Query 021699
Match_columns 309
No_of_seqs 281 out of 2867
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 05:00:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00991 3a0901s02IAP34 GTP-b 100.0 3.1E-63 6.7E-68 443.9 30.1 305 3-307 1-306 (313)
2 TIGR00993 3a0901s04IAP86 chlor 100.0 7.2E-40 1.6E-44 313.8 26.9 252 39-290 118-378 (763)
3 cd01853 Toc34_like Toc34-like 100.0 2.7E-39 5.8E-44 285.9 24.3 244 9-252 1-247 (249)
4 KOG1547 Septin CDC10 and relat 100.0 6.8E-28 1.5E-32 204.3 13.7 248 9-298 24-300 (336)
5 PF04548 AIG1: AIG1 family; I 100.0 1.7E-27 3.6E-32 206.8 16.2 191 40-254 1-195 (212)
6 COG1160 Predicted GTPases [Gen 99.9 3.3E-28 7.2E-33 225.0 5.7 239 9-281 148-393 (444)
7 cd01852 AIG1 AIG1 (avrRpt2-ind 99.9 1.4E-25 3.1E-30 192.3 19.2 184 40-248 1-187 (196)
8 COG5019 CDC3 Septin family pro 99.9 2.6E-23 5.7E-28 187.4 16.2 247 10-297 2-278 (373)
9 COG3596 Predicted GTPase [Gene 99.9 8.9E-23 1.9E-27 177.5 17.4 213 7-253 7-230 (296)
10 KOG2655 Septin family protein 99.9 4.3E-23 9.4E-28 187.4 14.8 248 11-300 1-277 (366)
11 cd01850 CDC_Septin CDC/Septin. 99.9 1.7E-22 3.6E-27 181.9 14.9 235 39-308 4-271 (276)
12 PRK03003 GTP-binding protein D 99.9 4.1E-22 8.8E-27 192.4 15.9 206 38-281 210-424 (472)
13 PF02421 FeoB_N: Ferrous iron 99.9 1.3E-21 2.8E-26 160.3 15.5 144 40-213 1-144 (156)
14 PF00735 Septin: Septin; Inte 99.9 5.3E-23 1.2E-27 185.0 7.0 235 39-308 4-271 (281)
15 TIGR03594 GTPase_EngA ribosome 99.9 4.6E-22 9.9E-27 190.2 8.7 206 38-280 171-385 (429)
16 PRK00093 GTP-binding protein D 99.8 4.7E-21 1E-25 183.6 11.9 205 38-280 172-385 (435)
17 PRK09518 bifunctional cytidyla 99.8 7.7E-20 1.7E-24 184.5 18.0 206 38-281 449-663 (712)
18 COG1159 Era GTPase [General fu 99.8 3.7E-19 8E-24 157.0 18.0 125 38-170 5-130 (298)
19 KOG3859 Septins (P-loop GTPase 99.8 2.3E-20 4.9E-25 161.8 9.1 243 9-297 20-289 (406)
20 COG1160 Predicted GTPases [Gen 99.8 4.8E-19 1E-23 164.3 16.3 120 40-167 4-125 (444)
21 PF01926 MMR_HSR1: 50S ribosom 99.8 1.1E-18 2.3E-23 136.9 14.1 114 41-163 1-116 (116)
22 COG0486 ThdF Predicted GTPase 99.8 7.2E-19 1.6E-23 163.6 14.2 125 37-170 215-340 (454)
23 TIGR00436 era GTP-binding prot 99.8 1.4E-17 3E-22 149.8 17.8 118 41-167 2-120 (270)
24 cd04104 p47_IIGP_like p47 (47- 99.8 2.1E-17 4.5E-22 141.8 16.6 179 39-251 1-190 (197)
25 KOG1191 Mitochondrial GTPase [ 99.8 3.7E-17 8.1E-22 152.0 19.0 220 37-298 266-497 (531)
26 cd01895 EngA2 EngA2 subfamily. 99.8 9.2E-17 2E-21 133.3 19.1 125 39-169 2-128 (174)
27 PF05049 IIGP: Interferon-indu 99.8 6E-19 1.3E-23 162.6 6.3 241 24-306 23-284 (376)
28 cd01898 Obg Obg subfamily. Th 99.8 5.8E-17 1.3E-21 134.9 16.5 126 41-169 2-129 (170)
29 COG1084 Predicted GTPase [Gene 99.8 2.2E-17 4.8E-22 147.1 14.6 134 25-168 154-294 (346)
30 PRK15494 era GTPase Era; Provi 99.7 1.1E-16 2.3E-21 148.3 19.7 122 38-167 51-173 (339)
31 PRK00089 era GTPase Era; Revie 99.7 2.8E-16 6.1E-21 142.9 20.3 121 39-167 5-126 (292)
32 TIGR03156 GTP_HflX GTP-binding 99.7 2.8E-16 6E-21 146.0 19.8 124 38-167 188-314 (351)
33 cd01897 NOG NOG1 is a nucleola 99.7 2.6E-16 5.5E-21 130.8 17.6 122 41-168 2-127 (168)
34 cd04164 trmE TrmE (MnmE, ThdF, 99.7 5.5E-16 1.2E-20 126.7 18.9 120 40-169 2-122 (157)
35 PRK12298 obgE GTPase CgtA; Rev 99.7 4.6E-16 9.9E-21 146.2 19.7 124 41-167 161-288 (390)
36 cd04163 Era Era subfamily. Er 99.7 9.1E-16 2E-20 126.1 18.9 122 38-167 2-124 (168)
37 TIGR03598 GTPase_YsxC ribosome 99.7 5.4E-16 1.2E-20 130.9 17.6 121 38-167 17-142 (179)
38 PRK12299 obgE GTPase CgtA; Rev 99.7 5.4E-16 1.2E-20 143.0 18.9 125 41-168 160-285 (335)
39 TIGR03594 GTPase_EngA ribosome 99.7 6.1E-16 1.3E-20 148.0 18.9 121 41-169 1-122 (429)
40 PRK05291 trmE tRNA modificatio 99.7 7.9E-16 1.7E-20 147.6 19.5 121 38-168 214-335 (449)
41 TIGR02729 Obg_CgtA Obg family 99.7 6.4E-16 1.4E-20 142.3 17.7 125 40-167 158-286 (329)
42 COG0218 Predicted GTPase [Gene 99.7 2.2E-15 4.9E-20 126.4 18.3 124 38-170 23-151 (200)
43 COG0370 FeoB Fe2+ transport sy 99.7 5.8E-16 1.3E-20 150.0 16.8 164 39-248 3-167 (653)
44 cd01879 FeoB Ferrous iron tran 99.7 1.9E-15 4.2E-20 123.9 17.7 116 44-169 1-116 (158)
45 cd01894 EngA1 EngA1 subfamily. 99.7 2.5E-16 5.4E-21 128.9 11.9 118 43-168 1-119 (157)
46 TIGR00450 mnmE_trmE_thdF tRNA 99.7 6.9E-16 1.5E-20 147.3 16.6 121 38-167 202-323 (442)
47 cd04142 RRP22 RRP22 subfamily. 99.7 5.2E-15 1.1E-19 127.1 20.4 175 40-250 1-179 (198)
48 cd04136 Rap_like Rap-like subf 99.7 2.6E-15 5.6E-20 123.9 17.7 119 39-169 1-121 (163)
49 cd04119 RJL RJL (RabJ-Like) su 99.7 2.5E-15 5.3E-20 124.3 17.4 120 40-169 1-125 (168)
50 PRK03003 GTP-binding protein D 99.7 1.9E-15 4.2E-20 146.1 19.2 122 38-167 37-159 (472)
51 cd01878 HflX HflX subfamily. 99.7 2.7E-15 5.8E-20 129.1 17.8 126 38-168 40-167 (204)
52 cd01861 Rab6 Rab6 subfamily. 99.7 8.5E-15 1.8E-19 120.7 19.5 119 40-171 1-122 (161)
53 PRK12297 obgE GTPase CgtA; Rev 99.7 4.1E-15 8.9E-20 140.7 19.5 122 41-166 160-286 (424)
54 cd04145 M_R_Ras_like M-Ras/R-R 99.7 6.8E-15 1.5E-19 121.5 18.5 118 39-169 2-122 (164)
55 cd04171 SelB SelB subfamily. 99.7 5.4E-15 1.2E-19 121.9 17.9 114 40-167 1-117 (164)
56 cd04175 Rap1 Rap1 subgroup. T 99.7 6.1E-15 1.3E-19 122.1 18.0 118 39-169 1-121 (164)
57 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 1.4E-14 3.1E-19 120.2 20.2 121 40-173 3-126 (166)
58 cd01867 Rab8_Rab10_Rab13_like 99.7 6.3E-15 1.4E-19 122.7 18.1 123 39-174 3-128 (167)
59 cd01868 Rab11_like Rab11-like. 99.7 5.5E-15 1.2E-19 122.5 17.3 123 39-174 3-128 (165)
60 cd04112 Rab26 Rab26 subfamily. 99.7 1.6E-14 3.4E-19 123.2 20.2 163 40-248 1-166 (191)
61 cd01865 Rab3 Rab3 subfamily. 99.7 7.1E-15 1.5E-19 122.1 17.5 120 40-171 2-123 (165)
62 cd04140 ARHI_like ARHI subfami 99.7 7.1E-15 1.5E-19 122.1 17.5 121 40-171 2-125 (165)
63 cd04106 Rab23_lke Rab23-like s 99.7 3.6E-15 7.8E-20 123.0 15.6 122 40-174 1-126 (162)
64 cd04138 H_N_K_Ras_like H-Ras/N 99.7 1.2E-14 2.6E-19 119.5 18.1 117 39-168 1-120 (162)
65 cd01864 Rab19 Rab19 subfamily. 99.7 2.1E-14 4.6E-19 119.1 19.6 121 39-171 3-125 (165)
66 PRK12296 obgE GTPase CgtA; Rev 99.7 1E-14 2.2E-19 139.8 20.0 125 40-167 160-297 (500)
67 cd01860 Rab5_related Rab5-rela 99.7 6.1E-15 1.3E-19 121.8 16.2 120 39-170 1-122 (163)
68 cd01881 Obg_like The Obg-like 99.7 1.3E-15 2.8E-20 127.2 12.3 118 44-168 1-134 (176)
69 cd01884 EF_Tu EF-Tu subfamily. 99.7 6.9E-15 1.5E-19 125.9 17.0 150 39-213 2-166 (195)
70 cd01866 Rab2 Rab2 subfamily. 99.7 3.1E-14 6.7E-19 118.7 20.5 124 39-174 4-129 (168)
71 smart00175 RAB Rab subfamily o 99.7 2.6E-14 5.7E-19 117.9 19.9 119 40-171 1-122 (164)
72 smart00173 RAS Ras subfamily o 99.7 9.1E-15 2E-19 120.9 17.1 118 40-169 1-120 (164)
73 cd04176 Rap2 Rap2 subgroup. T 99.7 1.7E-14 3.6E-19 119.3 18.5 117 39-168 1-120 (163)
74 PRK00093 GTP-binding protein D 99.7 2.1E-15 4.6E-20 144.5 15.0 120 40-167 2-122 (435)
75 cd04109 Rab28 Rab28 subfamily. 99.6 1.2E-14 2.6E-19 126.4 17.6 121 40-171 1-126 (215)
76 cd04127 Rab27A Rab27a subfamil 99.6 3.5E-14 7.5E-19 119.4 19.9 123 39-173 4-139 (180)
77 PRK04213 GTP-binding protein; 99.6 2.2E-14 4.7E-19 123.1 19.0 120 38-167 8-143 (201)
78 cd04166 CysN_ATPS CysN_ATPS su 99.6 2.6E-15 5.7E-20 129.9 13.2 113 41-167 1-143 (208)
79 cd04144 Ras2 Ras2 subfamily. 99.6 1.2E-14 2.7E-19 123.8 17.1 120 41-171 1-123 (190)
80 PF00009 GTP_EFTU: Elongation 99.6 7.7E-15 1.7E-19 124.9 15.5 166 38-245 2-187 (188)
81 cd04154 Arl2 Arl2 subfamily. 99.6 1.5E-14 3.3E-19 121.1 17.0 126 27-168 3-129 (173)
82 PRK09554 feoB ferrous iron tra 99.6 1.1E-14 2.5E-19 147.1 18.9 121 39-170 3-128 (772)
83 cd04122 Rab14 Rab14 subfamily. 99.6 2.4E-14 5.1E-19 119.0 17.8 123 40-175 3-128 (166)
84 cd01862 Rab7 Rab7 subfamily. 99.6 2.7E-14 5.8E-19 118.9 18.0 122 40-171 1-126 (172)
85 cd04120 Rab12 Rab12 subfamily. 99.6 2.6E-14 5.6E-19 123.1 18.3 119 40-171 1-122 (202)
86 PRK09518 bifunctional cytidyla 99.6 1.2E-14 2.7E-19 146.9 19.0 120 40-167 276-396 (712)
87 PRK00454 engB GTP-binding prot 99.6 6.6E-14 1.4E-18 119.3 20.6 121 38-167 23-148 (196)
88 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 3.1E-14 6.8E-19 119.4 18.1 122 39-173 2-126 (172)
89 cd04113 Rab4 Rab4 subfamily. 99.6 2.1E-14 4.5E-19 118.5 16.8 120 40-171 1-122 (161)
90 PRK11058 GTPase HflX; Provisio 99.6 3.4E-14 7.4E-19 135.0 20.4 122 40-167 198-322 (426)
91 cd04124 RabL2 RabL2 subfamily. 99.6 2E-14 4.4E-19 119.0 16.7 115 40-167 1-117 (161)
92 PTZ00369 Ras-like protein; Pro 99.6 2.7E-14 5.9E-19 121.5 17.7 119 38-168 4-124 (189)
93 PLN03118 Rab family protein; P 99.6 2.3E-14 4.9E-19 124.2 17.3 122 38-171 13-137 (211)
94 KOG0092 GTPase Rab5/YPT51 and 99.6 1.6E-14 3.4E-19 119.5 15.2 164 38-247 4-169 (200)
95 cd04123 Rab21 Rab21 subfamily. 99.6 3.6E-14 7.9E-19 116.6 17.6 119 40-170 1-121 (162)
96 cd01889 SelB_euk SelB subfamil 99.6 1.7E-14 3.6E-19 123.1 16.0 113 40-167 1-133 (192)
97 cd01874 Cdc42 Cdc42 subfamily. 99.6 4.3E-14 9.2E-19 118.9 18.1 114 40-167 2-118 (175)
98 cd00881 GTP_translation_factor 99.6 2.7E-14 5.8E-19 120.5 16.6 113 41-168 1-128 (189)
99 cd04121 Rab40 Rab40 subfamily. 99.6 4.3E-14 9.4E-19 120.4 17.9 121 39-173 6-129 (189)
100 cd04117 Rab15 Rab15 subfamily. 99.6 4.5E-14 9.8E-19 117.0 17.5 121 40-173 1-124 (161)
101 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 4.9E-14 1.1E-18 121.1 18.2 118 40-168 1-124 (201)
102 cd01863 Rab18 Rab18 subfamily. 99.6 4.5E-14 9.8E-19 116.4 17.2 116 40-167 1-119 (161)
103 cd04125 RabA_like RabA-like su 99.6 2.3E-14 5E-19 121.7 15.7 118 40-170 1-121 (188)
104 cd01891 TypA_BipA TypA (tyrosi 99.6 5.5E-14 1.2E-18 120.1 18.1 113 40-167 3-130 (194)
105 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 1.9E-14 4.1E-19 119.3 14.8 111 41-167 2-115 (168)
106 cd04177 RSR1 RSR1 subgroup. R 99.6 8.7E-14 1.9E-18 115.9 18.7 121 39-171 1-123 (168)
107 cd04118 Rab24 Rab24 subfamily. 99.6 4E-14 8.7E-19 120.6 16.8 116 40-168 1-119 (193)
108 cd04110 Rab35 Rab35 subfamily. 99.6 6.9E-14 1.5E-18 120.1 18.4 119 38-170 5-126 (199)
109 cd00154 Rab Rab family. Rab G 99.6 5.8E-14 1.3E-18 114.3 17.0 119 40-171 1-122 (159)
110 cd00880 Era_like Era (E. coli 99.6 5.3E-14 1.1E-18 114.2 16.7 118 44-169 1-119 (163)
111 cd04160 Arfrp1 Arfrp1 subfamil 99.6 1.5E-14 3.2E-19 120.0 13.5 117 41-167 1-120 (167)
112 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 5.7E-14 1.2E-18 117.6 17.0 118 41-169 2-121 (170)
113 cd01893 Miro1 Miro1 subfamily. 99.6 9.7E-14 2.1E-18 115.4 17.8 115 40-169 1-118 (166)
114 cd04139 RalA_RalB RalA/RalB su 99.6 1.2E-13 2.6E-18 113.8 18.1 116 40-168 1-119 (164)
115 cd00877 Ran Ran (Ras-related n 99.6 7.1E-14 1.5E-18 116.5 16.8 114 40-167 1-117 (166)
116 cd04126 Rab20 Rab20 subfamily. 99.6 1.4E-13 2.9E-18 120.1 19.0 113 40-168 1-114 (220)
117 PLN03110 Rab GTPase; Provision 99.6 1.8E-13 3.9E-18 119.1 19.8 122 38-171 11-134 (216)
118 smart00174 RHO Rho (Ras homolo 99.6 5.2E-14 1.1E-18 117.6 15.8 113 42-168 1-116 (174)
119 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 5.9E-14 1.3E-18 118.9 16.2 117 38-167 2-122 (183)
120 cd04146 RERG_RasL11_like RERG/ 99.6 1E-13 2.2E-18 115.0 17.1 119 41-170 1-122 (165)
121 cd04133 Rop_like Rop subfamily 99.6 1.6E-13 3.5E-18 115.6 18.5 115 40-168 2-119 (176)
122 KOG0084 GTPase Rab1/YPT1, smal 99.6 5.6E-14 1.2E-18 116.7 15.2 126 39-176 9-136 (205)
123 cd04101 RabL4 RabL4 (Rab-like4 99.6 2.8E-13 6E-18 112.0 19.5 119 40-170 1-123 (164)
124 cd01896 DRG The developmentall 99.6 1.8E-13 3.8E-18 120.5 19.1 87 41-130 2-88 (233)
125 cd04135 Tc10 TC10 subfamily. 99.6 1.3E-13 2.8E-18 115.2 17.4 114 40-167 1-117 (174)
126 cd04114 Rab30 Rab30 subfamily. 99.6 1.5E-13 3.3E-18 114.2 17.6 119 39-170 7-128 (169)
127 CHL00071 tufA elongation facto 99.6 9.1E-14 2E-18 132.1 18.3 151 37-213 10-176 (409)
128 cd04111 Rab39 Rab39 subfamily. 99.6 1.2E-13 2.6E-18 119.7 17.6 121 39-171 2-126 (211)
129 cd04132 Rho4_like Rho4-like su 99.6 9E-14 1.9E-18 117.8 16.4 115 40-168 1-119 (187)
130 cd04131 Rnd Rnd subfamily. Th 99.6 1.6E-13 3.4E-18 115.9 17.8 114 40-167 2-118 (178)
131 cd04149 Arf6 Arf6 subfamily. 99.6 7.4E-14 1.6E-18 116.7 15.5 115 38-167 8-123 (168)
132 cd01871 Rac1_like Rac1-like su 99.6 1.6E-13 3.4E-18 115.3 17.4 115 39-167 1-118 (174)
133 cd04116 Rab9 Rab9 subfamily. 99.6 1.4E-13 2.9E-18 114.7 16.9 119 38-167 4-127 (170)
134 cd01892 Miro2 Miro2 subfamily. 99.6 3.3E-13 7.2E-18 112.8 19.2 117 38-168 3-122 (169)
135 cd00157 Rho Rho (Ras homology) 99.6 1.6E-14 3.5E-19 120.1 11.1 117 40-170 1-120 (171)
136 cd04143 Rhes_like Rhes_like su 99.6 1.4E-13 3E-18 122.1 17.7 123 40-174 1-133 (247)
137 cd00876 Ras Ras family. The R 99.6 8.9E-14 1.9E-18 114.0 15.2 116 41-168 1-118 (160)
138 cd04128 Spg1 Spg1p. Spg1p (se 99.6 1.9E-13 4.2E-18 115.7 17.6 114 40-167 1-117 (182)
139 cd04148 RGK RGK subfamily. Th 99.6 4.7E-13 1E-17 116.9 20.5 118 40-171 1-123 (221)
140 cd04158 ARD1 ARD1 subfamily. 99.6 2E-13 4.3E-18 114.0 17.4 112 41-167 1-113 (169)
141 cd04134 Rho3 Rho3 subfamily. 99.6 8E-14 1.7E-18 118.7 15.2 115 40-168 1-118 (189)
142 cd04130 Wrch_1 Wrch-1 subfamil 99.6 1.6E-13 3.4E-18 115.0 16.6 115 40-168 1-118 (173)
143 smart00177 ARF ARF-like small 99.6 2E-13 4.2E-18 114.8 16.8 114 38-167 12-127 (175)
144 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 2.2E-13 4.7E-18 119.6 17.6 117 37-167 11-130 (232)
145 cd00878 Arf_Arl Arf (ADP-ribos 99.6 1.5E-13 3.3E-18 112.9 15.8 113 41-168 1-114 (158)
146 cd04115 Rab33B_Rab33A Rab33B/R 99.6 3.8E-13 8.2E-18 112.3 18.3 123 39-171 2-126 (170)
147 cd04137 RheB Rheb (Ras Homolog 99.6 2.1E-13 4.6E-18 114.7 16.9 119 40-170 2-122 (180)
148 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 2.9E-13 6.2E-18 114.7 17.4 116 38-167 4-122 (182)
149 cd04157 Arl6 Arl6 subfamily. 99.6 1.2E-13 2.7E-18 113.7 14.8 115 41-167 1-117 (162)
150 PLN03108 Rab family protein; P 99.6 3.8E-13 8.3E-18 116.5 18.1 125 39-175 6-132 (210)
151 cd01876 YihA_EngB The YihA (En 99.6 6.4E-13 1.4E-17 109.4 18.6 119 41-168 1-124 (170)
152 PRK09866 hypothetical protein; 99.6 6.5E-13 1.4E-17 128.6 21.3 48 20-67 50-97 (741)
153 smart00178 SAR Sar1p-like memb 99.5 7.4E-14 1.6E-18 118.4 13.0 115 38-167 16-131 (184)
154 cd04147 Ras_dva Ras-dva subfam 99.5 3.3E-13 7.1E-18 115.8 17.2 115 41-168 1-118 (198)
155 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.5 1.8E-13 3.8E-18 113.4 14.6 129 38-177 21-151 (221)
156 PRK12317 elongation factor 1-a 99.5 1.7E-13 3.7E-18 131.0 16.7 177 38-242 5-214 (425)
157 cd01875 RhoG RhoG subfamily. 99.5 5E-13 1.1E-17 114.0 18.0 116 38-167 2-120 (191)
158 TIGR00437 feoB ferrous iron tr 99.5 1.5E-13 3.2E-18 135.8 16.7 114 46-169 1-114 (591)
159 TIGR00231 small_GTP small GTP- 99.5 4.8E-13 1E-17 108.4 17.0 118 39-168 1-122 (161)
160 PTZ00133 ADP-ribosylation fact 99.5 3.1E-13 6.7E-18 114.4 16.1 115 38-167 16-131 (182)
161 cd04151 Arl1 Arl1 subfamily. 99.5 3.8E-13 8.3E-18 110.8 16.2 112 41-167 1-113 (158)
162 cd04155 Arl3 Arl3 subfamily. 99.5 6E-13 1.3E-17 111.0 17.3 124 28-167 4-128 (173)
163 cd04150 Arf1_5_like Arf1-Arf5- 99.5 3.8E-13 8.3E-18 111.2 15.7 113 40-167 1-114 (159)
164 KOG1490 GTP-binding protein CR 99.5 5.6E-14 1.2E-18 131.0 11.7 147 24-175 153-302 (620)
165 cd04156 ARLTS1 ARLTS1 subfamil 99.5 4E-13 8.7E-18 110.6 15.5 112 41-167 1-114 (160)
166 PLN03071 GTP-binding nuclear p 99.5 5.7E-13 1.2E-17 116.2 17.1 117 37-167 11-130 (219)
167 cd01890 LepA LepA subfamily. 99.5 3.8E-13 8.3E-18 112.9 15.5 112 41-167 2-132 (179)
168 cd01870 RhoA_like RhoA-like su 99.5 8.9E-13 1.9E-17 110.2 17.6 114 40-167 2-118 (175)
169 COG2262 HflX GTPases [General 99.5 1.2E-12 2.6E-17 120.4 19.5 127 38-169 191-319 (411)
170 KOG1423 Ras-like GTPase ERA [C 99.5 8.1E-14 1.8E-18 123.0 11.4 131 35-170 68-201 (379)
171 PLN00223 ADP-ribosylation fact 99.5 5.4E-13 1.2E-17 112.9 16.0 114 37-167 15-131 (181)
172 PRK15467 ethanolamine utilizat 99.5 3E-13 6.5E-18 112.0 13.6 146 41-246 3-148 (158)
173 PF00071 Ras: Ras family; Int 99.5 8.3E-13 1.8E-17 108.9 15.7 123 41-176 1-126 (162)
174 PLN03127 Elongation factor Tu; 99.5 2.1E-12 4.5E-17 123.7 20.0 179 36-245 58-252 (447)
175 KOG0078 GTP-binding protein SE 99.5 9.4E-13 2E-17 110.8 15.4 126 38-175 11-138 (207)
176 cd01888 eIF2_gamma eIF2-gamma 99.5 7E-13 1.5E-17 114.3 15.1 165 40-246 1-200 (203)
177 cd00879 Sar1 Sar1 subfamily. 99.5 1.3E-12 2.8E-17 110.9 16.6 116 37-167 17-133 (190)
178 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.5 1.8E-12 4E-17 108.7 17.1 115 38-167 14-129 (174)
179 PLN03126 Elongation factor Tu; 99.5 2.2E-12 4.8E-17 124.2 19.7 153 36-213 78-245 (478)
180 COG1163 DRG Predicted GTPase [ 99.5 6E-13 1.3E-17 118.6 14.2 116 8-130 18-151 (365)
181 cd04159 Arl10_like Arl10-like 99.5 2.4E-12 5.3E-17 104.8 16.9 114 42-168 2-115 (159)
182 TIGR02528 EutP ethanolamine ut 99.5 9.8E-13 2.1E-17 106.3 14.2 101 41-168 2-102 (142)
183 cd04162 Arl9_Arfrp2_like Arl9/ 99.5 1.5E-12 3.3E-17 108.2 15.6 110 42-167 2-112 (164)
184 PRK12736 elongation factor Tu; 99.5 1.8E-12 3.9E-17 122.7 17.9 173 37-245 10-201 (394)
185 PF08477 Miro: Miro-like prote 99.5 1.1E-13 2.3E-18 108.5 8.0 115 41-165 1-119 (119)
186 cd04129 Rho2 Rho2 subfamily. 99.5 5.2E-12 1.1E-16 107.3 18.9 114 40-167 2-118 (187)
187 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 4.7E-13 1E-17 116.8 12.3 114 40-167 2-118 (222)
188 cd04161 Arl2l1_Arl13_like Arl2 99.5 1.1E-12 2.5E-17 109.3 13.9 112 41-167 1-113 (167)
189 PRK12735 elongation factor Tu; 99.5 2.7E-12 5.8E-17 121.6 17.7 176 36-245 9-203 (396)
190 TIGR00475 selB selenocysteine- 99.5 2.8E-12 6E-17 126.7 17.9 114 40-167 1-116 (581)
191 PF00350 Dynamin_N: Dynamin fa 99.5 7.2E-13 1.6E-17 110.2 11.6 112 42-164 1-168 (168)
192 cd04102 RabL3 RabL3 (Rab-like3 99.5 1.2E-12 2.6E-17 112.6 13.1 119 40-170 1-145 (202)
193 PRK05306 infB translation init 99.4 2.2E-12 4.8E-17 130.2 16.2 114 38-167 289-402 (787)
194 PRK00049 elongation factor Tu; 99.4 8.2E-12 1.8E-16 118.2 19.1 175 37-245 10-203 (396)
195 KOG0087 GTPase Rab11/YPT3, sma 99.4 4.4E-13 9.6E-18 112.4 9.0 126 39-176 14-141 (222)
196 cd04103 Centaurin_gamma Centau 99.4 1.4E-11 2.9E-16 102.0 17.2 109 40-167 1-112 (158)
197 cd01873 RhoBTB RhoBTB subfamil 99.4 8.1E-12 1.7E-16 107.0 16.2 116 39-168 2-134 (195)
198 cd01886 EF-G Elongation factor 99.4 3.1E-12 6.7E-17 114.9 14.2 112 41-167 1-129 (270)
199 cd04165 GTPBP1_like GTPBP1-lik 99.4 1.9E-11 4.1E-16 106.9 18.7 113 41-167 1-151 (224)
200 KOG1489 Predicted GTP-binding 99.4 2.3E-12 5.1E-17 114.4 12.9 120 41-167 198-325 (366)
201 TIGR00485 EF-Tu translation el 99.4 5E-12 1.1E-16 119.7 16.0 152 37-213 10-176 (394)
202 PRK10512 selenocysteinyl-tRNA- 99.4 8.7E-12 1.9E-16 123.7 18.3 163 40-245 1-166 (614)
203 cd01885 EF2 EF2 (for archaea a 99.4 1.4E-11 2.9E-16 107.5 17.2 112 41-167 2-138 (222)
204 TIGR00487 IF-2 translation ini 99.4 5.8E-12 1.3E-16 124.1 16.6 114 38-167 86-200 (587)
205 PRK05124 cysN sulfate adenylyl 99.4 8.4E-12 1.8E-16 120.5 17.2 120 35-168 23-174 (474)
206 cd04168 TetM_like Tet(M)-like 99.4 6.1E-12 1.3E-16 110.9 14.9 128 41-190 1-145 (237)
207 cd01883 EF1_alpha Eukaryotic e 99.4 4E-12 8.8E-17 110.8 13.1 115 41-168 1-151 (219)
208 PRK05506 bifunctional sulfate 99.4 4.2E-12 9.1E-17 127.0 14.9 118 37-168 22-171 (632)
209 KOG0080 GTPase Rab18, small G 99.4 4.1E-12 8.8E-17 102.1 11.1 126 39-176 11-139 (209)
210 TIGR02836 spore_IV_A stage IV 99.4 6.1E-12 1.3E-16 116.4 13.7 132 28-166 6-192 (492)
211 KOG0095 GTPase Rab30, small G 99.4 1.7E-11 3.6E-16 97.4 14.2 118 40-169 8-127 (213)
212 PLN00023 GTP-binding protein; 99.4 6.5E-12 1.4E-16 114.1 13.7 122 38-169 20-166 (334)
213 TIGR02034 CysN sulfate adenyly 99.4 8E-12 1.7E-16 118.7 14.8 172 40-242 1-206 (406)
214 TIGR00483 EF-1_alpha translati 99.4 1.4E-11 3E-16 117.9 16.1 178 37-242 5-216 (426)
215 cd00882 Ras_like_GTPase Ras-li 99.4 1.2E-11 2.7E-16 98.9 13.2 114 44-170 1-118 (157)
216 KOG0394 Ras-related GTPase [Ge 99.4 1.5E-11 3.2E-16 101.1 13.1 120 37-167 7-131 (210)
217 CHL00189 infB translation init 99.4 2.4E-11 5.1E-16 121.8 17.0 114 38-167 243-360 (742)
218 KOG0098 GTPase Rab2, small G p 99.4 2.5E-11 5.5E-16 100.0 14.0 127 39-177 6-134 (216)
219 cd04169 RF3 RF3 subfamily. Pe 99.4 3E-11 6.5E-16 108.4 15.7 113 40-167 3-136 (267)
220 TIGR01394 TypA_BipA GTP-bindin 99.4 4.7E-11 1E-15 118.0 18.5 176 41-247 3-193 (594)
221 cd04105 SR_beta Signal recogni 99.3 2.3E-11 5.1E-16 104.8 14.3 116 41-168 2-123 (203)
222 cd04170 EF-G_bact Elongation f 99.3 1.5E-11 3.3E-16 110.5 13.6 112 41-167 1-129 (268)
223 TIGR00491 aIF-2 translation in 99.3 3.8E-11 8.3E-16 118.2 17.2 113 39-167 4-134 (590)
224 cd04167 Snu114p Snu114p subfam 99.3 2.9E-11 6.3E-16 104.9 14.4 112 41-167 2-136 (213)
225 smart00053 DYNc Dynamin, GTPas 99.3 4.7E-11 1E-15 104.9 15.6 124 38-169 25-207 (240)
226 PTZ00132 GTP-binding nuclear p 99.3 1E-10 2.3E-15 101.5 17.7 117 37-167 7-126 (215)
227 PRK10218 GTP-binding protein; 99.3 6.3E-11 1.4E-15 117.1 18.0 177 40-247 6-197 (607)
228 PF00025 Arf: ADP-ribosylation 99.3 1.6E-11 3.4E-16 103.3 11.9 122 28-167 4-128 (175)
229 KOG0079 GTP-binding protein H- 99.3 2.6E-12 5.6E-17 101.8 6.4 119 40-172 9-130 (198)
230 KOG0395 Ras-related GTPase [Ge 99.3 1.6E-11 3.6E-16 105.0 11.0 127 38-176 2-130 (196)
231 KOG0073 GTP-binding ADP-ribosy 99.3 3.6E-11 7.8E-16 97.0 11.7 127 25-167 3-130 (185)
232 PRK04000 translation initiatio 99.3 5.3E-11 1.1E-15 113.2 15.0 169 35-245 5-201 (411)
233 COG0536 Obg Predicted GTPase [ 99.3 8.2E-11 1.8E-15 105.8 15.2 119 42-167 162-288 (369)
234 COG1100 GTPase SAR1 and relate 99.3 1.6E-11 3.4E-16 106.5 10.4 119 39-169 5-126 (219)
235 TIGR00484 EF-G translation elo 99.3 4.9E-11 1.1E-15 120.5 14.9 114 40-168 11-141 (689)
236 smart00176 RAN Ran (Ras-relate 99.3 3.1E-11 6.8E-16 103.7 11.5 109 45-167 1-112 (200)
237 TIGR03680 eif2g_arch translati 99.3 9.8E-11 2.1E-15 111.3 15.8 166 38-245 3-196 (406)
238 TIGR01393 lepA GTP-binding pro 99.3 1.2E-10 2.6E-15 115.2 16.4 113 40-167 4-135 (595)
239 PRK00007 elongation factor G; 99.3 6.2E-11 1.4E-15 119.7 14.3 114 40-168 11-141 (693)
240 PTZ00141 elongation factor 1- 99.3 6.8E-11 1.5E-15 113.4 13.7 180 37-242 5-222 (446)
241 PRK04004 translation initiatio 99.3 1.5E-10 3.4E-15 114.2 16.4 114 38-167 5-136 (586)
242 cd01882 BMS1 Bms1. Bms1 is an 99.3 2.1E-10 4.5E-15 100.5 15.4 109 37-168 37-147 (225)
243 PRK12739 elongation factor G; 99.3 6.7E-11 1.5E-15 119.5 13.9 115 39-168 8-139 (691)
244 cd01858 NGP_1 NGP-1. Autoanti 99.3 1.8E-11 3.9E-16 101.1 7.9 57 38-97 101-157 (157)
245 PTZ00258 GTP-binding protein; 99.3 3.8E-11 8.2E-16 112.3 10.8 86 37-129 19-125 (390)
246 PRK09601 GTP-binding protein Y 99.2 5.8E-11 1.3E-15 109.8 11.1 86 40-129 3-106 (364)
247 cd04178 Nucleostemin_like Nucl 99.2 3.2E-11 7E-16 101.1 8.5 57 38-97 116-172 (172)
248 cd01900 YchF YchF subfamily. 99.2 4E-11 8.7E-16 107.4 9.4 84 42-129 1-102 (274)
249 PF10662 PduV-EutP: Ethanolami 99.2 9.1E-11 2E-15 94.4 10.3 100 41-167 3-102 (143)
250 TIGR00503 prfC peptide chain r 99.2 4.2E-10 9.2E-15 109.8 15.6 115 38-167 10-145 (527)
251 PLN00043 elongation factor 1-a 99.2 1.5E-09 3.2E-14 104.2 19.0 180 37-242 5-222 (447)
252 PRK05433 GTP-binding protein L 99.2 6E-10 1.3E-14 110.5 16.6 113 40-167 8-139 (600)
253 cd01849 YlqF_related_GTPase Yl 99.2 7.5E-11 1.6E-15 97.2 8.1 57 38-97 99-155 (155)
254 PRK09563 rbgA GTPase YlqF; Rev 99.2 8.8E-11 1.9E-15 106.6 9.2 66 38-106 120-185 (287)
255 PRK09435 membrane ATPase/prote 99.2 2E-09 4.3E-14 99.0 17.3 173 25-245 42-260 (332)
256 TIGR03596 GTPase_YlqF ribosome 99.2 1.3E-10 2.7E-15 104.9 9.1 65 38-105 117-181 (276)
257 PF04670 Gtr1_RagA: Gtr1/RagA 99.1 5.9E-10 1.3E-14 97.5 12.6 121 41-168 1-125 (232)
258 PRK00741 prfC peptide chain re 99.1 7.8E-10 1.7E-14 108.0 14.5 115 38-167 9-144 (526)
259 COG1217 TypA Predicted membran 99.1 1.5E-09 3.2E-14 101.0 15.4 178 40-248 6-198 (603)
260 COG1161 Predicted GTPases [Gen 99.1 1.8E-10 3.9E-15 106.0 9.3 93 9-104 100-194 (322)
261 cd01855 YqeH YqeH. YqeH is an 99.1 9.4E-11 2E-15 99.9 6.3 71 24-97 112-190 (190)
262 KOG0086 GTPase Rab4, small G p 99.1 7.5E-10 1.6E-14 88.4 10.8 127 39-177 9-137 (214)
263 KOG1707 Predicted Ras related/ 99.1 7.3E-10 1.6E-14 105.6 12.7 130 36-176 6-137 (625)
264 PTZ00327 eukaryotic translatio 99.1 1.1E-09 2.3E-14 105.2 13.9 167 38-246 33-234 (460)
265 KOG0093 GTPase Rab3, small G p 99.1 8.1E-10 1.8E-14 87.7 10.7 125 39-175 21-147 (193)
266 KOG0088 GTPase Rab21, small G 99.1 1.9E-10 4.2E-15 92.2 7.2 126 39-176 13-140 (218)
267 PRK13351 elongation factor G; 99.1 1.1E-09 2.4E-14 110.8 14.6 114 39-167 8-138 (687)
268 COG5256 TEF1 Translation elong 99.1 1.6E-09 3.4E-14 100.0 13.5 183 37-247 5-225 (428)
269 TIGR00490 aEF-2 translation el 99.1 1.2E-09 2.5E-14 110.9 14.0 115 38-167 18-151 (720)
270 cd01899 Ygr210 Ygr210 subfamil 99.1 4.3E-10 9.2E-15 103.1 9.4 82 42-130 1-110 (318)
271 PTZ00416 elongation factor 2; 99.1 1.6E-09 3.5E-14 111.4 14.6 115 38-167 18-157 (836)
272 PRK09602 translation-associate 99.1 7.1E-10 1.5E-14 104.6 10.5 85 39-130 1-113 (396)
273 PF09439 SRPRB: Signal recogni 99.1 5.8E-10 1.3E-14 93.6 8.6 116 40-168 4-126 (181)
274 KOG0091 GTPase Rab39, small G 99.1 4E-10 8.8E-15 90.9 7.0 129 39-177 8-139 (213)
275 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 4.7E-10 1E-14 91.0 6.7 56 40-98 84-139 (141)
276 cd01856 YlqF YlqF. Proteins o 99.0 6.6E-10 1.4E-14 93.1 7.8 58 38-98 114-171 (171)
277 COG2229 Predicted GTPase [Gene 99.0 6.8E-09 1.5E-13 85.8 11.9 141 38-212 9-160 (187)
278 PLN00116 translation elongatio 99.0 4.6E-09 1E-13 108.2 13.1 115 38-167 18-163 (843)
279 cd01851 GBP Guanylate-binding 99.0 2.6E-08 5.7E-13 87.1 16.0 122 38-166 6-146 (224)
280 KOG0075 GTP-binding ADP-ribosy 99.0 1.8E-09 4E-14 85.7 7.5 128 26-167 6-135 (186)
281 PRK12289 GTPase RsgA; Reviewed 99.0 1E-09 2.2E-14 101.8 6.8 71 24-102 162-239 (352)
282 KOG0393 Ras-related small GTPa 99.0 7.9E-10 1.7E-14 93.4 5.2 116 38-167 3-122 (198)
283 COG0532 InfB Translation initi 98.9 3.3E-08 7.1E-13 94.1 16.2 114 38-167 4-120 (509)
284 PRK12288 GTPase RsgA; Reviewed 98.9 2.7E-09 5.8E-14 99.0 8.5 73 23-103 194-273 (347)
285 PRK07560 elongation factor EF- 98.9 2E-08 4.4E-13 102.2 15.6 115 38-167 19-152 (731)
286 KOG1145 Mitochondrial translat 98.9 6.6E-08 1.4E-12 91.8 17.3 146 38-213 152-299 (683)
287 PF03193 DUF258: Protein of un 98.9 7.3E-10 1.6E-14 91.2 3.5 73 23-103 24-103 (161)
288 KOG0448 Mitofusin 1 GTPase, in 98.9 1.4E-08 3.1E-13 98.5 12.6 118 37-167 107-274 (749)
289 cd01859 MJ1464 MJ1464. This f 98.9 5.4E-09 1.2E-13 86.0 8.6 58 37-97 99-156 (156)
290 KOG0462 Elongation factor-type 98.9 2.1E-08 4.6E-13 95.1 13.2 160 40-247 61-237 (650)
291 KOG0097 GTPase Rab14, small G 98.9 2.3E-08 5E-13 78.8 11.3 127 39-178 11-140 (215)
292 KOG4252 GTP-binding protein [S 98.9 1E-09 2.2E-14 89.9 3.7 124 39-175 20-145 (246)
293 PRK12740 elongation factor G; 98.9 2.3E-08 5E-13 101.0 14.1 109 45-168 1-126 (668)
294 TIGR03597 GTPase_YqeH ribosome 98.9 6.2E-09 1.3E-13 97.4 8.8 102 23-128 139-246 (360)
295 TIGR00157 ribosome small subun 98.9 4.5E-09 9.6E-14 93.2 7.4 71 23-102 109-186 (245)
296 TIGR01425 SRP54_euk signal rec 98.9 2E-07 4.4E-12 88.2 18.6 119 39-168 100-253 (429)
297 COG4917 EutP Ethanolamine util 98.9 1.4E-08 3E-13 78.7 8.5 100 41-168 3-104 (148)
298 KOG0074 GTP-binding ADP-ribosy 98.9 2.7E-08 5.9E-13 78.6 10.2 128 25-167 3-132 (185)
299 KOG0083 GTPase Rab26/Rab37, sm 98.8 4.2E-09 9E-14 82.3 4.6 118 43-172 1-121 (192)
300 PRK13768 GTPase; Provisional 98.8 7.8E-08 1.7E-12 85.7 13.4 81 88-170 98-178 (253)
301 KOG3883 Ras family small GTPas 98.8 9.4E-08 2E-12 76.6 12.2 128 38-175 8-139 (198)
302 PRK13796 GTPase YqeH; Provisio 98.8 1E-08 2.2E-13 96.1 7.7 72 24-99 146-222 (365)
303 KOG2486 Predicted GTPase [Gene 98.8 5.1E-08 1.1E-12 85.7 10.4 121 38-167 135-261 (320)
304 COG0012 Predicted GTPase, prob 98.8 3E-08 6.4E-13 90.9 9.3 85 39-130 2-108 (372)
305 KOG0070 GTP-binding ADP-ribosy 98.8 4E-08 8.6E-13 81.3 8.6 125 36-177 14-139 (181)
306 COG1162 Predicted GTPases [Gen 98.7 2.9E-08 6.2E-13 89.0 7.5 59 41-102 166-231 (301)
307 KOG1424 Predicted GTP-binding 98.7 2E-08 4.3E-13 94.7 6.7 63 39-104 314-376 (562)
308 PRK00098 GTPase RsgA; Reviewed 98.7 5.6E-08 1.2E-12 88.7 9.2 71 24-102 154-231 (298)
309 KOG0081 GTPase Rab27, small G 98.7 2.7E-08 5.9E-13 80.1 5.3 118 40-169 10-139 (219)
310 TIGR00092 GTP-binding protein 98.7 1.3E-07 2.9E-12 87.7 10.5 84 40-129 3-107 (368)
311 cd01854 YjeQ_engC YjeQ/EngC. 98.7 8.8E-08 1.9E-12 86.9 8.9 59 40-101 162-227 (287)
312 KOG1954 Endocytosis/signaling 98.7 1.9E-07 4E-12 85.0 10.8 119 40-167 59-224 (532)
313 TIGR00750 lao LAO/AO transport 98.7 2.5E-06 5.5E-11 77.9 18.1 36 26-61 21-56 (300)
314 COG5257 GCD11 Translation init 98.6 4.1E-07 8.8E-12 81.5 11.9 171 38-251 9-208 (415)
315 PRK14845 translation initiatio 98.6 6.6E-07 1.4E-11 93.0 13.9 103 50-168 472-592 (1049)
316 PTZ00099 rab6; Provisional 98.6 2.7E-06 6E-11 71.5 15.2 82 81-174 21-105 (176)
317 KOG1491 Predicted GTP-binding 98.6 1.6E-07 3.4E-12 84.7 7.8 88 35-129 16-124 (391)
318 PRK11889 flhF flagellar biosyn 98.6 4.1E-07 8.8E-12 84.8 10.7 119 38-168 240-391 (436)
319 PF00448 SRP54: SRP54-type pro 98.6 7.6E-07 1.6E-11 76.2 11.7 71 86-167 83-153 (196)
320 COG0050 TufB GTPases - transla 98.6 1.2E-06 2.5E-11 77.8 12.9 152 35-212 8-175 (394)
321 PF03308 ArgK: ArgK protein; 98.6 2.1E-06 4.5E-11 75.5 14.4 169 25-244 15-229 (266)
322 KOG0410 Predicted GTP binding 98.6 2E-07 4.4E-12 83.5 7.9 127 37-167 176-307 (410)
323 KOG1486 GTP-binding protein DR 98.6 1.2E-07 2.6E-12 82.1 6.2 105 39-150 62-167 (364)
324 KOG0447 Dynamin-like GTP bindi 98.5 9.6E-07 2.1E-11 84.0 12.3 126 40-171 309-496 (980)
325 COG3276 SelB Selenocysteine-sp 98.5 1.2E-06 2.6E-11 81.7 12.7 115 40-169 1-118 (447)
326 COG0480 FusA Translation elong 98.5 9.7E-07 2.1E-11 88.4 12.9 114 39-167 10-141 (697)
327 KOG0461 Selenocysteine-specifi 98.5 5.8E-06 1.3E-10 74.8 16.0 171 39-246 7-194 (522)
328 PRK14974 cell division protein 98.5 6.9E-06 1.5E-10 75.9 16.9 122 38-170 139-295 (336)
329 TIGR00064 ftsY signal recognit 98.5 7E-06 1.5E-10 73.9 16.2 74 85-169 153-232 (272)
330 KOG1532 GTPase XAB1, interacts 98.5 2.3E-06 5E-11 75.3 12.3 25 38-62 18-42 (366)
331 KOG0458 Elongation factor 1 al 98.5 2E-06 4.3E-11 82.5 12.6 145 37-198 175-355 (603)
332 PRK10416 signal recognition pa 98.5 9.5E-06 2.1E-10 74.6 16.2 119 38-167 113-272 (318)
333 KOG0071 GTP-binding ADP-ribosy 98.4 3.3E-06 7.2E-11 66.8 11.0 120 38-176 16-138 (180)
334 KOG0090 Signal recognition par 98.4 7E-07 1.5E-11 75.7 7.6 119 38-169 37-160 (238)
335 KOG0077 Vesicle coat complex C 98.4 1.1E-06 2.4E-11 71.4 8.4 116 38-168 19-135 (193)
336 COG0481 LepA Membrane GTPase L 98.4 2.8E-06 6E-11 79.9 11.8 160 41-248 11-189 (603)
337 COG1419 FlhF Flagellar GTP-bin 98.4 1.6E-06 3.5E-11 80.6 10.1 117 39-167 203-351 (407)
338 KOG2485 Conserved ATP/GTP bind 98.4 1E-06 2.3E-11 78.7 8.3 69 38-106 142-215 (335)
339 PF03029 ATP_bind_1: Conserved 98.4 2.6E-07 5.5E-12 81.5 4.3 75 88-168 92-170 (238)
340 KOG3886 GTP-binding protein [S 98.4 1.2E-06 2.7E-11 75.0 7.6 124 40-171 5-133 (295)
341 KOG2423 Nucleolar GTPase [Gene 98.4 2.5E-07 5.4E-12 84.8 3.5 73 25-100 291-365 (572)
342 PRK12727 flagellar biosynthesi 98.4 2.4E-05 5.2E-10 75.8 16.8 22 40-61 351-372 (559)
343 PRK12726 flagellar biosynthesi 98.3 4.3E-06 9.3E-11 77.8 11.1 118 39-167 206-355 (407)
344 PRK14722 flhF flagellar biosyn 98.3 4.8E-06 1E-10 77.8 11.6 24 39-62 137-160 (374)
345 TIGR03348 VI_IcmF type VI secr 98.3 5E-06 1.1E-10 88.9 12.6 139 21-167 86-256 (1169)
346 COG4108 PrfC Peptide chain rel 98.3 1.2E-05 2.7E-10 74.9 13.1 113 40-167 13-146 (528)
347 COG1703 ArgK Putative periplas 98.3 3.3E-05 7.1E-10 69.1 14.6 37 25-61 37-73 (323)
348 PRK14723 flhF flagellar biosyn 98.3 1.5E-05 3.3E-10 80.4 13.9 120 40-168 186-337 (767)
349 KOG2484 GTPase [General functi 98.3 8E-07 1.7E-11 81.7 4.4 74 24-100 235-310 (435)
350 COG2895 CysN GTPases - Sulfate 98.3 8.5E-06 1.8E-10 74.1 10.8 120 37-171 4-156 (431)
351 PRK14721 flhF flagellar biosyn 98.3 8.5E-06 1.8E-10 77.3 11.4 119 39-168 191-340 (420)
352 PRK00771 signal recognition pa 98.2 3.8E-05 8.3E-10 73.4 14.8 119 38-167 94-245 (437)
353 KOG0096 GTPase Ran/TC4/GSP1 (n 98.2 6E-06 1.3E-10 68.7 7.4 116 38-167 9-127 (216)
354 TIGR00073 hypB hydrogenase acc 98.2 3.9E-05 8.5E-10 66.2 12.6 25 38-62 21-45 (207)
355 PRK05703 flhF flagellar biosyn 98.2 1.3E-05 2.9E-10 76.5 10.5 116 41-167 223-370 (424)
356 KOG0076 GTP-binding ADP-ribosy 98.1 7.9E-06 1.7E-10 67.1 7.1 118 38-167 16-139 (197)
357 PRK06731 flhF flagellar biosyn 98.1 3.2E-05 6.8E-10 69.4 11.5 117 40-168 76-225 (270)
358 PRK10867 signal recognition pa 98.1 0.0001 2.2E-09 70.4 15.3 71 86-167 183-253 (433)
359 PRK12723 flagellar biosynthesi 98.1 0.00014 3.1E-09 68.5 15.2 119 38-167 173-325 (388)
360 PRK12724 flagellar biosynthesi 98.0 0.00015 3.2E-09 68.7 13.6 23 39-61 223-245 (432)
361 KOG1144 Translation initiation 98.0 7E-05 1.5E-09 73.9 11.7 112 39-166 475-604 (1064)
362 KOG0468 U5 snRNP-specific prot 98.0 7.9E-05 1.7E-09 72.7 11.5 114 38-166 127-261 (971)
363 KOG0072 GTP-binding ADP-ribosy 97.9 2.7E-05 5.8E-10 62.1 6.4 124 27-166 7-131 (182)
364 TIGR00959 ffh signal recogniti 97.9 0.00036 7.7E-09 66.6 15.2 72 85-167 181-252 (428)
365 cd03115 SRP The signal recogni 97.9 0.00028 6E-09 58.9 12.6 73 86-169 82-154 (173)
366 COG3523 IcmF Type VI protein s 97.9 6.1E-05 1.3E-09 79.0 9.6 132 42-180 128-278 (1188)
367 PRK06995 flhF flagellar biosyn 97.9 7.7E-05 1.7E-09 72.0 9.6 23 40-62 257-279 (484)
368 PRK01889 GTPase RsgA; Reviewed 97.8 2.2E-05 4.8E-10 73.4 5.0 59 40-101 196-261 (356)
369 cd03112 CobW_like The function 97.8 7.3E-05 1.6E-09 61.7 7.6 21 42-62 3-23 (158)
370 COG5192 BMS1 GTP-binding prote 97.8 0.00014 3.1E-09 69.8 10.2 135 36-192 66-200 (1077)
371 COG5258 GTPBP1 GTPase [General 97.8 0.00019 4E-09 66.2 10.5 120 36-169 114-270 (527)
372 KOG0460 Mitochondrial translat 97.8 0.00049 1.1E-08 62.6 12.6 151 36-212 51-217 (449)
373 KOG1487 GTP-binding protein DR 97.8 3E-05 6.5E-10 67.8 4.3 101 40-150 60-164 (358)
374 KOG0781 Signal recognition par 97.7 0.00027 5.9E-09 66.8 10.7 77 85-167 465-543 (587)
375 COG0541 Ffh Signal recognition 97.7 0.00015 3.2E-09 68.1 8.5 138 18-166 75-251 (451)
376 KOG0466 Translation initiation 97.6 0.00014 3E-09 65.1 6.8 174 38-256 37-252 (466)
377 KOG0446 Vacuolar sorting prote 97.6 5.9E-05 1.3E-09 75.5 4.7 139 24-169 13-214 (657)
378 KOG1673 Ras GTPases [General f 97.6 0.00056 1.2E-08 55.3 9.2 117 38-167 19-137 (205)
379 PRK10463 hydrogenase nickel in 97.6 0.0015 3.3E-08 59.0 12.9 25 38-62 103-127 (290)
380 KOG0467 Translation elongation 97.6 0.00023 4.9E-09 70.6 8.0 112 39-165 9-135 (887)
381 cd03114 ArgK-like The function 97.6 0.00061 1.3E-08 55.6 9.2 20 42-61 2-21 (148)
382 KOG0463 GTP-binding protein GP 97.4 0.00066 1.4E-08 62.4 8.7 24 39-62 133-156 (641)
383 PF09547 Spore_IV_A: Stage IV 97.4 0.0022 4.8E-08 60.3 12.0 34 28-61 6-39 (492)
384 COG0552 FtsY Signal recognitio 97.4 0.00083 1.8E-08 61.2 8.7 123 37-167 137-297 (340)
385 KOG0464 Elongation factor G [T 97.4 0.00013 2.9E-09 67.7 3.4 113 40-167 38-167 (753)
386 KOG1143 Predicted translation 97.3 0.00065 1.4E-08 62.4 6.9 120 38-171 166-320 (591)
387 KOG0780 Signal recognition par 97.3 0.0029 6.4E-08 58.6 10.9 88 38-128 100-222 (483)
388 PF02263 GBP: Guanylate-bindin 97.3 0.0029 6.3E-08 56.6 10.8 69 32-100 14-87 (260)
389 KOG1707 Predicted Ras related/ 97.2 0.0047 1E-07 59.9 12.2 116 36-167 422-539 (625)
390 KOG2749 mRNA cleavage and poly 97.2 0.005 1.1E-07 56.5 11.6 84 90-191 215-298 (415)
391 COG1618 Predicted nucleotide k 97.2 0.0062 1.4E-07 49.9 10.8 114 38-165 4-141 (179)
392 cd02038 FleN-like FleN is a me 97.2 0.0044 9.4E-08 49.9 10.0 99 44-166 5-109 (139)
393 KOG0082 G-protein alpha subuni 97.2 0.0059 1.3E-07 56.5 11.8 80 79-167 187-275 (354)
394 COG0194 Gmk Guanylate kinase [ 97.2 0.00026 5.6E-09 59.3 2.5 53 39-94 4-56 (191)
395 smart00010 small_GTPase Small 97.1 0.003 6.5E-08 48.9 8.4 23 40-62 1-23 (124)
396 PF00004 AAA: ATPase family as 97.1 0.0024 5.2E-08 50.1 7.8 21 42-62 1-21 (132)
397 cd03222 ABC_RNaseL_inhibitor T 97.1 0.011 2.3E-07 49.8 11.8 24 40-63 26-49 (177)
398 PF05673 DUF815: Protein of un 97.1 0.005 1.1E-07 54.1 10.0 97 36-162 49-147 (249)
399 KOG1534 Putative transcription 97.0 0.0006 1.3E-08 58.1 3.7 22 40-61 4-25 (273)
400 COG0378 HypB Ni2+-binding GTPa 97.0 0.0062 1.3E-07 51.5 9.4 22 40-61 14-35 (202)
401 PRK13900 type IV secretion sys 97.0 0.0033 7.1E-08 58.3 8.5 35 25-62 149-183 (332)
402 cd00071 GMPK Guanosine monopho 97.0 0.00095 2.1E-08 53.7 4.1 54 42-97 2-56 (137)
403 PRK14737 gmk guanylate kinase; 96.9 0.0012 2.5E-08 56.1 4.7 53 39-93 4-56 (186)
404 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.9 0.013 2.8E-07 47.4 10.6 24 40-63 27-50 (144)
405 KOG1533 Predicted GTPase [Gene 96.9 0.0011 2.3E-08 57.5 4.3 21 40-60 3-23 (290)
406 KOG3887 Predicted small GTPase 96.9 0.0049 1.1E-07 53.7 8.1 123 40-169 28-150 (347)
407 PF02492 cobW: CobW/HypB/UreG, 96.9 0.005 1.1E-07 51.7 8.2 71 86-167 84-154 (178)
408 TIGR03263 guanyl_kin guanylate 96.9 0.00058 1.3E-08 57.2 2.4 23 41-63 3-25 (180)
409 COG4988 CydD ABC-type transpor 96.9 0.0043 9.3E-08 60.4 8.4 24 41-64 349-372 (559)
410 PF06858 NOG1: Nucleolar GTP-b 96.8 0.0031 6.7E-08 42.4 5.0 45 118-165 12-58 (58)
411 cd01983 Fer4_NifH The Fer4_Nif 96.8 0.016 3.4E-07 42.4 9.7 68 42-130 2-69 (99)
412 PRK13851 type IV secretion sys 96.8 0.0076 1.6E-07 56.1 9.3 35 25-62 151-185 (344)
413 PRK08472 fliI flagellum-specif 96.8 0.00087 1.9E-08 63.9 3.0 88 40-130 158-256 (434)
414 COG1341 Predicted GTPase or GT 96.8 0.0089 1.9E-07 55.9 9.4 48 14-61 45-95 (398)
415 cd02042 ParA ParA and ParB of 96.8 0.017 3.7E-07 43.6 9.6 71 42-131 2-73 (104)
416 cd03111 CpaE_like This protein 96.8 0.023 4.9E-07 43.5 10.3 94 45-163 6-106 (106)
417 PRK14738 gmk guanylate kinase; 96.8 0.0019 4.1E-08 55.7 4.6 25 38-62 12-36 (206)
418 PF00005 ABC_tran: ABC transpo 96.7 0.0015 3.2E-08 52.0 3.5 23 41-63 13-35 (137)
419 PF13555 AAA_29: P-loop contai 96.7 0.0015 3.3E-08 44.8 3.0 20 41-60 25-44 (62)
420 COG1116 TauB ABC-type nitrate/ 96.7 0.0012 2.6E-08 57.8 3.0 24 41-64 31-54 (248)
421 PRK00300 gmk guanylate kinase; 96.7 0.0016 3.4E-08 55.8 3.6 25 39-63 5-29 (205)
422 PRK09270 nucleoside triphospha 96.7 0.0029 6.3E-08 55.4 5.4 37 27-63 21-57 (229)
423 COG3840 ThiQ ABC-type thiamine 96.7 0.0014 3.1E-08 54.8 2.9 23 41-63 27-49 (231)
424 PF13207 AAA_17: AAA domain; P 96.6 0.0021 4.4E-08 50.0 3.4 22 41-62 1-22 (121)
425 cd01130 VirB11-like_ATPase Typ 96.6 0.0034 7.4E-08 53.1 5.0 25 39-63 25-49 (186)
426 cd02032 Bchl_like This family 96.6 0.03 6.6E-07 50.0 11.2 21 40-60 1-21 (267)
427 cd02036 MinD Bacterial cell di 96.6 0.029 6.3E-07 46.5 10.4 63 88-166 64-126 (179)
428 KOG0459 Polypeptide release fa 96.6 0.0098 2.1E-07 55.4 7.9 140 37-190 77-251 (501)
429 COG1136 SalX ABC-type antimicr 96.5 0.002 4.4E-08 56.0 3.0 24 41-64 33-56 (226)
430 cd00009 AAA The AAA+ (ATPases 96.5 0.03 6.5E-07 43.9 9.7 25 39-63 19-43 (151)
431 COG3640 CooC CO dehydrogenase 96.5 0.029 6.3E-07 48.8 10.0 44 118-166 154-197 (255)
432 KOG0465 Mitochondrial elongati 96.5 0.0036 7.9E-08 61.0 4.8 114 40-168 40-170 (721)
433 cd03230 ABC_DR_subfamily_A Thi 96.4 0.034 7.3E-07 46.3 10.0 24 40-63 27-50 (173)
434 COG2274 SunT ABC-type bacterio 96.4 0.0089 1.9E-07 60.7 7.5 23 41-63 501-523 (709)
435 PRK07261 topology modulation p 96.4 0.0028 6.1E-08 52.9 3.1 23 40-62 1-23 (171)
436 cd01859 MJ1464 MJ1464. This f 96.3 0.045 9.8E-07 44.6 9.7 44 118-167 11-54 (156)
437 PF04665 Pox_A32: Poxvirus A32 96.3 0.0039 8.4E-08 54.9 3.4 25 38-62 12-36 (241)
438 KOG0054 Multidrug resistance-a 96.2 0.026 5.6E-07 60.8 9.9 25 39-63 547-571 (1381)
439 COG0563 Adk Adenylate kinase a 96.2 0.0038 8.2E-08 52.6 3.1 23 40-62 1-23 (178)
440 cd01857 HSR1_MMR1 HSR1/MMR1. 96.2 0.018 3.8E-07 46.3 6.9 46 118-167 10-55 (141)
441 PRK13833 conjugal transfer pro 96.2 0.006 1.3E-07 56.2 4.5 24 39-62 144-167 (323)
442 PF13671 AAA_33: AAA domain; P 96.2 0.0044 9.5E-08 49.6 3.2 21 42-62 2-22 (143)
443 PF13191 AAA_16: AAA ATPase do 96.2 0.0073 1.6E-07 50.3 4.6 38 25-62 9-47 (185)
444 PRK08903 DnaA regulatory inact 96.1 0.0097 2.1E-07 51.9 5.4 53 10-62 13-65 (227)
445 PF05621 TniB: Bacterial TniB 96.1 0.12 2.6E-06 46.9 12.4 136 10-164 35-190 (302)
446 PRK08118 topology modulation p 96.1 0.0045 9.7E-08 51.5 3.1 23 40-62 2-24 (167)
447 cd03225 ABC_cobalt_CbiO_domain 96.1 0.0046 1E-07 53.2 3.3 24 40-63 28-51 (211)
448 cd03238 ABC_UvrA The excision 96.1 0.0047 1E-07 51.9 3.1 22 40-61 22-43 (176)
449 cd03261 ABC_Org_Solvent_Resist 96.1 0.0049 1.1E-07 54.0 3.3 23 41-63 28-50 (235)
450 KOG4423 GTP-binding protein-li 96.1 0.00013 2.8E-09 60.7 -6.2 115 40-167 26-148 (229)
451 TIGR02673 FtsE cell division A 96.0 0.0055 1.2E-07 52.9 3.3 24 40-63 29-52 (214)
452 TIGR00960 3a0501s02 Type II (G 96.0 0.0054 1.2E-07 53.0 3.3 24 40-63 30-53 (216)
453 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.0 0.0055 1.2E-07 53.0 3.3 23 41-63 32-54 (218)
454 PRK10078 ribose 1,5-bisphospho 96.0 0.0055 1.2E-07 51.8 3.2 23 41-63 4-26 (186)
455 KOG0469 Elongation factor 2 [T 96.0 0.014 3.1E-07 55.8 6.2 112 39-166 19-162 (842)
456 cd03265 ABC_DrrA DrrA is the A 96.0 0.0056 1.2E-07 53.1 3.3 24 40-63 27-50 (220)
457 cd02019 NK Nucleoside/nucleoti 96.0 0.0062 1.3E-07 42.7 2.9 21 42-62 2-22 (69)
458 TIGR03608 L_ocin_972_ABC putat 96.0 0.0058 1.3E-07 52.3 3.3 23 41-63 26-48 (206)
459 COG3839 MalK ABC-type sugar tr 96.0 0.0051 1.1E-07 56.8 3.0 22 42-63 32-53 (338)
460 COG0488 Uup ATPase components 96.0 0.031 6.8E-07 54.9 8.6 26 39-64 348-373 (530)
461 TIGR00101 ureG urease accessor 96.0 0.0054 1.2E-07 52.6 3.0 24 39-62 1-24 (199)
462 cd03293 ABC_NrtD_SsuB_transpor 96.0 0.0059 1.3E-07 52.9 3.3 23 41-63 32-54 (220)
463 PRK00411 cdc6 cell division co 96.0 0.096 2.1E-06 49.5 11.8 41 22-62 36-78 (394)
464 KOG0066 eIF2-interacting prote 96.0 0.095 2.1E-06 49.7 11.2 23 40-62 614-636 (807)
465 TIGR01166 cbiO cobalt transpor 96.0 0.0061 1.3E-07 51.6 3.3 23 41-63 20-42 (190)
466 cd00066 G-alpha G protein alph 96.0 0.028 6E-07 51.8 7.8 82 77-167 151-241 (317)
467 TIGR02782 TrbB_P P-type conjug 96.0 0.0097 2.1E-07 54.3 4.7 24 39-62 132-155 (299)
468 PRK05480 uridine/cytidine kina 96.0 0.006 1.3E-07 52.5 3.2 25 38-62 5-29 (209)
469 cd03264 ABC_drug_resistance_li 96.0 0.0057 1.2E-07 52.7 3.1 23 41-63 27-49 (211)
470 cd03226 ABC_cobalt_CbiO_domain 96.0 0.0061 1.3E-07 52.2 3.2 24 40-63 27-50 (205)
471 cd03292 ABC_FtsE_transporter F 96.0 0.0062 1.3E-07 52.5 3.3 23 41-63 29-51 (214)
472 TIGR02322 phosphon_PhnN phosph 96.0 0.0052 1.1E-07 51.4 2.7 22 41-62 3-24 (179)
473 COG1126 GlnQ ABC-type polar am 96.0 0.0059 1.3E-07 52.5 3.0 23 41-63 30-52 (240)
474 cd03259 ABC_Carb_Solutes_like 96.0 0.0063 1.4E-07 52.5 3.3 23 41-63 28-50 (213)
475 cd03260 ABC_PstB_phosphate_tra 96.0 0.006 1.3E-07 53.2 3.2 24 40-63 27-50 (227)
476 PF13238 AAA_18: AAA domain; P 95.9 0.0066 1.4E-07 47.3 3.1 21 42-62 1-21 (129)
477 cd00820 PEPCK_HprK Phosphoenol 95.9 0.0062 1.4E-07 46.7 2.8 21 40-60 16-36 (107)
478 TIGR00150 HI0065_YjeE ATPase, 95.9 0.04 8.7E-07 44.0 7.5 35 28-62 11-45 (133)
479 cd01131 PilT Pilus retraction 95.9 0.0053 1.2E-07 52.5 2.7 22 42-63 4-25 (198)
480 cd03216 ABC_Carb_Monos_I This 95.9 0.0069 1.5E-07 50.1 3.3 24 40-63 27-50 (163)
481 COG4962 CpaF Flp pilus assembl 95.9 0.011 2.4E-07 54.2 4.9 25 39-63 173-197 (355)
482 cd03269 ABC_putative_ATPase Th 95.9 0.0068 1.5E-07 52.1 3.3 23 41-63 28-50 (210)
483 cd03224 ABC_TM1139_LivF_branch 95.9 0.0066 1.4E-07 52.6 3.2 24 40-63 27-50 (222)
484 cd03262 ABC_HisP_GlnQ_permease 95.9 0.0069 1.5E-07 52.1 3.3 23 41-63 28-50 (213)
485 cd03229 ABC_Class3 This class 95.9 0.0072 1.6E-07 50.7 3.3 24 40-63 27-50 (178)
486 PRK13894 conjugal transfer ATP 95.9 0.011 2.4E-07 54.5 4.7 25 38-62 147-171 (319)
487 cd03258 ABC_MetN_methionine_tr 95.9 0.0068 1.5E-07 53.0 3.3 24 40-63 32-55 (233)
488 TIGR02211 LolD_lipo_ex lipopro 95.9 0.007 1.5E-07 52.5 3.3 23 41-63 33-55 (221)
489 TIGR02315 ABC_phnC phosphonate 95.9 0.0068 1.5E-07 53.3 3.3 23 41-63 30-52 (243)
490 PF13521 AAA_28: AAA domain; P 95.9 0.005 1.1E-07 50.7 2.2 22 41-62 1-22 (163)
491 cd03263 ABC_subfamily_A The AB 95.9 0.0072 1.6E-07 52.3 3.3 23 41-63 30-52 (220)
492 KOG0054 Multidrug resistance-a 95.9 0.0058 1.3E-07 65.6 3.1 24 39-62 1166-1189(1381)
493 COG4525 TauB ABC-type taurine 95.9 0.011 2.5E-07 50.1 4.2 23 40-62 32-54 (259)
494 cd03218 ABC_YhbG The ABC trans 95.8 0.0074 1.6E-07 52.7 3.3 23 41-63 28-50 (232)
495 TIGR00235 udk uridine kinase. 95.8 0.0074 1.6E-07 51.9 3.2 25 38-62 5-29 (207)
496 TIGR01189 ccmA heme ABC export 95.8 0.0079 1.7E-07 51.3 3.3 24 40-63 27-50 (198)
497 PRK06217 hypothetical protein; 95.8 0.0076 1.6E-07 50.8 3.2 23 40-62 2-24 (183)
498 PRK15177 Vi polysaccharide exp 95.8 0.0076 1.6E-07 52.2 3.2 24 40-63 14-37 (213)
499 cd03266 ABC_NatA_sodium_export 95.8 0.0077 1.7E-07 52.1 3.3 24 40-63 32-55 (218)
500 cd03235 ABC_Metallic_Cations A 95.8 0.0074 1.6E-07 52.0 3.1 23 41-63 27-49 (213)
No 1
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=100.00 E-value=3.1e-63 Score=443.94 Aligned_cols=305 Identities=69% Similarity=1.107 Sum_probs=284.9
Q ss_pred ccchh-hhhccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEE
Q 021699 3 MASQV-IREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVS 81 (309)
Q Consensus 3 ~~~~~-~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~ 81 (309)
|||+. .+||.|++++|+++|++|.+++.++++++.+.++|+++|++|+||||++|+|+|++.+.++...+++..+....
T Consensus 1 ~~~~~~~~~w~g~~~~~~~tq~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~ 80 (313)
T TIGR00991 1 MASPQTPREWVGIQQFPPATQTKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS 80 (313)
T ss_pred CCCcccCcceeccccCCHHHHHHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE
Confidence 66644 49999999999999999999999999999999999999999999999999999999878888877777666666
Q ss_pred eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEE
Q 021699 82 RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 161 (309)
Q Consensus 82 ~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~ 161 (309)
...+|..+.||||||+.+....++++.+.++.++...++|++|||+++|..+++..|..+++.+.+.||+.+|+++|+|+
T Consensus 81 ~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVf 160 (313)
T TIGR00991 81 RTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVL 160 (313)
T ss_pred EEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEE
Confidence 67789999999999999877777777777877777779999999999988789999999999999999999999999999
Q ss_pred ecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHH
Q 021699 162 THAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTIT 241 (309)
Q Consensus 162 tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~ 241 (309)
||+|..++++.++++|+.++++.++++|+++.+..+.+++...+|+++++|+++|.+|..++++||+.+.|++.|+++|.
T Consensus 161 Th~d~~~pd~~~~e~fv~~~~~~lq~~i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~~~~ 240 (313)
T TIGR00991 161 THAQFSPPDGLEYNDFFSKRSEALLRVIHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEIT 240 (313)
T ss_pred ECCccCCCCCCCHHHHHHhcHHHHHHHHHHHhcccccccccccCCEEEEecCCcccCCCCCCeECCCCCccHHHHHHHHH
Confidence 99999989999999999999999999999999888877788889999999999999999999999999999999999999
Q ss_pred HHHhcCCCcceeccccccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhhhcccchhhhhhc
Q 021699 242 EVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVWARASR 307 (309)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (309)
.++.+..+++.+|++++.++.|+.+|++|+|+..++|++|++||++++|++|++++++++||.|..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (313)
T TIGR00991 241 EVISNGSKPIHVDKKLIDGPNPNNRGKMFIPLIFAVQYLLVVKPIRRAIHADIANEKKDAWEQRDR 306 (313)
T ss_pred HHHhCCCCCeEecHHHccCCCCCcccccHHHHHHHHHHHhhhHHHHHHHHHHHhhccCcchhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999975
No 2
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=100.00 E-value=7.2e-40 Score=313.81 Aligned_cols=252 Identities=33% Similarity=0.517 Sum_probs=218.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC---cHHHHHHHHHhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV---NYHAIQLIKRFL 115 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~---~~~~~~~i~~~~ 115 (309)
.++|+|+|++|+|||||+|+|+|+..+.++...+.|..........+|..+.||||||+.+.... +++++..+.+++
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~L 197 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFI 197 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHH
Confidence 47899999999999999999999988777776566666666666678999999999999986432 335666666777
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC-----CCHHHHHHhhhHHHHHhhc
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR-----LDYEVFCSKRSEALLKFVS 190 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~-----~~~~~~~~~~~~~l~~~i~ 190 (309)
...++|+||||++++..+.+..+..+++.|.+.||+.+|+++|||+|++|..+|++ .++++|+.++.+.+++.|+
T Consensus 198 sk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~rs~~Lq~~Ir 277 (763)
T TIGR00993 198 KKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQRSHIVQQAIG 277 (763)
T ss_pred hcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhhChHHHHHHHH
Confidence 66789999999998755555678899999999999999999999999999988764 6899999999999999999
Q ss_pred ccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHH-HHHhcCCCcceeccccccCCCCCCCCcc
Q 021699 191 PSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTIT-EVVLNGSKALLVDKKLVEGPNPNEKGKI 269 (309)
Q Consensus 191 ~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~-~~~~~~~~~~~~~~~~~~~~~p~~~g~~ 269 (309)
+|.+......+...+||.+|+|+++|.+|..++++||+.+.|++.|+..|. ..+.++...++..+....++.|+.+|++
T Consensus 278 q~~g~~~l~n~~~~~Pv~lvEN~~~C~~N~~gekVLPnG~~W~p~llllc~~~k~l~~a~~l~~~q~~~~~~~~~~~~~~ 357 (763)
T TIGR00993 278 QAVGDLRLMNPNLMNPVSLVENHPACRKNRAGQKVLPNGQVWKPHLLLLCYSSKILSEANALLKLQENIDGRRPFGFRSR 357 (763)
T ss_pred HhcCcceecccCCCCCEEEEecCCcccCCCCCceeCCCCchhHHHHHHHHHHhhhhccccccccccccccCCCccccccc
Confidence 998755443355678999999999999999999999999999999999888 8888999999999999999999999999
Q ss_pred cccHHHHHHHHHHhhhhHHHH
Q 021699 270 LIPFIFAFQYFFIIKPLIRAI 290 (309)
Q Consensus 270 ~~~l~~~~q~~~~~~~~~~~~ 290 (309)
++||+|+.|++|++||.-+.-
T Consensus 358 ~~plp~~ls~ll~~r~~~k~~ 378 (763)
T TIGR00993 358 APPLPYLLSWLLQSRAHPKLP 378 (763)
T ss_pred CCchHHHHHHHhhcCCCCCCh
Confidence 999999999999999865543
No 3
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=100.00 E-value=2.7e-39 Score=285.91 Aligned_cols=244 Identities=50% Similarity=0.693 Sum_probs=203.8
Q ss_pred hhccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeE
Q 021699 9 REWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT 88 (309)
Q Consensus 9 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~ 88 (309)
++|.|+..+|++++..+.++..++++....+++|+|+|++|+|||||+|+|+|...+.++...++|.....+....+|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~ 80 (249)
T cd01853 1 REWTGFQFFPDAAQTKALELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFK 80 (249)
T ss_pred CCccccccCcHHHHHHHHHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeE
Confidence 47999999999999999999999999888999999999999999999999999988888888888888887778889999
Q ss_pred EEEEeCCCCCCCC---CCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021699 89 LNIVDTPGLIEGG---YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 89 l~liDTPG~~~~~---~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
+.||||||+.+.. ..++++++.+.+++...++|++|||.++|..+++..|..+++.+.+.||.++|+++++|+||+|
T Consensus 81 i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d 160 (249)
T cd01853 81 LNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAA 160 (249)
T ss_pred EEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCc
Confidence 9999999998763 2445666677777777789999999999988888999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021699 166 LSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
..+|++.....+..++...++..+.+++...........+|+++++|++.|.+|..++++||+.+.|++.|+..|.....
