
T COG3414 1 MIKILAACGNGVGSSTMIKMKVEEVLKELGIDV 33 (93)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHHcCCCc
Confidence 36888888663 3478999999999999953
No 237
>PRK07564 phosphoglucomutase; Validated
Probab=37.41 E-value=99 Score=31.81 Aligned_cols=43 Identities=12% Similarity=0.219 Sum_probs=35.0
Q ss_pred EEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEe---cCCCCcchhHHH
Q 021698 14 KIIAGADS--FGAELKDALVSHLRSLNIDVEDL---GTSDYYSIGAEV 56 (309)
Q Consensus 14 kI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~---g~~~y~~~a~~v 56 (309)
+|+||.|. ++-.+++.+..-|.+.|++|.++ |.-.-|-+...+
T Consensus 78 ~VvVG~D~R~~S~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~~av 125 (543)
T PRK07564 78 PLFVGGDTHALSEPAIQSALEVLAANGVGVVIVGRGGYTPTPAVSHAI 125 (543)
T ss_pred eEEEEecCCcCCHHHHHHHHHHHHHCCCEEEEeCCCCcCCchHHHHHH
Confidence 59999996 78899999999999999999966 555555544444
No 238
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=36.28 E-value=12 Score=40.31 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=23.1
Q ss_pred CCeEEEecCCcEEEECCCCcEEEEEcCCe
Q 021698 251 KGERFDLTVGDYLFTPAGDVHRVKYYEET 279 (309)
Q Consensus 251 ~~~~~~L~pGd~i~iP~g~~H~~~n~~d~ 279 (309)
..=++.-..||.|+||+|.||+++|.-.+
T Consensus 797 e~WtfvQ~LGdAVfIPAGaPHQVrNLkSC 825 (889)
T KOG1356|consen 797 EPWTFVQFLGDAVFIPAGAPHQVRNLKSC 825 (889)
T ss_pred CccchhhcccceEEecCCCcHHhhhhhhH
Confidence 34445556899999999999999998643
No 239
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=36.24 E-value=1.4e+02 Score=26.51 Aligned_cols=61 Identities=13% Similarity=0.219 Sum_probs=44.8
Q ss_pred EEEEEeCcccHHH-----------------HHHHHHHHHhCCCcEEEecC-CCCcchhHHHHHHhhcCCCCCCcceEEEE
Q 021698 14 KIIAGADSFGAEL-----------------KDALVSHLRSLNIDVEDLGT-SDYYSIGAEVGRRVSSSDSSETTTRGLVA 75 (309)
Q Consensus 14 kI~ig~D~~g~~l-----------------k~~l~~~l~~~g~~v~d~g~-~~y~~~a~~va~~v~~~~~~~~~~~gi~~ 75 (309)
..+||+|.+.-.| .+.++++++++|.+++-+-. +|+.|.-+++-..+.. ..+.-+++
T Consensus 23 ~~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~~KD~TD~e~Al~~~~~~-----~~~~i~i~ 97 (208)
T cd07995 23 DLIIAADGGANHLLDLGIVPDLIIGDFDSISPEVLEYYKSKGVEIIHFPDEKDFTDFEKALKLALER-----GADEIVIL 97 (208)
T ss_pred CEEEEEChHHHHHHHcCCCCCEEEecCcCCCHHHHHHHHhcCCeEEECCCCCCCCHHHHHHHHHHHc-----CCCEEEEE
Confidence 3678888876544 46788889999999999988 7899987776666554 33566666
Q ss_pred ecCc
Q 021698 76 CGTG 79 (309)
Q Consensus 76 cgtG 79 (309)
+++|
T Consensus 98 Ga~G 101 (208)
T cd07995 98 GATG 101 (208)
T ss_pred ccCC
Confidence 6677
No 240
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=35.69 E-value=43 Score=35.04 Aligned_cols=99 Identities=17% Similarity=0.216 Sum_probs=57.8
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhh----hhhcC-----CCceEEEEe
Q 021698 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVA----IFANK-----NPGVFATTC 97 (309)
Q Consensus 29 ~l~~~l~~~g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~----i~aNK-----~~giraa~~ 97 (309)
.|.+.|++.|+++++++. +++..+...+.+.+. .+|.-|+..|||.|-. -+..+ |+||..
T Consensus 217 ~l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~------~~D~iIttGG~s~g~~D~~~~~l~~~g~~~~~~v~~--- 287 (633)
T PRK14498 217 TLAAAVEEAGGEPVRYGIVPDDEEELEAALRKALK------ECDLVLLSGGTSAGAGDVTYRVIEELGEVLVHGVAI--- 287 (633)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh------cCCEEEECCCCcCCCcccHHHHHHhcCCEEEeeEee---
Confidence 466778899999999985 456666666666543 3677788878876521 11111 233321
Q ss_pred CCHHHHHHHHhhcCcceeeecccccCHHHHHH-HHHHHhcC
Q 021698 98 LTPADALNTRSINNCNVLAVSGMSTSKESAVE-ILDTWLKT 137 (309)
Q Consensus 98 ~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~-i~~~~l~~ 137 (309)
.+-.-.++-..++.=|++|+|.-.+...+.+ ++.-+|..
T Consensus 288 -~PG~~~~~g~~~~~~v~~LPG~p~aa~~~~~~~v~P~l~~ 327 (633)
T PRK14498 288 -KPGKPTILGVIGGKPVVGLPGYPVSALTIFEEFVAPLLRK 327 (633)
T ss_pred -cCCCCEEEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHH
Confidence 1111112222366779999998776655554 45555544
No 241
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=35.29 E-value=25 Score=34.51 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=17.6
Q ss_pred eEEEecCCcEEEECCCCcEEEEE
Q 021698 253 ERFDLTVGDYLFTPAGDVHRVKY 275 (309)
Q Consensus 253 ~~~~L~pGd~i~iP~g~~H~~~n 275 (309)
....|+||+.+|+|+|++|....
T Consensus 250 N~v~L~pGeaifl~a~~~HAYl~ 272 (373)
T PF01238_consen 250 NYVELQPGEAIFLPAGEPHAYLS 272 (373)
T ss_dssp EEEEE-TT-EEEEHTTHHEEEEE
T ss_pred EEEEecCCceEEecCCCcccccc
Confidence 34679999999999999998754
No 242
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=34.76 E-value=39 Score=30.48 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=22.6
Q ss_pred chhHHHHHHhhcCCCCCCcceEEEEecCch
Q 021698 51 SIGAEVGRRVSSSDSSETTTRGLVACGTGV 80 (309)
Q Consensus 51 ~~a~~va~~v~~~~~~~~~~~gi~~cgtG~ 80 (309)
..+..|++.|.+....+...+-+++||+|-
T Consensus 31 nAG~aVa~~i~~~~~~~~~~~v~vlcG~Gn 60 (203)
T COG0062 31 NAGLAVARAILREYPLGRARRVLVLCGPGN 60 (203)
T ss_pred HHHHHHHHHHHHHcCcccCCEEEEEECCCC
Confidence 377888888887544444677999999994
No 243
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=34.71 E-value=1.1e+02 Score=29.12 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=49.4
Q ss_pred CCcEEEEEeCcc-cHH---HHHHHHHHHHhCCCcEEEecCCC---CcchhHHHHHHhhcCCCCCC-----------c-ce
Q 021698 11 HPLKIIAGADSF-GAE---LKDALVSHLRSLNIDVEDLGTSD---YYSIGAEVGRRVSSSDSSET-----------T-TR 71 (309)
Q Consensus 11 ~~mkI~ig~D~~-g~~---lk~~l~~~l~~~g~~v~d~g~~~---y~~~a~~va~~v~~~~~~~~-----------~-~~ 71 (309)
+.-.|++|.|+. |.. =-+.|+++.++.|++|+-+-... -.-.+-.+=+.|.+ |. . -.
T Consensus 114 ~~~~iVvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISST~IR~~I~~----G~i~~A~~lLg~~y~~~ 189 (305)
T PRK05627 114 NAKHVVVGFDFRFGKKRAGDFELLKEAGKEFGFEVTIVPEVKEDGERVSSTAIRQALAE----GDLELANKLLGRPYSIS 189 (305)
T ss_pred CCCEEEECCCCCCCCCCCCCHHHHHHHHHHcCcEEEEeccEecCCCcCchHHHHHHHHc----CCHHHHHhhhcCCCceE
Confidence 334799999994 431 13667788888998876443211 11111222222222 22 2 36
Q ss_pred EEEEecCchhhhhh---hc------CC--CceEEEEeC
Q 021698 72 GLVACGTGVGVAIF---AN------KN--PGVFATTCL 98 (309)
Q Consensus 72 gi~~cgtG~G~~i~---aN------K~--~giraa~~~ 98 (309)
|.++.|-|.|-.|- || +. .|||++.+.
T Consensus 190 g~V~~G~~~Gr~lgfPTaNl~~~~~~~p~~GVY~~~~~ 227 (305)
T PRK05627 190 GRVVHGQKLGRTLGFPTANLPLPDRVLPADGVYAVRVK 227 (305)
T ss_pred EEEEECcccCccccceeEeecCccCCCCCceEEEEEEE
Confidence 99999999985443 33 22 599999884
No 244
>PRK14822 nucleoside-triphosphatase; Provisional
Probab=34.59 E-value=72 Score=28.58 Aligned_cols=76 Identities=16% Similarity=0.295 Sum_probs=48.9
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEec---C--------CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchh
Q 021698 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLG---T--------SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVG 81 (309)
Q Consensus 13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g---~--------~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G 81 (309)
|||++++-..+ --+++++.|.+.+++|+-+. . .+|-+.|..=|+.+.+ ....-++.+-||+=
T Consensus 2 ~~i~~aT~N~~--K~~E~~~iL~~~~~~i~~~~~~~~~~e~~E~g~t~~enA~~KA~~~~~-----~~~~pviaDDSGL~ 74 (200)
T PRK14822 2 KEIVIATKNKG--KVREFKEIFEKFDIEVKSLADFPPIPEVEETGTTFEENAILKAEAAAK-----ALNKPVIADDSGLE 74 (200)
T ss_pred CeEEEECCCHH--HHHHHHHHHhhcCcEEEEchhcCCCCCCCCCCCCHHHHHHHHHHHHHH-----HHCCCEEEeccEEE
Confidence 36888876543 23567777777788876333 1 1455566666666654 22345889999875
Q ss_pred hhhhhcCCCceEEEE
Q 021698 82 VAIFANKNPGVFATT 96 (309)
Q Consensus 82 ~~i~aNK~~giraa~ 96 (309)
+. +.|.+|||+.+.
T Consensus 75 v~-AL~G~PGvysar 88 (200)
T PRK14822 75 VD-ALNGAPGVYSAR 88 (200)
T ss_pred Ec-ccCCCCceechh
Confidence 54 569999998765
No 245
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=34.56 E-value=1.4e+02 Score=27.71 Aligned_cols=61 Identities=11% Similarity=0.164 Sum_probs=39.6
Q ss_pred EEEEeCcccHHHHHHHHHHHHhCCCcEEEecCCC--CcchhHHHHHHhhcCCCCCCcceEEEEecCchh
Q 021698 15 IIAGADSFGAELKDALVSHLRSLNIDVEDLGTSD--YYSIGAEVGRRVSSSDSSETTTRGLVACGTGVG 81 (309)
Q Consensus 15 I~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~~--y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G 81 (309)
|+..+|..|..+.+.+.+.|++.|.+|++.-... -.++...+.+. .+ .....|++|+++-.
T Consensus 146 ~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l-~~-----~~~d~i~~~~~~~~ 208 (345)
T cd06338 146 ILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKA-KA-----AGPDAVVVAGHFPD 208 (345)
T ss_pred EEecCCcccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHH-Hh-----cCCCEEEECCcchh
Confidence 3334455677899999999999999998743321 24555555544 33 22467888887744
No 246
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=34.45 E-value=3.8e+02 Score=24.77 Aligned_cols=65 Identities=6% Similarity=0.040 Sum_probs=41.2
Q ss_pred EEE-EEeCc--ccHHHHHHHHHHHHhCCCcEEEecCC--CCcchhHHHHHHhhcCCCCCCcceEEEEecCc-hhhhh
Q 021698 14 KII-AGADS--FGAELKDALVSHLRSLNIDVEDLGTS--DYYSIGAEVGRRVSSSDSSETTTRGLVACGTG-VGVAI 84 (309)
Q Consensus 14 kI~-ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~--~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG-~G~~i 84 (309)
||+ |.+|. .|..+.+.+++.+++.|.++...-.. +..++...+.+.... + ..+|++++.+ .++.+
T Consensus 134 ~~~~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~i~~~----~--pdaV~~~~~~~~a~~~ 204 (341)
T cd06341 134 RAVALVTALSAAVSAAAALLARSLAAAGVSVAGIVVITATAPDPTPQAQQAAAA----G--ADAIITVLDAAVCASV 204 (341)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHHcCCccccccccCCCCCCHHHHHHHHHhc----C--CCEEEEecChHHHHHH
Confidence 454 44443 57788999999999999998764332 245565555554433 2 3477777766 44444
No 247
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=34.39 E-value=62 Score=30.93 Aligned_cols=92 Identities=10% Similarity=0.068 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhC--CCcEEEecCCCC--cchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCCceEEEEeCCHH
Q 021698 26 LKDALVSHLRSL--NIDVEDLGTSDY--YSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPA 101 (309)
Q Consensus 26 lk~~l~~~l~~~--g~~v~d~g~~~y--~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~giraa~~~~~~ 101 (309)
.++.|++.+++. .|-.+=.|+..+ ..+|..+++.+.-. . .. ++--|..|.+..
T Consensus 14 ~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~----~-~~------------------~~~~cg~C~~c~ 70 (329)
T PRK08058 14 VVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCL----E-RN------------------GVEPCGTCTNCK 70 (329)
T ss_pred HHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCC----C-CC------------------CCCCCCcCHHHH
Confidence 344455555432 345556676655 34666666666531 1 00 111244444332
Q ss_pred HHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCC
Q 021698 102 DALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKA 141 (309)
Q Consensus 102 ~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~ 141 (309)
. .....|+|-|.+...+..++.+..+++++.+-.++|.+
T Consensus 71 ~-~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~ 109 (329)
T PRK08058 71 R-IDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVES 109 (329)
T ss_pred H-HhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCccc
Confidence 2 23456888888888888899999999999988888876
No 248
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=34.14 E-value=92 Score=26.59 Aligned_cols=108 Identities=13% Similarity=0.079 Sum_probs=58.6
Q ss_pred CcEEEEEe-CcccHHHH-HHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCC
Q 021698 12 PLKIIAGA-DSFGAELK-DALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKN 89 (309)
Q Consensus 12 ~mkI~ig~-D~~g~~lk-~~l~~~l~~~g~~v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~ 89 (309)
+-||.++. =..|-+.- +.+...|++.|+||++.|..+-|+=+ +..++.+ .--.|.+|++--|=--.
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~--v~aA~~~------dv~vIgvSsl~g~h~~l---- 79 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEA--VRAAVEE------DVDVIGVSSLDGGHLTL---- 79 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHH--HHHHHhc------CCCEEEEEeccchHHHH----
Confidence 34555541 12233333 34566789999999999997766422 2333443 34688889875332221
Q ss_pred CceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCC
Q 021698 90 PGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFK 140 (309)
Q Consensus 90 ~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~ 140 (309)
|.... +..|+---..++.+.+.++.++...+.-+.=+..=|.
T Consensus 80 -------~~~lv--e~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~ 121 (143)
T COG2185 80 -------VPGLV--EALREAGVEDILVVVGGVIPPGDYQELKEMGVDRIFG 121 (143)
T ss_pred -------HHHHH--HHHHHhCCcceEEeecCccCchhHHHHHHhCcceeeC
Confidence 11112 2333333334455777777777755554444444443
No 249
>PRK14823 putative deoxyribonucleoside-triphosphatase; Provisional
Probab=34.12 E-value=35 Score=30.33 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=46.1
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEE---ecC--------CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchh
Q 021698 13 LKIIAGADSFGAELKDALVSHLRSLNIDVED---LGT--------SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVG 81 (309)
Q Consensus 13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d---~g~--------~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G 81 (309)
|||++++-..+= -+++++.|.. +++|+. ++. .+|.+-|..=|+.+.+ ....-+|.+-||+=
T Consensus 1 mki~~aT~N~~K--~~E~~~il~~-~~~v~~~~~~~~~~~~~E~~~tf~enA~~KA~~~~~-----~~~~pvlaDDSGL~ 72 (191)
T PRK14823 1 MKLVFATNNKHK--LEEIRSILPE-KIELLSLSDIGCHEDIPETADTLEGNALLKAEYVYK-----KYGYDCFADDTGLE 72 (191)
T ss_pred CEEEEECCChhH--HHHHHHHhcC-CCEEEehhhcCCCCCCCCCCCCHHHHHHHHHHHHHH-----HHCCCEEEecCEEE
Confidence 688888766542 2456666654 677763 221 1466666666666654 22345899999865
Q ss_pred hhhhhcCCCceEE
Q 021698 82 VAIFANKNPGVFA 94 (309)
Q Consensus 82 ~~i~aNK~~gira 94 (309)
+. +.|-+|||+.
T Consensus 73 v~-aL~G~PGvys 84 (191)
T PRK14823 73 VE-ALNGAPGVYS 84 (191)
T ss_pred Ee-ccCCCcchHH
Confidence 44 5799999853
No 250
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=34.09 E-value=38 Score=29.47 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=28.2
Q ss_pred CcEEEEEeCcccH------HHHHHHHHHHHhCCCcEEE
Q 021698 12 PLKIIAGADSFGA------ELKDALVSHLRSLNIDVED 43 (309)
Q Consensus 12 ~mkI~ig~D~~g~------~lk~~l~~~l~~~g~~v~d 43 (309)
.|||++-+-|+|| ++-+++++.|+++|..|.-
T Consensus 51 ~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~ 88 (186)
T COG1751 51 DLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLT 88 (186)
T ss_pred CceEEEEEeecccccCCceecCHHHHHHHHHcCceeee
Confidence 3899999999999 4567899999999999984
No 251
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.01 E-value=61 Score=32.45 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=31.6
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC
Q 021698 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT 46 (309)
Q Consensus 13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~ 46 (309)
.||.|||.|.+-..-+.|+..|++.|++++-+.+
T Consensus 168 ~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~ 201 (429)
T PF10100_consen 168 KKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDN 201 (429)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCC
Confidence 4899999999999999999999999999998765
No 252
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=33.92 E-value=96 Score=28.85 Aligned_cols=81 Identities=11% Similarity=0.030 Sum_probs=49.9
Q ss_pred hhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCCce--EEEEeCCHHHHHHHHhhcCcceeeecccc-------c
Q 021698 52 IGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGV--FATTCLTPADALNTRSINNCNVLAVSGMS-------T 122 (309)
Q Consensus 52 ~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~gi--raa~~~~~~~A~~~r~hNnaNvl~~g~~~-------~ 122 (309)
+|.++++.|.+ | -.++=++|-=+...|.-++.. .-.++++...|.....++|.||+++||.+ +
T Consensus 96 IA~~Aa~~I~d----g----d~Ifld~GtT~~~la~~L~~~~~ltVvTnsl~ia~~l~~~~~~~v~llGG~~~~~~~~~~ 167 (269)
T PRK09802 96 VAKAAVELIQP----G----HRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFY 167 (269)
T ss_pred HHHHHHhhCCC----C----CEEEECCchHHHHHHHhcCcCCCeEEEeCCHHHHHHHHhCCCCEEEEECCEEecCCCceE
Confidence 55555555543 2 233344555555566666543 46677888888888888999999999985 4
Q ss_pred CHHHHHHHHHHH-hcCCCCC
Q 021698 123 SKESAVEILDTW-LKTPFKA 141 (309)
Q Consensus 123 ~~~~a~~i~~~~-l~~~f~~ 141 (309)
|+. +.+.++.| ++.-|-+
T Consensus 168 G~~-a~~~l~~~~~d~afig 186 (269)
T PRK09802 168 GDQ-AEQSLQNYHFDMLFLG 186 (269)
T ss_pred CHH-HHHHHHhccCCEEEEc
Confidence 544 44555544 4444443
No 253
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=33.73 E-value=1.9e+02 Score=25.59 Aligned_cols=77 Identities=12% Similarity=0.056 Sum_probs=43.2
Q ss_pred EEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeE---EEecCCcEEEEC-----CCCcEEEEEcCCeEEEEEEcCC
Q 021698 217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGER---FDLTVGDYLFTP-----AGDVHRVKYYEETEFFIKWDGR 288 (309)
Q Consensus 217 ~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~---~~L~pGd~i~iP-----~g~~H~~~n~~d~~~~i~~~g~ 288 (309)
...+++|...-.--.+...+.+|++|.+++....+++. ..+.+|+.+-.. .-..+.+.+.+++.++.+....
T Consensus 32 ~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~A~~~~~~~~i~~~~ 111 (236)
T PRK09392 32 LQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAAVVLDAPYLMSARTLTRSRVLMIPAEL 111 (236)
T ss_pred eeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHHHhCCCCCceEEEEcCceEEEEEeHHH
Confidence 34566666553222334567789999999842223333 466788864321 1234456777787776655554
Q ss_pred ccccc
Q 021698 289 WDMFF 293 (309)
Q Consensus 289 ~~i~~ 293 (309)
+.-++
T Consensus 112 ~~~l~ 116 (236)
T PRK09392 112 VREAM 116 (236)
T ss_pred HHHHH
Confidence 44333
No 254
>PLN02714 thiamin pyrophosphokinase
Probab=33.72 E-value=1.8e+02 Score=26.39 Aligned_cols=33 Identities=9% Similarity=0.091 Sum_probs=23.2
Q ss_pred HHHHHHHHhCCCcEEEecCC-CCcchhHHHHHHh
Q 021698 28 DALVSHLRSLNIDVEDLGTS-DYYSIGAEVGRRV 60 (309)
Q Consensus 28 ~~l~~~l~~~g~~v~d~g~~-~y~~~a~~va~~v 60 (309)
+..+++++++|.+++-+=++ ||.|+-+++-.++
T Consensus 67 ~e~~~~~~~~~~~i~~~~~eKD~TD~e~Al~~~~ 100 (229)
T PLN02714 67 PEVLDFYSNLGTKIVDESHDQDTTDLHKCIAYIR 100 (229)
T ss_pred HHHHHHHHHCCCEEEECCCCcccCHHHHHHHHHH
Confidence 45677788888888887654 7888766665544
No 255
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=33.72 E-value=1.5e+02 Score=27.58 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=40.7
Q ss_pred cEEEEE--eCc-ccHHHHHHHHHHHHhCCCcEEEecCC--CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhh
Q 021698 13 LKIIAG--ADS-FGAELKDALVSHLRSLNIDVEDLGTS--DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVA 83 (309)
Q Consensus 13 mkI~ig--~D~-~g~~lk~~l~~~l~~~g~~v~d~g~~--~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~ 83 (309)
.||++- .|. .|-.+.+.+++.+++.|++|...... +-.++...+.+. .+ ...+. |++++++-...
T Consensus 137 ~~v~~l~~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i-~~----~~~d~-vi~~~~~~~~~ 206 (344)
T cd06348 137 KRVAVFYAQDDAFSVSETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAV-LN----SKPDL-IVISALAADGG 206 (344)
T ss_pred eEEEEEEeCCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHH-Hh----cCCCE-EEECCcchhHH
Confidence 366533 455 77899999999999999999865443 234565555544 43 23444 55555553433
No 256
>PRK08105 flavodoxin; Provisional
Probab=33.62 E-value=1.4e+02 Score=25.14 Aligned_cols=58 Identities=17% Similarity=0.122 Sum_probs=39.3
Q ss_pred CcEEEEEeCcccH-HHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCcceEEEEecC-chh
Q 021698 12 PLKIIAGADSFGA-ELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGT-GVG 81 (309)
Q Consensus 12 ~mkI~ig~D~~g~-~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgt-G~G 81 (309)
++.|+-||.-.-. .+-+.|.+.|++.|++|.-.-..++.++ .. ...+.-|++|.| |-|
T Consensus 3 ~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~~~~~--------~~----~~~~~vi~~~sT~G~G 62 (149)
T PRK08105 3 KVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPELSDW--------QP----YQDELVLVVTSTTGQG 62 (149)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhhCCch--------hc----ccCCeEEEEECCCCCC
Confidence 4567888887544 6778899999999988875544333221 11 235678888888 788
No 257
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.47 E-value=85 Score=23.76 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=26.3
Q ss_pred EEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC
Q 021698 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS 47 (309)
Q Consensus 14 kI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~ 47 (309)
+|.+|-.-.+- =++.+++.|++.||+++|+..+
T Consensus 42 ~vlvGi~~~~~-~~~~l~~~l~~~g~~~~dls~n 74 (81)
T cd04907 42 RVLVGIQVPDA-DLDELKERLDALGYPYQEETDN 74 (81)
T ss_pred eEEEEEEeChH-HHHHHHHHHHHcCCCeEECCCC
Confidence 57777665554 5678999999999999998765
No 258
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=33.23 E-value=1.7e+02 Score=28.41 Aligned_cols=115 Identities=13% Similarity=0.178 Sum_probs=72.3
Q ss_pred EEEEEe--CcccH-HHHHHHHHHHHhCCC---cEEEecCCCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhc
Q 021698 14 KIIAGA--DSFGA-ELKDALVSHLRSLNI---DVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFAN 87 (309)
Q Consensus 14 kI~ig~--D~~g~-~lk~~l~~~l~~~g~---~v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aN 87 (309)
+|+|.+ .|-+. +..+-+++.|++.|| ++...-.+.-+-.+..++|.... ...+ -|+. .++--.....+
T Consensus 32 ~VaI~~~veHpaLd~~~~G~~~aLk~~G~~n~~i~~~na~~~~~~a~~iarql~~----~~~d-viv~-i~tp~Aq~~~s 105 (322)
T COG2984 32 TVAITQFVEHPALDAAREGVKEALKDAGYKNVKIDYQNAQGDLGTAAQIARQLVG----DKPD-VIVA-IATPAAQALVS 105 (322)
T ss_pred eEEEEEeecchhHHHHHHHHHHHHHhcCccCeEEEeecCCCChHHHHHHHHHhhc----CCCc-EEEe-cCCHHHHHHHH
Confidence 466654 56665 457889999999999 66666677777788899999886 2333 3332 22222333333
Q ss_pred CCC--ceEEEEeCCHHHHHHHHh--hcCcceeeecccccCHHHHHHHHHHHh
Q 021698 88 KNP--GVFATTCLTPADALNTRS--INNCNVLAVSGMSTSKESAVEILDTWL 135 (309)
Q Consensus 88 K~~--giraa~~~~~~~A~~~r~--hNnaNvl~~g~~~~~~~~a~~i~~~~l 135 (309)
..+ =|.++-++|+..|++-.+ -++.||--+.-.. -.+.-.+.+++-+
T Consensus 106 ~~~~iPVV~aavtd~v~a~Lv~~~~~pg~NvTGvsD~~-~v~q~i~lik~~~ 156 (322)
T COG2984 106 ATKTIPVVFAAVTDPVGAKLVKSLEQPGGNVTGVSDLL-PVAQQIELIKALL 156 (322)
T ss_pred hcCCCCEEEEccCchhhccCCccccCCCCceeecCCcc-hHHHHHHHHHHhC
Confidence 333 488888999999999886 3557776555443 2223344444433
No 259
>cd03085 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl t
Probab=32.79 E-value=1.4e+02 Score=30.91 Aligned_cols=44 Identities=11% Similarity=0.202 Sum_probs=35.8
Q ss_pred EEEEEeC--cccHHHHHHHHHHHHhCCCcEEEe---cCCCCcchhHHHH
Q 021698 14 KIIAGAD--SFGAELKDALVSHLRSLNIDVEDL---GTSDYYSIGAEVG 57 (309)
Q Consensus 14 kI~ig~D--~~g~~lk~~l~~~l~~~g~~v~d~---g~~~y~~~a~~va 57 (309)
+|+||-| +.+-.+.+.+.+-|.+.|.+|.++ |.-.-|-++..+-
T Consensus 51 ~VvVG~D~R~~S~~~a~~~a~~L~~~G~~V~~~~~~G~~pTP~l~fav~ 99 (548)
T cd03085 51 TLVVGGDGRYYNKEAIQIIIKIAAANGVGKVVVGQNGLLSTPAVSAVIR 99 (548)
T ss_pred eEEEEECCCcChHHHHHHHHHHHHHCCCeEEEeCCCCccCchHHHHHHH
Confidence 6999999 567899999999999999999999 5555555555443
No 260
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=32.51 E-value=2.2e+02 Score=25.10 Aligned_cols=66 Identities=12% Similarity=0.040 Sum_probs=36.0
Q ss_pred EEcCCCcCCccccCccEEEEEEeCEEEEEEEe-CCeE---EEecCCcEEEECC----CCcEEEEEcCCeEEEEE
Q 021698 219 RFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLT-KGER---FDLTVGDYLFTPA----GDVHRVKYYEETEFFIK 284 (309)
Q Consensus 219 ~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~-~~~~---~~L~pGd~i~iP~----g~~H~~~n~~d~~~~i~ 284 (309)
++++|...-.---+...+.+|++|.+++.... +++. ..+.|||++-.+. ..++...+.+++.++.+
T Consensus 41 ~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~~~~~~~~~~~a~~~~~i~~i 114 (235)
T PRK11161 41 PIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAIGSGQHPSFAQALETSMVCEI 114 (235)
T ss_pred eecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccccCCCCcceEEEeccEEEEEE
Confidence 46666654332233456778999999984222 2333 2347898764321 22334555566655433
No 261
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=32.50 E-value=90 Score=28.12 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=23.8
Q ss_pred CCeEEEecCCcEEEECCCCcEEEEEcC
Q 021698 251 KGERFDLTVGDYLFTPAGDVHRVKYYE 277 (309)
Q Consensus 251 ~~~~~~L~pGd~i~iP~g~~H~~~n~~ 277 (309)
++....|++||.+.+|+...|.+.-.+
T Consensus 142 g~h~VklPAGdLVlypStSlH~VtPVT 168 (229)
T COG3128 142 GNHRVKLPAGDLVLYPSTSLHEVTPVT 168 (229)
T ss_pred cceEEeccCCCEEEcccccceeccccc
Confidence 567788999999999999999997766
No 262
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=32.46 E-value=1.9e+02 Score=28.88 Aligned_cols=67 Identities=15% Similarity=0.137 Sum_probs=40.5
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-C--C------cchhHHHHHHhhcCCC------CCCcceEEEE
Q 021698 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-D--Y------YSIGAEVGRRVSSSDS------SETTTRGLVA 75 (309)
Q Consensus 11 ~~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-~--y------~~~a~~va~~v~~~~~------~~~~~~gi~~ 75 (309)
.++||+|-+-|.. -...+.+.|++.|.+|+-+..+ | + +..-..+.+.|.+..+ ++.+||-+++
T Consensus 176 ~~~kVvvD~~~Ga--~~~~~~~il~~lg~~v~~~~~~~dg~~~~~~~~~~~~~~l~~~v~~~~adlGia~DgDgDR~~~v 253 (450)
T PRK14314 176 KGLKIVLDCANGA--AYKVAPAVFEELGAEVICIGVEPNGLNINAGCGSLHPEVIAKAVIEHGADLGIALDGDADRLIVV 253 (450)
T ss_pred CCCEEEEECCCch--HHHHHHHHHHHcCCeEEEeccCCCCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEcCCCceEEEE
Confidence 5789999887744 3566677888899999866432 1 1 1233456666654110 4555555555
Q ss_pred ecCc
Q 021698 76 CGTG 79 (309)
Q Consensus 76 cgtG 79 (309)
+..|
T Consensus 254 d~~G 257 (450)
T PRK14314 254 DEKG 257 (450)
T ss_pred CCCC
Confidence 5555
No 263
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=32.09 E-value=1.5e+02 Score=27.58 Aligned_cols=63 Identities=14% Similarity=0.127 Sum_probs=40.5
Q ss_pred EEEEE--eCcccHHHHHHHHHHHHhCCCcEEEecCCC----CcchhHHHHHHhhcCCCCCCcceEEEEecCchhh
Q 021698 14 KIIAG--ADSFGAELKDALVSHLRSLNIDVEDLGTSD----YYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGV 82 (309)
Q Consensus 14 kI~ig--~D~~g~~lk~~l~~~l~~~g~~v~d~g~~~----y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~ 82 (309)
||++- .|..|..+.+.+.+.|++.|.+|...-..+ -.++...+.+ +.+ ...+.|++|+.+.-.
T Consensus 137 ~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~-i~~-----~~~dvvi~~~~~~~~ 205 (350)
T cd06366 137 RVATIYEDDDYGSGGLPDLVDALQEAGIEISYRAAFPPSANDDDITDALKK-LKE-----KDSRVIVVHFSPDLA 205 (350)
T ss_pred EEEEEEEcCcccchhHHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHH-Hhc-----CCCeEEEEECChHHH
Confidence 44444 455588899999999999999988644321 1355444444 333 225788888877533
No 264
>PHA02890 hypothetical protein; Provisional
Probab=31.55 E-value=1.9e+02 Score=27.17 Aligned_cols=39 Identities=10% Similarity=0.041 Sum_probs=30.9
Q ss_pred EEEEeCEEEEEEEeCC--eEEEecCCcEEEECCCCcEEEEE
Q 021698 237 LVVLEGKKSVWNLTKG--ERFDLTVGDYLFTPAGDVHRVKY 275 (309)
Q Consensus 237 vyVl~G~l~v~~~~~~--~~~~L~pGd~i~iP~g~~H~~~n 275 (309)
+.+|+|+.++....++ .+..++.|+.+.+.-+..|+...