T Consensus 161 ~~~p~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~~~~vlp~g~~w~~~~~~~~~~~~~ 240 (249)
T cd01853 161 SSPPDGLNGTPFSYDRFVAQRSHIVQQAIQQAAGDPRLENPVSLVENHPRCRKNREGEKVLPNGTVWKPQLLLLCYSVKL 240 (249)
T ss_pred cCCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccCccccCCEEEEeCCCcccCCCCCCeECCCCCccHHHHHHHHHHHHh
Confidence 99888775554444444444444433321111122345689999999999999999999999999999999999998887
Q ss_pred cCCCcce
Q 021699 246 NGSKALL 252 (309)
Q Consensus 246 ~~~~~~~ 252 (309)
......+
T Consensus 241 ~~~~~~~ 247 (249)
T cd01853 241 LSEANIL 247 (249)
T ss_pred ccccccc
Confidence 7655443
No 4
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.95 E-value=6.8e-28 Score=204.31 Aligned_cols=248 Identities=18% Similarity=0.271 Sum_probs=179.9
Q ss_pred hhccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCC-------CCCC-CeeEEE
Q 021699 9 REWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEG-PRPVMV 80 (309)
Q Consensus 9 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~-------~~~t-~~~~~~ 80 (309)
-.|+|+....++.+. ++-+.+.+ |+|+|+|.+|.||||++|+|+...+...+.. +.++ .+..++
T Consensus 24 lgyvGidtI~~Qm~~-------k~mk~GF~-FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~th 95 (336)
T KOG1547|consen 24 LGYVGIDTIIEQMRK-------KTMKTGFD-FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITH 95 (336)
T ss_pred cccccHHHHHHHHHH-------HHHhccCc-eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeee
Confidence 468888776666443 33445654 9999999999999999999998754332211 1111 123344
Q ss_pred EeeeCCe--EEEEEeCCCCCCCC-----------CCcHHHHHHHHH--------hhhcCCCcEEEEEEeCCccccChhHH
Q 021699 81 SRSRAGF--TLNIVDTPGLIEGG-----------YVNYHAIQLIKR--------FLLNKTIDVLLYVDRLDVYRVDNLDK 139 (309)
Q Consensus 81 ~~~~~g~--~l~liDTPG~~~~~-----------~~~~~~~~~i~~--------~~~~~~~d~il~v~~~d~~~~~~~d~ 139 (309)
.++.+|+ +++++|||||+|.- +.++++.+++++ .+.+.++|||||+++.+++.+.+.|.
T Consensus 96 vieE~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDi 175 (336)
T KOG1547|consen 96 VIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDI 175 (336)
T ss_pred eeeecceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccH
Confidence 5556676 68999999999842 233344444433 23467899999999999999999999
Q ss_pred HHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCC
Q 021699 140 QITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKN 219 (309)
Q Consensus 140 ~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~ 219 (309)
++++.|.+. .++|.|+.|+|.. ++++. .+|++.|+++ +. ..+|.+++.+. +..
T Consensus 176 eflkrLt~v------vNvvPVIakaDtl-----TleEr-----~~FkqrI~~e--l~-----~~~i~vYPq~~----fde 228 (336)
T KOG1547|consen 176 EFLKRLTEV------VNVVPVIAKADTL-----TLEER-----SAFKQRIRKE--LE-----KHGIDVYPQDS----FDE 228 (336)
T ss_pred HHHHHHhhh------heeeeeEeecccc-----cHHHH-----HHHHHHHHHH--HH-----hcCcccccccc----ccc
Confidence 999999998 6999999999976 34443 5677777654 22 22356655432 222
Q ss_pred cCCcccCCCCCCchHHHHHHHHHHHhcCCCcceeccccccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhhhcc
Q 021699 220 ENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEA 298 (309)
Q Consensus 220 ~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~~~~ 298 (309)
+..++.+ -..+.+.|++++.++.+++.++++.++||+ .+||.+.+....+|.|.++...+++.+-+|+++--
T Consensus 229 d~ed~~l------N~kvR~~iPFAVVGsd~e~~vnG~~vlGRk-trWg~IeVen~nhCeF~~LRdfliRtHlQdlke~T 300 (336)
T KOG1547|consen 229 DLEDKTL------NDKVRESIPFAVVGSDKEIQVNGRRVLGRK-TRWGIIEVENLNHCEFVLLRDFLIRTHLQDLKETT 300 (336)
T ss_pred chhHHHH------HHHHHhhCCeEEecccceEEEcCeEeeccc-cccceEEecccccchhHHHHHHHHHHHHHHHHHHh
Confidence 2222222 245567899999999999999999999999 99999999999999999977789999999998764
No 5
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.95 E-value=1.7e-27 Score=206.76 Aligned_cols=191 Identities=28% Similarity=0.402 Sum_probs=142.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccC-CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh--h
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVST-FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL--L 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~-~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~--~ 116 (309)
++|+|+|++|+||||++|+|+|.+.+..+. ..++|..+..+...++|..+.||||||+.+....+++..+.+.+++ +
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 689999999999999999999999876653 4567788888888999999999999999988887777777787765 4
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhh-HHHHHhhcccccc
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRS-EALLKFVSPSTWM 195 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~-~~l~~~i~~~~~~ 195 (309)
.+++|++|||++++ +++..+...++.+.+.||..+|+++|||+|++|...++. ++++++... ..++++++.|..
T Consensus 81 ~~g~ha~llVi~~~--r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~--~~~~l~~~~~~~l~~li~~c~~- 155 (212)
T PF04548_consen 81 SPGPHAFLLVIPLG--RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDS--LEDYLKKESNEALQELIEKCGG- 155 (212)
T ss_dssp TT-ESEEEEEEETT--B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT--HHHHHHHHHHHHHHHHHHHTTT-
T ss_pred cCCCeEEEEEEecC--cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccccc--HHHHHhccCchhHhHHhhhcCC-
Confidence 67899999998877 899999999999999999999999999999999765544 899998544 679999988743
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCcceec
Q 021699 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVD 254 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~~~~ 254 (309)
..++.++... .......++.+|++.|..++..++..+...
T Consensus 156 ----------R~~~f~n~~~---------~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~ 195 (212)
T PF04548_consen 156 ----------RYHVFNNKTK---------DKEKDESQVSELLEKIEEMVQENGGQYYSN 195 (212)
T ss_dssp ----------CEEECCTTHH---------HHHHHHHHHHHHHHHHHHHHHHTTTT--B-
T ss_pred ----------EEEEEecccc---------chhhhHHHHHHHHHHHHHHHHHcCCCCCCh
Confidence 2233322100 000112458999999999998886554433
No 6
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.94 E-value=3.3e-28 Score=225.00 Aligned_cols=239 Identities=22% Similarity=0.311 Sum_probs=167.9
Q ss_pred hhccccCCCChhhHHHHHHHHHHhhhcC-CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe
Q 021699 9 REWMGIQQFPPATQTKLLELLGKLKQEN-VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF 87 (309)
Q Consensus 9 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~-~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~ 87 (309)
.++.|+.+|.+++.+.+. .-+.....+ .++++|+++|+||+|||||+|+|+|++...+++.+++|++++...++++|+
T Consensus 148 ~Hg~Gi~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~ 226 (444)
T COG1160 148 EHGRGIGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR 226 (444)
T ss_pred hhccCHHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe
Confidence 456777766666444331 111111222 257999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCCCCcH--HHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021699 88 TLNIVDTPGLIEGGYVNY--HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~--~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
++.++||+|+.......+ +.++..+..-....+|+|++|++... .++++|.+++..+.+.. +++++|+||||
T Consensus 227 ~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~-~~~~qD~~ia~~i~~~g-----~~~vIvvNKWD 300 (444)
T COG1160 227 KYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATE-GISEQDLRIAGLIEEAG-----RGIVIVVNKWD 300 (444)
T ss_pred EEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCC-CchHHHHHHHHHHHHcC-----CCeEEEEEccc
Confidence 999999999987666554 33444444444578999999955543 58999999999988763 79999999999
Q ss_pred CCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHH----HHH
Q 021699 166 LSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVK----TIT 241 (309)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~----~i~ 241 (309)
+.+.++.+.+++. +.++..+.. ....|++++|+. ++.+.+++++. +....+ ++.
T Consensus 301 l~~~~~~~~~~~k----~~i~~~l~~----------l~~a~i~~iSA~----~~~~i~~l~~~----i~~~~~~~~~ri~ 358 (444)
T COG1160 301 LVEEDEATMEEFK----KKLRRKLPF----------LDFAPIVFISAL----TGQGLDKLFEA----IKEIYECATRRIS 358 (444)
T ss_pred cCCchhhHHHHHH----HHHHHHhcc----------ccCCeEEEEEec----CCCChHHHHHH----HHHHHHHhccccC
Confidence 9866544444443 334443332 234899999885 44442222221 111111 233
Q ss_pred HHHhcCCCcceeccccccCCCCCCCCcccccHHHHHHHHH
Q 021699 242 EVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFF 281 (309)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~l~~~~q~~~ 281 (309)
+...+. +++.+...++||...|+++ +++|++|..-
T Consensus 359 Ts~LN~----~l~~a~~~~pP~~~~G~r~-ki~Ya~q~~~ 393 (444)
T COG1160 359 TSLLNR----VLEDAVAKHPPPVRYGRRL-KIKYATQVST 393 (444)
T ss_pred HHHHHH----HHHHHHHhCCCCccCCceE-EEEEEecCCC
Confidence 333333 6777888888888889996 9999999864
No 7
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.94 E-value=1.4e-25 Score=192.32 Aligned_cols=184 Identities=22% Similarity=0.306 Sum_probs=142.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccC-CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh--h
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVST-FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL--L 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~-~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~--~ 116 (309)
++|+++|++|+|||||+|+|+|.+.+..+. .+++|..+......++|..+.||||||+.+.....+.....+.+++ .
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 589999999999999999999998765553 4567888888788889999999999999987654444444554443 3
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccccc
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMK 196 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 196 (309)
.+++|++|||++++ +++..|..+++.+.+.||..+++++++|+|++|...++ ++++++......++.+++.|..
T Consensus 81 ~~g~~~illVi~~~--~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~--~~~~~~~~~~~~l~~l~~~c~~-- 154 (196)
T cd01852 81 APGPHAFLLVVPLG--RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGG--TLEDYLENSCEALKRLLEKCGG-- 154 (196)
T ss_pred CCCCEEEEEEEECC--CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCC--cHHHHHHhccHHHHHHHHHhCC--
Confidence 47899999998776 48899999999999999999999999999999976443 7899998877899999998743
Q ss_pred ccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCC
Q 021699 197 KKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGS 248 (309)
Q Consensus 197 ~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~ 248 (309)
..++.++... + .....++.+|++.|..++.+++
T Consensus 155 ---------r~~~f~~~~~---~-------~~~~~q~~~Ll~~i~~~~~~~~ 187 (196)
T cd01852 155 ---------RYVAFNNKAK---G-------EEQEQQVKELLAKVESMVKENG 187 (196)
T ss_pred ---------eEEEEeCCCC---c-------chhHHHHHHHHHHHHHHHHhcC
Confidence 2222232210 0 1112358999999999998743
No 8
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.91 E-value=2.6e-23 Score=187.40 Aligned_cols=247 Identities=19% Similarity=0.256 Sum_probs=169.5
Q ss_pred hccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCccccc---CCCC----CCCeeEE--E
Q 021699 10 EWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVS---TFQS----EGPRPVM--V 80 (309)
Q Consensus 10 ~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~---~~~~----~t~~~~~--~ 80 (309)
.+.|+.++|.+...... ..+ -+|+|+++|.+|.|||||+|+|++....... +..+ .|..... .
T Consensus 2 ~~vgi~~l~~~r~~~~~-------k~G-i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~ 73 (373)
T COG5019 2 GYVGISNLPNQRHRKLS-------KKG-IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKA 73 (373)
T ss_pred CcCCcCcchHHHHHHHH-------hcC-CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeee
Confidence 47899999999766433 344 4699999999999999999999998432211 1111 1111222 2
Q ss_pred EeeeCCe--EEEEEeCCCCCCCCCCc---HHHHHHHH----H------------hhhcCCCcEEEEEEeCCccccChhHH
Q 021699 81 SRSRAGF--TLNIVDTPGLIEGGYVN---YHAIQLIK----R------------FLLNKTIDVLLYVDRLDVYRVDNLDK 139 (309)
Q Consensus 81 ~~~~~g~--~l~liDTPG~~~~~~~~---~~~~~~i~----~------------~~~~~~~d~il~v~~~d~~~~~~~d~ 139 (309)
.+..+|. +++++||||++|.-... +-+.+.|. . .+.+.++|||||++.+.++++++.|.
T Consensus 74 ~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DI 153 (373)
T COG5019 74 ELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDI 153 (373)
T ss_pred eeecCCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHH
Confidence 2333555 68999999999843221 11222221 1 12367899999999999999999999
Q ss_pred HHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCC
Q 021699 140 QITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKN 219 (309)
Q Consensus 140 ~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~ 219 (309)
.+|+.|.+. .++|.|+.|+|....++ ..++ .+.+++.+..+ .||++.- +.+
T Consensus 154 e~Mk~ls~~------vNlIPVI~KaD~lT~~E--l~~~----K~~I~~~i~~~-----------nI~vf~p------yd~ 204 (373)
T COG5019 154 EAMKRLSKR------VNLIPVIAKADTLTDDE--LAEF----KERIREDLEQY-----------NIPVFDP------YDP 204 (373)
T ss_pred HHHHHHhcc------cCeeeeeeccccCCHHH--HHHH----HHHHHHHHHHh-----------CCceeCC------CCc
Confidence 999999988 59999999999874332 1111 23444444332 3677631 222
Q ss_pred cCCcccCCCCCCchHHHHHHHHHHHhcCCCcceeccccccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhhhc
Q 021699 220 ENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKE 297 (309)
Q Consensus 220 ~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~~~ 297 (309)
+..+ ++.-+-...|+..+++++.++...+..++..++||. |+||...|...-++.|..+...+.+.+-.|++.-
T Consensus 205 e~~~---~e~~e~~~~l~~~~PFAII~S~~~~~~~~~~vrgR~-YpWG~v~Idd~~hsDF~~Lr~~Li~thL~~L~~~ 278 (373)
T COG5019 205 EDDE---DESLEENQDLRSLIPFAIIGSNTEIENGGEQVRGRK-YPWGVVEIDDEEHSDFKKLRNLLIRTHLQELKET 278 (373)
T ss_pred cccc---hhhHHHHHHHhhcCCeEEEeccceeccCCceeeeec-cCCcceecCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 2111 011112467888999999999888888888899999 9999999999999999997777888877777654
No 9
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.90 E-value=8.9e-23 Score=177.46 Aligned_cols=213 Identities=25% Similarity=0.361 Sum_probs=162.4
Q ss_pred hhhhccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC
Q 021699 7 VIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG 86 (309)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g 86 (309)
+-.--.|+..+|....+...++.++++-...++++|+++|+||+|||||||+||+.+...++..+.++.........+++
T Consensus 7 l~~~~~~~~~~~~~~se~~l~~~~~~~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~ 86 (296)
T COG3596 7 LNNVLKGLLGLPSLLSERILEQLRMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG 86 (296)
T ss_pred hhhhhhhhccChHHHHHHHHHHhhhhhhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc
Confidence 44556788899999999988888877777888999999999999999999999988777777776666555555556778
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021699 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
..++||||||+++....+.++.+.++.++ ++.|++|++++.+. +.-..|..++..+.-.... +++++++|.+|.
T Consensus 87 ~~l~lwDtPG~gdg~~~D~~~r~~~~d~l--~~~DLvL~l~~~~d-raL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~ 160 (296)
T COG3596 87 ENLVLWDTPGLGDGKDKDAEHRQLYRDYL--PKLDLVLWLIKADD-RALGTDEDFLRDVIILGLD---KRVLFVVTQADR 160 (296)
T ss_pred cceEEecCCCcccchhhhHHHHHHHHHHh--hhccEEEEeccCCC-ccccCCHHHHHHHHHhccC---ceeEEEEehhhh
Confidence 89999999999998888878777777777 78999999977765 4445566777776655433 799999999998
Q ss_pred CCCC----------CCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCc-hHH
Q 021699 167 SLPD----------RLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW-IPN 235 (309)
Q Consensus 167 ~~~~----------~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w-~~~ 235 (309)
..|. ....++|++++.+.+.++++.- -|++.++. . ..| ++.
T Consensus 161 a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V------------~pV~~~~~----r------------~~wgl~~ 212 (296)
T COG3596 161 AEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEV------------KPVVAVSG----R------------LPWGLKE 212 (296)
T ss_pred hccccccccccCCCCHHHHHHHHHHHHHHHHHHhhc------------CCeEEecc----c------------cCccHHH
Confidence 6552 1235556665556666666542 58877761 1 235 899
Q ss_pred HHHHHHHHHhcCCCccee
Q 021699 236 LVKTITEVVLNGSKALLV 253 (309)
Q Consensus 236 L~~~i~~~~~~~~~~~~~ 253 (309)
|...++++++.+.+....
T Consensus 213 l~~ali~~lp~e~rs~~a 230 (296)
T COG3596 213 LVRALITALPVEARSPLA 230 (296)
T ss_pred HHHHHHHhCcccccchhh
Confidence 999999999988776543
No 10
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.3e-23 Score=187.44 Aligned_cols=248 Identities=17% Similarity=0.215 Sum_probs=165.5
Q ss_pred ccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccC------CCCCCCe--eEEEEe
Q 021699 11 WMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST------FQSEGPR--PVMVSR 82 (309)
Q Consensus 11 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~------~~~~t~~--~~~~~~ 82 (309)
+.|+.++|++..+. ...+|. .|+++++|.+|.|||||||+|++.+...-.. .+..|.. ......
T Consensus 1 ~vg~~~lP~q~~r~-------~~KkG~-~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~i 72 (366)
T KOG2655|consen 1 YVGFANLPNQVHRK-------SVKKGF-DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEI 72 (366)
T ss_pred CCccccChHHHHHH-------HHhcCC-ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeee
Confidence 46999999997543 334554 4999999999999999999999885322100 1111222 222333
Q ss_pred eeCCe--EEEEEeCCCCCCCCCC-----------cHHHHHHHHH-------hhhcCCCcEEEEEEeCCccccChhHHHHH
Q 021699 83 SRAGF--TLNIVDTPGLIEGGYV-----------NYHAIQLIKR-------FLLNKTIDVLLYVDRLDVYRVDNLDKQIT 142 (309)
Q Consensus 83 ~~~g~--~l~liDTPG~~~~~~~-----------~~~~~~~i~~-------~~~~~~~d~il~v~~~d~~~~~~~d~~~l 142 (309)
+.+|. +++|+||||++|.-.. +.++.+++.. .+.+.++|||||++++.++++++.|..+|
T Consensus 73 ee~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~M 152 (366)
T KOG2655|consen 73 EENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFM 152 (366)
T ss_pred cCCCeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHH
Confidence 44565 6799999999984221 1111122211 12356899999999999988999999999
Q ss_pred HHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCC
Q 021699 143 RAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNEND 222 (309)
Q Consensus 143 ~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~ 222 (309)
+.+.+. .++|.|+.|+|...+++ . ......+.+.|..+ .|+++...-. ..
T Consensus 153 k~l~~~------vNiIPVI~KaD~lT~~E-----l-~~~K~~I~~~i~~~-----------nI~vf~fp~~---~~---- 202 (366)
T KOG2655|consen 153 KKLSKK------VNLIPVIAKADTLTKDE-----L-NQFKKRIRQDIEEH-----------NIKVFDFPTD---ES---- 202 (366)
T ss_pred HHHhcc------ccccceeeccccCCHHH-----H-HHHHHHHHHHHHHc-----------CcceecCCCC---cc----
Confidence 999987 59999999999874432 2 11123333333322 3555433211 00
Q ss_pred cccCCCCCCchHHHHHHHHHHHhcCCCcceecccc-ccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhhhcccc
Q 021699 223 EKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKL-VEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKP 300 (309)
Q Consensus 223 ~~~l~~~~~w~~~L~~~i~~~~~~~~~~~~~~~~~-~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~ 300 (309)
...+ ......|...+++++.++...+-.++.. ++||. |+||...|...-++.|..+...+.+.+-.|++.--..
T Consensus 203 d~~~---~~~~~~l~~~~PFAIigs~~~~e~~G~~~vrgR~-YpWG~veien~~h~DF~~Lr~~Li~thl~dLk~~T~~ 277 (366)
T KOG2655|consen 203 DEEL---KEEEQDLKSSIPFAIIGSNTEIEEKGKKRVRGRK-YPWGTVEIENPEHCDFKKLRNLLIRTHLEDLKDTTNN 277 (366)
T ss_pred hhhh---HHHHHHHhhcCCeEEEecCceeecCCceEeecee-cCCceeeccCCCcchHHHHHHHHHHHHHHHHHHHHhH
Confidence 1111 1125677888999999987776666655 88999 9999999999999999997777888877777665433
No 11
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.89 E-value=1.7e-22 Score=181.86 Aligned_cols=235 Identities=15% Similarity=0.227 Sum_probs=156.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCC-------CCCCC--eeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHH
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGP--RPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHA 107 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~-------~~~t~--~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~ 107 (309)
.++|+|+|.+|+|||||+|+|++......... ...|. .........+|. +++||||||+++..... ..
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~-~~ 82 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNS-DC 82 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccch-hh
Confidence 59999999999999999999999876544321 11222 223334455664 69999999998754321 11
Q ss_pred HHHHHH--------------------hhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 108 IQLIKR--------------------FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 108 ~~~i~~--------------------~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+.+.. .+.+.++|+|+|+++...+++.+.|.++++.+.+. .|+++|+||+|+.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~~------v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSKR------VNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhcc------CCEEEEEECCCcC
Confidence 121111 12245799999998776656888899999888752 6999999999986
Q ss_pred CCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021699 168 LPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
.+++ ... ..+.+++.+... +++++...+. ... +.. ..-...+...+++++.++
T Consensus 157 ~~~e--~~~----~k~~i~~~l~~~-----------~i~~~~~~~~----~~~--~~~----~~~~~~~~~~~Pfavi~s 209 (276)
T cd01850 157 TPEE--LKE----FKQRIMEDIEEH-----------NIKIYKFPED----EED--DET----IEENKKLRSLIPFAVVGS 209 (276)
T ss_pred CHHH--HHH----HHHHHHHHHHHc-----------CCceECCCCC----ccc--HHH----HHHHHhhccCCCcEEEec
Confidence 3321 111 123344444322 3565533221 000 000 001244556788999988
Q ss_pred CCcceeccccccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhhhcccch-h-hhhhcc
Q 021699 248 SKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPV-W-ARASRR 308 (309)
Q Consensus 248 ~~~~~~~~~~~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~ 308 (309)
...+..++..+++|+ |+||...|...-++.|..+...+.+..-.|+++.-... . .||..+
T Consensus 210 ~~~~~~~g~~~~~R~-y~WG~~~v~n~~h~df~~Lr~~l~~~~~~~l~~~t~~~~Ye~yr~~~ 271 (276)
T cd01850 210 NEEVEVNGKKVRGRK-YPWGVVEVENEEHCDFVKLRNLLIRTHLQDLKETTHNVHYENYRTEK 271 (276)
T ss_pred CceeecCCcEEEEec-CCccEEeecCcccccHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 887777789999999 99999999999999999977889999999998764433 2 355544
No 12
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=4.1e-22 Score=192.44 Aligned_cols=206 Identities=18% Similarity=0.228 Sum_probs=143.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc--HHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN--YHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~--~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|+|++.+...+++.+++|.++....+.++|..+.+|||||+....... .+.+..++...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 4699999999999999999999999876788889999988887888899999999999986533221 23333333322
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
...++|++++|++++. +.+..+..++..+.+. + +|+|+|+||+|+.+++. .... ...+.+.+..
T Consensus 290 ~i~~ad~vilV~Da~~-~~s~~~~~~~~~~~~~-~----~piIiV~NK~Dl~~~~~--~~~~----~~~i~~~l~~---- 353 (472)
T PRK03003 290 AIEAAEVAVVLIDASE-PISEQDQRVLSMVIEA-G----RALVLAFNKWDLVDEDR--RYYL----EREIDRELAQ---- 353 (472)
T ss_pred HHhcCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-C----CCEEEEEECcccCChhH--HHHH----HHHHHHhccc----
Confidence 3368999999987654 4667777776666542 2 79999999999863211 1111 1122222211
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCcc-------eeccccccCCCCCCCCc
Q 021699 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKAL-------LVDKKLVEGPNPNEKGK 268 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~-------~~~~~~~~~~~p~~~g~ 268 (309)
....|++.+|+. ++.+ +.+|++.+........+.+ ++.+++..+++|...|+
T Consensus 354 ------~~~~~~~~~SAk----~g~g-----------v~~lf~~i~~~~~~~~~~i~t~~ln~~~~~~~~~~~~p~~~g~ 412 (472)
T PRK03003 354 ------VPWAPRVNISAK----TGRA-----------VDKLVPALETALESWDTRIPTGRLNAWLGELVAATPPPVRGGK 412 (472)
T ss_pred ------CCCCCEEEEECC----CCCC-----------HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCCCCe
Confidence 112688887763 4443 6677776666554433332 55667888899999999
Q ss_pred ccccHHHHHHHHH
Q 021699 269 ILIPFIFAFQYFF 281 (309)
Q Consensus 269 ~~~~l~~~~q~~~ 281 (309)
++ +++|++|+..
T Consensus 413 ~~-k~~y~~q~~~ 424 (472)
T PRK03003 413 QP-RILFATQAST 424 (472)
T ss_pred ee-eEEEEECCCC
Confidence 96 9999999864
No 13
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.88 E-value=1.3e-21 Score=160.32 Aligned_cols=144 Identities=20% Similarity=0.316 Sum_probs=103.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
++|+++|.+|+|||||+|+|+|.. ..++++|++|.+.....+.+++..+.++||||+++......+ ....++++...+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e-e~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE-ERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH-HHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH-HHHHHHHHhhcC
Confidence 589999999999999999999998 578999999999999999999999999999999775443321 133456666689
Q ss_pred CcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccc
Q 021699 120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKD 199 (309)
Q Consensus 120 ~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 199 (309)
+|++++| +|+..+ +.+..++..+.+. | .|+++|+||+|..+..+...+ .+.+.+.+.
T Consensus 79 ~D~ii~V--vDa~~l-~r~l~l~~ql~e~-g----~P~vvvlN~~D~a~~~g~~id------~~~Ls~~Lg--------- 135 (156)
T PF02421_consen 79 PDLIIVV--VDATNL-ERNLYLTLQLLEL-G----IPVVVVLNKMDEAERKGIEID------AEKLSERLG--------- 135 (156)
T ss_dssp SSEEEEE--EEGGGH-HHHHHHHHHHHHT-T----SSEEEEEETHHHHHHTTEEE-------HHHHHHHHT---------
T ss_pred CCEEEEE--CCCCCH-HHHHHHHHHHHHc-C----CCEEEEEeCHHHHHHcCCEEC------HHHHHHHhC---------
Confidence 9999999 454444 3445565666554 3 799999999998755544332 245555553
Q ss_pred cccCCCcEEEeccc
Q 021699 200 IQGSFVPVVLVENS 213 (309)
Q Consensus 200 ~~~~~ipv~~v~~~ 213 (309)
+|++++++.
T Consensus 136 -----~pvi~~sa~ 144 (156)
T PF02421_consen 136 -----VPVIPVSAR 144 (156)
T ss_dssp -----S-EEEEBTT
T ss_pred -----CCEEEEEeC
Confidence 799998874
No 14
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.88 E-value=5.3e-23 Score=185.01 Aligned_cols=235 Identities=13% Similarity=0.202 Sum_probs=140.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccC-CCC------CCC--eeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHH
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVST-FQS------EGP--RPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHA 107 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~-~~~------~t~--~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~ 107 (309)
.|+|+|+|.+|+|||||||+|++........ .+. .+. .........++. +++||||||+++.-.. ...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n-~~~ 82 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDN-SDC 82 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTH-CHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccc-hhh
Confidence 4999999999999999999999986544421 110 111 122223334454 6899999999874322 222
Q ss_pred HHHHHHh-------------------hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 108 IQLIKRF-------------------LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 108 ~~~i~~~-------------------~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+..+..+ ..+.++|||||+++++++++++.|.+.|+.|.+. .++|.|+.|+|...
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEESTGGGS-
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEecccccC
Confidence 2222111 1256899999999988888999999999999887 69999999999873
Q ss_pred CCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCC
Q 021699 169 PDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGS 248 (309)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~ 248 (309)
.++.. .....+++.++.. +|+++..... .....+ ..-...+...+++++.++.
T Consensus 157 -----~~el~-~~k~~i~~~l~~~-----------~I~~f~f~~~----~~~~~e------~~~~~~~~~~~PFavi~s~ 209 (281)
T PF00735_consen 157 -----PEELQ-AFKQRIREDLEEN-----------NIKIFDFPED----DDDDEE------IEENQKIRSMLPFAVIGSN 209 (281)
T ss_dssp -----HHHHH-HHHHHHHHHHHHT-----------T--S--------------HC------HHHHHHHHHC-SEEE---S
T ss_pred -----HHHHH-HHHHHHHHHHHHc-----------Cceeeccccc----cccccc------cccccccccceeeEEEecc
Confidence 33321 1123333333322 2444322110 000000 0114556667889999988
Q ss_pred Cccee-ccccccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhhhcccc-hh-hhhhcc
Q 021699 249 KALLV-DKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKP-VW-ARASRR 308 (309)
Q Consensus 249 ~~~~~-~~~~~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~ 308 (309)
..+.. +++.+++|. |+||...+...-++.|..+...+.+..-.|++..-.. +. .||.++
T Consensus 210 ~~~~~~~g~~~~gR~-YpWG~vev~n~~hsDF~~Lr~~Ll~~~l~dL~~~T~~~~YE~yR~~~ 271 (281)
T PF00735_consen 210 TEIENSNGKRVRGRK-YPWGTVEVENPEHSDFLKLRNLLLGTHLQDLKDSTENVHYENYRTEK 271 (281)
T ss_dssp SEEEE-SSSEEEEEE-ETTEEEETT-TTTSSHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHH
T ss_pred eeeeccCCcEEeeee-cCCccccccccccccHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 87777 788999999 9999999999999999997777788877788776543 22 455544
No 15
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=4.6e-22 Score=190.22 Aligned_cols=206 Identities=24% Similarity=0.369 Sum_probs=139.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~--~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|+|++.+...+++.+++|.++.......++..+.+|||||+.+.....+ +.+...+...
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 45899999999999999999999998777888889998888778888888999999999976554432 2222122111
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
....+|++++|++... +++..+..++..+.+. + +|+++|+||+|+.. +....+++ .+.+.+.+..
T Consensus 251 ~~~~ad~~ilV~D~~~-~~~~~~~~~~~~~~~~-~----~~iiiv~NK~Dl~~-~~~~~~~~----~~~~~~~~~~---- 315 (429)
T TIGR03594 251 AIERADVVLLVLDATE-GITEQDLRIAGLILEA-G----KALVIVVNKWDLVK-DEKTREEF----KKELRRKLPF---- 315 (429)
T ss_pred HHHhCCEEEEEEECCC-CccHHHHHHHHHHHHc-C----CcEEEEEECcccCC-CHHHHHHH----HHHHHHhccc----
Confidence 2368999999987753 5777787777766553 2 79999999999861 11111111 1222222221
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCc-------ceeccccccCCCCCCCCc
Q 021699 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKA-------LLVDKKLVEGPNPNEKGK 268 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~-------~~~~~~~~~~~~p~~~g~ 268 (309)
...+|++++|+. ++.+ +.++++.+........+. -++.++...+++|...|+
T Consensus 316 ------~~~~~vi~~SA~----~g~~-----------v~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~p~~~~~ 374 (429)
T TIGR03594 316 ------LDFAPIVFISAL----TGQG-----------VDKLLDAIDEVYENANRRISTSKLNRVLEEAVAAHPPPLVNGR 374 (429)
T ss_pred ------CCCCceEEEeCC----CCCC-----------HHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCCCCCCCc
Confidence 123789988874 4443 455555444433221111 145566777888888999
Q ss_pred ccccHHHHHHHH
Q 021699 269 ILIPFIFAFQYF 280 (309)
Q Consensus 269 ~~~~l~~~~q~~ 280 (309)
++ +++|++|..
T Consensus 375 ~~-k~~y~~q~~ 385 (429)
T TIGR03594 375 RL-KIKYATQVG 385 (429)
T ss_pred ee-eEEEEECCC
Confidence 96 999999984
No 16
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=4.7e-21 Score=183.56 Aligned_cols=205 Identities=23% Similarity=0.353 Sum_probs=140.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH--HHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH--AIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~--~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|+|++.+...+++.+++|.+........++..+.+|||||+.+.....+. .+...+..-
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 469999999999999999999999988788888999998887777788999999999999765544321 111111111
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
....+|++|+|+++.. .++..+..++..+.+. + +|+++|+||||+.++. ..++. .+.+...+..
T Consensus 252 ~~~~ad~~ilViD~~~-~~~~~~~~i~~~~~~~-~----~~~ivv~NK~Dl~~~~--~~~~~----~~~~~~~l~~---- 315 (435)
T PRK00093 252 AIERADVVLLVIDATE-GITEQDLRIAGLALEA-G----RALVIVVNKWDLVDEK--TMEEF----KKELRRRLPF---- 315 (435)
T ss_pred HHHHCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-C----CcEEEEEECccCCCHH--HHHHH----HHHHHHhccc----
Confidence 2368899999977654 4777788777666553 2 7999999999986221 11111 1223222221
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCc-------ceeccccccCCCCCCCCc
Q 021699 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKA-------LLVDKKLVEGPNPNEKGK 268 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~-------~~~~~~~~~~~~p~~~g~ 268 (309)
...+|++++|+. ++.+ +.+|++.+........+. -++.+++..+++|...|+
T Consensus 316 ------~~~~~i~~~SA~----~~~g-----------v~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~p~~~~~ 374 (435)
T PRK00093 316 ------LDYAPIVFISAL----TGQG-----------VDKLLEAIDEAYENANRRISTSVLNRVLEEAVERHPPPLVKGR 374 (435)
T ss_pred ------ccCCCEEEEeCC----CCCC-----------HHHHHHHHHHHHHHHcCcCChHHHHHHHHHHHHcCCCCCCCCe
Confidence 123799988874 3333 556666555443322111 145567778888888999
Q ss_pred ccccHHHHHHHH
Q 021699 269 ILIPFIFAFQYF 280 (309)
Q Consensus 269 ~~~~l~~~~q~~ 280 (309)
.+ +++|++|..
T Consensus 375 ~~-k~~~~~q~~ 385 (435)
T PRK00093 375 RL-KIKYATQVG 385 (435)
T ss_pred ee-eEEEEEcCC
Confidence 86 999999976
No 17
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.84 E-value=7.7e-20 Score=184.49 Aligned_cols=206 Identities=17% Similarity=0.192 Sum_probs=142.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc--HHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN--YHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~--~~~~~~i~~~~ 115 (309)
...+|+++|.+|+|||||+|+|++.+...+++.+++|.++......++|..+.+|||||+.+..... .+.+..++...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 3589999999999999999999999876778889999988887788899999999999986533222 23333333222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
....+|++++|++.+. +.+..+..++..+.+. + +|+++|+||+|+.+.+. . +.+.+.+... +
T Consensus 529 ~i~~advvilViDat~-~~s~~~~~i~~~~~~~-~----~piIiV~NK~DL~~~~~--~--------~~~~~~~~~~--l 590 (712)
T PRK09518 529 AIERSELALFLFDASQ-PISEQDLKVMSMAVDA-G----RALVLVFNKWDLMDEFR--R--------QRLERLWKTE--F 590 (712)
T ss_pred HhhcCCEEEEEEECCC-CCCHHHHHHHHHHHHc-C----CCEEEEEEchhcCChhH--H--------HHHHHHHHHh--c
Confidence 3368999999977653 4667777777666442 2 79999999999863211 1 1222222221 1
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCcc-------eeccccccCCCCCCCCc
Q 021699 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKAL-------LVDKKLVEGPNPNEKGK 268 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~-------~~~~~~~~~~~p~~~g~ 268 (309)
. .....|++++|+. ++.+ +.+|++.+.....+..+.+ ++.++...+++|...|+
T Consensus 591 ~----~~~~~~ii~iSAk----tg~g-----------v~~L~~~i~~~~~~~~~~i~T~~Ln~~l~~~~~~~~~p~~~g~ 651 (712)
T PRK09518 591 D----RVTWARRVNLSAK----TGWH-----------TNRLAPAMQEALESWDQRIPTGKLNAFLGKIQAEHPHPLRGGK 651 (712)
T ss_pred c----CCCCCCEEEEECC----CCCC-----------HHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhhCCCCccCCe
Confidence 0 0123688887763 4443 6777777776665432221 44556777888888899
Q ss_pred ccccHHHHHHHHH
Q 021699 269 ILIPFIFAFQYFF 281 (309)
Q Consensus 269 ~~~~l~~~~q~~~ 281 (309)
+. +++|++|..-
T Consensus 652 ~~-ki~y~~q~~~ 663 (712)
T PRK09518 652 QP-RILFATQAST 663 (712)
T ss_pred ee-eEEEEECCCC
Confidence 86 9999999864
No 18
>COG1159 Era GTPase [General function prediction only]
Probab=99.83 E-value=3.7e-19 Score=157.00 Aligned_cols=125 Identities=19% Similarity=0.252 Sum_probs=101.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH-HHHHhhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ-LIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~-~i~~~~~ 116 (309)
..--|+++|+||+|||||+|+|+|..++.+|+.+.+|+....+-...+...+.++||||+......-.+++. .+...
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s-- 82 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSA-- 82 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHH--
Confidence 346799999999999999999999999999999999999999888888899999999999876443333322 22222
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
...+|++|||++.+. .++..|..+++.+.+.. .|+++++||+|...++
T Consensus 83 l~dvDlilfvvd~~~-~~~~~d~~il~~lk~~~-----~pvil~iNKID~~~~~ 130 (298)
T COG1159 83 LKDVDLILFVVDADE-GWGPGDEFILEQLKKTK-----TPVILVVNKIDKVKPK 130 (298)
T ss_pred hccCcEEEEEEeccc-cCCccHHHHHHHHhhcC-----CCeEEEEEccccCCcH
Confidence 269999999977653 47788988998888721 6999999999987554
No 19
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=2.3e-20 Score=161.76 Aligned_cols=243 Identities=17% Similarity=0.231 Sum_probs=164.7
Q ss_pred hhccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccC---CCCCCCeeEEEEeeeC
Q 021699 9 REWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST---FQSEGPRPVMVSRSRA 85 (309)
Q Consensus 9 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~---~~~~t~~~~~~~~~~~ 85 (309)
..++||.+||++ +.++..+.+.. |+|+.||.+|.|||||+++|++........ .+.....+.++.....
T Consensus 20 ~GHvGFdsLPdQ-------LV~ksv~~GF~-FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEs 91 (406)
T KOG3859|consen 20 AGHVGFDSLPDQ-------LVNKSVSQGFC-FNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQES 91 (406)
T ss_pred cCccCcccChHH-------HHHHHHhcCce-EEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhc
Confidence 568999999999 56666777765 999999999999999999999876422111 1222233344444444
Q ss_pred Ce--EEEEEeCCCCCCCCCCcH-----------HHHHHH------HHhh---hcCCCcEEEEEEeCCccccChhHHHHHH
Q 021699 86 GF--TLNIVDTPGLIEGGYVNY-----------HAIQLI------KRFL---LNKTIDVLLYVDRLDVYRVDNLDKQITR 143 (309)
Q Consensus 86 g~--~l~liDTPG~~~~~~~~~-----------~~~~~i------~~~~---~~~~~d~il~v~~~d~~~~~~~d~~~l~ 143 (309)
+. +++|+||.|++|.-..++ +...++ ++.+ .+.++|+|||++.++++++...|.-.++
T Consensus 92 nvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk 171 (406)
T KOG3859|consen 92 NVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMK 171 (406)
T ss_pred CeeEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHH
Confidence 54 689999999997422221 111112 1211 3679999999999999999999999999
Q ss_pred HHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEE--ecccCcccCCcC
Q 021699 144 AITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVL--VENSGRCAKNEN 221 (309)
Q Consensus 144 ~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~--v~~~~~~~~~~~ 221 (309)
.+... .++|.|+.|+|.. +.++..+.....+.++..+. +.++- .+......+
T Consensus 172 ~Ldsk------VNIIPvIAKaDti-----sK~eL~~FK~kimsEL~sng------------v~IYqfPtDdetva~~--- 225 (406)
T KOG3859|consen 172 KLDSK------VNIIPVIAKADTI-----SKEELKRFKIKIMSELVSNG------------VQIYQFPTDDETVAKA--- 225 (406)
T ss_pred HHhhh------hhhHHHHHHhhhh-----hHHHHHHHHHHHHHHHHhcC------------ceeeeccchHHHHHHH---
Confidence 98876 6899999999975 23333332234444444433 22221 111100001
Q ss_pred CcccCCCCCCchHHHHHHHHHHHhcCCCcceeccccccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhhhc
Q 021699 222 DEKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKE 297 (309)
Q Consensus 222 ~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~~~ 297 (309)
-..+-..+++++.++...+.+.+++++.|. |+||...+..-.+|.|.-+.-.+.+.=-.|+.+.
T Consensus 226 -----------N~~mn~~lPFAVvGSte~vKvgnkmvraRq-yPwG~v~vENE~HCDFVKLREmLirtNmedlReq 289 (406)
T KOG3859|consen 226 -----------NSEMNHSLPFAVVGSTEEVKVGNKMVKARQ-YPWGTVQVENELHCDFVKLREMLIRTNMEDLREQ 289 (406)
T ss_pred -----------HHHhhcCCceeEecchHhhhhhhhhhhhcc-CCCCceeecchhhhHHHHHHHHHccccHHHHhhh
Confidence 122333577889999888889999999998 9999999999999999985555666555566654
No 20
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=4.8e-19 Score=164.32 Aligned_cols=120 Identities=19% Similarity=0.252 Sum_probs=98.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC--CCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG--YVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~--~~~~~~~~~i~~~~~~ 117 (309)
..|+++|+||||||||+|+|+|++.+.+++.+++|++......++.+.++.+|||+|+.+.+ ....+..+.... ..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~--Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALI--AI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHH--HH
Confidence 57999999999999999999999999999999999999999999999999999999996543 122222222222 23
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++|||++... .+++.|..+.+.|.+. + +|+++|+||+|..
T Consensus 82 ~eADvilfvVD~~~-Git~~D~~ia~~Lr~~-~----kpviLvvNK~D~~ 125 (444)
T COG1160 82 EEADVILFVVDGRE-GITPADEEIAKILRRS-K----KPVILVVNKIDNL 125 (444)
T ss_pred HhCCEEEEEEeCCC-CCCHHHHHHHHHHHhc-C----CCEEEEEEcccCc
Confidence 69999999955432 5899999999999843 2 7999999999974
No 21
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.80 E-value=1.1e-18 Score=136.90 Aligned_cols=114 Identities=25% Similarity=0.401 Sum_probs=88.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH--HHHHHHHhhhcC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH--AIQLIKRFLLNK 118 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~--~~~~i~~~~~~~ 118 (309)
+|+|+|.+|+|||||+|+|++.+...++..+++|..+......+++..+.++||||+.+....... ....+.+.+ .
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~--~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQI--S 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH--C
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHH--H
Confidence 689999999999999999999877788899999999877677889999999999999775443321 222222333 6
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEec
Q 021699 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 163 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk 163 (309)
.+|+++||++.+. ..++.+.++++.+. .+ +|+++|+||
T Consensus 79 ~~d~ii~vv~~~~-~~~~~~~~~~~~l~--~~----~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASN-PITEDDKNILRELK--NK----KPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTS-HSHHHHHHHHHHHH--TT----SEEEEEEES
T ss_pred HCCEEEEEEECCC-CCCHHHHHHHHHHh--cC----CCEEEEEcC
Confidence 8999999987654 34556777878784 22 799999998
No 22
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.80 E-value=7.2e-19 Score=163.60 Aligned_cols=125 Identities=23% Similarity=0.309 Sum_probs=98.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH-hh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKR-FL 115 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~-~~ 115 (309)
.+.++++++|+||||||||+|+|++++.+.|++.++||++.....+.++|.++.++||+|+.+++..-++. -+.+ .-
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~i--GIeRs~~ 292 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERI--GIERAKK 292 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHH--HHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999998765544321 1222 22
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
....+|++|||++... ..+..|..++..+.. .+|+++|+||+|+..+.
T Consensus 293 ~i~~ADlvL~v~D~~~-~~~~~d~~~~~~~~~------~~~~i~v~NK~DL~~~~ 340 (454)
T COG0486 293 AIEEADLVLFVLDASQ-PLDKEDLALIELLPK------KKPIIVVLNKADLVSKI 340 (454)
T ss_pred HHHhCCEEEEEEeCCC-CCchhhHHHHHhccc------CCCEEEEEechhccccc
Confidence 3369999999955442 256777777762222 17999999999997543
No 23
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.77 E-value=1.4e-17 Score=149.78 Aligned_cols=118 Identities=15% Similarity=0.227 Sum_probs=84.8
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHHhhhcCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH-AIQLIKRFLLNKT 119 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~-~~~~i~~~~~~~~ 119 (309)
+|+++|++|+|||||+|+|+|.....+++.+++|+.........++..+.++||||+.+......+ ..+.....+ ..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l--~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAI--GG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHH--hh
Confidence 689999999999999999999988788898999988766555566778999999999764222111 112222222 68
Q ss_pred CcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 120 ~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+|++++|++.+. ....+..+++.+... + .|+++|+||+|+.
T Consensus 80 aDvvl~VvD~~~--~~~~~~~i~~~l~~~-~----~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 80 VDLILFVVDSDQ--WNGDGEFVLTKLQNL-K----RPVVLTRNKLDNK 120 (270)
T ss_pred CCEEEEEEECCC--CCchHHHHHHHHHhc-C----CCEEEEEECeeCC
Confidence 999999977653 222234445555432 2 7999999999985
No 24
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.77 E-value=2.1e-17 Score=141.85 Aligned_cols=179 Identities=20% Similarity=0.222 Sum_probs=110.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCC----CCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ----SEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~----~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
+++|+++|.+|+|||||+|+|+|......+..+ .+|.....+.. .....+.+|||||+++.....+++++.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~--- 76 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEM--- 76 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHh---
Confidence 489999999999999999999996432211111 12222222111 1234799999999987655544443322
Q ss_pred hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCC-------CHHHHHHhhhHHHHH
Q 021699 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL-------DYEVFCSKRSEALLK 187 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~-------~~~~~~~~~~~~l~~ 187 (309)
...++|+++++ .+ .+++..|..+++.+.+. + +++++|+||+|+..++.. ..+++++...+.+.+
T Consensus 77 -~~~~~d~~l~v--~~-~~~~~~d~~~~~~l~~~-~----~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 147 (197)
T cd04104 77 -KFSEYDFFIII--SS-TRFSSNDVKLAKAIQCM-G----KKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLE 147 (197)
T ss_pred -CccCcCEEEEE--eC-CCCCHHHHHHHHHHHHh-C----CCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHH
Confidence 22578999998 33 36889999999988775 3 689999999998543221 123333333333333
Q ss_pred hhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCcc
Q 021699 188 FVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKAL 251 (309)
Q Consensus 188 ~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~ 251 (309)
.+... +....|++++|+... .+ .+ ++.|.+.+...+++..+..
T Consensus 148 ~~~~~--------~~~~p~v~~vS~~~~--~~---------~~--~~~l~~~~~~~l~~~~~~~ 190 (197)
T cd04104 148 NLQEA--------GVSEPPVFLVSNFDP--SD---------YD--FPKLRETLLKDLPAHKRHV 190 (197)
T ss_pred HHHHc--------CCCCCCEEEEeCCCh--hh---------cC--hHHHHHHHHHHhhHHHHHH
Confidence 33321 112257777776410 00 01 7889999998888775543
No 25
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=3.7e-17 Score=152.00 Aligned_cols=220 Identities=18% Similarity=0.188 Sum_probs=137.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
...++|+|+|+||+|||||+|+|..+++..+++.+++|++.....++++|+++.++||+|+.+.....-+.+..-+..-.
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999998722222222222222333
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHH---hC----ccccCcEEEEEecccCCCCC-CCCHHHHHHhhhHHHHHh
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDN---FG----EQIWKRALIVLTHAQLSLPD-RLDYEVFCSKRSEALLKF 188 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~---~g----~~~~~~~iiV~tk~D~~~~~-~~~~~~~~~~~~~~l~~~ 188 (309)
...+|+|++|+++.. ..+..|..+.+.+... +. +....+++++.||.|+.++- +...... .+
T Consensus 346 ~~~advi~~vvda~~-~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~---------~~ 415 (531)
T KOG1191|consen 346 IERADVILLVVDAEE-SDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPV---------VY 415 (531)
T ss_pred HhhcCEEEEEecccc-cccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCce---------ec
Confidence 468999999976643 3445555555444432 11 11226789999999986441 1111000 00
Q ss_pred hcccccccccccccCCCcEEE-ecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCcceeccccccC-CCCCCC
Q 021699 189 VSPSTWMKKKDIQGSFVPVVL-VENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEG-PNPNEK 266 (309)
Q Consensus 189 i~~~~~~~~~~~~~~~ipv~~-v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~~~~~~~~~~-~~p~~~ 266 (309)
.... .-...|++. +++ .+ +.|+.+|.+.+...+... ....+ .+|..-
T Consensus 416 ~~~~--------~~~~~~i~~~vs~----~t-----------keg~~~L~~all~~~~~~--------~~~~~s~~~t~~ 464 (531)
T KOG1191|consen 416 PSAE--------GRSVFPIVVEVSC----TT-----------KEGCERLSTALLNIVERL--------VVSPHSAPPTLS 464 (531)
T ss_pred cccc--------cCcccceEEEeee----ch-----------hhhHHHHHHHHHHHHHHh--------hcCCCCCchhhc
Confidence 1100 001134433 332 22 347888888777666443 22122 333444
Q ss_pred CcccccHHHHHHHH--HHhhhhHHHHhHhhhhcc
Q 021699 267 GKILIPFIFAFQYF--FIIKPLIRAIKSDAAKEA 298 (309)
Q Consensus 267 g~~~~~l~~~~q~~--~~~~~~~~~~~~~~~~~~ 298 (309)
++++ .-+|.++.+ +..+.+-...+.|+.=..
T Consensus 465 ~~r~-~~~~r~~~~~~l~~~~~~k~~~~D~~la~ 497 (531)
T KOG1191|consen 465 QKRI-KELLRTCAAPELERRFLAKQLKEDIDLAG 497 (531)
T ss_pred chhH-HHHHHhhhhhhHHHHHHhhhcccchhhcc
Confidence 4554 777777777 555555555555655444
No 26
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=9.2e-17 Score=133.28 Aligned_cols=125 Identities=26% Similarity=0.375 Sum_probs=87.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~--~~~~~i~~~~~ 116 (309)
+++|+++|.+|+|||||+|+|++......++.++++..........++..+.+|||||+.+...... +.+........
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 6899999999999999999999987656667777777776666777888999999999976432111 11111111112
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
...+|++++|++.+. ..+..+..++..+... + .|+++|+||+|+.+.
T Consensus 82 ~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~-~----~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 82 IERADVVLLVIDATE-GITEQDLRIAGLILEE-G----KALVIVVNKWDLVEK 128 (174)
T ss_pred HhhcCeEEEEEeCCC-CcchhHHHHHHHHHhc-C----CCEEEEEeccccCCc
Confidence 258899999977643 3344444554444332 2 699999999998644
No 27
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.76 E-value=6e-19 Score=162.62 Aligned_cols=241 Identities=20% Similarity=0.202 Sum_probs=131.3
Q ss_pred HHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCC-----cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCC
Q 021699 24 KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEK-----AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI 98 (309)
Q Consensus 24 ~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~-----~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~ 98 (309)
.+.+.++.+.. .+++|+|+|.+|+|||||||+|.|-. .+.++.. .+|..+..+... .-.++++||.||.+
T Consensus 23 ~i~~~l~~~~~---~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~-etT~~~~~Y~~p-~~pnv~lWDlPG~g 97 (376)
T PF05049_consen 23 KIREALKDIDN---APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVV-ETTMEPTPYPHP-KFPNVTLWDLPGIG 97 (376)
T ss_dssp HHHHHHHHHHH-----EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSH-SCCTS-EEEE-S-S-TTEEEEEE--GG
T ss_pred HHHHHHHHhhc---CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCC-cCCCCCeeCCCC-CCCCCeEEeCCCCC
Confidence 34444444444 78999999999999999999998732 1222222 345555555432 22369999999998
Q ss_pred CCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC-------CCCCC
Q 021699 99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL-------SLPDR 171 (309)
Q Consensus 99 ~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~-------~~~~~ 171 (309)
......+++++.+. -...|++|++ . ..+++..|..+.+.+.+. | +++++|-||+|. ..|..
T Consensus 98 t~~f~~~~Yl~~~~----~~~yD~fiii--~-s~rf~~ndv~La~~i~~~-g----K~fyfVRTKvD~Dl~~~~~~~p~~ 165 (376)
T PF05049_consen 98 TPNFPPEEYLKEVK----FYRYDFFIII--S-SERFTENDVQLAKEIQRM-G----KKFYFVRTKVDSDLYNERRRKPRT 165 (376)
T ss_dssp GSS--HHHHHHHTT----GGG-SEEEEE--E-SSS--HHHHHHHHHHHHT-T-----EEEEEE--HHHHHHHHHCC-STT
T ss_pred CCCCCHHHHHHHcc----ccccCEEEEE--e-CCCCchhhHHHHHHHHHc-C----CcEEEEEecccccHhhhhccCCcc
Confidence 87777777776542 2478988888 3 348999999999999877 4 799999999975 12223
Q ss_pred CCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCcc
Q 021699 172 LDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKAL 251 (309)
Q Consensus 172 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~ 251 (309)
.+.++.+++..+...+.+++. +....+|+++++.. +...+ ++.|.+++..-++...++.
T Consensus 166 f~~e~~L~~IR~~c~~~L~k~--------gv~~P~VFLVS~~d-----------l~~yD--Fp~L~~tL~~dLp~~Kr~~ 224 (376)
T PF05049_consen 166 FNEEKLLQEIRENCLENLQKA--------GVSEPQVFLVSSFD-----------LSKYD--FPKLEETLEKDLPAHKRHA 224 (376)
T ss_dssp --HHTHHHHHHHHHHHHHHCT--------T-SS--EEEB-TTT-----------TTSTT--HHHHHHHHHHHS-GGGHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHc--------CCCcCceEEEeCCC-----------cccCC--hHHHHHHHHHHhHHHHHHH
Confidence 333344433333333333322 22336788887741 11222 7888888888887776654
Q ss_pred eec-------cccccCCCCCCCCcccccHHHHHHHH-HHhhhhHHHH-hHhhhhcccchhhhhh
Q 021699 252 LVD-------KKLVEGPNPNEKGKILIPFIFAFQYF-FIIKPLIRAI-KSDAAKEAKPVWARAS 306 (309)
Q Consensus 252 ~~~-------~~~~~~~~p~~~g~~~~~l~~~~q~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~ 306 (309)
.+. ..+.+.+. .-+.++|. .+.+.+ .-.-|+.+.+ ..|+....+.+..||.
T Consensus 225 fllsLp~is~~~I~kKk~-~lk~~Iw~---~Al~s~~~a~iP~~g~~~~~D~~~L~~~l~~Yr~ 284 (376)
T PF05049_consen 225 FLLSLPNISEAAIEKKKE-SLKQKIWL---EALKSAAVATIPVPGLSSACDLEILEKCLNQYRS 284 (376)
T ss_dssp HHHHS---SHHHHHHHHH-HHHHHHHH---HHHHT--BSS-CCCSS--HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHhhHHHHHHHHH-HHHHHHHH---HHHHHHHhccCCCcccccccCHHHHHHHHHHHHH
Confidence 221 22222222 23333331 222222 2234777775 6788888888888885
No 28
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.75 E-value=5.8e-17 Score=134.86 Aligned_cols=126 Identities=21% Similarity=0.175 Sum_probs=82.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
+|+++|.+|+|||||+|+|.+.+. .++..+++|..+......+.+. .+.+|||||+.+.............+.+ ..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~--~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHI--ER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHH--Hh
Confidence 689999999999999999998764 5566666677766666666776 9999999998643222111111111111 47
Q ss_pred CcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 120 IDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 120 ~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
+|++++|+++... ........+.+.+.+.......+|+++|+||+|+.++
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 129 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE 129 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc
Confidence 8999999776532 1112223455556554322123789999999998643
No 29
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.75 E-value=2.2e-17 Score=147.09 Aligned_cols=134 Identities=21% Similarity=0.266 Sum_probs=105.4
Q ss_pred HHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc
Q 021699 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 104 (309)
Q Consensus 25 l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~ 104 (309)
..+.++++...+.+-.+|+|.|.||||||||++++++.+. .+.++|.||+......++.++.++++|||||+.|.....
T Consensus 154 ~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~E 232 (346)
T COG1084 154 ARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEE 232 (346)
T ss_pred HHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHH
Confidence 3445566666777789999999999999999999999986 788999999999999999999999999999999865432
Q ss_pred H-----HHHHHHHHhhhcCCCcEEEEEEeCCccc-cC-hhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 105 Y-----HAIQLIKRFLLNKTIDVLLYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 105 ~-----~~~~~i~~~~~~~~~d~il~v~~~d~~~-~~-~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
. ++.-.++ .=.++|||++++..+. ++ +....+++.+...|. .|+++|+||+|...
T Consensus 233 rN~IE~qAi~AL~-----hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~ 294 (346)
T COG1084 233 RNEIERQAILALR-----HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIAD 294 (346)
T ss_pred hcHHHHHHHHHHH-----HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccc
Confidence 2 2222222 3458899997776543 44 344568888988886 58999999999863
No 30
>PRK15494 era GTPase Era; Provisional
Probab=99.75 E-value=1.1e-16 Score=148.34 Aligned_cols=122 Identities=18% Similarity=0.240 Sum_probs=89.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHhhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~-~~~~~~~~i~~~~~ 116 (309)
..++|+++|.+|+|||||+|+|+|.....+++.+++|+.........++..+.+|||||+.+... ......+.....
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~-- 128 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS-- 128 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH--
Confidence 45799999999999999999999998777778888888777767778888999999999965322 222222222122
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
...+|++|+|++... .++..+..+++.+... + .|.++|+||+|+.
T Consensus 129 l~~aDvil~VvD~~~-s~~~~~~~il~~l~~~-~----~p~IlViNKiDl~ 173 (339)
T PRK15494 129 LHSADLVLLIIDSLK-SFDDITHNILDKLRSL-N----IVPIFLLNKIDIE 173 (339)
T ss_pred hhhCCEEEEEEECCC-CCCHHHHHHHHHHHhc-C----CCEEEEEEhhcCc
Confidence 268999999966432 4666666677666543 2 5778999999985
No 31
>PRK00089 era GTPase Era; Reviewed
Probab=99.74 E-value=2.8e-16 Score=142.86 Aligned_cols=121 Identities=21% Similarity=0.266 Sum_probs=89.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH-HHHHHHhhhc
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA-IQLIKRFLLN 117 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~-~~~i~~~~~~ 117 (309)
.-.|+|+|.+|+|||||+|+|+|.+.+.+++.+.+|+.........++..+.++||||+.+......+. ....... .
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~--~ 82 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS--L 82 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHH--H
Confidence 467999999999999999999999988888888888776655555566799999999997644222221 1122222 2
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++.+. .++..+..+++.+... ..|+++|+||+|+.
T Consensus 83 ~~~D~il~vvd~~~-~~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~ 126 (292)
T PRK00089 83 KDVDLVLFVVDADE-KIGPGDEFILEKLKKV-----KTPVILVLNKIDLV 126 (292)
T ss_pred hcCCEEEEEEeCCC-CCChhHHHHHHHHhhc-----CCCEEEEEECCcCC
Confidence 68999999977654 4666676676666532 26999999999986
No 32
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.73 E-value=2.8e-16 Score=145.96 Aligned_cols=124 Identities=19% Similarity=0.173 Sum_probs=84.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh-
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL- 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~- 115 (309)
..++|+++|.+|+|||||+|+|++.+ +.+.+.+++|.++......+ +|.++.||||||+...- .....+.++..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l--~~~lie~f~~tle 264 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL--PHELVAAFRATLE 264 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccC--CHHHHHHHHHHHH
Confidence 34899999999999999999999987 46677778888888777777 57899999999994321 111222222211
Q ss_pred hcCCCcEEEEEEeCCccccChhHH-HHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDK-QITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~-~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
....+|++++|++.+.. ....+. .+...+.+. +. ..+|+++|+||+|+.
T Consensus 265 ~~~~ADlil~VvD~s~~-~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 265 EVREADLLLHVVDASDP-DREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLL 314 (351)
T ss_pred HHHhCCEEEEEEECCCC-chHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCC
Confidence 12589999999776432 122222 233334332 31 126999999999985
No 33
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.73 E-value=2.6e-16 Score=130.80 Aligned_cols=122 Identities=22% Similarity=0.257 Sum_probs=80.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHH--HHHHHhhhcC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAI--QLIKRFLLNK 118 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~--~~i~~~~~~~ 118 (309)
+|+++|.+|+|||||+|+|++... .++..+.+|..........++.++.||||||+.+........+ ..+. .+ ..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~-~~-~~ 78 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAIT-AL-AH 78 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHH-HH-Hh
Confidence 799999999999999999999864 3444555566665555566778999999999965332211111 1111 11 12
Q ss_pred CCcEEEEEEeCCccc-cC-hhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 119 TIDVLLYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 119 ~~d~il~v~~~d~~~-~~-~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..|++|+|++..... ++ .....+++.+.+.+. ..|+++|+||+|+..
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~ 127 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLT 127 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCc
Confidence 468999997765321 22 223456666665542 279999999999863
No 34
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.73 E-value=5.5e-16 Score=126.66 Aligned_cols=120 Identities=23% Similarity=0.311 Sum_probs=85.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH-HHHHHHHHhhhcC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY-HAIQLIKRFLLNK 118 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~-~~~~~i~~~~~~~ 118 (309)
++|+++|.+|+|||||+|++++.....+++.++++...........+.++.+|||||+.+.....+ ........+. .
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~--~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAI--E 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHH--h
Confidence 689999999999999999999987666677777777776666777888999999999976543211 1111112222 5
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
++|++++|++++. ..+..+...+.. .. ..|+++|+||+|+.+.
T Consensus 80 ~~~~~v~v~d~~~-~~~~~~~~~~~~---~~----~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 80 EADLVLFVIDASR-GLDEEDLEILEL---PA----DKPIIVVLNKSDLLPD 122 (157)
T ss_pred hCCEEEEEEECCC-CCCHHHHHHHHh---hc----CCCEEEEEEchhcCCc
Confidence 8999999977763 233444444332 22 2799999999998643
No 35
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=4.6e-16 Score=146.20 Aligned_cols=124 Identities=17% Similarity=0.150 Sum_probs=87.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
.|+++|.+|||||||+|+|++... .+++.+.+|+.+......+.+ ..+.|+||||+.+........-..+.+. ..+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~--i~r 237 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKH--LER 237 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHH--HHh
Confidence 699999999999999999999875 788999999999988887764 5799999999976443221111111122 268
Q ss_pred CcEEEEEEeCCc---cccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 120 IDVLLYVDRLDV---YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 120 ~d~il~v~~~d~---~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+|++++|+++.. .........+++.+......-..+|.++|+||+|+.
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 999999976541 112233345666665542222237999999999985
No 36
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.72 E-value=9.1e-16 Score=126.10 Aligned_cols=122 Identities=20% Similarity=0.243 Sum_probs=85.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH-HHHHhhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ-LIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~-~i~~~~~ 116 (309)
..++|+++|.+|+|||||+|+++|.+.......+.++...........+..+.+|||||+.+........+. .... .
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~--~ 79 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWS--A 79 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHH--H
Confidence 358999999999999999999999886666665555555555445556678999999999765433322211 1111 1
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
...+|++++|++.... .+..+..+.+.+... + .|+++|+||+|+.
T Consensus 80 ~~~~d~i~~v~d~~~~-~~~~~~~~~~~~~~~-~----~~~iiv~nK~Dl~ 124 (168)
T cd04163 80 LKDVDLVLFVVDASEP-IGEGDEFILELLKKS-K----TPVILVLNKIDLV 124 (168)
T ss_pred HHhCCEEEEEEECCCc-cCchHHHHHHHHHHh-C----CCEEEEEEchhcc
Confidence 2689999999776532 455566666666543 1 6899999999985
No 37
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.72 E-value=5.4e-16 Score=130.91 Aligned_cols=121 Identities=21% Similarity=0.261 Sum_probs=84.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHH
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKR 113 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~---~~~~~~i~~ 113 (309)
..++|+++|.+|+|||||+|+|++.. ...+++.+++|..+..+.. + ..+.+|||||++...... ..+...+..
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 93 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEE 93 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHHH
Confidence 56999999999999999999999975 4455666666665544433 2 379999999987543221 122233334
Q ss_pred hhhc-CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 114 FLLN-KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 114 ~~~~-~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++.. ..+|++++|++.+. +++..+..+++.+... + +|+++|+||+|+.
T Consensus 94 ~l~~~~~~~~ii~vvd~~~-~~~~~~~~~~~~~~~~-~----~pviiv~nK~D~~ 142 (179)
T TIGR03598 94 YLEKRENLKGVVLLMDIRH-PLKELDLEMLEWLRER-G----IPVLIVLTKADKL 142 (179)
T ss_pred HHHhChhhcEEEEEecCCC-CCCHHHHHHHHHHHHc-C----CCEEEEEECcccC
Confidence 4432 36789999976643 4777777776666442 2 7999999999985
No 38
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=5.4e-16 Score=142.99 Aligned_cols=125 Identities=18% Similarity=0.191 Sum_probs=86.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
.|+++|.+|||||||+|+|++... .+++++.+|..+......+ ++.++.++||||+.+........-..+.+++ .+
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi--e~ 236 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI--ER 236 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh--hh
Confidence 589999999999999999998764 5788889999998888777 5678999999999765433221111111122 58
Q ss_pred CcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 120 ~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+|++++|++++.....+....+.+.+.........+|+++|+||+|+.+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 8999999776532211222345555554322112379999999999853
No 39
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.71 E-value=6.1e-16 Score=148.02 Aligned_cols=121 Identities=19% Similarity=0.252 Sum_probs=93.8
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHhhhcCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLLNKT 119 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~-~~~~~~~i~~~~~~~~ 119 (309)
+|+++|++|||||||+|+|++...+.+++.+++|++.......+++..+.||||||+...... .+...+....++ ..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~--~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAI--EE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHH--hh
Confidence 589999999999999999999987778889999998888888899999999999998543211 122222222222 68
Q ss_pred CcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 120 ~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
+|++++|++... +++..+..+.+.+.+. + +|+++|+||+|+...
T Consensus 79 ad~vl~vvD~~~-~~~~~d~~i~~~l~~~-~----~piilVvNK~D~~~~ 122 (429)
T TIGR03594 79 ADVILFVVDGRE-GLTPEDEEIAKWLRKS-G----KPVILVANKIDGKKE 122 (429)
T ss_pred CCEEEEEEeCCC-CCCHHHHHHHHHHHHh-C----CCEEEEEECccCCcc
Confidence 999999976643 4778888888887763 2 799999999998643
No 40
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.71 E-value=7.9e-16 Score=147.57 Aligned_cols=121 Identities=24% Similarity=0.288 Sum_probs=87.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHh-hh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF-LL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~-~~ 116 (309)
+.++|+++|.+|+|||||+|+|++.+.+.+++.+++|.+.......++|.++.+|||||+.+....-+.. .+++. ..
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~--gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKI--GIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHH--HHHHHHHH
Confidence 4699999999999999999999998877788889999988888888899999999999996532211110 01111 12
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
...+|++++|++.+. ..+..+..++.. . ...|+++|+||+|+.+
T Consensus 292 ~~~aD~il~VvD~s~-~~s~~~~~~l~~-----~--~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 292 IEEADLVLLVLDASE-PLTEEDDEILEE-----L--KDKPVIVVLNKADLTG 335 (449)
T ss_pred HHhCCEEEEEecCCC-CCChhHHHHHHh-----c--CCCCcEEEEEhhhccc
Confidence 268999999977643 233334433322 1 1279999999999863
No 41
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.70 E-value=6.4e-16 Score=142.33 Aligned_cols=125 Identities=18% Similarity=0.188 Sum_probs=85.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
-.|+++|.+|+|||||+|+|++... .+++++.+|..+......+.+ ..+.|+||||+.+........-..+.+.+ .
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~-~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi--e 234 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI--E 234 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc-cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHH--H
Confidence 3689999999999999999998764 577888889888888877776 89999999999764432211111111122 5
Q ss_pred CCcEEEEEEeCCccc---cChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 119 TIDVLLYVDRLDVYR---VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 119 ~~d~il~v~~~d~~~---~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++|++++|++++... ..+....+.+++.........+|+++|+||+|+.
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~ 286 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLL 286 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCC
Confidence 889999997765421 1112233444454432222247999999999985
No 42
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=2.2e-15 Score=126.40 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=91.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHH
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKR 113 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~---~~~~~~i~~ 113 (309)
...-|+++|++|||||||||+|+|.. .+.+|..||.|+..-.+.. ++ .+.+||.||++-..... ++.-..+.+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~--~~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV--DD-ELRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe--cC-cEEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 45789999999999999999999965 5789999999887655443 33 38899999997543222 234445566
Q ss_pred hhhc-CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021699 114 FLLN-KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 114 ~~~~-~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
|+.. ....+++++++.. +.+...|.++++++.+.- .|+++|+||+|..+..
T Consensus 100 YL~~R~~L~~vvlliD~r-~~~~~~D~em~~~l~~~~-----i~~~vv~tK~DKi~~~ 151 (200)
T COG0218 100 YLEKRANLKGVVLLIDAR-HPPKDLDREMIEFLLELG-----IPVIVVLTKADKLKKS 151 (200)
T ss_pred HHhhchhheEEEEEEECC-CCCcHHHHHHHHHHHHcC-----CCeEEEEEccccCChh
Confidence 6643 2466666664432 247788999999988763 7999999999987443
No 43
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.69 E-value=5.8e-16 Score=149.97 Aligned_cols=164 Identities=20% Similarity=0.329 Sum_probs=120.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHhhhc
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLLN 117 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~-~~~~~~~i~~~~~~ 117 (309)
..+|+++|.||+||||++|+|+|.+. .+++.++.|.+-.+......|..+.++|+||.++-... .++ ...++++.+
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE--~Var~~ll~ 79 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDE--KVARDFLLE 79 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchH--HHHHHHHhc
Confidence 46799999999999999999999986 89999999999999999999999999999999875432 223 335778888
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccc
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKK 197 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 197 (309)
.++|+++-| +|+..+ ++++.-.++ ... ...|+++++|.+|..+..+...+. +.+.+.+.
T Consensus 80 ~~~D~ivnV--vDAtnL---eRnLyltlQ-LlE--~g~p~ilaLNm~D~A~~~Gi~ID~------~~L~~~LG------- 138 (653)
T COG0370 80 GKPDLIVNV--VDATNL---ERNLYLTLQ-LLE--LGIPMILALNMIDEAKKRGIRIDI------EKLSKLLG------- 138 (653)
T ss_pred CCCCEEEEE--cccchH---HHHHHHHHH-HHH--cCCCeEEEeccHhhHHhcCCcccH------HHHHHHhC-------
Confidence 899999999 665433 443322222 111 127999999999997666655442 45555554
Q ss_pred cccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCC
Q 021699 198 KDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGS 248 (309)
Q Consensus 198 ~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~ 248 (309)
+|+++.++. ++.+ +++|.+.+.....++.
T Consensus 139 -------vPVv~tvA~----~g~G-----------~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 139 -------VPVVPTVAK----RGEG-----------LEELKRAIIELAESKT 167 (653)
T ss_pred -------CCEEEEEee----cCCC-----------HHHHHHHHHHhccccc
Confidence 899988763 3332 5677777776665553
No 44
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.69 E-value=1.9e-15 Score=123.92 Aligned_cols=116 Identities=17% Similarity=0.220 Sum_probs=80.9
Q ss_pred EEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEE
Q 021699 44 VMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 123 (309)
Q Consensus 44 vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~i 123 (309)
++|.+|+|||||+|++++.. +.++..+++|.......+.+++..+.+|||||+.+......+. .....++...++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~-~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDE-KVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhH-HHHHHHhcCCCCcEE
Confidence 58999999999999999986 4666777788877777777888899999999997654332110 112233333689999
Q ss_pred EEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 124 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 124 l~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
++|++... . .....++..+.+. .+|+++|+||+|+.+.