T Consensus 96 VlCL~Gs~~In~~~~d~~iS~~I~kGeaF~mdv~t~H~i~T 136 (278)
T PHA02890 96 VACIEGSCKINVNIGDREISDHIHENQGFIMDVGLDHAIDS 136 (278)
T ss_pred EEEeCCeEEEEEecCCceeeeeeecCceEEEEccceEEEEc
Confidence 3479999988533444 34789999999999999999866
No 265
>PRK09453 phosphodiesterase; Provisional
Probab=31.51 E-value=77 Score=27.19 Aligned_cols=30 Identities=10% Similarity=0.081 Sum_probs=20.8
Q ss_pred cEEEEEeC-cccHHHHHHHHHHHHhCCCcEE
Q 021698 13 LKIIAGAD-SFGAELKDALVSHLRSLNIDVE 42 (309)
Q Consensus 13 mkI~ig~D-~~g~~lk~~l~~~l~~~g~~v~ 42 (309)
|||++-|| |..++--+++.+.+++.+.+.+
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~~~d~i 31 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQSGADWL 31 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhcCCCEE
Confidence 89999999 5444444667777877765533
No 266
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=31.42 E-value=57 Score=34.62 Aligned_cols=48 Identities=21% Similarity=0.231 Sum_probs=34.1
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchh
Q 021698 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVG 81 (309)
Q Consensus 29 ~l~~~l~~~g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G 81 (309)
.|.+.|++.|++|++++. +|+..+...+.+.+. .++|.-|+-.|||.|
T Consensus 213 ~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~-----~~~DlvItTGGts~G 262 (659)
T PLN02699 213 MLLAAAIQQQCKVVDLGIARDDEEELERILDEAIS-----SGVDILLTSGGVSMG 262 (659)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhc-----CCCCEEEECCCCCCC
Confidence 577788999999999985 456666666655443 246777777777776
No 267
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.32 E-value=1e+02 Score=23.24 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=27.5
Q ss_pred EEEEEeCccc-HHHHHHHHHHHHhCCCcEEEecCC
Q 021698 14 KIIAGADSFG-AELKDALVSHLRSLNIDVEDLGTS 47 (309)
Q Consensus 14 kI~ig~D~~g-~~lk~~l~~~l~~~g~~v~d~g~~ 47 (309)
+|.++-+-.+ .+-.+.+++.|++.||++++...+
T Consensus 41 ~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~~~~ 75 (85)
T cd04906 41 HIFVGVSVANGAEELAELLEDLKSAGYEVVDLSDD 75 (85)
T ss_pred EEEEEEEeCCcHHHHHHHHHHHHHCCCCeEECCCC
Confidence 5677666666 777889999999999999987654
No 268
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=30.64 E-value=46 Score=27.81 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=22.2
Q ss_pred eCcccHHH------HHHHHHHHHhCCCcEEEecCCCCcc
Q 021698 19 ADSFGAEL------KDALVSHLRSLNIDVEDLGTSDYYS 51 (309)
Q Consensus 19 ~D~~g~~l------k~~l~~~l~~~g~~v~d~g~~~y~~ 51 (309)
.|+.|++. -++|+.-+++.|.+|.||..+.|.+
T Consensus 64 ydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~s~~~y~~ 102 (130)
T PF04914_consen 64 YDYTGLSKEMRQEYYKKIKYQLKSQGFNVADFSDDEYEP 102 (130)
T ss_dssp HHHTT--HHHHHHHHHHHHHHHHTTT--EEE-TTGTTST
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHCCCEEEecccCCCCC
Confidence 57888743 5688999999999999999875543
No 269
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=30.60 E-value=81 Score=28.18 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=28.8
Q ss_pred CcEEEEE-eCcccHHHHHHHHHHHHhCCCcEEEe
Q 021698 12 PLKIIAG-ADSFGAELKDALVSHLRSLNIDVEDL 44 (309)
Q Consensus 12 ~mkI~ig-~D~~g~~lk~~l~~~l~~~g~~v~d~ 44 (309)
+|||+|| |--+|..+--.|.+.|++.|+|+.=+
T Consensus 2 ~~riivgisGASG~iygvrlLe~L~~~~~e~hlv 35 (191)
T COG0163 2 MKRIIVGISGASGAIYGVRLLEVLRELGVETHLV 35 (191)
T ss_pred CcEEEEEEeccccHHHHHHHHHHHHhcCceEEEE
Confidence 5688888 88899999999999999999888754
No 270
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=30.29 E-value=62 Score=32.21 Aligned_cols=97 Identities=16% Similarity=0.188 Sum_probs=55.3
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhh----hhhhcC-----CCceEEEEe
Q 021698 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGV----AIFANK-----NPGVFATTC 97 (309)
Q Consensus 29 ~l~~~l~~~g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~----~i~aNK-----~~giraa~~ 97 (309)
.|...|++.|+++++++. +|...+...+.+. . .++|.-|+..|++.|- -=+..+ |.||.-
T Consensus 208 ~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a-~-----~~~DlvIttGG~S~G~~D~~~~al~~lG~~~f~~v~~--- 278 (411)
T PRK10680 208 AVHLMLEQLGCEVINLGIIRDDPHALRAAFIEA-D-----SQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAI--- 278 (411)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHh-c-----cCCCEEEEcCCCCCCCcchHHHHHHhcCcEEEEEEEE---
Confidence 477788999999999985 4455555544443 2 3578888888888772 212222 344431
Q ss_pred CCHHHHHHHHhhcCcceeeecccccCHHHHH-HHHHHHh
Q 021698 98 LTPADALNTRSINNCNVLAVSGMSTSKESAV-EILDTWL 135 (309)
Q Consensus 98 ~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~-~i~~~~l 135 (309)
.|=.-.+.-..++.=|++|++.-++...+. .++.-+|
T Consensus 279 -kPGkp~~~g~~~~~~v~gLPGnP~sa~~~~~~~v~P~l 316 (411)
T PRK10680 279 -KPGKPFAFGKLSNSWFCGLPGNPVSAALTFYQLVQPLL 316 (411)
T ss_pred -ecCcceEEEEECCeEEEECCCCHHHHHHHHHHHHHHHH
Confidence 111001111236677889998866665543 3344444
No 271
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=30.00 E-value=1e+02 Score=24.21 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=30.8
Q ss_pred EEEEEeCcccHHHHHHHHHHHHhCCCcEEEe-cCCCCcchhHHHHHHh
Q 021698 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDL-GTSDYYSIGAEVGRRV 60 (309)
Q Consensus 14 kI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~-g~~~y~~~a~~va~~v 60 (309)
-|+|++| +.-..++.+..+-+..+.+++.+ |+ -.++++++
T Consensus 35 lViiA~D-~~~~~~~~i~~~c~~~~Ip~~~~~~t------k~eLG~a~ 75 (99)
T PRK01018 35 LVIVASN-CPKDIKEDIEYYAKLSGIPVYEYEGS------SVELGTLC 75 (99)
T ss_pred EEEEeCC-CCHHHHHHHHHHHHHcCCCEEEECCC------HHHHHHHh
Confidence 4777777 78899999999999999999875 44 25555555
No 272
>PLN02868 acyl-CoA thioesterase family protein
Probab=29.67 E-value=1.8e+02 Score=28.64 Aligned_cols=70 Identities=16% Similarity=0.091 Sum_probs=39.0
Q ss_pred EEEcCCCcCCccccCccEEEEEEeCEEEEEEEeC-Ce--EEEecCCcEEEEC-CC--CcEEEEEcCCeEEEEEEcC
Q 021698 218 VRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK-GE--RFDLTVGDYLFTP-AG--DVHRVKYYEETEFFIKWDG 287 (309)
Q Consensus 218 v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~-~~--~~~L~pGd~i~iP-~g--~~H~~~n~~d~~~~i~~~g 287 (309)
.++++|..+-..-.+...+++|++|++++..... ++ ...+.+||++-.. .+ ....+++.+++.++.+...
T Consensus 34 ~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~l~~~~~~~~~~A~~d~~v~~ip~~ 109 (413)
T PLN02868 34 KRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYGLSGSVHSADVVAVSELTCLVLPHE 109 (413)
T ss_pred EEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehhhCCCCcccEEEECCCEEEEEEcHH
Confidence 4556666553333344568889999999842221 11 3567899977643 11 1223455566666544443
No 273
>PF06999 Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: IPR009737 This family contains a number of bacterial and eukaryotic proteins approximately 400 residues long that resemble ferredoxin and appear to have sucrolytic activity [].
Probab=29.59 E-value=1e+02 Score=27.67 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=46.4
Q ss_pred ceEEEEecCchhhhhhhcCCCceEEEEeCCHHHHHHHHhhcC--------------------cceeee----ccc----c
Q 021698 70 TRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINN--------------------CNVLAV----SGM----S 121 (309)
Q Consensus 70 ~~gi~~cgtG~G~~i~aNK~~giraa~~~~~~~A~~~r~hNn--------------------aNvl~~----g~~----~ 121 (309)
..=||||+=|. +-.|||.+--+--+++.+...+ +|||++ +.. -
T Consensus 132 ~~~iLVCtHg~---------RD~rCg~~Gp~l~~~l~~~~~~~~l~~~~V~~iSHiGGHkfAgNvIiy~~~~p~g~wyGr 202 (230)
T PF06999_consen 132 KPLILVCTHGK---------RDKRCGILGPPLARELEKELRERGLSRDRVWEISHIGGHKFAGNVIIYSKPKPDGIWYGR 202 (230)
T ss_pred CCEEEEcCCCC---------cCCchhcccHHHHHHHHHHhhhcCCccceEEEecccccceecCeEEEEecCCCcEEEEEe
Confidence 56789999874 7899999987777777765543 899999 665 3
Q ss_pred cCHHHHHHHHHH-HhcC
Q 021698 122 TSKESAVEILDT-WLKT 137 (309)
Q Consensus 122 ~~~~~a~~i~~~-~l~~ 137 (309)
+.++.+..||+. ..+.
T Consensus 203 v~p~~v~~iv~~t~~~g 219 (230)
T PF06999_consen 203 VTPEDVEGIVDATILDG 219 (230)
T ss_pred eCHHHHHHHHHHHHhCC
Confidence 789999999999 6554
No 274
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=29.29 E-value=66 Score=32.12 Aligned_cols=47 Identities=23% Similarity=0.308 Sum_probs=33.3
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchh
Q 021698 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVG 81 (309)
Q Consensus 29 ~l~~~l~~~g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G 81 (309)
.|...|++.|+++++++. ++...+...+.+.+. .+|.-|+-.|++.|
T Consensus 224 ~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~------~~DlIItTGG~S~G 272 (419)
T PRK14690 224 MLLALARRWGHAPVDLGRVGDDRAALAARLDRAAA------EADVILTSGGASAG 272 (419)
T ss_pred HHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCc------cCCEEEEcCCccCC
Confidence 567778999999999986 455555555555532 46777777777777
No 275
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=29.17 E-value=1.3e+02 Score=34.45 Aligned_cols=35 Identities=26% Similarity=0.257 Sum_probs=26.8
Q ss_pred cEEEEEeCcccH-HH-HHHHHHHHHhCCCcEEEecCC
Q 021698 13 LKIIAGADSFGA-EL-KDALVSHLRSLNIDVEDLGTS 47 (309)
Q Consensus 13 mkI~ig~D~~g~-~l-k~~l~~~l~~~g~~v~d~g~~ 47 (309)
-||++++=..-. +| |+.+.-.|+..||+|+|+|.+
T Consensus 752 gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~ 788 (1229)
T PRK09490 752 GKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVM 788 (1229)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCC
Confidence 489998644322 34 577888899999999999985
No 276
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=28.51 E-value=67 Score=33.63 Aligned_cols=101 Identities=15% Similarity=0.182 Sum_probs=57.8
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhh----hhhhcCCCceEEE-EeCCHH
Q 021698 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGV----AIFANKNPGVFAT-TCLTPA 101 (309)
Q Consensus 29 ~l~~~l~~~g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~----~i~aNK~~giraa-~~~~~~ 101 (309)
.|+..|++.|+++.+++. ++...+...+.+... ++|.-|+..|||.|- -=+..++-.++.- +--.+-
T Consensus 398 ~L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~------~~DlIIttGG~s~G~~D~~~~al~~lG~i~f~~v~~kPG 471 (597)
T PRK14491 398 TIKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAA------QADVVISSGGVSVGDADYIKTALAKLGQIDFWRINMRPG 471 (597)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhh------cCCEEEEcCCccCCCcccHHHHHHhcCcEEEEEEEeecC
Confidence 367778899999999985 455556555555532 478888888888873 2233343222211 111111
Q ss_pred HHHHHHhhcCcceeeecccccCHHHHH-HHHHHHh
Q 021698 102 DALNTRSINNCNVLAVSGMSTSKESAV-EILDTWL 135 (309)
Q Consensus 102 ~A~~~r~hNnaNvl~~g~~~~~~~~a~-~i~~~~l 135 (309)
....+-..++.=|++|++.-++...+. .++.-.|
T Consensus 472 kp~~~g~~~~~~v~~LPGnP~aa~~~~~~~v~P~l 506 (597)
T PRK14491 472 RPLAFGQIGDSPFFGLPGNPVAVMVSFLQFVEPAL 506 (597)
T ss_pred CcEEEEEECCEEEEEccCCcHHHHHHHHHHHHHHH
Confidence 111222346777889988876665553 4444444
No 277
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=28.38 E-value=2.5e+02 Score=20.96 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=44.5
Q ss_pred EEEEEeCcccH-HHHHHHHHHHHhCCCcEEEecCCCC-cchhHHHHHHhhcCCCCCCcceEEEEecCchhhh
Q 021698 14 KIIAGADSFGA-ELKDALVSHLRSLNIDVEDLGTSDY-YSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVA 83 (309)
Q Consensus 14 kI~ig~D~~g~-~lk~~l~~~l~~~g~~v~d~g~~~y-~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~ 83 (309)
||+|.|=...+ +.++.|++.|...|++.+.+..... ..-...+|..-.+ ++|.-|+|=|.--|..
T Consensus 1 rVFiSSt~~Dl~~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~-----~cDifI~ilG~rYG~~ 67 (83)
T PF13271_consen 1 RVFISSTFRDLKEERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVD-----ECDIFILILGNRYGSV 67 (83)
T ss_pred CEEEecChhhHHHHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHh-----hCCEEEEeeccccCCC
Confidence 57888777666 3678999999999988876544211 2344667777664 6788777777655543
No 278
>PLN02307 phosphoglucomutase
Probab=28.29 E-value=2.2e+02 Score=29.80 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=45.3
Q ss_pred EEEEEeC--cccHHHHHHHHHHHHhCCCcEEEec---CCCCcchhHHHHHH--------h-hcCCCCC---CcceEEEEe
Q 021698 14 KIIAGAD--SFGAELKDALVSHLRSLNIDVEDLG---TSDYYSIGAEVGRR--------V-SSSDSSE---TTTRGLVAC 76 (309)
Q Consensus 14 kI~ig~D--~~g~~lk~~l~~~l~~~g~~v~d~g---~~~y~~~a~~va~~--------v-~~~~~~~---~~~~gi~~c 76 (309)
+|+||-| +.+-.+.+.+.+-|.+.|++|++++ .-.-|-++..+-.. | ..++.+- ..+.||=+.
T Consensus 63 ~VvVG~D~R~~S~~fa~~~a~~L~a~Gi~V~~~~~~G~~PTP~vsfav~~~~~~~a~gGImITASHNP~~~~eyNGiK~~ 142 (579)
T PLN02307 63 TLVLGGDGRYFNKEAIQIIIKIAAANGVRRVWVGQNGLLSTPAVSAVIRERDGSKANGGFILTASHNPGGPEEDFGIKYN 142 (579)
T ss_pred eEEEEeCCCcchHHHHHHHHHHHHHCCCEEEEeCCCCccCchHHHHHHHHhcccCCCeEEEEecCCCCCCCCCCCEEEEE
Confidence 5999999 5677999999999999999999995 45566666655432 1 1222233 467788776
Q ss_pred c
Q 021698 77 G 77 (309)
Q Consensus 77 g 77 (309)
+
T Consensus 143 ~ 143 (579)
T PLN02307 143 Y 143 (579)
T ss_pred C
Confidence 4
No 279
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=28.22 E-value=56 Score=22.70 Aligned_cols=40 Identities=15% Similarity=-0.066 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhHhhhhcccccccc
Q 021698 126 SAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIG 170 (309)
Q Consensus 126 ~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~l~~s~~el~~~~ 170 (309)
....-+..|++.+. ...+...+..|+.+|++++.||++..
T Consensus 22 is~~tl~~~~~~~~-----~~~~~~~l~~ia~~l~~~~~el~~~~ 61 (63)
T PF13443_consen 22 ISRSTLSRILNGKP-----SNPSLDTLEKIAKALNCSPEELFEYE 61 (63)
T ss_dssp --HHHHHHHHTTT----------HHHHHHHHHHHT--HHHCTECC
T ss_pred cCHHHHHHHHhccc-----ccccHHHHHHHHHHcCCCHHHHhhcC
Confidence 34566778887653 35777889999999999999998865
No 280
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=28.07 E-value=2.3e+02 Score=28.13 Aligned_cols=67 Identities=22% Similarity=0.134 Sum_probs=40.2
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-CC---------cchhHHHHHHhhcCCC------CCCcceEEE
Q 021698 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-DY---------YSIGAEVGRRVSSSDS------SETTTRGLV 74 (309)
Q Consensus 11 ~~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-~y---------~~~a~~va~~v~~~~~------~~~~~~gi~ 74 (309)
+++||++-+-|..-. ..+.+.|++.|.+|+-+..+ +. ++.-..+.+.|.+..+ ++.+||-.+
T Consensus 167 ~~lkIvvd~~~G~~~--~~~~~ll~~lG~~v~~i~~~~d~~~~~~~~~~~~~l~~l~~~v~~~~adlgia~DgDaDR~~v 244 (441)
T cd05805 167 SGLKVVIDYAYGVAG--IVLPGLLSRLGCDVVILNARLDEDAPRTDTERQRSLDRLGRIVKALGADFGVIIDPNGERLIL 244 (441)
T ss_pred cCCeEEEECCCchHH--HHHHHHHHHcCCEEEEEecccCCccCCCCccchhHHHHHHHHHHhCCCCEEEEEcCCCCEEEE
Confidence 478999988886443 56777788999999865433 11 1222344455544111 566666666
Q ss_pred EecCc
Q 021698 75 ACGTG 79 (309)
Q Consensus 75 ~cgtG 79 (309)
++..|
T Consensus 245 vd~~G 249 (441)
T cd05805 245 VDEAG 249 (441)
T ss_pred ECCCC
Confidence 66555
No 281
>PRK12483 threonine dehydratase; Reviewed
Probab=28.03 E-value=1.1e+02 Score=31.55 Aligned_cols=73 Identities=21% Similarity=0.325 Sum_probs=46.7
Q ss_pred CcceEEEEecCc---hhhhhhhcCCCceEEEEeCC---HHHHHHHHhhcCcceeeecccccCH-HHHHHHHHH---HhcC
Q 021698 68 TTTRGLVACGTG---VGVAIFANKNPGVFATTCLT---PADALNTRSINNCNVLAVSGMSTSK-ESAVEILDT---WLKT 137 (309)
Q Consensus 68 ~~~~gi~~cgtG---~G~~i~aNK~~giraa~~~~---~~~A~~~r~hNnaNvl~~g~~~~~~-~~a~~i~~~---~l~~ 137 (309)
+..+||+-|++| +|++++|.+. ||.|.++-. +..-...-+.-+|+|+-.|..+-.. +.|.++.+. ++-.
T Consensus 83 ~~~~GVV~aSaGNha~gvA~aA~~l-Gi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~~~d~a~~~A~~la~e~g~~~v~ 161 (521)
T PRK12483 83 QLARGVITASAGNHAQGVALAAARL-GVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGESFPDALAHALKLAEEEGLTFVP 161 (521)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHh-CCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCeeeC
Confidence 346788888865 7889999876 999998843 2332344455789999998754322 445555543 2334
Q ss_pred CCCC
Q 021698 138 PFKA 141 (309)
Q Consensus 138 ~f~~ 141 (309)
+|++
T Consensus 162 pfdd 165 (521)
T PRK12483 162 PFDD 165 (521)
T ss_pred CCCC
Confidence 5554
No 282
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=27.91 E-value=1.8e+02 Score=21.27 Aligned_cols=50 Identities=24% Similarity=0.250 Sum_probs=29.6
Q ss_pred EEEEcCCCcCCccccCccEEEEEEeCEEEEEEEe-CC---eEEEecCCcEEEEC
Q 021698 217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLT-KG---ERFDLTVGDYLFTP 266 (309)
Q Consensus 217 ~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~-~~---~~~~L~pGd~i~iP 266 (309)
...+++|...-..--+...+.+|++|.+.+.... ++ ....+.+|+++-..
T Consensus 19 ~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 19 PVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGEL 72 (120)
T ss_pred EEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechh
Confidence 3456677665333233456778999999984211 22 23566788876443
No 283
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=27.79 E-value=37 Score=33.49 Aligned_cols=49 Identities=20% Similarity=0.313 Sum_probs=32.3
Q ss_pred ecCCcEEEECCCCcEEEEEcCCeEEE-EEEcCCcc-----cccchhHHHHHHHHh
Q 021698 257 LTVGDYLFTPAGDVHRVKYYEETEFF-IKWDGRWD-----MFFDEDLETAKKAVE 305 (309)
Q Consensus 257 L~pGd~i~iP~g~~H~~~n~~d~~~~-i~~~g~~~-----i~~~~~~~~a~~~~~ 305 (309)
-.||+.+|+|+|=-|++.|.+|+.-+ =-|.+... -++-++++.-.++|+
T Consensus 272 Qepge~VFvPsGW~hQV~NL~dTISINHNW~N~~nl~~~w~~Lk~~y~a~~esis 326 (427)
T KOG2131|consen 272 QEPGETVFVPSGWHHQVLNLGDTISINHNWCNATNLAWMWDALKEDYPALAESIS 326 (427)
T ss_pred ccCCceeeccCccccccccccceeeecccccccccHHHHHHHHHhhhhhhhhhhh
Confidence 36999999999999999999987543 23333222 134455555555554
No 284
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=27.73 E-value=72 Score=33.10 Aligned_cols=48 Identities=29% Similarity=0.322 Sum_probs=35.5
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhh
Q 021698 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGV 82 (309)
Q Consensus 29 ~l~~~l~~~g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~ 82 (309)
.|...|++.|+++..++. +|+..+...+.+++. ++|.-|+..||+.|-
T Consensus 210 ~L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~al~------~~DlVIttGGtS~G~ 259 (546)
T PRK14497 210 YLYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAIS------VADVLILTGGTSAGE 259 (546)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhh------cCCEEEEcCCccCCC
Confidence 566778899999999885 566666666666543 478888888888873
No 285
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=27.35 E-value=1.9e+02 Score=27.42 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=39.8
Q ss_pred cEEEE-EeCcc--cHHHHHHHHHHHHhCCCcEEEecCCC----CcchhHHHHHHhhcCCCCCCcceEEEEecCch
Q 021698 13 LKIIA-GADSF--GAELKDALVSHLRSLNIDVEDLGTSD----YYSIGAEVGRRVSSSDSSETTTRGLVACGTGV 80 (309)
Q Consensus 13 mkI~i-g~D~~--g~~lk~~l~~~l~~~g~~v~d~g~~~----y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~ 80 (309)
.|++| ..|.. |..+.+.+++.+++.|.+|...-... ..++...+.+ +.+ .. +.|++|+.+-
T Consensus 138 ~~v~ii~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~d~~~~l~~-i~~-----~~-~vii~~~~~~ 205 (389)
T cd06352 138 HVAVVVYSDDSENCFFTLEALEAALREFNLTVSHVVFMEDNSGAEDLLEILQD-IKR-----RS-RIIIMCGSSE 205 (389)
T ss_pred eEEEEEEecCCccHHHHHHHHHHHHHhcCCeEEEEEEecCCccchhHHHHHHH-hhh-----cc-eEEEEECCHH
Confidence 35666 45554 88999999999999999988643221 2445444433 333 22 7888888753
No 286
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=27.22 E-value=2.6e+02 Score=27.70 Aligned_cols=67 Identities=18% Similarity=0.096 Sum_probs=40.8
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-C--C------cchhHHHHHHhhcCCC------CCCcceEEEE
Q 021698 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-D--Y------YSIGAEVGRRVSSSDS------SETTTRGLVA 75 (309)
Q Consensus 11 ~~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-~--y------~~~a~~va~~v~~~~~------~~~~~~gi~~ 75 (309)
+.+||++-+-|..- ...+.+.|++.|.+|+-+-.+ | + ++.-..+.+.|.+..+ +|.+||-+++
T Consensus 172 ~~~kVvvD~~~G~~--~~~~~~ll~~lG~~v~~l~~~~dg~~~~~~~~~~~l~~l~~~v~~~~adlGia~DgD~DR~~~v 249 (440)
T PRK14323 172 SGLKVALDCANGAA--YRLAPKVFQAAGADVFALFNTPDGRNINRGCGSTHPEALQRFVVEGGLDLGVAFDGDADRALFV 249 (440)
T ss_pred cCCEEEEECCCchH--HHHHHHHHHHcCCcEEEEeccCCCCcCCCCCCCCCHHHHHHHHhccCCCEEEEeCCCcceeEEE
Confidence 46899999888544 456777888999999876432 1 1 1222356666655211 4555555555
Q ss_pred ecCc
Q 021698 76 CGTG 79 (309)
Q Consensus 76 cgtG 79 (309)
...|
T Consensus 250 D~~G 253 (440)
T PRK14323 250 DRRG 253 (440)
T ss_pred CCCC
Confidence 5555
No 287
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=27.21 E-value=50 Score=30.13 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=23.3
Q ss_pred EeCcccHHHHHHHHHHHHhCCCcEEEec
Q 021698 18 GADSFGAELKDALVSHLRSLNIDVEDLG 45 (309)
Q Consensus 18 g~D~~g~~lk~~l~~~l~~~g~~v~d~g 45 (309)
.||+-- .|+..|++.|+.+||+|+|--
T Consensus 31 TSd~~~-~l~~~i~~~L~~kGY~vv~~P 57 (215)
T PF05818_consen 31 TSDKDI-NLESQIISALQAKGYQVVDDP 57 (215)
T ss_pred CCCCcc-chHHHHHHHHHHCCCEEecCh
Confidence 478765 899999999999999999743
No 288
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=26.80 E-value=2.9e+02 Score=26.36 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=45.4
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC---CC---------cchhHHHHHHhhcCCCCCCcceEEEEecC
Q 021698 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS---DY---------YSIGAEVGRRVSSSDSSETTTRGLVACGT 78 (309)
Q Consensus 11 ~~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~---~y---------~~~a~~va~~v~~~~~~~~~~~gi~~cgt 78 (309)
+++||+|-+-|..- +..+.+.|++.|.+|+-+..+ .| +..-..+.+.|.+ ..++.|+.+.|-
T Consensus 111 ~~~kvvvD~~~G~~--~~~~~~ll~~lg~~v~~~n~~~d~~F~~~~p~p~~~~~l~~l~~~v~~----~~adlG~a~DgD 184 (355)
T cd03084 111 KKFKVVVDSVNGVG--GPIAPQLLEKLGAEVIPLNCEPDGNFGNINPDPGSETNLKQLLAVVKA----EKADFGVAFDGD 184 (355)
T ss_pred CCCEEEEECCCchH--HHHHHHHHHHcCCcEEEEcCcCCCCCCCCCCCCCchhhHHHHHHHHHh----cCCCEEEEEcCC
Confidence 46799998877544 566777888889999876543 11 1233456666665 556777777776
Q ss_pred chhhhhhhc
Q 021698 79 GVGVAIFAN 87 (309)
Q Consensus 79 G~G~~i~aN 87 (309)
|==+.++-+
T Consensus 185 gDRl~~vd~ 193 (355)
T cd03084 185 ADRLIVVDE 193 (355)
T ss_pred CceeEEECC
Confidence 654444433
No 289
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=26.56 E-value=2.6e+02 Score=27.74 Aligned_cols=71 Identities=11% Similarity=0.022 Sum_probs=45.2
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC---C-------CcchhHHHHHHhhcCCCCCCcceEEEEecCch
Q 021698 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS---D-------YYSIGAEVGRRVSSSDSSETTTRGLVACGTGV 80 (309)
Q Consensus 11 ~~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~---~-------y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~ 80 (309)
+++||++-+-|..-. ..+.+.|++.|.+|+-+..+ + .++.-..+.+.|.+ ..+|.||.+.|-|=
T Consensus 172 ~~lkVvvd~~~G~~~--~~~~~ll~~lg~~v~~~~~~~d~~F~~~p~p~~~~l~~l~~~v~~----~~adlgi~~D~DgD 245 (445)
T cd05803 172 RNFKVAVDSVNGAGG--LLIPRLLEKLGCEVIVLNCEPTGLFPHTPEPLPENLTQLCAAVKE----SGADVGFAVDPDAD 245 (445)
T ss_pred CCCEEEEECCCCcHH--HHHHHHHHHcCCEEEEeCCcCCCCCCCCCCCChHHHHHHHHHHHh----cCCCEEEeeCCCCc
Confidence 468999998885543 45677888999998755432 1 12344556666665 45667777666665
Q ss_pred hhhhhhc
Q 021698 81 GVAIFAN 87 (309)
Q Consensus 81 G~~i~aN 87 (309)
-+.+.-+
T Consensus 246 R~~ivd~ 252 (445)
T cd05803 246 RLALVDE 252 (445)
T ss_pred eEEEECC
Confidence 5444444
No 290
>PRK01424 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=26.40 E-value=59 Score=31.91 Aligned_cols=62 Identities=24% Similarity=0.370 Sum_probs=46.0
Q ss_pred EEEEeCcccHHHHHHHHHHHHhCCCcEEEe------cCC---------------CCcchhHHHHHHhhcCCCCCCcceEE
Q 021698 15 IIAGADSFGAELKDALVSHLRSLNIDVEDL------GTS---------------DYYSIGAEVGRRVSSSDSSETTTRGL 73 (309)
Q Consensus 15 I~ig~D~~g~~lk~~l~~~l~~~g~~v~d~------g~~---------------~y~~~a~~va~~v~~~~~~~~~~~gi 73 (309)
=++++--||...-+.|.+.|+++|+++..+ ||. .|+.+....|+.|.+. ....+=|
T Consensus 196 GSVAAPTAGLHFT~~ll~~L~~kGv~~a~vTLHVG~GTF~PV~~e~i~~H~MH~E~~~I~~eta~~In~a---k~~G~RI 272 (366)
T PRK01424 196 GSVAAPTAGLHFTKDILDKLKAKGIQTAFLTLHVGAGTFLPVKTENIHEHKMHTEYCSITPETAEIINKA---KQEGRRI 272 (366)
T ss_pred CceecCCCcCCCCHHHHHHHHHCCCeEEEEEEeecCCCCcCccccccccCCccceEEEECHHHHHHHHHH---HHcCCeE
Confidence 367888999999999999999999998764 442 2788999999999863 2222345
Q ss_pred EEecCc
Q 021698 74 VACGTG 79 (309)
Q Consensus 74 ~~cgtG 79 (309)
+-.||=
T Consensus 273 iAVGTT 278 (366)
T PRK01424 273 IAVGTT 278 (366)
T ss_pred EEEecc
Confidence 555553
No 291
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=26.13 E-value=2e+02 Score=27.03 Aligned_cols=61 Identities=11% Similarity=0.066 Sum_probs=38.8
Q ss_pred EEEEE--eCcccHHHHHHHHHHHHhCCCcEEEecCC--CCcchhHHHHHHhhcCCCCCCcceEEEEecCch
Q 021698 14 KIIAG--ADSFGAELKDALVSHLRSLNIDVEDLGTS--DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGV 80 (309)
Q Consensus 14 kI~ig--~D~~g~~lk~~l~~~l~~~g~~v~d~g~~--~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~ 80 (309)
||++- .+-.|-.+.+.+++.|++.|.+|+..... +-.|+...+.+.-.. + ..+|++|+.+.