T Consensus 79 i~v~d~~~--~-~~~~~~~~~~~~~-----~~~~iiv~NK~Dl~~~ 116 (158)
T cd01879 79 VNVVDATN--L-ERNLYLTLQLLEL-----GLPVVVALNMIDEAEK 116 (158)
T ss_pred EEEeeCCc--c-hhHHHHHHHHHHc-----CCCEEEEEehhhhccc
Confidence 99966543 2 2233444444332 2799999999998643
No 45
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.69 E-value=2.5e-16 Score=128.86 Aligned_cols=118 Identities=17% Similarity=0.253 Sum_probs=83.9
Q ss_pred EEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHhhhcCCCc
Q 021699 43 LVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFLLNKTID 121 (309)
Q Consensus 43 ~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~-~~~~~~~~i~~~~~~~~~d 121 (309)
+++|.+|+|||||+|+|++......+..+++|...........+..+.+|||||+.+... ...........++ .++|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~--~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAI--EEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHH--HhCC
Confidence 479999999999999999987656667777777766667777888999999999976433 1111111222222 5799
Q ss_pred EEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 122 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 122 ~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
++++|++... ..+..+..+.+.+.+. + .|+++|+||+|+.+
T Consensus 79 ~ii~v~d~~~-~~~~~~~~~~~~~~~~-~----~piiiv~nK~D~~~ 119 (157)
T cd01894 79 VILFVVDGRE-GLTPADEEIAKYLRKS-K----KPVILVVNKVDNIK 119 (157)
T ss_pred EEEEEEeccc-cCCccHHHHHHHHHhc-C----CCEEEEEECcccCC
Confidence 9999976643 3445555666666543 2 79999999999863
No 46
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.69 E-value=6.9e-16 Score=147.32 Aligned_cols=121 Identities=21% Similarity=0.267 Sum_probs=88.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH-HHHHHHhhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA-IQLIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~-~~~i~~~~~ 116 (309)
+.++|+++|.+|+|||||+|+|++.+...+++.+++|++.......++|.++.+|||||+.+....-+.. ......+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~-- 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA-- 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH--
Confidence 5699999999999999999999998877788899999888888888899999999999996543222211 1111122
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
...+|++++|++.+. ..+..+. ++..+.. . .+|+++|+||+|+.
T Consensus 280 ~~~aD~il~V~D~s~-~~s~~~~-~l~~~~~---~--~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 280 IKQADLVIYVLDASQ-PLTKDDF-LIIDLNK---S--KKPFILVLNKIDLK 323 (442)
T ss_pred HhhCCEEEEEEECCC-CCChhHH-HHHHHhh---C--CCCEEEEEECccCC
Confidence 268999999977653 2333333 4444322 1 26999999999985
No 47
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.69 E-value=5.2e-15 Score=127.06 Aligned_cols=175 Identities=15% Similarity=0.090 Sum_probs=100.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCC-CcHHHHHHHHHhhh
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGY-VNYHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~-~~~~~~~~i~~~~~ 116 (309)
+||+|+|.+|||||||+|++++.+... ...+..+.........++| ..+.||||||..+... ..++..... ...
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~-~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~--~~~ 77 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPE-EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPR--FRG 77 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCc-ccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHH--Hhh
Confidence 589999999999999999999876422 2223333233333445566 4678999999865322 222222211 112
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhC-ccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG-EQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g-~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
...+|++++|++++...--+....+.+.+.+... .....|+++|+||+|+......+.+ .+.++..+.
T Consensus 78 ~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~--------~~~~~~~~~--- 146 (198)
T cd04142 78 LRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRH--------VLSVLVRKS--- 146 (198)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHH--------HHHHHHHHh---
Confidence 2689999999887542111122344555554431 1122699999999999543222221 122221111
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCc
Q 021699 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKA 250 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~ 250 (309)
..+|++.+|+. ++.+ +.+|++.+...+..+++.
T Consensus 147 -------~~~~~~e~Sak----~g~~-----------v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 147 -------WKCGYLECSAK----YNWH-----------ILLLFKELLISATTRGRS 179 (198)
T ss_pred -------cCCcEEEecCC----CCCC-----------HHHHHHHHHHHhhccCCC
Confidence 12577777764 3433 788888888776655443
No 48
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.69 E-value=2.6e-15 Score=123.92 Aligned_cols=119 Identities=18% Similarity=0.152 Sum_probs=75.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+++|+++|.+|+|||||+|++.+... .....+++..........++. .+.||||||..+..... ..++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~- 70 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMR-------DLYI- 70 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHH-------HHHh-
Confidence 37999999999999999999997753 222333333333334445554 57889999985432211 1122
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
.++|++++|++++..........+++.+.+.... ...|+++|+||+|+.+.
T Consensus 71 -~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~ 121 (163)
T cd04136 71 -KNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLEDE 121 (163)
T ss_pred -hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence 5889999998876422112233455556554321 23699999999998643
No 49
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.68 E-value=2.5e-15 Score=124.32 Aligned_cols=120 Identities=17% Similarity=0.167 Sum_probs=76.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++++.... ....+..+.+........++ ..+.+|||||.... ......+.
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~-- 70 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFV-SKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY-------LEVRNEFY-- 70 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCeEEEEEEEECCccHHH-------HHHHHHHh--
Confidence 58999999999999999999988642 22222222222222333333 47889999998321 11122222
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCc---cccCcEEEEEecccCCCC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE---QIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~---~~~~~~iiV~tk~D~~~~ 169 (309)
.++|++++|++++....-.....++..+.+..+. ....|+++|+||+|+.++
T Consensus 71 ~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 125 (168)
T cd04119 71 KDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKH 125 (168)
T ss_pred ccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccc
Confidence 6899999998876422112234566666665442 123789999999998643
No 50
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=1.9e-15 Score=146.07 Aligned_cols=122 Identities=20% Similarity=0.285 Sum_probs=92.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHhhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~-~~~~~~~~i~~~~~ 116 (309)
...+|+|+|.+|||||||+|+|++...+.+++.+++|.+.......+++..+.||||||+..... ..+.+......++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~- 115 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM- 115 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH-
Confidence 44799999999999999999999988777788888888888877888899999999999853211 1112222222222
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++|+|++.+. +.+..+..+...+.+. .+|+++|+||+|+.
T Consensus 116 -~~aD~il~VvD~~~-~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~ 159 (472)
T PRK03003 116 -RTADAVLFVVDATV-GATATDEAVARVLRRS-----GKPVILAANKVDDE 159 (472)
T ss_pred -HhCCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECccCC
Confidence 58999999987754 3556677777777642 27999999999985
No 51
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.68 E-value=2.7e-15 Score=129.14 Aligned_cols=126 Identities=17% Similarity=0.140 Sum_probs=79.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHhh-
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFL- 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-~l~liDTPG~~~~~~~~~~~~~~i~~~~- 115 (309)
..++|+|+|.+|+|||||+|++++... .+...+.+|..+......+.+. .+.+|||||+.+... ....+.+...+
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~~ 116 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADV-YAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRSTLE 116 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchh-ccCCccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHHHH
Confidence 348999999999999999999999864 3333344455555555555554 899999999864321 12212121111
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
....+|++++|++.+..........+.+.+......+ .|+++|+||+|+.+
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~--~~viiV~NK~Dl~~ 167 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAED--IPMILVLNKIDLLD 167 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCC--CCEEEEEEccccCC
Confidence 1257899999977653222122223444444432222 69999999999863
No 52
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.68 E-value=8.5e-15 Score=120.66 Aligned_cols=119 Identities=18% Similarity=0.175 Sum_probs=80.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
.||+++|.+|+|||||+|++++.+. .....+..+.+.......+++. .+.+|||||... ....+..++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~-------~~~~~~~~~-- 70 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTF-DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQER-------FRSLIPSYI-- 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHh--
Confidence 4899999999999999999999875 3334445555555555556664 689999999632 112222333
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
..+|++++|++++.. ++... ..++..+....+. ..|+++|+||+|+.....
T Consensus 71 ~~~~~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~--~~~iilv~nK~D~~~~~~ 122 (161)
T cd01861 71 RDSSVAVVVYDITNRQSFDNT-DKWIDDVRDERGN--DVIIVLVGNKTDLSDKRQ 122 (161)
T ss_pred ccCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCC--CCEEEEEEEChhccccCc
Confidence 688999999888642 23332 3456555554443 269999999999854433
No 53
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=4.1e-15 Score=140.67 Aligned_cols=122 Identities=18% Similarity=0.217 Sum_probs=86.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHhh-hcC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-LNK 118 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~l~liDTPG~~~~~~~~~~~~~~i~~~~-~~~ 118 (309)
.|+++|.+|||||||+|+|++.+. .+++++.+|..+......+. +..+.++||||+.+........ ...++ ...
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gL---g~~fLrhie 235 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGL---GHQFLRHIE 235 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchH---HHHHHHHHh
Confidence 799999999999999999998874 56778888988887777776 7899999999997643322111 11122 125
Q ss_pred CCcEEEEEEeCCcc---ccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021699 119 TIDVLLYVDRLDVY---RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 119 ~~d~il~v~~~d~~---~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
+++++++|++++.. ........+.++|.........+|.++|+||+|+
T Consensus 236 r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 236 RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL 286 (424)
T ss_pred hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence 89999999877532 1112234455666554322234899999999997
No 54
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.67 E-value=6.8e-15 Score=121.50 Aligned_cols=118 Identities=21% Similarity=0.197 Sum_probs=75.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+++|.+|+|||||+|++++... .....+++.........+++. .+.+|||||..+.... ...++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~- 71 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAM-------REQYM- 71 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHH-------HHHHH-
Confidence 48999999999999999999998753 333333433333333445554 6889999998543221 12222
Q ss_pred cCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 117 NKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
..+|++++|++++... +. .-..++..+.+.... ...|+++|+||+|+...
T Consensus 72 -~~~~~~ilv~d~~~~~s~~-~~~~~~~~~~~~~~~-~~~piiiv~NK~Dl~~~ 122 (164)
T cd04145 72 -RTGEGFLLVFSVTDRGSFE-EVDKFHTQILRVKDR-DEFPMILVGNKADLEHQ 122 (164)
T ss_pred -hhCCEEEEEEECCCHHHHH-HHHHHHHHHHHHhCC-CCCCEEEEeeCcccccc
Confidence 5789999998876422 21 223345555443221 12699999999998543
No 55
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.67 E-value=5.4e-15 Score=121.88 Aligned_cols=114 Identities=22% Similarity=0.231 Sum_probs=72.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCccccc--CCCCCCCeeEEEEeeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVS--TFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~--~~~~~t~~~~~~~~~~~-g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+.|+++|.+|+|||||+|+|++....... ..+++|.........+. +..+.+|||||..+ +...+..++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-------~~~~~~~~~- 72 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-------FIKNMLAGA- 72 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-------HHHHHHhhh-
Confidence 47899999999999999999986422221 12344444444445555 77999999999732 112222222
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++.+. .........+..+.. .+. +|+++|+||+|+.
T Consensus 73 -~~ad~ii~V~d~~~-~~~~~~~~~~~~~~~-~~~---~~~ilv~NK~Dl~ 117 (164)
T cd04171 73 -GGIDLVLLVVAADE-GIMPQTREHLEILEL-LGI---KRGLVVLTKADLV 117 (164)
T ss_pred -hcCCEEEEEEECCC-CccHhHHHHHHHHHH-hCC---CcEEEEEECcccc
Confidence 58999999987753 222333344433322 231 4899999999985
No 56
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.67 E-value=6.1e-15 Score=122.14 Aligned_cols=118 Identities=17% Similarity=0.175 Sum_probs=75.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
++||+++|.+|+|||||+|+++.... .....+++..........++. .+.+|||||.......... ++
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~~- 70 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDL-------YM- 70 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHH-------HH-
Confidence 47999999999999999999996542 233334444333334455554 5679999998433222111 11
Q ss_pred cCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 117 NKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
.++|++++|++++... +.. ...++..+..... ....|+++|+||+|+.+.
T Consensus 71 -~~~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~ 121 (164)
T cd04175 71 -KNGQGFVLVYSITAQSTFND-LQDLREQILRVKD-TEDVPMILVGNKCDLEDE 121 (164)
T ss_pred -hhCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcC-CCCCCEEEEEECCcchhc
Confidence 5789999998876432 322 2345555554322 123699999999998643
No 57
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.67 E-value=1.4e-14 Score=120.18 Aligned_cols=121 Identities=21% Similarity=0.214 Sum_probs=76.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++++... .....++.+.+........++. .+.+|||||.... ......++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~-- 72 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF-------RTITSSYY-- 72 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhH-------HHHHHHHh--
Confidence 7999999999999999999998753 2222233333333334444543 6899999996321 11122222
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCC
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~ 173 (309)
..+|++++|++++.. ++.. -..++..+.+.... ..|+++|+||+|+......+
T Consensus 73 ~~~~~ii~v~d~~~~~s~~~-l~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~ 126 (166)
T cd01869 73 RGAHGIIIVYDVTDQESFNN-VKQWLQEIDRYASE--NVNKLLVGNKCDLTDKRVVD 126 (166)
T ss_pred CcCCEEEEEEECcCHHHHHh-HHHHHHHHHHhCCC--CCcEEEEEEChhcccccCCC
Confidence 589999999887532 1222 23455555544322 26899999999986444333
No 58
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.67 E-value=6.3e-15 Score=122.69 Aligned_cols=123 Identities=17% Similarity=0.197 Sum_probs=77.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+++|.+|+|||||+|++.+.+. .....+..+.+........++ ..+.+|||||..... .....++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-------~~~~~~~- 73 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSF-NPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFR-------TITTAYY- 73 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcC-CcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHH-------HHHHHHh-
Confidence 48999999999999999999998763 222222222222223334454 468999999963211 1112222
Q ss_pred cCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021699 117 NKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
.++|++++|++++... +.. -.+++..+...... ..|+++|+||+|+.+......
T Consensus 74 -~~ad~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~--~~p~iiv~nK~Dl~~~~~~~~ 128 (167)
T cd01867 74 -RGAMGIILVYDITDEKSFEN-IRNWMRNIEEHASE--DVERMLVGNKCDMEEKRVVSK 128 (167)
T ss_pred -CCCCEEEEEEECcCHHHHHh-HHHHHHHHHHhCCC--CCcEEEEEECcccccccCCCH
Confidence 5899999998875422 222 23466666554322 269999999999965443333
No 59
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.67 E-value=5.5e-15 Score=122.48 Aligned_cols=123 Identities=16% Similarity=0.190 Sum_probs=78.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
-++|+++|.+|+|||||+|++++... .....+..+.+........++. .+.+|||||... +......++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~- 73 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEF-NLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER-------YRAITSAYY- 73 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHH-------HHHHHHHHH-
Confidence 37999999999999999999998764 2223344444444444555554 689999999732 111122222
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021699 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
..++++++|+++... .+... ..++..+.+..... .|+++|+||+|+........
T Consensus 74 -~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~--~pi~vv~nK~Dl~~~~~~~~ 128 (165)
T cd01868 74 -RGAVGALLVYDITKKQTFENV-ERWLKELRDHADSN--IVIMLVGNKSDLRHLRAVPT 128 (165)
T ss_pred -CCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCC--CeEEEEEECccccccccCCH
Confidence 578999999887532 22222 34566665554322 68999999999864433333
No 60
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.66 E-value=1.6e-14 Score=123.19 Aligned_cols=163 Identities=14% Similarity=0.123 Sum_probs=96.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCC-CCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+||+++|.+|+|||||++++.+... ..+....+ +.........+++ ..+.||||||.... ......++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~- 71 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAF-LNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERF-------RSVTHAYY- 71 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHH-------HHhhHHHc-
Confidence 5899999999999999999998764 22222222 2222222334444 47889999996221 11112222
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccccc
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMK 196 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 196 (309)
..+|++++|++++....-..-..++..+.+..... .|+++|+||+|+..+.....++ .+.+....
T Consensus 72 -~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~~~~~~~~--------~~~l~~~~---- 136 (191)
T cd04112 72 -RDAHALLLLYDITNKASFDNIRAWLTEIKEYAQED--VVIMLLGNKADMSGERVVKRED--------GERLAKEY---- 136 (191)
T ss_pred -cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccchhccccCHHH--------HHHHHHHc----
Confidence 57999999988754211112244666666654332 6999999999986443333222 11222111
Q ss_pred ccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCC
Q 021699 197 KKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGS 248 (309)
Q Consensus 197 ~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~ 248 (309)
.+|++.+++. ++.+ +.+|++.+...+.+..
T Consensus 137 -------~~~~~e~Sa~----~~~~-----------v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 137 -------GVPFMETSAK----TGLN-----------VELAFTAVAKELKHRK 166 (191)
T ss_pred -------CCeEEEEeCC----CCCC-----------HHHHHHHHHHHHHHhc
Confidence 1466666653 3332 7888888887776653
No 61
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.66 E-value=7.1e-15 Score=122.10 Aligned_cols=120 Identities=13% Similarity=0.132 Sum_probs=73.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++.+..... ...+..+..........++ ..+.+|||||..+... ....++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~-------~~~~~~-- 71 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRT-------ITTAYY-- 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHHc--
Confidence 799999999999999999999876321 1122222222222233333 4789999999732211 111122
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
.++|++++|++++...-...-..+++.+.+..... .|+++|+||+|+.+...
T Consensus 72 ~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piivv~nK~Dl~~~~~ 123 (165)
T cd01865 72 RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVILVGNKCDMEDERV 123 (165)
T ss_pred cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CCEEEEEECcccCcccc
Confidence 68999999988754221122244666665543222 68999999999964443
No 62
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.66 E-value=7.1e-15 Score=122.11 Aligned_cols=121 Identities=21% Similarity=0.127 Sum_probs=75.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEe--eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR--SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~--~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++++... ..... ++......... ......+.+|||||..+..... ..+.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f-~~~~~-~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~-- 70 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF-RESYI-PTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQ-------RLSI-- 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCCcC-CcchheEEEEEEECCEEEEEEEEECCCCCcchHHH-------HHHh--
Confidence 7999999999999999999998763 21111 11111111122 2234578999999985432111 1111
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCcc-ccCcEEEEEecccCCCCCC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQ-IWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~-~~~~~iiV~tk~D~~~~~~ 171 (309)
..+|++++|++++..........+++.+.+..+.. ...|+++|+||+|+.+...
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~ 125 (165)
T cd04140 71 SKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE 125 (165)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCe
Confidence 58899999988865322223345666666654421 2369999999999864333
No 63
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.66 E-value=3.6e-15 Score=123.02 Aligned_cols=122 Identities=17% Similarity=0.120 Sum_probs=74.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC----CeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA----GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~----g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
+||+++|.+|+|||||+|++++... .....+..+.+.......+. +..+.+|||||..+. ......++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~ 72 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIF-TKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF-------DAITKAYY 72 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH-------HHhHHHHh
Confidence 5899999999999999999998753 11111222222222222332 457999999996321 11122233
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
+.+|++++|++++.......-..++..+..... ..|+++|+||+|+......+.
T Consensus 73 --~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~v~~ 126 (162)
T cd04106 73 --RGAQACILVFSTTDRESFEAIESWKEKVEAECG---DIPMVLVQTKIDLLDQAVITN 126 (162)
T ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhcccccCCCH
Confidence 689999999887643211222345555554332 269999999999865444333
No 64
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.66 E-value=1.2e-14 Score=119.46 Aligned_cols=117 Identities=20% Similarity=0.228 Sum_probs=73.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+++|.+|+|||||+|++++... .....+++..........++. .+.+|||||..+... ....++
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------l~~~~~- 70 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQYM- 70 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHH-------HHHHHH-
Confidence 37999999999999999999998763 222333333333333445554 578899999743211 112222
Q ss_pred cCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 117 NKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|++++|++++... +.. -..+...+.+.... ...|+++|+||+|+..
T Consensus 71 -~~~~~~i~v~~~~~~~s~~~-~~~~~~~i~~~~~~-~~~piivv~nK~Dl~~ 120 (162)
T cd04138 71 -RTGEGFLCVFAINSRKSFED-IHTYREQIKRVKDS-DDVPMVLVGNKCDLAA 120 (162)
T ss_pred -hcCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 4789999998876422 222 22344555444321 2369999999999853
No 65
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.66 E-value=2.1e-14 Score=119.11 Aligned_cols=121 Identities=13% Similarity=0.124 Sum_probs=76.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+++|.+|+|||||++++.+...... ..+..+.+........++ ..+.+|||||... .......++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~- 73 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSER-QGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQER-------FRTITQSYY- 73 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCccc-CCCccceEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHh-
Confidence 48999999999999999999987653221 112222233333455566 4789999999622 111122222
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
..+|++++|++++....-.....++..+....... .|+++|+||+|+...+.
T Consensus 74 -~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~~~~ 125 (165)
T cd01864 74 -RSANGAIIAYDITRRSSFESVPHWIEEVEKYGASN--VVLLLIGNKCDLEEQRE 125 (165)
T ss_pred -ccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccccc
Confidence 57899999988764321123345666666543222 68999999999865443
No 66
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.65 E-value=1e-14 Score=139.83 Aligned_cols=125 Identities=18% Similarity=0.180 Sum_probs=84.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
..|+|+|.+|+|||||+|+|++... .+++++.+|..+....+.+.+..+.|+||||+.+........-..+.+. ..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrh--ier 236 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRH--IER 236 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHH--HHh
Confidence 4799999999999999999999865 5688899999998888888888999999999975433221111111111 258
Q ss_pred CcEEEEEEeCCcc---ccChhHH-HHHHHHHHHhC---------ccccCcEEEEEecccCC
Q 021699 120 IDVLLYVDRLDVY---RVDNLDK-QITRAITDNFG---------EQIWKRALIVLTHAQLS 167 (309)
Q Consensus 120 ~d~il~v~~~d~~---~~~~~d~-~~l~~l~~~~g---------~~~~~~~iiV~tk~D~~ 167 (309)
+|++++|+++... +-...+. .+.+.|..... ....+|+|+|+||+|+.
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~ 297 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVP 297 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccch
Confidence 9999999766421 1001122 23334433321 12247999999999984
No 67
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.65 E-value=6.1e-15 Score=121.76 Aligned_cols=120 Identities=16% Similarity=0.134 Sum_probs=75.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
++||+++|++|+|||||+|++++.+... ...+..+.........+++ ..+.+|||||.... ......++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~- 71 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSE-NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERY-------RSLAPMYY- 71 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHH-------HHHHHHHh-
Confidence 3799999999999999999999987432 1122222222223334444 57889999996321 11111122
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
.++|++++|++++...--.....++..+...... ..|+++|+||+|+.+..
T Consensus 72 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~~~ 122 (163)
T cd01860 72 -RGAAAAIVVYDITSEESFEKAKSWVKELQRNASP--NIIIALVGNKADLESKR 122 (163)
T ss_pred -ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccccC
Confidence 5889999998875422112334566666665432 26899999999986433
No 68
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.65 E-value=1.3e-15 Score=127.17 Aligned_cols=118 Identities=22% Similarity=0.240 Sum_probs=77.6
Q ss_pred EEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-CeEEEEEeCCCCCCCCCC----cHHHHHHHHHhhhcC
Q 021699 44 VMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYV----NYHAIQLIKRFLLNK 118 (309)
Q Consensus 44 vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~l~liDTPG~~~~~~~----~~~~~~~i~~~~~~~ 118 (309)
++|++|+|||||+|+|++.+. .++..+++|..+......+. +.++.+|||||+.+.... ..++...+ .
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~------~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHI------R 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHH------h
Confidence 589999999999999999875 55666777777766666677 889999999998643221 11222222 4
Q ss_pred CCcEEEEEEeCCccc-----cC-hhHHHHHHHHHHHhCc-----cccCcEEEEEecccCCC
Q 021699 119 TIDVLLYVDRLDVYR-----VD-NLDKQITRAITDNFGE-----QIWKRALIVLTHAQLSL 168 (309)
Q Consensus 119 ~~d~il~v~~~d~~~-----~~-~~d~~~l~~l~~~~g~-----~~~~~~iiV~tk~D~~~ 168 (309)
++|++++|++.+... .. .....+...+...... ...+|+++|+||+|+..
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 134 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD 134 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc
Confidence 799999997765321 11 1112233333322111 12379999999999863
No 69
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.65 E-value=6.9e-15 Score=125.91 Aligned_cols=150 Identities=14% Similarity=0.067 Sum_probs=94.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCC------ccccc---------CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEK------AVTVS---------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 103 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~------~~~~~---------~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~ 103 (309)
+++|+++|..++|||||+++|++.. ..... ...+.|.......++.++..+.++||||+.+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~---- 77 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD---- 77 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH----
Confidence 5899999999999999999998641 00000 1234455555555667788999999999842
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhH
Q 021699 104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSE 183 (309)
Q Consensus 104 ~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~ 183 (309)
+...+...+ ..+|++++|++.+. .+...+.+.+..+.+. |. .++|+|+||+|+... ++..+...+
T Consensus 78 ---~~~~~~~~~--~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~-~~---~~iIvviNK~D~~~~-----~~~~~~~~~ 142 (195)
T cd01884 78 ---YIKNMITGA--AQMDGAILVVSATD-GPMPQTREHLLLARQV-GV---PYIVVFLNKADMVDD-----EELLELVEM 142 (195)
T ss_pred ---HHHHHHHHh--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CcEEEEEeCCCCCCc-----HHHHHHHHH
Confidence 222222222 58999999977653 4667777777766553 31 247899999998521 112222224
Q ss_pred HHHHhhcccccccccccccCCCcEEEeccc
Q 021699 184 ALLKFVSPSTWMKKKDIQGSFVPVVLVENS 213 (309)
Q Consensus 184 ~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~ 213 (309)
.+++.+.+. ++ ....+|++++|+.
T Consensus 143 ~i~~~l~~~-g~-----~~~~v~iipiSa~ 166 (195)
T cd01884 143 EVRELLSKY-GF-----DGDNTPIVRGSAL 166 (195)
T ss_pred HHHHHHHHh-cc-----cccCCeEEEeeCc
Confidence 455555432 11 1224899999874
No 70
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.65 E-value=3.1e-14 Score=118.68 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=77.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
-+||+++|.+|+|||||+|++++...... ..+..+.+........++ ..+.||||||..+ .......++
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~- 74 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDGKQIKLQIWDTAGQES-------FRSITRSYY- 74 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHh-
Confidence 38999999999999999999998764222 222223333333344444 4789999999621 111122233
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
..+|++++|++++.......-..++..+.+..... .|+++|+||+|+..+...+.
T Consensus 75 -~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pvivv~nK~Dl~~~~~~~~ 129 (168)
T cd01866 75 -RGAAGALLVYDITRRETFNHLTSWLEDARQHSNSN--MTIMLIGNKCDLESRREVSY 129 (168)
T ss_pred -ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccCCCH
Confidence 58999999988753221122234665565543222 68999999999865444333
No 71
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.65 E-value=2.6e-14 Score=117.86 Aligned_cols=119 Identities=18% Similarity=0.182 Sum_probs=76.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++++... .....+..+.+........++ ..+.+|||||... +......++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~-- 70 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQER-------FRSITSSYY-- 70 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHh--
Confidence 5899999999999999999998764 222223333333334455555 4788999999622 111222233
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
..+|++++|+++... ++.. -..++..+....+. ..|+++|+||+|+.....
T Consensus 71 ~~~d~~ilv~d~~~~~s~~~-~~~~l~~~~~~~~~--~~pivvv~nK~D~~~~~~ 122 (164)
T smart00175 71 RGAVGALLVYDITNRESFEN-LKNWLKELREYADP--NVVIMLVGNKSDLEDQRQ 122 (164)
T ss_pred CCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCCC--CCeEEEEEEchhcccccC
Confidence 589999999877532 2211 12355555554332 279999999999864433
No 72
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.65 E-value=9.1e-15 Score=120.93 Aligned_cols=118 Identities=19% Similarity=0.187 Sum_probs=73.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++.+.... ....+++..........++ ..+.+|||||..+.... ...++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~-------~~~~~-- 69 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFV--DDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAM-------RDQYM-- 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHH-------HHHHH--
Confidence 48999999999999999999987632 2222333333333444444 46789999998543221 11222
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
..+|++++|++++....-..-..+...+.+.... ...|+++|+||+|+.+.
T Consensus 70 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~~ 120 (164)
T smart00173 70 RTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLESE 120 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence 4789999998876421111223344444443322 13699999999998643
No 73
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.65 E-value=1.7e-14 Score=119.33 Aligned_cols=117 Identities=18% Similarity=0.159 Sum_probs=75.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+++|+++|.+|+|||||++++++.... ....++...........+|. .+.||||||.......... +.
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~~- 70 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDL-------YI- 70 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHH-------HH-
Confidence 379999999999999999999987542 22222322333334445554 5778999997543322211 11
Q ss_pred cCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 117 NKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++... +. .-..++..+.+..+. ...|+++|+||+|+.+
T Consensus 71 -~~ad~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~-~~~piviv~nK~Dl~~ 120 (163)
T cd04176 71 -KNGQGFIVVYSLVNQQTFQ-DIKPMRDQIVRVKGY-EKVPIILVGNKVDLES 120 (163)
T ss_pred -hhCCEEEEEEECCCHHHHH-HHHHHHHHHHHhcCC-CCCCEEEEEECccchh
Confidence 5889999998876432 22 224455566554321 2379999999999854
No 74
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.65 E-value=2.1e-15 Score=144.54 Aligned_cols=120 Identities=17% Similarity=0.251 Sum_probs=92.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHhhhcC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFLLNK 118 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~-~~~~~~~~i~~~~~~~ 118 (309)
.+|+++|.+|||||||+|+|++...+.++..+++|.+.......++|..+.+|||||+.+... ...........+ ..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~--~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELA--IE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHH--HH
Confidence 589999999999999999999998777888888888888888888999999999999975221 111111112222 26
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+|++|+|++... +++..+..+.+.+.+. + .|+++|+||+|+.
T Consensus 80 ~ad~il~vvd~~~-~~~~~~~~~~~~l~~~-~----~piilv~NK~D~~ 122 (435)
T PRK00093 80 EADVILFVVDGRA-GLTPADEEIAKILRKS-N----KPVILVVNKVDGP 122 (435)
T ss_pred hCCEEEEEEECCC-CCCHHHHHHHHHHHHc-C----CcEEEEEECccCc
Confidence 8999999977643 4677777777777654 2 7999999999964
No 75
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.64 E-value=1.2e-14 Score=126.35 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=77.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+||+++|.+|+|||||+|++++... .....+..+.+.......+. ...+.||||||.... ......++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~-------~~l~~~~~- 71 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGF-GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIG-------GKMLDKYI- 71 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHH-------HHHHHHHh-
Confidence 5899999999999999999998753 22222233334333344443 357899999996321 11222233
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCc-cccCcEEEEEecccCCCCCC
Q 021699 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~-~~~~~~iiV~tk~D~~~~~~ 171 (309)
.++|++++|++++.. ++. .-..++..+.+.... ....|+++|+||+|+..+..
T Consensus 72 -~~ad~iilV~D~t~~~s~~-~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~ 126 (215)
T cd04109 72 -YGAHAVFLVYDVTNSQSFE-NLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT 126 (215)
T ss_pred -hcCCEEEEEEECCCHHHHH-HHHHHHHHHHHhccccCCCceEEEEEECcccccccc
Confidence 589999999887642 232 223466667665442 22247899999999864433
No 76
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.64 E-value=3.5e-14 Score=119.43 Aligned_cols=123 Identities=16% Similarity=0.114 Sum_probs=74.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC------------CeEEEEEeCCCCCCCCCCcHH
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA------------GFTLNIVDTPGLIEGGYVNYH 106 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~------------g~~l~liDTPG~~~~~~~~~~ 106 (309)
.+||+++|.+|+|||||+|++.+... .....+..+.+.......+. ...+.||||||...
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------- 75 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKF-NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQER------- 75 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHH-------
Confidence 48999999999999999999998753 22222222222222222221 25789999999622
Q ss_pred HHHHHHHhhhcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCC
Q 021699 107 AIQLIKRFLLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (309)
Q Consensus 107 ~~~~i~~~~~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~ 173 (309)
+......++ .++|++++|++++... +.. -..++..+..... ....|+++|+||+|+.+....+
T Consensus 76 ~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~v~ 139 (180)
T cd04127 76 FRSLTTAFF--RDAMGFLLIFDLTNEQSFLN-VRNWMSQLQTHAY-CENPDIVLCGNKADLEDQRQVS 139 (180)
T ss_pred HHHHHHHHh--CCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcC-CCCCcEEEEEeCccchhcCccC
Confidence 111222223 6899999998876421 222 2345555554322 1126899999999986544333
No 77
>PRK04213 GTP-binding protein; Provisional
Probab=99.64 E-value=2.2e-14 Score=123.10 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=76.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH----HHHHHHHH
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY----HAIQLIKR 113 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~----~~~~~i~~ 113 (309)
..++|+++|.+|+|||||+|+|++.. +.++..+++|..+... .++ .+.+|||||++......+ .+...+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 45899999999999999999999976 3555666666554433 222 689999999865443332 22222222
Q ss_pred hhh--cCCCcEEEEEEeCCcc-cc---------ChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 114 FLL--NKTIDVLLYVDRLDVY-RV---------DNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 114 ~~~--~~~~d~il~v~~~d~~-~~---------~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++. ...++++++|++.+.. .+ ...+..+...+... ..|+++|+||+|+.
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~p~iiv~NK~Dl~ 143 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL-----GIPPIVAVNKMDKI 143 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc-----CCCeEEEEECcccc
Confidence 332 2467889999665421 01 11233444444321 27999999999985
No 78
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.64 E-value=2.6e-15 Score=129.88 Aligned_cols=113 Identities=15% Similarity=0.125 Sum_probs=74.7
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccC------------------------------CCCCCCeeEEEEeeeCCeEEE
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVST------------------------------FQSEGPRPVMVSRSRAGFTLN 90 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~------------------------------~~~~t~~~~~~~~~~~g~~l~ 90 (309)
||+++|++|+|||||+|+|+.......+. ..+.|.+.....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 68999999999999999998765433210 134455555666677888999
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 91 IVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 91 liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
||||||+.+ +...+...+ ..+|++++|++... .....+......+. ..+. +++|+|+||+|+.
T Consensus 81 liDTpG~~~-------~~~~~~~~~--~~ad~~llVvD~~~-~~~~~~~~~~~~~~-~~~~---~~iIvviNK~D~~ 143 (208)
T cd04166 81 IADTPGHEQ-------YTRNMVTGA--STADLAILLVDARK-GVLEQTRRHSYILS-LLGI---RHVVVAVNKMDLV 143 (208)
T ss_pred EEECCcHHH-------HHHHHHHhh--hhCCEEEEEEECCC-CccHhHHHHHHHHH-HcCC---CcEEEEEEchhcc
Confidence 999999732 111111222 58999999977653 34444444443333 3332 4678899999985
No 79
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.64 E-value=1.2e-14 Score=123.76 Aligned_cols=120 Identities=17% Similarity=0.174 Sum_probs=74.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
+|+++|.+|+|||||+|++.+.... ....+++..........++. .+.||||||..+..... ..++ .
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~--~ 69 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV--ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALR-------DQWI--R 69 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHH-------HHHH--H
Confidence 5899999999999999999976532 22233332222223345554 58899999974322111 1122 5
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCc-cccCcEEEEEecccCCCCCC
Q 021699 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~-~~~~~~iiV~tk~D~~~~~~ 171 (309)
++|++++|++++.......-..++..+...... ....|+++|+||+|+.....
T Consensus 70 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~ 123 (190)
T cd04144 70 EGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYERE 123 (190)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCc
Confidence 889999998876422112224466666554321 12369999999999864433
No 80
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.64 E-value=7.7e-15 Score=124.86 Aligned_cols=166 Identities=17% Similarity=0.279 Sum_probs=105.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccc-----------------cCCCCCCCeeEEEEee--eCCeEEEEEeCCCCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTV-----------------STFQSEGPRPVMVSRS--RAGFTLNIVDTPGLI 98 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~-----------------~~~~~~t~~~~~~~~~--~~g~~l~liDTPG~~ 98 (309)
+..+|+++|..++|||||+++|++...... ....+.|......... ..+..++++||||..
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 357999999999999999999996532110 0112345555555666 788999999999983
Q ss_pred CCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHH
Q 021699 99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFC 178 (309)
Q Consensus 99 ~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~ 178 (309)
+ +...+...+ ..+|++++|++... .+.....+.+..+... + .|+++|+||+|+. ...+++..
T Consensus 82 ~-------f~~~~~~~~--~~~D~ailvVda~~-g~~~~~~~~l~~~~~~-~----~p~ivvlNK~D~~---~~~~~~~~ 143 (188)
T PF00009_consen 82 D-------FIKEMIRGL--RQADIAILVVDAND-GIQPQTEEHLKILREL-G----IPIIVVLNKMDLI---EKELEEII 143 (188)
T ss_dssp H-------HHHHHHHHH--TTSSEEEEEEETTT-BSTHHHHHHHHHHHHT-T-----SEEEEEETCTSS---HHHHHHHH
T ss_pred c-------eeeccccee--cccccceeeeeccc-cccccccccccccccc-c----cceEEeeeeccch---hhhHHHHH
Confidence 2 222222222 68999999977653 4667777777777554 2 6899999999986 11222222
Q ss_pred HhhhHHHH-HhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021699 179 SKRSEALL-KFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 179 ~~~~~~l~-~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
+.++ .+++.. .+.. ...+|++++|+. ++.+ +..|++.+...++
T Consensus 144 ----~~~~~~l~~~~-~~~~----~~~~~vi~~Sa~----~g~g-----------i~~Ll~~l~~~~P 187 (188)
T PF00009_consen 144 ----EEIKEKLLKEY-GENG----EEIVPVIPISAL----TGDG-----------IDELLEALVELLP 187 (188)
T ss_dssp ----HHHHHHHHHHT-TSTT----TSTEEEEEEBTT----TTBT-----------HHHHHHHHHHHS-
T ss_pred ----HHHHHHhcccc-ccCc----cccceEEEEecC----CCCC-----------HHHHHHHHHHhCc
Confidence 3333 333222 1110 023799998873 4433 7888888887765
No 81
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.64 E-value=1.5e-14 Score=121.10 Aligned_cols=126 Identities=21% Similarity=0.308 Sum_probs=77.6
Q ss_pred HHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 021699 27 ELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH 106 (309)
Q Consensus 27 ~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~ 106 (309)
.++++.+.+. .+++|+++|.+|+|||||+|++++.......+ |.........+++..+.+|||||.... .
T Consensus 3 ~~~~~~~~~~-~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~----t~g~~~~~~~~~~~~l~l~D~~G~~~~---~-- 72 (173)
T cd04154 3 TIIRKQKLKE-REMRILILGLDNAGKTTILKKLLGEDIDTISP----TLGFQIKTLEYEGYKLNIWDVGGQKTL---R-- 72 (173)
T ss_pred hhhhhhhcCC-CccEEEEECCCCCCHHHHHHHHccCCCCCcCC----ccccceEEEEECCEEEEEEECCCCHHH---H--
Confidence 3455555444 45999999999999999999999875322211 211222334556889999999998421 1
Q ss_pred HHHHHHHhhhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 107 AIQLIKRFLLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 107 ~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.....++ .++|++++|++.+.. ++... ..++..+.... .....|+++|+||+|+..
T Consensus 73 --~~~~~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 73 --PYWRNYF--ESTDALIWVVDSSDRLRLDDC-KRELKELLQEE-RLAGATLLILANKQDLPG 129 (173)
T ss_pred --HHHHHHh--CCCCEEEEEEECCCHHHHHHH-HHHHHHHHhCh-hhcCCCEEEEEECccccc
Confidence 1112222 689999999887542 22222 22333332211 112379999999999853
No 82
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.64 E-value=1.1e-14 Score=147.07 Aligned_cols=121 Identities=17% Similarity=0.260 Sum_probs=89.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC-----cHHHHHHHHH
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-----NYHAIQLIKR 113 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~-----~~~~~~~i~~ 113 (309)
.++|+++|.+|+|||||+|+|+|.+. .+++.+++|.+........++.++.+|||||..+.... .++. ..+.
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~--i~~~ 79 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQ--IACH 79 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHH--HHHH
Confidence 47999999999999999999999875 78888999998888788888899999999999764321 1121 2244
Q ss_pred hhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021699 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 114 ~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
++....+|++++|++.+ ... ....+...+.+. | .|+++|+||+|..+.+
T Consensus 80 ~l~~~~aD~vI~VvDat--~le-r~l~l~~ql~e~-g----iPvIvVlNK~Dl~~~~ 128 (772)
T PRK09554 80 YILSGDADLLINVVDAS--NLE-RNLYLTLQLLEL-G----IPCIVALNMLDIAEKQ 128 (772)
T ss_pred HHhccCCCEEEEEecCC--cch-hhHHHHHHHHHc-C----CCEEEEEEchhhhhcc
Confidence 55557899999995543 332 223344444432 2 7999999999986443
No 83
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.64 E-value=2.4e-14 Score=119.01 Aligned_cols=123 Identities=17% Similarity=0.162 Sum_probs=75.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCC-CCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+||+++|.+|+|||||++++.+... ....+++ +.+........++. .+.+|||||.... ......++
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~- 72 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERF-------RAVTRSYY- 72 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHh-
Confidence 7999999999999999999998753 2222222 22222223344443 6899999997321 11122222
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
.++|++++|++++.......-..++..+....... .|+++|+||+|+......+.+
T Consensus 73 -~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iiiv~nK~Dl~~~~~~~~~ 128 (166)
T cd04122 73 -RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLEAQRDVTYE 128 (166)
T ss_pred -cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccccCcCHH
Confidence 58999999988764211122234555444433222 689999999999655444433
No 84
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.63 E-value=2.7e-14 Score=118.87 Aligned_cols=122 Identities=17% Similarity=0.117 Sum_probs=73.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++++... .....+..+.+.......+.+. .+.+|||||..... .....++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~-- 70 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ-------SLGVAFY-- 70 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH-------hHHHHHh--
Confidence 5899999999999999999998763 2222222233333334445554 56799999973221 1112222
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCc--cccCcEEEEEecccCCCCCC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~--~~~~~~iiV~tk~D~~~~~~ 171 (309)
.++|++++|++++.......-..+.+.+...+.. ....|+++|+||+|+..++.
T Consensus 71 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 126 (172)
T cd01862 71 RGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ 126 (172)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccc
Confidence 6899999998875422111122344444443321 11369999999999975443
No 85
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.63 E-value=2.6e-14 Score=123.08 Aligned_cols=119 Identities=18% Similarity=0.240 Sum_probs=77.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+.|+++|.+|||||||++++..... .....+..+.........++| ..+.||||+|...... ....++
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f-~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~-------l~~~y~-- 70 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTF-CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS-------ITSAYY-- 70 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHH-------HHHHHh--
Confidence 4799999999999999999997653 222122223333334455666 5789999999843211 112222
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
.++|++++|++++.. ++... ..++..+.+..... .|+++|+||+|+.+..+
T Consensus 71 ~~ad~iIlVfDvtd~~Sf~~l-~~w~~~i~~~~~~~--~piilVgNK~DL~~~~~ 122 (202)
T cd04120 71 RSAKGIILVYDITKKETFDDL-PKWMKMIDKYASED--AELLLVGNKLDCETDRE 122 (202)
T ss_pred cCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCC--CcEEEEEECcccccccc
Confidence 689999999988653 24333 34666665554333 69999999999864443
No 86
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.63 E-value=1.2e-14 Score=146.87 Aligned_cols=120 Identities=20% Similarity=0.261 Sum_probs=93.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHhhhcC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFLLNK 118 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~-~~~~~~~~i~~~~~~~ 118 (309)
.+|+++|.+|||||||+|+|+|...+.+++.+++|++.......+++..+.+|||||+..... ....+.+....++ .
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~--~ 353 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV--S 353 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH--H
Confidence 689999999999999999999988777888899998888878888899999999999864221 1222222222222 6
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+|++|+|++... .++..+..+.+.+.+. .+|+++|+||+|+.
T Consensus 354 ~aD~iL~VvDa~~-~~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~ 396 (712)
T PRK09518 354 LADAVVFVVDGQV-GLTSTDERIVRMLRRA-----GKPVVLAVNKIDDQ 396 (712)
T ss_pred hCCEEEEEEECCC-CCCHHHHHHHHHHHhc-----CCCEEEEEECcccc
Confidence 8999999977643 4677787787777643 27999999999974
No 87
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.63 E-value=6.6e-14 Score=119.35 Aligned_cols=121 Identities=23% Similarity=0.275 Sum_probs=79.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHH
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKR 113 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~---~~~~~~i~~ 113 (309)
..++|+++|.+|+|||||+|+|++.+ ...+++.+++|........ +.++.||||||+....... ++....+..
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 46899999999999999999999975 4455555566654433322 4689999999986533222 222223333
Q ss_pred hhh-cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 114 FLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 114 ~~~-~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++. ...++++++|++.+. ..+..+..+.+.+.. .+ .++++++||+|+.
T Consensus 100 ~~~~~~~~~~~~~v~d~~~-~~~~~~~~i~~~l~~-~~----~~~iiv~nK~Dl~ 148 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRH-PLKELDLQMIEWLKE-YG----IPVLIVLTKADKL 148 (196)
T ss_pred HHHhCccceEEEEEEecCC-CCCHHHHHHHHHHHH-cC----CcEEEEEECcccC
Confidence 442 235678888865443 355555555655533 22 6899999999986
No 88
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.63 E-value=3.1e-14 Score=119.39 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=76.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.++|+++|.+|+|||||++++.+.... ....++..........+++. .+.||||||..+.... ...++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l-------~~~~~- 71 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAM-------RDQYM- 71 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHH-------hHHHh-
Confidence 489999999999999999999987532 22222222223334455563 6889999998432211 11222
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCC
Q 021699 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~ 173 (309)
..+|++++|++++.. ++... ..+.+.+.+... ....|+++|+||+|+......+
T Consensus 72 -~~~d~~ilv~d~~~~~Sf~~~-~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~~~v~ 126 (172)
T cd04141 72 -RCGEGFIICYSVTDRHSFQEA-SEFKKLITRVRL-TEDIPLVLVGNKVDLESQRQVT 126 (172)
T ss_pred -hcCCEEEEEEECCchhHHHHH-HHHHHHHHHhcC-CCCCCEEEEEEChhhhhcCccC
Confidence 578999999888643 23222 335555555422 1237999999999986443333
No 89
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.63 E-value=2.1e-14 Score=118.52 Aligned_cols=120 Identities=14% Similarity=0.110 Sum_probs=74.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|+|++..... ...+..+..........++ ..+.+|||||.... ......++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-------~~~~~~~~-- 70 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKE-DSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERF-------RSVTRSYY-- 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCEEEEEEEEECcchHHH-------HHhHHHHh--
Confidence 589999999999999999999876322 1222222222223334444 46889999997321 11122223
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
..+|++++|++++...-...-..++..+....... .|+++|+||+|+.....
T Consensus 71 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~ 122 (161)
T cd04113 71 RGAAGALLVYDITNRTSFEALPTWLSDARALASPN--IVVILVGNKSDLADQRE 122 (161)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcchhcc
Confidence 58999999988864221122234555555444333 68999999999865443
No 90
>PRK11058 GTPase HflX; Provisional
Probab=99.63 E-value=3.4e-14 Score=135.05 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=82.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHhh-hc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFL-LN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-~l~liDTPG~~~~~~~~~~~~~~i~~~~-~~ 117 (309)
.+|+++|.+|+|||||+|+|++.+.+ +.+.+++|.++......+.+. .+.++||||+... ......+.+...+ ..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~tl~~~ 274 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKATLQET 274 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHHHHHh
Confidence 58999999999999999999998864 667778888887766666654 8999999999432 1122222222222 23
Q ss_pred CCCcEEEEEEeCCccccChhHHH-HHHHHHHHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQ-ITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~-~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++|+|++.+.. ....+.. +.+.+... +. ...|+++|+||+|+.
T Consensus 275 ~~ADlIL~VvDaS~~-~~~e~l~~v~~iL~el-~~-~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 275 RQATLLLHVVDAADV-RVQENIEAVNTVLEEI-DA-HEIPTLLVMNKIDML 322 (426)
T ss_pred hcCCEEEEEEeCCCc-cHHHHHHHHHHHHHHh-cc-CCCCEEEEEEcccCC
Confidence 689999999776432 1222322 22333332 21 127999999999985
No 91
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.63 E-value=2e-14 Score=118.99 Aligned_cols=115 Identities=12% Similarity=0.092 Sum_probs=71.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||++++++...... ..+.............++ ..+.+|||||....... ...++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~-- 70 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQ-QLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTM-------HASYY-- 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-cCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhh-------hHHHh--
Confidence 5899999999999999999997653111 111111112222233444 46889999997432211 12222
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++++..........++..+.+... ..|+++|+||+|+.
T Consensus 71 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~p~ivv~nK~Dl~ 117 (161)
T cd04124 71 HKAHACILVFDVTRKITYKNLSKWYEELREYRP---EIPCIVVANKIDLD 117 (161)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEECccCc
Confidence 589999999887542111222456666655432 26999999999983
No 92
>PTZ00369 Ras-like protein; Provisional
Probab=99.63 E-value=2.7e-14 Score=121.54 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=74.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..+||+++|.+|+|||||++++.+.... ....++..........+++ ..+.+|||||..+...... .++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~-------~~~ 74 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFI--DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRD-------QYM 74 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHH-------HHh
Confidence 4599999999999999999999987532 2222222222222333444 3578999999855332221 122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++....-..-..+...+.+.... ...|+++|+||+|+.+
T Consensus 75 --~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 75 --RTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLDS 124 (189)
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 5899999998875422112233455555554322 1368999999999853
No 93
>PLN03118 Rab family protein; Provisional
Probab=99.62 E-value=2.3e-14 Score=124.20 Aligned_cols=122 Identities=18% Similarity=0.196 Sum_probs=73.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..+||+++|.+|+|||||+|++++....... +..+.......+..++ ..+.||||||..+..... ..++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~-------~~~~ 83 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLA--PTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLT-------SSYY 83 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcC--CCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHH-------HHHH
Confidence 3599999999999999999999987642221 2222222223334444 478999999984432211 1222
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021699 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
..+|++++|++++.. .+......+...+... ......++++|+||+|+.....
T Consensus 84 --~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~-~~~~~~~~ilv~NK~Dl~~~~~ 137 (211)
T PLN03118 84 --RNAQGIILVYDVTRRETFTNLSDVWGKEVELY-STNQDCVKMLVGNKVDRESERD 137 (211)
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECccccccCc
Confidence 588999999887542 1222222233333322 2222258999999999864443
No 94
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.6e-14 Score=119.47 Aligned_cols=164 Identities=14% Similarity=0.120 Sum_probs=111.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..+||+++|.+|||||||+-++...+. .....+..+....+.....++ .++.||||+|..........++
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F-~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYy------- 75 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQF-HENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYY------- 75 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCcc-ccccccccccEEEEEEEEeCCcEEEEEEEEcCCccccccccccee-------
Confidence 359999999999999999988887653 222233444555555666655 5788999999966544433322
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
++++++|+|++++...-...-+.|++.|++..+++ .-+.+|+||+|+.....+++++.... .+.
T Consensus 76 --RgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~--~vialvGNK~DL~~~R~V~~~ea~~y-----Ae~------- 139 (200)
T KOG0092|consen 76 --RGANAAIVVYDITDEESFEKAKNWVKELQRQASPN--IVIALVGNKADLLERREVEFEEAQAY-----AES------- 139 (200)
T ss_pred --cCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCC--eEEEEecchhhhhhcccccHHHHHHH-----HHh-------
Confidence 69999999999975433345578999998886643 34567999999987777777665321 111
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021699 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
.+.+++-.+++ ++.+ ++++...|...++..
T Consensus 140 -------~gll~~ETSAK----Tg~N-----------v~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 140 -------QGLLFFETSAK----TGEN-----------VNEIFQAIAEKLPCS 169 (200)
T ss_pred -------cCCEEEEEecc----cccC-----------HHHHHHHHHHhccCc
Confidence 12566656553 4433 778888877777665
No 95
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.62 E-value=3.6e-14 Score=116.56 Aligned_cols=119 Identities=18% Similarity=0.147 Sum_probs=74.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++++..... ...+.++...........+ ..+.+|||||...... ....++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~-- 70 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA-------LGPIYY-- 70 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH-------hhHHHh--
Confidence 589999999999999999999876422 2222222222222333334 3689999999632211 111122
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
..+|++++|++++....-..-..+++.+...... ..|+++|+||+|+....
T Consensus 71 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~~ 121 (162)
T cd04123 71 RDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQR 121 (162)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccccc
Confidence 5789999998875432112223455566555443 37999999999986443
No 96
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.62 E-value=1.7e-14 Score=123.14 Aligned_cols=113 Identities=18% Similarity=0.170 Sum_probs=69.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC------cccccCCCCCCCeeEEEEeeeC--------------CeEEEEEeCCCCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK------AVTVSTFQSEGPRPVMVSRSRA--------------GFTLNIVDTPGLIE 99 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~------~~~~~~~~~~t~~~~~~~~~~~--------------g~~l~liDTPG~~~ 99 (309)
++|+++|.+|+|||||+|+|++.. .......+++|.........+. +..+.+|||||..+
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999999731 1112222344444333333332 66899999999821
Q ss_pred CCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 100 ~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
....+... ...+|++++|++... ..+..+.+.+.. ....+ .|+++|+||+|+.
T Consensus 81 ---~~~~~~~~------~~~~d~vi~VvD~~~-~~~~~~~~~~~~-~~~~~----~~~iiv~NK~Dl~ 133 (192)
T cd01889 81 ---LIRTIIGG------AQIIDLMLLVVDATK-GIQTQTAECLVI-GEILC----KKLIVVLNKIDLI 133 (192)
T ss_pred ---HHHHHHHH------HhhCCEEEEEEECCC-CccHHHHHHHHH-HHHcC----CCEEEEEECcccC
Confidence 11111111 257899999977643 233344333332 22222 6899999999986
No 97
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.62 E-value=4.3e-14 Score=118.94 Aligned_cols=114 Identities=23% Similarity=0.225 Sum_probs=75.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||++++.+... .....++...........++ ..+.||||||..+....... ++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~~-- 70 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL-------SY-- 70 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhh-------hc--
Confidence 7899999999999999999998653 22332332222332344556 46889999999543322211 11
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++++.. ++......++..+....+ ..|+++|+||+|+.
T Consensus 71 ~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~ 118 (175)
T cd01874 71 PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP---KTPFLLVGTQIDLR 118 (175)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhh
Confidence 589999999888643 233333346666655432 26999999999985
No 98
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.62 E-value=2.7e-14 Score=120.51 Aligned_cols=113 Identities=12% Similarity=0.069 Sum_probs=75.5
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccC---------------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY 105 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~---------------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~ 105 (309)
+|+|+|.+|+|||||+|+|++........ ..+.+...........+..+.+|||||..+. ..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~---~~ 77 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF---SS 77 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH---HH
Confidence 58999999999999999999876432211 1223334444455566789999999998432 11
Q ss_pred HHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 106 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 106 ~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
. ...++ ..+|++++|++... ..+..+.+++..+.. . ..|+++|+||+|+..
T Consensus 78 ~----~~~~~--~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~-~----~~~i~iv~nK~D~~~ 128 (189)
T cd00881 78 E----VIRGL--SVSDGAILVVDANE-GVQPQTREHLRIARE-G----GLPIIVAINKIDRVG 128 (189)
T ss_pred H----HHHHH--HhcCEEEEEEECCC-CCcHHHHHHHHHHHH-C----CCCeEEEEECCCCcc
Confidence 1 22222 48899999977643 344455566655544 1 279999999999874
No 99
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.62 E-value=4.3e-14 Score=120.45 Aligned_cols=121 Identities=15% Similarity=0.184 Sum_probs=80.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+++|..|+|||||++++.+... .....+..+.......+..++ ..+.||||||..... .....+.
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~-------~l~~~~~- 76 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGST-ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFC-------TIFRSYS- 76 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHh-
Confidence 58999999999999999999997642 111112223333334455566 478899999984321 1112222
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCC
Q 021699 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~ 173 (309)
.++|++|+|++++.. ++... ..|++.+.+... ..|+++|+||.|+......+
T Consensus 77 -~~ad~illVfD~t~~~Sf~~~-~~w~~~i~~~~~---~~piilVGNK~DL~~~~~v~ 129 (189)
T cd04121 77 -RGAQGIILVYDITNRWSFDGI-DRWIKEIDEHAP---GVPKILVGNRLHLAFKRQVA 129 (189)
T ss_pred -cCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCC---CCCEEEEEECccchhccCCC
Confidence 699999999998643 34444 467777766543 26999999999986443433
No 100
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.62 E-value=4.5e-14 Score=116.95 Aligned_cols=121 Identities=15% Similarity=0.200 Sum_probs=76.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
++|+++|.+|+|||||++++++... .....+..+..........++ ..+.+|||||...... ....+.
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-------~~~~~~-- 70 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEF-HSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT-------ITKQYY-- 70 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh-------hHHHHh--
Confidence 5899999999999999999998764 222222222233333445555 4678999999733211 112222
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCC
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~ 173 (309)
..+|++++|++++.. ++.. -..+++.+...... ..|+++|.||.|+......+
T Consensus 71 ~~~~~~i~v~d~~~~~sf~~-~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~~~v~ 124 (161)
T cd04117 71 RRAQGIFLVYDISSERSYQH-IMKWVSDVDEYAPE--GVQKILIGNKADEEQKRQVG 124 (161)
T ss_pred cCCcEEEEEEECCCHHHHHH-HHHHHHHHHHhCCC--CCeEEEEEECcccccccCCC
Confidence 588999999888653 2322 24466666554322 26899999999986544433
No 101
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.61 E-value=4.9e-14 Score=121.14 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=72.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+||+++|.+|+|||||+|++++... .....+..+.+.....+.++ ...+.+|||||....... ...++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~-~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~-------~~~~~- 71 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIF-SQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGM-------TRVYY- 71 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhh-------HHHHh-
Confidence 5899999999999999999998753 11111222222222233444 346899999998332211 12222
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhC--ccccCcEEEEEecccCCC
Q 021699 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g--~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++.. ++... ..++..+..... .....|+++|+||+|+.+
T Consensus 72 -~~a~~~ilv~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~ 124 (201)
T cd04107 72 -RGAVGAIIVFDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLKK 124 (201)
T ss_pred -CCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCccc
Confidence 689999999887542 23222 345555544321 123369999999999864
No 102
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.61 E-value=4.5e-14 Score=116.40 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=73.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++++..... ...+..+.+........++ ..+.+|||||........ ..++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~~~~-- 70 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP-DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLT-------SSYY-- 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-ccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhh-------HHHh--
Confidence 589999999999999999999876422 1222222222222233333 578999999974322111 2222
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+.+|++++|++++.. ++. .-..++..+.+... ....|+++|+||+|+.
T Consensus 71 ~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 71 RGAQGVILVYDVTRRDTFT-NLETWLNELETYST-NNDIVKMLVGNKIDKE 119 (161)
T ss_pred CCCCEEEEEEECCCHHHHH-hHHHHHHHHHHhCC-CCCCcEEEEEECCccc
Confidence 589999999887542 222 22335666655533 2236899999999986
No 103
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.61 E-value=2.3e-14 Score=121.72 Aligned_cols=118 Identities=22% Similarity=0.202 Sum_probs=74.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++++..... ...+..+.+........++ ..+.+|||||..+... ....++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~-------~~~~~~-- 70 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE-STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRS-------LNNSYY-- 70 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHh-------hHHHHc--
Confidence 589999999999999999999876421 1222222222223344444 3678999999632211 112222
Q ss_pred CCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021699 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
.++|++++|++++... +... ..++..+....+.. .|+++|+||+|+.+..
T Consensus 71 ~~~d~iilv~d~~~~~s~~~i-~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~~~ 121 (188)
T cd04125 71 RGAHGYLLVYDVTDQESFENL-KFWINEINRYAREN--VIKVIVANKSDLVNNK 121 (188)
T ss_pred cCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCC--CeEEEEEECCCCcccc
Confidence 5899999998876422 2222 33566665544333 6899999999986443
No 104
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.61 E-value=5.5e-14 Score=120.12 Aligned_cols=113 Identities=15% Similarity=0.179 Sum_probs=73.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccC---------------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 104 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~---------------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~ 104 (309)
-+|+++|.+|+|||||+|+|++........ ..+.+..........++..+.+|||||..+..
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~--- 79 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFG--- 79 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHH---
Confidence 389999999999999999999632111111 12333344444556678899999999984321
Q ss_pred HHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 105 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 105 ~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.....++ .++|++++|++... ........++..+... ..|+++|+||+|+.
T Consensus 80 ----~~~~~~~--~~~d~~ilV~d~~~-~~~~~~~~~~~~~~~~-----~~p~iiv~NK~Dl~ 130 (194)
T cd01891 80 ----GEVERVL--SMVDGVLLLVDASE-GPMPQTRFVLKKALEL-----GLKPIVVINKIDRP 130 (194)
T ss_pred ----HHHHHHH--HhcCEEEEEEECCC-CccHHHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence 1222222 58899999987754 2333334444443321 26899999999985
No 105
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.61 E-value=1.9e-14 Score=119.34 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=72.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~---~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
.|+++|.+|+|||||+|+|++..... ...+++|.......... .+..+.+|||||..+. ......+.
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~-------~~~~~~~~-- 71 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF-------TNMRARGA-- 71 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH-------HHHHHHHH--
Confidence 48999999999999999999876422 22233343333333344 3678999999997321 11111122
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++++. .........+..+.. .+ .|+++|+||+|+.
T Consensus 72 ~~~d~il~v~d~~~-~~~~~~~~~~~~~~~-~~----~p~ivv~NK~Dl~ 115 (168)
T cd01887 72 SLTDIAILVVAADD-GVMPQTIEAIKLAKA-AN----VPFIVALNKIDKP 115 (168)
T ss_pred hhcCEEEEEEECCC-CccHHHHHHHHHHHH-cC----CCEEEEEEceecc
Confidence 58899999977753 223344445554433 22 6999999999985
No 106
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.61 E-value=8.7e-14 Score=115.90 Aligned_cols=121 Identities=18% Similarity=0.162 Sum_probs=76.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+++|+++|.+|+||||++|++.+... .....+++..........++ ..+.+|||||..+.....+. ++
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~- 70 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVF--IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMREL-------YI- 70 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHH-------HH-
Confidence 47999999999999999999997763 22222233222233334444 47889999998544322221 12
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
..+|++++|++++....-.....+.+.+.+.... ...|+++|+||.|+.++..
T Consensus 71 -~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~D~~~~~~ 123 (168)
T cd04177 71 -KSGQGFLLVYSVTSEASLNELGELREQVLRIKDS-DNVPMVLVGNKADLEDDRQ 123 (168)
T ss_pred -hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEEChhccccCc
Confidence 4789999998876432112223455556554332 2379999999999865443
No 107
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.61 E-value=4e-14 Score=120.62 Aligned_cols=116 Identities=18% Similarity=0.144 Sum_probs=73.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCe-eEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPR-PVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~-~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+||+++|.+|+|||||+|++++... ..+...++... ........+|. .+.+|||||........ ..++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-------~~~~- 71 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRF-LVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMS-------RIYY- 71 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCc-CCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhh-------Hhhc-
Confidence 5899999999999999999998763 22233332222 22223455555 56799999984332221 1112
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++...-......+++.+.... . ..|+++|+||+|+.+
T Consensus 72 -~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~--~~piilv~nK~Dl~~ 119 (193)
T cd04118 72 -RGAKAAIVCYDLTDSSSFERAKFWVKELQNLE-E--HCKIYLCGTKSDLIE 119 (193)
T ss_pred -CCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC-C--CCCEEEEEEcccccc
Confidence 58999999988754211112234666665432 2 269999999999853
No 108
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.61 E-value=6.9e-14 Score=120.06 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=74.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||++++++... .....+..+.+.........| ..+.||||||...... ....++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-------~~~~~~ 76 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTF-SGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRT-------ITSTYY 76 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHH-------HHHHHh
Confidence 359999999999999999999998763 111222222222223334444 4688999999733211 111222
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021699 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
..+|++++|+++... .+.. -..+++.+....+ ..|+++|+||+|+.+..
T Consensus 77 --~~a~~iilv~D~~~~~s~~~-~~~~~~~i~~~~~---~~piivVgNK~Dl~~~~ 126 (199)
T cd04110 77 --RGTHGVIVVYDVTNGESFVN-VKRWLQEIEQNCD---DVCKVLVGNKNDDPERK 126 (199)
T ss_pred --CCCcEEEEEEECCCHHHHHH-HHHHHHHHHHhCC---CCCEEEEEECccccccc
Confidence 578999999887532 2222 2345666555432 26899999999986443
No 109
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.61 E-value=5.8e-14 Score=114.34 Aligned_cols=119 Identities=15% Similarity=0.135 Sum_probs=74.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++++...... ..+..+.......... ....+.+|||||... .......++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~-- 70 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-------FRSITPSYY-- 70 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChHH-------HHHHHHHHh--
Confidence 5899999999999999999998875332 1222222222333333 346789999999832 111222233
Q ss_pred CCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021699 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
.++|++++|++++... +. ....++..+....... .|+++|+||+|+..+..
T Consensus 71 ~~~d~ii~v~d~~~~~~~~-~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~~ 122 (159)
T cd00154 71 RGAHGAILVYDITNRESFE-NLDKWLKELKEYAPEN--IPIILVGNKIDLEDQRQ 122 (159)
T ss_pred cCCCEEEEEEECCCHHHHH-HHHHHHHHHHHhCCCC--CcEEEEEEccccccccc
Confidence 5799999998875422 22 2233665665554222 69999999999863333
No 110
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.61 E-value=5.3e-14 Score=114.19 Aligned_cols=118 Identities=25% Similarity=0.401 Sum_probs=78.8
Q ss_pred EEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcE
Q 021699 44 VMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 122 (309)
Q Consensus 44 vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~ 122 (309)
++|.+|+|||||+|+|++......+..++++........... +..+.+|||||+.+................ ..+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~--~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVL--ERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHH--HhCCE
Confidence 589999999999999999876556666666666655555544 678999999999876654442222222223 58999
Q ss_pred EEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 123 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 123 il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
+++|++.... .......+....... ..|+++|+||+|+..+
T Consensus 79 il~v~~~~~~-~~~~~~~~~~~~~~~-----~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 79 ILFVVDADLR-ADEEEEKLLELLRER-----GKPVLLVLNKIDLLPE 119 (163)
T ss_pred EEEEEeCCCC-CCHHHHHHHHHHHhc-----CCeEEEEEEccccCCh
Confidence 9999766532 222222222222221 2799999999998643
No 111
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.60 E-value=1.5e-14 Score=120.01 Aligned_cols=117 Identities=13% Similarity=0.061 Sum_probs=69.7
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccc---cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTV---STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~---~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+|+++|.+|+|||||+|+|++...... .....+|.........+++..+.+|||||..+... ....++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~-- 71 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRS-------LWDKYY-- 71 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHH-------HHHHHh--
Confidence 589999999999999999987532100 11112233333344566788999999999843211 112222
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++............++..+.+... ....|+++|+||+|+.
T Consensus 72 ~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 72 AECHAIIYVIDSTDRERFEESKSALEKVLRNEA-LEGVPLLILANKQDLP 120 (167)
T ss_pred CCCCEEEEEEECchHHHHHHHHHHHHHHHhChh-hcCCCEEEEEEccccc
Confidence 689999999776432100111223333322111 1227999999999974
No 112
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.60 E-value=5.7e-14 Score=117.60 Aligned_cols=118 Identities=19% Similarity=0.164 Sum_probs=73.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
||+++|.+|+|||||+|++++... .....+..+..........+| ..+.+|||||....... ...++ .
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~~~~~--~ 71 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCI-------ASTYY--R 71 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhh-------HHHHh--c
Confidence 799999999999999999998753 222222222233333344454 46899999998332111 11122 6
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
++|++++|++++..........++..+.+..... ..|+++|+||+|+.+.
T Consensus 72 ~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~iilVgnK~Dl~~~ 121 (170)
T cd04108 72 GAQAIIIVFDLTDVASLEHTRQWLEDALKENDPS-SVLLFLVGTKKDLSSP 121 (170)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEChhcCcc
Confidence 8999999988754221123345666654432221 1478999999998543
No 113
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.60 E-value=9.7e-14 Score=115.45 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=73.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++.+.... ...+.+ .......... .+..+.+|||||..+.. .. ...++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~~----~~~~~-- 68 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQDR---AN----LAAEI-- 68 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--ccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhhh---HH----Hhhhc--
Confidence 48999999999999999999987632 222222 2222222223 44578999999984321 11 22222
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
..+|++++|++++.. .+......++..+..... ..|+++|+||+|+.+.
T Consensus 69 ~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~pviiv~nK~Dl~~~ 118 (166)
T cd01893 69 RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV---KVPIILVGNKSDLRDG 118 (166)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhcccc
Confidence 589999999887542 122222346666655432 2799999999998643
No 114
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.60 E-value=1.2e-13 Score=113.83 Aligned_cols=116 Identities=19% Similarity=0.223 Sum_probs=72.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++++... .....+++..........++ ..+.+|||||..+.... ...++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~-- 69 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAI-------RDNYH-- 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--ccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHH-------HHHHh--
Confidence 5899999999999999999997653 23333333333333334443 46899999998433211 11122
Q ss_pred CCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
...|++++|++++... +.. -..++..+..... ....|+++|+||+|+..
T Consensus 70 ~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 70 RSGEGFLLVFSITDMESFTA-TAEFREQILRVKD-DDNVPLLLVGNKCDLED 119 (164)
T ss_pred hcCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence 5779999997775322 212 2334444444322 22379999999999864
No 115
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.60 E-value=7.1e-14 Score=116.45 Aligned_cols=114 Identities=12% Similarity=0.100 Sum_probs=73.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|+++.... .....+............. ....+.+|||||........+.. .
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~-------~-- 70 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGY-------Y-- 70 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHH-------h--
Confidence 5899999999999999999996542 1111111111222222222 34578999999985543332221 1
Q ss_pred CCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++++... +. .-..+++.+.+..+ ..|+++|+||+|+.
T Consensus 71 ~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~---~~piiiv~nK~Dl~ 117 (166)
T cd00877 71 IGGQCAIIMFDVTSRVTYK-NVPNWHRDLVRVCG---NIPIVLCGNKVDIK 117 (166)
T ss_pred cCCCEEEEEEECCCHHHHH-HHHHHHHHHHHhCC---CCcEEEEEEchhcc
Confidence 5899999998876422 21 22346667766654 37999999999985
No 116
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.59 E-value=1.4e-13 Score=120.05 Aligned_cols=113 Identities=15% Similarity=0.188 Sum_probs=73.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
+||+++|.+|+|||||++++++.... ...+ |.........+....+.||||||......... .++ .+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~--~~~~--Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~-------~~~--~~ 67 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK--DTVS--TVGGAFYLKQWGPYNISIWDTAGREQFHGLGS-------MYC--RG 67 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC--CCCC--ccceEEEEEEeeEEEEEEEeCCCcccchhhHH-------HHh--cc
Confidence 58999999999999999999987642 1222 22222223334566899999999854322211 122 68
Q ss_pred CcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 120 IDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 120 ~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+|++|+|++++.. ++..... ++..+.+..... .|+|+|+||+|+..
T Consensus 68 ad~~IlV~Dvt~~~Sf~~l~~-~~~~l~~~~~~~--~piIlVgNK~DL~~ 114 (220)
T cd04126 68 AAAVILTYDVSNVQSLEELED-RFLGLTDTANED--CLFAVVGNKLDLTE 114 (220)
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCC--CcEEEEEECccccc
Confidence 9999999888643 2433332 333344433332 68999999999864
No 117
>PLN03110 Rab GTPase; Provisional
Probab=99.59 E-value=1.8e-13 Score=119.08 Aligned_cols=122 Identities=15% Similarity=0.160 Sum_probs=78.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..+||+++|.+|+|||||++++++.... ....+..+.+.....+.+++ ..+.||||||... +......++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~-~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~ 82 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-------YRAITSAYY 82 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHh
Confidence 3589999999999999999999987642 22222222333333444555 4789999999632 112222233
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
..+|++++|++++.....+.-..++..+......+ .|+++|+||+|+.....
T Consensus 83 --~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~~~ 134 (216)
T PLN03110 83 --RGAVGALLVYDITKRQTFDNVQRWLRELRDHADSN--IVIMMAGNKSDLNHLRS 134 (216)
T ss_pred --CCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCC--CeEEEEEEChhcccccC
Confidence 58999999988754221122345666666554333 68999999999864443
No 118
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.59 E-value=5.2e-14 Score=117.64 Aligned_cols=113 Identities=18% Similarity=0.145 Sum_probs=73.0
Q ss_pred EEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021699 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
|+|+|.+|+|||||+|++++... .. ....+...........++. .+.+|||||..+....... + ..+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~--~~~ 69 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF-PE-DYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPL-------S--YPD 69 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC-CC-CCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchh-------h--cCC
Confidence 68999999999999999998763 22 1222222222223344554 5899999998543222111 1 158
Q ss_pred CcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 120 IDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 120 ~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+|++++|++++.. ++......++..+.+... ..|+++|+||+|+.+
T Consensus 70 ~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 116 (174)
T smart00174 70 TDVFLICFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLRE 116 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEecChhhhh
Confidence 9999999888642 243333456666665543 279999999999863
No 119
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.59 E-value=5.9e-14 Score=118.86 Aligned_cols=117 Identities=20% Similarity=0.231 Sum_probs=71.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~---~g~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
..++|+++|.+|+|||||+|++.+.... ...+..+.......... .+..+.+|||||.... . .....+
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---~----~~~~~~ 72 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL---R----PLWKSY 72 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcC--CcCCccccceeEEEeeccCCCceEEEEEECCCcHhH---H----HHHHHH
Confidence 4689999999999999999999986532 22332222222222322 4568999999997321 1 111122
Q ss_pred hhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 115 LLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+ .++|++++|++.+.. ++... ..++..+.+.... ...|+++|+||+|+.
T Consensus 73 ~--~~~d~ii~v~D~~~~~~~~~~-~~~~~~i~~~~~~-~~~p~iiv~NK~D~~ 122 (183)
T cd04152 73 T--RCTDGIVFVVDSVDVERMEEA-KTELHKITRFSEN-QGVPVLVLANKQDLP 122 (183)
T ss_pred h--ccCCEEEEEEECCCHHHHHHH-HHHHHHHHhhhhc-CCCcEEEEEECcCcc
Confidence 2 589999999776532 12111 2233333332221 237999999999984
No 120
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.59 E-value=1e-13 Score=115.02 Aligned_cols=119 Identities=20% Similarity=0.187 Sum_probs=73.5
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
+|+++|.+|+|||||++++++... .....+++..........++. .+.+|||||....... .....+ .
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--~~~~~~------~ 70 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTE--QLERSI------R 70 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccc--hHHHHH------H
Confidence 589999999999999999997542 233333332222333444554 5789999998642111 111222 4
Q ss_pred CCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021699 119 TIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 119 ~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
.+|++++|++++.. ++. .-..++..+.+........|+++|+||+|+....
T Consensus 71 ~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 122 (165)
T cd04146 71 WADGFVLVYSITDRSSFD-EISQLKQLIREIKKRDREIPVILVGNKADLLHYR 122 (165)
T ss_pred hCCEEEEEEECCCHHHHH-HHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhC
Confidence 78999999887642 222 2234555555543212237999999999985433
No 121
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.59 E-value=1.6e-13 Score=115.58 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=77.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+.++..... . ....++...........++ .++.||||+|..+....... ++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f-~-~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~-------~~-- 70 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF-P-TDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPL-------SY-- 70 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC-C-CCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchh-------hc--
Confidence 6899999999999999999998753 2 2222222222233344455 47899999998554433222 11
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++|+|++++.. ++......|+..+.+..+ + .|+++|+||+|+.+
T Consensus 71 ~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgnK~Dl~~ 119 (176)
T cd04133 71 RGADVFVLAFSLISRASYENVLKKWVPELRHYAP-N--VPIVLVGTKLDLRD 119 (176)
T ss_pred CCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEeChhhcc
Confidence 689999999998653 243333467777765533 2 69999999999954
No 122
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=5.6e-14 Score=116.66 Aligned_cols=126 Identities=19% Similarity=0.190 Sum_probs=92.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
-|||+|+|.+|||||.|+-++.+... ..+.....+.+....+.+++|. ++.||||+|...+... +..+.