T Consensus 140 ~v~il~~d~~~g~~~~~~~~~~l~~~G~~vv~~~~~~~~~~D~s~~i~~i~~~----~--~d~v~~~~~~~ 204 (347)
T cd06336 140 KVALLGPNDAYGQPWVAAYKAAWEAAGGKVVSEEPYDPGTTDFSPIVTKLLAE----K--PDVIFLGGPSP 204 (347)
T ss_pred eEEEEccCCchhHHHHHHHHHHHHHcCCEEeeecccCCCCcchHHHHHHHHhc----C--CCEEEEcCCCc
Confidence 44443 34455578899999999999999864332 124554444433332 2 46899999887
No 292
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=26.11 E-value=1.4e+02 Score=28.11 Aligned_cols=39 Identities=21% Similarity=0.092 Sum_probs=25.1
Q ss_pred CcchhHHHHHHhhcCCCCCCcceEEEEecC-chhhhh--hhcCCCceE
Q 021698 49 YYSIGAEVGRRVSSSDSSETTTRGLVACGT-GVGVAI--FANKNPGVF 93 (309)
Q Consensus 49 y~~~a~~va~~v~~~~~~~~~~~gi~~cgt-G~G~~i--~aNK~~gir 93 (309)
..+.+....+.|.+ |++| ++ +||. ..|-.| +.+|.+||+
T Consensus 72 ~~~s~~~a~~lv~~----G~aD-~~-vsg~~~T~a~l~~~l~~~~Gi~ 113 (294)
T TIGR02706 72 PKKAALLAVRLVST----GKAD-ML-MKGLVDTATFLRSVLNKEVGLR 113 (294)
T ss_pred cHHHHHHHHHHHHC----CCCC-EE-EeCCcCHHHHHHHHhhhccCCC
Confidence 33445566677777 8887 33 3555 666555 567888886
No 293
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=25.90 E-value=1.2e+02 Score=25.96 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=28.6
Q ss_pred HhhcCcceeeecccccCHHHHHHHHHHHhcCCCCC
Q 021698 107 RSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKA 141 (309)
Q Consensus 107 r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~ 141 (309)
..|+|-|.+-.-+..++.+..+++++.+-..+|.+
T Consensus 61 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 95 (188)
T TIGR00678 61 GNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQES 95 (188)
T ss_pred CCCCcEEEeccccCcCCHHHHHHHHHHHccCcccC
Confidence 45677788877777789999999999998888875
No 294
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=25.61 E-value=2.9e+02 Score=27.74 Aligned_cols=98 Identities=16% Similarity=0.142 Sum_probs=58.3
Q ss_pred CCCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-C--C--------cchhHHHHHHhhcCC------CCCCcceE
Q 021698 10 PHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-D--Y--------YSIGAEVGRRVSSSD------SSETTTRG 72 (309)
Q Consensus 10 ~~~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-~--y--------~~~a~~va~~v~~~~------~~~~~~~g 72 (309)
.+++||++-+-|..- -..+.+.|+++|.+|+.+..+ | + +.-...+.+.|.+.. -+|.+||-
T Consensus 176 ~~~lkVv~d~~nGaa--~~~~~~ll~~lG~~vv~~~~~pDg~fp~~~p~p~~~~~~~l~~~v~~~~aDlgia~DgDaDR~ 253 (464)
T COG1109 176 LRGLKVVVDCANGAA--GLVAPRLLKELGAEVVSINCDPDGLFPNINPNPGETELLDLAKAVKEHGADLGIAFDGDADRL 253 (464)
T ss_pred cCCcEEEEECCCCch--hHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCccHHHHHHHHHhcCCCEEEEecCCCceE
Confidence 455899999999652 245667778899999988753 1 1 112235666665521 16888888
Q ss_pred EEEecCch-------hh----hhhhc-CCCceEEEEeCCHHHHHHHHhh
Q 021698 73 LVACGTGV-------GV----AIFAN-KNPGVFATTCLTPADALNTRSI 109 (309)
Q Consensus 73 i~~cgtG~-------G~----~i~aN-K~~giraa~~~~~~~A~~~r~h 109 (309)
++++..|. +. .+... +.+.|...+..+......++.+
T Consensus 254 ~~vd~~G~~~~Gd~i~~lla~~l~~~~~~~~vV~tv~ss~~~~~i~~~~ 302 (464)
T COG1109 254 IVVDERGNFVDGDQILALLAKYLLEKGKLPTVVTTVMSSLALEKIAKKL 302 (464)
T ss_pred EEEcCCCCEeCccHHHHHHHHHHHhcCCCCeEEEecccchhHHHHHHHc
Confidence 88888772 11 22222 2224666666665555555543
No 295
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=25.52 E-value=2.9e+02 Score=27.58 Aligned_cols=67 Identities=15% Similarity=0.137 Sum_probs=39.4
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-C--Cc------chhHHHHHHhhcCCC------CCCcceEEEE
Q 021698 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-D--YY------SIGAEVGRRVSSSDS------SETTTRGLVA 75 (309)
Q Consensus 11 ~~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-~--y~------~~a~~va~~v~~~~~------~~~~~~gi~~ 75 (309)
+++||++-+-|..- ...+...|++.|.+|+-+-.+ | ++ ..=..+.+.|.+..+ +|.+||-+++
T Consensus 174 ~~lkVvvD~~nGa~--~~~~~~ll~~lG~~v~~i~~~~dg~~~~~~~~~~~~e~l~~~v~~~~adlGia~DgDgDR~~vv 251 (446)
T PRK14324 174 KGLRIVLDTANGAA--YKVAPTVFSELGADVIVINDEPNGFNINENCGALHPENLAQEVKRYRADIGFAFDGDADRLVVV 251 (446)
T ss_pred CCCEEEEECCCchH--HHHHHHHHHHcCCeEEEECCCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCceEEEE
Confidence 57899999888443 456667778889998865332 1 11 112345666655211 4555565556
Q ss_pred ecCc
Q 021698 76 CGTG 79 (309)
Q Consensus 76 cgtG 79 (309)
...|
T Consensus 252 d~~G 255 (446)
T PRK14324 252 DEKG 255 (446)
T ss_pred CCCC
Confidence 5555
No 296
>PLN02895 phosphoacetylglucosamine mutase
Probab=25.46 E-value=1.6e+02 Score=30.64 Aligned_cols=37 Identities=24% Similarity=0.452 Sum_probs=32.6
Q ss_pred CCcEEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCC
Q 021698 11 HPLKIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTS 47 (309)
Q Consensus 11 ~~mkI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~ 47 (309)
.+.+|+||-|- .|-.|.+++.+-|...|.+|+|+|.-
T Consensus 126 ~~~~V~vG~DtR~Ss~~l~~a~~~gl~~~G~~v~d~G~~ 164 (562)
T PLN02895 126 PPAEVLLGRDTRPSGPALLAAALKGVRAIGARAVDMGIL 164 (562)
T ss_pred cCCEEEEEecCCCCHHHHHHHHHHHHHHCCCCEEEeCcC
Confidence 34689999995 67899999999999999999999963
No 297
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=24.97 E-value=89 Score=28.12 Aligned_cols=32 Identities=22% Similarity=0.166 Sum_probs=27.1
Q ss_pred EEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC
Q 021698 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT 46 (309)
Q Consensus 14 kI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~ 46 (309)
||+|-+|+.+.+.+ .|.+.|+++|+++.=+..
T Consensus 1 ~~~~~~~~~~~~~~-~l~~a~~~~g~~~~~~~~ 32 (277)
T TIGR00768 1 KLAILYDRIRLDEK-MLKEAAEELGIDYKVVTP 32 (277)
T ss_pred CEEEEEcCCCHHHH-HHHHHHHHcCCceEEEEh
Confidence 69999999999664 899999999998876654
No 298
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=24.92 E-value=3.3e+02 Score=21.08 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=24.1
Q ss_pred HHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhc
Q 021698 28 DALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSS 62 (309)
Q Consensus 28 ~~l~~~l~~~g~~v~d~g~~~y~~~a~~va~~v~~ 62 (309)
..|..+|++.||+|..++.+..+ ..+.+.+.+
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~---~~l~~~~~~ 49 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPP---EELVEALRA 49 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-H---HHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEECCCCCH---HHHHHHHhc
Confidence 67889999999999998876544 556666665
No 299
>PRK01215 competence damage-inducible protein A; Provisional
Probab=24.60 E-value=1.2e+02 Score=28.34 Aligned_cols=80 Identities=13% Similarity=0.072 Sum_probs=49.4
Q ss_pred HHHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCCceEEEEeCCHHHHHH
Q 021698 28 DALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALN 105 (309)
Q Consensus 28 ~~l~~~l~~~g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~giraa~~~~~~~A~~ 105 (309)
..|.+.|++.|++|....+ ++..++...+.+... .+|.-|+-.|+|.|- |..+.+-
T Consensus 26 ~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~------~~DlVIttGG~g~t~----------------dD~t~ea 83 (264)
T PRK01215 26 SWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAID------RADVVVSTGGLGPTY----------------DDKTNEG 83 (264)
T ss_pred HHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhc------CCCEEEEeCCCcCCh----------------hhhHHHH
Confidence 3567778999999988774 456666666666543 346666665665442 2233333
Q ss_pred HHhhcCcceeeecccccCHHHHHHHHHHHhc
Q 021698 106 TRSINNCNVLAVSGMSTSKESAVEILDTWLK 136 (309)
Q Consensus 106 ~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~ 136 (309)
.++ ++|-.+...+.+.+.++.|+.
T Consensus 84 ia~-------~~g~~l~~~~e~~~~l~~~~~ 107 (264)
T PRK01215 84 FAK-------ALGVELELNEDALRMILEKYE 107 (264)
T ss_pred HHH-------HhCCCCCCCHHHHHHHHHHHH
Confidence 222 245567777777777777765
No 300
>PRK03670 competence damage-inducible protein A; Provisional
Probab=24.51 E-value=1.1e+02 Score=28.49 Aligned_cols=81 Identities=16% Similarity=0.113 Sum_probs=51.3
Q ss_pred HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCCceEEEEeCCHHHHHHH
Q 021698 29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNT 106 (309)
Q Consensus 29 ~l~~~l~~~g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~giraa~~~~~~~A~~~ 106 (309)
.|.+.|.+.|++|..... ++...+...+.+...+ .+|.-|+..|+|.+ .|..+.+-.
T Consensus 24 ~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~-----~~DlVIttGGlGpt----------------~dD~T~eav 82 (252)
T PRK03670 24 FIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSR-----KPEVLVISGGLGPT----------------HDDVTMLAV 82 (252)
T ss_pred HHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhC-----CCCEEEECCCccCC----------------CCCchHHHH
Confidence 466778999999988765 4555566655554432 34544444444432 344444444
Q ss_pred HhhcCcceeeecccccCHHHHHHHHHHHhcC
Q 021698 107 RSINNCNVLAVSGMSTSKESAVEILDTWLKT 137 (309)
Q Consensus 107 r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~ 137 (309)
++ ++|-.++--+.+.+.++.|+..
T Consensus 83 a~-------a~g~~l~~~~e~~~~i~~~~~~ 106 (252)
T PRK03670 83 AE-------ALGRELVLCEDCLERIKEFYEE 106 (252)
T ss_pred HH-------HhCCCCcCCHHHHHHHHHHHHH
Confidence 43 4677788888899999988764
No 301
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=24.50 E-value=1.7e+02 Score=26.85 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=38.9
Q ss_pred hhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCCce--EEEEeCCHHHHHHHHhhcCcceeeecccc
Q 021698 52 IGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGV--FATTCLTPADALNTRSINNCNVLAVSGMS 121 (309)
Q Consensus 52 ~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~gi--raa~~~~~~~A~~~r~hNnaNvl~~g~~~ 121 (309)
+|.++++.|.+ | --|++++ |-=+...|.-.+.. .-.+..+...|.....++|.+|+.+||.+
T Consensus 82 IA~~Aa~lI~~----g---~tIflD~-GtT~~~la~~L~~~~~ltvvTnsl~i~~~l~~~~~~~villGG~~ 145 (252)
T PRK10681 82 AAQLAATLVEP----N---QTLFFDC-GTTTPWIIEAIDNELPFTAVCYSLNTFLALQEKPHCRAILCGGEF 145 (252)
T ss_pred HHHHHHhhcCC----C---CEEEEEC-CccHHHHHHhcCCCCCeEEEECCHHHHHHHhhCCCCEEEEECcEE
Confidence 55566666554 2 2355543 33444455555443 34556677778777778999999999995
No 302
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=23.93 E-value=3.2e+02 Score=27.35 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=24.6
Q ss_pred CCcEEEEEeCcc-cHHHHHHHHHHHHhCCC--cEEEec
Q 021698 11 HPLKIIAGADSF-GAELKDALVSHLRSLNI--DVEDLG 45 (309)
Q Consensus 11 ~~mkI~ig~D~~-g~~lk~~l~~~l~~~g~--~v~d~g 45 (309)
+.+||++-+-|. |..+-..|.+.|++.|. +|+.+.
T Consensus 169 ~~lkVvvD~~~G~~~~~~~~l~~~l~~lG~~v~v~~~~ 206 (456)
T PRK15414 169 TPLKLVINSGNGAAGPVVDAIEARFKALGAPVELIKVH 206 (456)
T ss_pred CCCEEEEECCCCcchhhHHHHHHHHHhcCCCeEEEEee
Confidence 578999998773 44555666677999998 554443
No 303
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=23.92 E-value=3e+02 Score=25.51 Aligned_cols=65 Identities=9% Similarity=-0.007 Sum_probs=42.8
Q ss_pred cEEEEEeCcc--cHHHHHHHHHHHHhCCCcEEEecCC--CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhh
Q 021698 13 LKIIAGADSF--GAELKDALVSHLRSLNIDVEDLGTS--DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVA 83 (309)
Q Consensus 13 mkI~ig~D~~--g~~lk~~l~~~l~~~g~~v~d~g~~--~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~ 83 (309)
.||++-.+.. |..+.+.+++.|++.|.+|+.-... +-.|+...+.+.... + . ..|++++.+-...
T Consensus 133 ~~v~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~l~~~----~-p-d~v~~~~~~~~~~ 201 (333)
T cd06358 133 RRWYLIGNDYVWPRGSLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAAS----G-A-DAVLSTLVGQDAV 201 (333)
T ss_pred CeEEEEeccchhhHHHHHHHHHHHHHcCCEEeeeeeecCChHHHHHHHHHHHHc----C-C-CEEEEeCCCCchH
Confidence 4777765443 5588899999999999999874432 235666666655443 3 2 3777777764443
No 304
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=23.80 E-value=1e+02 Score=26.23 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=19.7
Q ss_pred eEEEecCCcEEEECCCCcEEEE
Q 021698 253 ERFDLTVGDYLFTPAGDVHRVK 274 (309)
Q Consensus 253 ~~~~L~pGd~i~iP~g~~H~~~ 274 (309)
....|.||+++.+.|+.+|+..
T Consensus 106 ~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 106 ETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cEEEeCCCeEEEECCcccccCC
Confidence 3578999999999999999986
No 305
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=23.67 E-value=1.7e+02 Score=26.84 Aligned_cols=80 Identities=9% Similarity=0.057 Sum_probs=46.0
Q ss_pred hhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCCce--EEEEeCCHHHHHHHHh-hcCcceeeecccc-------
Q 021698 52 IGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGV--FATTCLTPADALNTRS-INNCNVLAVSGMS------- 121 (309)
Q Consensus 52 ~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~gi--raa~~~~~~~A~~~r~-hNnaNvl~~g~~~------- 121 (309)
+|.++++.|.+ | --|++ ++|-=....|.-+|.. .-.++++...|..... .|+.||+++||.+
T Consensus 81 IA~~Aa~~I~~----g---~tIfl-d~GtT~~~la~~L~~~~~ltVvTnsl~ia~~l~~~~~~~~v~l~GG~~~~~~~~~ 152 (256)
T PRK10434 81 IAEAAVSLIHD----G---DSIIL-DAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSASF 152 (256)
T ss_pred HHHHHHhhCCC----C---CEEEE-cCcHHHHHHHHHhccCCCeEEEECCHHHHHHHhhCCCCCEEEEECCEEeCCCCeE
Confidence 55555555554 2 23444 4454445556655543 4566777777765555 4457999999984
Q ss_pred cCHHHHHHHHHHH-hcCCCC
Q 021698 122 TSKESAVEILDTW-LKTPFK 140 (309)
Q Consensus 122 ~~~~~a~~i~~~~-l~~~f~ 140 (309)
+|+.. .+.++.| ++.-|-
T Consensus 153 ~G~~a-~~~l~~~~~D~afi 171 (256)
T PRK10434 153 HGQLA-ENAFEHFTFDKLFI 171 (256)
T ss_pred ECHHH-HHHHHhCcCCEEEE
Confidence 45544 4455544 333343
No 306
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=23.38 E-value=62 Score=26.44 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=29.2
Q ss_pred EEEEEeCcccH-HHHHHHHHHHHhCCCcEEEecC
Q 021698 14 KIIAGADSFGA-ELKDALVSHLRSLNIDVEDLGT 46 (309)
Q Consensus 14 kI~ig~D~~g~-~lk~~l~~~l~~~g~~v~d~g~ 46 (309)
-|+||.-..+. .+-.++.++|++.|++|+++-|
T Consensus 61 ivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m~T 94 (117)
T cd05126 61 VIVIGTGQSGALKVPPETVEKLEKRGVEVLVLPT 94 (117)
T ss_pred EEEEcCCCCccccCCHHHHHHHHhcCCEEEEcCh
Confidence 69999999875 8899999999999999998766
No 307
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=23.28 E-value=93 Score=24.08 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=23.5
Q ss_pred EEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC
Q 021698 14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS 47 (309)
Q Consensus 14 kI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~ 47 (309)
+|.+|=.-..-+-.+.|.+.|++.||++.|+..+
T Consensus 51 ~vlvgi~v~~~~~~~~l~~~L~~~gy~~~dls~n 84 (91)
T PF00585_consen 51 RVLVGIEVPDAEDLEELIERLKALGYPYEDLSDN 84 (91)
T ss_dssp EEEEEEE-SSTHHHHHHHHHHTSSS-EEECTTT-
T ss_pred eEEEEEEeCCHHHHHHHHHHHHHcCCCeEECCCC
Confidence 5666544443344799999999999999998754
No 308
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.23 E-value=3.1e+02 Score=23.18 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=38.1
Q ss_pred EEEEeCcccHHHHHHHHHHHH-hCCCcEEEecCC-------CCcchhHHHHHHhhcCCCCCCcceEEEEecCc
Q 021698 15 IIAGADSFGAELKDALVSHLR-SLNIDVEDLGTS-------DYYSIGAEVGRRVSSSDSSETTTRGLVACGTG 79 (309)
Q Consensus 15 I~ig~D~~g~~lk~~l~~~l~-~~g~~v~d~g~~-------~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG 79 (309)
|++--|.....+...+.++|. ..+++|++.|.. ++.+....+-+.|.+ ...+..|+.+||-
T Consensus 2 il~iGDS~~~g~~~~l~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~l~~----~~pd~vii~~G~N 70 (200)
T cd01829 2 VLVIGDSLAQGLAPGLLRALADNPGIRVINRSKGSSGLVRPDFFDWPEKLKELIAE----EKPDVVVVFLGAN 70 (200)
T ss_pred EEEEechHHHHHHHHHHHHhccCCCcEEEECccccccccCCCcCCHHHHHHHHHhc----CCCCEEEEEecCC
Confidence 444556555556666666665 457999997653 244555666666766 5667666666654
No 309
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=23.20 E-value=48 Score=26.44 Aligned_cols=36 Identities=31% Similarity=0.290 Sum_probs=26.9
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC
Q 021698 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT 46 (309)
Q Consensus 11 ~~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~ 46 (309)
++=-|+||.-.....+-.+++++|+++|+.|+=+-|
T Consensus 53 ~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T 88 (110)
T PF04430_consen 53 KPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDT 88 (110)
T ss_dssp S-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-H
T ss_pred CCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECH
Confidence 334699999888888899999999999988885544
No 310
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=23.14 E-value=5.1e+02 Score=24.49 Aligned_cols=113 Identities=15% Similarity=0.070 Sum_probs=69.1
Q ss_pred EEEEeCcccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCCc-eE
Q 021698 15 IIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPG-VF 93 (309)
Q Consensus 15 I~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~g-ir 93 (309)
++|-.=| |.+ .++.+.|+++|++|+|-.+ .|.--..+.++...+ +...-|++.-.+=---++.+-+-. =.