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f-~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrti-------t~syY- 79 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTF-TESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTI-------TSSYY- 79 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCc-chhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhh-------hHhhc-
Confidence 58999999999999999999988753 3333334455666666777776 6899999999443322 22222
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
+++|+||+|++++...-...-..|++++.+..... .|.++|+||+|+.+....+.++
T Consensus 80 -R~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~--v~~lLVGNK~Dl~~~~~v~~~~ 136 (205)
T KOG0084|consen 80 -RGAHGIIFVYDITKQESFNNVKRWIQEIDRYASEN--VPKLLVGNKCDLTEKRVVSTEE 136 (205)
T ss_pred -cCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCC--CCeEEEeeccccHhheecCHHH
Confidence 69999999999976443345567899998887665 6999999999997665555554
No 123
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.59 E-value=2.8e-13 Score=112.01 Aligned_cols=119 Identities=15% Similarity=0.105 Sum_probs=72.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCC-CeeEEEEeee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSR---AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~---~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
+||+++|.+|+|||||++++.+...........+. .+........ ....+.+|||||... .......++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~ 73 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL-------YSDMVSNYW 73 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH-------HHHHHHHHh
Confidence 58999999999999999999864211222222222 2222222222 235899999999621 112223333
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
..+|++++|++++....-..-..+++.+.... ...|+++|+||+|+.+..
T Consensus 74 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~ 123 (164)
T cd04101 74 --ESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADKA 123 (164)
T ss_pred --CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccccc
Confidence 68999999988764211112234555555442 226999999999986443
No 124
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.59 E-value=1.8e-13 Score=120.49 Aligned_cols=87 Identities=22% Similarity=0.296 Sum_probs=64.6
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
+|+++|.+|+|||||+|+|+|... .++..+.+|..+......+++..+.+|||||+.+...........+... .+.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~--~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAV--ARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHh--hccC
Confidence 689999999999999999999864 5667778888887777788999999999999865432221111111112 2689
Q ss_pred cEEEEEEeCC
Q 021699 121 DVLLYVDRLD 130 (309)
Q Consensus 121 d~il~v~~~d 130 (309)
|++++|++.+
T Consensus 79 d~il~V~D~t 88 (233)
T cd01896 79 DLILMVLDAT 88 (233)
T ss_pred CEEEEEecCC
Confidence 9999996653
No 125
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.58 E-value=1.3e-13 Score=115.19 Aligned_cols=114 Identities=20% Similarity=0.174 Sum_probs=74.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|++.+... .....++...........++. .+.+|||||..+....... ..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---------~~ 69 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPL---------SY 69 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccc---------cC
Confidence 5899999999999999999998763 222222222222333445554 4789999998554332211 12
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++++.. ++......++..+... .. ..|+++|+||+|+.
T Consensus 70 ~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~--~~piivv~nK~Dl~ 117 (174)
T cd04135 70 PMTDVFLICFSVVNPASFQNVKEEWVPELKEY-AP--NVPYLLVGTQIDLR 117 (174)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CC--CCCEEEEeEchhhh
Confidence 588999999887543 2333334566666544 22 27999999999985
No 126
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.58 E-value=1.5e-13 Score=114.16 Aligned_cols=119 Identities=16% Similarity=0.181 Sum_probs=74.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
-++|+++|.+|+|||||++++++... .....+..+.+.......+.+. .+.+|||||..+.. .....++
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~- 77 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFR-------SITQSYY- 77 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHh-
Confidence 48999999999999999999997643 2222222223344444556663 57889999973221 1112223
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021699 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
..+|++++|++++.. ++. .-..++..+....... .|+++|+||+|+.+.+
T Consensus 78 -~~~d~~i~v~d~~~~~s~~-~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~~~~ 128 (169)
T cd04114 78 -RSANALILTYDITCEESFR-CLPEWLREIEQYANNK--VITILVGNKIDLAERR 128 (169)
T ss_pred -cCCCEEEEEEECcCHHHHH-HHHHHHHHHHHhCCCC--CeEEEEEECccccccc
Confidence 589999999877532 121 1134555555544322 6889999999986443
No 127
>CHL00071 tufA elongation factor Tu
Probab=99.58 E-value=9.1e-14 Score=132.09 Aligned_cols=151 Identities=14% Similarity=0.055 Sum_probs=95.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccc---------------cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTV---------------STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~---------------~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
...++|+++|++++|||||+|+|++...... ....+.|.+.....++.++..+.++||||..
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~--- 86 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA--- 86 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH---
Confidence 4579999999999999999999997522110 0113344444444555677889999999973
Q ss_pred CCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCc-EEEEEecccCCCCCCCCHHHHHHh
Q 021699 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLSLPDRLDYEVFCSK 180 (309)
Q Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~-~iiV~tk~D~~~~~~~~~~~~~~~ 180 (309)
.+...+...+ ..+|++++|++.+. .+...+.+.+..+... | .| +|+++||+|+.+. ++..+.
T Consensus 87 ----~~~~~~~~~~--~~~D~~ilVvda~~-g~~~qt~~~~~~~~~~-g----~~~iIvvvNK~D~~~~-----~~~~~~ 149 (409)
T CHL00071 87 ----DYVKNMITGA--AQMDGAILVVSAAD-GPMPQTKEHILLAKQV-G----VPNIVVFLNKEDQVDD-----EELLEL 149 (409)
T ss_pred ----HHHHHHHHHH--HhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-C----CCEEEEEEEccCCCCH-----HHHHHH
Confidence 2222222222 48899999977653 4667777777666543 3 45 7889999998632 222222
Q ss_pred hhHHHHHhhcccccccccccccCCCcEEEeccc
Q 021699 181 RSEALLKFVSPSTWMKKKDIQGSFVPVVLVENS 213 (309)
Q Consensus 181 ~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~ 213 (309)
..+.+.++++... +. ...+|++++++.
T Consensus 150 ~~~~l~~~l~~~~-~~-----~~~~~ii~~Sa~ 176 (409)
T CHL00071 150 VELEVRELLSKYD-FP-----GDDIPIVSGSAL 176 (409)
T ss_pred HHHHHHHHHHHhC-CC-----CCcceEEEcchh
Confidence 2345666665431 11 123788888764
No 128
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.58 E-value=1.2e-13 Score=119.73 Aligned_cols=121 Identities=16% Similarity=0.162 Sum_probs=75.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.+||+++|.+|+|||||+|++++....... .++.+.+.....+.. ++ ..+.+|||||..... .....++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~-~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~ 73 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVS-DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFR-------SITRSYY 73 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CceeceEEEEEEEEECCCCEEEEEEEeCCcchhHH-------HHHHHHh
Confidence 489999999999999999999987642222 222223333333333 23 478999999973221 1112222
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021699 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
.++|++++|++++.. ++.. -..+++.+.+..... ..++++|+||+|+.....
T Consensus 74 --~~~d~iilv~D~~~~~Sf~~-l~~~~~~i~~~~~~~-~~~iilvgNK~Dl~~~~~ 126 (211)
T cd04111 74 --RNSVGVLLVFDITNRESFEH-VHDWLEEARSHIQPH-RPVFILVGHKCDLESQRQ 126 (211)
T ss_pred --cCCcEEEEEEECCCHHHHHH-HHHHHHHHHHhcCCC-CCeEEEEEEccccccccc
Confidence 588999999888642 2322 234566555544322 256889999999865433
No 129
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.58 E-value=9e-14 Score=117.78 Aligned_cols=115 Identities=20% Similarity=0.228 Sum_probs=70.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-C--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-G--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+||+|+|.+|+|||||+|++++... . ....++............ + ..+.+|||||..+.. .+... .
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~-~-~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~-~ 69 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKF-P-EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYD--------RLRPL-S 69 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC-C-CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHH--------HHHHH-h
Confidence 5899999999999999999998763 2 222222212222222332 2 368999999973221 11111 1
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..++|++++|++++.. ++......++..+... .. ..|+++|+||+|+.+
T Consensus 70 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~--~~piilv~nK~Dl~~ 119 (187)
T cd04132 70 YPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-CP--GTPIMLVGLKTDLRK 119 (187)
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CC--CCCEEEEEeChhhhh
Confidence 2689999999887642 2322223355555433 22 269999999999853
No 130
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.58 E-value=1.6e-13 Score=115.85 Aligned_cols=114 Identities=18% Similarity=0.124 Sum_probs=75.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||++++.+... . ....++..........+++ ..+.||||||......... . ..
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f-~-~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~-------~--~~ 70 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY-P-ETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRP-------L--CY 70 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-C-CCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcch-------h--hc
Confidence 7999999999999999999998753 2 2222222222222344454 4688999999743322111 1 12
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+++|++|+|++++.. ++......|+..+.+..+. .|+++|+||+|+.
T Consensus 71 ~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~---~~iilVgnK~DL~ 118 (178)
T cd04131 71 PDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPN---TKVLLVGCKTDLR 118 (178)
T ss_pred CCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCC---CCEEEEEEChhhh
Confidence 689999999988642 2433234677777766432 6999999999985
No 131
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.58 E-value=7.4e-14 Score=116.66 Aligned_cols=115 Identities=18% Similarity=0.247 Sum_probs=71.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+.++|+++|.+|+|||||++++...... ...++.+... ......+..+.+|||||.... . .....++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~t~g~~~--~~~~~~~~~~~l~Dt~G~~~~---~----~~~~~~~-- 74 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV--TTIPTVGFNV--ETVTYKNVKFNVWDVGGQDKI---R----PLWRHYY-- 74 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc--cccCCcccce--EEEEECCEEEEEEECCCCHHH---H----HHHHHHh--
Confidence 4699999999999999999999876532 2222222222 233456789999999998321 1 1111222
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|+++... ++......+.+.+.....+ ..|+++|+||+|+.
T Consensus 75 ~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~ 123 (168)
T cd04149 75 TGTQGLIFVVDSADRDRIDEARQELHRIINDREMR--DALLLVFANKQDLP 123 (168)
T ss_pred ccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhc--CCcEEEEEECcCCc
Confidence 589999999887542 2322222222222211111 26999999999985
No 132
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.58 E-value=1.6e-13 Score=115.35 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=74.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.++|+++|.+|+|||||+.++++... .....++...........++ ..+.||||||..+...... .++
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~~- 70 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRP-------LSY- 70 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCC--CCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhh-------hhc-
Confidence 37999999999999999999997652 22222222222222334455 4688999999743322111 122
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++|+|++++.. ++......++..+..... ..|+++|+||+|+.
T Consensus 71 -~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilvgnK~Dl~ 118 (174)
T cd01871 71 -PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR 118 (174)
T ss_pred -CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhc
Confidence 589999999888642 233333346666655432 26999999999985
No 133
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.58 E-value=1.4e-13 Score=114.74 Aligned_cols=119 Identities=22% Similarity=0.232 Sum_probs=74.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..+||+++|.+|+|||||++++++... .....+..+..........++ ..+.||||||..... .....++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~~~~~ 75 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFR-------SLRTPFY 75 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCC-CcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHH-------HhHHHHh
Confidence 358999999999999999999998653 222222222232233344444 367899999973211 1112222
Q ss_pred hcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCc--cccCcEEEEEecccCC
Q 021699 116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~--~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++++... +.. -..+...+...... ....|+++|+||+|+.
T Consensus 76 --~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 76 --RGSDCCLLTFAVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred --cCCCEEEEEEECCCHHHHHh-HHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 5889999998887532 322 23455555444321 1236899999999985
No 134
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.58 E-value=3.3e-13 Score=112.77 Aligned_cols=117 Identities=17% Similarity=0.126 Sum_probs=72.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCC-CCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
+.+||+++|.+|+|||||++++++... .+....++ +..........+| ..+.++||+|..........+ +
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f-~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~---~--- 75 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSF-SLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAE---L--- 75 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCC-CcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhh---h---
Confidence 568999999999999999999998764 21233333 2222223344555 468899999985543322221 1
Q ss_pred hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++.. .....+...+.. +......|+++|+||+|+.+
T Consensus 76 ---~~~d~~llv~d~~~~---~s~~~~~~~~~~-~~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 76 ---AACDVACLVYDSSDP---KSFSYCAEVYKK-YFMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred ---hcCCEEEEEEeCCCH---HHHHHHHHHHHH-hccCCCCeEEEEEEcccccc
Confidence 589999999776432 111112222222 21112379999999999853
No 135
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.58 E-value=1.6e-14 Score=120.07 Aligned_cols=117 Identities=20% Similarity=0.154 Sum_probs=76.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||+|+|++... ..... ++............ ...+.+|||||..+....... + .
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~-------~--~ 69 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF-PTEYV-PTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPL-------S--Y 69 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCC-CceeeeeEEEEEECCEEEEEEEEeCCCcccccccchh-------h--c
Confidence 6899999999999999999998864 11111 11112122222333 347899999998654222211 1 1
Q ss_pred CCCcEEEEEEeCCc-cccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021699 118 KTIDVLLYVDRLDV-YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 118 ~~~d~il~v~~~d~-~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
..+|++++|++++. .++......++..+..... ..|+++|+||+|+.++.
T Consensus 70 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 70 PNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDDE 120 (171)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhch
Confidence 57899999988864 2344445556666665443 37999999999986443
No 136
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.58 E-value=1.4e-13 Score=122.13 Aligned_cols=123 Identities=21% Similarity=0.243 Sum_probs=76.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||++++++... . ....++..+.....+.++| ..+.||||+|..+... ++.. ..
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f-~-~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~--------~~~~-~~ 69 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRF-E-EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPA--------MRRL-SI 69 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCC-C-CCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhH--------HHHH-Hh
Confidence 4899999999999999999997653 2 2223333333333445555 4688999999843221 1111 11
Q ss_pred CCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhC-------ccccCcEEEEEecccCCCCCCCCH
Q 021699 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFG-------EQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g-------~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
..+|++|+|++++... + +.-..+++.+.+... .....|+|+|+||+|+......+.
T Consensus 70 ~~ad~iIlVfdv~~~~Sf-~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~ 133 (247)
T cd04143 70 LTGDVFILVFSLDNRESF-EEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQR 133 (247)
T ss_pred ccCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCH
Confidence 5889999998887532 2 222445555544311 112379999999999864344333
No 137
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.57 E-value=8.9e-14 Score=114.00 Aligned_cols=116 Identities=20% Similarity=0.204 Sum_probs=75.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
||+++|.+|+|||||+|++++.. ......+++..........++ ..+.+|||||..+.. .....++ .
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~--~ 69 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFS-------AMRDLYI--R 69 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHH--h
Confidence 68999999999999999999876 333344444444444455553 478999999974311 1112222 4
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.+|++++|++++.......-..+...+....+. ...|+++|+||+|+..
T Consensus 70 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 70 QGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLEN 118 (160)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccc
Confidence 789999998876422112223444455544331 2379999999999864
No 138
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.57 E-value=1.9e-13 Score=115.73 Aligned_cols=114 Identities=19% Similarity=0.127 Sum_probs=71.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||++++++... .....+..+..........++ ..+.||||+|....... ...+ .
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f-~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~-------~~~~--~ 70 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEF-DEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINM-------LPLV--C 70 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHh-------hHHH--C
Confidence 5899999999999999999998753 222222222233333445555 46899999998432111 1112 2
Q ss_pred CCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++++... +. .-..++..+.+..... .| ++|+||+|+.
T Consensus 71 ~~a~~iilv~D~t~~~s~~-~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~ 117 (182)
T cd04128 71 NDAVAILFMFDLTRKSTLN-SIKEWYRQARGFNKTA--IP-ILVGTKYDLF 117 (182)
T ss_pred cCCCEEEEEEECcCHHHHH-HHHHHHHHHHHhCCCC--CE-EEEEEchhcc
Confidence 6899999998875422 22 2235666665543322 34 6889999985
No 139
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.57 E-value=4.7e-13 Score=116.89 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=73.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCC-CeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~--~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+||+++|.+|+|||||++++++.... ......+. .+.......+ ....+.+|||||.. . . +... .
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~------~-~---~~~~-~ 68 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE------M-W---TEDS-C 68 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc------h-H---HHhH-H
Confidence 58999999999999999999866532 11221211 1222233334 34578999999984 1 1 1111 1
Q ss_pred cC-CCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021699 117 NK-TIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 117 ~~-~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
.. ++|++++|++++... + ..-.+++..+.+.. .....|+|+|+||+|+.+...
T Consensus 69 ~~~~ad~iilV~d~td~~S~-~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~~~~ 123 (221)
T cd04148 69 MQYQGDAFVVVYSVTDRSSF-ERASELRIQLRRNR-QLEDRPIILVGNKSDLARSRE 123 (221)
T ss_pred hhcCCCEEEEEEECCCHHHH-HHHHHHHHHHHHhc-CCCCCCEEEEEEChhccccce
Confidence 13 899999998886432 2 22244555555542 122379999999999865443
No 140
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.57 E-value=2e-13 Score=114.01 Aligned_cols=112 Identities=11% Similarity=0.067 Sum_probs=71.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
||+++|.+|+|||||+|++.+... ... .+|...........+..+.+|||||..+.... ....+ .++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~~--~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~---~~~~~------~~a 67 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQP--IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPL---WKHYY------LNT 67 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CCc--CCcCceeEEEEEECCEEEEEEECCCChhcchH---HHHHh------ccC
Confidence 689999999999999999998742 222 22332223345667889999999998533211 11112 589
Q ss_pred cEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 121 DVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 121 d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
|+++||++.+.. +++.. ..++..+.+..+ ....|+++|+||+|+.
T Consensus 68 d~ii~V~D~s~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 113 (169)
T cd04158 68 QAVVFVVDSSHRDRVSEA-HSELAKLLTEKE-LRDALLLIFANKQDVA 113 (169)
T ss_pred CEEEEEEeCCcHHHHHHH-HHHHHHHhcChh-hCCCCEEEEEeCcCcc
Confidence 999999887542 23322 233333332211 1126899999999984
No 141
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.57 E-value=8e-14 Score=118.67 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=74.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
.||+++|.+|+|||||++++++..... ...++...........++ ..+.||||||..+....... + .
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~-------~--~ 69 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQ--VYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSL-------S--Y 69 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--ccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccc-------c--c
Confidence 379999999999999999999876422 121221112222233344 47899999998543222111 1 1
Q ss_pred CCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|++++|++++... +...+..++..+..... ..|+++|+||+|+..
T Consensus 70 ~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~---~~piilvgNK~Dl~~ 118 (189)
T cd04134 70 ADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP---GVKLVLVALKCDLRE 118 (189)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 5899999999887532 43333456777765432 269999999999854
No 142
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.57 E-value=1.6e-13 Score=114.99 Aligned_cols=115 Identities=21% Similarity=0.181 Sum_probs=75.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||++++.+... .....+++.+........++ ..+.+|||||.......... ..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---------~~ 69 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY--PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPL---------CY 69 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcccccc---------cc
Confidence 5899999999999999999987652 23333333333333444555 46789999998443222111 12
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++.. ++......++..+..... ..|+++|+||+|+.+
T Consensus 70 ~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 118 (173)
T cd04130 70 PDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP---KAPIILVGTQADLRT 118 (173)
T ss_pred CCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhhcc
Confidence 589999999887643 243333456666654322 269999999999853
No 143
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.56 E-value=2e-13 Score=114.84 Aligned_cols=114 Identities=15% Similarity=0.221 Sum_probs=71.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+.++|+++|.+|+|||||++++..... ....++.+.. .......+..+.+|||||..... .....++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~--~~~~~t~~~~--~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~-- 78 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGES--VTTIPTIGFN--VETVTYKNISFTVWDVGGQDKIR-------PLWRHYY-- 78 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCC--CCcCCccccc--eEEEEECCEEEEEEECCCChhhH-------HHHHHHh--
Confidence 469999999999999999999975432 2222222222 22344577899999999983321 1112222
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHH-HHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAIT-DNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~-~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++++.. ++... .+++..+. ..... ..|+++|+||+|+.
T Consensus 79 ~~ad~ii~v~D~t~~~s~~~~-~~~l~~~~~~~~~~--~~piilv~NK~Dl~ 127 (175)
T smart00177 79 TNTQGLIFVVDSNDRDRIDEA-REELHRMLNEDELR--DAVILVFANKQDLP 127 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHH-HHHHHHHhhCHhhc--CCcEEEEEeCcCcc
Confidence 689999999877532 23222 22333332 21111 26899999999984
No 144
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.56 E-value=2.2e-13 Score=119.55 Aligned_cols=117 Identities=17% Similarity=0.163 Sum_probs=76.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+++|.+|||||||++++.+... . ....++........+..++ ..+.||||+|..... .+..
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F-~-~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~--------~~~~- 79 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCY-P-ETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYD--------NVRP- 79 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCC-C-CCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhH--------HHHH-
Confidence 3468999999999999999999998753 2 2222222222222344444 468999999973321 1111
Q ss_pred hhcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
....++|++++|++++... +......|+..+.+... . .|+++|+||+|+.
T Consensus 80 ~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~ 130 (232)
T cd04174 80 LCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP-S--TRILLIGCKTDLR 130 (232)
T ss_pred HHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccc
Confidence 1126999999999986432 32223457777776543 2 6899999999984
No 145
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.56 E-value=1.5e-13 Score=112.94 Aligned_cols=113 Identities=16% Similarity=0.160 Sum_probs=71.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
||+++|.+|+|||||+|++++...... . .|.........+.+..+.+|||||...... ....++ ..+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~--~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~--~~~ 67 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTT--I--PTIGFNVETVEYKNVSFTVWDVGGQDKIRP-------LWKHYY--ENT 67 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCC--C--CCcCcceEEEEECCEEEEEEECCCChhhHH-------HHHHHh--ccC
Confidence 689999999999999999999863211 1 122222334556778999999999843211 112222 578
Q ss_pred cEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 121 DVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 121 d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
|++++|+++... ++... ..++..+..... ....|+++|+||+|+..
T Consensus 68 ~~~i~v~D~~~~~~~~~~-~~~~~~~~~~~~-~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 68 NGIIFVVDSSDRERIEEA-KEELHKLLNEEE-LKGVPLLIFANKQDLPG 114 (158)
T ss_pred CEEEEEEECCCHHHHHHH-HHHHHHHHhCcc-cCCCcEEEEeeccCCcc
Confidence 999999777542 22222 223333323211 12379999999999863
No 146
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.56 E-value=3.8e-13 Score=112.31 Aligned_cols=123 Identities=12% Similarity=0.102 Sum_probs=74.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.++|+++|.+|+|||||++++++... .....+..+...........+ ..+.+|||||..+.. .. ....+.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~~---~~~~~~- 73 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRF-PERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR---KS---MVQHYY- 73 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH---Hh---hHHHhh-
Confidence 37999999999999999999998653 111112222222223344455 578999999973211 01 112222
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
.++|++++|++++.......-..++..+..... ....|+++|+||+|+.....
T Consensus 74 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~ 126 (170)
T cd04115 74 -RNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLREQIQ 126 (170)
T ss_pred -cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchhhcC
Confidence 689999999887642211222345555554422 12379999999999864433
No 147
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.56 E-value=2.1e-13 Score=114.69 Aligned_cols=119 Identities=22% Similarity=0.209 Sum_probs=73.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
.||+++|.+|+|||||+|++++... .....+++..........++ ..+.+|||||..+...... .+.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~-------~~~-- 70 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQ-------KYS-- 70 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--ccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHH-------HHH--
Confidence 6899999999999999999998753 22222333322233344444 4578999999853221111 111
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
..+|++++|++++....-.....+...+.+..+. ...|+++|+||+|+..++
T Consensus 71 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~ 122 (180)
T cd04137 71 IGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHTQR 122 (180)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhhcC
Confidence 4789999998776422112223344445444332 236899999999986433
No 148
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.56 E-value=2.9e-13 Score=114.71 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=76.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..+||+++|.+|+|||||++++.+... .....++...........++. .+.||||+|...... ++. .
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f--~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~--------~~~-~ 72 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN--------VRP-L 72 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC--CCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHh--------hhh-h
Confidence 358999999999999999999998753 222222222222233444544 689999999843221 211 1
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
...++|++++|++++.. ++......|++.+.+... . .|+++|+||+|+.
T Consensus 73 ~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~ 122 (182)
T cd04172 73 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLR 122 (182)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEeEChhhh
Confidence 12689999999998643 233333467777776543 2 6999999999984
No 149
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.56 E-value=1.2e-13 Score=113.70 Aligned_cols=115 Identities=18% Similarity=0.212 Sum_probs=69.5
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
+|+++|.+|+|||||+|++.+.........+..+. ........+..+.+|||||..+.. .....++ .++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~--~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~--~~~ 69 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGF--NVESFEKGNLSFTAFDMSGQGKYR-------GLWEHYY--KNI 69 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCcccc--ceEEEEECCEEEEEEECCCCHhhH-------HHHHHHH--ccC
Confidence 58999999999999999999864211111122221 122334567889999999984321 1112222 589
Q ss_pred cEEEEEEeCCcc-ccChhHHHHHHHHHHHhC-ccccCcEEEEEecccCC
Q 021699 121 DVLLYVDRLDVY-RVDNLDKQITRAITDNFG-EQIWKRALIVLTHAQLS 167 (309)
Q Consensus 121 d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g-~~~~~~~iiV~tk~D~~ 167 (309)
|++++|++.... ++. ....++..+.+... .....|+++|+||+|+.
T Consensus 70 d~ii~v~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 117 (162)
T cd04157 70 QGIIFVIDSSDRLRLV-VVKDELELLLNHPDIKHRRVPILFFANKMDLP 117 (162)
T ss_pred CEEEEEEeCCcHHHHH-HHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence 999999776432 121 11233333333211 11237999999999985
No 150
>PLN03108 Rab family protein; Provisional
Probab=99.55 E-value=3.8e-13 Score=116.49 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=76.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+|+|.+|+|||||+|++++...... ..+..+.........+++. .+.+|||||..... .....++
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~-~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~-------~~~~~~~- 76 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-------SITRSYY- 76 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHh-
Confidence 48999999999999999999998754222 2222223322333445553 57899999973211 1111222
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++..........++..+...... ..|+++|+||+|+......+.+
T Consensus 77 -~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~~~~~~~ 132 (210)
T PLN03108 77 -RGAAGALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNKCDLAHRRAVSTE 132 (210)
T ss_pred -ccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccccCCCHH
Confidence 5789999998875432112223455555544333 2689999999998644333333
No 151
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.55 E-value=6.4e-13 Score=109.41 Aligned_cols=119 Identities=21% Similarity=0.224 Sum_probs=75.5
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC---cHHHHHHHHHhhh
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV---NYHAIQLIKRFLL 116 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~---~~~~~~~i~~~~~ 116 (309)
.|+++|.+|+|||||+|+|++.. ....+...++|..... ...++ .+.++||||+.+.... .++....+..++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 37999999999999999999543 2233334444443322 22233 8999999999764331 1223333344443
Q ss_pred c-CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 117 N-KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~-~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
. ..+++++++++.+. ..+..+..+++.+... + .|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~v~d~~~-~~~~~~~~~~~~l~~~-~----~~vi~v~nK~D~~~ 124 (170)
T cd01876 78 NRENLKGVVLLIDSRH-GPTEIDLEMLDWLEEL-G----IPFLVVLTKADKLK 124 (170)
T ss_pred hChhhhEEEEEEEcCc-CCCHhHHHHHHHHHHc-C----CCEEEEEEchhcCC
Confidence 2 36788888866543 2345556666666543 2 68999999999863
No 152
>PRK09866 hypothetical protein; Provisional
Probab=99.55 E-value=6.5e-13 Score=128.64 Aligned_cols=48 Identities=21% Similarity=0.350 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccc
Q 021699 20 ATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTV 67 (309)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~ 67 (309)
.+..++.++.+.+.+.....+.++++|.+|+|||||+|+|+|..+..+
T Consensus 50 ~i~~ri~~L~~~L~Kv~~~~~~valvG~sgaGKSTLiNaL~G~~Vlpt 97 (741)
T PRK09866 50 NIAERHAMLNNELRKISRLEMVLAIVGTMKAGKSTTINAIVGTEVLPN 97 (741)
T ss_pred HHHHHHHHHHHHHHHHhccceEEEEECCCCCCHHHHHHHHhCCccccC
Confidence 466677777777777666779999999999999999999999876555
No 153
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.55 E-value=7.4e-14 Score=118.41 Aligned_cols=115 Identities=14% Similarity=0.170 Sum_probs=73.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
..++|+++|.+|+|||||+|++.+...... .+|..+......+++.++.++||||.... ......++
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~-- 82 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH----QPTQHPTSEELAIGNIKFTTFDLGGHQQA-------RRLWKDYF-- 82 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCccc----CCccccceEEEEECCEEEEEEECCCCHHH-------HHHHHHHh--
Confidence 469999999999999999999998764322 12333444455667889999999998321 11112222
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++.... ++... ...+..+.+... ....|+++|+||+|+.
T Consensus 83 ~~ad~ii~vvD~~~~~~~~~~-~~~l~~l~~~~~-~~~~piliv~NK~Dl~ 131 (184)
T smart00178 83 PEVNGIVYLVDAYDKERFAES-KRELDALLSDEE-LATVPFLILGNKIDAP 131 (184)
T ss_pred CCCCEEEEEEECCcHHHHHHH-HHHHHHHHcChh-hcCCCEEEEEeCcccc
Confidence 689999999766431 12222 222322222111 1126999999999984
No 154
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.55 E-value=3.3e-13 Score=115.76 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=73.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
||+++|.+|+|||||++++++.... .....++.........+++ ..+.+|||||..+..... ..+ ..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-------~~~--~~ 69 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMR-------KLS--IQ 69 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHH-------HHH--hh
Confidence 6899999999999999999987632 2223333233333455566 578999999974332111 111 15
Q ss_pred CCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 119 TIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 119 ~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.+|++++|++++.. .+. ....++..+.+.... ...|+++|+||+|+.+
T Consensus 70 ~ad~vilv~d~~~~~s~~-~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~ 118 (198)
T cd04147 70 NSDAFALVYAVDDPESFE-EVERLREEILEVKED-KFVPIVVVGNKADSLE 118 (198)
T ss_pred cCCEEEEEEECCCHHHHH-HHHHHHHHHHHhcCC-CCCcEEEEEEcccccc
Confidence 89999999887532 121 223444555554332 2379999999999864
No 155
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.8e-13 Score=113.41 Aligned_cols=129 Identities=15% Similarity=0.114 Sum_probs=90.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..+||+++|..+|||||||++..-... .....+..+.+....++.+.|+ .+.+|||+|...+... +-.++
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~f-d~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrsl-------ipsY~ 92 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------IPSYI 92 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhh-cccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhh-------hhhhc
Confidence 458999999999999999999986542 3333333445555555555554 7899999999543322 22222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHH
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF 177 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~ 177 (309)
+++.++++|+++....-......|++.+....|.+- ..+++|+||.||.++.+++.+|-
T Consensus 93 --Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~-viI~LVGnKtDL~dkrqvs~eEg 151 (221)
T KOG0094|consen 93 --RDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDD-VIIFLVGNKTDLSDKRQVSIEEG 151 (221)
T ss_pred --cCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCc-eEEEEEcccccccchhhhhHHHH
Confidence 689999999998654333555678888887777542 56788999999987766555543
No 156
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.55 E-value=1.7e-13 Score=131.03 Aligned_cols=177 Identities=17% Similarity=0.166 Sum_probs=106.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccccc------------------------------CCCCCCCeeEEEEeeeCCe
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVS------------------------------TFQSEGPRPVMVSRSRAGF 87 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~------------------------------~~~~~t~~~~~~~~~~~g~ 87 (309)
..++|+++|++++|||||+|+|+........ ..++.|.+.....++.++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 5699999999999999999999954332211 1356677777777778899
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021699 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
.+.||||||..+.. ......+ ..+|++++|++.+.. .+...+.+.+..+. ..+. +++++|+||+|+
T Consensus 85 ~i~liDtpG~~~~~---~~~~~~~------~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~~~---~~iivviNK~Dl 151 (425)
T PRK12317 85 YFTIVDCPGHRDFV---KNMITGA------SQADAAVLVVAADDAGGVMPQTREHVFLAR-TLGI---NQLIVAINKMDA 151 (425)
T ss_pred EEEEEECCCcccch---hhHhhch------hcCCEEEEEEEcccCCCCCcchHHHHHHHH-HcCC---CeEEEEEEcccc
Confidence 99999999974321 1121212 589999999877531 24444555554443 3342 469999999998
Q ss_pred CCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCch--HHHHHHHHH
Q 021699 167 SLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWI--PNLVKTITE 242 (309)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~--~~L~~~i~~ 242 (309)
...+ .+. .....+.+++++... ++. ...+|++++|+. ++.+.+..- ...+|. +.|++.+..
T Consensus 152 ~~~~---~~~-~~~~~~~i~~~l~~~-g~~-----~~~~~ii~iSA~----~g~gi~~~~-~~~~wy~g~~L~~~l~~ 214 (425)
T PRK12317 152 VNYD---EKR-YEEVKEEVSKLLKMV-GYK-----PDDIPFIPVSAF----EGDNVVKKS-ENMPWYNGPTLLEALDN 214 (425)
T ss_pred cccc---HHH-HHHHHHHHHHHHHhh-CCC-----cCcceEEEeecc----cCCCccccc-cCCCcccHHHHHHHHhc
Confidence 6321 111 111224444444322 111 113678888763 444443322 234675 356666543
No 157
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.55 E-value=5e-13 Score=113.99 Aligned_cols=116 Identities=16% Similarity=0.203 Sum_probs=74.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..+||+++|.+|+|||||++++..... . ....++...........++ ..+.||||||...... +...
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~--------l~~~- 70 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAF-P-KEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDR--------LRTL- 70 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCC-C-cCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhh--------hhhh-
Confidence 358999999999999999999997653 1 1222221122222233444 4688999999843221 2211
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
...++|++++|++++.. ++......|+..+.... . ..|+++|+||.|+.
T Consensus 71 ~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgNK~DL~ 120 (191)
T cd01875 71 SYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-P--NVPILLVGTKKDLR 120 (191)
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-C--CCCEEEEEeChhhh
Confidence 12689999999998643 24333334555555432 2 27999999999985
No 158
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.55 E-value=1.5e-13 Score=135.80 Aligned_cols=114 Identities=19% Similarity=0.251 Sum_probs=80.8
Q ss_pred eCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEE
Q 021699 46 GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLY 125 (309)
Q Consensus 46 G~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~ 125 (309)
|.+|+|||||+|+++|... .+++.+++|.+.......+++.++.+|||||..+......+ ....+.++....+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~-e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLE-EEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchH-HHHHHHHHhhcCCCEEEE
Confidence 8999999999999999864 67888898888877777888889999999999765432211 122334455568999999
Q ss_pred EEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 126 VDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 126 v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
|++.+ .+. ........+.+. ..|+++|+||+|+.+.
T Consensus 79 VvDat--~le-r~l~l~~ql~~~-----~~PiIIVlNK~Dl~~~ 114 (591)
T TIGR00437 79 VVDAS--NLE-RNLYLTLQLLEL-----GIPMILALNLVDEAEK 114 (591)
T ss_pred EecCC--cch-hhHHHHHHHHhc-----CCCEEEEEehhHHHHh
Confidence 95543 332 222333333322 2799999999998543
No 159
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.55 E-value=4.8e-13 Score=108.41 Aligned_cols=118 Identities=19% Similarity=0.262 Sum_probs=76.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+++|.+|+|||||+|++++.. ......++.+..........++ ..+.+|||||..+........ .
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~---~----- 71 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLY---Y----- 71 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHH---H-----
Confidence 3799999999999999999999987 5666666666666665566777 678999999964432211111 1
Q ss_pred cCCCcEEEEEEeCCcc--ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 117 NKTIDVLLYVDRLDVY--RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~--~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..++.+++++++... .+......+...+...... ..|+++|+||+|+..
T Consensus 72 -~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 72 -RAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRD 122 (161)
T ss_pred -hhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCc
Confidence 345666666544321 1122222344444444322 369999999999863
No 160
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.54 E-value=3.1e-13 Score=114.45 Aligned_cols=115 Identities=14% Similarity=0.205 Sum_probs=71.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
..++|+++|.+|+|||||++++...... ...++. ..........+..+.+|||||.... . .....++
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~--~~~~T~--~~~~~~~~~~~~~~~l~D~~G~~~~---~----~~~~~~~-- 82 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVV--TTIPTI--GFNVETVEYKNLKFTMWDVGGQDKL---R----PLWRHYY-- 82 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCcc--ccceEEEEECCEEEEEEECCCCHhH---H----HHHHHHh--
Confidence 4699999999999999999999755432 222222 2222344567789999999998321 1 1112222
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++|+|++.+.. ++......+.+.+..... ...|+++|+||.|+.
T Consensus 83 ~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~--~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 83 QNTNGLIFVVDSNDRERIGDAREELERMLSEDEL--RDAVLLVFANKQDLP 131 (182)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhh--cCCCEEEEEeCCCCC
Confidence 689999999887532 233332222222222111 126899999999984
No 161
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.54 E-value=3.8e-13 Score=110.77 Aligned_cols=112 Identities=12% Similarity=0.171 Sum_probs=69.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
||+++|.+|+|||||+|++...... ...+ |...........+..+.+|||||..+.. .....++ .++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~--~~~ 67 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--TTIP--TIGFNVETVTYKNLKFQVWDLGGQTSIR-------PYWRCYY--SNT 67 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--CcCC--ccCcCeEEEEECCEEEEEEECCCCHHHH-------HHHHHHh--cCC
Confidence 6899999999999999999876532 2222 2112222345567899999999984321 1112222 589
Q ss_pred cEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 121 DVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 121 d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
|++++|++.+... +......+...+... . ....|+++|+||+|+.
T Consensus 68 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~-~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 68 DAIIYVVDSTDRDRLGTAKEELHAMLEEE-E-LKGAVLLVFANKQDMP 113 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhch-h-hcCCcEEEEEeCCCCC
Confidence 9999998765421 222222232222221 1 1127999999999985
No 162
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.54 E-value=6e-13 Score=111.05 Aligned_cols=124 Identities=19% Similarity=0.283 Sum_probs=75.3
Q ss_pred HHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 021699 28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 107 (309)
Q Consensus 28 ~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~ 107 (309)
.+++..... +.++|+++|.+|+|||||+|++.+.......+..+ .........+..+.+|||||... .
T Consensus 4 ~~~~~~~~~-~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g----~~~~~i~~~~~~~~~~D~~G~~~-------~ 71 (173)
T cd04155 4 LLRKLRKSS-EEPRILILGLDNAGKTTILKQLASEDISHITPTQG----FNIKTVQSDGFKLNVWDIGGQRA-------I 71 (173)
T ss_pred HHHHhhccC-CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCC----cceEEEEECCEEEEEEECCCCHH-------H
Confidence 344444433 47999999999999999999999975422222111 22234456788999999999732 1
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 108 IQLIKRFLLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 108 ~~~i~~~~~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
......++ .++|++++|+++.... +..... .+..+.+... ....|+++++||+|+.
T Consensus 72 ~~~~~~~~--~~~~~ii~v~D~~~~~~~~~~~~-~~~~~~~~~~-~~~~p~ivv~nK~D~~ 128 (173)
T cd04155 72 RPYWRNYF--ENTDCLIYVIDSADKKRLEEAGA-ELVELLEEEK-LAGVPVLVFANKQDLA 128 (173)
T ss_pred HHHHHHHh--cCCCEEEEEEeCCCHHHHHHHHH-HHHHHHhChh-hcCCCEEEEEECCCCc
Confidence 11222222 5889999997765321 222222 2222222111 1127999999999985
No 163
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.53 E-value=3.8e-13 Score=111.24 Aligned_cols=113 Identities=15% Similarity=0.225 Sum_probs=69.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
+||+++|.+|+|||||++++..... ....+..+... .........+.+|||||.... ......+. .+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~--~~~~pt~g~~~--~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~--~~ 67 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEI--VTTIPTIGFNV--ETVEYKNISFTVWDVGGQDKI-------RPLWRHYF--QN 67 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--cccCCCCCcce--EEEEECCEEEEEEECCCCHhH-------HHHHHHHh--cC
Confidence 5899999999999999999975543 22222222222 234456788999999998321 11112222 68
Q ss_pred CcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 120 IDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 120 ~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+|+++||++.+.. ++......+.+.+...... ..|+++|+||.|+.
T Consensus 68 ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~ 114 (159)
T cd04150 68 TQGLIFVVDSNDRERIGEAREELQRMLNEDELR--DAVLLVFANKQDLP 114 (159)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhc--CCCEEEEEECCCCC
Confidence 9999999877532 2333322222222221111 26999999999984
No 164
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.53 E-value=5.6e-14 Score=130.97 Aligned_cols=147 Identities=22% Similarity=0.278 Sum_probs=111.1
Q ss_pred HHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 021699 24 KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 103 (309)
Q Consensus 24 ~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~ 103 (309)
...+.+.++...+.+.-+++|+|.+|+|||||+|.++..++ .+.+++.+|.......+.+.-..+.++||||+.|....
T Consensus 153 qVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plE 231 (620)
T KOG1490|consen 153 QVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEE 231 (620)
T ss_pred HHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccCcchh
Confidence 34455666777788888999999999999999999998876 78889999988777777777778999999999886555
Q ss_pred cHHHHHHHH-HhhhcCCCcEEEEEEeCCccc-cC-hhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 104 NYHAIQLIK-RFLLNKTIDVLLYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 104 ~~~~~~~i~-~~~~~~~~d~il~v~~~d~~~-~~-~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
+...++... ..+. .=--+||||.++.... .+ .....++..|...|.. +++|+|+||+|...+.+.+.+
T Consensus 232 drN~IEmqsITALA-HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaN---K~~IlvlNK~D~m~~edL~~~ 302 (620)
T KOG1490|consen 232 DRNIIEMQIITALA-HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFAN---KVTILVLNKIDAMRPEDLDQK 302 (620)
T ss_pred hhhHHHHHHHHHHH-HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcC---CceEEEeecccccCccccCHH
Confidence 444433221 1111 1235689998876542 44 3456789999999975 799999999999988776555
No 165
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.53 E-value=4e-13 Score=110.59 Aligned_cols=112 Identities=21% Similarity=0.229 Sum_probs=67.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
+|+++|.+|+|||||+|++++...... .+..... ...... .+..+.+|||||.... . .....++ .+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~--~~t~~~~--~~~~~~~~~~~l~i~D~~G~~~~---~----~~~~~~~--~~ 67 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT--IPTVGFN--VEMLQLEKHLSLTVWDVGGQEKM---R----TVWKCYL--EN 67 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc--cCccCcc--eEEEEeCCceEEEEEECCCCHhH---H----HHHHHHh--cc
Confidence 589999999999999999998874322 2221111 112222 3468999999998321 1 1111222 57
Q ss_pred CcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 120 IDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 120 ~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+|++++|++.+.. ++...+. ++..+.+... ....|+++|+||+|+.
T Consensus 68 ~~~iv~v~D~~~~~~~~~~~~-~~~~~~~~~~-~~~~piilv~nK~Dl~ 114 (160)
T cd04156 68 TDGLVYVVDSSDEARLDESQK-ELKHILKNEH-IKGVPVVLLANKQDLP 114 (160)
T ss_pred CCEEEEEEECCcHHHHHHHHH-HHHHHHhchh-hcCCCEEEEEECcccc
Confidence 8999999776532 1222222 2222222111 0127999999999984
No 166
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.53 E-value=5.7e-13 Score=116.19 Aligned_cols=117 Identities=10% Similarity=0.055 Sum_probs=75.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...+||+++|.+|+|||||+++++.... .....+..+.......+.. ....+.+|||||......... .+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f-~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~ 82 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD-------GY 82 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCC-CCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhH-------HH
Confidence 3569999999999999999999876642 1111122222222222323 345889999999854332211 11
Q ss_pred hhcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
. .++|++|+|++++... + ..-..|++.+.+... ..|+++|+||+|+.
T Consensus 83 ~--~~~~~~ilvfD~~~~~s~-~~i~~w~~~i~~~~~---~~piilvgNK~Dl~ 130 (219)
T PLN03071 83 Y--IHGQCAIIMFDVTARLTY-KNVPTWHRDLCRVCE---NIPIVLCGNKVDVK 130 (219)
T ss_pred c--ccccEEEEEEeCCCHHHH-HHHHHHHHHHHHhCC---CCcEEEEEEchhhh
Confidence 1 5889999998886432 2 222456666765532 26999999999984
No 167
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.53 E-value=3.8e-13 Score=112.86 Aligned_cols=112 Identities=14% Similarity=0.143 Sum_probs=67.8
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCccccc-----C---------CCCCCCeeEEEEeee-----CCeEEEEEeCCCCCCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVS-----T---------FQSEGPRPVMVSRSR-----AGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~-----~---------~~~~t~~~~~~~~~~-----~g~~l~liDTPG~~~~~ 101 (309)
+|+++|.+|+|||||+|+|++....... . ..+.+.........+ .+..+.||||||+.+..
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 6899999999999999999975321110 0 112222222222222 35578899999995421
Q ss_pred CCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.....++ ..+|++++|++... ..+..+...+..+.. . ..|+++|+||+|+.
T Consensus 82 -------~~~~~~~--~~ad~~i~v~D~~~-~~~~~~~~~~~~~~~---~--~~~iiiv~NK~Dl~ 132 (179)
T cd01890 82 -------YEVSRSL--AACEGALLLVDATQ-GVEAQTLANFYLALE---N--NLEIIPVINKIDLP 132 (179)
T ss_pred -------HHHHHHH--HhcCeEEEEEECCC-CccHhhHHHHHHHHH---c--CCCEEEEEECCCCC
Confidence 1222233 47999999977653 233334333333222 1 26899999999985
No 168
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.53 E-value=8.9e-13 Score=110.21 Aligned_cols=114 Identities=15% Similarity=0.165 Sum_probs=72.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
.||+++|.+|+|||||++++.+... . ....++..........+++. .+.+|||||..+...... . ..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~--~~ 70 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF-P-EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRP-------L--SY 70 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-C-CCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccc-------c--cc
Confidence 5899999999999999999998753 1 22222222222223444444 679999999844322211 1 12
Q ss_pred CCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++++... +......++..+....+ ..|+++|+||+|+.
T Consensus 71 ~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 118 (175)
T cd01870 71 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLR 118 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhcc
Confidence 5889999998887432 22333345555554322 26999999999985
No 169
>COG2262 HflX GTPases [General function prediction only]
Probab=99.52 E-value=1.2e-12 Score=120.36 Aligned_cols=127 Identities=19% Similarity=0.184 Sum_probs=88.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.-..|.++|.||+|||||+|+|++... .+.+.-..|-++.+....+. |..+.+.||-||.+ .......+.++..+.
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~-~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~--~LP~~LV~AFksTLE 267 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADV-YVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIR--DLPHPLVEAFKSTLE 267 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCe-eccccccccccCceeEEEeCCCceEEEecCccCcc--cCChHHHHHHHHHHH
Confidence 347899999999999999999998875 44555566777777777766 68999999999964 344455555555552
Q ss_pred -cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 117 -NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 117 -~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
...+|++|+|++................|.+. |-.- .|+|+|+||+|..++
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el-~~~~-~p~i~v~NKiD~~~~ 319 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEI-GADE-IPIILVLNKIDLLED 319 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHc-CCCC-CCEEEEEecccccCc
Confidence 36899999996654322222222333334333 3222 799999999998643
No 170
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.52 E-value=8.1e-14 Score=122.96 Aligned_cols=131 Identities=20% Similarity=0.266 Sum_probs=95.0
Q ss_pred cCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH--HHH
Q 021699 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ--LIK 112 (309)
Q Consensus 35 ~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~--~i~ 112 (309)
++...++|+|+|.+|+|||||.|.++|..++.++....+|++.....+.-+...+.++||||+..........+. .+.
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 344579999999999999999999999999999999999998888888888889999999999765433322111 111
Q ss_pred Hhh-hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021699 113 RFL-LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 113 ~~~-~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
... ....+|++++++++.+.+ +...-+.+..+.+... .|.++|+||.|...+.
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr-~~l~p~vl~~l~~ys~----ips~lvmnkid~~k~k 201 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATR-TPLHPRVLHMLEEYSK----IPSILVMNKIDKLKQK 201 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCc-CccChHHHHHHHHHhc----CCceeeccchhcchhh
Confidence 111 236899999997775422 2333444555544422 5899999999986443
No 171
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.52 E-value=5.4e-13 Score=112.89 Aligned_cols=114 Identities=16% Similarity=0.210 Sum_probs=71.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+.++|+++|.+|+|||||++++..... ....++.+. ........+..+.+|||||... .......++
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~--~~~~pt~g~--~~~~~~~~~~~~~i~D~~Gq~~-------~~~~~~~~~- 82 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIPTIGF--NVETVEYKNISFTVWDVGGQDK-------IRPLWRHYF- 82 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC--ccccCCcce--eEEEEEECCEEEEEEECCCCHH-------HHHHHHHHh-
Confidence 3569999999999999999999986543 222222222 2234556788999999999722 111112222
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCcc--ccCcEEEEEecccCC
Q 021699 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQ--IWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~--~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++.... ++.. ..+.+.+.+... ...|+++|+||.|+.
T Consensus 83 -~~a~~iI~V~D~s~~~s~~~----~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 83 -QNTQGLIFVVDSNDRDRVVE----ARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred -ccCCEEEEEEeCCcHHHHHH----HHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 689999999776532 2222 222333322210 126899999999984
No 172
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.52 E-value=3e-13 Score=111.97 Aligned_cols=146 Identities=18% Similarity=0.267 Sum_probs=83.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
+|+++|.+|+|||||+|+|.|.... . .... ...+.+. .+|||||+.... ......+... ..++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~------~~~~--~v~~~~~--~~iDtpG~~~~~---~~~~~~~~~~--~~~a 65 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A------RKTQ--AVEFNDK--GDIDTPGEYFSH---PRWYHALITT--LQDV 65 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C------ccce--EEEECCC--CcccCCccccCC---HHHHHHHHHH--HhcC
Confidence 6999999999999999999987521 1 1111 1222222 269999985322 2222222222 2689
Q ss_pred cEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccccccccc
Q 021699 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDI 200 (309)
Q Consensus 121 d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 200 (309)
|++++|++.+... +.... .+.+. +. .+|+++++||+|+... +. +.+.+.+.... +
T Consensus 66 d~il~v~d~~~~~-s~~~~----~~~~~-~~--~~~ii~v~nK~Dl~~~---~~--------~~~~~~~~~~~-~----- 120 (158)
T PRK15467 66 DMLIYVHGANDPE-SRLPA----GLLDI-GV--SKRQIAVISKTDMPDA---DV--------AATRKLLLETG-F----- 120 (158)
T ss_pred CEEEEEEeCCCcc-cccCH----HHHhc-cC--CCCeEEEEEccccCcc---cH--------HHHHHHHHHcC-C-----
Confidence 9999998775321 11111 12221 11 2689999999998421 12 22233332211 1
Q ss_pred ccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhc
Q 021699 201 QGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246 (309)
Q Consensus 201 ~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~ 246 (309)
..|++.+++. ++.+ +.+|++.+...+.+
T Consensus 121 ---~~p~~~~Sa~----~g~g-----------i~~l~~~l~~~~~~ 148 (158)
T PRK15467 121 ---EEPIFELNSH----DPQS-----------VQQLVDYLASLTKQ 148 (158)
T ss_pred ---CCCEEEEECC----CccC-----------HHHHHHHHHHhchh
Confidence 1588888774 4443 67777777666544
No 173
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.51 E-value=8.3e-13 Score=108.91 Aligned_cols=123 Identities=24% Similarity=0.263 Sum_probs=82.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
||+++|..|+|||||++++.+... .....+....+........++. .+.||||+|.... . .... .++ .
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~---~-~~~~---~~~--~ 70 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF---D-SLRD---IFY--R 70 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG---H-HHHH---HHH--T
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-ccccccccccccccccccccccccccccccccccccc---c-cccc---ccc--c
Confidence 799999999999999999998753 2222222224444555555554 6899999997321 1 1111 111 6
Q ss_pred CCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021699 119 TIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 119 ~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
++|++++|++++... +... ..|+..+....+.. .|+++|+||.|+.+....+.++
T Consensus 71 ~~~~~ii~fd~~~~~S~~~~-~~~~~~i~~~~~~~--~~iivvg~K~D~~~~~~v~~~~ 126 (162)
T PF00071_consen 71 NSDAIIIVFDVTDEESFENL-KKWLEEIQKYKPED--IPIIVVGNKSDLSDEREVSVEE 126 (162)
T ss_dssp TESEEEEEEETTBHHHHHTH-HHHHHHHHHHSTTT--SEEEEEEETTTGGGGSSSCHHH
T ss_pred cccccccccccccccccccc-cccccccccccccc--ccceeeeccccccccccchhhH
Confidence 899999999986532 4333 37888887776622 6899999999987545555543
No 174
>PLN03127 Elongation factor Tu; Provisional
Probab=99.50 E-value=2.1e-12 Score=123.66 Aligned_cols=179 Identities=15% Similarity=0.100 Sum_probs=106.8
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCC------Ccccc---------cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 021699 36 NVNTLTILVMGKGGVGKSSTVNSIIGE------KAVTV---------STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~------~~~~~---------~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~ 100 (309)
...+++|+++|+.++|||||+++|++. ..... ....+.|.+.....++.++..+.++||||+.+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~- 136 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD- 136 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc-
Confidence 456799999999999999999999832 21111 11245566666666677788999999999842
Q ss_pred CCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCc-EEEEEecccCCCCCCCCHHHHHH
Q 021699 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLSLPDRLDYEVFCS 179 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~-~iiV~tk~D~~~~~~~~~~~~~~ 179 (309)
+...+...+ ..+|++++|++.+. .+...+.+.+..+... | .| +|+++||+|+.+. ++..+
T Consensus 137 ------f~~~~~~g~--~~aD~allVVda~~-g~~~qt~e~l~~~~~~-g----ip~iIvviNKiDlv~~-----~~~~~ 197 (447)
T PLN03127 137 ------YVKNMITGA--AQMDGGILVVSAPD-GPMPQTKEHILLARQV-G----VPSLVVFLNKVDVVDD-----EELLE 197 (447)
T ss_pred ------hHHHHHHHH--hhCCEEEEEEECCC-CCchhHHHHHHHHHHc-C----CCeEEEEEEeeccCCH-----HHHHH
Confidence 222222222 36999999977643 4567777777766544 3 45 6789999998632 12222
Q ss_pred hhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021699 180 KRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 180 ~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
...+.+++++... .+. ...+|++++++... ..+.+.. ...+.+..|++.+...++
T Consensus 198 ~i~~~i~~~l~~~-~~~-----~~~vpiip~Sa~sa-~~g~n~~----~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 198 LVEMELRELLSFY-KFP-----GDEIPIIRGSALSA-LQGTNDE----IGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHHHHHHHHHHh-CCC-----CCcceEEEecccee-ecCCCcc----cccchHHHHHHHHHHhCC
Confidence 1123444444321 111 12378888765311 1221110 111236788888777654
No 175
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=9.4e-13 Score=110.76 Aligned_cols=126 Identities=16% Similarity=0.172 Sum_probs=89.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.-++|+++|.+|||||+++-++..... ..+.....+.+....+...+|. .+.+|||+|...+... +..+.
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f-~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti-------~~sYy 82 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSF-NTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTI-------TTAYY 82 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccC-cCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHH-------HHHHH
Confidence 459999999999999999988886652 3333333344555555666665 6799999999543322 22333
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
++++.+++|+++....-.+....|++.+.+....+ .+.++|+||+|+..+..++.+
T Consensus 83 --rgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~--v~~~LvGNK~D~~~~R~V~~e 138 (207)
T KOG0078|consen 83 --RGAMGILLVYDITNEKSFENIRNWIKNIDEHASDD--VVKILVGNKCDLEEKRQVSKE 138 (207)
T ss_pred --hhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCC--CcEEEeeccccccccccccHH
Confidence 69999999999876543355566999999986654 799999999999765554444
No 176
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.50 E-value=7e-13 Score=114.28 Aligned_cols=165 Identities=18% Similarity=0.156 Sum_probs=89.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCccc-ccC-CCCCCCeeEEEEeee---------------------------CC----
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVT-VST-FQSEGPRPVMVSRSR---------------------------AG---- 86 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~-~~~-~~~~t~~~~~~~~~~---------------------------~g---- 86 (309)
++|+++|..|+|||||+.+|.+..... ... ..+.+.........+ .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999998762100 000 001111100000000 02
Q ss_pred --eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecc
Q 021699 87 --FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 87 --~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~ 164 (309)
..+.||||||.. .+...+...+ ..+|++++|++.+...........+..+.. .+. +|+++|+||+
T Consensus 81 ~~~~i~~iDtPG~~-------~~~~~~~~~~--~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvNK~ 147 (203)
T cd01888 81 LVRHVSFVDCPGHE-------ILMATMLSGA--AVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQNKI 147 (203)
T ss_pred cccEEEEEECCChH-------HHHHHHHHhh--hcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEEch
Confidence 679999999962 1222221111 578999999777642233333444544432 232 5799999999
Q ss_pred cCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHH
Q 021699 165 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVV 244 (309)
Q Consensus 165 D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~ 244 (309)
|+..+. ...+. .+.+++.+.... ...+|++++++. ++.+ +++|++.+...+
T Consensus 148 Dl~~~~--~~~~~----~~~i~~~~~~~~--------~~~~~i~~vSA~----~g~g-----------i~~L~~~l~~~l 198 (203)
T cd01888 148 DLVKEE--QALEN----YEQIKKFVKGTI--------AENAPIIPISAQ----LKYN-----------IDVLLEYIVKKI 198 (203)
T ss_pred hccCHH--HHHHH----HHHHHHHHhccc--------cCCCcEEEEeCC----CCCC-----------HHHHHHHHHHhC
Confidence 985321 11111 133334333210 113688888763 3333 778888777655
Q ss_pred hc
Q 021699 245 LN 246 (309)
Q Consensus 245 ~~ 246 (309)
+.
T Consensus 199 ~~ 200 (203)
T cd01888 199 PT 200 (203)
T ss_pred CC
Confidence 43
No 177
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.50 E-value=1.3e-12 Score=110.89 Aligned_cols=116 Identities=15% Similarity=0.191 Sum_probs=74.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
....+|+++|.+|+|||||+|++.+...... .+|..+......+++.++.++||||..+. ......++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~----~~T~~~~~~~i~~~~~~~~l~D~~G~~~~-------~~~~~~~~- 84 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQH----VPTLHPTSEELTIGNIKFKTFDLGGHEQA-------RRLWKDYF- 84 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCccc----CCccCcceEEEEECCEEEEEEECCCCHHH-------HHHHHHHh-
Confidence 3569999999999999999999998764221 12333344556678889999999997321 11112222
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++.... ++.. ....+..+.+.. .....|+++|+||+|+.
T Consensus 85 -~~ad~iilV~D~~~~~s~~~-~~~~~~~i~~~~-~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 85 -PEVDGIVFLVDAADPERFQE-SKEELDSLLSDE-ELANVPFLILGNKIDLP 133 (190)
T ss_pred -ccCCEEEEEEECCcHHHHHH-HHHHHHHHHcCc-cccCCCEEEEEeCCCCC
Confidence 588999999776432 2221 222333332211 11237999999999985
No 178
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.50 E-value=1.8e-12 Score=108.71 Aligned_cols=115 Identities=10% Similarity=0.065 Sum_probs=71.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
..++|+++|.+|+|||||++++.+...... .+ |.........+.+..+.+|||||..... .....++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~-- 80 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHT--SP--TIGSNVEEIVYKNIRFLMWDIGGQESLR-------SSWNTYY-- 80 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCc--CC--ccccceEEEEECCeEEEEEECCCCHHHH-------HHHHHHh--
Confidence 358999999999999999999987654222 22 2222233455678899999999983211 1111222
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++.+.. ++... ...+..+.+..+ ....|+++|+||+|+.
T Consensus 81 ~~~d~vi~V~D~s~~~~~~~~-~~~l~~~~~~~~-~~~~p~viv~NK~Dl~ 129 (174)
T cd04153 81 TNTDAVILVIDSTDRERLPLT-KEELYKMLAHED-LRKAVLLVLANKQDLK 129 (174)
T ss_pred hcCCEEEEEEECCCHHHHHHH-HHHHHHHHhchh-hcCCCEEEEEECCCCC
Confidence 589999999776532 12112 222332222111 1126999999999984
No 179
>PLN03126 Elongation factor Tu; Provisional
Probab=99.49 E-value=2.2e-12 Score=124.23 Aligned_cols=153 Identities=12% Similarity=0.051 Sum_probs=94.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcccc---------------cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 021699 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTV---------------STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~---------------~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~ 100 (309)
....++|+++|..++|||||+++|++...... ....+.|.+.....++.++..+.+|||||..+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~- 156 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD- 156 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH-
Confidence 34579999999999999999999996321111 11123344444444556788999999999833
Q ss_pred CCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHh
Q 021699 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSK 180 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~ 180 (309)
+...+...+ ..+|++++|++.+. .......+.+..+... |. +++|+++||+|+.+. ++..+.
T Consensus 157 ------f~~~~~~g~--~~aD~ailVVda~~-G~~~qt~e~~~~~~~~-gi---~~iIvvvNK~Dl~~~-----~~~~~~ 218 (478)
T PLN03126 157 ------YVKNMITGA--AQMDGAILVVSGAD-GPMPQTKEHILLAKQV-GV---PNMVVFLNKQDQVDD-----EELLEL 218 (478)
T ss_pred ------HHHHHHHHH--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CeEEEEEecccccCH-----HHHHHH
Confidence 222222222 48899999977653 3556666666555433 42 348899999998632 222222
Q ss_pred hhHHHHHhhcccccccccccccCCCcEEEeccc
Q 021699 181 RSEALLKFVSPSTWMKKKDIQGSFVPVVLVENS 213 (309)
Q Consensus 181 ~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~ 213 (309)
..+.+++++.... +. ...+|++++++.
T Consensus 219 i~~~i~~~l~~~g-~~-----~~~~~~vp~Sa~ 245 (478)
T PLN03126 219 VELEVRELLSSYE-FP-----GDDIPIISGSAL 245 (478)
T ss_pred HHHHHHHHHHhcC-CC-----cCcceEEEEEcc
Confidence 2356666665431 21 124788888764
No 180
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.49 E-value=6e-13 Score=118.59 Aligned_cols=116 Identities=22% Similarity=0.319 Sum_probs=94.3
Q ss_pred hhhccccCCCChhhHHHHHHHHHHhhhc--C------------CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCC
Q 021699 8 IREWMGIQQFPPATQTKLLELLGKLKQE--N------------VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE 73 (309)
Q Consensus 8 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~--~------------~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~ 73 (309)
++-.+|+++.-.+++.+|.++.+.+... . ...-+++++|.+++|||||+|.|++.+. .+.+++.+
T Consensus 18 tpknKaTe~hig~lKaklA~Lr~El~~~~~~~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FT 96 (365)
T COG1163 18 TPKNKATEHHIGLLKAKLAELREELEKRKSKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKS-EVADYPFT 96 (365)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEeccCCeEEEEEcCCCccHHHHHHHHhCCCc-cccccCce
Confidence 4667899999999999999888887762 1 1246899999999999999999999875 78889999
Q ss_pred CCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc----HHHHHHHHHhhhcCCCcEEEEEEeCC
Q 021699 74 GPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN----YHAIQLIKRFLLNKTIDVLLYVDRLD 130 (309)
Q Consensus 74 t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~----~~~~~~i~~~~~~~~~d~il~v~~~d 130 (309)
|..+....++++|..++++|+||+.++.... .+.+..+ +.+|++++|++++
T Consensus 97 Tl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~------R~ADlIiiVld~~ 151 (365)
T COG1163 97 TLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA------RNADLIIIVLDVF 151 (365)
T ss_pred ecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeee------ccCCEEEEEEecC
Confidence 9999999999999999999999998754333 2344444 5888888886654
No 181
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.49 E-value=2.4e-12 Score=104.83 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=68.6
Q ss_pred EEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCc
Q 021699 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 121 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d 121 (309)
|+++|.+|+|||||+|+|.+.+. .....+..+.. ......++..+.+|||||.... ......++ ..+|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~--~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~--~~~d 69 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF-SEDTIPTVGFN--MRKVTKGNVTLKVWDLGGQPRF-------RSMWERYC--RGVN 69 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC-CcCccCCCCcc--eEEEEECCEEEEEEECCCCHhH-------HHHHHHHH--hcCC
Confidence 78999999999999999999864 22222222222 2234456788999999997321 11222233 5889
Q ss_pred EEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 122 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 122 ~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
++++|++++....-......+..+..... ....|+++|+||+|+..
T Consensus 70 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~ 115 (159)
T cd04159 70 AIVYVVDAADRTALEAAKNELHDLLEKPS-LEGIPLLVLGNKNDLPG 115 (159)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccC
Confidence 99999776531100111222222222111 12269999999999753
No 182
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.49 E-value=9.8e-13 Score=106.30 Aligned_cols=101 Identities=19% Similarity=0.264 Sum_probs=63.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
||+++|.+|+|||||+|++.+.... .. .| ....+.+ .+|||||... ........+... ..++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~-~t-----~~~~~~~---~~iDt~G~~~---~~~~~~~~~~~~--~~~a 63 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YK-KT-----QAVEYND---GAIDTPGEYV---ENRRLYSALIVT--AADA 63 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----cc-cc-----eeEEEcC---eeecCchhhh---hhHHHHHHHHHH--hhcC
Confidence 7999999999999999999987631 11 11 1222333 6899999731 122223322222 3699
Q ss_pred cEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 121 d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
|++++|++++... +..+..+.. ..+ .|+++|+||+|+.+
T Consensus 64 d~vilv~d~~~~~-s~~~~~~~~----~~~----~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 64 DVIALVQSATDPE-SRFPPGFAS----IFV----KPVIGLVTKIDLAE 102 (142)
T ss_pred CEEEEEecCCCCC-cCCChhHHH----hcc----CCeEEEEEeeccCC
Confidence 9999998775422 122223322 222 48999999999853
No 183
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.48 E-value=1.5e-12 Score=108.25 Aligned_cols=110 Identities=17% Similarity=0.188 Sum_probs=69.5
Q ss_pred EEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCc
Q 021699 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 121 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d 121 (309)
|+++|.+|+|||||++++.+... .....+..+.. .......+..+.+|||||..+..... ...+ .++|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~-~~~~~pt~g~~--~~~i~~~~~~l~i~Dt~G~~~~~~~~---~~~~------~~ad 69 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS-LESVVPTTGFN--SVAIPTQDAIMELLEIGGSQNLRKYW---KRYL------SGSQ 69 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC-cccccccCCcc--eEEEeeCCeEEEEEECCCCcchhHHH---HHHH------hhCC
Confidence 79999999999999999998753 22222222222 23345567899999999985432211 1122 5899
Q ss_pred EEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 122 VLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 122 ~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++++|++.+... + .....++..+.... ...|+++|+||.|+.
T Consensus 70 ~ii~V~D~t~~~s~-~~~~~~l~~~~~~~---~~~piilv~NK~Dl~ 112 (164)
T cd04162 70 GLIFVVDSADSERL-PLARQELHQLLQHP---PDLPLVVLANKQDLP 112 (164)
T ss_pred EEEEEEECCCHHHH-HHHHHHHHHHHhCC---CCCcEEEEEeCcCCc
Confidence 999997765421 2 12223333333221 237999999999984
No 184
>PRK12736 elongation factor Tu; Reviewed
Probab=99.48 E-value=1.8e-12 Score=122.67 Aligned_cols=173 Identities=15% Similarity=0.113 Sum_probs=104.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCc------ccc---------cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKA------VTV---------STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~------~~~---------~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
..+++|+++|..++|||||+++|++... +.. ....+.|.+.....+..++..+.++||||..
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~--- 86 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA--- 86 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH---
Confidence 4579999999999999999999997321 000 0123445555445555567789999999973
Q ss_pred CCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCc-EEEEEecccCCCCCCCCHHHHHHh
Q 021699 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLSLPDRLDYEVFCSK 180 (309)
Q Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~-~iiV~tk~D~~~~~~~~~~~~~~~ 180 (309)
++...+...+ ..+|++++|++.+. .+...+.+.+..+... | .| +|+|+||+|+.+. ++..+.
T Consensus 87 ----~f~~~~~~~~--~~~d~~llVvd~~~-g~~~~t~~~~~~~~~~-g----~~~~IvviNK~D~~~~-----~~~~~~ 149 (394)
T PRK12736 87 ----DYVKNMITGA--AQMDGAILVVAATD-GPMPQTREHILLARQV-G----VPYLVVFLNKVDLVDD-----EELLEL 149 (394)
T ss_pred ----HHHHHHHHHH--hhCCEEEEEEECCC-CCchhHHHHHHHHHHc-C----CCEEEEEEEecCCcch-----HHHHHH
Confidence 2222221111 57899999977653 3556677777665543 3 45 7889999998632 222222
Q ss_pred hhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCc---hHHHHHHHHHHHh
Q 021699 181 RSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW---IPNLVKTITEVVL 245 (309)
Q Consensus 181 ~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w---~~~L~~~i~~~~~ 245 (309)
..+.+++++.... +. ...+|++++|+. ++... ...| +..|++.+...++
T Consensus 150 i~~~i~~~l~~~~-~~-----~~~~~ii~vSa~----~g~~~------~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 150 VEMEVRELLSEYD-FP-----GDDIPVIRGSAL----KALEG------DPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHHHHHHHHhC-CC-----cCCccEEEeecc----ccccC------CCcchhhHHHHHHHHHHhCC
Confidence 2345555554321 11 123789988874 22111 1235 5677887777654
No 185
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.48 E-value=1.1e-13 Score=108.53 Aligned_cols=115 Identities=17% Similarity=0.121 Sum_probs=67.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCccc---ccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVT---VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~---~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
||+|+|.+|+|||||+++|++..... .....+.+..............+.++|++|........... +
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~---~------ 71 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFF---L------ 71 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHH---H------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccch---h------
Confidence 79999999999999999999887531 11111222221122222333358899999984432222211 2
Q ss_pred CCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021699 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
..+|++++|++++... +.. -.+++.++....+.....|+++|.||.|
T Consensus 72 ~~~d~~ilv~D~s~~~s~~~-~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 72 KKADAVILVYDLSDPESLEY-LSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHSCEEEEEEECCGHHHHHH-HHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred hcCcEEEEEEcCCChHHHHH-HHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 4789999998876422 211 1234444444432222379999999998
No 186
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.48 E-value=5.2e-12 Score=107.26 Aligned_cols=114 Identities=15% Similarity=0.146 Sum_probs=73.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
.||+|+|.+|+|||||+|.+...... .....+...........++. .+.+|||||..+....... ..
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~---------~~ 70 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFP--EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPL---------SY 70 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchh---------hc
Confidence 58999999999999999999855421 11112222222223344443 5789999998543322211 11
Q ss_pred CCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++++... +......++..+...... .|+++|+||+|+.
T Consensus 71 ~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~---~piilvgnK~Dl~ 118 (187)
T cd04129 71 SKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPN---VPVILVGLKKDLR 118 (187)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEeeChhhh
Confidence 5889999998886532 333334567777655432 7999999999984
No 187
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.47 E-value=4.7e-13 Score=116.80 Aligned_cols=114 Identities=15% Similarity=0.137 Sum_probs=73.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+|+|.+|+|||||++++.+... . ..+.++........+.+++. .+.||||+|..... .++. ...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f-~-~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~--------~l~~-~~~ 70 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY-P-GSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYD--------NVRP-LAY 70 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-C-CccCCccccceEEEEEECCEEEEEEEEeCCCcHHHH--------HHhH-Hhc
Confidence 7999999999999999999998653 2 22222222222333445554 68899999984321 1211 122
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++|+|++++.. ++......|...+.... .. .|+++|+||+|+.
T Consensus 71 ~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-~~--~piiLVgnK~DL~ 118 (222)
T cd04173 71 PDSDAVLICFDISRPETLDSVLKKWQGETQEFC-PN--AKVVLVGCKLDMR 118 (222)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CC--CCEEEEEECcccc
Confidence 699999999888643 23333334554444433 22 6999999999985
No 188
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.47 E-value=1.1e-12 Score=109.29 Aligned_cols=112 Identities=17% Similarity=0.127 Sum_probs=70.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
+|+++|.+|+|||||+|++.+.. .....+ |..........++..+.+|||||.... ......++ .++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~--~~~~~~--t~g~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~--~~a 67 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEI--PKKVAP--TVGFTPTKLRLDKYEVCIFDLGGGANF-------RGIWVNYY--AEA 67 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC--CccccC--cccceEEEEEECCEEEEEEECCCcHHH-------HHHHHHHH--cCC
Confidence 58999999999999999999862 211111 222223355667889999999997321 11112233 689
Q ss_pred cEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 121 DVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 121 d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
|+++||++..... +. .-..++..+..... ....|+++|+||.|+.
T Consensus 68 ~~ii~V~D~s~~~s~~-~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~ 113 (167)
T cd04161 68 HGLVFVVDSSDDDRVQ-EVKEILRELLQHPR-VSGKPILVLANKQDKK 113 (167)
T ss_pred CEEEEEEECCchhHHH-HHHHHHHHHHcCcc-ccCCcEEEEEeCCCCc
Confidence 9999997765321 21 12334444433211 1237999999999984
No 189
>PRK12735 elongation factor Tu; Reviewed
Probab=99.47 E-value=2.7e-12 Score=121.56 Aligned_cols=176 Identities=13% Similarity=0.128 Sum_probs=102.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCC------Cccc----c-----cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 021699 36 NVNTLTILVMGKGGVGKSSTVNSIIGE------KAVT----V-----STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~------~~~~----~-----~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~ 100 (309)
....++|+++|..++|||||+|+|++. ..+. . ....+.|.+.....++.++..+.|+||||..
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~-- 86 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA-- 86 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH--
Confidence 446799999999999999999999962 1100 0 0123444454444555677789999999983
Q ss_pred CCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCc-EEEEEecccCCCCCCCCHHHHHH
Q 021699 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLSLPDRLDYEVFCS 179 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~-~iiV~tk~D~~~~~~~~~~~~~~ 179 (309)
.+...+...+ ..+|++++|++.+. .....+.+.+..+.. .| .| +++|+||+|+.+. ++..+
T Consensus 87 -----~f~~~~~~~~--~~aD~~llVvda~~-g~~~qt~e~l~~~~~-~g----i~~iivvvNK~Dl~~~-----~~~~~ 148 (396)
T PRK12735 87 -----DYVKNMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQ-VG----VPYIVVFLNKCDMVDD-----EELLE 148 (396)
T ss_pred -----HHHHHHHhhh--ccCCEEEEEEECCC-CCchhHHHHHHHHHH-cC----CCeEEEEEEecCCcch-----HHHHH
Confidence 2222222222 58899999977653 355566666655543 23 45 4568999998632 11111
Q ss_pred hhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCc---hHHHHHHHHHHHh
Q 021699 180 KRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW---IPNLVKTITEVVL 245 (309)
Q Consensus 180 ~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w---~~~L~~~i~~~~~ 245 (309)
...+.+++++.... +. ...+|++++++. ++.+.. ....| ++.|++.+...++
T Consensus 149 ~~~~ei~~~l~~~~-~~-----~~~~~ii~~Sa~----~g~n~~----~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 149 LVEMEVRELLSKYD-FP-----GDDTPIIRGSAL----KALEGD----DDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHHHHHHHHcC-CC-----cCceeEEecchh----ccccCC----CCCcccccHHHHHHHHHhcCC
Confidence 11234555554321 11 113788888764 222211 11245 4678888777654
No 190
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.46 E-value=2.8e-12 Score=126.68 Aligned_cols=114 Identities=18% Similarity=0.146 Sum_probs=76.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcc--cccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAV--TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~--~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+.|+++|.+++|||||+|+|+|.... ......+.|.+.....+..++..+.+|||||.. .+...+....
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe-------~f~~~~~~g~-- 71 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE-------KFISNAIAGG-- 71 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH-------HHHHHHHhhh--
Confidence 47999999999999999999986421 112223445555555566777899999999972 2222222222
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++.+. .......+.+..+. ..|. +++++|+||+|+.
T Consensus 72 ~~aD~aILVVDa~~-G~~~qT~ehl~il~-~lgi---~~iIVVlNK~Dlv 116 (581)
T TIGR00475 72 GGIDAALLVVDADE-GVMTQTGEHLAVLD-LLGI---PHTIVVITKADRV 116 (581)
T ss_pred ccCCEEEEEEECCC-CCcHHHHHHHHHHH-HcCC---CeEEEEEECCCCC
Confidence 58999999988764 34445555554443 3342 2499999999986
No 191
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.45 E-value=7.2e-13 Score=110.25 Aligned_cols=112 Identities=23% Similarity=0.352 Sum_probs=71.1
Q ss_pred EEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEee--------------------------------------
Q 021699 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS-------------------------------------- 83 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~-------------------------------------- 83 (309)
|+|+|..++|||||||+|+|.+..+++.. .+|..+......
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~-~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVG-PCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSI 79 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSS-STTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCccccc-ccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhcccccc
Confidence 78999999999999999999986555443 333322211110
Q ss_pred ------------------eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHH
Q 021699 84 ------------------RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAI 145 (309)
Q Consensus 84 ------------------~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l 145 (309)
.....+.||||||+.+...... +.+.+++ ..+|++|||.+.+. .++..+..++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~---~~~~~~~--~~~d~vi~V~~~~~-~~~~~~~~~l~~~ 153 (168)
T PF00350_consen 80 EGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT---EITEEYL--PKADVVIFVVDANQ-DLTESDMEFLKQM 153 (168)
T ss_dssp HTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS---HHHHHHH--STTEEEEEEEETTS-TGGGHHHHHHHHH
T ss_pred cccccccccceeEEeeccccccceEEEeCCccccchhhhH---HHHHHhh--ccCCEEEEEeccCc-ccchHHHHHHHHH
Confidence 0112378999999976443332 3344444 79999999976653 3555566665555
Q ss_pred HHHhCccccCcEEEEEecc
Q 021699 146 TDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 146 ~~~~g~~~~~~~iiV~tk~ 164 (309)
..... ..+++|+||+
T Consensus 154 ~~~~~----~~~i~V~nk~ 168 (168)
T PF00350_consen 154 LDPDK----SRTIFVLNKA 168 (168)
T ss_dssp HTTTC----SSEEEEEE-G
T ss_pred hcCCC----CeEEEEEcCC
Confidence 44332 4699999985
No 192
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.45 E-value=1.2e-12 Score=112.62 Aligned_cols=119 Identities=18% Similarity=0.178 Sum_probs=74.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-------CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-------AGFTLNIVDTPGLIEGGYVNYHAIQLIK 112 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-------~g~~l~liDTPG~~~~~~~~~~~~~~i~ 112 (309)
+||+++|.+|+|||||++++.+... .....+..+.........+ ....+.||||+|..+. ..++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f-~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~--------~~l~ 71 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQV-LGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV--------KSTR 71 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH--------HHHH
Confidence 5899999999999999999998753 2122222111111112222 1246899999998432 1121
Q ss_pred -HhhhcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhC-----------------ccccCcEEEEEecccCCCCC
Q 021699 113 -RFLLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFG-----------------EQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 113 -~~~~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g-----------------~~~~~~~iiV~tk~D~~~~~ 170 (309)
.+. .++|++|+|++++... +... ..|+..+....+ .....|+++|+||.|+.+..
T Consensus 72 ~~~y--r~ad~iIlVyDvtn~~Sf~~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 72 AVFY--NQVNGIILVHDLTNRKSSQNL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred HHHh--CcCCEEEEEEECcChHHHHHH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence 122 6899999999986532 3332 467777755321 11236999999999986443
No 193
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.44 E-value=2.2e-12 Score=130.17 Aligned_cols=114 Identities=15% Similarity=0.119 Sum_probs=80.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
.+..|+++|.+++|||||+++|.+.++ ..+...+.|.+...+.+.+++..++||||||..++.. ... +..
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v-~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~---m~~----rga-- 358 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNV-AAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTA---MRA----RGA-- 358 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCc-cccccCceeeeccEEEEEECCEEEEEEECCCCccchh---HHH----hhh--
Confidence 568999999999999999999998765 2334445555555566777888999999999865421 111 111
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++|+|++.+. .......+.+..+.. .+ .|+|+|+||+|+.
T Consensus 359 ~~aDiaILVVdAdd-Gv~~qT~e~i~~a~~-~~----vPiIVviNKiDl~ 402 (787)
T PRK05306 359 QVTDIVVLVVAADD-GVMPQTIEAINHAKA-AG----VPIIVAINKIDKP 402 (787)
T ss_pred hhCCEEEEEEECCC-CCCHhHHHHHHHHHh-cC----CcEEEEEECcccc
Confidence 57899999988764 344444454444332 22 6899999999984
No 194
>PRK00049 elongation factor Tu; Reviewed
Probab=99.44 E-value=8.2e-12 Score=118.20 Aligned_cols=175 Identities=12% Similarity=0.100 Sum_probs=105.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCc------ccc---------cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKA------VTV---------STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~------~~~---------~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
...++|+++|..++|||||+++|++... ... ....+.|.+.....++.++..+.++||||+.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~--- 86 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA--- 86 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH---
Confidence 4579999999999999999999997310 000 0123445555555555677889999999983
Q ss_pred CCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEE-EEEecccCCCCCCCCHHHHHHh
Q 021699 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL-IVLTHAQLSLPDRLDYEVFCSK 180 (309)
Q Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~i-iV~tk~D~~~~~~~~~~~~~~~ 180 (309)
.+...+...+ ..+|++++|++.+. .+...+.+.+..+... + .|.+ +++||+|+.+. ++..+.
T Consensus 87 ----~f~~~~~~~~--~~aD~~llVVDa~~-g~~~qt~~~~~~~~~~-g----~p~iiVvvNK~D~~~~-----~~~~~~ 149 (396)
T PRK00049 87 ----DYVKNMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQV-G----VPYIVVFLNKCDMVDD-----EELLEL 149 (396)
T ss_pred ----HHHHHHHhhh--ccCCEEEEEEECCC-CCchHHHHHHHHHHHc-C----CCEEEEEEeecCCcch-----HHHHHH
Confidence 2222222222 58999999977653 4667777777666543 3 4654 68999998631 112222
Q ss_pred hhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCc---hHHHHHHHHHHHh
Q 021699 181 RSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW---IPNLVKTITEVVL 245 (309)
Q Consensus 181 ~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w---~~~L~~~i~~~~~ 245 (309)
....+++++.... +. ...+|++++++.. +.+. ....+| ++.|++.+...++
T Consensus 150 ~~~~i~~~l~~~~-~~-----~~~~~iv~iSa~~----g~~~----~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 150 VEMEVRELLSKYD-FP-----GDDTPIIRGSALK----ALEG----DDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHHHHHHhcC-CC-----ccCCcEEEeeccc----ccCC----CCcccccccHHHHHHHHHhcCC
Confidence 2245555554321 11 1247888887742 1110 112346 3678887776543
No 195
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=4.4e-13 Score=112.43 Aligned_cols=126 Identities=14% Similarity=0.106 Sum_probs=92.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
-|||+++|.+|+|||-|+-+++..+. .....+..+.+..+....++|+ +..||||+|..........+.
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF-~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYY-------- 84 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEF-SLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYY-------- 84 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhccccc-CcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhh--------
Confidence 58999999999999999988886653 3333344455666666777776 568999999965443332211
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
+++..+|+|++++.+.--+.-.+|+++|+.++..+ ..+++|.||+||.....+..++
T Consensus 85 -rgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~n--ivimLvGNK~DL~~lraV~te~ 141 (222)
T KOG0087|consen 85 -RGAVGALLVYDITRRQTFENVERWLKELRDHADSN--IVIMLVGNKSDLNHLRAVPTED 141 (222)
T ss_pred -cccceeEEEEechhHHHHHHHHHHHHHHHhcCCCC--eEEEEeecchhhhhccccchhh
Confidence 69999999999976443346677899998887665 5899999999997655555544
No 196
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.43 E-value=1.4e-11 Score=101.99 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=72.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
+||+++|.+|+|||||++++++.... ...+++ .........++| ..+.+|||+|..+ .. ..
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~--~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~---~~------ 63 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYV--QLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQ---FA------ 63 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCC--CCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----hh---HH------
Confidence 58999999999999999998876421 112221 222233455667 4688999999842 11 11
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++++.. ++... ..++..+....+. ...|+++|.||.|+.
T Consensus 64 ~~~~~~ilv~d~~~~~sf~~~-~~~~~~i~~~~~~-~~~piilvgnK~Dl~ 112 (158)
T cd04103 64 SWVDAVIFVFSLENEASFQTV-YNLYHQLSSYRNI-SEIPLILVGTQDAIS 112 (158)
T ss_pred hcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCC-CCCCEEEEeeHHHhh
Confidence 478999999988653 24333 3577777665431 226899999999974
No 197
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.42 E-value=8.1e-12 Score=106.99 Aligned_cols=116 Identities=18% Similarity=0.167 Sum_probs=69.8
Q ss_pred ceEEEEEeCCCCCHHHHHH-HHhCCCcc---cccCCCCCCC--eeEEEE--------eeeCC--eEEEEEeCCCCCCCCC
Q 021699 39 TLTILVMGKGGVGKSSTVN-SIIGEKAV---TVSTFQSEGP--RPVMVS--------RSRAG--FTLNIVDTPGLIEGGY 102 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN-~l~g~~~~---~~~~~~~~t~--~~~~~~--------~~~~g--~~l~liDTPG~~~~~~ 102 (309)
.+||+++|.+|||||||++ .+.+.... ......++.. ...... ..++| ..+.||||||..+.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4899999999999999996 44433210 0111111110 111111 12344 47899999998431
Q ss_pred CcHHHHHHHHHhhhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
. +. ....++|++++|++++.. ++......|+..+.+... . .|+++|+||+|+..
T Consensus 80 ~--------~~-~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgNK~DL~~ 134 (195)
T cd01873 80 D--------RR-FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-R--VPVILVGCKLDLRY 134 (195)
T ss_pred h--------hc-ccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhccc
Confidence 1 11 122699999999998643 233333346777765532 2 68999999999853
No 198
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.42 E-value=3.1e-12 Score=114.87 Aligned_cols=112 Identities=14% Similarity=0.136 Sum_probs=76.5
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCc-----cccc------------CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKA-----VTVS------------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 103 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~-----~~~~------------~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~ 103 (309)
+|+++|++|+|||||+|+|+.... ..+. ...+.|.......+.+++..+.+|||||..+..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~-- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT-- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH--
Confidence 589999999999999999974211 0111 112344455556677889999999999985421
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 104 ~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+....+ ..+|++++|++... .....+..+++.+.+. + +|+++++||+|+.
T Consensus 79 -~~~~~~l------~~aD~ailVVDa~~-g~~~~t~~~~~~~~~~-~----~p~ivviNK~D~~ 129 (270)
T cd01886 79 -IEVERSL------RVLDGAVAVFDAVA-GVEPQTETVWRQADRY-N----VPRIAFVNKMDRT 129 (270)
T ss_pred -HHHHHHH------HHcCEEEEEEECCC-CCCHHHHHHHHHHHHc-C----CCEEEEEECCCCC
Confidence 2222222 47899999976543 3556666777666543 2 6899999999985
No 199
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.42 E-value=1.9e-11 Score=106.87 Aligned_cols=113 Identities=12% Similarity=0.094 Sum_probs=73.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCC--------------CCCCC------------------------eeEEEEe
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTF--------------QSEGP------------------------RPVMVSR 82 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~--------------~~~t~------------------------~~~~~~~ 82 (309)
||+++|..++|||||++++..... ..+.. .+.|. .......
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~-~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGEL-DNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC 79 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCc-CCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence 589999999999999999985321 00000 00000 0000122
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEe
Q 021699 83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 162 (309)
Q Consensus 83 ~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~t 162 (309)
+..+..+.++||||..+ +.......+....+|++++|++++. .+...+.+++..+... + .|+++|+|
T Consensus 80 ~~~~~~i~liDtpG~~~-------~~~~~~~~~~~~~~D~~llVvda~~-g~~~~d~~~l~~l~~~-~----ip~ivvvN 146 (224)
T cd04165 80 EKSSKLVTFIDLAGHER-------YLKTTLFGLTGYAPDYAMLVVAANA-GIIGMTKEHLGLALAL-N----IPVFVVVT 146 (224)
T ss_pred eeCCcEEEEEECCCcHH-------HHHHHHHhhcccCCCEEEEEEECCC-CCcHHHHHHHHHHHHc-C----CCEEEEEE
Confidence 34577899999999732 2222222232247899999977653 4678888888877654 3 68999999
Q ss_pred cccCC
Q 021699 163 HAQLS 167 (309)
Q Consensus 163 k~D~~ 167 (309)
|+|+.
T Consensus 147 K~D~~ 151 (224)
T cd04165 147 KIDLA 151 (224)
T ss_pred Ccccc
Confidence 99986
No 200
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.42 E-value=2.3e-12 Score=114.38 Aligned_cols=120 Identities=23% Similarity=0.304 Sum_probs=88.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeE-EEEEeCCCCCCCCCCcH----HHHHHHHHhh
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT-LNIVDTPGLIEGGYVNY----HAIQLIKRFL 115 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~-l~liDTPG~~~~~~~~~----~~~~~i~~~~ 115 (309)
.|.+||-||+|||||+|+|..... .+.+++.||..|......+++.. ++|-|.||+.+....+. +.++-+
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHi---- 272 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHI---- 272 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHH----
Confidence 578999999999999999998875 78999999999988888777664 99999999998766554 344444
Q ss_pred hcCCCcEEEEEEeCCcccc-Ch--hHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 116 LNKTIDVLLYVDRLDVYRV-DN--LDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~-~~--~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+++.++||+++..... ++ .-..+..++...-..-..+|.++|.||+|+.
T Consensus 273 --ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 273 --ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred --HhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 58899999977764311 22 1222333333222223347899999999984
No 201
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.42 E-value=5e-12 Score=119.72 Aligned_cols=152 Identities=13% Similarity=0.068 Sum_probs=92.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCC------Cccc---------ccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGE------KAVT---------VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~------~~~~---------~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
...++|+++|..++|||||+++|++. ..+. .....+.|.+.....++.++..+.||||||..+
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~-- 87 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD-- 87 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH--
Confidence 35699999999999999999999843 1111 011245566665555666777899999999842
Q ss_pred CCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhh
Q 021699 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKR 181 (309)
Q Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~ 181 (309)
+...+.... ..+|++++|++++. .....+.+.+..+... +. +++|+|+||+|+.+. ++..+..
T Consensus 88 -----f~~~~~~~~--~~~D~~ilVvda~~-g~~~qt~e~l~~~~~~-gi---~~iIvvvNK~Dl~~~-----~~~~~~~ 150 (394)
T TIGR00485 88 -----YVKNMITGA--AQMDGAILVVSATD-GPMPQTREHILLARQV-GV---PYIVVFLNKCDMVDD-----EELLELV 150 (394)
T ss_pred -----HHHHHHHHH--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CEEEEEEEecccCCH-----HHHHHHH
Confidence 212121111 47899999977653 3556666666665443 31 345578999998632 2222222
Q ss_pred hHHHHHhhcccccccccccccCCCcEEEeccc
Q 021699 182 SEALLKFVSPSTWMKKKDIQGSFVPVVLVENS 213 (309)
Q Consensus 182 ~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~ 213 (309)
.+.++++++... + ....+|++++|+.
T Consensus 151 ~~~i~~~l~~~~-~-----~~~~~~ii~vSa~ 176 (394)
T TIGR00485 151 EMEVRELLSEYD-F-----PGDDTPIIRGSAL 176 (394)
T ss_pred HHHHHHHHHhcC-C-----CccCccEEECccc
Confidence 345555554321 1 1123788888763
No 202
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.42 E-value=8.7e-12 Score=123.68 Aligned_cols=163 Identities=15% Similarity=0.093 Sum_probs=97.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcc--cccCCCCCCCeeEEEEee-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAV--TVSTFQSEGPRPVMVSRS-RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~--~~~~~~~~t~~~~~~~~~-~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+-|+++|..++|||||+|+|+|.+.. ......+.|.+....... .++..+.||||||..+ +...+...+
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-------fi~~m~~g~- 72 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-------FLSNMLAGV- 72 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-------HHHHHHHHh-
Confidence 35899999999999999999986421 111223444333222222 2567899999999822 222221112
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccccc
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMK 196 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 196 (309)
.++|++++|++.+. .+.+.+.+.+..+.. .|. .++++|+||+|+.+++ ......+.+++.+... .+
T Consensus 73 -~~~D~~lLVVda~e-g~~~qT~ehl~il~~-lgi---~~iIVVlNKiDlv~~~------~~~~v~~ei~~~l~~~-~~- 138 (614)
T PRK10512 73 -GGIDHALLVVACDD-GVMAQTREHLAILQL-TGN---PMLTVALTKADRVDEA------RIAEVRRQVKAVLREY-GF- 138 (614)
T ss_pred -hcCCEEEEEEECCC-CCcHHHHHHHHHHHH-cCC---CeEEEEEECCccCCHH------HHHHHHHHHHHHHHhc-CC-
Confidence 58999999988764 455667777765543 342 3468999999986321 1111234455554322 11
Q ss_pred ccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021699 197 KKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 197 ~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
...|++++|+. ++.+ ++.|.+.+.....
T Consensus 139 ------~~~~ii~VSA~----tG~g-----------I~~L~~~L~~~~~ 166 (614)
T PRK10512 139 ------AEAKLFVTAAT----EGRG-----------IDALREHLLQLPE 166 (614)
T ss_pred ------CCCcEEEEeCC----CCCC-----------CHHHHHHHHHhhc
Confidence 12688888774 3333 5677777665443
No 203
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.42 E-value=1.4e-11 Score=107.51 Aligned_cols=112 Identities=13% Similarity=0.201 Sum_probs=70.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCC---------------CCCCCeeEEEEeeeC----------CeEEEEEeCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTF---------------QSEGPRPVMVSRSRA----------GFTLNIVDTP 95 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~---------------~~~t~~~~~~~~~~~----------g~~l~liDTP 95 (309)
+|+++|..++|||||+++|+.......... .+.|.........+. +..+.|||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999986532111110 111222211222222 5689999999
Q ss_pred CCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 96 GLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 96 G~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
|..+.. .+....+ ..+|++++|+++.. .........++..... + .|+++|+||+|+.
T Consensus 82 G~~~f~---~~~~~~l------~~aD~~ilVvD~~~-g~~~~t~~~l~~~~~~-~----~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFS---SEVTAAL------RLCDGALVVVDAVE-GVCVQTETVLRQALKE-R----VKPVLVINKIDRL 138 (222)
T ss_pred CccccH---HHHHHHH------HhcCeeEEEEECCC-CCCHHHHHHHHHHHHc-C----CCEEEEEECCCcc
Confidence 996532 2333333 58899999987754 3555555555554432 2 6899999999974
No 204
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.41 E-value=5.8e-12 Score=124.10 Aligned_cols=114 Identities=16% Similarity=0.096 Sum_probs=77.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+.+|+++|.+|+|||||+|+|.+.... ....++.|.+.......+.+. .+.||||||..++... ..+.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~-------r~rg-- 155 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSM-------RARG-- 155 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcc-cccCCceeecceEEEEEECCCcEEEEEECCCCcchhhH-------HHhh--
Confidence 5689999999999999999999987653 333445555555555556444 8999999998543211 1111
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
...+|++++|++.+. .......+.+..+.. .+ .|+++++||+|+.
T Consensus 156 a~~aDiaILVVda~d-gv~~qT~e~i~~~~~-~~----vPiIVviNKiDl~ 200 (587)
T TIGR00487 156 AKVTDIVVLVVAADD-GVMPQTIEAISHAKA-AN----VPIIVAINKIDKP 200 (587)
T ss_pred hccCCEEEEEEECCC-CCCHhHHHHHHHHHH-cC----CCEEEEEECcccc
Confidence 158899999987764 233444444443322 22 6899999999984
No 205
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.41 E-value=8.4e-12 Score=120.51 Aligned_cols=120 Identities=16% Similarity=0.105 Sum_probs=76.1
Q ss_pred cCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccC--------------------------------CCCCCCeeEEEEe
Q 021699 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST--------------------------------FQSEGPRPVMVSR 82 (309)
Q Consensus 35 ~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~--------------------------------~~~~t~~~~~~~~ 82 (309)
+....++|+++|..++|||||+++|+......... ..+.|.+.....+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 34567999999999999999999999654322110 0112333334445
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEe
Q 021699 83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 162 (309)
Q Consensus 83 ~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~t 162 (309)
+.++..+.||||||..+ +...+...+ ..+|++++|++.+. .+...+.+.+..+ ...+. +++|+|+|
T Consensus 103 ~~~~~~i~~iDTPGh~~-------f~~~~~~~l--~~aD~allVVDa~~-G~~~qt~~~~~l~-~~lg~---~~iIvvvN 168 (474)
T PRK05124 103 STEKRKFIIADTPGHEQ-------YTRNMATGA--STCDLAILLIDARK-GVLDQTRRHSFIA-TLLGI---KHLVVAVN 168 (474)
T ss_pred ccCCcEEEEEECCCcHH-------HHHHHHHHH--hhCCEEEEEEECCC-CccccchHHHHHH-HHhCC---CceEEEEE
Confidence 56778999999999632 211121112 68999999977653 3444444433333 33342 57999999
Q ss_pred cccCCC
Q 021699 163 HAQLSL 168 (309)
Q Consensus 163 k~D~~~ 168 (309)
|+|+..
T Consensus 169 KiD~~~ 174 (474)
T PRK05124 169 KMDLVD 174 (474)
T ss_pred eecccc
Confidence 999863
No 206
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.41 E-value=6.1e-12 Score=110.95 Aligned_cols=128 Identities=14% Similarity=0.127 Sum_probs=81.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccc--c---------C------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTV--S---------T------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 103 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~--~---------~------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~ 103 (309)
+|+++|++|+|||||+++|+....... + + ..+.+.........+++.++.+|||||..+..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~-- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI-- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH--
Confidence 589999999999999999986432111 0 0 01112223345566788899999999995432
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhH
Q 021699 104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSE 183 (309)
Q Consensus 104 ~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~ 183 (309)
......+ ..+|++++|++... ........+++.+.+. + .|+++++||+|+... ++++.+ +
T Consensus 79 -~~~~~~l------~~aD~~IlVvd~~~-g~~~~~~~~~~~~~~~-~----~P~iivvNK~D~~~a---~~~~~~----~ 138 (237)
T cd04168 79 -AEVERSL------SVLDGAILVISAVE-GVQAQTRILWRLLRKL-N----IPTIIFVNKIDRAGA---DLEKVY----Q 138 (237)
T ss_pred -HHHHHHH------HHhCeEEEEEeCCC-CCCHHHHHHHHHHHHc-C----CCEEEEEECccccCC---CHHHHH----H
Confidence 2222233 47899999977643 3445555666655443 3 689999999998532 344443 4
Q ss_pred HHHHhhc
Q 021699 184 ALLKFVS 190 (309)
Q Consensus 184 ~l~~~i~ 190 (309)
.+++.+.
T Consensus 139 ~i~~~~~ 145 (237)
T cd04168 139 EIKEKLS 145 (237)
T ss_pred HHHHHHC
Confidence 4555554
No 207
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.40 E-value=4e-12 Score=110.82 Aligned_cols=115 Identities=15% Similarity=0.131 Sum_probs=73.5
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCccc------------------------c------cCCCCCCCeeEEEEeeeCCeEEE
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVT------------------------V------STFQSEGPRPVMVSRSRAGFTLN 90 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~------------------------~------~~~~~~t~~~~~~~~~~~g~~l~ 90 (309)
+|+++|..|+|||||+.+|+...... . ....+.|.+.....+.+++..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999997321100 0 01234566666677788999999
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCcc------ccChhHHHHHHHHHHHhCccccCcEEEEEecc
Q 021699 91 IVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY------RVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 91 liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~------~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~ 164 (309)
+|||||+.+. .......+ ..+|++++|++.... .........+... ...+. +|+++|+||+
T Consensus 81 liDtpG~~~~---~~~~~~~~------~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~iiivvNK~ 147 (219)
T cd01883 81 ILDAPGHRDF---VPNMITGA------SQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLGV---KQLIVAVNKM 147 (219)
T ss_pred EEECCChHHH---HHHHHHHh------hhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcCC---CeEEEEEEcc
Confidence 9999997321 11222222 579999999776542 1222333333333 23332 5899999999
Q ss_pred cCCC
Q 021699 165 QLSL 168 (309)
Q Consensus 165 D~~~ 168 (309)
|+..
T Consensus 148 Dl~~ 151 (219)
T cd01883 148 DDVT 151 (219)
T ss_pred cccc
Confidence 9863
No 208
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.40 E-value=4.2e-12 Score=127.05 Aligned_cols=118 Identities=12% Similarity=0.084 Sum_probs=76.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccC----------CCC----------------------CCCeeEEEEeee
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST----------FQS----------------------EGPRPVMVSRSR 84 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~----------~~~----------------------~t~~~~~~~~~~ 84 (309)
.+.++|+++|.+++|||||+|+|+.......+. ..+ .|.+.....++.
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 356999999999999999999999765433211 122 233333345556
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecc
Q 021699 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 85 ~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~ 164 (309)
++..+.|+||||..+ +...+... ...+|++++|++.+. .+...+.+.+..+.. .+. +++++|+||+
T Consensus 102 ~~~~~~liDtPG~~~-------f~~~~~~~--~~~aD~~llVvda~~-g~~~~t~e~~~~~~~-~~~---~~iivvvNK~ 167 (632)
T PRK05506 102 PKRKFIVADTPGHEQ-------YTRNMVTG--ASTADLAIILVDARK-GVLTQTRRHSFIASL-LGI---RHVVLAVNKM 167 (632)
T ss_pred CCceEEEEECCChHH-------HHHHHHHH--HHhCCEEEEEEECCC-CccccCHHHHHHHHH-hCC---CeEEEEEEec
Confidence 778899999999732 11111111 258999999977653 344444444444333 232 5789999999
Q ss_pred cCCC
Q 021699 165 QLSL 168 (309)
Q Consensus 165 D~~~ 168 (309)
|+.+
T Consensus 168 D~~~ 171 (632)
T PRK05506 168 DLVD 171 (632)
T ss_pred cccc
Confidence 9863
No 209
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.39 E-value=4.1e-12 Score=102.06 Aligned_cols=126 Identities=17% Similarity=0.094 Sum_probs=84.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+++|.+|+|||||+-++.....-.. .....+.+.......++|. ++.||||+|...+......++
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~-~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyy-------- 81 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDL-HPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYY-------- 81 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCcc-CCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHh--------
Confidence 59999999999999999999887643111 1111234555556666665 689999999976655554433
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021699 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
+++..+|+|++++.. .+... -.|++++.-..-. ...-.++|.||+|......++.+|
T Consensus 82 -RgaqGiIlVYDVT~Rdtf~kL-d~W~~Eld~Ystn-~diikmlVgNKiDkes~R~V~reE 139 (209)
T KOG0080|consen 82 -RGAQGIILVYDVTSRDTFVKL-DIWLKELDLYSTN-PDIIKMLVGNKIDKESERVVDREE 139 (209)
T ss_pred -ccCceeEEEEEccchhhHHhH-HHHHHHHHhhcCC-ccHhHhhhcccccchhcccccHHH
Confidence 689999999998753 25444 4577777655432 223457899999964444444443
No 210
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.39 E-value=6.1e-12 Score=116.38 Aligned_cols=132 Identities=14% Similarity=0.190 Sum_probs=91.3
Q ss_pred HHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC----Ccc-----------cccCCCC---CCCeeEE---EEeee--
Q 021699 28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE----KAV-----------TVSTFQS---EGPRPVM---VSRSR-- 84 (309)
Q Consensus 28 ~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~----~~~-----------~~~~~~~---~t~~~~~---~~~~~-- 84 (309)
+.+.+.++....+.|.|+|+.++|||||||++.+. +.. .+++.++ +|.+|.. ...++
T Consensus 6 iykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~ 85 (492)
T TIGR02836 6 IYKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEINI 85 (492)
T ss_pred HHHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEec
Confidence 45556666666799999999999999999999998 665 5667777 6777765 22222
Q ss_pred C---CeEEEEEeCCCCCCCCCCcHHHHHH----------------------HHHhhhcCCCcEEEEEEeCCc-------c
Q 021699 85 A---GFTLNIVDTPGLIEGGYVNYHAIQL----------------------IKRFLLNKTIDVLLYVDRLDV-------Y 132 (309)
Q Consensus 85 ~---g~~l~liDTPG~~~~~~~~~~~~~~----------------------i~~~~~~~~~d~il~v~~~d~-------~ 132 (309)
. ..++.+|||+|+.+.+.....-.+. .++.+. .++++.|+|.- |+ .
T Consensus 86 ~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~-dhstIgivVtT-Dgsi~dI~Re 163 (492)
T TIGR02836 86 NEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQ-EHSTIGVVVTT-DGTITDIPRE 163 (492)
T ss_pred cCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHH-hcCcEEEEEEc-CCCccccccc
Confidence 1 2489999999998754332211111 122221 37888888831 33 2
Q ss_pred ccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021699 133 RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 133 ~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
...+.+.++++.|++.- +|+++|+|++|-
T Consensus 164 ~y~~aEe~~i~eLk~~~-----kPfiivlN~~dp 192 (492)
T TIGR02836 164 DYVEAEERVIEELKELN-----KPFIILLNSTHP 192 (492)
T ss_pred cchHHHHHHHHHHHhcC-----CCEEEEEECcCC
Confidence 35677888998888763 899999999994
No 211
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.7e-11 Score=97.36 Aligned_cols=118 Identities=17% Similarity=0.174 Sum_probs=83.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
++|+++|..|+|||.|+..++..- ++.+.....+.+....+.+++|. ++.||||+|...+...... +.
T Consensus 8 fkivlvgnagvgktclvrrftqgl-fppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqs-------yy-- 77 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQS-------YY-- 77 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccC-CCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHH-------Hh--
Confidence 899999999999999999998763 34444444445555556666665 6899999999544333222 22
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
+.+|++++|+++......+--.+|+.++.+..... .-.|+|.||.|+.+.
T Consensus 78 rsahalilvydiscqpsfdclpewlreie~yan~k--vlkilvgnk~d~~dr 127 (213)
T KOG0095|consen 78 RSAHALILVYDISCQPSFDCLPEWLREIEQYANNK--VLKILVGNKIDLADR 127 (213)
T ss_pred hhcceEEEEEecccCcchhhhHHHHHHHHHHhhcc--eEEEeeccccchhhh
Confidence 57899999998876433344567999998876543 356899999998643
No 212
>PLN00023 GTP-binding protein; Provisional
Probab=99.39 E-value=6.5e-12 Score=114.06 Aligned_cols=122 Identities=18% Similarity=0.202 Sum_probs=76.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---------------CeEEEEEeCCCCCCCCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---------------GFTLNIVDTPGLIEGGY 102 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---------------g~~l~liDTPG~~~~~~ 102 (309)
..+||+|+|..|||||||++.+.+... .....+..+.......+.++ ...+.||||+|......
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F-~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSS-IARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCc-ccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 469999999999999999999998753 21112222222222222322 24689999999843322
Q ss_pred CcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCc----------cccCcEEEEEecccCCCC
Q 021699 103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE----------QIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~----------~~~~~~iiV~tk~D~~~~ 169 (309)
.. ..++ .++|++|+|++++.......-..|++.+...... ....++++|.||+|+...
T Consensus 99 L~-------~~yy--r~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 99 CR-------SLFY--SQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hh-------HHhc--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 11 1122 6899999998886533222334577777665320 112689999999998643
No 213
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.38 E-value=8e-12 Score=118.68 Aligned_cols=172 Identities=16% Similarity=0.156 Sum_probs=98.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCccccc--------------------------C------CCCCCCeeEEEEeeeCCe
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVS--------------------------T------FQSEGPRPVMVSRSRAGF 87 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~--------------------------~------~~~~t~~~~~~~~~~~g~ 87 (309)
++|+++|+.++|||||+++|+........ + ..+.|.+.....++.++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 68999999999999999999854321111 0 112244455555667788
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+.|+||||..+ +...+...+ ..+|++|+|++.+. .+...+.+.+..+.. .+. +++++|+||+|+.
T Consensus 81 ~~~liDtPGh~~-------f~~~~~~~~--~~aD~allVVda~~-G~~~qt~~~~~~~~~-~~~---~~iivviNK~D~~ 146 (406)
T TIGR02034 81 KFIVADTPGHEQ-------YTRNMATGA--STADLAVLLVDARK-GVLEQTRRHSYIASL-LGI---RHVVLAVNKMDLV 146 (406)
T ss_pred EEEEEeCCCHHH-------HHHHHHHHH--hhCCEEEEEEECCC-CCccccHHHHHHHHH-cCC---CcEEEEEEecccc
Confidence 999999999732 222222212 58999999977653 344555554444433 332 5789999999986
Q ss_pred CCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCch--HHHHHHHHH
Q 021699 168 LPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWI--PNLVKTITE 242 (309)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~--~~L~~~i~~ 242 (309)
..+ ++.++...+.+.++++.. .+ ..+|++++|+. ++.+... +.+..+|. +.|++.+..
T Consensus 147 ~~~----~~~~~~i~~~~~~~~~~~-~~-------~~~~iipiSA~----~g~ni~~-~~~~~~wy~g~tL~~~L~~ 206 (406)
T TIGR02034 147 DYD----EEVFENIKKDYLAFAEQL-GF-------RDVTFIPLSAL----KGDNVVS-RSESMPWYSGPTLLEILET 206 (406)
T ss_pred cch----HHHHHHHHHHHHHHHHHc-CC-------CCccEEEeecc----cCCCCcc-cccCCCccchhHHHHHHHh
Confidence 322 222222234444444322 11 13678888763 3333322 22334573 445554443
No 214
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.38 E-value=1.4e-11 Score=117.91 Aligned_cols=178 Identities=15% Similarity=0.188 Sum_probs=100.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccc------------------------------cCCCCCCCeeEEEEeeeCC
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTV------------------------------STFQSEGPRPVMVSRSRAG 86 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~------------------------------~~~~~~t~~~~~~~~~~~g 86 (309)
...++|+++|..++|||||+++|+....... ....+.|.+.....+..++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 3579999999999999999999985321110 0122445555566667788
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc--cChhHHHHHHHHHHHhCccccCcEEEEEecc
Q 021699 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR--VDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~--~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~ 164 (309)
..+.||||||..+ +...+...+ ..+|++++|++.+... ........+. +.+.++. .++++|+||+
T Consensus 85 ~~i~iiDtpGh~~-------f~~~~~~~~--~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~~---~~iIVviNK~ 151 (426)
T TIGR00483 85 YEVTIVDCPGHRD-------FIKNMITGA--SQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLGI---NQLIVAINKM 151 (426)
T ss_pred eEEEEEECCCHHH-------HHHHHHhhh--hhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcCC---CeEEEEEECh
Confidence 8999999999732 222222121 5799999998876432 1122222222 2233332 5799999999
Q ss_pred cCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCch--HHHHHHHHH
Q 021699 165 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWI--PNLVKTITE 242 (309)
Q Consensus 165 D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~--~~L~~~i~~ 242 (309)
|+...+. +.+ +...+.++++++... +. ...+|++.+|+. ++.+..... ....|. +.|++.+..
T Consensus 152 Dl~~~~~---~~~-~~~~~ei~~~~~~~g-~~-----~~~~~~i~iSA~----~g~ni~~~~-~~~~w~~g~~l~~~l~~ 216 (426)
T TIGR00483 152 DSVNYDE---EEF-EAIKKEVSNLIKKVG-YN-----PDTVPFIPISAW----NGDNVIKKS-ENTPWYKGKTLLEALDA 216 (426)
T ss_pred hccCccH---HHH-HHHHHHHHHHHHHcC-CC-----cccceEEEeecc----ccccccccc-cCCccccchHHHHHHhc
Confidence 9863222 211 112244555554321 11 123677777763 333333221 123564 456666654
No 215
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.37 E-value=1.2e-11 Score=98.87 Aligned_cols=114 Identities=18% Similarity=0.155 Sum_probs=66.5
Q ss_pred EEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCc
Q 021699 44 VMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 121 (309)
Q Consensus 44 vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d 121 (309)
++|.+|+|||||+|++++.... ......+........... .+..+.+|||||..+..... ..+. ..+|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~~~~--~~~~ 70 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLR-------RLYY--RGAD 70 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC-CcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHH-------HHHh--cCCC
Confidence 5899999999999999998642 111112222222222222 35689999999985432211 1111 6899
Q ss_pred EEEEEEeCCccccChhHHHHH--HHHHHHhCccccCcEEEEEecccCCCCC
Q 021699 122 VLLYVDRLDVYRVDNLDKQIT--RAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 122 ~il~v~~~d~~~~~~~d~~~l--~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
++++|+++.... +..+.... ..+.. ......|+++|+||+|+....
T Consensus 71 ~~i~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~ivv~nk~D~~~~~ 118 (157)
T cd00882 71 GIILVYDVTDRE-SFENVKEWLLLILIN--KEGENIPIILVGNKIDLPEER 118 (157)
T ss_pred EEEEEEECcCHH-HHHHHHHHHHHHHHh--hccCCCcEEEEEecccccccc
Confidence 999997775421 11111111 11111 122337999999999986443
No 216
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.36 E-value=1.5e-11 Score=101.14 Aligned_cols=120 Identities=18% Similarity=0.203 Sum_probs=79.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...|||+++|.+|+|||||.|.+...+. ........+.+..+..+.++++ .+.||||+|...+....- .|
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF-~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~-------aF 78 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKF-SQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGV-------AF 78 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHH-HHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhccc-------ce
Confidence 3569999999999999999999998753 2223333345555555666665 679999999954433221 11
Q ss_pred hhcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhC--ccccCcEEEEEecccCC
Q 021699 115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLS 167 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g--~~~~~~~iiV~tk~D~~ 167 (309)
.+++|+|++|++++... +...+ .|-+++..... ....-|+|+++||.|..
T Consensus 79 --YRgaDcCvlvydv~~~~Sfe~L~-~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~ 131 (210)
T KOG0394|consen 79 --YRGADCCVLVYDVNNPKSFENLE-NWRKEFLIQASPQDPETFPFVILGNKIDVD 131 (210)
T ss_pred --ecCCceEEEEeecCChhhhccHH-HHHHHHHHhcCCCCCCcccEEEEcccccCC
Confidence 26999999999987543 43333 34444333333 12335899999999984
No 217
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.36 E-value=2.4e-11 Score=121.80 Aligned_cols=114 Identities=11% Similarity=0.079 Sum_probs=75.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEe--ee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR--SR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKR 113 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~--~~--~g~~l~liDTPG~~~~~~~~~~~~~~i~~ 113 (309)
.+.+|+|+|.+|+|||||+++|.+.... .+..++.|.....+.. .. .+..+.||||||..++ .....+
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~-~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F-------~~mr~r 314 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIA-QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAF-------SSMRSR 314 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCc-cccCCccccccceEEEEEEecCCceEEEEEECCcHHHH-------HHHHHH
Confidence 5679999999999999999999987642 2333344443323332 22 3578999999998321 111222
Q ss_pred hhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 114 ~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+ ..+|++++|++++. +......+.+..+.. . ..|+|+|+||+|+.
T Consensus 315 g~--~~aDiaILVVDA~d-Gv~~QT~E~I~~~k~-~----~iPiIVViNKiDl~ 360 (742)
T CHL00189 315 GA--NVTDIAILIIAADD-GVKPQTIEAINYIQA-A----NVPIIVAINKIDKA 360 (742)
T ss_pred HH--HHCCEEEEEEECcC-CCChhhHHHHHHHHh-c----CceEEEEEECCCcc
Confidence 22 58899999987754 344444555554432 2 26999999999985
No 218
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=2.5e-11 Score=99.96 Aligned_cols=127 Identities=16% Similarity=0.118 Sum_probs=85.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
-+|++++|.+|||||.|+-.++....-++.+ ...+.+.....++++++ ++.||||+|... ..+..+.+.
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd-~TiGvefg~r~~~id~k~IKlqiwDtaGqe~-------frsv~~syY- 76 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD-LTIGVEFGARMVTIDGKQIKLQIWDTAGQES-------FRSVTRSYY- 76 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcccccc-ceeeeeeceeEEEEcCceEEEEEEecCCcHH-------HHHHHHHHh-
Confidence 4899999999999999999999886433332 22223333334445554 789999999932 223333344
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHH
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF 177 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~ 177 (309)
+++-.+|+|++++...-...-..||..+++...++ .-++++.||+|+....+++.+|-
T Consensus 77 -r~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~N--mvImLiGNKsDL~~rR~Vs~EEG 134 (216)
T KOG0098|consen 77 -RGAAGALLVYDITRRESFNHLTSWLEDARQHSNEN--MVIMLIGNKSDLEARREVSKEEG 134 (216)
T ss_pred -ccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCC--cEEEEEcchhhhhccccccHHHH
Confidence 58888999999986432244456888887775443 46788899999976666555543
No 219
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.35 E-value=3e-11 Score=108.38 Aligned_cols=113 Identities=12% Similarity=0.138 Sum_probs=72.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccc---------------cCCC------CCCCeeEEEEeeeCCeEEEEEeCCCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTV---------------STFQ------SEGPRPVMVSRSRAGFTLNIVDTPGLI 98 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~---------------~~~~------~~t~~~~~~~~~~~g~~l~liDTPG~~ 98 (309)
-+|+++|.+|+|||||+|+|+....... .+.. +.+.......+++++.++.+|||||..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 3799999999999999999985422111 1100 111223344567789999999999985
Q ss_pred CCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 99 ~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+.. .+....+ ..+|++++|++... .+......+++.... .+ .|+++++||+|..
T Consensus 83 df~---~~~~~~l------~~aD~~IlVvda~~-g~~~~~~~i~~~~~~-~~----~P~iivvNK~D~~ 136 (267)
T cd04169 83 DFS---EDTYRTL------TAVDSAVMVIDAAK-GVEPQTRKLFEVCRL-RG----IPIITFINKLDRE 136 (267)
T ss_pred HHH---HHHHHHH------HHCCEEEEEEECCC-CccHHHHHHHHHHHh-cC----CCEEEEEECCccC
Confidence 422 2222223 47899999977643 344444445444332 22 6899999999974
No 220
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.35 E-value=4.7e-11 Score=117.96 Aligned_cols=176 Identities=14% Similarity=0.171 Sum_probs=104.7
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCccccc---------------CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVS---------------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY 105 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~---------------~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~ 105 (309)
+|+++|..++|||||+++|+........ ...+.|.......+.+++..+.||||||..++. .
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~---~ 79 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG---G 79 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH---H
Confidence 7999999999999999999953211100 112344455556677889999999999985432 1
Q ss_pred HHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHH
Q 021699 106 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEAL 185 (309)
Q Consensus 106 ~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l 185 (309)
+....+ ..+|++++|++... ........++..+... + .|+++|+||+|+... ..++.. +.+
T Consensus 80 ev~~~l------~~aD~alLVVDa~~-G~~~qT~~~l~~a~~~-~----ip~IVviNKiD~~~a---~~~~v~----~ei 140 (594)
T TIGR01394 80 EVERVL------GMVDGVLLLVDASE-GPMPQTRFVLKKALEL-G----LKPIVVINKIDRPSA---RPDEVV----DEV 140 (594)
T ss_pred HHHHHH------HhCCEEEEEEeCCC-CCcHHHHHHHHHHHHC-C----CCEEEEEECCCCCCc---CHHHHH----HHH
Confidence 222222 57899999977643 3445566666665542 2 689999999997422 233333 233
Q ss_pred HHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021699 186 LKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 186 ~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
.+++.... ... ....+|++++++........ +.....-+..|++.|...++..
T Consensus 141 ~~l~~~~g-~~~---e~l~~pvl~~SA~~g~~~~~-----~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 141 FDLFAELG-ADD---EQLDFPIVYASGRAGWASLD-----LDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred HHHHHhhc-ccc---ccccCcEEechhhcCccccc-----CcccccCHHHHHHHHHHhCCCC
Confidence 33332111 000 11237888887742211110 0111123788888888887654
No 221
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.35 E-value=2.3e-11 Score=104.80 Aligned_cols=116 Identities=18% Similarity=0.207 Sum_probs=65.7
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEee--eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS--RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~--~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
+|+++|.+|+|||||++.|.+.....+ .++++......... ..+..+.||||||.... .... ..++ .
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t--~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~---~~~~----~~~~--~ 70 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRST--VTSIEPNVATFILNSEGKGKKFRLVDVPGHPKL---RDKL----LETL--K 70 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc--cCcEeecceEEEeecCCCCceEEEEECCCCHHH---HHHH----HHHH--h
Confidence 689999999999999999998753221 22221111111111 23668999999998432 1122 2222 3
Q ss_pred CC-cEEEEEEeCCccc--cChhHHHHHHH-HHHHhCccccCcEEEEEecccCCC
Q 021699 119 TI-DVLLYVDRLDVYR--VDNLDKQITRA-ITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 119 ~~-d~il~v~~~d~~~--~~~~d~~~l~~-l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.+ ++++||++..... +... ..++.. +..........|+++|.||+|+..
T Consensus 71 ~~~~~vV~VvD~~~~~~~~~~~-~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 71 NSAKGIVFVVDSATFQKNLKDV-AEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ccCCEEEEEEECccchhHHHHH-HHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 44 9999997765321 1111 122222 211111111279999999999864
No 222
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.35 E-value=1.5e-11 Score=110.46 Aligned_cols=112 Identities=15% Similarity=0.254 Sum_probs=71.7
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCccc--ccCC---------------CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVT--VSTF---------------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 103 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~--~~~~---------------~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~ 103 (309)
+|+++|.+|+|||||+|+|++..... .+.. .+.+.........+++..+.+|||||..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f--- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF--- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH---
Confidence 58999999999999999998643211 0000 012223334456678889999999998432
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 104 ~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.......+ ..+|++++|++.+. ........+++.+... + .|.++|+||+|..
T Consensus 78 ~~~~~~~l------~~aD~~i~Vvd~~~-g~~~~~~~~~~~~~~~-~----~p~iivvNK~D~~ 129 (268)
T cd04170 78 VGETRAAL------RAADAALVVVSAQS-GVEVGTEKLWEFADEA-G----IPRIIFINKMDRE 129 (268)
T ss_pred HHHHHHHH------HHCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-C----CCEEEEEECCccC
Confidence 11222222 47899999977653 2334444555544332 2 6899999999975
No 223
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.34 E-value=3.8e-11 Score=118.21 Aligned_cols=113 Identities=13% Similarity=0.063 Sum_probs=70.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee------------------CCeEEEEEeCCCCCCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR------------------AGFTLNIVDTPGLIEG 100 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~------------------~g~~l~liDTPG~~~~ 100 (309)
+.-|+++|++|+|||||+|+|.+..... ....+.|.+........ ....+.||||||..++
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~-~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAK-REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccccc-ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 3569999999999999999999986422 11122232211111110 1124899999998432
Q ss_pred CCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.. ....+. ..+|++++|++++. .+...+.+.+..+... + .|+++|+||+|+.
T Consensus 83 ~~-------l~~~~~--~~aD~~IlVvD~~~-g~~~qt~e~i~~l~~~-~----vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 83 TN-------LRKRGG--ALADLAILIVDINE-GFKPQTQEALNILRMY-K----TPFVVAANKIDRI 134 (590)
T ss_pred HH-------HHHHHH--hhCCEEEEEEECCc-CCCHhHHHHHHHHHHc-C----CCEEEEEECCCcc
Confidence 11 111122 58999999988764 3455566666555432 2 6899999999985
No 224
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.34 E-value=2.9e-11 Score=104.91 Aligned_cols=112 Identities=16% Similarity=0.189 Sum_probs=67.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCccccc---C---------------CCCCCCeeEEEEeee-----CCeEEEEEeCCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVS---T---------------FQSEGPRPVMVSRSR-----AGFTLNIVDTPGL 97 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~---~---------------~~~~t~~~~~~~~~~-----~g~~l~liDTPG~ 97 (309)
+|+++|..|+|||||+++|++....... . ..+.+.........+ ....+.+|||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999975432110 0 011111111222222 2357999999999
Q ss_pred CCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 98 IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 98 ~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+. .......+ ..+|++++|++... ..+..+..+++.+... + .|+++|+||+|..
T Consensus 82 ~~f---~~~~~~~~------~~aD~~llVvD~~~-~~~~~~~~~~~~~~~~-~----~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNF---MDEVAAAL------RLSDGVVLVVDVVE-GVTSNTERLIRHAILE-G----LPIVLVINKIDRL 136 (213)
T ss_pred cch---HHHHHHHH------HhCCEEEEEEECCC-CCCHHHHHHHHHHHHc-C----CCEEEEEECcccC
Confidence 643 12222222 48899999977643 2334444444443321 1 6999999999986
No 225
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.34 E-value=4.7e-11 Score=104.93 Aligned_cols=124 Identities=23% Similarity=0.376 Sum_probs=75.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEE-------------------------------------
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV------------------------------------- 80 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~------------------------------------- 80 (309)
...+|+|+|.+|+||||++++|+|......+. ..+|+.+...
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~-g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCC-CcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 44689999999999999999999975322221 1112211110
Q ss_pred ------------Eeee---CCeEEEEEeCCCCCCCCC------CcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhH-
Q 021699 81 ------------SRSR---AGFTLNIVDTPGLIEGGY------VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD- 138 (309)
Q Consensus 81 ------------~~~~---~g~~l~liDTPG~~~~~~------~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d- 138 (309)
.+++ +..+++||||||+..... ....+.+.+..++. ...+++|+|++... .+...+
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~-~~~~IIL~Vvda~~-d~~~~d~ 181 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFIS-KEECLILAVTPANV-DLANSDA 181 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHh-CccCeEEEEEECCC-CCCchhH
Confidence 0111 113589999999964311 11233334445553 24468888865532 355555
Q ss_pred HHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 139 KQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 139 ~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
.++.+.+... + +++++|+||+|..++
T Consensus 182 l~ia~~ld~~-~----~rti~ViTK~D~~~~ 207 (240)
T smart00053 182 LKLAKEVDPQ-G----ERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHHHHc-C----CcEEEEEECCCCCCc
Confidence 4666666543 2 799999999998744
No 226
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.33 E-value=1e-10 Score=101.47 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=69.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEe--eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR--SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~--~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...+||+++|.+|+|||||+++++.... .....++.........+ ..+...+.+|||||..+..... ..+
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~-------~~~ 78 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEF-EKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLR-------DGY 78 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhh-------HHH
Confidence 4569999999999999999986654432 11111221222222222 2234588999999974322111 111
Q ss_pred hhcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
. ..+|++++|++++... + ..-..++..+.+... . .|+++|+||+|+.
T Consensus 79 ~--~~~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-~--~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 79 Y--IKGQCAIIMFDVTSRITY-KNVPNWHRDIVRVCE-N--IPIVLVGNKVDVK 126 (215)
T ss_pred h--ccCCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC-C--CCEEEEEECccCc
Confidence 2 4789999998875421 2 222345555554432 2 6889999999984
No 227
>PRK10218 GTP-binding protein; Provisional
Probab=99.33 E-value=6.3e-11 Score=117.07 Aligned_cols=177 Identities=14% Similarity=0.127 Sum_probs=102.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccC---------------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 104 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~---------------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~ 104 (309)
-+|+++|..++|||||+++|+......... ..+.|.......+.+++..+.+|||||..++..
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~-- 83 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG-- 83 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH--
Confidence 589999999999999999999742211111 122333344455667889999999999965432
Q ss_pred HHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHH
Q 021699 105 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEA 184 (309)
Q Consensus 105 ~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~ 184 (309)
.....+ ..+|++++|++... .....+...+..+... + .|.++|+||+|.... .+++.++ .
T Consensus 84 -~v~~~l------~~aDg~ILVVDa~~-G~~~qt~~~l~~a~~~-g----ip~IVviNKiD~~~a---~~~~vl~----e 143 (607)
T PRK10218 84 -EVERVM------SMVDSVLLVVDAFD-GPMPQTRFVTKKAFAY-G----LKPIVVINKVDRPGA---RPDWVVD----Q 143 (607)
T ss_pred -HHHHHH------HhCCEEEEEEeccc-CccHHHHHHHHHHHHc-C----CCEEEEEECcCCCCC---chhHHHH----H
Confidence 222222 58999999977643 3445555565554432 3 688999999997422 3444332 3
Q ss_pred HHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021699 185 LLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 185 l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
+++++.... ... ....+|++++++. ++.+... +.....-+..|++.|...++..
T Consensus 144 i~~l~~~l~-~~~---~~~~~PVi~~SA~----~G~~~~~-~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 144 VFDLFVNLD-ATD---EQLDFPIVYASAL----NGIAGLD-HEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred HHHHHhccC-ccc---cccCCCEEEeEhh----cCcccCC-ccccccchHHHHHHHHHhCCCC
Confidence 333332211 110 1124789888763 2221100 0000112567777777777644
No 228
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.33 E-value=1.6e-11 Score=103.34 Aligned_cols=122 Identities=18% Similarity=0.235 Sum_probs=78.5
Q ss_pred HHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 021699 28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 107 (309)
Q Consensus 28 ~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~ 107 (309)
++.++... ....+|+++|..|+||||+++.|.......+. +|.......+.+.+..+.++|.+|........+.
T Consensus 4 ~~~~~~~~-~~~~~ililGl~~sGKTtll~~l~~~~~~~~~----pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~- 77 (175)
T PF00025_consen 4 VLSKLKSK-KKEIKILILGLDGSGKTTLLNRLKNGEISETI----PTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKS- 77 (175)
T ss_dssp HHHHCTTT-TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEE----EESSEEEEEEEETTEEEEEEEESSSGGGGGGGGG-
T ss_pred HHHHhccc-CcEEEEEEECCCccchHHHHHHhhhccccccC----cccccccceeeeCcEEEEEEecccccccccccee-
Confidence 45555543 35799999999999999999999976532211 2333344556778999999999997332222222
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCc--cccCcEEEEEecccCC
Q 021699 108 IQLIKRFLLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLS 167 (309)
Q Consensus 108 ~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~--~~~~~~iiV~tk~D~~ 167 (309)
+. .++|+++||++.... ++. +..+.+.+.+.. ....|+++++||.|..
T Consensus 78 ------y~--~~~~~iIfVvDssd~~~l~----e~~~~L~~ll~~~~~~~~piLIl~NK~D~~ 128 (175)
T PF00025_consen 78 ------YF--QNADGIIFVVDSSDPERLQ----EAKEELKELLNDPELKDIPILILANKQDLP 128 (175)
T ss_dssp ------GH--TTESEEEEEEETTGGGGHH----HHHHHHHHHHTSGGGTTSEEEEEEESTTST
T ss_pred ------ec--cccceeEEEEecccceeec----ccccchhhhcchhhcccceEEEEecccccc
Confidence 11 589999999765432 222 222233333321 1237999999999974
No 229
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.33 E-value=2.6e-12 Score=101.80 Aligned_cols=119 Identities=19% Similarity=0.190 Sum_probs=83.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHH-HHhhh
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLI-KRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i-~~~~~ 116 (309)
++++|+|.+|+|||||+-.+... .+..+.....+.+....+..++|. ++.||||+|... ++.+ ..+.
T Consensus 9 fkllIigDsgVGKssLl~rF~dd-tFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqEr--------Frtitstyy- 78 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADD-TFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQER--------FRTITSTYY- 78 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhc-ccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHH--------HHHHHHHHc-
Confidence 57789999999999999777655 333333333444555555556664 789999999832 2222 2222
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 172 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~ 172 (309)
+++|++++|++++.......-.+|++++...+.. .|-++|.||.|..+..-.
T Consensus 79 -rgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~~RrvV 130 (198)
T KOG0079|consen 79 -RGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDPERRVV 130 (198)
T ss_pred -cCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCccceee
Confidence 6999999999987544346678899999888764 688999999998544433
No 230
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.31 E-value=1.6e-11 Score=104.96 Aligned_cols=127 Identities=20% Similarity=0.185 Sum_probs=86.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
...+|+++|.+|+|||+++..+++.. .+..+.++..+.......++|. .+.|+||+|..+.....+.
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~--f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~--------- 70 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGR--FVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDL--------- 70 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccc--cccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHH---------
Confidence 35899999999999999999999876 3444444444555555555554 6789999995443322222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
.....|++++|++++...-.+....+.+.|.+..+.. +.|+++|+||+|+.....++.++
T Consensus 71 ~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~-~~PivlVGNK~Dl~~~R~V~~ee 130 (196)
T KOG0395|consen 71 YIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRD-DVPIILVGNKCDLERERQVSEEE 130 (196)
T ss_pred hhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcC-CCCEEEEEEcccchhccccCHHH
Confidence 1257899999999976432244455666665544433 26999999999997655655554
No 231
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.30 E-value=3.6e-11 Score=97.01 Aligned_cols=127 Identities=24% Similarity=0.255 Sum_probs=85.3
Q ss_pred HHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc
Q 021699 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 104 (309)
Q Consensus 25 l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~ 104 (309)
+..++++.+.+.+ +++|+++|..|+||||+++.+.+++...+++ |.-....+.++.+..+.+||.-|........
T Consensus 3 ~lsilrk~k~ker-E~riLiLGLdNsGKTti~~kl~~~~~~~i~p----t~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W 77 (185)
T KOG0073|consen 3 LLSILRKQKLKER-EVRILILGLDNSGKTTIVKKLLGEDTDTISP----TLGFQIKTLEYKGYTLNIWDVGGQKTLRSYW 77 (185)
T ss_pred HHHHHHHHHhhhh-eeEEEEEecCCCCchhHHHHhcCCCccccCC----ccceeeEEEEecceEEEEEEcCCcchhHHHH
Confidence 3456777777666 7999999999999999999999998543333 4555666788899999999999983322222
Q ss_pred HHHHHHHHHhhhcCCCcEEEEEEeCCc-cccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 105 YHAIQLIKRFLLNKTIDVLLYVDRLDV-YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 105 ~~~~~~i~~~~~~~~~d~il~v~~~d~-~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..| . ...|+++||++... .++ +.....++.+... ..-+..+++++.||.|+.
T Consensus 78 ~nY-------f--estdglIwvvDssD~~r~-~e~~~~L~~lL~e-erlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 78 KNY-------F--ESTDGLIWVVDSSDRMRM-QECKQELTELLVE-ERLAGAPLLVLANKQDLP 130 (185)
T ss_pred HHh-------h--hccCeEEEEEECchHHHH-HHHHHHHHHHHhh-hhhcCCceEEEEecCcCc
Confidence 122 1 47899999966522 122 2223333333221 112236899999999984
No 232
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.30 E-value=5.3e-11 Score=113.16 Aligned_cols=169 Identities=18% Similarity=0.157 Sum_probs=92.1
Q ss_pred cCCCceEEEEEeCCCCCHHHHHHHHhCCCc--ccccCCCCCCCeeEE----------------EEee--e---C-----C
Q 021699 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKA--VTVSTFQSEGPRPVM----------------VSRS--R---A-----G 86 (309)
Q Consensus 35 ~~~~~l~I~vvG~~g~GKSSliN~l~g~~~--~~~~~~~~~t~~~~~----------------~~~~--~---~-----g 86 (309)
+...+++|+++|..++|||||+.+|.+... .......+.|..... +... . + .
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 344679999999999999999999976411 010001112211100 0000 0 0 2
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021699 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
..+.||||||..+ ....++.. ...+|++++|++.+...........+..+.. .+. +++++|+||+|+
T Consensus 85 ~~i~liDtPG~~~---f~~~~~~~------~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i---~~iiVVlNK~Dl 151 (411)
T PRK04000 85 RRVSFVDAPGHET---LMATMLSG------AALMDGAILVIAANEPCPQPQTKEHLMALDI-IGI---KNIVIVQNKIDL 151 (411)
T ss_pred cEEEEEECCCHHH---HHHHHHHH------HhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEEeecc
Confidence 5799999999632 11111111 1478999999776532113444455544432 231 478999999998
Q ss_pred CCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021699 167 SLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
.+++. ..+ ..+.+++++... . ...+|++++|+. ++.+ ++.|++.+...++
T Consensus 152 ~~~~~--~~~----~~~~i~~~l~~~--~------~~~~~ii~vSA~----~g~g-----------I~~L~~~L~~~l~ 201 (411)
T PRK04000 152 VSKER--ALE----NYEQIKEFVKGT--V------AENAPIIPVSAL----HKVN-----------IDALIEAIEEEIP 201 (411)
T ss_pred ccchh--HHH----HHHHHHHHhccc--c------CCCCeEEEEECC----CCcC-----------HHHHHHHHHHhCC
Confidence 64321 111 113344444321 0 113688888763 3332 6788887776554
No 233
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.30 E-value=8.2e-11 Score=105.84 Aligned_cols=119 Identities=23% Similarity=0.307 Sum_probs=87.1
Q ss_pred EEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCC----CcHHHHHHHHHhhh
Q 021699 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGY----VNYHAIQLIKRFLL 116 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~l~liDTPG~~~~~~----~~~~~~~~i~~~~~ 116 (309)
|.+||-||+|||||+|++...+. .+.+++.||..|....... .+..+++-|.||+.+... ...+.++.|
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkP-KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHI----- 235 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKP-KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHI----- 235 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCC-cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHH-----
Confidence 67899999999999999998875 7889999999887766664 556799999999987543 334555555
Q ss_pred cCCCcEEEEEEeCCccc-cCh-hH-HHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 117 NKTIDVLLYVDRLDVYR-VDN-LD-KQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~-~~~-~d-~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++.++++|++++... .++ .+ ..+..+|...-..-..+|.++|+||+|+.
T Consensus 236 -ERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~ 288 (369)
T COG0536 236 -ERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP 288 (369)
T ss_pred -HhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC
Confidence 5788999998776432 122 22 33444555443344558999999999964
No 234
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.30 E-value=1.6e-11 Score=106.55 Aligned_cols=119 Identities=20% Similarity=0.255 Sum_probs=78.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.++|+++|..|+|||||+|++.+........ +..+........... ...+.+|||+|+.+.. .....+.
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~-------~~~~~y~- 75 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYP-PTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYR-------SLRPEYY- 75 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCC-CceeeeeEEEEEEeCCCEEEEEeecCCCHHHHH-------HHHHHHh-
Confidence 3899999999999999999999886432222 121222112122222 4578999999994322 1111222
Q ss_pred cCCCcEEEEEEeCCc-cccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 117 NKTIDVLLYVDRLDV-YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 117 ~~~~d~il~v~~~d~-~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
.+++++++|++... .++...-..+.+.+....+.. .++++|.||+|+...
T Consensus 76 -~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~ 126 (219)
T COG1100 76 -RGANGILIVYDSTLRESSDELTEEWLEELRELAPDD--VPILLVGNKIDLFDE 126 (219)
T ss_pred -cCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCC--ceEEEEecccccccc
Confidence 68999999977754 345555667777777765422 699999999999643
No 235
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.29 E-value=4.9e-11 Score=120.50 Aligned_cols=114 Identities=15% Similarity=0.102 Sum_probs=79.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCccc-----ccC------------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVT-----VST------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 102 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~-----~~~------------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~ 102 (309)
-+|+|+|+.|+|||||+|+|+...... +.+ ..+.|.......+.+++..+.+|||||+.+...
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~ 90 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV 90 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH
Confidence 589999999999999999998532211 111 234455556667788999999999999965321
Q ss_pred CcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+....+ ..+|++++|++... .....+..++..+.+. + .|+++|+||+|+..
T Consensus 91 ---~~~~~l------~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~-~----~p~ivviNK~D~~~ 141 (689)
T TIGR00484 91 ---EVERSL------RVLDGAVAVLDAVG-GVQPQSETVWRQANRY-E----VPRIAFVNKMDKTG 141 (689)
T ss_pred ---HHHHHH------HHhCEEEEEEeCCC-CCChhHHHHHHHHHHc-C----CCEEEEEECCCCCC
Confidence 222233 47899999977643 3555666666665443 2 68999999999863
No 236
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.29 E-value=3.1e-11 Score=103.74 Aligned_cols=109 Identities=13% Similarity=0.101 Sum_probs=69.0
Q ss_pred EeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcE
Q 021699 45 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 122 (309)
Q Consensus 45 vG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~ 122 (309)
+|.+|||||||+++++.... .....+..+.......+..+ ..++.||||||......... .++ .++|+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f-~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~-------~~~--~~ad~ 70 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRD-------GYY--IQGQC 70 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhH-------HHh--cCCCE
Confidence 69999999999999996542 21111221122222333333 45899999999854322211 122 68999
Q ss_pred EEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 123 LLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 123 il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+++|++++.. ++.. -..|+..+.+... ..|+++|+||+|+.
T Consensus 71 ~ilV~D~t~~~S~~~-i~~w~~~i~~~~~---~~piilvgNK~Dl~ 112 (200)
T smart00176 71 AIIMFDVTARVTYKN-VPNWHRDLVRVCE---NIPIVLCGNKVDVK 112 (200)
T ss_pred EEEEEECCChHHHHH-HHHHHHHHHHhCC---CCCEEEEEECcccc
Confidence 9999888643 2322 2357777776542 26999999999984
No 237
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.28 E-value=9.8e-11 Score=111.28 Aligned_cols=166 Identities=19% Similarity=0.173 Sum_probs=91.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccc--ccCCCCCCCeeE----------------EEEee----------eCCeEE
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT--VSTFQSEGPRPV----------------MVSRS----------RAGFTL 89 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~--~~~~~~~t~~~~----------------~~~~~----------~~g~~l 89 (309)
.+++|+++|..++|||||+++|.+..... .....+.|.... .+... ..+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 56999999999999999999998752100 000001111000 00000 124689
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 90 NIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 90 ~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
.+|||||..+ +...+.... ..+|++++|++.+.........+.+..+ ...+. +++++|+||+|+.+.
T Consensus 83 ~liDtPGh~~-------f~~~~~~g~--~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi---~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 83 SFVDAPGHET-------LMATMLSGA--ALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGI---KNIVIVQNKIDLVSK 149 (406)
T ss_pred EEEECCCHHH-------HHHHHHHHH--HHCCEEEEEEECCCCccccchHHHHHHH-HHcCC---CeEEEEEEccccCCH
Confidence 9999999732 222222111 4789999997776421134444555444 33332 579999999998632
Q ss_pred CCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021699 170 DRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
+ ......+.+++++... + ....|++++++. ++.+ ++.|++.+...++
T Consensus 150 ~------~~~~~~~~i~~~l~~~--~------~~~~~ii~vSA~----~g~g-----------i~~L~e~L~~~l~ 196 (406)
T TIGR03680 150 E------KALENYEEIKEFVKGT--V------AENAPIIPVSAL----HNAN-----------IDALLEAIEKFIP 196 (406)
T ss_pred H------HHHHHHHHHHhhhhhc--c------cCCCeEEEEECC----CCCC-----------hHHHHHHHHHhCC
Confidence 1 1111123344443321 0 113688888763 3333 6777777776544
No 238
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.27 E-value=1.2e-10 Score=115.25 Aligned_cols=113 Identities=16% Similarity=0.205 Sum_probs=69.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCccccc--------C------CCCCCCeeEEEEeee---CC--eEEEEEeCCCCCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVS--------T------FQSEGPRPVMVSRSR---AG--FTLNIVDTPGLIEG 100 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~--------~------~~~~t~~~~~~~~~~---~g--~~l~liDTPG~~~~ 100 (309)
-+|+++|..++|||||+++|+........ + ..+.|.........+ ++ ..+.||||||..++
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 48999999999999999999865321111 0 113343333333433 22 57899999999653
Q ss_pred CCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
. .. +.+++ ..+|++++|++.+. ..+..+...+....+. ..|+++|+||+|+.
T Consensus 84 ~---~~----v~~~l--~~aD~aILVvDat~-g~~~qt~~~~~~~~~~-----~ipiIiViNKiDl~ 135 (595)
T TIGR01393 84 S---YE----VSRSL--AACEGALLLVDAAQ-GIEAQTLANVYLALEN-----DLEIIPVINKIDLP 135 (595)
T ss_pred H---HH----HHHHH--HhCCEEEEEecCCC-CCCHhHHHHHHHHHHc-----CCCEEEEEECcCCC
Confidence 2 12 22222 47899999977643 3334443333222221 26899999999984
No 239
>PRK00007 elongation factor G; Reviewed
Probab=99.27 E-value=6.2e-11 Score=119.69 Aligned_cols=114 Identities=16% Similarity=0.144 Sum_probs=80.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHh---CCCcc--ccc------------CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSII---GEKAV--TVS------------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 102 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~---g~~~~--~~~------------~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~ 102 (309)
.+|+|+|+.|+|||||+|+|+ |.... .++ ...+.|.+.....+.+.+..++++||||+.++
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f-- 88 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF-- 88 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH--
Confidence 599999999999999999997 32110 111 12345556656677888999999999998432
Q ss_pred CcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
. .+....+ ..+|++++|++... .+...+..++..+.+. + .|.++++||+|+..
T Consensus 89 ~-~ev~~al------~~~D~~vlVvda~~-g~~~qt~~~~~~~~~~-~----~p~iv~vNK~D~~~ 141 (693)
T PRK00007 89 T-IEVERSL------RVLDGAVAVFDAVG-GVEPQSETVWRQADKY-K----VPRIAFVNKMDRTG 141 (693)
T ss_pred H-HHHHHHH------HHcCEEEEEEECCC-CcchhhHHHHHHHHHc-C----CCEEEEEECCCCCC
Confidence 1 1222233 47799999976543 4677788887776654 3 68899999999863
No 240
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.26 E-value=6.8e-11 Score=113.43 Aligned_cols=180 Identities=14% Similarity=0.193 Sum_probs=100.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCccc------------------------ccC------CCCCCCeeEEEEeeeCC
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVT------------------------VST------FQSEGPRPVMVSRSRAG 86 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~------------------------~~~------~~~~t~~~~~~~~~~~g 86 (309)
...++|+++|..++|||||+.+|+...... +.+ ..+.|.+.....+++++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 357999999999999999999998521100 000 12234444445567788
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCcccc------ChhHHHHHHHHHHHhCccccCcEEEE
Q 021699 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV------DNLDKQITRAITDNFGEQIWKRALIV 160 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~------~~~d~~~l~~l~~~~g~~~~~~~iiV 160 (309)
..+.|+||||..+ +...+...+ ..+|++++|++.+..-+ ..+..+.+..+. ..|. +++|++
T Consensus 85 ~~i~lIDtPGh~~-------f~~~~~~g~--~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~-~~gi---~~iiv~ 151 (446)
T PTZ00141 85 YYFTIIDAPGHRD-------FIKNMITGT--SQADVAILVVASTAGEFEAGISKDGQTREHALLAF-TLGV---KQMIVC 151 (446)
T ss_pred eEEEEEECCChHH-------HHHHHHHhh--hhcCEEEEEEEcCCCceecccCCCccHHHHHHHHH-HcCC---CeEEEE
Confidence 8999999999742 122222222 58999999977653211 234455554443 3342 458899
Q ss_pred EecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCch--HHHHH
Q 021699 161 LTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWI--PNLVK 238 (309)
Q Consensus 161 ~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~--~~L~~ 238 (309)
+||+|.... +++.+ ..+...+.+++.+... ++. ...+|++++++. ++.+.... .+...|. +.|++
T Consensus 152 vNKmD~~~~-~~~~~-~~~~i~~~i~~~l~~~-g~~-----~~~~~~ipiSa~----~g~ni~~~-~~~~~Wy~G~tL~~ 218 (446)
T PTZ00141 152 INKMDDKTV-NYSQE-RYDEIKKEVSAYLKKV-GYN-----PEKVPFIPISGW----QGDNMIEK-SDNMPWYKGPTLLE 218 (446)
T ss_pred EEccccccc-hhhHH-HHHHHHHHHHHHHHhc-CCC-----cccceEEEeecc----cCCCcccC-CCCCcccchHHHHH
Confidence 999994211 11111 2222234555555432 121 123788888763 33332211 1223563 45666
Q ss_pred HHHH
Q 021699 239 TITE 242 (309)
Q Consensus 239 ~i~~ 242 (309)
.+..
T Consensus 219 ~l~~ 222 (446)
T PTZ00141 219 ALDT 222 (446)
T ss_pred HHhC
Confidence 6554
No 241
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.26 E-value=1.5e-10 Score=114.24 Aligned_cols=114 Identities=16% Similarity=0.127 Sum_probs=69.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeE--EEEeee----CC------------eEEEEEeCCCCCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV--MVSRSR----AG------------FTLNIVDTPGLIE 99 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~--~~~~~~----~g------------~~l~liDTPG~~~ 99 (309)
.+..|+++|++|+|||||+|+|.+.......+ .+.|.+.. ...... .+ ..++||||||..+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~-g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEA-GGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCC-CceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 45689999999999999999999875322111 11111110 000000 00 1278999999854
Q ss_pred CCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 100 ~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+... ..+.. ..+|++++|++.+. .+.......+..+... + .|+++++||+|+.
T Consensus 84 f~~~-------~~~~~--~~aD~~IlVvDa~~-g~~~qt~e~i~~~~~~-~----vpiIvviNK~D~~ 136 (586)
T PRK04004 84 FTNL-------RKRGG--ALADIAILVVDINE-GFQPQTIEAINILKRR-K----TPFVVAANKIDRI 136 (586)
T ss_pred HHHH-------HHHhH--hhCCEEEEEEECCC-CCCHhHHHHHHHHHHc-C----CCEEEEEECcCCc
Confidence 3211 11111 47899999987754 3556666666555432 2 6899999999985
No 242
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.26 E-value=2.1e-10 Score=100.48 Aligned_cols=109 Identities=20% Similarity=0.283 Sum_probs=72.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCc-ccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKA-VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~-~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..+..|+++|.+|+|||||+|+|++... ...+...++ .. .....+..+.++||||.. ...++.+
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~-i~~~~~~~i~~vDtPg~~------~~~l~~a---- 101 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----IT-VVTGKKRRLTFIECPNDI------NAMIDIA---- 101 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EE-EEecCCceEEEEeCCchH------HHHHHHH----
Confidence 4578899999999999999999998621 112211111 11 122367789999999852 2333333
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCc-EEEEEecccCCC
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~-~iiV~tk~D~~~ 168 (309)
..+|+++++++... .+...+..++..+... | .| +++|+||+|+..
T Consensus 102 --k~aDvVllviDa~~-~~~~~~~~i~~~l~~~-g----~p~vi~VvnK~D~~~ 147 (225)
T cd01882 102 --KVADLVLLLIDASF-GFEMETFEFLNILQVH-G----FPRVMGVLTHLDLFK 147 (225)
T ss_pred --HhcCEEEEEEecCc-CCCHHHHHHHHHHHHc-C----CCeEEEEEeccccCC
Confidence 47899999966542 4566677777666543 3 45 455999999863
No 243
>PRK12739 elongation factor G; Reviewed
Probab=99.26 E-value=6.7e-11 Score=119.49 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=81.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCc-----cccc------------CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKA-----VTVS------------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~-----~~~~------------~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
-.+|+|+|+.++|||||+|+|+.... ..+. ...+.|.+.....+.+++..+.++||||+.+.