T Consensus 66 ~ViirAH-Gv~--~~~~~~l~~~g~~viDaTC-P~V~k~~~~v~~~~~-----~Gy~iviiG~~~HpEv~gi~g~~~~~~ 136 (281)
T PF02401_consen 66 TVIIRAH-GVP--PEVYEELKERGLEVIDATC-PFVKKIHKIVRKYAK-----EGYQIVIIGDKNHPEVIGILGYAPEEK 136 (281)
T ss_dssp EEEE-TT------HHHHHHHHHTTEEEEE----HHHHHHHHHHHHHHH-----CT-EEEEES-TT-HHHHHHHCCHHTS-
T ss_pred EEEEeCC-CCC--HHHHHHHHHcCCEEEECCC-hhHHHHHHHHHHHHh-----cCCEEEEECCCCCceEEEecccccCCc
Confidence 4555555 333 5677888999999999665 233344555555554 233555665556544454444444 67
Q ss_pred EEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhc
Q 021698 94 ATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLK 136 (309)
Q Consensus 94 aa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~ 136 (309)
+.++.+..++..-...++-++..+..=....+.-.+|++....
T Consensus 137 ~~vv~~~~~~~~l~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~ 179 (281)
T PF02401_consen 137 AIVVESPEDVEKLPISDPKKVAVVSQTTQSVEKFEEIVEALKK 179 (281)
T ss_dssp EEEESSHHHHHHGGGSSTTCEEEEE-TTS-HHHHHHHHHHHHH
T ss_pred eEEeCChhhhcccCCCCCCeEEEEEeecccHHHHHHHHHHHHH
Confidence 8899999999888777778999999999998888887776543
No 311
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=22.87 E-value=3.2e+02 Score=24.19 Aligned_cols=60 Identities=10% Similarity=0.140 Sum_probs=40.0
Q ss_pred EEEEeCcccHHH-----------------HHHHHHHHHhCCCcEEEecCC-CCcchhHHHHHHhhcCCCCCCcceEEEEe
Q 021698 15 IIAGADSFGAEL-----------------KDALVSHLRSLNIDVEDLGTS-DYYSIGAEVGRRVSSSDSSETTTRGLVAC 76 (309)
Q Consensus 15 I~ig~D~~g~~l-----------------k~~l~~~l~~~g~~v~d~g~~-~y~~~a~~va~~v~~~~~~~~~~~gi~~c 76 (309)
.+||+|.+...| .+..+++++++|.+++.+-++ |+.|.-.++-..+.. .++.-+++.
T Consensus 20 ~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~~~eKD~TD~e~Al~~~~~~-----~~~~i~i~G 94 (203)
T TIGR01378 20 LVIAADGGANHLLKLGLTPDLIVGDFDSIDEEELDFYKKAGVKIIVFPPEKDTTDLELALKYALER-----GADEITILG 94 (203)
T ss_pred EEEEEChHHHHHHHCCCCCCEEEeCcccCCHHHHHHHHHcCCceEEcCCCCCCCHHHHHHHHHHHC-----CCCEEEEEc
Confidence 567888876544 567788888889888887664 788876666555543 334444444
Q ss_pred cCc
Q 021698 77 GTG 79 (309)
Q Consensus 77 gtG 79 (309)
+||
T Consensus 95 a~G 97 (203)
T TIGR01378 95 ATG 97 (203)
T ss_pred CCC
Confidence 455
No 312
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=22.52 E-value=5.1e+02 Score=22.45 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=33.9
Q ss_pred cccHHHHHHHHHHHHhCCCcEEEecCCCCcc-hhHHHHHHhhcCCCCCCcceEEEEecCchh
Q 021698 21 SFGAELKDALVSHLRSLNIDVEDLGTSDYYS-IGAEVGRRVSSSDSSETTTRGLVACGTGVG 81 (309)
Q Consensus 21 ~~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~-~a~~va~~v~~~~~~~~~~~gi~~cgtG~G 81 (309)
+.=..+.+.+++.+++.||+++=+-+. |.. -...+.+.+.+ .. --||++++....
T Consensus 12 ~~~~~~~~~i~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~----~~-vdgiii~~~~~~ 67 (267)
T cd06284 12 PFFSEILKGIEDEAREAGYGVLLGDTR-SDPEREQEYLDLLRR----KQ-ADGIILLDGSLP 67 (267)
T ss_pred ccHHHHHHHHHHHHHHcCCeEEEecCC-CChHHHHHHHHHHHH----cC-CCEEEEecCCCC
Confidence 344578999999999999998754332 322 22344445554 23 468888765433
No 313
>PRK07742 phosphate butyryltransferase; Validated
Probab=22.51 E-value=1.7e+02 Score=27.65 Aligned_cols=35 Identities=17% Similarity=0.070 Sum_probs=21.8
Q ss_pred hHHHHHHhhcCCCCCCcceEEEEecCchhhhh---hhcCCCceE
Q 021698 53 GAEVGRRVSSSDSSETTTRGLVACGTGVGVAI---FANKNPGVF 93 (309)
Q Consensus 53 a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i---~aNK~~gir 93 (309)
+....+.|.+ |++| + ++||.=-|-.+ +.+|.+|++
T Consensus 79 ~~~a~~lV~~----G~aD-~-lvsG~~tta~~~~~~l~~~~Gi~ 116 (299)
T PRK07742 79 AELAVKAVRN----GEAD-V-LMKGNVPTANILKAVLNKEWGLR 116 (299)
T ss_pred HHHHHHHHHC----CCCC-E-EEECCcCHHHHHHHHhccccCCC
Confidence 4555667776 8887 3 33654444445 567788875
No 314
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=22.51 E-value=3.9e+02 Score=26.40 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=40.8
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-C--C------cchhHHHHHHhhcCCC------CCCcceEEEE
Q 021698 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-D--Y------YSIGAEVGRRVSSSDS------SETTTRGLVA 75 (309)
Q Consensus 11 ~~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-~--y------~~~a~~va~~v~~~~~------~~~~~~gi~~ 75 (309)
+++||++-+-|..- ...+.+.|++.|.+|+-+-.+ | + ++.-..+.+.|.+..+ +|.+||-+++
T Consensus 168 ~~lkVvvD~~nG~~--~~~~~~ll~~lg~~v~~in~~~dg~~~~~~~~~~~~~~l~~~v~~~~adlGia~DgDgDR~~~v 245 (434)
T cd05802 168 SGLKIVLDCANGAA--YKVAPEVFRELGAEVIVINNAPDGLNINVNCGSTHPESLQKAVLENGADLGIAFDGDADRVIAV 245 (434)
T ss_pred CCCEEEEECCCchH--HHHHHHHHHHcCCeEEEecCCCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEEEcCCCceEEEE
Confidence 56899998888544 345777778889999866432 1 1 1223456666655211 4556666666
Q ss_pred ecCc
Q 021698 76 CGTG 79 (309)
Q Consensus 76 cgtG 79 (309)
+..|
T Consensus 246 d~~G 249 (434)
T cd05802 246 DEKG 249 (434)
T ss_pred CCCC
Confidence 6665
No 315
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=22.44 E-value=57 Score=29.37 Aligned_cols=43 Identities=28% Similarity=0.448 Sum_probs=32.0
Q ss_pred CcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcC----CCceEEEEeC
Q 021698 49 YYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANK----NPGVFATTCL 98 (309)
Q Consensus 49 y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK----~~giraa~~~ 98 (309)
|+.+|.++++.+... | -+++||.|.|+.=++|| .-|...++..
T Consensus 32 ~~~~a~~lg~~la~~---g----~~V~tGG~~GiMea~~~gA~~~gg~~vGi~p 78 (205)
T COG1611 32 YYELARELGRELAKR---G----LLVITGGGPGVMEAVARGALEAGGLVVGILP 78 (205)
T ss_pred HHHHHHHHHHHHHhC---C----cEEEeCCchhhhhHHHHHHHHcCCeEEEecC
Confidence 888999999999872 2 78889999998888776 3444455443
No 316
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=22.39 E-value=60 Score=28.67 Aligned_cols=96 Identities=10% Similarity=0.127 Sum_probs=59.7
Q ss_pred HHHHHHHhCCCcEEEecCC-------------CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCCceEEE
Q 021698 29 ALVSHLRSLNIDVEDLGTS-------------DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFAT 95 (309)
Q Consensus 29 ~l~~~l~~~g~~v~d~g~~-------------~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~giraa 95 (309)
.+.+.+++.|+.|+-+... |+...+..+++.+.+. ......|++-....+.....++..|++.+
T Consensus 71 ~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~---~~~~~~v~~~~~~~~~~~~~~r~~g~~~~ 147 (257)
T PF13407_consen 71 PFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEK---LGAKGKVLILSGSPGNPNTQERLEGFRDA 147 (257)
T ss_dssp HHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHH---HTTTEEEEEEESSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHH---hccCceEEeccCCCCchHHHHHHHHHHHH
Confidence 3445588899999987654 2556888888888763 22224555444555666666776665432
Q ss_pred EeCCHHHHHHHHhhcCcceeeec-ccccCHHHHHHHHHHHhcC
Q 021698 96 TCLTPADALNTRSINNCNVLAVS-GMSTSKESAVEILDTWLKT 137 (309)
Q Consensus 96 ~~~~~~~A~~~r~hNnaNvl~~g-~~~~~~~~a~~i~~~~l~~ 137 (309)
+.. +++.+++.-- .--...+.+.+.+..||..
T Consensus 148 ---------l~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~ 180 (257)
T PF13407_consen 148 ---------LKE-YPGVEIVDEYEYTDWDPEDARQAIENLLQA 180 (257)
T ss_dssp ---------HHH-CTTEEEEEEEEECTTSHHHHHHHHHHHHHH
T ss_pred ---------Hhh-cceeeeeeeeeccCCCHHHHHHHHHHhhhc
Confidence 222 6677777611 1136777788888888873
No 317
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=22.36 E-value=1.1e+02 Score=28.04 Aligned_cols=30 Identities=23% Similarity=0.160 Sum_probs=22.4
Q ss_pred cEEEEEeCcccH---HHHHHHHHHHHhCCCcEEEe
Q 021698 13 LKIIAGADSFGA---ELKDALVSHLRSLNIDVEDL 44 (309)
Q Consensus 13 mkI~ig~D~~g~---~lk~~l~~~l~~~g~~v~d~ 44 (309)
|||++..++.|+ .---.|.++| +||+|.=+
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~ 33 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFI 33 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEE
Confidence 899999999998 3345677777 37887744
No 318
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=22.27 E-value=1.1e+02 Score=32.89 Aligned_cols=61 Identities=18% Similarity=0.162 Sum_probs=42.4
Q ss_pred EEcCCCcCCccccCccEEEEEEeCEEEEEEEeC----CeEEEecCCcEEE---------ECCCCcEEEEEcCCeEEE
Q 021698 219 RFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK----GERFDLTVGDYLF---------TPAGDVHRVKYYEETEFF 282 (309)
Q Consensus 219 ~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~----~~~~~L~pGd~i~---------iP~g~~H~~~n~~d~~~~ 282 (309)
.++||..+-.+-.+..++.||..|.+++. ..+ ...-.|.|||+.= +|+ .-.+++.+.++++
T Consensus 446 ~f~pge~iireGd~v~~myFI~rG~le~~-~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~~p~--t~TVralt~~el~ 519 (727)
T KOG0498|consen 446 YFTPGEYIIREGDPVTDMYFIVRGSLESI-TTDGGGFFVVAILGPGDFFGEELLTWCLDLPQ--TRTVRALTYCELF 519 (727)
T ss_pred ccCCCCeEEecCCccceeEEEEeeeEEEE-EccCCceEEEEEecCCCccchHHHHHHhcCCC--CceeehhhhhhHH
Confidence 35666666656667788999999999983 333 2567999999876 665 4456666665554
No 319
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=22.20 E-value=3.7e+02 Score=26.82 Aligned_cols=67 Identities=12% Similarity=0.037 Sum_probs=39.4
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC---CC-------cchhHHHHHHhhcCCC------CCCcceEEE
Q 021698 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS---DY-------YSIGAEVGRRVSSSDS------SETTTRGLV 74 (309)
Q Consensus 11 ~~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~---~y-------~~~a~~va~~v~~~~~------~~~~~~gi~ 74 (309)
++.||++-+-|..- ...+.+.|++.|.+|+-+..+ .+ ++.-..+.+.|.+..+ ++.+||-.+
T Consensus 164 ~~~kVvvD~~~G~~--~~~~~~il~~lg~~v~~i~~~~d~~f~~~p~p~~~~l~~l~~~v~~~~adlGia~DgD~DR~~v 241 (449)
T PRK14321 164 NSYTVVVDSGNGAG--SILSPYLQRELGNKVISLNSHPSGFFVRELEPNAKSLSMLAKTVKVLKADVGIAHDGDADRIGV 241 (449)
T ss_pred CCCEEEEECCCchH--HHHHHHHHHHcCCEEEEeCccCCCCCCCCCCCchhhHHHHHHHHHHCCCCEEEEecCCCceEEE
Confidence 56789998877442 455666778889998865432 11 1233455555554110 455566666
Q ss_pred EecCc
Q 021698 75 ACGTG 79 (309)
Q Consensus 75 ~cgtG 79 (309)
++..|
T Consensus 242 vd~~G 246 (449)
T PRK14321 242 VDDQG 246 (449)
T ss_pred ECCCC
Confidence 66565
No 320
>PF04027 DUF371: Domain of unknown function (DUF371); InterPro: IPR007171 This is an archaeal family of unknown function.; PDB: 3CBN_A.
Probab=22.19 E-value=57 Score=27.49 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=19.8
Q ss_pred EEEEEeCcccHHHHHHHHHHHHhCCCcE
Q 021698 14 KIIAGADSFGAELKDALVSHLRSLNIDV 41 (309)
Q Consensus 14 kI~ig~D~~g~~lk~~l~~~l~~~g~~v 41 (309)
.|+|.||.++-+|...|++.|+ .|-++
T Consensus 100 Tl~I~adkaA~dl~R~lV~~L~-~g~~~ 126 (132)
T PF04027_consen 100 TLMIKADKAAADLDRELVEALK-PGAEL 126 (132)
T ss_dssp EEEBS-S--GGGS-HHHHHHHH-TT-EE
T ss_pred eEEEccccchhhCCHHHHHHhc-CCCeE
Confidence 6999999999999999999999 67554
No 321
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.14 E-value=78 Score=31.05 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=31.3
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC
Q 021698 13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT 46 (309)
Q Consensus 13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~ 46 (309)
.||.+||-|......+.+.+.|+..|++|+-+-+
T Consensus 170 kriYlgs~~~ns~~~e~l~~v~aq~~I~v~~~es 203 (431)
T COG4408 170 KRIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCES 203 (431)
T ss_pred HheeeccCCCCChHHHHHHHHHHhcCCceEEcCC
Confidence 4899999999999999999999999999997754
No 322
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=22.13 E-value=3.2e+02 Score=22.80 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=41.2
Q ss_pred EEEEcCCCcCCccccCccEEEEEEeCEEEEEEEe-CCeE---EEecCCcEEEECCC-----CcEEEEEcCCeEEEEEEcC
Q 021698 217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLT-KGER---FDLTVGDYLFTPAG-----DVHRVKYYEETEFFIKWDG 287 (309)
Q Consensus 217 ~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~-~~~~---~~L~pGd~i~iP~g-----~~H~~~n~~d~~~~i~~~g 287 (309)
...+++|...-..--+...+.+|++|.+.+.... +++. ..+.|||++=..+- ..+.....+++.++.+...
T Consensus 25 ~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~~~~~~~~~~a~~~~~~~~~~~~ 104 (214)
T COG0664 25 VRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLGGDPRSASAVALTDVEVLEIPRK 104 (214)
T ss_pred eEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhcCCCccceEEEcceEEEEEecHH
Confidence 3455666444333333444678999999984222 2332 35679997765532 3445666667665544333
Q ss_pred Ccc
Q 021698 288 RWD 290 (309)
Q Consensus 288 ~~~ 290 (309)
.|.
T Consensus 105 ~~~ 107 (214)
T COG0664 105 DFL 107 (214)
T ss_pred HHH
Confidence 333
No 323
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=22.09 E-value=3.4e+02 Score=23.45 Aligned_cols=55 Identities=9% Similarity=0.149 Sum_probs=38.5
Q ss_pred CcccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCcceEEEEecCc
Q 021698 20 DSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTG 79 (309)
Q Consensus 20 D~~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG 79 (309)
+...-.+.+.+.+.+++.||+++-+-+...++......+.+.. . .--||+++++.
T Consensus 11 ~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~----~-~vdgvi~~~~~ 65 (267)
T cd01536 11 NPFWQAMNKGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIA----Q-GVDGIIISPVD 65 (267)
T ss_pred CHHHHHHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHH----c-CCCEEEEeCCC
Confidence 3444578899999999999998877665545555666666655 3 34678777654
No 324
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=22.02 E-value=2.1e+02 Score=30.04 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=31.9
Q ss_pred CcEEEEEeCc--ccHHHHHHHHHHHH-hCCCcEEEecCC
Q 021698 12 PLKIIAGADS--FGAELKDALVSHLR-SLNIDVEDLGTS 47 (309)
Q Consensus 12 ~mkI~ig~D~--~g~~lk~~l~~~l~-~~g~~v~d~g~~ 47 (309)
+-+|+||-|- +|-.|.+++.+-|. ..|.+|+|+|.-
T Consensus 152 ~~~V~vGrDtR~Ss~~L~~al~~gl~~~~G~~v~d~G~~ 190 (585)
T PTZ00302 152 KAKVHVGRDTRPSSPELVSALLRGLKLLIGSNVRNFGIV 190 (585)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHhcCCcEEEeCCC
Confidence 4579999994 67799999999999 999999999974
No 325
>PHA02984 hypothetical protein; Provisional
Probab=21.91 E-value=3.8e+02 Score=25.43 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=30.9
Q ss_pred EEEEeCEEEEEEEeCC--eEEEecCCcEEEECCCCcEEEEEc
Q 021698 237 LVVLEGKKSVWNLTKG--ERFDLTVGDYLFTPAGDVHRVKYY 276 (309)
Q Consensus 237 vyVl~G~l~v~~~~~~--~~~~L~pGd~i~iP~g~~H~~~n~ 276 (309)
+.+|.|+.++....++ .+..++.|+.+.+.-+..|+....
T Consensus 97 vlCl~G~~~I~~~~~~~~is~~I~kGeaf~md~~t~h~i~T~ 138 (286)
T PHA02984 97 VLCLNGKTSIECFNKGSKITNTIKKGEAFTLNLKTKYVTTTK 138 (286)
T ss_pred EEEcCCeEEEEEecCCceeeeEEecCceEEEEccceEEEEeC
Confidence 4579999998533333 347899999999999999998554
No 326
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=21.87 E-value=3.9e+02 Score=26.52 Aligned_cols=67 Identities=18% Similarity=0.158 Sum_probs=39.9
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-C--C------cchhHHHHHHhhcCCC------CCCcceEEEE
Q 021698 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-D--Y------YSIGAEVGRRVSSSDS------SETTTRGLVA 75 (309)
Q Consensus 11 ~~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-~--y------~~~a~~va~~v~~~~~------~~~~~~gi~~ 75 (309)
+++||++-+-|..- ...+.+.|++.|++|+-+-.+ | + ++.-..+.+.|.+..+ +|.+||-+++
T Consensus 172 ~~lkvvvD~~nG~~--~~~~~~ll~~lg~~v~~in~~~dg~~~~~~~~~~~~~~l~~~v~~~~adlGia~DgDaDR~~~v 249 (448)
T PRK14316 172 SGLKVALDCANGAT--SSLAPRLFADLGADVTVIGTSPDGLNINDGVGSTHPEALQELVVEKGADLGLAFDGDADRLIAV 249 (448)
T ss_pred CCCEEEEECCCchh--hHHHHHHHHHcCCeEEEEccCCCCCCCCCCCCCCCHHHHHHHHhhcCCCEEEEEcCCCceEEEE
Confidence 46799998877443 456777788899999865332 1 1 1222456666655211 4555565556
Q ss_pred ecCc
Q 021698 76 CGTG 79 (309)
Q Consensus 76 cgtG 79 (309)
..+|
T Consensus 250 d~~G 253 (448)
T PRK14316 250 DENG 253 (448)
T ss_pred CCCC
Confidence 5555
No 327
>cd00515 HAM1 NTPase/HAM1. This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A Ham1-related protein from Methanococcus jannaschii is a novel NTPase that has been shown to hydrolyze nonstandard nucleotides such as XTP to XMP and ITP to IMP, but not the standard nucleotides, in the presence of Mg or Mn ions. The enzyme exists as a homodimer. The HAM1 protein may be acting as an NTPase by hydrolyzing the HAP triphosphate.
Probab=21.86 E-value=80 Score=27.74 Aligned_cols=64 Identities=19% Similarity=0.236 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCCcEEEec--CC------CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCCceEEEEe
Q 021698 28 DALVSHLRSLNIDVEDLG--TS------DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTC 97 (309)
Q Consensus 28 ~~l~~~l~~~g~~v~d~g--~~------~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~giraa~~ 97 (309)
+++++.|...+++|+.+. .+ ||.+.|..=|+.+.+ ....-++++-||+=+. +.|-+|||+.+..
T Consensus 12 ~E~~~il~~~~i~v~~~~~~~~~~E~~~s~~enA~~KA~~a~~-----~~~~pviadDsGL~i~-aL~g~PG~ys~r~ 83 (183)
T cd00515 12 KEFKEILAPFGIEVVSLKDIIDIEETGSTFEENALLKARAAAE-----ALGLPVLADDSGLCVD-ALNGFPGVYSARF 83 (183)
T ss_pred HHHHHHHhhcCcEEEEcCcCCCCCCCCCCHHHHHHHHHHHHHH-----HHCCCEEEeccEEEEe-ccCCCCchhhhhh
Confidence 456677777788887766 21 455566555555543 1224689999986554 5799999976543
No 328
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=21.80 E-value=1.3e+02 Score=28.83 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=53.3
Q ss_pred HHHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhh----hhhcCCCc-e-EEEEeCC
Q 021698 28 DALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVA----IFANKNPG-V-FATTCLT 99 (309)
Q Consensus 28 ~~l~~~l~~~g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~----i~aNK~~g-i-raa~~~~ 99 (309)
..|.+.|++.|+++.+.+. +|...+...+.+.+.+ .+|.-|+-.|||.|-. =+..+.-+ | +-.+--.
T Consensus 182 ~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~-----g~DlIItTGGtsvg~~D~tp~Ai~~~G~ei~~~Gv~v~ 256 (312)
T cd03522 182 PVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEA-----GAELLILTGGASVDPDDVTPAAIRAAGGEVIRYGMPVD 256 (312)
T ss_pred HHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcC-----CCCEEEEeCCcccCCcchHHHHHHhcCceEEEeeeccc
Confidence 3567778899999999875 4555565555555432 2565555555555432 01111100 1 1111111
Q ss_pred HHHHHHHHhhcCcceeeecccccCHHH-HHHHHHHHhcC
Q 021698 100 PADALNTRSINNCNVLAVSGMSTSKES-AVEILDTWLKT 137 (309)
Q Consensus 100 ~~~A~~~r~hNnaNvl~~g~~~~~~~~-a~~i~~~~l~~ 137 (309)
|-.-.+.-..++.=|++|++.-.+... ..+++--.+-.
T Consensus 257 PG~~l~~g~~~~~pVigLPG~p~s~~~t~~d~VLprlla 295 (312)
T cd03522 257 PGNLLLLGYLGGVPVIGLPGCARSPKLNGFDLVLPRLLA 295 (312)
T ss_pred CCceEEEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHc
Confidence 111111111367778999988877754 34555444433
No 329
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=21.75 E-value=3e+02 Score=25.45 Aligned_cols=61 Identities=18% Similarity=0.127 Sum_probs=37.6
Q ss_pred EEEEE--eCcccHHHHHHHHHHHHhCCCcEEEecCCCC----cchhHHHHHHhhcCCCCCCcceEEEEecCch
Q 021698 14 KIIAG--ADSFGAELKDALVSHLRSLNIDVEDLGTSDY----YSIGAEVGRRVSSSDSSETTTRGLVACGTGV 80 (309)
Q Consensus 14 kI~ig--~D~~g~~lk~~l~~~l~~~g~~v~d~g~~~y----~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~ 80 (309)
||++- .|..|..+.+.+++.+++.|.+|.+.-...- .++. .+.+++.+ .. .+.|++++++.
T Consensus 162 ~v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~-~~l~~l~~----~~-~~vvv~~~~~~ 228 (348)
T cd06350 162 WVGLVYSDDDYGRSGLSDLEEELEKNGICIAFVEAIPPSSTEEDIK-RILKKLKS----ST-ARVIVVFGDED 228 (348)
T ss_pred EEEEEEecchhHHHHHHHHHHHHHHCCCcEEEEEEccCCCcHHHHH-HHHHHHHh----CC-CcEEEEEeCcH
Confidence 55544 3444788999999999999999986433211 2343 34444444 22 27777777663
No 330
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=21.75 E-value=1.8e+02 Score=26.75 Aligned_cols=62 Identities=10% Similarity=-0.015 Sum_probs=38.8
Q ss_pred hhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCCce--EEEEeCCHHHHHHHHhhcCcceeeecccc
Q 021698 52 IGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGV--FATTCLTPADALNTRSINNCNVLAVSGMS 121 (309)
Q Consensus 52 ~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~gi--raa~~~~~~~A~~~r~hNnaNvl~~g~~~ 121 (309)
+|.+++..|.+ | --|++.++- =....|..+|+. .-.+.++...|.....+++.+|+++||.+
T Consensus 81 IA~~Aa~~I~~----g---~tIflD~Gt-T~~~la~~L~~~~~ltVvTNsl~ia~~l~~~~~~~villGG~~ 144 (252)
T PRK10906 81 IARKVASQIPN----G---ATLFIDIGT-TPEAVAHALLNHSNLRIVTNNLNVANTLMAKEDFRIILAGGEL 144 (252)
T ss_pred HHHHHHhhCCC----C---CEEEEcCcH-HHHHHHHHhcCCCCcEEEECcHHHHHHHhhCCCCEEEEECCEE
Confidence 55666666554 2 235554433 334455555442 45556677778777778999999999984
No 331
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=21.64 E-value=1.5e+02 Score=26.05 Aligned_cols=54 Identities=13% Similarity=0.058 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCCc--EEEecCCCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhh
Q 021698 27 KDALVSHLRSLNID--VEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAI 84 (309)
Q Consensus 27 k~~l~~~l~~~g~~--v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i 84 (309)
...+++++.+.+.+ +.+.--...|+.+....+.+.+ ......++++||..|=..
T Consensus 17 a~~l~~~~~~~~~~~~~~~p~l~~~p~~a~~~l~~~i~----~~~~~~~~liGSSlGG~~ 72 (187)
T PF05728_consen 17 AQALKQYFAEHGPDIQYPCPDLPPFPEEAIAQLEQLIE----ELKPENVVLIGSSLGGFY 72 (187)
T ss_pred HHHHHHHHHHhCCCceEECCCCCcCHHHHHHHHHHHHH----hCCCCCeEEEEEChHHHH
Confidence 46788889887744 3432223455555555555554 222233999999998654
No 332
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=21.55 E-value=3.7e+02 Score=26.92 Aligned_cols=67 Identities=16% Similarity=0.111 Sum_probs=39.3
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC--------CC-cchhHHHHHHhhcCCC------CCCcceEEEE
Q 021698 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS--------DY-YSIGAEVGRRVSSSDS------SETTTRGLVA 75 (309)
Q Consensus 11 ~~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~--------~y-~~~a~~va~~v~~~~~------~~~~~~gi~~ 75 (309)
+++||++-+-|..- ...+.+.|++.|++|+-+..+ .. ++.-..+.+.|.+..+ +|.+||-+++
T Consensus 187 ~~~kVvvD~~nG~~--~~~~~~ll~~LG~~v~~l~~~~dg~~~~~~~~~~~l~~l~~~v~~~~adlGia~DgDgDR~~~v 264 (465)
T PRK14317 187 QGVKIVLDLAWGAA--VACAPEVFKALGAEVICLHDQPDGDRINVNCGSTHLEPLQAAVLEHGADMGFAFDGDADRVLAV 264 (465)
T ss_pred CCCEEEEECCCchH--HHHHHHHHHHcCCeEEEEecccCCCCCCCCCchHhHHHHHHHHHhcCCCEEEEECCCCcEEEEE
Confidence 46899998887433 345667778889999876442 11 1233455555654110 4555555555
Q ss_pred ecCc
Q 021698 76 CGTG 79 (309)
Q Consensus 76 cgtG 79 (309)
+..|
T Consensus 265 d~~G 268 (465)
T PRK14317 265 DGQG 268 (465)
T ss_pred CCCC
Confidence 5554
No 333
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=21.50 E-value=4.1e+02 Score=26.33 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=41.2
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-C--C------cchhHHHHHHhhcCCC------CCCcceEEEE
Q 021698 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-D--Y------YSIGAEVGRRVSSSDS------SETTTRGLVA 75 (309)
Q Consensus 11 ~~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-~--y------~~~a~~va~~v~~~~~------~~~~~~gi~~ 75 (309)
.++||++-+-|.. -...+...|++.|.+|+-+-.+ | + ++.-..+.+.|.+..+ ++.+||-+++
T Consensus 171 ~~lkVvvD~~~G~--~~~~~~~ll~~lg~~v~~in~~~d~~~~~~~~~~~~l~~l~~~v~~~~adlGia~DgD~DR~~~v 248 (443)
T TIGR01455 171 SGLKVVLDCANGA--AYKVAPHVFRELGAEVIAIGVEPDGLNINDGCGSTHLDALQKAVREHGADLGIAFDGDADRVLAV 248 (443)
T ss_pred CCCEEEEECCCch--HHHHHHHHHHHcCCEEEEEccCCCCCCCCCCCCCCCHHHHHHHHhhcCCCEEEEEcCCCceEEEE
Confidence 4689999988854 3456777888999998866432 1 1 1222344555544211 5666676667
Q ss_pred ecCc
Q 021698 76 CGTG 79 (309)
Q Consensus 76 cgtG 79 (309)
+..|
T Consensus 249 d~~G 252 (443)
T TIGR01455 249 DANG 252 (443)
T ss_pred CCCC
Confidence 6666
No 334
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=21.39 E-value=4.4e+02 Score=22.82 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=38.4
Q ss_pred ccccCc-cEEEEEEeCEEEEEEEeC--------CeEEEecCCcEEEECCCCcEEEE-EcC-CeEEEEEEcC
Q 021698 228 AHHHTF-GHDLVVLEGKKSVWNLTK--------GERFDLTVGDYLFTPAGDVHRVK-YYE-ETEFFIKWDG 287 (309)
Q Consensus 228 ~H~H~~-~e~vyVl~G~l~v~~~~~--------~~~~~L~pGd~i~iP~g~~H~~~-n~~-d~~~~i~~~g 287 (309)
.-+|+. .|.++.+.|.--+.+... =+-+.+++|+.+.+.+|++|..- ..+ ...|+++..+
T Consensus 73 mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~~dF~vvdr~ 143 (162)
T PRK03606 73 LERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEVSDFLVVDRG 143 (162)
T ss_pred EEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccccccCCCceEEEEeCC
Confidence 356664 455666777655532211 15588999999999999999753 333 3556665554
No 335
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=21.38 E-value=2.7e+02 Score=25.82 Aligned_cols=65 Identities=14% Similarity=0.031 Sum_probs=42.1
Q ss_pred cEEEEE--eCcccHHHHHHHHHHHHhCCCcEEEecCCC--CcchhHHHHHHhhcCCCCCCcceEEEEecCchhhh
Q 021698 13 LKIIAG--ADSFGAELKDALVSHLRSLNIDVEDLGTSD--YYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVA 83 (309)
Q Consensus 13 mkI~ig--~D~~g~~lk~~l~~~l~~~g~~v~d~g~~~--y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~ 83 (309)
.||++- .|-.|-.+.+.+.+.|++.|.+|+...... -.|+...+.+.... + ..+|+++++|-...
T Consensus 136 ~~v~~i~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~----~--~d~v~~~~~~~~~~ 204 (334)
T cd06327 136 KKWFFLTADYAFGHSLERDARKVVKANGGKVVGSVRHPLGTSDFSSYLLQAQAS----G--ADVLVLANAGADTV 204 (334)
T ss_pred CeEEEEecchHHhHHHHHHHHHHHHhcCCEEcCcccCCCCCccHHHHHHHHHhC----C--CCEEEEeccchhHH
Confidence 456655 444556789999999999999998644332 23455444444333 2 35888898886554
No 336
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=21.36 E-value=3.5e+02 Score=26.17 Aligned_cols=61 Identities=15% Similarity=0.088 Sum_probs=40.4
Q ss_pred EEEEEeCcccHH---HHHHHHHHHHhCCCcEEEecC-CCCc--chhHHHHHHhhcCCCCCCcceEEEEecCc
Q 021698 14 KIIAGADSFGAE---LKDALVSHLRSLNIDVEDLGT-SDYY--SIGAEVGRRVSSSDSSETTTRGLVACGTG 79 (309)
Q Consensus 14 kI~ig~D~~g~~---lk~~l~~~l~~~g~~v~d~g~-~~y~--~~a~~va~~v~~~~~~~~~~~gi~~cgtG 79 (309)
|+.|-+|...+. +-+.+++.|++.|+++.-|.. ...| +...+.++.+.+ ..+| .|+--|.|
T Consensus 25 r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~----~~~D-~IIavGGG 91 (375)
T cd08179 25 KAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMRE----FEPD-WIIALGGG 91 (375)
T ss_pred eEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHh----cCCC-EEEEeCCc
Confidence 788888876554 568999999999998887743 3233 344666666665 4555 45555555
No 337
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=21.28 E-value=1.4e+02 Score=24.00 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=13.3
Q ss_pred cEEEEEeC-cccHHHHHHHHHHH
Q 021698 13 LKIIAGAD-SFGAELKDALVSHL 34 (309)
Q Consensus 13 mkI~ig~D-~~g~~lk~~l~~~l 34 (309)
|||++-|| |.+...-+++.+++
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~ 23 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI 23 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH
T ss_pred CEEEEEeCCCCChhHHHHHHHHh
Confidence 89999999 55555434444444
No 338
>PRK00147 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=21.14 E-value=90 Score=30.49 Aligned_cols=62 Identities=18% Similarity=0.385 Sum_probs=45.6
Q ss_pred EEEEeCcccHHHHHHHHHHHHhCCCcEEEe------cCC---------------CCcchhHHHHHHhhcCCCCCCcceEE
Q 021698 15 IIAGADSFGAELKDALVSHLRSLNIDVEDL------GTS---------------DYYSIGAEVGRRVSSSDSSETTTRGL 73 (309)
Q Consensus 15 I~ig~D~~g~~lk~~l~~~l~~~g~~v~d~------g~~---------------~y~~~a~~va~~v~~~~~~~~~~~gi 73 (309)
=++++=-||.+.-+.|.+.|+++|+++..+ ||. .|+.+....+++|... ....+=|
T Consensus 174 GsVAAPTAGLHFt~~ll~~L~~kGv~~a~vTLHVG~GTF~PV~~edi~~H~mH~E~~~I~~~ta~~i~~a---k~~G~rI 250 (342)
T PRK00147 174 GAVAAPTAGLHFTEELLEKLKAKGVEIAFVTLHVGAGTFRPVRVEDIEEHKMHSEWYEVPQETADAINAA---KARGGRV 250 (342)
T ss_pred CceecCCCccCCCHHHHHHHHHCCCcEEEEEEeecCCCCcCcccCccccCCcccEEEEECHHHHHHHHHH---HHcCCeE
Confidence 367888899999999999999999888764 442 1778899999999863 2222335
Q ss_pred EEecCc
Q 021698 74 VACGTG 79 (309)
Q Consensus 74 ~~cgtG 79 (309)
+-+||=
T Consensus 251 iAVGTT 256 (342)
T PRK00147 251 IAVGTT 256 (342)
T ss_pred EEEccc
Confidence 556653
No 339
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=21.01 E-value=2e+02 Score=30.00 Aligned_cols=72 Identities=22% Similarity=0.229 Sum_probs=46.5
Q ss_pred EEEEEeCcccHHHHHHHHHHHHhCCCcEE--EecCCCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCCc
Q 021698 14 KIIAGADSFGAELKDALVSHLRSLNIDVE--DLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPG 91 (309)
Q Consensus 14 kI~ig~D~~g~~lk~~l~~~l~~~g~~v~--d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~g 91 (309)
-|+.||+. -.+.-++..+.|++.|+++. =.+.+--|+.....++...+ ... -++||+.|. ++-.||
T Consensus 414 ~i~~gs~s-d~~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~----~~~--~v~i~~ag~-----~~~l~~ 481 (577)
T PLN02948 414 GIIMGSDS-DLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHS----RGL--QVIIAGAGG-----AAHLPG 481 (577)
T ss_pred EEEECchh-hHHHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHH----CCC--CEEEEEcCc-----cccchH
Confidence 36666665 56777888899999996633 33445566666666655543 222 388998884 566677
Q ss_pred eEEEEe
Q 021698 92 VFATTC 97 (309)
Q Consensus 92 iraa~~ 97 (309)
|.|++.