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f- 86 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF- 86 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH-
Confidence 46899999999999999999975311 0111 13345666666777889999999999998431
Q ss_pred CCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+....+ ..+|++++|++... .+...+..++..+.+. + .|.++++||+|+..
T Consensus 87 --~~e~~~al------~~~D~~ilVvDa~~-g~~~qt~~i~~~~~~~-~----~p~iv~iNK~D~~~ 139 (691)
T PRK12739 87 --TIEVERSL------RVLDGAVAVFDAVS-GVEPQSETVWRQADKY-G----VPRIVFVNKMDRIG 139 (691)
T ss_pred --HHHHHHHH------HHhCeEEEEEeCCC-CCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCC
Confidence 11222222 47799999977543 4667777777776553 3 68999999999863
No 244
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.25 E-value=1.8e-11 Score=101.12 Aligned_cols=57 Identities=23% Similarity=0.366 Sum_probs=48.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~ 97 (309)
.+++|+++|.+|+|||||+|+|++.....+++.+++|+....+.. +..+.++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 468999999999999999999999988889999998876554432 335899999996
No 245
>PTZ00258 GTP-binding protein; Provisional
Probab=99.25 E-value=3.8e-11 Score=112.27 Aligned_cols=86 Identities=24% Similarity=0.319 Sum_probs=67.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-----------------eEEEEEeCCCCCC
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIE 99 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~l~liDTPG~~~ 99 (309)
...++|+++|.||+|||||+|+|++... .+++++++|.++......+.+ ..+.++||||+..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 4579999999999999999999998874 888999999888877765542 2489999999976
Q ss_pred CCCCcH----HHHHHHHHhhhcCCCcEEEEEEeC
Q 021699 100 GGYVNY----HAIQLIKRFLLNKTIDVLLYVDRL 129 (309)
Q Consensus 100 ~~~~~~----~~~~~i~~~~~~~~~d~il~v~~~ 129 (309)
.....+ +++..+ +.+|++++|++.
T Consensus 98 ga~~g~gLg~~fL~~I------r~aD~il~VVd~ 125 (390)
T PTZ00258 98 GASEGEGLGNAFLSHI------RAVDGIYHVVRA 125 (390)
T ss_pred CCcchhHHHHHHHHHH------HHCCEEEEEEeC
Confidence 443322 223333 589999999775
No 246
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.23 E-value=5.8e-11 Score=109.85 Aligned_cols=86 Identities=22% Similarity=0.274 Sum_probs=65.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-----------------EEEEEeCCCCCCCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-----------------TLNIVDTPGLIEGGY 102 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-----------------~l~liDTPG~~~~~~ 102 (309)
++|+++|.+|+|||||+|+|++.. ..+++++++|.++......+.+. .+.++||||+.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 789999999999999999999998 58889999998887666555442 489999999976443
Q ss_pred CcHHHHHHHHHhhh-cCCCcEEEEEEeC
Q 021699 103 VNYHAIQLIKRFLL-NKTIDVLLYVDRL 129 (309)
Q Consensus 103 ~~~~~~~~i~~~~~-~~~~d~il~v~~~ 129 (309)
..+.. -.+++. .+.+|++++|++.
T Consensus 82 ~g~gl---g~~fL~~i~~aD~li~VVd~ 106 (364)
T PRK09601 82 KGEGL---GNQFLANIREVDAIVHVVRC 106 (364)
T ss_pred hHHHH---HHHHHHHHHhCCEEEEEEeC
Confidence 32211 122332 2699999999776
No 247
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.23 E-value=3.2e-11 Score=101.10 Aligned_cols=57 Identities=28% Similarity=0.381 Sum_probs=49.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~ 97 (309)
..++++++|.+|+|||||+|+|+|...+.+++.+++|+....+.. +..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 358999999999999999999999998899999999887665543 246899999996
No 248
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.23 E-value=4e-11 Score=107.40 Aligned_cols=84 Identities=24% Similarity=0.279 Sum_probs=63.9
Q ss_pred EEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-----------------EEEEEeCCCCCCCCCCc
Q 021699 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-----------------TLNIVDTPGLIEGGYVN 104 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-----------------~l~liDTPG~~~~~~~~ 104 (309)
|+++|.+|+|||||+|+|++.+. .+++++++|.++......+.+. .+.++||||+.......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 57999999999999999999987 7888999998887766665543 48999999998654333
Q ss_pred HHHHHHHHHhhh-cCCCcEEEEEEeC
Q 021699 105 YHAIQLIKRFLL-NKTIDVLLYVDRL 129 (309)
Q Consensus 105 ~~~~~~i~~~~~-~~~~d~il~v~~~ 129 (309)
+.. ..+++. .+.+|++++|++.
T Consensus 80 ~gl---g~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 80 EGL---GNKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred hHH---HHHHHHHHHhCCEEEEEEeC
Confidence 221 122332 2689999999775
No 249
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.22 E-value=9.1e-11 Score=94.38 Aligned_cols=100 Identities=22% Similarity=0.287 Sum_probs=61.5
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
||+++|++|+|||||+++|.|.+... ...+ ...+.+ .+|||||=+- .+......+... ...+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~--------~KTq--~i~~~~---~~IDTPGEyi---E~~~~y~aLi~t--a~da 64 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY--------KKTQ--AIEYYD---NTIDTPGEYI---ENPRFYHALIVT--AQDA 64 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc--------Cccc--eeEecc---cEEECChhhe---eCHHHHHHHHHH--HhhC
Confidence 79999999999999999999976311 1111 122222 3599999632 222233333222 2589
Q ss_pred cEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 121 d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
|+|+++.+.+... ..--- .+...| .+|+|-|+||+|+.
T Consensus 65 d~V~ll~dat~~~-~~~pP----~fa~~f----~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 65 DVVLLLQDATEPR-SVFPP----GFASMF----NKPVIGVITKIDLP 102 (143)
T ss_pred CEEEEEecCCCCC-ccCCc----hhhccc----CCCEEEEEECccCc
Confidence 9999997665421 11111 122333 37999999999986
No 250
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.20 E-value=4.2e-10 Score=109.84 Aligned_cols=115 Identities=11% Similarity=0.135 Sum_probs=74.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC--CcccccCCC-------------------CCCCeeEEEEeeeCCeEEEEEeCCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE--KAVTVSTFQ-------------------SEGPRPVMVSRSRAGFTLNIVDTPG 96 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~--~~~~~~~~~-------------------~~t~~~~~~~~~~~g~~l~liDTPG 96 (309)
+..+|+|+|.+|+|||||+++|+-. .....+... +.+.......+.+++..+.+|||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 4579999999999999999998632 111111110 1122233345677889999999999
Q ss_pred CCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 97 ~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+. .......+ ..+|++|+|++... .+......+++.... .+ .|+++++||+|+.
T Consensus 90 ~~df---~~~~~~~l------~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~-~~----~PiivviNKiD~~ 145 (527)
T TIGR00503 90 HEDF---SEDTYRTL------TAVDNCLMVIDAAK-GVETRTRKLMEVTRL-RD----TPIFTFMNKLDRD 145 (527)
T ss_pred hhhH---HHHHHHHH------HhCCEEEEEEECCC-CCCHHHHHHHHHHHh-cC----CCEEEEEECcccc
Confidence 9432 22233333 48999999977643 355555555544332 22 6999999999974
No 251
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.19 E-value=1.5e-09 Score=104.18 Aligned_cols=180 Identities=12% Similarity=0.161 Sum_probs=99.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCccc------------------------ccC------CCCCCCeeEEEEeeeCC
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVT------------------------VST------FQSEGPRPVMVSRSRAG 86 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~------------------------~~~------~~~~t~~~~~~~~~~~g 86 (309)
..+++|+++|..++|||||+-+|+-..... ..+ ..+.|.+.....++.++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 457999999999999999998887321100 000 11233444445566778
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccC------hhHHHHHHHHHHHhCccccCcEEEE
Q 021699 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD------NLDKQITRAITDNFGEQIWKRALIV 160 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~------~~d~~~l~~l~~~~g~~~~~~~iiV 160 (309)
..++++||||..+ +...+...+ ..+|++++|++.+...+. ....+.+.. ....|. +++|++
T Consensus 85 ~~i~liDtPGh~d-------f~~~~~~g~--~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~-~~~~gi---~~iIV~ 151 (447)
T PLN00043 85 YYCTVIDAPGHRD-------FIKNMITGT--SQADCAVLIIDSTTGGFEAGISKDGQTREHALL-AFTLGV---KQMICC 151 (447)
T ss_pred EEEEEEECCCHHH-------HHHHHHhhh--hhccEEEEEEEcccCceecccCCCchHHHHHHH-HHHcCC---CcEEEE
Confidence 8999999999832 222222222 589999999877542222 222333322 223342 468999
Q ss_pred EecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCch--HHHHH
Q 021699 161 LTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWI--PNLVK 238 (309)
Q Consensus 161 ~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~--~~L~~ 238 (309)
+||+|+.+ .+++.+.| ....+.++.++.+. ++. ...+|++++++. ++.+.....+ ..+|. +.|++
T Consensus 152 vNKmD~~~-~~~~~~~~-~~i~~ei~~~l~~~-g~~-----~~~~~~ipiSa~----~G~ni~~~~~-~~~Wy~g~tLl~ 218 (447)
T PLN00043 152 CNKMDATT-PKYSKARY-DEIVKEVSSYLKKV-GYN-----PDKIPFVPISGF----EGDNMIERST-NLDWYKGPTLLE 218 (447)
T ss_pred EEcccCCc-hhhhHHHH-HHHHHHHHHHHHHc-CCC-----cccceEEEEecc----cccccccccc-CCcccchHHHHH
Confidence 99999751 12221222 22234555555432 121 123788888763 4444322111 24674 36777
Q ss_pred HHHH
Q 021699 239 TITE 242 (309)
Q Consensus 239 ~i~~ 242 (309)
.+..
T Consensus 219 ~l~~ 222 (447)
T PLN00043 219 ALDQ 222 (447)
T ss_pred HHhh
Confidence 6654
No 252
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.19 E-value=6e-10 Score=110.47 Aligned_cols=113 Identities=18% Similarity=0.181 Sum_probs=70.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccc--------c------CCCCCCCeeEEEEeeeC-----CeEEEEEeCCCCCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTV--------S------TFQSEGPRPVMVSRSRA-----GFTLNIVDTPGLIEG 100 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~--------~------~~~~~t~~~~~~~~~~~-----g~~l~liDTPG~~~~ 100 (309)
-+|+++|..++|||||+++|+....... . ...+.|.........+. +..+.||||||..++
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 4899999999999999999986321110 0 01233433333344332 467999999999653
Q ss_pred CCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
. .+ +.+++ ..+|++|+|++... .....+...+..+.. .+ .|+++|+||+|+.
T Consensus 88 ~---~~----v~~sl--~~aD~aILVVDas~-gv~~qt~~~~~~~~~-~~----lpiIvViNKiDl~ 139 (600)
T PRK05433 88 S---YE----VSRSL--AACEGALLVVDASQ-GVEAQTLANVYLALE-ND----LEIIPVLNKIDLP 139 (600)
T ss_pred H---HH----HHHHH--HHCCEEEEEEECCC-CCCHHHHHHHHHHHH-CC----CCEEEEEECCCCC
Confidence 2 12 22222 47899999977643 344444433333322 12 6899999999984
No 253
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.18 E-value=7.5e-11 Score=97.19 Aligned_cols=57 Identities=26% Similarity=0.458 Sum_probs=49.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~ 97 (309)
...+++++|.+|+||||++|+|++.....++..+++|........ +..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 568999999999999999999999887778888899888776543 246999999996
No 254
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.18 E-value=8.8e-11 Score=106.56 Aligned_cols=66 Identities=21% Similarity=0.364 Sum_probs=54.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH 106 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~ 106 (309)
..++++++|.+|+||||++|+|++...+.+++.+++|+..+.... +..+.++||||+......+++
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~~~~~~~~ 185 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL---GKGLELLDTPGILWPKLEDQE 185 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe---CCcEEEEECCCcCCCCCCcHH
Confidence 468999999999999999999999988888999998887654332 346899999999877655544
No 255
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.16 E-value=2e-09 Score=98.96 Aligned_cols=173 Identities=21% Similarity=0.208 Sum_probs=95.2
Q ss_pred HHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC------CcccccCCCCC-----------------CCeeEEEE
Q 021699 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE------KAVTVSTFQSE-----------------GPRPVMVS 81 (309)
Q Consensus 25 l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~------~~~~~~~~~~~-----------------t~~~~~~~ 81 (309)
..++++.+.+....++.|.|.|.+|+|||||++.|... ++..+...+++ ..++..+.
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~ 121 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFI 121 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEE
Confidence 34566666655557899999999999999999986532 22111111111 01111111
Q ss_pred e----------------------eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHH
Q 021699 82 R----------------------SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDK 139 (309)
Q Consensus 82 ~----------------------~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~ 139 (309)
. ...|..+.|+||+|.+.... .+ . ..+|+++++.... ...+.
T Consensus 122 r~~~~~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~---~i---~------~~aD~vlvv~~p~----~gd~i 185 (332)
T PRK09435 122 RPSPSSGTLGGVARKTRETMLLCEAAGYDVILVETVGVGQSET---AV---A------GMVDFFLLLQLPG----AGDEL 185 (332)
T ss_pred EecCCcccccchHHHHHHHHHHHhccCCCEEEEECCCCccchh---HH---H------HhCCEEEEEecCC----chHHH
Confidence 1 12467899999999963221 11 1 3689999994422 12233
Q ss_pred HHHHH-HHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccC
Q 021699 140 QITRA-ITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAK 218 (309)
Q Consensus 140 ~~l~~-l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~ 218 (309)
+.++. +.+. .-++|+||+|+.+... .+.. ...+++.+... .........|++++++. +
T Consensus 186 q~~k~gi~E~-------aDIiVVNKaDl~~~~~--a~~~----~~el~~~L~l~----~~~~~~w~~pVi~vSA~----~ 244 (332)
T PRK09435 186 QGIKKGIMEL-------ADLIVINKADGDNKTA--ARRA----AAEYRSALRLL----RPKDPGWQPPVLTCSAL----E 244 (332)
T ss_pred HHHHhhhhhh-------hheEEeehhcccchhH--HHHH----HHHHHHHHhcc----cccccCCCCCEEEEECC----C
Confidence 33332 2222 3489999999863321 2222 13344444321 10001123689888773 4
Q ss_pred CcCCcccCCCCCCchHHHHHHHHHHHh
Q 021699 219 NENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 219 ~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
+.+ +++|++.|.....
T Consensus 245 g~G-----------IdeL~~~I~~~~~ 260 (332)
T PRK09435 245 GEG-----------IDEIWQAIEDHRA 260 (332)
T ss_pred CCC-----------HHHHHHHHHHHHH
Confidence 433 7888888877764
No 256
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.16 E-value=1.3e-10 Score=104.95 Aligned_cols=65 Identities=22% Similarity=0.369 Sum_probs=53.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY 105 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~ 105 (309)
..++++++|.+|+|||||+|+|++.....+++.+++|+..+.... +..+.++||||+......+.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPG~~~~~~~~~ 181 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL---SDGLELLDTPGILWPKFEDQ 181 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe---CCCEEEEECCCcccCCCCch
Confidence 468999999999999999999999988888899998887765443 23689999999976554443
No 257
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.15 E-value=5.9e-10 Score=97.48 Aligned_cols=121 Identities=17% Similarity=0.098 Sum_probs=67.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEee-eCCeEEEEEeCCCCCCCCCCc--HHHHHHHHHhhhc
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS-RAGFTLNIVDTPGLIEGGYVN--YHAIQLIKRFLLN 117 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~-~~g~~l~liDTPG~~~~~~~~--~~~~~~i~~~~~~ 117 (309)
||+++|+.|+||||..+.+++.-...-...-+.|.+....... .+...+.+||.||..+.-... .+....+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if------ 74 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIF------ 74 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHH------
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHH------
Confidence 7999999999999999999986432222223445555444444 355699999999996542221 1111122
Q ss_pred CCCcEEEEEEeCCccccChhHHH-HHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQ-ITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~-~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++++++||+++....+ ..+.. +...+......+...++-+.+.|+|+.+
T Consensus 75 ~~v~~LIyV~D~qs~~~-~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~ 125 (232)
T PF04670_consen 75 SNVGVLIYVFDAQSDDY-DEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS 125 (232)
T ss_dssp CTESEEEEEEETT-STC-HHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-
T ss_pred hccCEEEEEEEcccccH-HHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC
Confidence 68999999977753233 23322 2222222222222357888899999864
No 258
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.14 E-value=7.8e-10 Score=107.98 Aligned_cols=115 Identities=11% Similarity=0.130 Sum_probs=73.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCC--cccccCC-------------------CCCCCeeEEEEeeeCCeEEEEEeCCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEK--AVTVSTF-------------------QSEGPRPVMVSRSRAGFTLNIVDTPG 96 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~--~~~~~~~-------------------~~~t~~~~~~~~~~~g~~l~liDTPG 96 (309)
+--+|+|+|.+|+|||||+++|+... ....+.. .+.+.......+.+++..+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 34699999999999999999997321 1111110 01122223345677889999999999
Q ss_pred CCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 97 ~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+.. .+....+ ..+|++++|++... .+......+++.... .+ .|+++++||+|..
T Consensus 89 ~~df~---~~~~~~l------~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~-~~----iPiiv~iNK~D~~ 144 (526)
T PRK00741 89 HEDFS---EDTYRTL------TAVDSALMVIDAAK-GVEPQTRKLMEVCRL-RD----TPIFTFINKLDRD 144 (526)
T ss_pred chhhH---HHHHHHH------HHCCEEEEEEecCC-CCCHHHHHHHHHHHh-cC----CCEEEEEECCccc
Confidence 85432 2222333 47899999977643 344445555544332 22 7999999999974
No 259
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.14 E-value=1.5e-09 Score=101.05 Aligned_cols=178 Identities=15% Similarity=0.129 Sum_probs=111.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccC---------------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 104 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~---------------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~ 104 (309)
-+|+|+.....|||||+..|+.+....-.. ..+.|.-.......++|..|+|+||||..|++..-
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 379999999999999999999764322111 11223334445667899999999999998887766
Q ss_pred HHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHH
Q 021699 105 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEA 184 (309)
Q Consensus 105 ~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~ 184 (309)
+..++ -+|.||++++... ..-++.+-.++...+. | .+-|+|+||+|-. ....++.+.+ .
T Consensus 86 ERvl~---------MVDgvlLlVDA~E-GpMPQTrFVlkKAl~~-g----L~PIVVvNKiDrp---~Arp~~Vvd~---v 144 (603)
T COG1217 86 ERVLS---------MVDGVLLLVDASE-GPMPQTRFVLKKALAL-G----LKPIVVINKIDRP---DARPDEVVDE---V 144 (603)
T ss_pred hhhhh---------hcceEEEEEEccc-CCCCchhhhHHHHHHc-C----CCcEEEEeCCCCC---CCCHHHHHHH---H
Confidence 55554 4488888865533 3345555555443333 2 4778899999963 2245555542 2
Q ss_pred HHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCC
Q 021699 185 LLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGS 248 (309)
Q Consensus 185 l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~ 248 (309)
+--++.-.+... .-.+|+++.++........ ..+..+.+..|++.|+.+++.-.
T Consensus 145 fDLf~~L~A~de-----QLdFPivYAS~~~G~a~~~-----~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 145 FDLFVELGATDE-----QLDFPIVYASARNGTASLD-----PEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred HHHHHHhCCChh-----hCCCcEEEeeccCceeccC-----ccccccchhHHHHHHHHhCCCCC
Confidence 222222221111 1247999998754433321 12223348899999999998654
No 260
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.14 E-value=1.8e-10 Score=105.98 Aligned_cols=93 Identities=22% Similarity=0.343 Sum_probs=71.9
Q ss_pred hhccccCCCChhhHHHHHHHHHHhhhcCC--CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC
Q 021699 9 REWMGIQQFPPATQTKLLELLGKLKQENV--NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG 86 (309)
Q Consensus 9 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~--~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g 86 (309)
....|...+..++..-..+.++.+...+. ..++++|+|-+||||||+||+|+|...+.+++.|+.|...+......
T Consensus 100 ~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~-- 177 (322)
T COG1161 100 KSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD-- 177 (322)
T ss_pred ecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC--
Confidence 33455556665555555567777777653 35899999999999999999999999999999999998877655443
Q ss_pred eEEEEEeCCCCCCCCCCc
Q 021699 87 FTLNIVDTPGLIEGGYVN 104 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~ 104 (309)
.+.++||||+.-....+
T Consensus 178 -~i~LlDtPGii~~~~~~ 194 (322)
T COG1161 178 -GIYLLDTPGIIPPKFDD 194 (322)
T ss_pred -CeEEecCCCcCCCCccc
Confidence 38999999998766555
No 261
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.12 E-value=9.4e-11 Score=99.85 Aligned_cols=71 Identities=23% Similarity=0.369 Sum_probs=52.1
Q ss_pred HHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCc--------ccccCCCCCCCeeEEEEeeeCCeEEEEEeCC
Q 021699 24 KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKA--------VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTP 95 (309)
Q Consensus 24 ~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~--------~~~~~~~~~t~~~~~~~~~~~g~~l~liDTP 95 (309)
.+.++++.+.+.-....+++++|.+|+|||||||+|++... ..++..+++|+.+....... .+.|||||
T Consensus 112 gi~eL~~~l~~~l~~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtP 188 (190)
T cd01855 112 GVEELINAIKKLAKKGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTP 188 (190)
T ss_pred CHHHHHHHHHHHhhcCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCc
Confidence 34455555554333557999999999999999999998643 34566778888877655532 58999999
Q ss_pred CC
Q 021699 96 GL 97 (309)
Q Consensus 96 G~ 97 (309)
|+
T Consensus 189 G~ 190 (190)
T cd01855 189 GI 190 (190)
T ss_pred CC
Confidence 96
No 262
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=7.5e-10 Score=88.36 Aligned_cols=127 Identities=16% Similarity=0.111 Sum_probs=79.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
-+|++++|..|.|||.|+..+..... .-......+.+.....+.++|+ ++.||||+|... ..+..+.+.
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kf-kDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQEr-------FRSVtRsYY- 79 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKF-KDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQER-------FRSVTRSYY- 79 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhh-cccccceeeeeecceeeeecCcEEEEEEeecccHHH-------HHHHHHHHh-
Confidence 37999999999999999998886542 1111111222333333445554 789999999832 223334444
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHH
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF 177 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~ 177 (309)
+++-..++|++++.....+.-..|+..++...... .-++++.||.|+.+..+++..+.
T Consensus 80 -RGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~n--IvviL~GnKkDL~~~R~VtflEA 137 (214)
T KOG0086|consen 80 -RGAAGALLVYDITSRDSFNALTNWLTDARTLASPN--IVVILCGNKKDLDPEREVTFLEA 137 (214)
T ss_pred -ccccceEEEEeccchhhHHHHHHHHHHHHhhCCCc--EEEEEeCChhhcChhhhhhHHHH
Confidence 68888899988865322233445666665554433 34667789999976666655543
No 263
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.12 E-value=7.3e-10 Score=105.59 Aligned_cols=130 Identities=22% Similarity=0.266 Sum_probs=90.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCe-eEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPR-PVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~-~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
..+.+||+++|..|+||||||-+|+.++. +...|..-.. .+.....-...+..|+||..- ........+.+
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef--~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~---~~~~~~l~~Ei--- 77 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEF--VDAVPRRLPRILIPADVTPENVPTSIVDTSSD---SDDRLCLRKEI--- 77 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhc--cccccccCCccccCCccCcCcCceEEEecccc---cchhHHHHHHH---
Confidence 34679999999999999999999998863 3333221110 011122234557899999833 22222334445
Q ss_pred hhcCCCcEEEEEEeCCc-cccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021699 115 LLNKTIDVLLYVDRLDV-YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~-~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
+++|++.+|+.+|. +.++.....|+-.+++.+|.....|+|+|.||+|+......+.+.
T Consensus 78 ---rkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~ 137 (625)
T KOG1707|consen 78 ---RKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEV 137 (625)
T ss_pred ---hhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhH
Confidence 58999999998876 457777788999999999988889999999999986554443343
No 264
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.12 E-value=1.1e-09 Score=105.16 Aligned_cols=167 Identities=17% Similarity=0.174 Sum_probs=94.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccC--CCCCCCe----------------eEEE-Eee---------------
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVST--FQSEGPR----------------PVMV-SRS--------------- 83 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~--~~~~t~~----------------~~~~-~~~--------------- 83 (309)
..++|.++|...+|||||+.+|+|........ ..+.|.+ +..+ ...
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 46999999999999999999999864321111 0011100 0000 000
Q ss_pred -eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEe
Q 021699 84 -RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 162 (309)
Q Consensus 84 -~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~t 162 (309)
.-...+.|+||||.. .+...+...+ ..+|++++|++++......+..+.+. +.+..|. +++|+|+|
T Consensus 113 ~~~~~~i~~IDtPGH~-------~fi~~m~~g~--~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lgi---~~iIVvlN 179 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHD-------ILMATMLNGA--AVMDAALLLIAANESCPQPQTSEHLA-AVEIMKL---KHIIILQN 179 (460)
T ss_pred ccccceEeeeeCCCHH-------HHHHHHHHHH--hhCCEEEEEEECCCCccchhhHHHHH-HHHHcCC---CcEEEEEe
Confidence 012468999999962 2222222112 58899999977764223333344443 3334443 57999999
Q ss_pred cccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHH
Q 021699 163 HAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITE 242 (309)
Q Consensus 163 k~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~ 242 (309)
|+|+.+++ ......+.+++++.... ....|++++|+. ++.+ ++.|++.+..
T Consensus 180 KiDlv~~~------~~~~~~~ei~~~l~~~~--------~~~~~iipVSA~----~G~n-----------I~~Ll~~L~~ 230 (460)
T PTZ00327 180 KIDLVKEA------QAQDQYEEIRNFVKGTI--------ADNAPIIPISAQ----LKYN-----------IDVVLEYICT 230 (460)
T ss_pred cccccCHH------HHHHHHHHHHHHHHhhc--------cCCCeEEEeeCC----CCCC-----------HHHHHHHHHh
Confidence 99986321 11222244555544321 123789988874 3332 6788888776
Q ss_pred HHhc
Q 021699 243 VVLN 246 (309)
Q Consensus 243 ~~~~ 246 (309)
.++.
T Consensus 231 ~lp~ 234 (460)
T PTZ00327 231 QIPI 234 (460)
T ss_pred hCCC
Confidence 5554
No 265
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=8.1e-10 Score=87.66 Aligned_cols=125 Identities=15% Similarity=0.132 Sum_probs=77.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEe--eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR--SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~--~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
-+||+|+|.+.+|||||+-+.++... ...-....+.+....+. ...-.++.||||+|... ++.+. ...
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSF-t~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEr--------yrtiT-Tay 90 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSF-TSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQER--------YRTIT-TAY 90 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhcccc-ccceeeeeeeeEEEeEeeecccEEEEEEEecccchh--------hhHHH-HHH
Confidence 47999999999999999999998763 21111122222222221 12234789999999943 12221 112
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
.+++++++++++++...--..-..+...++.....+ -++|+|.||||+-.+.-.+.+
T Consensus 91 yRgamgfiLmyDitNeeSf~svqdw~tqIktysw~n--aqvilvgnKCDmd~eRvis~e 147 (193)
T KOG0093|consen 91 YRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDN--AQVILVGNKCDMDSERVISHE 147 (193)
T ss_pred hhccceEEEEEecCCHHHHHHHHHHHHHheeeeccC--ceEEEEecccCCccceeeeHH
Confidence 269999999988865332233445555555544333 589999999998655444433
No 266
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.11 E-value=1.9e-10 Score=92.23 Aligned_cols=126 Identities=17% Similarity=0.127 Sum_probs=82.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.|+|+++|..-+|||||+-+...... ...+....-.........+++ ..+.||||+|...+-.... +.
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkF-n~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGP---------IY 82 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKF-NCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGP---------IY 82 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhc-chhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCc---------eE
Confidence 59999999999999999977775432 211111000111122222333 3789999999954322221 12
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHH
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
.++.+.+|+|++++.......-+.|+.+|+...|.. .-++||.||+|+.+...++.++
T Consensus 83 YRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGne--i~l~IVGNKiDLEeeR~Vt~qe 140 (218)
T KOG0088|consen 83 YRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNE--IELLIVGNKIDLEEERQVTRQE 140 (218)
T ss_pred EeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCe--eEEEEecCcccHHHhhhhhHHH
Confidence 268899999999865332355678999999999977 4789999999996555544443
No 267
>PRK13351 elongation factor G; Reviewed
Probab=99.11 E-value=1.1e-09 Score=110.81 Aligned_cols=114 Identities=16% Similarity=0.139 Sum_probs=75.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCccc--cc---------C------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVT--VS---------T------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~--~~---------~------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
..+|+|+|..|+|||||+++|+...... .+ + ..+.|.........+++..+.+|||||..+..
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~ 87 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFT 87 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHH
Confidence 4799999999999999999998532110 00 0 11223333344566788999999999985422
Q ss_pred CCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
......+ ..+|++++|++.+. .........++.+... + .|+++|+||+|+.
T Consensus 88 ---~~~~~~l------~~aD~~ilVvd~~~-~~~~~~~~~~~~~~~~-~----~p~iiviNK~D~~ 138 (687)
T PRK13351 88 ---GEVERSL------RVLDGAVVVFDAVT-GVQPQTETVWRQADRY-G----IPRLIFINKMDRV 138 (687)
T ss_pred ---HHHHHHH------HhCCEEEEEEeCCC-CCCHHHHHHHHHHHhc-C----CCEEEEEECCCCC
Confidence 1222222 57899999977653 3444555555554432 2 6899999999985
No 268
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.6e-09 Score=99.98 Aligned_cols=183 Identities=16% Similarity=0.194 Sum_probs=103.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCccc------------------------------ccCCCCCCCeeEEEEeeeCC
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVT------------------------------VSTFQSEGPRPVMVSRSRAG 86 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~------------------------------~~~~~~~t~~~~~~~~~~~g 86 (309)
...++++++|...+|||||+-.|+=.-... .....+.|.+.....++-+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 357999999999999999998887221000 00011223333344445566
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc------cChhHHHHHHHHHHHhCccccCcEEEE
Q 021699 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIWKRALIV 160 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~------~~~~d~~~l~~l~~~~g~~~~~~~iiV 160 (309)
..++|+|+||..|+ ..+.+.. ...+|+.++|++..... ...+.++.+ .|.+..|- ..+|++
T Consensus 85 ~~~tIiDaPGHrdF---vknmItG------asqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tlGi---~~lIVa 151 (428)
T COG5256 85 YNFTIIDAPGHRDF---VKNMITG------ASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTLGI---KQLIVA 151 (428)
T ss_pred ceEEEeeCCchHHH---HHHhhcc------hhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhcCC---ceEEEE
Confidence 68999999997432 1111111 15889999997775432 223334333 45555564 689999
Q ss_pred EecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCc--hHHHHH
Q 021699 161 LTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW--IPNLVK 238 (309)
Q Consensus 161 ~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w--~~~L~~ 238 (309)
+||+|+.+=++..+++.+ ..+..+++.+ ++.. ..++++++++ +.+.+..+.- +...| -+.|++
T Consensus 152 vNKMD~v~wde~rf~ei~----~~v~~l~k~~-G~~~-----~~v~FIPiSg----~~G~Nl~~~s-~~~pWY~GpTLle 216 (428)
T COG5256 152 VNKMDLVSWDEERFEEIV----SEVSKLLKMV-GYNP-----KDVPFIPISG----FKGDNLTKKS-ENMPWYKGPTLLE 216 (428)
T ss_pred EEcccccccCHHHHHHHH----HHHHHHHHHc-CCCc-----cCCeEEeccc----ccCCcccccC-cCCcCccCChHHH
Confidence 999998742222333333 3444444333 2322 2377888776 3443332222 34567 567777
Q ss_pred HHHHHHhcC
Q 021699 239 TITEVVLNG 247 (309)
Q Consensus 239 ~i~~~~~~~ 247 (309)
.+...-..+
T Consensus 217 aLd~~~~p~ 225 (428)
T COG5256 217 ALDQLEPPE 225 (428)
T ss_pred HHhccCCCC
Confidence 776444443
No 269
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.10 E-value=1.2e-09 Score=110.94 Aligned_cols=115 Identities=12% Similarity=0.184 Sum_probs=72.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccc---------ccCC------CCCCCeeE----EEEeeeCCeEEEEEeCCCCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT---------VSTF------QSEGPRPV----MVSRSRAGFTLNIVDTPGLI 98 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~---------~~~~------~~~t~~~~----~~~~~~~g~~l~liDTPG~~ 98 (309)
.-.+|+++|..|+|||||+++|+...... ..+. .+.|.... .......+..+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 44799999999999999999997431100 0011 12222221 12244567789999999996
Q ss_pred CCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 99 ~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+.. .+....+ ..+|++|+|++... .+...+..+++.+.+. + .|.++++||+|..
T Consensus 98 ~f~---~~~~~al------~~aD~~llVvda~~-g~~~~t~~~~~~~~~~-~----~p~ivviNKiD~~ 151 (720)
T TIGR00490 98 DFG---GDVTRAM------RAVDGAIVVVCAVE-GVMPQTETVLRQALKE-N----VKPVLFINKVDRL 151 (720)
T ss_pred ccH---HHHHHHH------HhcCEEEEEEecCC-CCCccHHHHHHHHHHc-C----CCEEEEEEChhcc
Confidence 532 2333333 58899999977643 3445555555544332 1 5788999999975
No 270
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.09 E-value=4.3e-10 Score=103.11 Aligned_cols=82 Identities=18% Similarity=0.242 Sum_probs=60.2
Q ss_pred EEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee------------------------CCeEEEEEeCCCC
Q 021699 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR------------------------AGFTLNIVDTPGL 97 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~------------------------~g~~l~liDTPG~ 97 (309)
|+++|.+|+|||||+|+|++... .+++++.+|..+......+ .+.++.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 57999999999999999999874 7788888887766543322 2357999999999
Q ss_pred CCCCCCc----HHHHHHHHHhhhcCCCcEEEEEEeCC
Q 021699 98 IEGGYVN----YHAIQLIKRFLLNKTIDVLLYVDRLD 130 (309)
Q Consensus 98 ~~~~~~~----~~~~~~i~~~~~~~~~d~il~v~~~d 130 (309)
....... .++++.+ +.+|++++|+++.
T Consensus 80 v~ga~~~~glg~~fL~~i------r~aD~ii~Vvd~~ 110 (318)
T cd01899 80 VPGAHEGKGLGNKFLDDL------RDADALIHVVDAS 110 (318)
T ss_pred CCCccchhhHHHHHHHHH------HHCCEEEEEEeCC
Confidence 6533211 2333333 5899999998875
No 271
>PTZ00416 elongation factor 2; Provisional
Probab=99.08 E-value=1.6e-09 Score=111.35 Aligned_cols=115 Identities=16% Similarity=0.203 Sum_probs=74.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCC---------------CCeeEEEEeeeC----------CeEEEEE
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE---------------GPRPVMVSRSRA----------GFTLNIV 92 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~---------------t~~~~~~~~~~~----------g~~l~li 92 (309)
.--+|+++|..++|||||+++|+...........+. |.........+. +..+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 345999999999999999999997543221111111 111111222232 5679999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 93 DTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 93 DTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
||||..+. ..+....+ ..+|++++|++... .+...+..+++.+.+. + .|+|+++||+|..
T Consensus 98 DtPG~~~f---~~~~~~al------~~~D~ailVvda~~-g~~~~t~~~~~~~~~~-~----~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDF---SSEVTAAL------RVTDGALVVVDCVE-GVCVQTETVLRQALQE-R----IRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhH---HHHHHHHH------hcCCeEEEEEECCC-CcCccHHHHHHHHHHc-C----CCEEEEEEChhhh
Confidence 99999542 12222222 58999999977643 4666777777666553 2 6899999999984
No 272
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.07 E-value=7.1e-10 Score=104.60 Aligned_cols=85 Identities=20% Similarity=0.267 Sum_probs=62.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEee---------------------eC---CeEEEEEeC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS---------------------RA---GFTLNIVDT 94 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~---------------------~~---g~~l~liDT 94 (309)
.++|+++|.+|+|||||+|+|++... .+++++.+|.++...... .+ ..++.++||
T Consensus 1 ~~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 1 MITIGLVGKPNVGKSTFFNAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcc-cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 37899999999999999999999864 667888888777664322 11 246899999
Q ss_pred CCCCCCCCCc----HHHHHHHHHhhhcCCCcEEEEEEeCC
Q 021699 95 PGLIEGGYVN----YHAIQLIKRFLLNKTIDVLLYVDRLD 130 (309)
Q Consensus 95 PG~~~~~~~~----~~~~~~i~~~~~~~~~d~il~v~~~d 130 (309)
||+.+..... .++++.+ +.+|++++|++..
T Consensus 80 aGl~~ga~~g~glg~~fL~~i------r~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLDDL------RQADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhhHHHHHHHHH------HHCCEEEEEEeCC
Confidence 9996543222 2333333 5899999998874
No 273
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.07 E-value=5.8e-10 Score=93.59 Aligned_cols=116 Identities=19% Similarity=0.263 Sum_probs=64.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~---~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
-.|+++|++|+|||+|...|..... +....+. .+ ...... .+..+.+||+||... ...+.++.+. .
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~--~~T~tS~--e~-n~~~~~~~~~~~~~~lvD~PGH~r---lr~~~~~~~~---~ 72 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKT--VPTVTSM--EN-NIAYNVNNSKGKKLRLVDIPGHPR---LRSKLLDELK---Y 72 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS-----B---S--SE-EEECCGSSTCGTCECEEEETT-HC---CCHHHHHHHH---H
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCc--CCeeccc--cC-CceEEeecCCCCEEEEEECCCcHH---HHHHHHHhhh---c
Confidence 4789999999999999999997742 1111111 12 122222 566899999999943 3444444321 1
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhC----ccccCcEEEEEecccCCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG----EQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g----~~~~~~~iiV~tk~D~~~ 168 (309)
...+.+|+||++ +..+...-.+..+.|...+- .....|++|+.||.|+..
T Consensus 73 ~~~~k~IIfvvD--Ss~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 73 LSNAKGIIFVVD--SSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp HGGEEEEEEEEE--TTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred hhhCCEEEEEEe--CccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 257899999955 32222222333444333221 122368999999999864
No 274
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.06 E-value=4e-10 Score=90.91 Aligned_cols=129 Identities=17% Similarity=0.107 Sum_probs=84.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.++++|+|.+-+|||||+..++....+..++ |..+.+....-++. .| .++.+|||+|...+.... +.+.
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsd-ptvgvdffarlie~~pg~riklqlwdtagqerfrsit-------ksyy 79 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSD-PTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSIT-------KSYY 79 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCC-CccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHH-------HHHh
Confidence 5899999999999999999999887655442 22222221111111 23 378999999994332222 2222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHH
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF 177 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~ 177 (309)
++.-.+++|++++.....+.-..|+++.....+.....-+.+|.+|+|+.....++.+|.
T Consensus 80 --rnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEa 139 (213)
T KOG0091|consen 80 --RNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEA 139 (213)
T ss_pred --hcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHH
Confidence 466778889888764433455677777776666333233567889999987777777764
No 275
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.04 E-value=4.7e-10 Score=90.97 Aligned_cols=56 Identities=34% Similarity=0.494 Sum_probs=45.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI 98 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~ 98 (309)
-+++++|.+|+|||||+|+|++.....++..++.|++...... ++ .+.||||||+.
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~i~DtpG~~ 139 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL--TP-TITLCDCPGLV 139 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe--CC-CEEEEECCCcC
Confidence 3899999999999999999999987777777777776554433 33 68999999984
No 276
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.04 E-value=6.6e-10 Score=93.09 Aligned_cols=58 Identities=26% Similarity=0.396 Sum_probs=47.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI 98 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~ 98 (309)
..++++++|.+|+|||||+|+|++.....++..+++|.....+... ..+.++||||+.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~~ 171 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGIL 171 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCCC
Confidence 4589999999999999999999998776777778888776665543 468999999983
No 277
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.00 E-value=6.8e-09 Score=85.76 Aligned_cols=141 Identities=18% Similarity=0.213 Sum_probs=85.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccC----CCCCCCeeEE-----EEeeeCC-eEEEEEeCCCCCCCCCCcHHH
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVST----FQSEGPRPVM-----VSRSRAG-FTLNIVDTPGLIEGGYVNYHA 107 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~----~~~~t~~~~~-----~~~~~~g-~~l~liDTPG~~~~~~~~~~~ 107 (309)
.+.+|+|+|..|+||||++.++.......+.. ....+.++.+ ....+.+ ..+.++||||...+.+..
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~--- 85 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW--- 85 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH---
Confidence 46899999999999999999999876433311 1111122222 2233344 689999999995443222
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHH
Q 021699 108 IQLIKRFLLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALL 186 (309)
Q Consensus 108 ~~~i~~~~~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~ 186 (309)
+.+. +++...++++ |.++ .+..+..++..+..... .|+++..||.|+.+. .+. +.++
T Consensus 86 -----~~l~-~ga~gaivlV--Dss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a--~pp--------e~i~ 143 (187)
T COG2229 86 -----EILS-RGAVGAIVLV--DSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDA--LPP--------EKIR 143 (187)
T ss_pred -----HHHh-CCcceEEEEE--ecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCC--CCH--------HHHH
Confidence 1111 5677777773 4333 33455667766665432 699999999998533 223 4455
Q ss_pred HhhcccccccccccccCCCcEEEecc
Q 021699 187 KFVSPSTWMKKKDIQGSFVPVVLVEN 212 (309)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~ipv~~v~~ 212 (309)
+++..+. ..+|++..++
T Consensus 144 e~l~~~~---------~~~~vi~~~a 160 (187)
T COG2229 144 EALKLEL---------LSVPVIEIDA 160 (187)
T ss_pred HHHHhcc---------CCCceeeeec
Confidence 5555442 1268876655
No 278
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.98 E-value=4.6e-09 Score=108.22 Aligned_cols=115 Identities=15% Similarity=0.186 Sum_probs=73.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCC---------------CCCeeEEEEeee----------------CC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS---------------EGPRPVMVSRSR----------------AG 86 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~---------------~t~~~~~~~~~~----------------~g 86 (309)
+--+|+|+|+.++|||||+++|+...........+ .|.........+ .+
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 45699999999999999999999654322111111 111111122222 25
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021699 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
..++++||||..|+. .+....+ ..+|++++|++... .+......+++.+.+. + .|+|+++||+|.
T Consensus 98 ~~inliDtPGh~dF~---~e~~~al------~~~D~ailVvda~~-Gv~~~t~~~~~~~~~~-~----~p~i~~iNK~D~ 162 (843)
T PLN00116 98 YLINLIDSPGHVDFS---SEVTAAL------RITDGALVVVDCIE-GVCVQTETVLRQALGE-R----IRPVLTVNKMDR 162 (843)
T ss_pred eEEEEECCCCHHHHH---HHHHHHH------hhcCEEEEEEECCC-CCcccHHHHHHHHHHC-C----CCEEEEEECCcc
Confidence 678999999994321 1222222 57899999977643 4556666666665443 2 689999999998
Q ss_pred C
Q 021699 167 S 167 (309)
Q Consensus 167 ~ 167 (309)
.
T Consensus 163 ~ 163 (843)
T PLN00116 163 C 163 (843)
T ss_pred c
Confidence 5
No 279
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.98 E-value=2.6e-08 Score=87.10 Aligned_cols=122 Identities=18% Similarity=0.068 Sum_probs=73.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC-CcccccC-CCCCCCeeEEEEeee---CCeEEEEEeCCCCCCCCCCc---HHHHH
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE-KAVTVST-FQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGGYVN---YHAIQ 109 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~-~~~~~~~-~~~~t~~~~~~~~~~---~g~~l~liDTPG~~~~~~~~---~~~~~ 109 (309)
.-.-|.|+|++++|||+|+|.|+|. +.+.+++ ..++|+......... .+..+.++||||+.+..... +..+-
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 4467899999999999999999998 2444443 456666555444444 35789999999998765533 11121
Q ss_pred HHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHH-----------hCccccCcEEEEEecccC
Q 021699 110 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDN-----------FGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 110 ~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~-----------~g~~~~~~~iiV~tk~D~ 166 (309)
.+.. --.+++||. .+. .....+...+..+.+. ........+++|+--+++
T Consensus 86 ~l~~----llss~~i~n--~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~ 146 (224)
T cd01851 86 ALAT----LLSSVLIYN--SWE-TILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSL 146 (224)
T ss_pred HHHH----HHhCEEEEe--ccC-cccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcC
Confidence 2211 135778877 333 2334444444444331 122333456777766654
No 280
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.98 E-value=1.8e-09 Score=85.68 Aligned_cols=128 Identities=13% Similarity=0.074 Sum_probs=80.1
Q ss_pred HHHHHHhhhcC-CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc
Q 021699 26 LELLGKLKQEN-VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 104 (309)
Q Consensus 26 ~~~~~~~~~~~-~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~ 104 (309)
.+++..++..- ..++.+.++|-.++||||++|.++.... ... -..|.-.-...++.+...+.+||.||...+....
T Consensus 6 ~k~L~wi~~~f~k~emel~lvGLq~sGKtt~Vn~ia~g~~-~ed--miptvGfnmrk~tkgnvtiklwD~gGq~rfrsmW 82 (186)
T KOG0075|consen 6 RKKLVWICNSFWKEEMELSLVGLQNSGKTTLVNVIARGQY-LED--MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW 82 (186)
T ss_pred HHHHHHHHHHHHHheeeEEEEeeccCCcceEEEEEeeccc-hhh--hcccccceeEEeccCceEEEEEecCCCccHHHHH
Confidence 34444444422 2579999999999999999999987543 111 1223334445566788899999999996544333
Q ss_pred HHHHHHHHHhhhcCCCcEEEEEEeC-CccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 105 YHAIQLIKRFLLNKTIDVLLYVDRL-DVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 105 ~~~~~~i~~~~~~~~~d~il~v~~~-d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+.+. +++++++||++. |...++..-.++...+.+-. -...|++++.||.|+.
T Consensus 83 eryc---------R~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~--l~gip~LVLGnK~d~~ 135 (186)
T KOG0075|consen 83 ERYC---------RGVSAIVYVVDAADPDKLEASRSELHDLLDKPS--LTGIPLLVLGNKIDLP 135 (186)
T ss_pred HHHh---------hcCcEEEEEeecCCcccchhhHHHHHHHhcchh--hcCCcEEEecccccCc
Confidence 3221 689999999665 32223333333333333221 1226999999999973
No 281
>PRK12289 GTPase RsgA; Reviewed
Probab=98.96 E-value=1e-09 Score=101.82 Aligned_cols=71 Identities=28% Similarity=0.424 Sum_probs=50.3
Q ss_pred HHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCC-------CCCeeEEEEeeeCCeEEEEEeCCC
Q 021699 24 KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPG 96 (309)
Q Consensus 24 ~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~l~liDTPG 96 (309)
.+.++++.+.. -.++++|.+|||||||||+|++.....++..++ +|++...+...-++ .|+||||
T Consensus 162 GI~eL~~~L~~-----ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG 233 (352)
T PRK12289 162 GLEALLEQLRN-----KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPG 233 (352)
T ss_pred CHHHHhhhhcc-----ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCC
Confidence 44555555543 248999999999999999999987767776665 56655444432222 7999999
Q ss_pred CCCCCC
Q 021699 97 LIEGGY 102 (309)
Q Consensus 97 ~~~~~~ 102 (309)
+...+.
T Consensus 234 ~~~~~l 239 (352)
T PRK12289 234 FNQPDL 239 (352)
T ss_pred cccccc
Confidence 976554
No 282
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.96 E-value=7.9e-10 Score=93.40 Aligned_cols=116 Identities=19% Similarity=0.188 Sum_probs=82.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-Ce--EEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~--~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
..++++|||..++|||+++....... +.....|.. .+.......++ |. .+.+|||+|..+.+. ++ .
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~-fp~~yvPTV-Fdnys~~v~V~dg~~v~L~LwDTAGqedYDr--------lR-p 71 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNA-FPEEYVPTV-FDNYSANVTVDDGKPVELGLWDTAGQEDYDR--------LR-P 71 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCc-CcccccCeE-EccceEEEEecCCCEEEEeeeecCCCccccc--------cc-c
Confidence 35899999999999999987777553 233222222 23444455564 65 578999999976533 22 2
Q ss_pred hhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 115 LLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++.+.+|+||+|++++.. ++.+....|+.++...+.. .|+|+|+||.|+.
T Consensus 72 lsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 72 LSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLR 122 (198)
T ss_pred cCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhh
Confidence 345799999999988653 3555567788888888744 6999999999996
No 283
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=3.3e-08 Score=94.10 Aligned_cols=114 Identities=13% Similarity=0.116 Sum_probs=85.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---g~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
.+.-|.++|.-..|||||+..|-+.++. .+...+.|.+..-+....+ ...++|+||||. +.+..++.-
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va-~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH--------eAFt~mRaR 74 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH--------EAFTAMRAR 74 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccc-cccCCceeeEeeeEEEEeccCCCceEEEEcCCcH--------HHHHHHHhc
Confidence 3567899999999999999999998863 3445567787777777763 468999999998 344444321
Q ss_pred hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
- ..=+|++++|+++|. .+.++..+.++.++.. + .|+++++||+|..
T Consensus 75 G-a~vtDIaILVVa~dD-Gv~pQTiEAI~hak~a-~----vP~iVAiNKiDk~ 120 (509)
T COG0532 75 G-ASVTDIAILVVAADD-GVMPQTIEAINHAKAA-G----VPIVVAINKIDKP 120 (509)
T ss_pred C-CccccEEEEEEEccC-CcchhHHHHHHHHHHC-C----CCEEEEEecccCC
Confidence 0 124699999988875 5777777777666554 3 7999999999985
No 284
>PRK12288 GTPase RsgA; Reviewed
Probab=98.94 E-value=2.7e-09 Score=99.00 Aligned_cols=73 Identities=26% Similarity=0.381 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCC-------CCCeeEEEEeeeCCeEEEEEeCC
Q 021699 23 TKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTP 95 (309)
Q Consensus 23 ~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~l~liDTP 95 (309)
+.+.++...+.. -.++++|.+|||||||||+|++.....++..+. +|+....+.+..+ ..|+|||
T Consensus 194 ~GideL~~~L~~-----ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTP 265 (347)
T PRK12288 194 EGLEELEAALTG-----RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSP 265 (347)
T ss_pred cCHHHHHHHHhh-----CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECC
Confidence 344555555543 137899999999999999999987766666543 3333333333222 3599999
Q ss_pred CCCCCCCC
Q 021699 96 GLIEGGYV 103 (309)
Q Consensus 96 G~~~~~~~ 103 (309)
|+.+.+..
T Consensus 266 Gir~~~l~ 273 (347)
T PRK12288 266 GVREFGLW 273 (347)
T ss_pred CCCcccCC
Confidence 99887653
No 285
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.94 E-value=2e-08 Score=102.16 Aligned_cols=115 Identities=12% Similarity=0.184 Sum_probs=72.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCC---------------CCCCeeEEEEeee----CCeEEEEEeCCCCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ---------------SEGPRPVMVSRSR----AGFTLNIVDTPGLI 98 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~---------------~~t~~~~~~~~~~----~g~~l~liDTPG~~ 98 (309)
.--+|+++|..++|||||+.+|+........... +.|.......+.+ .+..++|+||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 3458999999999999999999864322111111 1122222122222 36679999999996
Q ss_pred CCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 99 ~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+. ..+....+ ..+|++++|++... .+...+..+++...+. + .|.|+++||+|..
T Consensus 99 df---~~~~~~~l------~~~D~avlVvda~~-g~~~~t~~~~~~~~~~-~----~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 DF---GGDVTRAM------RAVDGAIVVVDAVE-GVMPQTETVLRQALRE-R----VKPVLFINKVDRL 152 (731)
T ss_pred Ch---HHHHHHHH------HhcCEEEEEEECCC-CCCccHHHHHHHHHHc-C----CCeEEEEECchhh
Confidence 63 22333333 57899999977643 3556666666654333 2 4779999999975
No 286
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=6.6e-08 Score=91.84 Aligned_cols=146 Identities=14% Similarity=0.167 Sum_probs=94.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEE--EeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV--SRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~--~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.+--|-|+|....|||||+.+|-+..++. +...+.|.+.--+ +.. .|..++|.||||. .++..++.-
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA-~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGH--------aAF~aMRaR- 220 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAA-GEAGGITQHIGAFTVTLP-SGKSITFLDTPGH--------AAFSAMRAR- 220 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceeh-hhcCCccceeceEEEecC-CCCEEEEecCCcH--------HHHHHHHhc-
Confidence 46679999999999999999999988643 3344556654433 344 7889999999998 344444321
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
-..-.|.+++|+..|. ++-++..+.++..+.. ..|+|+.+||+|.. +.+.+. ..++++......
T Consensus 221 GA~vtDIvVLVVAadD-GVmpQT~EaIkhAk~A-----~VpiVvAinKiDkp---~a~pek-------v~~eL~~~gi~~ 284 (683)
T KOG1145|consen 221 GANVTDIVVLVVAADD-GVMPQTLEAIKHAKSA-----NVPIVVAINKIDKP---GANPEK-------VKRELLSQGIVV 284 (683)
T ss_pred cCccccEEEEEEEccC-CccHhHHHHHHHHHhc-----CCCEEEEEeccCCC---CCCHHH-------HHHHHHHcCccH
Confidence 1135799999988875 5656666666555443 27999999999953 334443 333444433111
Q ss_pred cccccccCCCcEEEeccc
Q 021699 196 KKKDIQGSFVPVVLVENS 213 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~ 213 (309)
+++ --.++++++++.
T Consensus 285 --E~~-GGdVQvipiSAl 299 (683)
T KOG1145|consen 285 --EDL-GGDVQVIPISAL 299 (683)
T ss_pred --HHc-CCceeEEEeecc
Confidence 110 123788888773
No 287
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.92 E-value=7.3e-10 Score=91.19 Aligned_cols=73 Identities=27% Similarity=0.358 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCC-------CCCCCeeEEEEeeeCCeEEEEEeCC
Q 021699 23 TKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGPRPVMVSRSRAGFTLNIVDTP 95 (309)
Q Consensus 23 ~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~-------~~~t~~~~~~~~~~~g~~l~liDTP 95 (309)
+.+.++...++. =.++++|.+|||||||||+|++.....++.. .++|+....+.... ...|||||
T Consensus 24 ~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~---g~~iIDTP 95 (161)
T PF03193_consen 24 EGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD---GGYIIDTP 95 (161)
T ss_dssp TTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT---SEEEECSH
T ss_pred cCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC---CcEEEECC
Confidence 444444444444 4789999999999999999999854444332 23344433333322 35799999
Q ss_pred CCCCCCCC
Q 021699 96 GLIEGGYV 103 (309)
Q Consensus 96 G~~~~~~~ 103 (309)
|+.+.+..
T Consensus 96 Gf~~~~l~ 103 (161)
T PF03193_consen 96 GFRSFGLW 103 (161)
T ss_dssp HHHT--GC
T ss_pred CCCccccc
Confidence 99876544
No 288
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.4e-08 Score=98.49 Aligned_cols=118 Identities=16% Similarity=0.246 Sum_probs=76.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeE--------------------------------------
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV-------------------------------------- 78 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~-------------------------------------- 78 (309)
...++|++.|++++||||++|+++-+++.+.+.. ++|....
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~g-h~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIG-HTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCccccc-ccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 4679999999999999999999997765332221 1111000
Q ss_pred -----EEEeee-CC------eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHH
Q 021699 79 -----MVSRSR-AG------FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAIT 146 (309)
Q Consensus 79 -----~~~~~~-~g------~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~ 146 (309)
...+-+ ++ -.+.++|.||+.-+...+.. +-.+. ..+|+++||..... .++..+++++....
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tsw----id~~c--ldaDVfVlV~NaEn-tlt~sek~Ff~~vs 258 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSW----IDSFC--LDADVFVLVVNAEN-TLTLSEKQFFHKVS 258 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHH----HHHHh--hcCCeEEEEecCcc-HhHHHHHHHHHHhh
Confidence 000001 01 14789999999543333322 22222 48999999966543 58888898888777
Q ss_pred HHhCccccCcEEEEEecccCC
Q 021699 147 DNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 147 ~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+. + +++.|+.||||..
T Consensus 259 ~~--K---pniFIlnnkwDas 274 (749)
T KOG0448|consen 259 EE--K---PNIFILNNKWDAS 274 (749)
T ss_pred cc--C---CcEEEEechhhhh
Confidence 65 1 5777888999985
No 289
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.91 E-value=5.4e-09 Score=86.01 Aligned_cols=58 Identities=26% Similarity=0.342 Sum_probs=44.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~ 97 (309)
....+++++|.+|+||||++|++.+.....+++.+++|.....+. .+..+.+|||||+
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~DtpGi 156 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVK---ITSKIYLLDTPGV 156 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEE---cCCCEEEEECcCC
Confidence 356899999999999999999999887666676666665433222 2336999999996
No 290
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=2.1e-08 Score=95.13 Aligned_cols=160 Identities=18% Similarity=0.146 Sum_probs=102.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcc--------------cccCCCCCCCeeEEEEeeeCC---eEEEEEeCCCCCCCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAV--------------TVSTFQSEGPRPVMVSRSRAG---FTLNIVDTPGLIEGGY 102 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~--------------~~~~~~~~t~~~~~~~~~~~g---~~l~liDTPG~~~~~~ 102 (309)
-++.||.....|||||..+|+....+ .+....+.|...++..+.+.+ .-+++|||||.-|++.
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~ 140 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG 140 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence 37899999999999999999853221 112234567777777777766 7899999999988765
Q ss_pred CcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhh
Q 021699 103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRS 182 (309)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~ 182 (309)
.-.. .+ .-++.+|+|++... ++..+....+. ..|..+ ..+|+|+||+|+...+ .+.. .
T Consensus 141 EVsR---sl------aac~G~lLvVDA~q-GvqAQT~anf~---lAfe~~--L~iIpVlNKIDlp~ad---pe~V----~ 198 (650)
T KOG0462|consen 141 EVSR---SL------AACDGALLVVDASQ-GVQAQTVANFY---LAFEAG--LAIIPVLNKIDLPSAD---PERV----E 198 (650)
T ss_pred eehe---hh------hhcCceEEEEEcCc-CchHHHHHHHH---HHHHcC--CeEEEeeeccCCCCCC---HHHH----H
Confidence 4332 22 36788899955432 34444433222 222222 5799999999985332 3332 2
Q ss_pred HHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021699 183 EALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 183 ~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
..+.+++..+ .-+++.+++. ++.+ +.++++.|++.++.-
T Consensus 199 ~q~~~lF~~~-----------~~~~i~vSAK----~G~~-----------v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 199 NQLFELFDIP-----------PAEVIYVSAK----TGLN-----------VEELLEAIIRRVPPP 237 (650)
T ss_pred HHHHHHhcCC-----------ccceEEEEec----cCcc-----------HHHHHHHHHhhCCCC
Confidence 4555666543 2378888775 3433 567888888877653
No 291
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=2.3e-08 Score=78.85 Aligned_cols=127 Identities=17% Similarity=0.127 Sum_probs=78.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCC-CCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
-|+-+++|..|+|||.|+..++.... ..+.|.+ +....+..+++.|. ++.||||+|...+ ....+.+.
T Consensus 11 ifkyiiigdmgvgkscllhqftekkf--madcphtigvefgtriievsgqkiklqiwdtagqerf-------ravtrsyy 81 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF-------RAVTRSYY 81 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHH--hhcCCcccceecceeEEEecCcEEEEEEeecccHHHH-------HHHHHHHh
Confidence 37889999999999999999886652 3333332 33333334455554 6799999998332 22233333
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHH
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFC 178 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~ 178 (309)
+++...|.|++++..+.-..-..|+...+..... ..-++++.||+|+....++++++..
T Consensus 82 --rgaagalmvyditrrstynhlsswl~dar~ltnp--nt~i~lignkadle~qrdv~yeeak 140 (215)
T KOG0097|consen 82 --RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIFLIGNKADLESQRDVTYEEAK 140 (215)
T ss_pred --ccccceeEEEEehhhhhhhhHHHHHhhhhccCCC--ceEEEEecchhhhhhcccCcHHHHH
Confidence 5788889998887522112222333333333222 1346678899999888888888653
No 292
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.90 E-value=1e-09 Score=89.88 Aligned_cols=124 Identities=14% Similarity=0.090 Sum_probs=81.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.++++|+|..++||||+|.+....- +..+.......+.......+ ....+.+|||+|..+.+..... +.
T Consensus 20 aiK~vivGng~VGKssmiqryCkgi-fTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkA-------yy- 90 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGI-FTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKA-------YY- 90 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccc-cccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHH-------Hh-
Confidence 4999999999999999999998652 22222222222222222222 3345789999999665433322 22
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
+++.++++|++.+..-..+.-.+|.+.+...++. .|+++|-||+|+.+....+.+
T Consensus 91 -rgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~---IPtV~vqNKIDlveds~~~~~ 145 (246)
T KOG4252|consen 91 -RGAQASVLVFSTTDRYSFEATLEWYNKVQKETER---IPTVFVQNKIDLVEDSQMDKG 145 (246)
T ss_pred -ccccceEEEEecccHHHHHHHHHHHHHHHHHhcc---CCeEEeeccchhhHhhhcchH
Confidence 6888999997764322225567788888877765 799999999999755544433
No 293
>PRK12740 elongation factor G; Reviewed
Probab=98.89 E-value=2.3e-08 Score=101.04 Aligned_cols=109 Identities=16% Similarity=0.198 Sum_probs=70.6
Q ss_pred EeCCCCCHHHHHHHHhCCCccccc--C---------------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 021699 45 MGKGGVGKSSTVNSIIGEKAVTVS--T---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 107 (309)
Q Consensus 45 vG~~g~GKSSliN~l~g~~~~~~~--~---------------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~ 107 (309)
+|+.|+|||||+|+|+........ . ..+.|.........+.+..+.+|||||..+. ..+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~---~~~~ 77 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDF---TGEV 77 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHH---HHHH
Confidence 599999999999999754322111 0 1222333344566778999999999998531 1222
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 108 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 108 ~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
...+ ..+|++++|++... .....+...+..+... + .|+++|+||+|...
T Consensus 78 ~~~l------~~aD~vllvvd~~~-~~~~~~~~~~~~~~~~-~----~p~iiv~NK~D~~~ 126 (668)
T PRK12740 78 ERAL------RVLDGAVVVVCAVG-GVEPQTETVWRQAEKY-G----VPRIIFVNKMDRAG 126 (668)
T ss_pred HHHH------HHhCeEEEEEeCCC-CcCHHHHHHHHHHHHc-C----CCEEEEEECCCCCC
Confidence 2222 47899999977653 3445555555554432 2 68999999999853
No 294
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.88 E-value=6.2e-09 Score=97.37 Aligned_cols=102 Identities=25% Similarity=0.318 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCC-----cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 021699 23 TKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEK-----AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97 (309)
Q Consensus 23 ~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~-----~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~ 97 (309)
..+.++++.+.+.. ...+++++|.+|||||||+|+|++.. ...++..+++|.....+.. +..+.++||||+
T Consensus 139 ~gv~eL~~~l~~~~-~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~---~~~~~l~DtPG~ 214 (360)
T TIGR03597 139 NGIDELLDKIKKAR-NKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL---DDGHSLYDTPGI 214 (360)
T ss_pred CCHHHHHHHHHHHh-CCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe---CCCCEEEECCCC
Confidence 34555555554321 23699999999999999999999853 3467788888887665443 224689999999
Q ss_pred CCCCCCcHHH-HHHHHHhhhcCCCcEEEEEEe
Q 021699 98 IEGGYVNYHA-IQLIKRFLLNKTIDVLLYVDR 128 (309)
Q Consensus 98 ~~~~~~~~~~-~~~i~~~~~~~~~d~il~v~~ 128 (309)
.......... .+.++........+.+.|..+
T Consensus 215 ~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~ 246 (360)
T TIGR03597 215 INSHQMAHYLDKKDLKYITPKKEIKPKTYQLN 246 (360)
T ss_pred CChhHhhhhcCHHHHhhcCCCCccCceEEEeC
Confidence 7643211100 011122223346677777744
No 295
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.88 E-value=4.5e-09 Score=93.20 Aligned_cols=71 Identities=30% Similarity=0.353 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCC-------CCCCeeEEEEeeeCCeEEEEEeCC
Q 021699 23 TKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ-------SEGPRPVMVSRSRAGFTLNIVDTP 95 (309)
Q Consensus 23 ~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~-------~~t~~~~~~~~~~~g~~l~liDTP 95 (309)
+.+.++...+.. -.++++|.+|||||||||+|++.....++..+ ++|+....+.. .+ -.|+|||
T Consensus 109 ~gi~eLf~~l~~-----~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtP 179 (245)
T TIGR00157 109 DGLKELIEALQN-----RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTP 179 (245)
T ss_pred hhHHHHHhhhcC-----CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCC
Confidence 345555554443 37899999999999999999998655544432 35665555444 22 3799999
Q ss_pred CCCCCCC
Q 021699 96 GLIEGGY 102 (309)
Q Consensus 96 G~~~~~~ 102 (309)
|+.+.+.
T Consensus 180 G~~~~~l 186 (245)
T TIGR00157 180 GFNEFGL 186 (245)
T ss_pred CccccCC
Confidence 9987553
No 296
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.87 E-value=2e-07 Score=88.24 Aligned_cols=119 Identities=19% Similarity=0.224 Sum_probs=72.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHh------CCCcccccCCCC-----------CCC--eeEEEEee----------------
Q 021699 39 TLTILVMGKGGVGKSSTVNSII------GEKAVTVSTFQS-----------EGP--RPVMVSRS---------------- 83 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~------g~~~~~~~~~~~-----------~t~--~~~~~~~~---------------- 83 (309)
+-.|+++|.+|+||||++..|. |.++..++..+. ... -+......
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 5679999999999999999887 554443332110 000 11111010
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEec
Q 021699 84 RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 163 (309)
Q Consensus 84 ~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk 163 (309)
..+..+.||||||.. ..++.....+........+|.+++|. |+. .........+.+.+.. .+.-+|+||
T Consensus 180 ~~~~DvViIDTaGr~---~~d~~lm~El~~i~~~~~p~e~lLVl--da~-~Gq~a~~~a~~F~~~~-----~~~g~IlTK 248 (429)
T TIGR01425 180 KENFDIIIVDTSGRH---KQEDSLFEEMLQVAEAIQPDNIIFVM--DGS-IGQAAEAQAKAFKDSV-----DVGSVIITK 248 (429)
T ss_pred hCCCCEEEEECCCCC---cchHHHHHHHHHHhhhcCCcEEEEEe--ccc-cChhHHHHHHHHHhcc-----CCcEEEEEC
Confidence 025689999999973 34445555665555445788999994 432 2233344555555433 467899999
Q ss_pred ccCCC
Q 021699 164 AQLSL 168 (309)
Q Consensus 164 ~D~~~ 168 (309)
.|...
T Consensus 249 lD~~a 253 (429)
T TIGR01425 249 LDGHA 253 (429)
T ss_pred ccCCC
Confidence 99753
No 297
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.86 E-value=1.4e-08 Score=78.67 Aligned_cols=100 Identities=25% Similarity=0.325 Sum_probs=63.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
||+++|..|+||+||.|+|-|..... +..+-..+...+ .|||||-. ..+...+..+.... ..+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly--------kKTQAve~~d~~----~IDTPGEy---~~~~~~Y~aL~tt~--~da 65 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY--------KKTQAVEFNDKG----DIDTPGEY---FEHPRWYHALITTL--QDA 65 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh--------cccceeeccCcc----ccCCchhh---hhhhHHHHHHHHHh--hcc
Confidence 78999999999999999999987422 111222222222 49999973 23334433333222 689
Q ss_pred cEEEEEEeCCcc--ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 121 DVLLYVDRLDVY--RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 121 d~il~v~~~d~~--~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
|++++|..++.. ++.+. +... ..+++|-|+||+|+.+
T Consensus 66 dvi~~v~~and~~s~f~p~-------f~~~----~~k~vIgvVTK~DLae 104 (148)
T COG4917 66 DVIIYVHAANDPESRFPPG-------FLDI----GVKKVIGVVTKADLAE 104 (148)
T ss_pred ceeeeeecccCccccCCcc-------cccc----cccceEEEEecccccc
Confidence 999999776532 22221 1122 2267999999999964
No 298
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.86 E-value=2.7e-08 Score=78.60 Aligned_cols=128 Identities=18% Similarity=0.197 Sum_probs=82.2
Q ss_pred HHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-eEEEEEeCCCCCCCCCC
Q 021699 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYV 103 (309)
Q Consensus 25 l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~l~liDTPG~~~~~~~ 103 (309)
+..++..++.....++||+++|-.++|||||+..|.+++.....+. .-......++.| .++++||.-|...-...
T Consensus 3 l~til~~~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT----~GFn~k~v~~~g~f~LnvwDiGGqr~IRpy 78 (185)
T KOG0074|consen 3 LETILCCCKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPT----NGFNTKKVEYDGTFHLNVWDIGGQRGIRPY 78 (185)
T ss_pred HHHHHHHhcCCCcceEEEEEEecCCCcchhHHHHHccCChhhcccc----CCcceEEEeecCcEEEEEEecCCccccchh
Confidence 4567788888888899999999999999999999999985433332 222333455555 79999999998432222
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 104 ~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
...++ .++|.++||++-... ++.+...+..+.+.+. +-...|+.+-.||.|+.
T Consensus 79 WsNYy---------envd~lIyVIDS~D~krfeE~~~el~ELleee--Kl~~vpvlIfankQdll 132 (185)
T KOG0074|consen 79 WSNYY---------ENVDGLIYVIDSTDEKRFEEISEELVELLEEE--KLAEVPVLIFANKQDLL 132 (185)
T ss_pred hhhhh---------hccceEEEEEeCCchHhHHHHHHHHHHHhhhh--hhhccceeehhhhhHHH
Confidence 22222 588999999664322 2322222333333221 12225777777888875
No 299
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.82 E-value=4.2e-09 Score=82.28 Aligned_cols=118 Identities=15% Similarity=0.106 Sum_probs=72.8
Q ss_pred EEEeCCCCCHHHHHHHHhCCCcccccCCCCC-CCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021699 43 LVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 43 ~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
+++|.+++|||.|+-+.-.... ..+.+-++ +.+.....+..++ .++.+|||+|...+...... +. +.
T Consensus 1 mllgds~~gktcllir~kdgaf-l~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~a-------yy--rd 70 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAF-LAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHA-------YY--RD 70 (192)
T ss_pred CccccCccCceEEEEEeccCce-ecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHh-------hh--cc
Confidence 4689999999998644333221 11222111 1222122223333 47899999999554333322 22 68
Q ss_pred CcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCC
Q 021699 120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 172 (309)
Q Consensus 120 ~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~ 172 (309)
+|++|+++++......+.-..|+..+.+..... ..++++.||+|+.++..+
T Consensus 71 a~allllydiankasfdn~~~wlsei~ey~k~~--v~l~llgnk~d~a~er~v 121 (192)
T KOG0083|consen 71 ADALLLLYDIANKASFDNCQAWLSEIHEYAKEA--VALMLLGNKCDLAHERAV 121 (192)
T ss_pred cceeeeeeecccchhHHHHHHHHHHHHHHHHhh--HhHhhhccccccchhhcc
Confidence 999999998865333356678999988764333 578999999999755443
No 300
>PRK13768 GTPase; Provisional
Probab=98.82 E-value=7.8e-08 Score=85.70 Aligned_cols=81 Identities=16% Similarity=0.067 Sum_probs=45.2
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+.+|||||..+...... ....+.+.+.....++++++++... ..+..+......+....-.....|+++|+||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~-~~~~~~~~l~~~~~~~ii~liD~~~-~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRE-SGRKLVERLSGSSKSVVVFLIDAVL-AKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhH-HHHHHHHHHHhcCCeEEEEEechHH-hCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 589999999865432221 1122223332223899999955432 23455544444332111111237999999999987
Q ss_pred CCC
Q 021699 168 LPD 170 (309)
Q Consensus 168 ~~~ 170 (309)
...
T Consensus 176 ~~~ 178 (253)
T PRK13768 176 SEE 178 (253)
T ss_pred Cch
Confidence 543
No 301
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.82 E-value=9.4e-08 Score=76.56 Aligned_cols=128 Identities=15% Similarity=0.196 Sum_probs=76.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CC--eEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
+.++++|+|.-++|||+++..|+=.+.........+-.+.+....+- .| ..+.|.||+|+.+....- =+.|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eL------prhy 81 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQEL------PRHY 81 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhh------hHhH
Confidence 45999999999999999998887544323333333333333333332 22 268999999996652111 1222
Q ss_pred hhcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
+ .-+|++++|++.+... |. -.+.++.-.+.+...-..|++++.|+.|..++.+.+.+
T Consensus 82 ~--q~aDafVLVYs~~d~eSf~--rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d 139 (198)
T KOG3883|consen 82 F--QFADAFVLVYSPMDPESFQ--RVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMD 139 (198)
T ss_pred h--ccCceEEEEecCCCHHHHH--HHHHHHHHHhhccccccccEEEEechhhcccchhcCHH
Confidence 2 5789999998875321 21 12223222222222223689999999999877655433
No 302
>PRK13796 GTPase YqeH; Provisional
Probab=98.81 E-value=1e-08 Score=96.14 Aligned_cols=72 Identities=29% Similarity=0.427 Sum_probs=51.2
Q ss_pred HHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC-----CcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCC
Q 021699 24 KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE-----KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI 98 (309)
Q Consensus 24 ~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~-----~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~ 98 (309)
.+.++++.+.+.. ..-++.++|.+|||||||||+|++. +...+++.+++|......... + ...++||||+.
T Consensus 146 gI~eL~~~I~~~~-~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~--~-~~~l~DTPGi~ 221 (365)
T PRK13796 146 GIDELLEAIEKYR-EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLD--D-GSFLYDTPGII 221 (365)
T ss_pred CHHHHHHHHHHhc-CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcC--C-CcEEEECCCcc
Confidence 3445555554321 2358999999999999999999964 234578889999887655442 2 25799999996
Q ss_pred C
Q 021699 99 E 99 (309)
Q Consensus 99 ~ 99 (309)
.
T Consensus 222 ~ 222 (365)
T PRK13796 222 H 222 (365)
T ss_pred c
Confidence 4
No 303
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.78 E-value=5.1e-08 Score=85.66 Aligned_cols=121 Identities=22% Similarity=0.285 Sum_probs=75.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH---HHHHHHHHh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY---HAIQLIKRF 114 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~---~~~~~i~~~ 114 (309)
...++++.|.+|+|||||+|.++......-... +.+...+......-|..+.++|.||++..++..+ ..-.....+
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k-~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y 213 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSK-SKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY 213 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcC-CCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence 458999999999999999999997653221111 1222222222233466899999999765433221 222333444
Q ss_pred hhc--CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 115 LLN--KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 115 ~~~--~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+.. .-.-+++++ |+. .+.+.|...+.++.+.. .|+.+|+||+|..