T Consensus 482 ~~a~~t 487 (577)
T PLN02948 482 MVASMT 487 (577)
T ss_pred HHhhcc
Confidence 766654
No 340
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=20.96 E-value=1.4e+02 Score=22.65 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhCCCcEEEecCC--CCcc
Q 021698 25 ELKDALVSHLRSLNIDVEDLGTS--DYYS 51 (309)
Q Consensus 25 ~lk~~l~~~l~~~g~~v~d~g~~--~y~~ 51 (309)
.+|+.+...|+..|+++.+++-. +||+
T Consensus 83 ~v~~~l~~~~~~~Gi~i~~v~i~~i~~~~ 111 (121)
T cd02106 83 EVREALQEDLDKYGIEVVDVRIKDIDPPE 111 (121)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEecCCCH
Confidence 66888888899999999999765 4665
No 341
>PRK09004 FMN-binding protein MioC; Provisional
Probab=20.91 E-value=3.1e+02 Score=22.85 Aligned_cols=56 Identities=25% Similarity=0.329 Sum_probs=36.4
Q ss_pred CcEEEEEeCcccH-HHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCcceEEEEecC-chh
Q 021698 12 PLKIIAGADSFGA-ELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGT-GVG 81 (309)
Q Consensus 12 ~mkI~ig~D~~g~-~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgt-G~G 81 (309)
+..|+-||.-.-. .+-+.|.+.|++.|++|.-+-. .+ . ..+. ..+.-|++|.| |.|
T Consensus 3 ~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~---~~----~-~~l~------~~~~li~~~sT~G~G 60 (146)
T PRK09004 3 DITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHG---PL----L-DDLS------ASGLWLIVTSTHGAG 60 (146)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEecc---CC----H-HHhc------cCCeEEEEECCCCCC
Confidence 4568888887554 6678888899999988763211 11 1 2222 34677888876 788
No 342
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=20.90 E-value=3.2e+02 Score=21.99 Aligned_cols=49 Identities=16% Similarity=0.093 Sum_probs=34.9
Q ss_pred EEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcC-CeEEEEEEcC
Q 021698 237 LVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE-ETEFFIKWDG 287 (309)
Q Consensus 237 vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~-d~~~~i~~~g 287 (309)
+.+.+|.+++++..++....+..++. +.-|.+|.+...- .....+..++
T Consensus 24 l~L~~G~l~~~~~~G~~~~~~~~~~~--i~dg~wh~v~~~r~~~~~~L~Vd~ 73 (131)
T PF00054_consen 24 LELRDGRLEFRYNLGSGPASLRSPQK--INDGKWHTVSVSRNGRNGSLSVDG 73 (131)
T ss_dssp EEEETTEEEEEEESSSEEEEEEESSE--TTSSSEEEEEEEEETTEEEEEETT
T ss_pred EEEECCEEEEEEeCCCccceecCCCc--cCCCcceEEEEEEcCcEEEEEECC
Confidence 45789999987666777777777776 8889999886643 3445555444
No 343
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=20.88 E-value=3.9e+02 Score=24.42 Aligned_cols=59 Identities=20% Similarity=0.199 Sum_probs=38.0
Q ss_pred EeCcccHHHHHHHHHHHHhCCCcEEEe---cCCCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhh
Q 021698 18 GADSFGAELKDALVSHLRSLNIDVEDL---GTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVA 83 (309)
Q Consensus 18 g~D~~g~~lk~~l~~~l~~~g~~v~d~---g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~ 83 (309)
..|..|..+.+.+.+.|++.|.+|++. ... -.++...+.+ +.+ ...+. |++|+++..+.
T Consensus 143 ~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~-~~d~~~~~~~-l~~----~~~d~-v~~~~~~~~~~ 204 (343)
T PF13458_consen 143 PDDPYGRSLAEAFRKALEAAGGKVVGEIRYPPG-DTDFSALVQQ-LKS----AGPDV-VVLAGDPADAA 204 (343)
T ss_dssp ESSHHHHHHHHHHHHHHHHTTCEEEEEEEE-TT-SSHHHHHHHH-HHH----TTTSE-EEEESTHHHHH
T ss_pred cCchhhhHHHHHHHHHHhhcCceeccceecccc-cccchHHHHH-Hhh----cCCCE-EEEeccchhHH
Confidence 355578899999999999999998633 322 2556544444 443 34454 77777665443
No 344
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=20.76 E-value=7.6e+02 Score=23.75 Aligned_cols=118 Identities=15% Similarity=0.085 Sum_probs=0.0
Q ss_pred CCCcccCCCCCCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEe------cCCCCcchhHHHHHHhhcCCCCCCcceEEE
Q 021698 1 MAENADAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDL------GTSDYYSIGAEVGRRVSSSDSSETTTRGLV 74 (309)
Q Consensus 1 ~~~~~~~~~~~~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~------g~~~y~~~a~~va~~v~~~~~~~~~~~gi~ 74 (309)
|+.. +..+....||+|...+-+ ..+.+.|++.|.+++-+ -..+.+.+...+.+.... ++..+
T Consensus 1 ~~~~-~~~pL~g~rIlvtr~~~a----~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~-------~~d~v 68 (381)
T PRK07239 1 MAQA-DSAPLAGFTVGVTAARRA----EELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAA-------PPDIV 68 (381)
T ss_pred CCCC-CCCCCCCcEEEEeccCCH----HHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcC-------CCCEE
Q ss_pred EecCchhhhhhh-------------cCCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHH
Q 021698 75 ACGTGVGVAIFA-------------NKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILD 132 (309)
Q Consensus 75 ~cgtG~G~~i~a-------------NK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~ 132 (309)
+..|+.|+..++ .+..+++.+.+-.-....+-.. +-.+-.++....+..++..+..
T Consensus 69 vfTS~ngv~~~~~~l~~~~~~~~~~~~l~~~~i~aVG~~Ta~aL~~~--G~~~~~~p~~~~~e~L~~~l~~ 137 (381)
T PRK07239 69 VATTGIGFRGWVEAADGWGLADELLEALSSARLLARGPKATGAIRAA--GLREEWSPASESSAEVLEYLLE 137 (381)
T ss_pred EEeChHHHHHHHHHHHHcCChHHHHHHHcCCeEEEECccHHHHHHHc--CCCCccCCCCCccHHHHHHHhc
No 345
>PHA02119 hypothetical protein
Probab=20.70 E-value=74 Score=23.92 Aligned_cols=30 Identities=33% Similarity=0.420 Sum_probs=23.5
Q ss_pred cEEEEEeCcccHHHHHHHHHHHHhCCCcEE
Q 021698 13 LKIIAGADSFGAELKDALVSHLRSLNIDVE 42 (309)
Q Consensus 13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~ 42 (309)
.||-+.-|..---+-..|.+||+.+||++-
T Consensus 42 f~isf~~~kfp~i~~~divdylr~lgy~~~ 71 (87)
T PHA02119 42 FKISFDVAKFPAIMPKDIVDYLRSLGYDAK 71 (87)
T ss_pred eEEEeccccCCccccHHHHHHHHHccchhc
Confidence 477777776655667789999999999875
No 346
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=20.59 E-value=1.5e+02 Score=28.29 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=24.5
Q ss_pred CCcEEEEEeCcccH---HHHHHHHHHHHhCCCcEE
Q 021698 11 HPLKIIAGADSFGA---ELKDALVSHLRSLNIDVE 42 (309)
Q Consensus 11 ~~mkI~ig~D~~g~---~lk~~l~~~l~~~g~~v~ 42 (309)
+.|||.|-++..|- .--++|++.|++.|++|+
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~ 37 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDV 37 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcE
Confidence 46799999998882 445778888999998644
No 347
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=20.49 E-value=4.4e+02 Score=26.22 Aligned_cols=67 Identities=13% Similarity=0.220 Sum_probs=40.6
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-C--Cc------chhHHHHHHhhcCCC------CCCcceEEEE
Q 021698 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-D--YY------SIGAEVGRRVSSSDS------SETTTRGLVA 75 (309)
Q Consensus 11 ~~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-~--y~------~~a~~va~~v~~~~~------~~~~~~gi~~ 75 (309)
+++||++-+-|... ...+...|++.|.+|+-+-.+ | ++ .-=..+.+.|.+..+ ++.+||-+++
T Consensus 175 ~~lkVvvD~~~G~~--~~~~~~ll~~lG~~v~~i~~~~dg~~~~~~~~~~~l~~l~~~v~~~~adlGia~DgDgDR~~iv 252 (448)
T PRK14315 175 DGLRVVVDCANGAA--YKVAPEALWELGAEVITIGVEPNGFNINEECGSTHPEALAKKVREVRADIGIALDGDADRVIIV 252 (448)
T ss_pred CCCEEEEECCCchH--HHHHHHHHHHcCCeEEEeccCCCCCCCCCCCCCCCHHHHHHHHHHcCCCEEEEEcCCCceEEEE
Confidence 46899998887533 456677788899998876432 1 11 112345566654211 5666666666
Q ss_pred ecCc
Q 021698 76 CGTG 79 (309)
Q Consensus 76 cgtG 79 (309)
+..|
T Consensus 253 d~~G 256 (448)
T PRK14315 253 DEKG 256 (448)
T ss_pred cCCC
Confidence 6666
No 348
>PRK02491 putative deoxyribonucleotide triphosphate pyrophosphatase/unknown domain fusion protein; Reviewed
Probab=20.40 E-value=1.7e+02 Score=28.38 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=51.8
Q ss_pred CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC-----------CCCcchhHHHHHHhhcCCCCCCcceEEEEecCc
Q 021698 11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----------SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTG 79 (309)
Q Consensus 11 ~~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~-----------~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG 79 (309)
-.+||++++-..+= -+++++.|...|++|+.+.. .+|.+-|..=|+.+++. ...-+|..-||
T Consensus 126 ~~~kIv~AT~N~~K--~~E~~~iL~~~~iev~~l~~~~~~~Ei~Etg~Tf~ENA~~KA~~aa~~-----~g~pvLADDSG 198 (328)
T PRK02491 126 FGDTILIATRNEGK--TKEFRKLFGKLGYKVENLNDYPDLPEVAETGMTFEENARLKAETISRL-----TGKMVLADDSG 198 (328)
T ss_pred CCCeEEEEcCChhH--HHHHHHHHhhcCcEEEehhhcCCCCCcCCCCCCHHHHHHHHHHHHHHH-----HCCCEEEEccE
Confidence 34689988866542 35677778778888875442 13556666666666541 12358888888
Q ss_pred hhhhhhhcCCCceEEEE
Q 021698 80 VGVAIFANKNPGVFATT 96 (309)
Q Consensus 80 ~G~~i~aNK~~giraa~ 96 (309)
+=+. +.|.+|||+.|.
T Consensus 199 L~Vd-AL~G~PGvySAR 214 (328)
T PRK02491 199 LKVD-ALGGLPGVWSAR 214 (328)
T ss_pred EEEc-ccCCCCcccchh
Confidence 7554 679999998765
No 349
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=20.37 E-value=2.3e+02 Score=25.86 Aligned_cols=80 Identities=8% Similarity=0.027 Sum_probs=47.6
Q ss_pred hhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCCce-EEEEeCCHHHHHHHHhhcCcceeeeccc-------ccC
Q 021698 52 IGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGV-FATTCLTPADALNTRSINNCNVLAVSGM-------STS 123 (309)
Q Consensus 52 ~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~gi-raa~~~~~~~A~~~r~hNnaNvl~~g~~-------~~~ 123 (309)
+|.++++.|.+ | + -|++. +|-=+...|.-+|.. .-.++++...|...+.++|.+++++||. ++|
T Consensus 83 IA~~Aa~lI~~----g--d-~Ifld-~GtT~~~l~~~L~~~~ltVvTNs~~ia~~l~~~~~~~vil~GG~~~~~~~~~~G 154 (240)
T PRK10411 83 IAREALAWIEE----G--M-VIALD-ASSTCWYLARQLPDINIQVFTNSHPICQELGKRERIQLISSGGTLERKYGCYVN 154 (240)
T ss_pred HHHHHHHhCCC----C--C-EEEEc-CcHHHHHHHHhhCCCCeEEEeCCHHHHHHHhcCCCCEEEEECCEEeCCCCceEC
Confidence 66666666654 2 2 34443 333334444433321 5667778888888888899999999997 456
Q ss_pred HHHHHHHHHHH-hcCCCC
Q 021698 124 KESAVEILDTW-LKTPFK 140 (309)
Q Consensus 124 ~~~a~~i~~~~-l~~~f~ 140 (309)
+. +.+.++.| ++.-|-
T Consensus 155 ~~-a~~~l~~~~~d~afi 171 (240)
T PRK10411 155 PS-LISQLKSLEIDLFIF 171 (240)
T ss_pred HH-HHHHHHhcCCCEEEE
Confidence 54 44455443 444443
No 350
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=20.28 E-value=2.1e+02 Score=26.29 Aligned_cols=62 Identities=13% Similarity=0.103 Sum_probs=42.1
Q ss_pred hhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCCce--EEEEeCCHHHHHHHHhhcCcceeeecccc
Q 021698 52 IGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGV--FATTCLTPADALNTRSINNCNVLAVSGMS 121 (309)
Q Consensus 52 ~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~gi--raa~~~~~~~A~~~r~hNnaNvl~~g~~~ 121 (309)
+|..+|+.|.+ | +.-++ ..|-=.-..|-..++. ....|++...|......++..++.+||.+
T Consensus 81 IA~~Aa~lI~~----g--~~ifl--d~GTT~~~la~~L~~~~~ltviTNsl~ia~~l~~~~~~~vi~~GG~~ 144 (253)
T COG1349 81 IAKAAATLIED----G--DTIFL--DAGTTTLALARALPDDNNLTVITNSLNIAAALLEKPNIEVILLGGTV 144 (253)
T ss_pred HHHHHHhhCCC----C--CEEEE--CCCcHHHHHHHHhCcCCCeEEEeCCHHHHHHHHhCCCCeEEEeCcEE
Confidence 66667777654 3 33333 3343444455555544 47888888888888888999999999985
No 351
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=20.14 E-value=4.5e+02 Score=24.52 Aligned_cols=64 Identities=14% Similarity=0.165 Sum_probs=41.0
Q ss_pred EEEEE--eCcccHHHHHHHHHHHHhCCCcEEEecCCC--CcchhHHHHHHhhcCCCCCCcceEEEEecCchhhh
Q 021698 14 KIIAG--ADSFGAELKDALVSHLRSLNIDVEDLGTSD--YYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVA 83 (309)
Q Consensus 14 kI~ig--~D~~g~~lk~~l~~~l~~~g~~v~d~g~~~--y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~ 83 (309)
||+|- .|..|-.+.+.+++.|++.|++|+.....+ -.++...+.+.... + . ..|++++++....
T Consensus 140 ~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~----~-~-d~v~~~~~~~~~~ 207 (347)
T cd06335 140 KVALLLDNTGWGRSNRKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLRAKAA----G-A-DAIIIVGNGPEGA 207 (347)
T ss_pred eEEEEeccCchhhhHHHHHHHHHHHcCCeeEEEeeecCCCccHHHHHHHHHhC----C-C-CEEEEEecChHHH
Confidence 55555 344677899999999999999998755432 24565555555443 3 3 4566666664443
Done!