T Consensus 214 ~leR~nLv~~FLLv---d~sv~i~~~D~~~i~~~ge~~-----VP~t~vfTK~DK~ 261 (320)
T KOG2486|consen 214 LLERENLVRVFLLV---DASVPIQPTDNPEIAWLGENN-----VPMTSVFTKCDKQ 261 (320)
T ss_pred HHhhhhhheeeeee---eccCCCCCCChHHHHHHhhcC-----CCeEEeeehhhhh
Confidence 432 234445555 332 46677877777776653 7999999999974
No 304
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=3e-08 Score=90.93 Aligned_cols=85 Identities=21% Similarity=0.284 Sum_probs=66.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee------------C------CeEEEEEeCCCCCCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR------------A------GFTLNIVDTPGLIEG 100 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~------------~------g~~l~liDTPG~~~~ 100 (309)
.+++.|||.||||||||.|+++... +...++|.||.+|-.....+ . -..+.++|.+|+-.+
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 3789999999999999999999988 57889999998876543322 1 125799999999754
Q ss_pred ----CCCcHHHHHHHHHhhhcCCCcEEEEEEeCC
Q 021699 101 ----GYVNYHAIQLIKRFLLNKTIDVLLYVDRLD 130 (309)
Q Consensus 101 ----~~~~~~~~~~i~~~~~~~~~d~il~v~~~d 130 (309)
.....+.++.| +.+|+++.|++..
T Consensus 81 As~GeGLGNkFL~~I------RevdaI~hVVr~f 108 (372)
T COG0012 81 ASKGEGLGNKFLDNI------REVDAIIHVVRCF 108 (372)
T ss_pred cccCCCcchHHHHhh------hhcCeEEEEEEec
Confidence 34556777777 4899999997763
No 305
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=4e-08 Score=81.32 Aligned_cols=125 Identities=16% Similarity=0.193 Sum_probs=78.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
+.++++|+++|--|+||||+++.|--.+...+.+ |.-......++.+..+.+||.-|..........++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvP----TiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~------- 82 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVP----TIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYF------- 82 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccCCC----ccccceeEEEEcceEEEEEecCCCcccccchhhhc-------
Confidence 3467999999999999999999988776544422 23233335567799999999999944333332222
Q ss_pred hcCCCcEEEEEEeC-CccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHH
Q 021699 116 LNKTIDVLLYVDRL-DVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF 177 (309)
Q Consensus 116 ~~~~~d~il~v~~~-d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~ 177 (309)
+..++++||++- |..|+.+.-.++.+.+... .....|+++..||.|+ +...+..+.
T Consensus 83 --~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~--~l~~~~llv~aNKqD~--~~als~~ei 139 (181)
T KOG0070|consen 83 --QNTQGLIFVVDSSDRERIEEAKEELHRMLAEP--ELRNAPLLVFANKQDL--PGALSAAEI 139 (181)
T ss_pred --cCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCc--ccCCceEEEEechhhc--cccCCHHHH
Confidence 588999999553 3223433322222222221 1123688899999997 344444443
No 306
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.73 E-value=2.9e-08 Score=89.02 Aligned_cols=59 Identities=25% Similarity=0.456 Sum_probs=41.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCC-------CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 102 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~-------~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~ 102 (309)
..+++|.+|||||||+|+|.++....++.. .+||+....+.+.-+| .|+||||+.+.+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~l 231 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLGL 231 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccCc
Confidence 568889999999999999998754444432 2344444444433333 4899999987665
No 307
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.73 E-value=2e-08 Score=94.72 Aligned_cols=63 Identities=30% Similarity=0.442 Sum_probs=55.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 104 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~ 104 (309)
.++|.+||-+||||||+||+|.|.....|+..|+-|++.+++.+.. .+.+.|+||+--..+..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~LCDCPGLVfPSf~~ 376 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVCLCDCPGLVFPSFSP 376 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---CceecCCCCccccCCCc
Confidence 5999999999999999999999999999999999999998876543 58899999997665544
No 308
>PRK00098 GTPase RsgA; Reviewed
Probab=98.72 E-value=5.6e-08 Score=88.66 Aligned_cols=71 Identities=23% Similarity=0.289 Sum_probs=46.5
Q ss_pred HHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCC-------CCCeeEEEEeeeCCeEEEEEeCCC
Q 021699 24 KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPG 96 (309)
Q Consensus 24 ~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~l~liDTPG 96 (309)
.+.++...+. .-.++++|.+|+|||||+|+|+|.....++..+. +|+....+.... ...|+||||
T Consensus 154 gi~~L~~~l~-----gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~---~~~~~DtpG 225 (298)
T PRK00098 154 GLDELKPLLA-----GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG---GGLLIDTPG 225 (298)
T ss_pred cHHHHHhhcc-----CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC---CcEEEECCC
Confidence 4444444443 2468999999999999999999986555554432 444433333322 247999999
Q ss_pred CCCCCC
Q 021699 97 LIEGGY 102 (309)
Q Consensus 97 ~~~~~~ 102 (309)
+.+.+.
T Consensus 226 ~~~~~~ 231 (298)
T PRK00098 226 FSSFGL 231 (298)
T ss_pred cCccCC
Confidence 976443
No 309
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=2.7e-08 Score=80.06 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=68.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCC-CCC--CeeEEEEeee-----CC----eEEEEEeCCCCCCCCCCcHHH
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ-SEG--PRPVMVSRSR-----AG----FTLNIVDTPGLIEGGYVNYHA 107 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~-~~t--~~~~~~~~~~-----~g----~~l~liDTPG~~~~~~~~~~~ 107 (309)
++.+.+|.+|+||||++-..+.... .+.+- ..+ -+.....+.- .| ..+.+|||+|...+.
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F--~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFR------ 81 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKF--NTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFR------ 81 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcc--cceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHH------
Confidence 5678899999999999977776542 11111 111 1111111111 11 258999999984322
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 108 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 108 ~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
+....|. +.+-.+|++++++.....-+-..|+..++-+.=-+ ..-+|++.||+|+...
T Consensus 82 -SLTTAFf--RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE-~PDivlcGNK~DL~~~ 139 (219)
T KOG0081|consen 82 -SLTTAFF--RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCE-NPDIVLCGNKADLEDQ 139 (219)
T ss_pred -HHHHHHH--HhhccceEEEeccchHHHHHHHHHHHHHHHhhccC-CCCEEEEcCccchhhh
Confidence 2222233 46677888888765433344567777776542211 1468999999998543
No 310
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.68 E-value=1.3e-07 Score=87.69 Aligned_cols=84 Identities=20% Similarity=0.196 Sum_probs=66.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-----------------eEEEEEeCCCCCCCC-
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGG- 101 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~l~liDTPG~~~~~- 101 (309)
+++.|+|.+|+|||||.|+|++.....+.+++.+|..+......+.+ -.+.++|.||+....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 78999999999999999999999854677888888887766555443 258999999997643
Q ss_pred ---CCcHHHHHHHHHhhhcCCCcEEEEEEeC
Q 021699 102 ---YVNYHAIQLIKRFLLNKTIDVLLYVDRL 129 (309)
Q Consensus 102 ---~~~~~~~~~i~~~~~~~~~d~il~v~~~ 129 (309)
....+.+..+ +.+|++++|++.
T Consensus 83 ~g~Glgn~fL~~i------r~~d~l~hVvr~ 107 (368)
T TIGR00092 83 KGEGLGNQFLANI------REVDIIQHVVRC 107 (368)
T ss_pred cccCcchHHHHHH------HhCCEEEEEEeC
Confidence 2344566666 589999999876
No 311
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.67 E-value=8.8e-08 Score=86.94 Aligned_cols=59 Identities=24% Similarity=0.412 Sum_probs=40.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCC-------CCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ-------SEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~-------~~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
-.++++|.+|+|||||+|+|+|.....++... ++|.....+..... ..++||||+.+.+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 57999999999999999999998654444322 23444433333222 3699999997644
No 312
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=1.9e-07 Score=85.02 Aligned_cols=119 Identities=18% Similarity=0.327 Sum_probs=70.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcc--cccCCCCCCCeeEEEEee-----------------eCC--------------
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAV--TVSTFQSEGPRPVMVSRS-----------------RAG-------------- 86 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~--~~~~~~~~t~~~~~~~~~-----------------~~g-------------- 86 (309)
-=|+++|.-+.||||+||.|+..+.. .+++.|++..-....... +.|
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 45899999999999999999987632 233333332211111110 000
Q ss_pred --------eEEEEEeCCCCCCCCCCc-H---HHHHHHHHhhhcCCCcEEEEEEeCCccc--cChhHHHHHHHHHHHhCcc
Q 021699 87 --------FTLNIVDTPGLIEGGYVN-Y---HAIQLIKRFLLNKTIDVLLYVDRLDVYR--VDNLDKQITRAITDNFGEQ 152 (309)
Q Consensus 87 --------~~l~liDTPG~~~~~~~~-~---~~~~~i~~~~~~~~~d~il~v~~~d~~~--~~~~d~~~l~~l~~~~g~~ 152 (309)
..++||||||+.+..... . ..-..+.=|. .++|.|++++ |++. ++++-.+++..++ |.+
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFa--eR~D~IiLlf--D~hKLDIsdEf~~vi~aLk---G~E 211 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFA--ERVDRIILLF--DAHKLDISDEFKRVIDALK---GHE 211 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHH--HhccEEEEEe--chhhccccHHHHHHHHHhh---CCc
Confidence 127999999998654321 0 0111111111 6899999994 4444 4455455555554 433
Q ss_pred ccCcEEEEEecccCC
Q 021699 153 IWKRALIVLTHAQLS 167 (309)
Q Consensus 153 ~~~~~iiV~tk~D~~ 167 (309)
..+-+|+||+|.+
T Consensus 212 --dkiRVVLNKADqV 224 (532)
T KOG1954|consen 212 --DKIRVVLNKADQV 224 (532)
T ss_pred --ceeEEEecccccc
Confidence 5788999999986
No 313
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.65 E-value=2.5e-06 Score=77.92 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=29.5
Q ss_pred HHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhC
Q 021699 26 LELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 26 ~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.++++.+.........|+|+|.+|+|||||++.+..
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 456667766666778999999999999999999775
No 314
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=4.1e-07 Score=81.51 Aligned_cols=171 Identities=18% Similarity=0.188 Sum_probs=103.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccC-------------------CCCCCC-eeEEE--EeeeC------CeEE
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVST-------------------FQSEGP-RPVMV--SRSRA------GFTL 89 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~-------------------~~~~t~-~~~~~--~~~~~------g~~l 89 (309)
.+++|.++|....|||||..+|.|--....+. .+.|.. .++.. ..+.. -+.+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 56999999999999999999999852111110 111110 00000 00001 1368
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHhhhc-CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 90 NIVDTPGLIEGGYVNYHAIQLIKRFLLN-KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 90 ~liDTPG~~~~~~~~~~~~~~i~~~~~~-~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.|+|.||. +.+. ...++. .=-|..|+|+..+.....++..+-+-.|. ..|- +++|+|=||.|+..
T Consensus 89 SfVDaPGH--------e~LM--ATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Ale-Iigi---k~iiIvQNKIDlV~ 154 (415)
T COG5257 89 SFVDAPGH--------ETLM--ATMLSGAALMDGALLVIAANEPCPQPQTREHLMALE-IIGI---KNIIIVQNKIDLVS 154 (415)
T ss_pred EEeeCCch--------HHHH--HHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHh-hhcc---ceEEEEecccceec
Confidence 99999998 2221 112211 12388899977766555566665554443 3343 79999999999973
Q ss_pred CCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCC
Q 021699 169 PDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGS 248 (309)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~ 248 (309)
.+. ..+. -+.++++++... +.+.|++++++.- +. .++.|++.|.+..+...
T Consensus 155 ~E~-AlE~-----y~qIk~FvkGt~--------Ae~aPIIPiSA~~----~~-----------NIDal~e~i~~~IptP~ 205 (415)
T COG5257 155 RER-ALEN-----YEQIKEFVKGTV--------AENAPIIPISAQH----KA-----------NIDALIEAIEKYIPTPE 205 (415)
T ss_pred HHH-HHHH-----HHHHHHHhcccc--------cCCCceeeehhhh----cc-----------CHHHHHHHHHHhCCCCc
Confidence 321 2232 267778887542 2347999998741 11 27899998888887665
Q ss_pred Ccc
Q 021699 249 KAL 251 (309)
Q Consensus 249 ~~~ 251 (309)
+.+
T Consensus 206 rd~ 208 (415)
T COG5257 206 RDL 208 (415)
T ss_pred cCC
Confidence 544
No 315
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.60 E-value=6.6e-07 Score=93.00 Aligned_cols=103 Identities=10% Similarity=0.026 Sum_probs=66.3
Q ss_pred CCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC------------------eEEEEEeCCCCCCCCCCcHHHHHHH
Q 021699 50 VGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG------------------FTLNIVDTPGLIEGGYVNYHAIQLI 111 (309)
Q Consensus 50 ~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g------------------~~l~liDTPG~~~~~~~~~~~~~~i 111 (309)
++||||+.+|.+.++. .+...+.|.+.-.+....+. ..+.||||||..+. ..+
T Consensus 472 ~~KTtLLD~iR~t~v~-~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F--------~~l 542 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVA-KKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF--------TSL 542 (1049)
T ss_pred cccccHHHHHhCCCcc-cccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH--------HHH
Confidence 4699999999999863 33344555554333333221 13899999997332 111
Q ss_pred HHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 112 KRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 112 ~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+. .....+|++++|++++. .+...+...+..+... + .|+++|+||+|+.+
T Consensus 543 r~-~g~~~aDivlLVVDa~~-Gi~~qT~e~I~~lk~~-~----iPiIVViNKiDL~~ 592 (1049)
T PRK14845 543 RK-RGGSLADLAVLVVDINE-GFKPQTIEAINILRQY-K----TPFVVAANKIDLIP 592 (1049)
T ss_pred HH-hhcccCCEEEEEEECcc-cCCHhHHHHHHHHHHc-C----CCEEEEEECCCCcc
Confidence 11 11257899999987753 4666677777666543 2 69999999999864
No 316
>PTZ00099 rab6; Provisional
Probab=98.59 E-value=2.7e-06 Score=71.54 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=51.2
Q ss_pred EeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcE
Q 021699 81 SRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRA 157 (309)
Q Consensus 81 ~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~ 157 (309)
.+.+++ ..+.||||||......... .++ .++|++|+|++++.. ++... ..++..+....+.. .|+
T Consensus 21 ~~~~~~~~v~l~iwDt~G~e~~~~~~~-------~~~--~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~~~~~--~pi 88 (176)
T PTZ00099 21 TLYLDEGPVRLQLWDTAGQERFRSLIP-------SYI--RDSAAAIVVYDITNRQSFENT-TKWIQDILNERGKD--VII 88 (176)
T ss_pred EEEECCEEEEEEEEECCChHHhhhccH-------HHh--CCCcEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCC--CeE
Confidence 344444 4789999999854332221 222 689999999888643 24333 35666665554432 688
Q ss_pred EEEEecccCCCCCCCCH
Q 021699 158 LIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 158 iiV~tk~D~~~~~~~~~ 174 (309)
++|+||+|+......+.
T Consensus 89 ilVgNK~DL~~~~~v~~ 105 (176)
T PTZ00099 89 ALVGNKTDLGDLRKVTY 105 (176)
T ss_pred EEEEECcccccccCCCH
Confidence 99999999864333333
No 317
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.58 E-value=1.6e-07 Score=84.67 Aligned_cols=88 Identities=25% Similarity=0.332 Sum_probs=66.2
Q ss_pred cCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--------------C---eEEEEEeCCCC
Q 021699 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--------------G---FTLNIVDTPGL 97 (309)
Q Consensus 35 ~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--------------g---~~l~liDTPG~ 97 (309)
+..+.+++.+||.+|+|||||.|+|+.... ...++|.+|.+|........ + -.++++|++|+
T Consensus 16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a-~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL 94 (391)
T KOG1491|consen 16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKA-GAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL 94 (391)
T ss_pred CCCCcceeeEeeCCCCchHHHHHHHhcCCC-CccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence 445679999999999999999999999876 47889999887765444321 1 15899999999
Q ss_pred CCCCC----CcHHHHHHHHHhhhcCCCcEEEEEEeC
Q 021699 98 IEGGY----VNYHAIQLIKRFLLNKTIDVLLYVDRL 129 (309)
Q Consensus 98 ~~~~~----~~~~~~~~i~~~~~~~~~d~il~v~~~ 129 (309)
-.+.. .....++.+ +.+|+++.|++.
T Consensus 95 vkGAs~G~GLGN~FLs~i------R~vDaifhVVr~ 124 (391)
T KOG1491|consen 95 VKGASAGEGLGNKFLSHI------RHVDAIFHVVRA 124 (391)
T ss_pred ccCcccCcCchHHHHHhh------hhccceeEEEEe
Confidence 76433 344566666 478888888664
No 318
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.58 E-value=4.1e-07 Score=84.82 Aligned_cols=119 Identities=21% Similarity=0.225 Sum_probs=68.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC------CcccccCCCC---C----------CCeeEEEEee-------------eC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE------KAVTVSTFQS---E----------GPRPVMVSRS-------------RA 85 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~------~~~~~~~~~~---~----------t~~~~~~~~~-------------~~ 85 (309)
.+-.|+++|++|+||||++..|... .+..+...+. . ..-+...... ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 3468999999999999999988742 1111111000 0 0001010000 01
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhH-HHHHHHHHHHhCccccCcEEEEEecc
Q 021699 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD-KQITRAITDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 86 g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d-~~~l~~l~~~~g~~~~~~~iiV~tk~ 164 (309)
+..+.||||||.. ..+...++.+.+.+....+|.+++| +++. ....+ .++++.+.. + ..-=+++||.
T Consensus 320 ~~DvVLIDTaGRs---~kd~~lm~EL~~~lk~~~PdevlLV--LsAT-tk~~d~~~i~~~F~~-~-----~idglI~TKL 387 (436)
T PRK11889 320 RVDYILIDTAGKN---YRASETVEEMIETMGQVEPDYICLT--LSAS-MKSKDMIEIITNFKD-I-----HIDGIVFTKF 387 (436)
T ss_pred CCCEEEEeCcccc---CcCHHHHHHHHHHHhhcCCCeEEEE--ECCc-cChHHHHHHHHHhcC-C-----CCCEEEEEcc
Confidence 4579999999983 3445556666666655677888888 4432 22233 344444332 1 3567889999
Q ss_pred cCCC
Q 021699 165 QLSL 168 (309)
Q Consensus 165 D~~~ 168 (309)
|...
T Consensus 388 DET~ 391 (436)
T PRK11889 388 DETA 391 (436)
T ss_pred cCCC
Confidence 9753
No 319
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.58 E-value=7.6e-07 Score=76.23 Aligned_cols=71 Identities=21% Similarity=0.271 Sum_probs=45.3
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021699 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 86 g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
+..+.||||||. ...+.+..+.+++++....++-+++|.+... ...+...+....+.++ ..=+++||.|
T Consensus 83 ~~D~vlIDT~Gr---~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~---~~~~~~~~~~~~~~~~-----~~~lIlTKlD 151 (196)
T PF00448_consen 83 GYDLVLIDTAGR---SPRDEELLEELKKLLEALNPDEVHLVLSATM---GQEDLEQALAFYEAFG-----IDGLILTKLD 151 (196)
T ss_dssp TSSEEEEEE-SS---SSTHHHHHHHHHHHHHHHSSSEEEEEEEGGG---GGHHHHHHHHHHHHSS-----TCEEEEESTT
T ss_pred CCCEEEEecCCc---chhhHHHHHHHHHHhhhcCCccceEEEeccc---ChHHHHHHHHHhhccc-----CceEEEEeec
Confidence 457999999998 4445555566666554447788888855442 3445555555555543 4557799999
Q ss_pred CC
Q 021699 166 LS 167 (309)
Q Consensus 166 ~~ 167 (309)
..
T Consensus 152 et 153 (196)
T PF00448_consen 152 ET 153 (196)
T ss_dssp SS
T ss_pred CC
Confidence 85
No 320
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=1.2e-06 Score=77.78 Aligned_cols=152 Identities=13% Similarity=0.119 Sum_probs=92.8
Q ss_pred cCCCceEEEEEeCCCCCHHHHHHHHhCCCc---------------ccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCC
Q 021699 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKA---------------VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIE 99 (309)
Q Consensus 35 ~~~~~l~I~vvG~~g~GKSSliN~l~g~~~---------------~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~ 99 (309)
+...++||..+|..+.|||||..+|++.=. ++.....+.|..+....++-..+.+..+|+||..|
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence 445679999999999999999998885310 11111223455555666777888999999999843
Q ss_pred CCCCcHHHHHHHHHhhh-cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHH
Q 021699 100 GGYVNYHAIQLIKRFLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFC 178 (309)
Q Consensus 100 ~~~~~~~~~~~i~~~~~-~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~ 178 (309)
+++..+. ....|..|+|++.+.. .-++.++-+ .|.+..|- ..+++.+||+|+.+. ++.+
T Consensus 88 ----------YvKNMItgAaqmDgAILVVsA~dG-pmPqTrEHi-LlarqvGv---p~ivvflnK~Dmvdd-----~ell 147 (394)
T COG0050 88 ----------YVKNMITGAAQMDGAILVVAATDG-PMPQTREHI-LLARQVGV---PYIVVFLNKVDMVDD-----EELL 147 (394)
T ss_pred ----------HHHHHhhhHHhcCccEEEEEcCCC-CCCcchhhh-hhhhhcCC---cEEEEEEecccccCc-----HHHH
Confidence 2333331 1356777888776543 334444433 23444453 467888899999742 2333
Q ss_pred HhhhHHHHHhhcccccccccccccCCCcEEEecc
Q 021699 179 SKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVEN 212 (309)
Q Consensus 179 ~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~ 212 (309)
+...-+.++++... +|.....|++.-++
T Consensus 148 elVemEvreLLs~y------~f~gd~~Pii~gSa 175 (394)
T COG0050 148 ELVEMEVRELLSEY------GFPGDDTPIIRGSA 175 (394)
T ss_pred HHHHHHHHHHHHHc------CCCCCCcceeechh
Confidence 33346667777543 22334478876554
No 321
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.57 E-value=2.1e-06 Score=75.49 Aligned_cols=169 Identities=22% Similarity=0.279 Sum_probs=87.3
Q ss_pred HHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhC------CCcccc-----cCCCCC------------CCeeEEEE
Q 021699 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG------EKAVTV-----STFQSE------------GPRPVMVS 81 (309)
Q Consensus 25 l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g------~~~~~~-----~~~~~~------------t~~~~~~~ 81 (309)
..++++++-+...+.+.|.|.|.+|+|||||+++|.. ..++.. +++.+- ..++-.+.
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfI 94 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFI 94 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEE
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEE
Confidence 3467777777666789999999999999999999873 332221 111110 00111111
Q ss_pred ee----------------------eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc-cChhH
Q 021699 82 RS----------------------RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-VDNLD 138 (309)
Q Consensus 82 ~~----------------------~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~-~~~~d 138 (309)
.. ..|+.+.||.|-|.+.. +- .+. .-+|.+++|..+.... +...-
T Consensus 95 RS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQs---E~----~I~-----~~aD~~v~v~~Pg~GD~iQ~~K 162 (266)
T PF03308_consen 95 RSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQS---EV----DIA-----DMADTVVLVLVPGLGDEIQAIK 162 (266)
T ss_dssp EEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTH---HH----HHH-----TTSSEEEEEEESSTCCCCCTB-
T ss_pred eecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCcc---HH----HHH-----HhcCeEEEEecCCCccHHHHHh
Confidence 11 14777999999999532 11 122 5789999997765322 21111
Q ss_pred HHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccC
Q 021699 139 KQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAK 218 (309)
Q Consensus 139 ~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~ 218 (309)
.-+| +. .=++|+||+|.. . .+.. ...++..+.-. .........||+.+++. .
T Consensus 163 aGim----Ei-------aDi~vVNKaD~~-g----A~~~----~~~l~~~l~l~----~~~~~~W~ppV~~tsA~----~ 214 (266)
T PF03308_consen 163 AGIM----EI-------ADIFVVNKADRP-G----ADRT----VRDLRSMLHLL----REREDGWRPPVLKTSAL----E 214 (266)
T ss_dssp TTHH----HH--------SEEEEE--SHH-H----HHHH----HHHHHHHHHHC----STSCTSB--EEEEEBTT----T
T ss_pred hhhh----hh-------ccEEEEeCCChH-H----HHHH----HHHHHHHHhhc----cccccCCCCCEEEEEeC----C
Confidence 1122 22 357899999942 1 1111 13333333311 11112234688887763 3
Q ss_pred CcCCcccCCCCCCchHHHHHHHHHHH
Q 021699 219 NENDEKVLPNGTAWIPNLVKTITEVV 244 (309)
Q Consensus 219 ~~~~~~~l~~~~~w~~~L~~~i~~~~ 244 (309)
+.+ +++||+.|....
T Consensus 215 ~~G-----------i~eL~~~i~~~~ 229 (266)
T PF03308_consen 215 GEG-----------IDELWEAIDEHR 229 (266)
T ss_dssp TBS-----------HHHHHHHHHHHH
T ss_pred CCC-----------HHHHHHHHHHHH
Confidence 333 889999887764
No 322
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.57 E-value=2e-07 Score=83.51 Aligned_cols=127 Identities=16% Similarity=0.168 Sum_probs=78.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.+.-.|.|+|.||+|||||||+|++..... .+.-..|.+++.+.... .|..+.+.||-||.. ...-.....++..+
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p-~drLFATLDpT~h~a~Lpsg~~vlltDTvGFis--dLP~~LvaAF~ATL 252 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYP-NDRLFATLDPTLHSAHLPSGNFVLLTDTVGFIS--DLPIQLVAAFQATL 252 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCc-cchhheeccchhhhccCCCCcEEEEeechhhhh--hCcHHHHHHHHHHH
Confidence 445689999999999999999999765422 22223345555444443 577899999999953 23334444444333
Q ss_pred h-cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCc---cccCcEEEEEecccCC
Q 021699 116 L-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE---QIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~-~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~---~~~~~~iiV~tk~D~~ 167 (309)
. -..+|++|.|.++.......+....+..+.+. |- .....++=|-||.|..
T Consensus 253 eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e 307 (410)
T KOG0410|consen 253 EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYE 307 (410)
T ss_pred HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhccccccc
Confidence 2 25889999997765422333334455555443 42 1123466678888863
No 323
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.56 E-value=1.2e-07 Score=82.14 Aligned_cols=105 Identities=20% Similarity=0.345 Sum_probs=73.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh-hc
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-LN 117 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~-~~ 117 (309)
.-||+++|-|.+|||||+..|++..- ....+..+|..++...++++|-+|.++|.||+.++....... -++.+ ..
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~S-eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGR---GRQviavA 137 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHS-EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGR---GRQVIAVA 137 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchh-hhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCC---CceEEEEe
Confidence 46999999999999999999998753 445567788888888999999999999999998754433210 01111 12
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG 150 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g 150 (309)
+.+|++|.| +|+.. ++..+++++.-.+..|
T Consensus 138 rtaDlilMv--LDatk-~e~qr~~le~ELe~vG 167 (364)
T KOG1486|consen 138 RTADLILMV--LDATK-SEDQREILEKELEAVG 167 (364)
T ss_pred ecccEEEEE--ecCCc-chhHHHHHHHHHHHhc
Confidence 588999999 55432 2334445554444444
No 324
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.55 E-value=9.6e-07 Score=83.98 Aligned_cols=126 Identities=18% Similarity=0.292 Sum_probs=79.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCC-----------------------------------------------
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS----------------------------------------------- 72 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~----------------------------------------------- 72 (309)
.+|+|+|...+||||.+..+....+++-+...-
T Consensus 309 PRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~RMr 388 (980)
T KOG0447|consen 309 PRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRMR 388 (980)
T ss_pred ceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHHHH
Confidence 589999999999999999998765544333221
Q ss_pred ------CCCeeEEEEeeeCCe---EEEEEeCCCCCCCCC------CcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChh
Q 021699 73 ------EGPRPVMVSRSRAGF---TLNIVDTPGLIEGGY------VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNL 137 (309)
Q Consensus 73 ------~t~~~~~~~~~~~g~---~l~liDTPG~~~~~~------~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~ 137 (309)
+|..+.+....+.|. +.++||.||+..+-. ..+.+....+.++ .++++||+|+. |+ ++ +.
T Consensus 389 ~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM--~NPNAIILCIQ-DG-SV-DA 463 (980)
T KOG0447|consen 389 KNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYM--QNPNAIILCIQ-DG-SV-DA 463 (980)
T ss_pred hcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHh--cCCCeEEEEec-cC-Cc-ch
Confidence 122222334444443 578999999975321 1123333334444 78999999954 33 33 44
Q ss_pred HHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021699 138 DKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 138 d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
++..+..|...+.+ ..+.+|+|+||.|+.+.+-
T Consensus 464 ERSnVTDLVsq~DP-~GrRTIfVLTKVDlAEknl 496 (980)
T KOG0447|consen 464 ERSIVTDLVSQMDP-HGRRTIFVLTKVDLAEKNV 496 (980)
T ss_pred hhhhHHHHHHhcCC-CCCeeEEEEeecchhhhcc
Confidence 55555555554432 2378999999999975543
No 325
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=1.2e-06 Score=81.71 Aligned_cols=115 Identities=21% Similarity=0.150 Sum_probs=80.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCccc--ccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh-h
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVT--VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-L 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~--~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~-~ 116 (309)
+.|+..|.--.|||||+.+++|..... .....++|.+...+....+...+.+||+||..+. ++..+ .
T Consensus 1 mii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~----------i~~miag 70 (447)
T COG3276 1 MIIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF----------ISNLLAG 70 (447)
T ss_pred CeEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH----------HHHHHhh
Confidence 357889999999999999999975322 2223456666666666667778999999999331 12211 1
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
...+|.+++|++.|. .++.+..+.+..+ +.+|. ++.++|+||+|..++
T Consensus 71 ~~~~d~alLvV~~de-Gl~~qtgEhL~iL-dllgi---~~giivltk~D~~d~ 118 (447)
T COG3276 71 LGGIDYALLVVAADE-GLMAQTGEHLLIL-DLLGI---KNGIIVLTKADRVDE 118 (447)
T ss_pred hcCCceEEEEEeCcc-CcchhhHHHHHHH-HhcCC---CceEEEEeccccccH
Confidence 158899999987754 5777777666444 55665 688999999998633
No 326
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=9.7e-07 Score=88.44 Aligned_cols=114 Identities=12% Similarity=0.152 Sum_probs=76.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCccc--ccCC---------------CCCCCeeEEEEeeeCC-eEEEEEeCCCCCCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVT--VSTF---------------QSEGPRPVMVSRSRAG-FTLNIVDTPGLIEG 100 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~--~~~~---------------~~~t~~~~~~~~~~~g-~~l~liDTPG~~~~ 100 (309)
--+|.|+|+..+|||||.-+|+-..... .+.. .+.|......+..+.+ ..+++|||||.-|+
T Consensus 10 ~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDF 89 (697)
T COG0480 10 IRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDF 89 (697)
T ss_pred ceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcccc
Confidence 4689999999999999998888432111 1111 1223334445667786 99999999999776
Q ss_pred CCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.. +....+ .-+|.+++|++... .+..+.....+...+.. .|.++++||+|..
T Consensus 90 t~---EV~rsl------rvlDgavvVvdave-GV~~QTEtv~rqa~~~~-----vp~i~fiNKmDR~ 141 (697)
T COG0480 90 TI---EVERSL------RVLDGAVVVVDAVE-GVEPQTETVWRQADKYG-----VPRILFVNKMDRL 141 (697)
T ss_pred HH---HHHHHH------HhhcceEEEEECCC-CeeecHHHHHHHHhhcC-----CCeEEEEECcccc
Confidence 43 333334 35688888866654 45566555665555442 7999999999975
No 327
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=5.8e-06 Score=74.84 Aligned_cols=171 Identities=15% Similarity=0.244 Sum_probs=92.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCc-ccccCCCCCCCeeEEEEeee--------------CCeEEEEEeCCCCCCCCCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKA-VTVSTFQSEGPRPVMVSRSR--------------AGFTLNIVDTPGLIEGGYV 103 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~-~~~~~~~~~t~~~~~~~~~~--------------~g~~l~liDTPG~~~~~~~ 103 (309)
.+++.++|...+|||||..+|..-.- +.-..-+..+.+..+....+ +...+++||+||..
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa----- 81 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA----- 81 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH-----
Confidence 49999999999999999999874321 01111122222222211111 12256999999982
Q ss_pred cHHHHHHHHHhhh-cCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhh
Q 021699 104 NYHAIQLIKRFLL-NKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKR 181 (309)
Q Consensus 104 ~~~~~~~i~~~~~-~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~ 181 (309)
..|+..+. ..=+|..++|+++...- ....+.-++..+. -++.|+|+||.|.+++.. ....+++.
T Consensus 82 -----sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-------c~klvvvinkid~lpE~q--r~ski~k~ 147 (522)
T KOG0461|consen 82 -----SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-------CKKLVVVINKIDVLPENQ--RASKIEKS 147 (522)
T ss_pred -----HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-------ccceEEEEeccccccchh--hhhHHHHH
Confidence 22333331 23568889997765422 2222332332222 167999999999875532 12222222
Q ss_pred hHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhc
Q 021699 182 SEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246 (309)
Q Consensus 182 ~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~ 246 (309)
...+++.++.. .|.. ..|++.+++...++..++ +.+|.+.+..+...
T Consensus 148 ~kk~~KtLe~t-~f~g------~~PI~~vsa~~G~~~~~~-----------i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 148 AKKVRKTLEST-GFDG------NSPIVEVSAADGYFKEEM-----------IQELKEALESRIFE 194 (522)
T ss_pred HHHHHHHHHhc-CcCC------CCceeEEecCCCccchhH-----------HHHHHHHHHHhhcC
Confidence 33444444322 2322 379999988655544332 66777666655543
No 328
>PRK14974 cell division protein FtsY; Provisional
Probab=98.51 E-value=6.9e-06 Score=75.89 Aligned_cols=122 Identities=16% Similarity=0.253 Sum_probs=68.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC------CCcccccCCC--C------------CCCeeEEEEe---------------
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIG------EKAVTVSTFQ--S------------EGPRPVMVSR--------------- 82 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g------~~~~~~~~~~--~------------~t~~~~~~~~--------------- 82 (309)
.+..|+++|.+|+||||++..|.. ..+..+.... . ..........
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 467899999999999998877763 1221111100 0 0000000000
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEe
Q 021699 83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 162 (309)
Q Consensus 83 ~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~t 162 (309)
...+..+.||||||... .+...++.++.....-.+|.+++|.+... .....+..+...+.. ...-+|+|
T Consensus 219 ~~~~~DvVLIDTaGr~~---~~~~lm~eL~~i~~~~~pd~~iLVl~a~~---g~d~~~~a~~f~~~~-----~~~giIlT 287 (336)
T PRK14974 219 KARGIDVVLIDTAGRMH---TDANLMDELKKIVRVTKPDLVIFVGDALA---GNDAVEQAREFNEAV-----GIDGVILT 287 (336)
T ss_pred HhCCCCEEEEECCCccC---CcHHHHHHHHHHHHhhCCceEEEeecccc---chhHHHHHHHHHhcC-----CCCEEEEe
Confidence 11355799999999843 34455555655544457899999954421 122233333333332 35778999
Q ss_pred cccCCCCC
Q 021699 163 HAQLSLPD 170 (309)
Q Consensus 163 k~D~~~~~ 170 (309)
|.|....-
T Consensus 288 KlD~~~~~ 295 (336)
T PRK14974 288 KVDADAKG 295 (336)
T ss_pred eecCCCCc
Confidence 99986433
No 329
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.50 E-value=7e-06 Score=73.86 Aligned_cols=74 Identities=14% Similarity=0.167 Sum_probs=44.8
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh------cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEE
Q 021699 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL 158 (309)
Q Consensus 85 ~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~------~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~i 158 (309)
.+..+.||||||... .+...++.++.+.. ...+|.+++|++.. ....+........+.+ ...-
T Consensus 153 ~~~D~ViIDT~G~~~---~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~---~~~~~~~~~~~f~~~~-----~~~g 221 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQ---NKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT---TGQNALEQAKVFNEAV-----GLTG 221 (272)
T ss_pred CCCCEEEEeCCCCCc---chHHHHHHHHHHHHHHhcccCCCCceEEEEEECC---CCHHHHHHHHHHHhhC-----CCCE
Confidence 456899999999854 34444444444331 23488899996553 2233444444444433 3578
Q ss_pred EEEecccCCCC
Q 021699 159 IVLTHAQLSLP 169 (309)
Q Consensus 159 iV~tk~D~~~~ 169 (309)
+|+||.|....
T Consensus 222 ~IlTKlDe~~~ 232 (272)
T TIGR00064 222 IILTKLDGTAK 232 (272)
T ss_pred EEEEccCCCCC
Confidence 89999998533
No 330
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.49 E-value=2.3e-06 Score=75.26 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+.-|+|+|-.|+|||||+.+|.+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHH
Confidence 5789999999999999999888753
No 331
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=2e-06 Score=82.54 Aligned_cols=145 Identities=16% Similarity=0.209 Sum_probs=85.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHh---CCCc-----------cc----------------ccCCCCCCCeeEEEEeeeCC
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSII---GEKA-----------VT----------------VSTFQSEGPRPVMVSRSRAG 86 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~---g~~~-----------~~----------------~~~~~~~t~~~~~~~~~~~g 86 (309)
...++++++|...+|||||.-.|+ |.-- +. .....+.|.+..+..++-..
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 357999999999999999987776 2100 00 00111223333344445556
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCcccc----C--hhHHHHHHHHHHHhCccccCcEEEE
Q 021699 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV----D--NLDKQITRAITDNFGEQIWKRALIV 160 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~----~--~~d~~~l~~l~~~~g~~~~~~~iiV 160 (309)
..++|+|+||..++ .. ..+..+ ..+|+.++|+++....| . .+.++.+..+ +.+|. ..+||+
T Consensus 255 ~~~tliDaPGhkdF--i~-nmi~g~------sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~ll-r~Lgi---~qliva 321 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDF--IP-NMISGA------SQADVAVLVVDASTGEFESGFDPGGQTREHALLL-RSLGI---SQLIVA 321 (603)
T ss_pred eeEEEecCCCcccc--ch-hhhccc------cccceEEEEEECCcchhhhccCCCCchHHHHHHH-HHcCc---ceEEEE
Confidence 68999999997543 22 222222 47889889877644322 2 2234444333 45564 589999
Q ss_pred EecccCCCCCCCCHHHHHHhhhHHHHHhhccccccccc
Q 021699 161 LTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKK 198 (309)
Q Consensus 161 ~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 198 (309)
+||+|+.. ++-+.|. .....+..++.+.++|...
T Consensus 322 iNKmD~V~---Wsq~RF~-eIk~~l~~fL~~~~gf~es 355 (603)
T KOG0458|consen 322 INKMDLVS---WSQDRFE-EIKNKLSSFLKESCGFKES 355 (603)
T ss_pred eecccccC---ccHHHHH-HHHHHHHHHHHHhcCcccC
Confidence 99999873 3333332 2235677777555566543
No 332
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.45 E-value=9.5e-06 Score=74.58 Aligned_cols=119 Identities=20% Similarity=0.278 Sum_probs=63.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC------CcccccCCC-CC------------CCeeEEEEe----------------
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE------KAVTVSTFQ-SE------------GPRPVMVSR---------------- 82 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~------~~~~~~~~~-~~------------t~~~~~~~~---------------- 82 (309)
.+-.|+++|.+|+||||++..|.+. ++...+... .. ..-+.....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999888753 221111110 00 000111000
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh------hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCc
Q 021699 83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR 156 (309)
Q Consensus 83 ~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~------~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~ 156 (309)
...+..+.||||||.... +...++.++... ....+|-+++|.+... ...+..-.....+.. ..
T Consensus 193 ~~~~~D~ViIDTaGr~~~---~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~---g~~~~~~a~~f~~~~-----~~ 261 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHN---KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT---GQNALSQAKAFHEAV-----GL 261 (318)
T ss_pred HhCCCCEEEEeCCCCCcC---CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC---ChHHHHHHHHHHhhC-----CC
Confidence 124567999999998443 222223333222 1235778888855442 122222222322222 36
Q ss_pred EEEEEecccCC
Q 021699 157 ALIVLTHAQLS 167 (309)
Q Consensus 157 ~iiV~tk~D~~ 167 (309)
.-+|+||.|..
T Consensus 262 ~giIlTKlD~t 272 (318)
T PRK10416 262 TGIILTKLDGT 272 (318)
T ss_pred CEEEEECCCCC
Confidence 78999999975
No 333
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=3.3e-06 Score=66.83 Aligned_cols=120 Identities=16% Similarity=0.255 Sum_probs=71.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
++++|+.+|-.++||||++-.|.-+.. +...+. .-.-....++.+..+.+||.-|... .. ..-+.+.
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~--~~~ipT--vGFnvetVtykN~kfNvwdvGGqd~---iR----plWrhYy-- 82 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS--VTTIPT--VGFNVETVTYKNVKFNVWDVGGQDK---IR----PLWRHYY-- 82 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC--cccccc--cceeEEEEEeeeeEEeeeeccCchh---hh----HHHHhhc--
Confidence 579999999999999999988876542 222222 2223335567888999999999822 11 1112233
Q ss_pred CCCcEEEEEEeC-CccccChhHHHHHHHHHHHhCcc-c-cCcEEEEEecccCCCCCCCCHHH
Q 021699 118 KTIDVLLYVDRL-DVYRVDNLDKQITRAITDNFGEQ-I-WKRALIVLTHAQLSLPDRLDYEV 176 (309)
Q Consensus 118 ~~~d~il~v~~~-d~~~~~~~d~~~l~~l~~~~g~~-~-~~~~iiV~tk~D~~~~~~~~~~~ 176 (309)
++..++|||++. +..++.+. -.++....+.. + ..++++..||-|+. +..+..+
T Consensus 83 ~gtqglIFV~Dsa~~dr~eeA----r~ELh~ii~~~em~~~~~LvlANkQDlp--~A~~pqe 138 (180)
T KOG0071|consen 83 TGTQGLIFVVDSADRDRIEEA----RNELHRIINDREMRDAIILILANKQDLP--DAMKPQE 138 (180)
T ss_pred cCCceEEEEEeccchhhHHHH----HHHHHHHhCCHhhhcceEEEEecCcccc--cccCHHH
Confidence 688999999543 22222222 22333333321 1 13566777999983 4444444
No 334
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=7e-07 Score=75.65 Aligned_cols=119 Identities=17% Similarity=0.219 Sum_probs=70.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh-h
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-L 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~-~ 116 (309)
.+=.|+++|.+++|||+|.-.|..... .... +...+-...+.++...+.+||.||.. ... ..+..++ .
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~--~~Tv--tSiepn~a~~r~gs~~~~LVD~PGH~---rlR----~kl~e~~~~ 105 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSH--RGTV--TSIEPNEATYRLGSENVTLVDLPGHS---RLR----RKLLEYLKH 105 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCc--cCee--eeeccceeeEeecCcceEEEeCCCcH---HHH----HHHHHHccc
Confidence 346899999999999999988876531 1111 11223334445566678999999982 222 2222333 2
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHH----HHHhCccccCcEEEEEecccCCCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAI----TDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l----~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
...+-+++|| +|...+...-....+.+ ....+..-..|++++-||.|+...
T Consensus 106 ~~~akaiVFV--VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 106 NYSAKAIVFV--VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred cccceeEEEE--EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 2477889999 44434444433333333 333222223689999999998644
No 335
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=1.1e-06 Score=71.44 Aligned_cols=116 Identities=17% Similarity=0.235 Sum_probs=77.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
++=+++++|-.|+|||||++-|-..+.... -+|.+|.+....++|.+++.+|.-|.. ++...-+.|+
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qh----vPTlHPTSE~l~Ig~m~ftt~DLGGH~-------qArr~wkdyf-- 85 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQH----VPTLHPTSEELSIGGMTFTTFDLGGHL-------QARRVWKDYF-- 85 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccccc----CCCcCCChHHheecCceEEEEccccHH-------HHHHHHHHHH--
Confidence 457899999999999999998887664332 235666666788999999999999872 2222233444
Q ss_pred CCCcEEEEEEeC-CccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 118 KTIDVLLYVDRL-DVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~-d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|+++|.+++ |..++.+. +.-++.+... ..-.+.|+++..||+|...
T Consensus 86 ~~v~~iv~lvda~d~er~~es-~~eld~ll~~-e~la~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 86 PQVDAIVYLVDAYDQERFAES-KKELDALLSD-ESLATVPFLILGNKIDIPY 135 (193)
T ss_pred hhhceeEeeeehhhHHHhHHH-HHHHHHHHhH-HHHhcCcceeecccccCCC
Confidence 688999998665 44444332 2222222211 1123479999999999753
No 336
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.42 E-value=2.8e-06 Score=79.85 Aligned_cols=160 Identities=16% Similarity=0.194 Sum_probs=92.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCccc--------------ccCCCCCCCeeEEEEeeeC-----CeEEEEEeCCCCCCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVT--------------VSTFQSEGPRPVMVSRSRA-----GFTLNIVDTPGLIEGG 101 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~--------------~~~~~~~t~~~~~~~~~~~-----g~~l~liDTPG~~~~~ 101 (309)
+..++..-..|||||..+|+...... .....+.|...+.+...+. ...+.+|||||.-|+.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 56788899999999999998542211 1123345656555555542 2468999999998876
Q ss_pred CCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhh
Q 021699 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKR 181 (309)
Q Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~ 181 (309)
+.-.. .+ .-+...|+|++... ++.. +.+...-..+..+ .-+|.|+||+|+...+ .+..
T Consensus 91 YEVSR---SL------AACEGalLvVDAsQ-GveA---QTlAN~YlAle~~--LeIiPViNKIDLP~Ad---perv---- 148 (603)
T COG0481 91 YEVSR---SL------AACEGALLVVDASQ-GVEA---QTLANVYLALENN--LEIIPVLNKIDLPAAD---PERV---- 148 (603)
T ss_pred EEehh---hH------hhCCCcEEEEECcc-chHH---HHHHHHHHHHHcC--cEEEEeeecccCCCCC---HHHH----
Confidence 54332 22 24556677744432 2433 3333222222222 4699999999985332 2222
Q ss_pred hHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCC
Q 021699 182 SEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGS 248 (309)
Q Consensus 182 ~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~ 248 (309)
...+.+.|.-. . ...+.+|++ ++.+ ++++++.|+..++.-.
T Consensus 149 k~eIe~~iGid----~-------~dav~~SAK----tG~g-----------I~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 149 KQEIEDIIGID----A-------SDAVLVSAK----TGIG-----------IEDVLEAIVEKIPPPK 189 (603)
T ss_pred HHHHHHHhCCC----c-------chheeEecc----cCCC-----------HHHHHHHHHhhCCCCC
Confidence 23444555322 1 234445553 4433 7899999999887653
No 337
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.41 E-value=1.6e-06 Score=80.65 Aligned_cols=117 Identities=17% Similarity=0.192 Sum_probs=66.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCc--ccccCCCCCCCeeE-------------------EEEe----------eeCCe
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKA--VTVSTFQSEGPRPV-------------------MVSR----------SRAGF 87 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~--~~~~~~~~~t~~~~-------------------~~~~----------~~~g~ 87 (309)
.=.|++||+|||||||++-.|...-. .......-.|.+.+ .... ....+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 45789999999999999877764321 00000111111111 1111 02345
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC-CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021699 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK-TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~-~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
.+.+|||.|. +..+....+.++.++... .++..|.+ +.+. . .+-|+.+.+.|+.- ..--+++||.|.
T Consensus 283 d~ILVDTaGr---s~~D~~~i~el~~~~~~~~~i~~~Lvl-sat~---K---~~dlkei~~~f~~~--~i~~~I~TKlDE 350 (407)
T COG1419 283 DVILVDTAGR---SQYDKEKIEELKELIDVSHSIEVYLVL-SATT---K---YEDLKEIIKQFSLF--PIDGLIFTKLDE 350 (407)
T ss_pred CEEEEeCCCC---CccCHHHHHHHHHHHhccccceEEEEE-ecCc---c---hHHHHHHHHHhccC--CcceeEEEcccc
Confidence 7899999999 667777778888777433 44444444 3322 1 22344555555431 234578899997
Q ss_pred C
Q 021699 167 S 167 (309)
Q Consensus 167 ~ 167 (309)
.
T Consensus 351 T 351 (407)
T COG1419 351 T 351 (407)
T ss_pred c
Confidence 5
No 338
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.41 E-value=1e-06 Score=78.73 Aligned_cols=69 Identities=26% Similarity=0.335 Sum_probs=53.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC-----CcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE-----KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH 106 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~-----~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~ 106 (309)
.+.+++|+|-||+|||||||++... ..+.+++.++.|+.......-.+...+.++||||..-....+.+
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e 215 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVE 215 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHH
Confidence 5699999999999999999998743 44567888888876655333345557999999999887666655
No 339
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.40 E-value=2.6e-07 Score=81.54 Aligned_cols=75 Identities=17% Similarity=0.111 Sum_probs=32.6
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHH----HHHHhCccccCcEEEEEec
Q 021699 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRA----ITDNFGEQIWKRALIVLTH 163 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~----l~~~~g~~~~~~~iiV~tk 163 (309)
.+.|+||||+.+.-...+ ....+-+.+.....-+++++ +|...+++. ..++.. +.-... ...|.|.|+||
T Consensus 92 ~y~l~DtPGQiElf~~~~-~~~~i~~~L~~~~~~~~v~L--vD~~~~~~~-~~f~s~~L~s~s~~~~--~~lP~vnvlsK 165 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSD-SGRKIVERLQKNGRLVVVFL--VDSSFCSDP-SKFVSSLLLSLSIMLR--LELPHVNVLSK 165 (238)
T ss_dssp SEEEEE--SSHHHHHHSH-HHHHHHHTSSS----EEEEE--E-GGG-SSH-HHHHHHHHHHHHHHHH--HTSEEEEEE--
T ss_pred cEEEEeCCCCEEEEEech-hHHHHHHHHhhhcceEEEEE--EecccccCh-hhHHHHHHHHHHHHhh--CCCCEEEeeec
Confidence 589999999965333332 22223333333334456666 455444331 122221 111111 12699999999
Q ss_pred ccCCC
Q 021699 164 AQLSL 168 (309)
Q Consensus 164 ~D~~~ 168 (309)
+|+.+
T Consensus 166 ~Dl~~ 170 (238)
T PF03029_consen 166 IDLLS 170 (238)
T ss_dssp GGGS-
T ss_pred cCccc
Confidence 99975
No 340
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.37 E-value=1.2e-06 Score=75.04 Aligned_cols=124 Identities=20% Similarity=0.201 Sum_probs=73.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
=||+++|++|+||||+=-.++..-.+.-...++.|.+..+....+-| .-+.+||.-|... .-+.++..-+..+ -.
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~---fmen~~~~q~d~i-F~ 80 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEE---FMENYLSSQEDNI-FR 80 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHH---HHHHHHhhcchhh-he
Confidence 47999999999999987776654433333344555565555555444 6889999999831 1111111111100 14
Q ss_pred CCcEEEEEEeCCccccChhHHH----HHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021699 119 TIDVLLYVDRLDVYRVDNLDKQ----ITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~----~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
..+++++|+++....+ +.|.. .++.+.+.-. .-.+...++|.|+...+.
T Consensus 81 nV~vli~vFDves~e~-~~D~~~yqk~Le~ll~~SP---~AkiF~l~hKmDLv~~d~ 133 (295)
T KOG3886|consen 81 NVQVLIYVFDVESREM-EKDFHYYQKCLEALLQNSP---EAKIFCLLHKMDLVQEDA 133 (295)
T ss_pred eheeeeeeeeccchhh-hhhHHHHHHHHHHHHhcCC---cceEEEEEeechhcccch
Confidence 7899999977764323 23333 3334443322 246778889999985543
No 341
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.37 E-value=2.5e-07 Score=84.82 Aligned_cols=73 Identities=22% Similarity=0.357 Sum_probs=57.4
Q ss_pred HHHHHHHhhhc--CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 021699 25 LLELLGKLKQE--NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 25 l~~~~~~~~~~--~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~ 100 (309)
|..+|+.+.+. +...+.|.+||.+|+||||+||+|-...++.+.+.++.|...+..++. +.|.+||+||+--.
T Consensus 291 lI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLm---krIfLIDcPGvVyp 365 (572)
T KOG2423|consen 291 LIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLM---KRIFLIDCPGVVYP 365 (572)
T ss_pred HHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHH---hceeEecCCCccCC
Confidence 44455555543 346799999999999999999999999999999999998865544332 36899999999643
No 342
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.35 E-value=2.4e-05 Score=75.77 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
-.|+++|.+|+||||++..|..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999988874
No 343
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.35 E-value=4.3e-06 Score=77.77 Aligned_cols=118 Identities=19% Similarity=0.232 Sum_probs=66.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC------CcccccC--CCCC-----------CCeeEEEEee-------------eCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE------KAVTVST--FQSE-----------GPRPVMVSRS-------------RAG 86 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~------~~~~~~~--~~~~-----------t~~~~~~~~~-------------~~g 86 (309)
.-.|+++|++|+||||++..|... .+..++. +... ..-+...... ..+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~ 285 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNC 285 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCC
Confidence 346899999999999999887632 2211211 1110 0001111100 024
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021699 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
..+.||||||.. ..+.+.++.+..+.....+|.+++| +++ .....| ... +.+.|..- ...-+|+||.|.
T Consensus 286 ~D~VLIDTAGr~---~~d~~~l~EL~~l~~~~~p~~~~LV--Lsa-g~~~~d--~~~-i~~~f~~l--~i~glI~TKLDE 354 (407)
T PRK12726 286 VDHILIDTVGRN---YLAEESVSEISAYTDVVHPDLTCFT--FSS-GMKSAD--VMT-ILPKLAEI--PIDGFIITKMDE 354 (407)
T ss_pred CCEEEEECCCCC---ccCHHHHHHHHHHhhccCCceEEEE--CCC-cccHHH--HHH-HHHhcCcC--CCCEEEEEcccC
Confidence 689999999994 3455666667666654567887788 443 222223 222 22223321 356788999997
Q ss_pred C
Q 021699 167 S 167 (309)
Q Consensus 167 ~ 167 (309)
.
T Consensus 355 T 355 (407)
T PRK12726 355 T 355 (407)
T ss_pred C
Confidence 5
No 344
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.35 E-value=4.8e-06 Score=77.77 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.-.++++|++|+||||++..|.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999888753
No 345
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.33 E-value=5e-06 Score=88.86 Aligned_cols=139 Identities=18% Similarity=0.204 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHhhhcCC---Cc----eEEEEEeCCCCCHHHHHHHHhCCCcccccCC--------CCCCCeeEEEEeeeC
Q 021699 21 TQTKLLELLGKLKQENV---NT----LTILVMGKGGVGKSSTVNSIIGEKAVTVSTF--------QSEGPRPVMVSRSRA 85 (309)
Q Consensus 21 ~~~~l~~~~~~~~~~~~---~~----l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~--------~~~t~~~~~~~~~~~ 85 (309)
+++++.+-+..++.... .. -=.+|+|.+|+||||+|+.- |-+. ..... .+.|. .|..- -
T Consensus 86 l~~~~~~a~~~Lk~~~~~~~~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~~~~~~~~~~~~~~t~---~c~ww-f 159 (1169)
T TIGR03348 86 LRARFNEALALLKRSRLGGRRYLYDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLAERLGAAALRGVGGTR---NCDWW-F 159 (1169)
T ss_pred HHHHHHHHHHHHhhccccCchhhhcCCCEEEECCCCCchhHHHHhC-CCCC-cCchhhccccccCCCCCc---ccceE-e
Confidence 55666666666664321 11 12689999999999999876 4432 22110 01111 12221 2
Q ss_pred CeEEEEEeCCCCCCCCC----CcH----HHHHHHHHhhhcCCCcEEEEEEeCCcc-ccChhH--------HHHHHHHHHH
Q 021699 86 GFTLNIVDTPGLIEGGY----VNY----HAIQLIKRFLLNKTIDVLLYVDRLDVY-RVDNLD--------KQITRAITDN 148 (309)
Q Consensus 86 g~~l~liDTPG~~~~~~----~~~----~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~d--------~~~l~~l~~~ 148 (309)
..+.+++||+|..-... .+. ..+..++++-..+.+|.||++++++.- .-++.+ +.-+.++.+.
T Consensus 160 ~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~ 239 (1169)
T TIGR03348 160 TDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ 239 (1169)
T ss_pred cCCEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 23567999999764322 122 334444444445689999999876531 112222 3345566667
Q ss_pred hCccccCcEEEEEecccCC
Q 021699 149 FGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 149 ~g~~~~~~~iiV~tk~D~~ 167 (309)
+|-. .|+.+|+||+|+.
T Consensus 240 lg~~--~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 240 LGAR--FPVYLVLTKADLL 256 (1169)
T ss_pred hCCC--CCEEEEEecchhh
Confidence 7755 6999999999976
No 346
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=1.2e-05 Score=74.90 Aligned_cols=113 Identities=12% Similarity=0.164 Sum_probs=71.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHh--CCCcc-------------cccCC------CCCCCeeEEEEeeeCCeEEEEEeCCCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSII--GEKAV-------------TVSTF------QSEGPRPVMVSRSRAGFTLNIVDTPGLI 98 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~--g~~~~-------------~~~~~------~~~t~~~~~~~~~~~g~~l~liDTPG~~ 98 (309)
-+.+||-.+.+|||||.-.|+ |..+- .+|+. .+........++++++..++|+||||..
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 578999999999999997766 32211 11110 1111223345667899999999999996
Q ss_pred CCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 99 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 99 ~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
|+. +..++.+ .-+|+++.|++.- .++.+....+++ +.+..+ .|++-.+||+|-.
T Consensus 93 DFS---EDTYRtL------tAvDsAvMVIDaA-KGiE~qT~KLfe-VcrlR~----iPI~TFiNKlDR~ 146 (528)
T COG4108 93 DFS---EDTYRTL------TAVDSAVMVIDAA-KGIEPQTLKLFE-VCRLRD----IPIFTFINKLDRE 146 (528)
T ss_pred ccc---hhHHHHH------HhhheeeEEEecc-cCccHHHHHHHH-HHhhcC----CceEEEeeccccc
Confidence 653 2333333 3679999995542 246555555543 333333 6999999999963
No 347
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.28 E-value=3.3e-05 Score=69.07 Aligned_cols=37 Identities=30% Similarity=0.320 Sum_probs=31.9
Q ss_pred HHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhC
Q 021699 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 25 l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
-.+++.++.....+...|.|.|.+|+|||||+..|..
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~ 73 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGR 73 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHH
Confidence 3467888888777889999999999999999988873
No 348
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.27 E-value=1.5e-05 Score=80.37 Aligned_cols=120 Identities=13% Similarity=0.137 Sum_probs=62.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCccc-----ccCCCCCCCe----------------eEEEEe----------eeCCeE
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVT-----VSTFQSEGPR----------------PVMVSR----------SRAGFT 88 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~-----~~~~~~~t~~----------------~~~~~~----------~~~g~~ 88 (309)
--|+++|.+|+||||++..|.+.-... +.-....+.+ +..... ...+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 468999999999999998888642101 1000000000 000000 123457
Q ss_pred EEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccc-cCcEEEEEecccCC
Q 021699 89 LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQI-WKRALIVLTHAQLS 167 (309)
Q Consensus 89 l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~-~~~~iiV~tk~D~~ 167 (309)
+.||||||.. ..+....+.+........++-+++|++... .. +.+..+.+.|.... ....=+|+||.|..
T Consensus 266 ~VLIDTAGRs---~~d~~l~eel~~l~~~~~p~e~~LVLsAt~---~~---~~l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 266 LVLIDTVGMS---QRDRNVSEQIAMLCGVGRPVRRLLLLNAAS---HG---DTLNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred EEEEeCCCCC---ccCHHHHHHHHHHhccCCCCeEEEEECCCC---cH---HHHHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 9999999983 333444444444333345677788843321 12 22333333332110 02345789999975
Q ss_pred C
Q 021699 168 L 168 (309)
Q Consensus 168 ~ 168 (309)
.
T Consensus 337 ~ 337 (767)
T PRK14723 337 T 337 (767)
T ss_pred C
Confidence 3
No 349
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.27 E-value=8e-07 Score=81.72 Aligned_cols=74 Identities=24% Similarity=0.410 Sum_probs=57.5
Q ss_pred HHHHHHHHhhhcC--CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 021699 24 KLLELLGKLKQEN--VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 24 ~l~~~~~~~~~~~--~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~ 100 (309)
-+-++++..+..+ ...+++.|+|-+|+||||+||+|..+....+++.++.|+.-+.+. -+..|.|+|.||+.-.
T Consensus 235 ~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~---Ldk~i~llDsPgiv~~ 310 (435)
T KOG2484|consen 235 TLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK---LDKKIRLLDSPGIVPP 310 (435)
T ss_pred HHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee---ccCCceeccCCceeec
Confidence 3445555544432 357999999999999999999999999999999999887655443 3557999999999643
No 350
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.27 E-value=8.5e-06 Score=74.09 Aligned_cols=120 Identities=16% Similarity=0.130 Sum_probs=72.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCccc----------ccC----------------------CCCCCCeeEEEEeee
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVT----------VST----------------------FQSEGPRPVMVSRSR 84 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~----------~~~----------------------~~~~t~~~~~~~~~~ 84 (309)
...||++-+|...-||||||-+|+-..... .+. .++.|.+.....+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 467999999999999999999998532111 010 011122222222223
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh-cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEec
Q 021699 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 163 (309)
Q Consensus 85 ~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~-~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk 163 (309)
..+++.|.||||.. ++ .+.... ...+|+.+++++.-. .+.++.++ -..+....|- +++++.+||
T Consensus 84 ~KRkFIiADTPGHe-------QY---TRNMaTGASTadlAIlLVDAR~-Gvl~QTrR-Hs~I~sLLGI---rhvvvAVNK 148 (431)
T COG2895 84 EKRKFIIADTPGHE-------QY---TRNMATGASTADLAILLVDARK-GVLEQTRR-HSFIASLLGI---RHVVVAVNK 148 (431)
T ss_pred ccceEEEecCCcHH-------HH---hhhhhcccccccEEEEEEecch-hhHHHhHH-HHHHHHHhCC---cEEEEEEee
Confidence 56789999999982 22 222221 247898888855421 34333332 3345555564 799999999
Q ss_pred ccCCCCCC
Q 021699 164 AQLSLPDR 171 (309)
Q Consensus 164 ~D~~~~~~ 171 (309)
+|+.+=++
T Consensus 149 mDLvdy~e 156 (431)
T COG2895 149 MDLVDYSE 156 (431)
T ss_pred ecccccCH
Confidence 99974443
No 351
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.26 E-value=8.5e-06 Score=77.27 Aligned_cols=119 Identities=14% Similarity=0.145 Sum_probs=62.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcc-----cccCCCCCCCe----------------eEEE----------EeeeCCe
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAV-----TVSTFQSEGPR----------------PVMV----------SRSRAGF 87 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~-----~~~~~~~~t~~----------------~~~~----------~~~~~g~ 87 (309)
.=.|+++|++|+||||++..|.+.... .+.-....+.+ +... .....+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 348999999999999999988764110 00000000000 0000 0012455
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+.+|||+|... .+....+.+..+......+-.++|++... ... .+..+...|..- ...=+++||.|..
T Consensus 271 d~VLIDTaGrsq---rd~~~~~~l~~l~~~~~~~~~~LVl~at~---~~~---~~~~~~~~f~~~--~~~~~I~TKlDEt 339 (420)
T PRK14721 271 HMVLIDTVGMSQ---RDQMLAEQIAMLSQCGTQVKHLLLLNATS---SGD---TLDEVISAYQGH--GIHGCIITKVDEA 339 (420)
T ss_pred CEEEecCCCCCc---chHHHHHHHHHHhccCCCceEEEEEcCCC---CHH---HHHHHHHHhcCC--CCCEEEEEeeeCC
Confidence 789999999843 33344455554432234555667733321 122 223333444321 3556889999975
Q ss_pred C
Q 021699 168 L 168 (309)
Q Consensus 168 ~ 168 (309)
.
T Consensus 340 ~ 340 (420)
T PRK14721 340 A 340 (420)
T ss_pred C
Confidence 3
No 352
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.22 E-value=3.8e-05 Score=73.40 Aligned_cols=119 Identities=21% Similarity=0.178 Sum_probs=65.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC------CCcccccCCC--CC-----------CCeeEEEEe--------------ee
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIG------EKAVTVSTFQ--SE-----------GPRPVMVSR--------------SR 84 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g------~~~~~~~~~~--~~-----------t~~~~~~~~--------------~~ 84 (309)
.+..|+++|.+|+||||++-.|.. ..+..++... .. ...+..... ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 467899999999999999876652 2222111110 00 000111000 01
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecc
Q 021699 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 85 ~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~ 164 (309)
.+..+.||||||.. ..++..++.++.......+|.+++|++... .. +.+.... .|.... ...-+|+||.
T Consensus 174 ~~~DvVIIDTAGr~---~~d~~lm~El~~l~~~~~pdevlLVvda~~---gq---~av~~a~-~F~~~l-~i~gvIlTKl 242 (437)
T PRK00771 174 KKADVIIVDTAGRH---ALEEDLIEEMKEIKEAVKPDEVLLVIDATI---GQ---QAKNQAK-AFHEAV-GIGGIIITKL 242 (437)
T ss_pred hcCCEEEEECCCcc---cchHHHHHHHHHHHHHhcccceeEEEeccc---cH---HHHHHHH-HHHhcC-CCCEEEEecc
Confidence 23478999999984 345555555555443347888899955432 12 2233322 233221 2456889999
Q ss_pred cCC
Q 021699 165 QLS 167 (309)
Q Consensus 165 D~~ 167 (309)
|..
T Consensus 243 D~~ 245 (437)
T PRK00771 243 DGT 245 (437)
T ss_pred cCC
Confidence 974
No 353
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=6e-06 Score=68.67 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=75.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCC--CeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG--PRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t--~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
-.++++++|..|.||+|++++.+..+.... ..++.+ .++.......+..++.+|||.|....+...+.++ |
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~-y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyy--I---- 81 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKT-YPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYY--I---- 81 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceec-ccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccE--E----
Confidence 358999999999999999999987764222 222222 2232222223347899999999965443332211 1
Q ss_pred hcCCCcEEEEEEeCCccccC-hhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 116 LNKTIDVLLYVDRLDVYRVD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~-~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..-|.++++++.. +++ .+-.+|-+.+.+.++. .|++++.||.|..
T Consensus 82 ---~~qcAiimFdVts-r~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi~ 127 (216)
T KOG0096|consen 82 ---QGQCAIIMFDVTS-RFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDIK 127 (216)
T ss_pred ---ecceeEEEeeeee-hhhhhcchHHHHHHHHHhcC---CCeeeeccceecc
Confidence 3455566655654 332 4455677778888775 6999999999974
No 354
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.16 E-value=3.9e-05 Score=66.18 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
....|+++|..|+|||||++.++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999864
No 355
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.16 E-value=1.3e-05 Score=76.49 Aligned_cols=116 Identities=17% Similarity=0.184 Sum_probs=59.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC--------CcccccCCCCC-------------CCeeEEEEe----------eeCCeEE
Q 021699 41 TILVMGKGGVGKSSTVNSIIGE--------KAVTVSTFQSE-------------GPRPVMVSR----------SRAGFTL 89 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~--------~~~~~~~~~~~-------------t~~~~~~~~----------~~~g~~l 89 (309)
.++++|++|+||||++..|... .+..+...+.. ..-+..... ...+..+
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~Dl 302 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCDV 302 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCCE
Confidence 7899999999999988766532 12111111100 000000000 1235679
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHhhh-cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 90 NIVDTPGLIEGGYVNYHAIQLIKRFLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 90 ~liDTPG~~~~~~~~~~~~~~i~~~~~-~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.||||||.. ..+......+..++. ....+-+.+|++.. ....+ +..+.+.|..- ...-+++||.|..
T Consensus 303 VlIDt~G~~---~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~---~~~~~---l~~~~~~f~~~--~~~~vI~TKlDet 370 (424)
T PRK05703 303 ILIDTAGRS---QRDKRLIEELKALIEFSGEPIDVYLVLSAT---TKYED---LKDIYKHFSRL--PLDGLIFTKLDET 370 (424)
T ss_pred EEEeCCCCC---CCCHHHHHHHHHHHhccCCCCeEEEEEECC---CCHHH---HHHHHHHhCCC--CCCEEEEeccccc
Confidence 999999983 334444445555543 22334455553332 22222 22333344321 2346889999974
No 356
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=7.9e-06 Score=67.07 Aligned_cols=118 Identities=13% Similarity=0.109 Sum_probs=69.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCc-----ccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKA-----VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIK 112 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~-----~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~ 112 (309)
+.+.|+|+|..++|||||+-++-..-. ..++.. .+|..-...+..+.+..+.+||.-|........+.++
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki-~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY---- 90 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKI-TPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYY---- 90 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHe-ecccceeecceeeccceeEEEEcCChHHHHHHHHHHH----
Confidence 469999999999999999976653311 011111 1222233445566778899999999832222221111
Q ss_pred HhhhcCCCcEEEEEEeCCc-cccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 113 RFLLNKTIDVLLYVDRLDV-YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 113 ~~~~~~~~d~il~v~~~d~-~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|+++|+++... .++. .....++.+... ......|+++..||.|+.
T Consensus 91 -----~~~H~ii~viDa~~~eR~~-~~~t~~~~v~~~-E~leg~p~L~lankqd~q 139 (197)
T KOG0076|consen 91 -----WLAHGIIYVIDATDRERFE-ESKTAFEKVVEN-EKLEGAPVLVLANKQDLQ 139 (197)
T ss_pred -----HHhceeEEeecCCCHHHHH-HHHHHHHHHHHH-HHhcCCchhhhcchhhhh
Confidence 47799999966543 3342 223333333221 111126999999999974
No 357
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.13 E-value=3.2e-05 Score=69.40 Aligned_cols=117 Identities=21% Similarity=0.225 Sum_probs=65.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC------CcccccCCCC-----------C-CCe-eEEEEee-------------eCCe
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE------KAVTVSTFQS-----------E-GPR-PVMVSRS-------------RAGF 87 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~------~~~~~~~~~~-----------~-t~~-~~~~~~~-------------~~g~ 87 (309)
-+++++|++|+||||++..|.+. .+..++.... . ... +...... ..+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 59999999999999998877643 1111111000 0 000 0000000 1256
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhH-HHHHHHHHHHhCccccCcEEEEEecccC
Q 021699 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD-KQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d-~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
.+.||||||.. ..+.+.++.+.+++....++-+++|.+.. ....| .++++ .|.. ...-=+++||.|.
T Consensus 156 D~ViIDt~Gr~---~~~~~~l~el~~~~~~~~~~~~~LVl~a~---~~~~d~~~~~~----~f~~--~~~~~~I~TKlDe 223 (270)
T PRK06731 156 DYILIDTAGKN---YRASETVEEMIETMGQVEPDYICLTLSAS---MKSKDMIEIIT----NFKD--IHIDGIVFTKFDE 223 (270)
T ss_pred CEEEEECCCCC---cCCHHHHHHHHHHHhhhCCCeEEEEEcCc---cCHHHHHHHHH----HhCC--CCCCEEEEEeecC
Confidence 89999999983 33445555565555445677788884432 12222 23333 3332 1456788999998
Q ss_pred CC
Q 021699 167 SL 168 (309)
Q Consensus 167 ~~ 168 (309)
..
T Consensus 224 t~ 225 (270)
T PRK06731 224 TA 225 (270)
T ss_pred CC
Confidence 53
No 358
>PRK10867 signal recognition particle protein; Provisional
Probab=98.11 E-value=0.0001 Score=70.35 Aligned_cols=71 Identities=18% Similarity=0.252 Sum_probs=40.5
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021699 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 86 g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
+..+.||||||... .++...+.+......-.++-+++|++ +. ......+..+.+.+.. ...-+|+||.|
T Consensus 183 ~~DvVIIDTaGrl~---~d~~lm~eL~~i~~~v~p~evllVld--a~-~gq~av~~a~~F~~~~-----~i~giIlTKlD 251 (433)
T PRK10867 183 GYDVVIVDTAGRLH---IDEELMDELKAIKAAVNPDEILLVVD--AM-TGQDAVNTAKAFNEAL-----GLTGVILTKLD 251 (433)
T ss_pred CCCEEEEeCCCCcc---cCHHHHHHHHHHHHhhCCCeEEEEEe--cc-cHHHHHHHHHHHHhhC-----CCCEEEEeCcc
Confidence 45799999999843 34444444444333336778888844 31 1122333444444332 24567889999
Q ss_pred CC
Q 021699 166 LS 167 (309)
Q Consensus 166 ~~ 167 (309)
..
T Consensus 252 ~~ 253 (433)
T PRK10867 252 GD 253 (433)
T ss_pred Cc
Confidence 64
No 359
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.07 E-value=0.00014 Score=68.49 Aligned_cols=119 Identities=17% Similarity=0.200 Sum_probs=62.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC----------CcccccCCC--C---------C--CCeeEEEEe----------ee
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE----------KAVTVSTFQ--S---------E--GPRPVMVSR----------SR 84 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~----------~~~~~~~~~--~---------~--t~~~~~~~~----------~~ 84 (309)
.+-.|+++|++|+||||++..|... .+..++... . . ...+..... ..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 3568999999999999999777632 111111100 0 0 000111111 12
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC-CcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEec
Q 021699 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT-IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 163 (309)
Q Consensus 85 ~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~-~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk 163 (309)
.+..+.||||||... .+...+..+.+++.... .+-+++|.+.+. ...+.. .+...|..- ...=+++||
T Consensus 253 ~~~DlVLIDTaGr~~---~~~~~l~el~~~l~~~~~~~e~~LVlsat~---~~~~~~---~~~~~~~~~--~~~~~I~TK 321 (388)
T PRK12723 253 KDFDLVLVDTIGKSP---KDFMKLAEMKELLNACGRDAEFHLAVSSTT---KTSDVK---EIFHQFSPF--SYKTVIFTK 321 (388)
T ss_pred CCCCEEEEcCCCCCc---cCHHHHHHHHHHHHhcCCCCeEEEEEcCCC---CHHHHH---HHHHHhcCC--CCCEEEEEe
Confidence 456799999999853 34334555666554323 334667744332 222222 222333211 356788999
Q ss_pred ccCC
Q 021699 164 AQLS 167 (309)
Q Consensus 164 ~D~~ 167 (309)
.|..
T Consensus 322 lDet 325 (388)
T PRK12723 322 LDET 325 (388)
T ss_pred ccCC
Confidence 9975
No 360
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=0.00015 Score=68.65 Aligned_cols=23 Identities=17% Similarity=0.504 Sum_probs=19.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+..++++|.+|+||||++..|..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999988874
No 361
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=7e-05 Score=73.87 Aligned_cols=112 Identities=12% Similarity=0.056 Sum_probs=73.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEee------------------eCCeEEEEEeCCCCCCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS------------------RAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~------------------~~g~~l~liDTPG~~~~ 100 (309)
..-+.|+|...+|||-|+..|-+.++ ..+...+.|.......+. +.-..+.+|||||...+
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNV-qegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNV-QEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CceEEEeecccccchHHHHHhhcccc-ccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 35589999999999999999998865 334444443332211111 11124789999997322
Q ss_pred CCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021699 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
..++..- ..-+|+.|+|+++- +++.+...+-+..|+..- .|+||.+||+|-
T Consensus 554 --------tnlRsrg-sslC~~aIlvvdIm-hGlepqtiESi~lLR~rk-----tpFivALNKiDR 604 (1064)
T KOG1144|consen 554 --------TNLRSRG-SSLCDLAILVVDIM-HGLEPQTIESINLLRMRK-----TPFIVALNKIDR 604 (1064)
T ss_pred --------hhhhhcc-ccccceEEEEeehh-ccCCcchhHHHHHHHhcC-----CCeEEeehhhhh
Confidence 2233221 14689999997764 357777777777776653 699999999985
No 362
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=7.9e-05 Score=72.72 Aligned_cols=114 Identities=16% Similarity=0.238 Sum_probs=68.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccC-------C---------CCCCCeeEEEEee---eCCe--EEEEEeCCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVST-------F---------QSEGPRPVMVSRS---RAGF--TLNIVDTPG 96 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~-------~---------~~~t~~~~~~~~~---~~g~--~l~liDTPG 96 (309)
.-.+++++|.=++|||+|+..|.+......+. + .+++.+....+.- .+|+ -++++||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 34789999999999999999998764311110 0 0111111111111 1222 478999999
Q ss_pred CCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021699 97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 97 ~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
.-+ +.+ +....+ .-+|++++|+++-. .+.-...++++...+.. .++++|+||.|.
T Consensus 207 HVn--F~D-E~ta~l------~~sDgvVlvvDv~E-GVmlntEr~ikhaiq~~-----~~i~vviNKiDR 261 (971)
T KOG0468|consen 207 HVN--FSD-ETTASL------RLSDGVVLVVDVAE-GVMLNTERIIKHAIQNR-----LPIVVVINKVDR 261 (971)
T ss_pred ccc--chH-HHHHHh------hhcceEEEEEEccc-CceeeHHHHHHHHHhcc-----CcEEEEEehhHH
Confidence 943 333 333334 46799999977633 34434444554443332 799999999986
No 363
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=2.7e-05 Score=62.05 Aligned_cols=124 Identities=15% Similarity=0.207 Sum_probs=75.0
Q ss_pred HHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 021699 27 ELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH 106 (309)
Q Consensus 27 ~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~ 106 (309)
.+++++...+ .+++|+++|-.|+||+|+.-.+--.++..+-+.++.... ...+.+.++.+||.-|...-.-..
T Consensus 7 s~f~~L~g~e-~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve----~v~yKNLk~~vwdLggqtSirPyW-- 79 (182)
T KOG0072|consen 7 SLFKALQGPE-REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVE----TVPYKNLKFQVWDLGGQTSIRPYW-- 79 (182)
T ss_pred HHHHHhcCCc-cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcc----ccccccccceeeEccCcccccHHH--
Confidence 4566666544 569999999999999998766654443333333332222 344577789999999884322111
Q ss_pred HHHHHHHhhhcCCCcEEEEEEeC-CccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021699 107 AIQLIKRFLLNKTIDVLLYVDRL-DVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 107 ~~~~i~~~~~~~~~d~il~v~~~-d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
+.+. .+.|+++||++- |..+++..-.++...+.+.--.. -.++++.||.|.
T Consensus 80 -----RcYy--~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~--a~llv~anKqD~ 131 (182)
T KOG0072|consen 80 -----RCYY--ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQH--AKLLVFANKQDY 131 (182)
T ss_pred -----HHHh--cccceEEEEEeccchhhhhhhHHHHHHHhccHhhcC--ceEEEEeccccc
Confidence 1112 588999999654 33345544455554444321111 356778899996
No 364
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.93 E-value=0.00036 Score=66.65 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=42.3
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecc
Q 021699 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 85 ~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~ 164 (309)
.+..+.|+||||... .++.....+..+...-.+|-+++|++.. ......+..+.+.+.. ...=+|+||.
T Consensus 181 ~~~DvVIIDTaGr~~---~d~~l~~eL~~i~~~~~p~e~lLVvda~---tgq~~~~~a~~f~~~v-----~i~giIlTKl 249 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQ---IDEELMEELAAIKEILNPDEILLVVDAM---TGQDAVNTAKTFNERL-----GLTGVVLTKL 249 (428)
T ss_pred cCCCEEEEeCCCccc---cCHHHHHHHHHHHHhhCCceEEEEEecc---chHHHHHHHHHHHhhC-----CCCEEEEeCc
Confidence 345799999999843 4444445554444334678888884432 1223334444444333 2456779999
Q ss_pred cCC
Q 021699 165 QLS 167 (309)
Q Consensus 165 D~~ 167 (309)
|..
T Consensus 250 D~~ 252 (428)
T TIGR00959 250 DGD 252 (428)
T ss_pred cCc
Confidence 964
No 365
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.90 E-value=0.00028 Score=58.91 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=44.1
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021699 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 86 g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
+..+.|+||||... .+...+..+..+.....++.+++|++.. . .....+.+..+.+..+ ..-+|+||.|
T Consensus 82 ~~d~viiDt~g~~~---~~~~~l~~l~~l~~~~~~~~~~lVv~~~--~-~~~~~~~~~~~~~~~~-----~~~viltk~D 150 (173)
T cd03115 82 NFDVVIVDTAGRLQ---IDENLMEELKKIKRVVKPDEVLLVVDAM--T-GQDAVNQAKAFNEALG-----ITGVILTKLD 150 (173)
T ss_pred CCCEEEEECcccch---hhHHHHHHHHHHHhhcCCCeEEEEEECC--C-ChHHHHHHHHHHhhCC-----CCEEEEECCc
Confidence 55689999999842 2444455555444334589999996653 1 2233344545544433 3667789999
Q ss_pred CCCC
Q 021699 166 LSLP 169 (309)
Q Consensus 166 ~~~~ 169 (309)
....
T Consensus 151 ~~~~ 154 (173)
T cd03115 151 GDAR 154 (173)
T ss_pred CCCC
Confidence 7543
No 366
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=6.1e-05 Score=79.04 Aligned_cols=132 Identities=14% Similarity=0.154 Sum_probs=72.9
Q ss_pred EEEEeCCCCCHHHHHHHHh-CCCcccccCCCCCCCe-eEEEEeeeCCeEEEEEeCCCCCCCCC----CcH----HHHHHH
Q 021699 42 ILVMGKGGVGKSSTVNSII-GEKAVTVSTFQSEGPR-PVMVSRSRAGFTLNIVDTPGLIEGGY----VNY----HAIQLI 111 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~-g~~~~~~~~~~~~t~~-~~~~~~~~~g~~l~liDTPG~~~~~~----~~~----~~~~~i 111 (309)
-+|||++|+||||++..-- .-.........+.... +..|. -+-+..-++|||.|-.-... .+. ..+..+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cd-wwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCD-WWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccC-cccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 5788999999999874322 1111111111111111 12222 12344688999999764332 222 234445
Q ss_pred HHhhhcCCCcEEEEEEeCCcc-ccChhHH-HH-------HHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHh
Q 021699 112 KRFLLNKTIDVLLYVDRLDVY-RVDNLDK-QI-------TRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSK 180 (309)
Q Consensus 112 ~~~~~~~~~d~il~v~~~d~~-~~~~~d~-~~-------l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~ 180 (309)
+++-..+.+|.|++.+++..- ..+..+. .. +++|.+.++-. .|+++++||.|+.+- +++|...
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~--~PVYl~lTk~Dll~G----F~efF~~ 278 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHAR--LPVYLVLTKADLLPG----FEEFFGS 278 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccC--CceEEEEeccccccc----HHHHHhc
Confidence 555556789999999776431 2333333 12 34444454433 699999999999732 4555443
No 367
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.87 E-value=7.7e-05 Score=71.97 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
--++++|.+|+||||++..|.+.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHH
Confidence 46899999999999999888853
No 368
>PRK01889 GTPase RsgA; Reviewed
Probab=97.82 E-value=2.2e-05 Score=73.39 Aligned_cols=59 Identities=27% Similarity=0.435 Sum_probs=37.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCC-------CCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
-+++++|.+|+|||||+|.|+|.....++.... +|....... +.+ ...++||||+....
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~--l~~-~~~l~DtpG~~~~~ 261 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHP--LPS-GGLLIDTPGMRELQ 261 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEE--ecC-CCeecCCCchhhhc
Confidence 479999999999999999999875544433221 222111111 111 23688999996543
No 369
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.82 E-value=7.3e-05 Score=61.72 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=19.1
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021699 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
++++|..|+|||||++.+++.
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 578999999999999999875
No 370
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=0.00014 Score=69.80 Aligned_cols=135 Identities=18% Similarity=0.243 Sum_probs=77.5
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
...|+-++|+|++|+||||||.+|...- ..+.... -+-|++. ..-..+++++..+|. | .+ ..++..
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~--tk~ti~~-i~GPiTv-vsgK~RRiTflEcp~--D---l~-~miDva---- 131 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRF--TKQTIDE-IRGPITV-VSGKTRRITFLECPS--D---LH-QMIDVA---- 131 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHH--HHhhhhc-cCCceEE-eecceeEEEEEeChH--H---HH-HHHhHH----
Confidence 3457889999999999999999998642 1111111 1112221 112345799999982 1 11 112211
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccc
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPS 192 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~ 192 (309)
.=+|+||+.++.. ..+.-...+++..+..+ |- ..++-|+|+.|+... ..++....+.....+-.-+.+.
T Consensus 132 --KIaDLVlLlIdgn-fGfEMETmEFLnil~~H-Gm---PrvlgV~ThlDlfk~-~stLr~~KKrlkhRfWtEiyqG 200 (1077)
T COG5192 132 --KIADLVLLLIDGN-FGFEMETMEFLNILISH-GM---PRVLGVVTHLDLFKN-PSTLRSIKKRLKHRFWTEIYQG 200 (1077)
T ss_pred --HhhheeEEEeccc-cCceehHHHHHHHHhhc-CC---CceEEEEeecccccC-hHHHHHHHHHHhhhHHHHHcCC
Confidence 2469999994432 24666667777766655 32 578889999999733 2244444433334444444443
No 371
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.81 E-value=0.00019 Score=66.21 Aligned_cols=120 Identities=18% Similarity=0.110 Sum_probs=70.1
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccC--------------CCCCCCeeEEEEeee-----------------
Q 021699 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST--------------FQSEGPRPVMVSRSR----------------- 84 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~--------------~~~~t~~~~~~~~~~----------------- 84 (309)
...++.+.+.|..++|||||+-+|...+. .-++ ..+-+.+.....+.+
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~-DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRL-DDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCC-CCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 34578999999999999999988875431 0000 001111111101111
Q ss_pred ------CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEE
Q 021699 85 ------AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL 158 (309)
Q Consensus 85 ------~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~i 158 (309)
.++-+.++||-|.. .+++..-+-+...++|-.++++..|. ..+...++-+..+... ..|++
T Consensus 193 ~~vv~~aDklVsfVDtvGHE-------pwLrTtirGL~gqk~dYglLvVaAdd-G~~~~tkEHLgi~~a~-----~lPvi 259 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHE-------PWLRTTIRGLLGQKVDYGLLVVAADD-GVTKMTKEHLGIALAM-----ELPVI 259 (527)
T ss_pred hHhhhhcccEEEEEecCCcc-------HHHHHHHHHHhccccceEEEEEEccC-CcchhhhHhhhhhhhh-----cCCEE
Confidence 12236789999872 34443333444578999999988765 3444444433322222 16999
Q ss_pred EEEecccCCCC
Q 021699 159 IVLTHAQLSLP 169 (309)
Q Consensus 159 iV~tk~D~~~~ 169 (309)
+|+||+|..+.
T Consensus 260 VvvTK~D~~~d 270 (527)
T COG5258 260 VVVTKIDMVPD 270 (527)
T ss_pred EEEEecccCcH
Confidence 99999999743
No 372
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.00049 Score=62.56 Aligned_cols=151 Identities=13% Similarity=0.127 Sum_probs=91.5
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCC------Cccc---------ccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 021699 36 NVNTLTILVMGKGGVGKSSTVNSIIGE------KAVT---------VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~------~~~~---------~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~ 100 (309)
...++||.-+|....|||||.-+|+.- ..+. .....+.|....+..++-..+.+-=+|+||..|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD- 129 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD- 129 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH-
Confidence 456799999999999999999888731 1111 111123344444455555677888999999833
Q ss_pred CCCcHHHHHHHHHhhhc-CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHH
Q 021699 101 GYVNYHAIQLIKRFLLN-KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCS 179 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~-~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~ 179 (309)
+++..+.. ..-|..++|+...... -++.++-+ .|.+..|- .++++.+||+|+.+.. +.-+.+
T Consensus 130 ---------YIKNMItGaaqMDGaILVVaatDG~-MPQTrEHl-LLArQVGV---~~ivvfiNKvD~V~d~--e~leLV- 192 (449)
T KOG0460|consen 130 ---------YIKNMITGAAQMDGAILVVAATDGP-MPQTREHL-LLARQVGV---KHIVVFINKVDLVDDP--EMLELV- 192 (449)
T ss_pred ---------HHHHhhcCccccCceEEEEEcCCCC-CcchHHHH-HHHHHcCC---ceEEEEEecccccCCH--HHHHHH-
Confidence 34444421 3568888887765423 34455444 34455565 5899999999997332 123333
Q ss_pred hhhHHHHHhhcccccccccccccCCCcEEEecc
Q 021699 180 KRSEALLKFVSPSTWMKKKDIQGSFVPVVLVEN 212 (309)
Q Consensus 180 ~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~ 212 (309)
.-++++++... +| .-+.+|++.=|+
T Consensus 193 --EmE~RElLse~-gf-----~Gd~~PvI~GSA 217 (449)
T KOG0460|consen 193 --EMEIRELLSEF-GF-----DGDNTPVIRGSA 217 (449)
T ss_pred --HHHHHHHHHHc-CC-----CCCCCCeeecch
Confidence 34566666432 22 234589886554
No 373
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.75 E-value=3e-05 Score=67.82 Aligned_cols=101 Identities=22% Similarity=0.321 Sum_probs=71.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH----HHHHHHHHhh
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY----HAIQLIKRFL 115 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~----~~~~~i~~~~ 115 (309)
-++.++|-+.+||||+++.|+|... .+..+..+|-..+.....++|-++.+.|.||+.++..... +.+..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s-~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviav----- 133 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFS-EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAV----- 133 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCC-ccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEE-----
Confidence 3888999999999999999999753 5555666665555566668899999999999987543322 22221
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhC
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG 150 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g 150 (309)
.+.++++++|.++- .. -..+++++.-.+.||
T Consensus 134 -artcnli~~vld~~--kp-~~hk~~ie~eleg~g 164 (358)
T KOG1487|consen 134 -ARTCNLIFIVLDVL--KP-LSHKKIIEKELEGFG 164 (358)
T ss_pred -eecccEEEEEeecc--Cc-ccHHHHHHHhhhcce
Confidence 25789999994432 21 235667776667776
No 374
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.00027 Score=66.78 Aligned_cols=77 Identities=19% Similarity=0.271 Sum_probs=47.7
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcE--EEEEe
Q 021699 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRA--LIVLT 162 (309)
Q Consensus 85 ~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~--iiV~t 162 (309)
.|..+.+|||+|-. ..++..+..+.+++...++|.|++| -.+ -+......-+..+.+.++.....+. -+++|
T Consensus 465 ~gfDVvLiDTAGR~---~~~~~lm~~l~k~~~~~~pd~i~~v--gea-lvg~dsv~q~~~fn~al~~~~~~r~id~~~lt 538 (587)
T KOG0781|consen 465 QGFDVVLIDTAGRM---HNNAPLMTSLAKLIKVNKPDLILFV--GEA-LVGNDSVDQLKKFNRALADHSTPRLIDGILLT 538 (587)
T ss_pred cCCCEEEEeccccc---cCChhHHHHHHHHHhcCCCceEEEe--hhh-hhCcHHHHHHHHHHHHHhcCCCccccceEEEE
Confidence 46779999999983 3344566677788888899999999 332 1212222334444444443221222 47899
Q ss_pred cccCC
Q 021699 163 HAQLS 167 (309)
Q Consensus 163 k~D~~ 167 (309)
|+|..
T Consensus 539 k~dtv 543 (587)
T KOG0781|consen 539 KFDTV 543 (587)
T ss_pred eccch
Confidence 99975
No 375
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.72 E-value=0.00015 Score=68.09 Aligned_cols=138 Identities=23% Similarity=0.283 Sum_probs=76.4
Q ss_pred ChhhHHHHHHHHHH-hhhcC---CCceEEEEEeCCCCCHHHHHHHHh------CCCcccccCC-----------------
Q 021699 18 PPATQTKLLELLGK-LKQEN---VNTLTILVMGKGGVGKSSTVNSII------GEKAVTVSTF----------------- 70 (309)
Q Consensus 18 ~~~~~~~l~~~~~~-~~~~~---~~~l~I~vvG~~g~GKSSliN~l~------g~~~~~~~~~----------------- 70 (309)
-..+.++|.+++.. -.+.. ..|..|+++|-.|+||||+.-.|. |..+..++..
T Consensus 75 iKiV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~ 154 (451)
T COG0541 75 IKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQV 154 (451)
T ss_pred HHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHc
Confidence 34566777777774 11111 237889999999999999875554 2222112110
Q ss_pred -----CC-CCCeeEEE------EeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhH
Q 021699 71 -----QS-EGPRPVMV------SRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD 138 (309)
Q Consensus 71 -----~~-~t~~~~~~------~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d 138 (309)
+. ...+|... .....+..+.||||+|- -..+++..+.++.....-+||-+|+|++.. .-..-
T Consensus 155 ~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGR---l~ide~Lm~El~~Ik~~~~P~E~llVvDam---~GQdA 228 (451)
T COG0541 155 GVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGR---LHIDEELMDELKEIKEVINPDETLLVVDAM---IGQDA 228 (451)
T ss_pred CCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCc---ccccHHHHHHHHHHHhhcCCCeEEEEEecc---cchHH
Confidence 00 01111100 00123457999999998 445666666666555556899999994432 11223
Q ss_pred HHHHHHHHHHhCccccCcEEEEEecccC
Q 021699 139 KQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 139 ~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
....+.+.+..+ -+=+|+||.|.
T Consensus 229 ~~~A~aF~e~l~-----itGvIlTKlDG 251 (451)
T COG0541 229 VNTAKAFNEALG-----ITGVILTKLDG 251 (451)
T ss_pred HHHHHHHhhhcC-----CceEEEEcccC
Confidence 344455554432 34466677764
No 376
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.00014 Score=65.13 Aligned_cols=174 Identities=18% Similarity=0.193 Sum_probs=96.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccccc---------------------CCCCC------------CCeeEEEEee-
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVS---------------------TFQSE------------GPRPVMVSRS- 83 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~---------------------~~~~~------------t~~~~~~~~~- 83 (309)
..++|.-+|....||||++.++.|-....-. +.+.| +.+...+...
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 4699999999999999999999884210000 00001 0000011100
Q ss_pred eCC-----eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc-CCCcEEEEEEeCCccccChhHHHHHHH--HHHHhCccccC
Q 021699 84 RAG-----FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN-KTIDVLLYVDRLDVYRVDNLDKQITRA--ITDNFGEQIWK 155 (309)
Q Consensus 84 ~~g-----~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~-~~~d~il~v~~~d~~~~~~~d~~~l~~--l~~~~g~~~~~ 155 (309)
..| +.+.++|+||. .++. ...+.. .--|+.|+.+....+...++..+-+-. +.+. +
T Consensus 117 ~~~~~klvRHVSfVDCPGH--------DiLM--aTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L------k 180 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGH--------DILM--ATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL------K 180 (466)
T ss_pred CCCceEEEEEEEeccCCch--------HHHH--HHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh------c
Confidence 011 25789999998 1111 111100 123666777555544333333332222 2233 7
Q ss_pred cEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHH
Q 021699 156 RALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPN 235 (309)
Q Consensus 156 ~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~ 235 (309)
+++++-||.|+..+.. ..+ ..+.+..++... .+.+.|++++++.-.+ .++.
T Consensus 181 hiiilQNKiDli~e~~-A~e-----q~e~I~kFi~~t--------~ae~aPiiPisAQlky---------------NId~ 231 (466)
T KOG0466|consen 181 HIIILQNKIDLIKESQ-ALE-----QHEQIQKFIQGT--------VAEGAPIIPISAQLKY---------------NIDV 231 (466)
T ss_pred eEEEEechhhhhhHHH-HHH-----HHHHHHHHHhcc--------ccCCCceeeehhhhcc---------------ChHH
Confidence 9999999999973321 122 236777777654 2345799999875222 1677
Q ss_pred HHHHHHHHHhcCCCcceeccc
Q 021699 236 LVKTITEVVLNGSKALLVDKK 256 (309)
Q Consensus 236 L~~~i~~~~~~~~~~~~~~~~ 256 (309)
+.+.|..-++--.+.+....+
T Consensus 232 v~eyivkkIPvPvRdf~s~pr 252 (466)
T KOG0466|consen 232 VCEYIVKKIPVPVRDFTSPPR 252 (466)
T ss_pred HHHHHHhcCCCCccccCCCCc
Confidence 888888777766666544443
No 377
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.62 E-value=5.9e-05 Score=75.47 Aligned_cols=139 Identities=19% Similarity=0.188 Sum_probs=76.7
Q ss_pred HHHHHHHHhh-hcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEE-----------------------
Q 021699 24 KLLELLGKLK-QENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVM----------------------- 79 (309)
Q Consensus 24 ~l~~~~~~~~-~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~----------------------- 79 (309)
.+.+.+..+. +....-..|+|+|..++||||.++++.|.+..+-+. .-.|+.|..
T Consensus 13 ~lqd~~~~l~~~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~-givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~ 91 (657)
T KOG0446|consen 13 PLQDKLEILGSSSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGV-GIVTRRPLILQLSIVAGGDEEEASFLTHDKKK 91 (657)
T ss_pred HHHHHHHHhcCCCcccCCceEEecCCCCcchhHHHHhhccccccccc-cceecccceeecccccCCcccchhcccccccc
Confidence 3444455554 322345789999999999999999999975422221 111111111
Q ss_pred --------------------------------EEeee-CCeEEEEEeCCCCCCC------CCCcHHHHHHHHHhhhcCCC
Q 021699 80 --------------------------------VSRSR-AGFTLNIVDTPGLIEG------GYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 80 --------------------------------~~~~~-~g~~l~liDTPG~~~~------~~~~~~~~~~i~~~~~~~~~ 120 (309)
..... +-.++++||+||+-.. .....++...+..++ ...
T Consensus 92 ~~~D~~~vrkeI~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi--~~~ 169 (657)
T KOG0446|consen 92 RFTDFEEVRKEIRSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYI--EKP 169 (657)
T ss_pred ccCCHHHHHHHHHhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhc--ccc
Confidence 00000 1124789999999752 223334555555555 577
Q ss_pred cEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 121 d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
+++++.+.... .+-.....++...+.-..+ ..++-|+||+|+.+.
T Consensus 170 ~~iILav~~an--~d~ats~alkiarevDp~g--~RTigvitK~Dlmdk 214 (657)
T KOG0446|consen 170 NRIILAVTPAN--SDIATSPALVVAREVDPGG--SRTLEVITKFDFMDK 214 (657)
T ss_pred chhhhhccchh--hhhhcCHHHHHHHhhCCCc--cchhHHhhhHHhhhc
Confidence 88777743322 1111122333333332222 689999999998644
No 378
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=97.61 E-value=0.00056 Score=55.33 Aligned_cols=117 Identities=18% Similarity=0.094 Sum_probs=69.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
-.++|.++|.+..|||||+-...|.... .......+..+...+....|. .+.|||.-|..+.... + -+
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~d-e~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~-------l--Pi 88 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYD-EEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINM-------L--PI 88 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhH-HHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhcc-------C--ce
Confidence 4699999999999999999888887531 222222233333334444544 5689999998432111 1 11
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
...++-++||+++++...- --.+.++.++..|-+-.---|+|+||-|..
T Consensus 89 ac~dsvaIlFmFDLt~r~T---LnSi~~WY~QAr~~NktAiPilvGTKyD~f 137 (205)
T KOG1673|consen 89 ACKDSVAILFMFDLTRRST---LNSIKEWYRQARGLNKTAIPILVGTKYDLF 137 (205)
T ss_pred eecCcEEEEEEEecCchHH---HHHHHHHHHHHhccCCccceEEeccchHhh
Confidence 2257788899988764221 222344444444422112347789999863
No 379
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.59 E-value=0.0015 Score=58.96 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.-+-|.|+|.+|+|||||++.+++.
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4588999999999999999888764
No 380
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00023 Score=70.56 Aligned_cols=112 Identities=15% Similarity=0.187 Sum_probs=68.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCC---------------CCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE---------------GPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 103 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~---------------t~~~~~~~~~~~g~~l~liDTPG~~~~~~~ 103 (309)
--+|.++.....|||||+.+|+..+....+..++. |-..........+..+++||+||.-|+...
T Consensus 9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~se 88 (887)
T KOG0467|consen 9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSE 88 (887)
T ss_pred eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhh
Confidence 35788999999999999999998765333332221 212222233346778999999999776432
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021699 104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 104 ~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
-. ... .=+|..++.+++-. ++..+....++..-.. . ...++|+||+|
T Consensus 89 vs---sas------~l~d~alvlvdvve-gv~~qt~~vlrq~~~~---~--~~~~lvinkid 135 (887)
T KOG0467|consen 89 VS---SAS------RLSDGALVLVDVVE-GVCSQTYAVLRQAWIE---G--LKPILVINKID 135 (887)
T ss_pred hh---hhh------hhcCCcEEEEeecc-ccchhHHHHHHHHHHc---c--CceEEEEehhh
Confidence 21 111 23455555544432 4555555555532211 1 57999999999
No 381
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.56 E-value=0.00061 Score=55.60 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=18.0
Q ss_pred EEEEeCCCCCHHHHHHHHhC
Q 021699 42 ILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g 61 (309)
|.++|++|+||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999988874
No 382
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.45 E-value=0.00066 Score=62.43 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+.+++|+|...+|||||+--|+..
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHg 156 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHG 156 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeec
Confidence 679999999999999998777643
No 383
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.42 E-value=0.0022 Score=60.28 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=28.5
Q ss_pred HHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhC
Q 021699 28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 28 ~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+.+.+.++....+-|.|||+..+||||||.++..
T Consensus 6 iykDIa~RT~GdIYiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 6 IYKDIAERTGGDIYIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred HHHHHHHhcCCceEEEeecCcccCchhHHHHHHH
Confidence 4555666666789999999999999999999884
No 384
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.40 E-value=0.00083 Score=61.21 Aligned_cols=123 Identities=20% Similarity=0.284 Sum_probs=64.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCC------CcccccC----------------------CC-CCCCeeEEEEe-----
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGE------KAVTVST----------------------FQ-SEGPRPVMVSR----- 82 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~------~~~~~~~----------------------~~-~~t~~~~~~~~----- 82 (309)
..+.-|+++|-.|+||||.|-.|... ++..... .. ..+.+|....+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 34899999999999999998766621 1100000 00 01111111000
Q ss_pred -eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh---cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEE
Q 021699 83 -SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL---NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL 158 (309)
Q Consensus 83 -~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~---~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~i 158 (309)
.-.|..+.|+||+|-......--.-++.+.+.+. ...+|-++++.+... -..-..-.+.+.+..+ -.=
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt---Gqnal~QAk~F~eav~-----l~G 288 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT---GQNALSQAKIFNEAVG-----LDG 288 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEccc---ChhHHHHHHHHHHhcC-----Cce
Confidence 1246679999999985433222222333433331 134677888844321 1222333444444432 356
Q ss_pred EEEecccCC
Q 021699 159 IVLTHAQLS 167 (309)
Q Consensus 159 iV~tk~D~~ 167 (309)
+++||.|..
T Consensus 289 iIlTKlDgt 297 (340)
T COG0552 289 IILTKLDGT 297 (340)
T ss_pred EEEEecccC
Confidence 889999964
No 385
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.00013 Score=67.66 Aligned_cols=113 Identities=16% Similarity=0.155 Sum_probs=70.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCccc-----ccC------------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVT-----VST------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 102 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~-----~~~------------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~ 102 (309)
-+|.|+....+||||+..+|+=-..+. +.+ ..+.|.......+.|.|.++.+|||||.-|+..
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 378999999999999988776221111 111 123344455567788999999999999987765
Q ss_pred CcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.-+..+. -.|.++.|++..+ .+..+....-+.- ..+..|.+..+||+|..
T Consensus 118 everclr---------vldgavav~dasa-gve~qtltvwrqa-----dk~~ip~~~finkmdk~ 167 (753)
T KOG0464|consen 118 EVERCLR---------VLDGAVAVFDASA-GVEAQTLTVWRQA-----DKFKIPAHCFINKMDKL 167 (753)
T ss_pred EHHHHHH---------HhcCeEEEEeccC-Ccccceeeeehhc-----cccCCchhhhhhhhhhh
Confidence 5444443 3477788855543 3433332222111 12236788889999974
No 386
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.00065 Score=62.45 Aligned_cols=120 Identities=13% Similarity=0.062 Sum_probs=69.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcc------cccC------CC-CCCCeeEEE-Eeee-------------------
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAV------TVST------FQ-SEGPRPVMV-SRSR------------------- 84 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~------~~~~------~~-~~t~~~~~~-~~~~------------------- 84 (309)
-++|++|+|.-.+|||||+--|+....- ...- .. +.|. ++.. .+.+
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTS-sis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTS-SISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCccc-ccchhcccccccccccchhhcccHHHHH
Confidence 4689999999999999999888754320 0000 00 1111 1100 0000
Q ss_pred --CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEe
Q 021699 85 --AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 162 (309)
Q Consensus 85 --~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~t 162 (309)
..+-++++|.+|....... .-.-+..-.+|+.++|++.+. .++....+-+..+...- .|+.+++|
T Consensus 245 e~SSKlvTfiDLAGh~kY~~T-------Ti~gLtgY~Ph~A~LvVsA~~-Gi~~tTrEHLgl~~AL~-----iPfFvlvt 311 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKT-------TIHGLTGYTPHFACLVVSADR-GITWTTREHLGLIAALN-----IPFFVLVT 311 (591)
T ss_pred hhhcceEEEeecccchhhhee-------eeeecccCCCceEEEEEEcCC-CCccccHHHHHHHHHhC-----CCeEEEEE
Confidence 1123789999987332111 111122246788888877764 45555555555554432 79999999
Q ss_pred cccCCCCCC
Q 021699 163 HAQLSLPDR 171 (309)
Q Consensus 163 k~D~~~~~~ 171 (309)
|+|+..+..
T Consensus 312 K~Dl~~~~~ 320 (591)
T KOG1143|consen 312 KMDLVDRQG 320 (591)
T ss_pred eeccccchh
Confidence 999986543
No 387
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.0029 Score=58.58 Aligned_cols=88 Identities=23% Similarity=0.300 Sum_probs=53.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC------CCccccc-------CC------CCCCCeeEEEEee---------------
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIG------EKAVTVS-------TF------QSEGPRPVMVSRS--------------- 83 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g------~~~~~~~-------~~------~~~t~~~~~~~~~--------------- 83 (309)
.+--|+++|-.|+||||.+-.|.- .....+. .+ ..-+.-|....+.
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 355699999999999999876662 1111111 00 0001122222211
Q ss_pred -eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEe
Q 021699 84 -RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDR 128 (309)
Q Consensus 84 -~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~ 128 (309)
.++..+.|+||.|-. ..+...++.+++....-++|-+|+|.+
T Consensus 180 Kke~fdvIIvDTSGRh---~qe~sLfeEM~~v~~ai~Pd~vi~VmD 222 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRH---KQEASLFEEMKQVSKAIKPDEIIFVMD 222 (483)
T ss_pred HhcCCcEEEEeCCCch---hhhHHHHHHHHHHHhhcCCCeEEEEEe
Confidence 246689999999983 344455666666655568999999943
No 388
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=97.28 E-value=0.0029 Score=56.58 Aligned_cols=69 Identities=20% Similarity=0.226 Sum_probs=44.0
Q ss_pred hhhcCCCceEEEEEeCCCCCHHHHHHHHhCCC-cccccCC-CCCCCeeEEEEe---eeCCeEEEEEeCCCCCCC
Q 021699 32 LKQENVNTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTF-QSEGPRPVMVSR---SRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 32 ~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~-~~~~~~~-~~~t~~~~~~~~---~~~g~~l~liDTPG~~~~ 100 (309)
+...+..-.-|.|+|...+|||.|+|.|++.. .+.+++. .++|.-.-.... ...+..+.++||.|+++.
T Consensus 14 l~~~~~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~ 87 (260)
T PF02263_consen 14 LQQIDQPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDV 87 (260)
T ss_dssp HCTTTSBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTT
T ss_pred HhcCCCCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhcccc
Confidence 33333333567899999999999999999853 3444443 234443222211 124568999999999883
No 389
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.24 E-value=0.0047 Score=59.93 Aligned_cols=116 Identities=17% Similarity=0.183 Sum_probs=65.3
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 021699 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKR 113 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~ 113 (309)
+++-++..|+|+.++|||.++++++|+.... +...........-.....| ..+.+-|.+-. +.+...++
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~k------- 492 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSK------- 492 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCc-------
Confidence 3456999999999999999999999986543 2222222221111222222 24555555433 22222211
Q ss_pred hhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 114 ~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
...+|++.++++.... .-...+..+.+.+-.....|+++|.+|+|+-
T Consensus 493 ---e~~cDv~~~~YDsS~p----~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlD 539 (625)
T KOG1707|consen 493 ---EAACDVACLVYDSSNP----RSFEYLAEVYNKYFDLYKIPCLMVATKADLD 539 (625)
T ss_pred ---cceeeeEEEecccCCc----hHHHHHHHHHHHhhhccCCceEEEeeccccc
Confidence 1367999999665421 2222333333322222337999999999973
No 390
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=97.22 E-value=0.005 Score=56.46 Aligned_cols=84 Identities=12% Similarity=0.171 Sum_probs=46.7
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 90 NIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 90 ~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
-||||+|+.++... ...+. .+..-++|+++++ +. + ++...+.+.++...|. -++-+-|.+.+-.
T Consensus 215 ~iInT~g~i~~egy-~~llh----ai~~f~v~vviVL---g~------E-rLy~~lkk~~~~~~~v-~vv~lpKsgGv~~ 278 (415)
T KOG2749|consen 215 CIINTCGWIEGEGY-AALLH----AIKAFEVDVVIVL---GQ------E-RLYSSLKKDLPPKKNV-RVVKLPKSGGVVA 278 (415)
T ss_pred eEEeccceeccccH-HHHHH----HHHHcCccEEEEe---cc------H-HHHHHHHhhccccccc-eEEEecCCCCeEe
Confidence 48999999763222 12222 3333578888777 42 2 6777888887744333 3455677776533
Q ss_pred CCCCHHHHHHhhhHHHHHhhcc
Q 021699 170 DRLDYEVFCSKRSEALLKFVSP 191 (309)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~i~~ 191 (309)
....+.+- .+...+++.+..
T Consensus 279 Rs~~~r~~--~r~~~I~eYFYG 298 (415)
T KOG2749|consen 279 RSKEVRRK--LRGRSIREYFYG 298 (415)
T ss_pred ehHHHHHH--HhhhhHHHhccc
Confidence 32222221 234667777654
No 391
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.19 E-value=0.0062 Score=49.92 Aligned_cols=114 Identities=25% Similarity=0.373 Sum_probs=59.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC---CcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCC-CCC---------C---
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE---KAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTP-GLI---------E--- 99 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~---~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTP-G~~---------~--- 99 (309)
..++|.|.|++|+||||++..+... +.+.++-+ .+.....+|. -+.|+|+. |-. .
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf-------~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rv 76 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGF-------ITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRV 76 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeE-------EeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCccc
Confidence 4699999999999999998777642 21222211 1112223343 35666666 211 0
Q ss_pred CC-CCcHHH-----HHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021699 100 GG-YVNYHA-----IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 100 ~~-~~~~~~-----~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
+. ..+-+. ...+++.+ ..+|++++= -+. ...-....+.+.+.+.+..+ +|++.++-+-+
T Consensus 77 GkY~V~v~~le~i~~~al~rA~--~~aDvIIID-EIG--pMElks~~f~~~ve~vl~~~--kpliatlHrrs 141 (179)
T COG1618 77 GKYGVNVEGLEEIAIPALRRAL--EEADVIIID-EIG--PMELKSKKFREAVEEVLKSG--KPLIATLHRRS 141 (179)
T ss_pred ceEEeeHHHHHHHhHHHHHHHh--hcCCEEEEe-ccc--chhhccHHHHHHHHHHhcCC--CcEEEEEeccc
Confidence 00 111122 22333333 346755432 222 23333456777777777654 68777777543
No 392
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.19 E-value=0.0044 Score=49.88 Aligned_cols=99 Identities=15% Similarity=0.214 Sum_probs=54.6
Q ss_pred EEeCCCCCHHHHHHHHhCC------CcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 44 VMGKGGVGKSSTVNSIIGE------KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 44 vvG~~g~GKSSliN~l~g~------~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
.-|+.|+|||++.-.+... ....+...+..+.- ...+.|+|||+..+ ......+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~---------~yd~VIiD~p~~~~-----~~~~~~l------ 64 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL---------DYDYIIIDTGAGIS-----DNVLDFF------ 64 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC---------CCCEEEEECCCCCC-----HHHHHHH------
Confidence 4578999999986555422 11111111111100 15789999998532 2222333
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
..+|.++++...+...+. .-..+++.+.+..+. .++.+|+|+++.
T Consensus 65 ~~aD~vviv~~~~~~s~~-~~~~~l~~l~~~~~~---~~~~lVvN~~~~ 109 (139)
T cd02038 65 LAADEVIVVTTPEPTSIT-DAYALIKKLAKQLRV---LNFRVVVNRAES 109 (139)
T ss_pred HhCCeEEEEcCCChhHHH-HHHHHHHHHHHhcCC---CCEEEEEeCCCC
Confidence 477999999555532221 123455566554322 578899999863
No 393
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.18 E-value=0.0059 Score=56.49 Aligned_cols=80 Identities=14% Similarity=0.178 Sum_probs=47.3
Q ss_pred EEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc-cChhH------HHHHHHHHHHhCc
Q 021699 79 MVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-VDNLD------KQITRAITDNFGE 151 (309)
Q Consensus 79 ~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~-~~~~d------~~~l~~l~~~~g~ 151 (309)
.+.+.+.+.++.++|.+|... ...+... +-.++++||||+++.... ....| .+-++.+...+..
T Consensus 187 e~~F~~k~~~f~~~DvGGQRs---eRrKWih------cFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~ 257 (354)
T KOG0082|consen 187 EVEFTIKGLKFRMFDVGGQRS---ERKKWIH------CFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNN 257 (354)
T ss_pred EEEEEeCCCceEEEeCCCcHH---HhhhHHH------hhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcC
Confidence 355567788899999999732 1112221 226999999998876542 22222 2223333333332
Q ss_pred c--ccCcEEEEEecccCC
Q 021699 152 Q--IWKRALIVLTHAQLS 167 (309)
Q Consensus 152 ~--~~~~~iiV~tk~D~~ 167 (309)
. ...++|+.+||.|+.
T Consensus 258 ~~F~~tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 258 KWFANTSIILFLNKKDLF 275 (354)
T ss_pred cccccCcEEEEeecHHHH
Confidence 1 124789999999985
No 394
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.15 E-value=0.00026 Score=59.31 Aligned_cols=53 Identities=23% Similarity=0.363 Sum_probs=35.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDT 94 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDT 94 (309)
..=++|.|++|+||||+++.|+.... ..-....||+.+. ..+.+|+.+.+++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~~-l~~SVS~TTR~pR--~gEv~G~dY~Fvs~ 56 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDDK-LRFSVSATTRKPR--PGEVDGVDYFFVTE 56 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhcC-eEEEEEeccCCCC--CCCcCCceeEeCCH
Confidence 35688999999999999999998762 2223344555443 23556776666543
No 395
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.13 E-value=0.003 Score=48.86 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
++|+++|.+|+|||+++.++...
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~ 23 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQF 23 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcC
Confidence 58999999999999999998544
No 396
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.12 E-value=0.0024 Score=50.06 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.2
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021699 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999854
No 397
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.09 E-value=0.011 Score=49.77 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++++|++|+|||||++.|.|-.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 478999999999999999999964
No 398
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.09 E-value=0.005 Score=54.08 Aligned_cols=97 Identities=21% Similarity=0.311 Sum_probs=54.9
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
+...-++++.|..|+||||++.+++.+-. . .| +.+|..+.-. . ..+..+-..+
T Consensus 49 G~pannvLL~G~rGtGKSSlVkall~~y~-~------------------~G--LRlIev~k~~---L---~~l~~l~~~l 101 (249)
T PF05673_consen 49 GLPANNVLLWGARGTGKSSLVKALLNEYA-D------------------QG--LRLIEVSKED---L---GDLPELLDLL 101 (249)
T ss_pred CCCCcceEEecCCCCCHHHHHHHHHHHHh-h------------------cC--ceEEEECHHH---h---ccHHHHHHHH
Confidence 45668999999999999999999996421 0 11 3344433210 0 1111222333
Q ss_pred hcCCCcEEEEEEeCCccccChh--HHHHHHHHHHHhCccccCcEEEEEe
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNL--DKQITRAITDNFGEQIWKRALIVLT 162 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~--d~~~l~~l~~~~g~~~~~~~iiV~t 162 (309)
.......||||+++ +|.+. +...++.+.+.--.....++++..|
T Consensus 102 ~~~~~kFIlf~DDL---sFe~~d~~yk~LKs~LeGgle~~P~NvliyAT 147 (249)
T PF05673_consen 102 RDRPYKFILFCDDL---SFEEGDTEYKALKSVLEGGLEARPDNVLIYAT 147 (249)
T ss_pred hcCCCCEEEEecCC---CCCCCcHHHHHHHHHhcCccccCCCcEEEEEe
Confidence 33456777777544 34433 3555666655422333357777776
No 399
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.04 E-value=0.0006 Score=58.11 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
.-++|+|+.|+||||+.+++..
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHH
Confidence 4578999999999999999974
No 400
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.01 E-value=0.0062 Score=51.48 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
++|.|.|++|+|||||+-.++.
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~ 35 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLR 35 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHH
Confidence 8999999999999999977764
No 401
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.00 E-value=0.0033 Score=58.28 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=27.3
Q ss_pred HHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 25 l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+.+++..+.. ...+|+|.|.+|+|||||+|+|+..
T Consensus 149 ~~~~L~~~v~---~~~nili~G~tgSGKTTll~aL~~~ 183 (332)
T PRK13900 149 IKEFLEHAVI---SKKNIIISGGTSTGKTTFTNAALRE 183 (332)
T ss_pred HHHHHHHHHH---cCCcEEEECCCCCCHHHHHHHHHhh
Confidence 4445544444 4588999999999999999999964
No 402
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.96 E-value=0.00095 Score=53.70 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=33.6
Q ss_pred EEEEeCCCCCHHHHHHHHhCCCcc-cccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 021699 42 ILVMGKGGVGKSSTVNSIIGEKAV-TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~~~-~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~ 97 (309)
|+|+|++|+||||+++.|...-.. .....+.+|+.+.. .+.+|.++.++|...+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~--~e~~g~~~~~v~~~~~ 56 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRP--GEVDGVDYHFVSKEEF 56 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCC--CccCCceeEEeCHHHH
Confidence 689999999999999999976211 11222334444322 2346667777764443
No 403
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.95 E-value=0.0012 Score=56.11 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=34.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEe
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVD 93 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liD 93 (309)
+.=|+|+|++|+||||+++.|+..........+.+|+.+. ..+.+|....+++
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r--~gE~~G~dY~fvs 56 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPR--PGDEEGKTYFFLT 56 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCC--CCCCCCceeEeCC
Confidence 4668999999999999999999764222233344555432 2334555555543
No 404
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.93 E-value=0.013 Score=47.40 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++|+|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 357899999999999999999974
No 405
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.93 E-value=0.0011 Score=57.48 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=17.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHh
Q 021699 40 LTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~ 60 (309)
+=-+|+|+||+||||..|.+.
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~ 23 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMS 23 (290)
T ss_pred cceEEEcCCCCCccchhhhHH
Confidence 345899999999999987654
No 406
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.0049 Score=53.72 Aligned_cols=123 Identities=12% Similarity=0.092 Sum_probs=63.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
-+|+++|.-.+||||+-.-.+..-.....-+-..|..+..-.+.-.-.++.+||.||..+.-...-.....+ ++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF------~~ 101 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIF------RG 101 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHH------hc
Confidence 569999999999999988777542100000111122211111111123688999999876422222222223 47
Q ss_pred CcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 120 ~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
+-+++||++.-. ..-+.-.++...+.+...-+...++=+.+.|+|....
T Consensus 102 ~gALifvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 102 VGALIFVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred cCeEEEEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 889999954321 1111112222223333322333456678899997633
No 407
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.90 E-value=0.005 Score=51.74 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=36.2
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021699 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 86 g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
+....||.|.|..+....- .....+. ..-..+.++.|++. .++.. ....-..+.+... .-=++|+||+|
T Consensus 84 ~~d~IiIE~sG~a~p~~l~-~~~~~~~---~~~~~~~iI~vVDa--~~~~~-~~~~~~~~~~Qi~----~ADvIvlnK~D 152 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLI-LQDPPLK---EDFRLDSIITVVDA--TNFDE-LENIPELLREQIA----FADVIVLNKID 152 (178)
T ss_dssp C-SEEEEEEECSSGGGGHH-HHSHHHH---HHESESEEEEEEEG--TTHGG-HTTHCHHHHHHHC----T-SEEEEE-GG
T ss_pred CcCEEEECCccccccchhh-hcccccc---ccccccceeEEecc--ccccc-cccchhhhhhcch----hcCEEEEeccc
Confidence 3568899999986654440 0011111 12367888888544 33321 1122222233322 34589999999
Q ss_pred CC
Q 021699 166 LS 167 (309)
Q Consensus 166 ~~ 167 (309)
+.
T Consensus 153 ~~ 154 (178)
T PF02492_consen 153 LV 154 (178)
T ss_dssp GH
T ss_pred cC
Confidence 86
No 408
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.89 E-value=0.00058 Score=57.20 Aligned_cols=23 Identities=39% Similarity=0.710 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.|+|+|++|+||||+++.|.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 48999999999999999999864
No 409
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0043 Score=60.37 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCc
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKA 64 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~ 64 (309)
+++++|++|+|||||+|.|.|--.
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~~~ 372 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGFLA 372 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCC
Confidence 689999999999999999999753
No 410
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.84 E-value=0.0031 Score=42.38 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=29.9
Q ss_pred CCCcEEEEEEeCCccc-cC-hhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021699 118 KTIDVLLYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~-~~-~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
.=.++|+|+++++... .+ +....+++.++..|+. +|+++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~---~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPN---KPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTT---S-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCC---CCEEEEEeccC
Confidence 3468999998886653 43 3456788999999965 79999999998
No 411
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.83 E-value=0.016 Score=42.44 Aligned_cols=68 Identities=25% Similarity=0.392 Sum_probs=40.6
Q ss_pred EEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCc
Q 021699 42 ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 121 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d 121 (309)
+++.|..|+||||+...+...=. . ...+... .+ .+.++|+||..+..... ..... ..+|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~-~------~g~~v~~----~~--d~iivD~~~~~~~~~~~--~~~~~------~~~~ 60 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALA-K------RGKRVLL----ID--DYVLIDTPPGLGLLVLL--CLLAL------LAAD 60 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-H------CCCeEEE----EC--CEEEEeCCCCccchhhh--hhhhh------hhCC
Confidence 67889999999999988875311 0 0111111 11 78999999985432210 01111 4778
Q ss_pred EEEEEEeCC
Q 021699 122 VLLYVDRLD 130 (309)
Q Consensus 122 ~il~v~~~d 130 (309)
.++++...+
T Consensus 61 ~vi~v~~~~ 69 (99)
T cd01983 61 LVIIVTTPE 69 (99)
T ss_pred EEEEecCCc
Confidence 888885544
No 412
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.81 E-value=0.0076 Score=56.06 Aligned_cols=35 Identities=29% Similarity=0.439 Sum_probs=27.7
Q ss_pred HHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 25 l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+.+++..... ...+|+|.|.+|+|||||+|+|++.
T Consensus 151 ~~~~l~~~v~---~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 151 LEAFLHACVV---GRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred HHHHHHHHHH---cCCeEEEECCCCccHHHHHHHHHcc
Confidence 3444554444 4689999999999999999999976
No 413
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=96.80 E-value=0.00087 Score=63.92 Aligned_cols=88 Identities=22% Similarity=0.318 Sum_probs=50.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEE----EeeeCC--eEEEEE-----eCCCCCCCCCCcHHHH
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV----SRSRAG--FTLNIV-----DTPGLIEGGYVNYHAI 108 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~----~~~~~g--~~l~li-----DTPG~~~~~~~~~~~~ 108 (309)
=+++++|.+|+|||||+|.|.+.....+..+...+.+.... .....+ .+-.+| |+||........ .
T Consensus 158 q~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~~~~---a 234 (434)
T PRK08472 158 QKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYGAFC---A 234 (434)
T ss_pred CEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHHHHH---H
Confidence 47899999999999999999975422222111111111110 001122 145667 888874432221 2
Q ss_pred HHHHHhhhcCCCcEEEEEEeCC
Q 021699 109 QLIKRFLLNKTIDVLLYVDRLD 130 (309)
Q Consensus 109 ~~i~~~~~~~~~d~il~v~~~d 130 (309)
..+.+++.+.+-|++|++++++
T Consensus 235 ~~iAEyFrd~G~~Vll~~DslT 256 (434)
T PRK08472 235 MSVAEYFKNQGLDVLFIMDSVT 256 (434)
T ss_pred HHHHHHHHHcCCCEEEecccch
Confidence 3445566667899999986665
No 414
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.79 E-value=0.0089 Score=55.88 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=31.0
Q ss_pred cCCCChhhHHHHHHHHHHhhh---cCCCceEEEEEeCCCCCHHHHHHHHhC
Q 021699 14 IQQFPPATQTKLLELLGKLKQ---ENVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~~~~---~~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.-..|....+.+.++....++ ....+-+++|+|..++|||||.+.|++
T Consensus 45 ~ve~P~d~~~~~e~i~~~~~~~~~~~~~~~~vmvvG~vDSGKSTLt~~LaN 95 (398)
T COG1341 45 LVEVPEDRSEPLEEIADTWESKSESAGKVGVVMVVGPVDSGKSTLTTYLAN 95 (398)
T ss_pred cccCchHhhhHHHHHhhcccccchhccCCcEEEEECCcCcCHHHHHHHHHH
Confidence 445565555555444443222 233568999999999999998755554
No 415
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.78 E-value=0.017 Score=43.60 Aligned_cols=71 Identities=25% Similarity=0.395 Sum_probs=39.0
Q ss_pred EEEEe-CCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021699 42 ILVMG-KGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 42 I~vvG-~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
|++.| +.|+||||+.-.|...-. . . ..+....... ....+.|+|||+... ......+ ..+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~-~----~--~~~vl~~d~d-~~~d~viiD~p~~~~-----~~~~~~l------~~a 62 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALA-R----R--GKRVLLIDLD-PQYDYIIIDTPPSLG-----LLTRNAL------AAA 62 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHH-h----C--CCcEEEEeCC-CCCCEEEEeCcCCCC-----HHHHHHH------HHC
Confidence 56666 689999998765553210 0 0 0111111111 115789999999742 1222333 367
Q ss_pred cEEEEEEeCCc
Q 021699 121 DVLLYVDRLDV 131 (309)
Q Consensus 121 d~il~v~~~d~ 131 (309)
|.++++.+.+.
T Consensus 63 d~viv~~~~~~ 73 (104)
T cd02042 63 DLVLIPVQPSP 73 (104)
T ss_pred CEEEEeccCCH
Confidence 99999955543
No 416
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.78 E-value=0.023 Score=43.47 Aligned_cols=94 Identities=16% Similarity=0.185 Sum_probs=50.1
Q ss_pred EeCCCCCHHHHHHHHhCC-------CcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 45 MGKGGVGKSSTVNSIIGE-------KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 45 vG~~g~GKSSliN~l~g~-------~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
=++.|+||||+.-.|... ++...+..+.. +-.+.|+|||+... ......+
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~------------~~D~IIiDtpp~~~-----~~~~~~l------ 62 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF------------GDDYVVVDLGRSLD-----EVSLAAL------ 62 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC------------CCCEEEEeCCCCcC-----HHHHHHH------
Confidence 356999999987655532 21111111111 11799999998743 1222223
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEec
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 163 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk 163 (309)
..+|.++++...+...+ ..-..+++.+.+. +.....++.+|+|+
T Consensus 63 ~~aD~vlvvv~~~~~s~-~~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 63 DQADRVFLVTQQDLPSI-RNAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred HHcCeEEEEecCChHHH-HHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 36799999966553222 1223445555443 32111467788775
No 417
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.76 E-value=0.0019 Score=55.66 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+.-|+|+|.+|+||||+++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4677899999999999999999854
No 418
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.73 E-value=0.0015 Score=52.05 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=21.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999999999975
No 419
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.72 E-value=0.0015 Score=44.83 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=17.9
Q ss_pred EEEEEeCCCCCHHHHHHHHh
Q 021699 41 TILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~ 60 (309)
..+|.|++|+||||++.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999998775
No 420
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.71 E-value=0.0012 Score=57.83 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCc
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKA 64 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~ 64 (309)
-|.++|+||+|||||+|.+.|-..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999999653
No 421
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.70 E-value=0.0016 Score=55.85 Aligned_cols=25 Identities=32% Similarity=0.589 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.-.|+|+|.+|+|||||++.|.+..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3568999999999999999999864
No 422
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.69 E-value=0.0029 Score=55.38 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=28.1
Q ss_pred HHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 27 ELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 27 ~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
+.+..+......++-|+|.|.+|+|||||++.|.+.-
T Consensus 21 ~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 21 RRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred HHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3333333334568999999999999999999999753
No 423
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.66 E-value=0.0014 Score=54.85 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||+|-+.|-.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhcc
Confidence 68999999999999999999864
No 424
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.60 E-value=0.0021 Score=50.03 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.|+|.|.+|+||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999853
No 425
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.59 E-value=0.0034 Score=53.10 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.-.++++|++|+|||||+++|++.-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3579999999999999999999863
No 426
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.57 E-value=0.03 Score=50.02 Aligned_cols=21 Identities=43% Similarity=0.817 Sum_probs=16.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHh
Q 021699 40 LTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~ 60 (309)
+.|+|.|+.|+||||+.-.|.
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA 21 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLS 21 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHH
Confidence 468999999999999764443
No 427
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.56 E-value=0.029 Score=46.47 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=36.7
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021699 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
.+.||||||.... .....+ ..+|.++++...+...+.. -..+++.+.+. +. ....+|+|+++.
T Consensus 64 d~viiD~p~~~~~-----~~~~~l------~~ad~viiv~~~~~~s~~~-~~~~~~~~~~~-~~---~~~~iv~N~~~~ 126 (179)
T cd02036 64 DYILIDSPAGIER-----GFITAI------APADEALLVTTPEISSLRD-ADRVKGLLEAL-GI---KVVGVIVNRVRP 126 (179)
T ss_pred CEEEEECCCCCcH-----HHHHHH------HhCCcEEEEeCCCcchHHH-HHHHHHHHHHc-CC---ceEEEEEeCCcc
Confidence 7999999976321 222223 3778899986655432221 12344455442 21 457789999875
No 428
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=96.56 E-value=0.0098 Score=55.43 Aligned_cols=140 Identities=14% Similarity=0.130 Sum_probs=75.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcc-----------------cccC-------C------CCCCCeeEEEEeeeCC
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAV-----------------TVST-------F------QSEGPRPVMVSRSRAG 86 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~-----------------~~~~-------~------~~~t~~~~~~~~~~~g 86 (309)
..+++++++|...+||||+-..|+..... ..+- . .+-|.......++-..
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 46799999999999999998887753110 0000 0 0112222223334456
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCcc----ccChh-HHHHHHHHHHHhCccccCcEEEEE
Q 021699 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY----RVDNL-DKQITRAITDNFGEQIWKRALIVL 161 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~----~~~~~-d~~~l~~l~~~~g~~~~~~~iiV~ 161 (309)
+.+++.|+||.-. +..+ .+... .++|+-++|+++-.. .|... +.+---.+.+..|. ++.|+++
T Consensus 157 ~~ftiLDApGHk~--fv~n-mI~Ga------sqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv---~~lVv~v 224 (501)
T KOG0459|consen 157 KRFTILDAPGHKS--FVPN-MIGGA------SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV---KHLIVLI 224 (501)
T ss_pred eeEEeeccCcccc--cchh-hcccc------chhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhcc---ceEEEEE
Confidence 6899999999833 2221 11111 366777777444111 12111 12222233444454 6899999
Q ss_pred ecccCCCCCCCCHHHHHHhhhHHHHHhhc
Q 021699 162 THAQLSLPDRLDYEVFCSKRSEALLKFVS 190 (309)
Q Consensus 162 tk~D~~~~~~~~~~~~~~~~~~~l~~~i~ 190 (309)
||+|- +..+++.+.| +++.+.+..+++
T Consensus 225 NKMdd-PtvnWs~eRy-~E~~~k~~~fLr 251 (501)
T KOG0459|consen 225 NKMDD-PTVNWSNERY-EECKEKLQPFLR 251 (501)
T ss_pred EeccC-CccCcchhhH-HHHHHHHHHHHH
Confidence 99985 3344443333 233456666665
No 429
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.50 E-value=0.002 Score=56.04 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCc
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKA 64 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~ 64 (309)
-++|+|++|+|||||+|.|-|-+.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 479999999999999999988653
No 430
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.49 E-value=0.03 Score=43.94 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.-.+++.|++|+|||++++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998653
No 431
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.49 E-value=0.029 Score=48.84 Aligned_cols=44 Identities=16% Similarity=0.330 Sum_probs=26.6
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
.++|.+|.|+++...++. ..+-++.|.+..| .+++.+|+||+|.
T Consensus 154 ~~vD~vivVvDpS~~sl~--taeri~~L~~elg---~k~i~~V~NKv~e 197 (255)
T COG3640 154 EGVDLVIVVVDPSYKSLR--TAERIKELAEELG---IKRIFVVLNKVDE 197 (255)
T ss_pred cCCCEEEEEeCCcHHHHH--HHHHHHHHHHHhC---CceEEEEEeeccc
Confidence 578999999555432221 1122333333334 2799999999984
No 432
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.0036 Score=60.95 Aligned_cols=114 Identities=12% Similarity=0.142 Sum_probs=67.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcc--cccC---------------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAV--TVST---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 102 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~--~~~~---------------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~ 102 (309)
-+|.+.-.-.+||||+-+.++-.... ..+. ..+.|....-....|...++++|||||..|+..
T Consensus 40 RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~ 119 (721)
T KOG0465|consen 40 RNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTF 119 (721)
T ss_pred cccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEE
Confidence 36888888899999999888732110 0111 112232333344567788999999999988766
Q ss_pred CcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.-+..+..+ |.+++|...-+ +...+....-+.+.+. + .|-|..+||+|-..
T Consensus 120 EVeRALrVl---------DGaVlvl~aV~-GVqsQt~tV~rQ~~ry-~----vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 120 EVERALRVL---------DGAVLVLDAVA-GVESQTETVWRQMKRY-N----VPRICFINKMDRMG 170 (721)
T ss_pred Eehhhhhhc---------cCeEEEEEccc-ceehhhHHHHHHHHhc-C----CCeEEEEehhhhcC
Confidence 555554433 44444422211 3434444444444433 3 68888999999753
No 433
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.44 E-value=0.034 Score=46.35 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++|+|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999964
No 434
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.42 E-value=0.0089 Score=60.74 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=21.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
+|+++|++|+|||||.+-|.|--
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999999864
No 435
>PRK07261 topology modulation protein; Provisional
Probab=96.37 E-value=0.0028 Score=52.94 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+|+|+|.+|+|||||...|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999998643
No 436
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.26 E-value=0.045 Score=44.57 Aligned_cols=44 Identities=32% Similarity=0.374 Sum_probs=28.4
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++... .....+..+...+.. .+ +|+++|+||+|+.
T Consensus 11 ~~aD~vl~V~D~~~-~~~~~~~~l~~~~~~-~~----~p~iiv~NK~Dl~ 54 (156)
T cd01859 11 KESDVVLEVLDARD-PELTRSRKLERYVLE-LG----KKLLIVLNKADLV 54 (156)
T ss_pred hhCCEEEEEeeCCC-CcccCCHHHHHHHHh-CC----CcEEEEEEhHHhC
Confidence 47899999976532 223334444443322 12 7999999999985
No 437
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.25 E-value=0.0039 Score=54.88 Aligned_cols=25 Identities=24% Similarity=0.618 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+++++|+|++|+|||+|+-.|+..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 6799999999999999999988854
No 438
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.24 E-value=0.026 Score=60.84 Aligned_cols=25 Identities=40% Similarity=0.581 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.-.++|+|++|+|||||+.+++|+=
T Consensus 547 G~lvaVvG~vGsGKSSLL~AiLGEm 571 (1381)
T KOG0054|consen 547 GQLVAVVGPVGSGKSSLLSAILGEM 571 (1381)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4578999999999999999999984
No 439
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.23 E-value=0.0038 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
++|+|+|.||+||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999866
No 440
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.22 E-value=0.018 Score=46.32 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=32.5
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|+++.. ..+..+..+.+.+.... . .+|+++|+||+|+.
T Consensus 10 ~~aD~vl~ViD~~~-p~~~~~~~l~~~l~~~~-~--~k~~iivlNK~DL~ 55 (141)
T cd01857 10 ERSDIVVQIVDARN-PLLFRPPDLERYVKEVD-P--RKKNILLLNKADLL 55 (141)
T ss_pred hhCCEEEEEEEccC-CcccCCHHHHHHHHhcc-C--CCcEEEEEechhcC
Confidence 58999999977643 24445556666665542 1 27999999999985
No 441
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.21 E-value=0.006 Score=56.20 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..+|+|.|.+|+|||||+|+|++.
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999974
No 442
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.19 E-value=0.0044 Score=49.57 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.1
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021699 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
|+++|.+|+||||++..|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999854
No 443
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.17 E-value=0.0073 Score=50.34 Aligned_cols=38 Identities=21% Similarity=0.400 Sum_probs=22.2
Q ss_pred HHHHHHHh-hhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 25 LLELLGKL-KQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 25 l~~~~~~~-~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+.++...+ ......+-.++|.|.+|+|||+|++.+...
T Consensus 9 ~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 9 IERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp HHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34444444 233345678999999999999999998854
No 444
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.15 E-value=0.0097 Score=51.86 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=33.2
Q ss_pred hccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 10 EWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 10 ~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+-..++++...-.+.+...+..+.......-.+++.|++|+|||+|++++...
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34556665533233344444444332223356899999999999999999864
No 445
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.15 E-value=0.12 Score=46.94 Aligned_cols=136 Identities=15% Similarity=0.155 Sum_probs=69.8
Q ss_pred hccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEE
Q 021699 10 EWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTL 89 (309)
Q Consensus 10 ~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l 89 (309)
-|.|....... .+.|.+++.. ......-.++++|.||.|||++++.+....... .+ + . ....++
T Consensus 35 rWIgY~~A~~~-L~~L~~Ll~~--P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d-~--~---------~~~~PV 98 (302)
T PF05621_consen 35 RWIGYPRAKEA-LDRLEELLEY--PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SD-E--D---------AERIPV 98 (302)
T ss_pred CeecCHHHHHH-HHHHHHHHhC--CcccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CC-C--C---------CccccE
Confidence 36665443322 2334444443 122334679999999999999999998654211 11 0 0 012367
Q ss_pred EEEeCCCCCCCC-----------------CCcHHHHHHHHHhhhcCCCcEEEEEEe-CCc--cccChhHHHHHHHHHHHh
Q 021699 90 NIVDTPGLIEGG-----------------YVNYHAIQLIKRFLLNKTIDVLLYVDR-LDV--YRVDNLDKQITRAITDNF 149 (309)
Q Consensus 90 ~liDTPG~~~~~-----------------~~~~~~~~~i~~~~~~~~~d~il~v~~-~d~--~~~~~~d~~~l~~l~~~~ 149 (309)
..+.+|.-.+.. ....+....+...+..-++. ++++| +.. .+-......++..|+..
T Consensus 99 v~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vr--mLIIDE~H~lLaGs~~~qr~~Ln~LK~L- 175 (302)
T PF05621_consen 99 VYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVR--MLIIDEFHNLLAGSYRKQREFLNALKFL- 175 (302)
T ss_pred EEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCc--EEEeechHHHhcccHHHHHHHHHHHHHH-
Confidence 788887664411 11111111222233323444 34422 110 01112345566666555
Q ss_pred CccccCcEEEEEecc
Q 021699 150 GEQIWKRALIVLTHA 164 (309)
Q Consensus 150 g~~~~~~~iiV~tk~ 164 (309)
|.+...|+|.|+|.-
T Consensus 176 ~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 176 GNELQIPIVGVGTRE 190 (302)
T ss_pred hhccCCCeEEeccHH
Confidence 666668999998854
No 446
>PRK08118 topology modulation protein; Reviewed
Probab=96.14 E-value=0.0045 Score=51.55 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+|+|+|.+|+||||+...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988854
No 447
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.14 E-value=0.0046 Score=53.19 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++|+|++|+|||||++.|.|..
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 357999999999999999999974
No 448
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.11 E-value=0.0047 Score=51.90 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
=.++|+|++|+|||||+|.+++
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 5789999999999999999984
No 449
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.10 E-value=0.0049 Score=54.04 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 450
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=96.09 E-value=0.00013 Score=60.72 Aligned_cols=115 Identities=14% Similarity=0.155 Sum_probs=68.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCC-CCeeEEEEeeeCCe---EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAGF---TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~-t~~~~~~~~~~~g~---~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
++++|+|.-|+||+|++...+.... ..++..+ ..+.......++.. ++.+||.+|...++... +.
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nf--s~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mt---------rV 94 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNF--SYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMT---------RV 94 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHH--HHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceE---------EE
Confidence 6899999999999999988876542 1111111 11111112233333 56899999997555433 22
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHH----HhCccccCcEEEEEecccCC
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITD----NFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~----~~g~~~~~~~iiV~tk~D~~ 167 (309)
....+|+..+|++++.+.-.+....+.+.+-. -+|.. .|+++..||||..
T Consensus 95 yykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~P--v~~vllankCd~e 148 (229)
T KOG4423|consen 95 YYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTP--VPCVLLANKCDQE 148 (229)
T ss_pred EecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCc--chheeccchhccC
Confidence 33688999999888754322222334333322 22333 5789999999973
No 451
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.04 E-value=0.0055 Score=52.85 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++|+|++|+|||||++.|.|..
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999974
No 452
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.04 E-value=0.0054 Score=52.99 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++++|++|+|||||++.|.|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999964
No 453
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.04 E-value=0.0055 Score=53.00 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999974
No 454
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.03 E-value=0.0055 Score=51.79 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.7
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.|+|+|++|+||||+++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999998753
No 455
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=96.03 E-value=0.014 Score=55.77 Aligned_cols=112 Identities=17% Similarity=0.286 Sum_probs=62.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCC---------------eeEEEEe----------------eeCCe
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP---------------RPVMVSR----------------SRAGF 87 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~---------------~~~~~~~----------------~~~g~ 87 (309)
--++-|+.....|||||..+|.....-..+...+.++ ...-.+. .-++.
T Consensus 19 iRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~F 98 (842)
T KOG0469|consen 19 IRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGF 98 (842)
T ss_pred cccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcce
Confidence 3467889999999999999998664322222222211 1111111 11355
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeC-CccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021699 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRL-DVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~-d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
-+++||+||.-|+.. +.-..+ +-.|..|+|++. ++- .-..+.-+-+.+.+. ..-++|+||.|-
T Consensus 99 LiNLIDSPGHVDFSS---EVTAAL------RVTDGALVVVDcv~Gv-CVQTETVLrQA~~ER------IkPvlv~NK~DR 162 (842)
T KOG0469|consen 99 LINLIDSPGHVDFSS---EVTAAL------RVTDGALVVVDCVSGV-CVQTETVLRQAIAER------IKPVLVMNKMDR 162 (842)
T ss_pred eEEeccCCCcccchh---hhhhee------EeccCcEEEEEccCce-EechHHHHHHHHHhh------ccceEEeehhhH
Confidence 689999999976543 222222 345666777543 322 222333333344443 355778999985
No 456
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.03 E-value=0.0056 Score=53.10 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++|+|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357999999999999999999964
No 457
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.02 E-value=0.0062 Score=42.75 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=19.0
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021699 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
|++.|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999854
No 458
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.01 E-value=0.0058 Score=52.31 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|.-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999964
No 459
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.00 E-value=0.0051 Score=56.77 Aligned_cols=22 Identities=32% Similarity=0.661 Sum_probs=20.2
Q ss_pred EEEEeCCCCCHHHHHHHHhCCC
Q 021699 42 ILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~ 63 (309)
++++|++|+|||||++.|.|-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6788999999999999999965
No 460
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.00 E-value=0.031 Score=54.95 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCc
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKA 64 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~ 64 (309)
.=||+++|+.|+|||||++.|.|...
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~ 373 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELG 373 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcc
Confidence 35899999999999999999987653
No 461
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.99 E-value=0.0054 Score=52.59 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
|++|+++|..|+|||||++.+++.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 579999999999999999998875
No 462
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.99 E-value=0.0059 Score=52.94 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999874
No 463
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.99 E-value=0.096 Score=49.47 Aligned_cols=41 Identities=29% Similarity=0.507 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhhc--CCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 22 QTKLLELLGKLKQE--NVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 22 ~~~l~~~~~~~~~~--~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+++.++...+... +..+-.++|.|++|+|||++++.++..
T Consensus 36 e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 36 EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44455555554332 334567999999999999999999864
No 464
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.99 E-value=0.095 Score=49.75 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-+|+|||+.|+|||||+..|+|.
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcC
Confidence 58999999999999999999996
No 465
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.99 E-value=0.0061 Score=51.59 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 466
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=95.98 E-value=0.028 Score=51.79 Aligned_cols=82 Identities=13% Similarity=0.166 Sum_probs=49.0
Q ss_pred eEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc-c------ChhHHHHHHHHHHHh
Q 021699 77 PVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-V------DNLDKQITRAITDNF 149 (309)
Q Consensus 77 ~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~-~------~~~d~~~l~~l~~~~ 149 (309)
.....+.+++..+.++|++|.... .......+ .++++++||+++.... . ...-.+.+..+...+
T Consensus 151 i~~~~f~~~~~~~~~~DvgGq~~~---R~kW~~~f------~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~ 221 (317)
T cd00066 151 IVETKFTIKNLKFRMFDVGGQRSE---RKKWIHCF------EDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSIC 221 (317)
T ss_pred eeEEEEEecceEEEEECCCCCccc---chhHHHHh------CCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHH
Confidence 334456678889999999998432 22222222 5899999998875421 0 111123333333333
Q ss_pred Ccc--ccCcEEEEEecccCC
Q 021699 150 GEQ--IWKRALIVLTHAQLS 167 (309)
Q Consensus 150 g~~--~~~~~iiV~tk~D~~ 167 (309)
... ...|+++++||.|+.
T Consensus 222 ~~~~~~~~pill~~NK~D~f 241 (317)
T cd00066 222 NSRWFANTSIILFLNKKDLF 241 (317)
T ss_pred hCccccCCCEEEEccChHHH
Confidence 321 236999999999974
No 467
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.97 E-value=0.0097 Score=54.35 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..+|+|.|.+|+||||++|+|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~ 155 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAE 155 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999965
No 468
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.97 E-value=0.006 Score=52.47 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+++.|+|.|.+|+|||||.+.|.+.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999864
No 469
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.97 E-value=0.0057 Score=52.66 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=21.5
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 470
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.97 E-value=0.0061 Score=52.24 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++|+|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999964
No 471
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.97 E-value=0.0062 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999964
No 472
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.97 E-value=0.0052 Score=51.43 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.|+|+|.+|+||||+++.|.+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 473
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.96 E-value=0.0059 Score=52.51 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=20.8
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||+..|-+-+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 58899999999999999998765
No 474
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.96 E-value=0.0063 Score=52.46 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 475
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.95 E-value=0.006 Score=53.16 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++|+|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 368999999999999999999974
No 476
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.95 E-value=0.0066 Score=47.34 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.0
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021699 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
|+|.|.+|+||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998854
No 477
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.94 E-value=0.0062 Score=46.70 Aligned_cols=21 Identities=29% Similarity=0.664 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHh
Q 021699 40 LTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~ 60 (309)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 457999999999999999986
No 478
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.94 E-value=0.04 Score=44.02 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=25.5
Q ss_pred HHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 28 ~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+-+++.+.-...-.|++.|..|+|||||+..+...
T Consensus 11 l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 11 FGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 33344333233457999999999999999999865
No 479
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.94 E-value=0.0053 Score=52.53 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=19.9
Q ss_pred EEEEeCCCCCHHHHHHHHhCCC
Q 021699 42 ILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~ 63 (309)
|+|+|++|+||||++++|++.-
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998753
No 480
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.94 E-value=0.0069 Score=50.09 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++++|++|+|||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999974
No 481
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.93 E-value=0.011 Score=54.19 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=22.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-.+|++.|-+|+|||||+|+|++.-
T Consensus 173 r~NILisGGTGSGKTTlLNal~~~i 197 (355)
T COG4962 173 RCNILISGGTGSGKTTLLNALSGFI 197 (355)
T ss_pred ceeEEEeCCCCCCHHHHHHHHHhcC
Confidence 3899999999999999999999863
No 482
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.92 E-value=0.0068 Score=52.14 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999964
No 483
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.91 E-value=0.0066 Score=52.61 Aligned_cols=24 Identities=25% Similarity=0.602 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++|+|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999874
No 484
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.90 E-value=0.0069 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999964
No 485
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.90 E-value=0.0072 Score=50.68 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++++|++|+|||||++.|.|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999874
No 486
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.90 E-value=0.011 Score=54.50 Aligned_cols=25 Identities=48% Similarity=0.712 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
...+|+|+|.+|+|||||+|+|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999999999975
No 487
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.90 E-value=0.0068 Score=53.00 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++++|++|+|||||++.|.|..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999874
No 488
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.89 E-value=0.007 Score=52.47 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999974
No 489
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.89 E-value=0.0068 Score=53.35 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999864
No 490
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.87 E-value=0.005 Score=50.73 Aligned_cols=22 Identities=18% Similarity=0.484 Sum_probs=17.7
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
||+|+|.+|+|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999854
No 491
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.86 E-value=0.0072 Score=52.32 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 492
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.85 E-value=0.0058 Score=65.61 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.=||.|||+||+|||||+++|+.-
T Consensus 1166 ~eKVGIVGRTGaGKSSL~~aLFRl 1189 (1381)
T KOG0054|consen 1166 GEKVGIVGRTGAGKSSLILALFRL 1189 (1381)
T ss_pred CceEEEeCCCCCCHHHHHHHHHHh
Confidence 458999999999999999999964
No 493
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.85 E-value=0.011 Score=50.12 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
=.++++|++|+|||||+|-+.|-
T Consensus 32 e~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 32 ELVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred CEEEEEcCCCccHHHHHHHHhcC
Confidence 35788999999999999999985
No 494
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.85 E-value=0.0074 Score=52.72 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 495
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.84 E-value=0.0074 Score=51.93 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
...-|+|+|.+|+|||||++.|.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999864
No 496
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.83 E-value=0.0079 Score=51.29 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++|+|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999964
No 497
>PRK06217 hypothetical protein; Validated
Probab=95.83 E-value=0.0076 Score=50.79 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+|+|+|.+|+||||+...|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988854
No 498
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.83 E-value=0.0076 Score=52.16 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++++|++|+|||||++.|.|..
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 357899999999999999999964
No 499
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.83 E-value=0.0077 Score=52.09 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=.++|+|.+|+|||||++.|.|..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 368999999999999999999864
No 500
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.82 E-value=0.0074 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999999974
Done!