Query 021699
Match_columns 309
No_of_seqs 281 out of 2867
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 08:00:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021699.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021699hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h65_A Chloroplast outer envel 100.0 1.2E-37 4E-42 278.8 24.5 261 3-264 1-263 (270)
2 3def_A T7I23.11 protein; chlor 100.0 1.3E-37 4.5E-42 277.4 22.8 257 3-260 1-257 (262)
3 3t5d_A Septin-7; GTP-binding p 99.9 2.6E-24 8.8E-29 192.6 7.6 236 38-308 7-271 (274)
4 3lxx_A GTPase IMAP family memb 99.9 1.4E-21 4.8E-26 171.0 17.3 186 37-248 27-216 (239)
5 2hjg_A GTP-binding protein ENG 99.9 3.2E-22 1.1E-26 190.3 9.9 208 38-281 174-390 (436)
6 3lxw_A GTPase IMAP family memb 99.9 5.8E-21 2E-25 168.3 17.1 187 37-249 19-211 (247)
7 4dcu_A GTP-binding protein ENG 99.9 1.2E-21 4.2E-26 187.3 10.6 207 38-280 194-409 (456)
8 2qag_A Septin-2, protein NEDD5 99.8 5.6E-21 1.9E-25 177.4 8.7 257 8-309 14-304 (361)
9 1mky_A Probable GTP-binding pr 99.8 5.1E-19 1.8E-23 168.3 16.1 198 38-281 179-392 (439)
10 4dhe_A Probable GTP-binding pr 99.8 4.3E-18 1.5E-22 146.4 18.8 179 38-247 28-212 (223)
11 2xtp_A GTPase IMAP family memb 99.8 4.1E-18 1.4E-22 150.7 17.7 151 37-192 20-175 (260)
12 3iev_A GTP-binding protein ERA 99.8 7E-18 2.4E-22 153.2 18.7 122 38-167 9-135 (308)
13 1wf3_A GTP-binding protein; GT 99.8 1.3E-17 4.3E-22 151.1 18.9 125 38-168 6-131 (301)
14 2qu8_A Putative nucleolar GTP- 99.8 5.4E-17 1.8E-21 140.6 20.1 136 32-173 22-161 (228)
15 2dyk_A GTP-binding protein; GT 99.8 1.8E-17 6.2E-22 134.6 16.1 120 40-167 2-121 (161)
16 4djt_A GTP-binding nuclear pro 99.8 1.2E-17 4.2E-22 143.2 15.4 194 38-281 10-213 (218)
17 1svi_A GTP-binding protein YSX 99.8 5.5E-17 1.9E-21 136.3 19.0 167 38-244 22-193 (195)
18 3tkl_A RAS-related protein RAB 99.8 5.5E-17 1.9E-21 136.3 18.7 164 38-247 15-180 (196)
19 3tw8_B RAS-related protein RAB 99.8 3.1E-17 1.1E-21 135.7 16.8 124 38-174 8-133 (181)
20 2qag_B Septin-6, protein NEDD5 99.8 2.2E-19 7.6E-24 168.7 4.1 235 38-308 41-302 (427)
21 3i8s_A Ferrous iron transport 99.8 7.4E-18 2.5E-22 150.6 13.8 119 38-167 2-125 (274)
22 2g6b_A RAS-related protein RAB 99.7 6.9E-17 2.4E-21 133.7 17.7 165 38-247 9-175 (180)
23 3pqc_A Probable GTP-binding pr 99.7 2.5E-16 8.5E-21 131.9 21.3 168 38-245 22-193 (195)
24 1z2a_A RAS-related protein RAB 99.7 1.4E-16 4.9E-21 130.0 19.0 125 38-175 4-130 (168)
25 3iby_A Ferrous iron transport 99.7 1.5E-17 5E-22 147.2 13.7 160 40-243 2-164 (256)
26 1g16_A RAS-related protein SEC 99.7 1.4E-16 4.9E-21 130.3 18.4 118 38-167 2-121 (170)
27 3a1s_A Iron(II) transport prot 99.7 7.8E-17 2.7E-21 142.7 17.5 163 38-245 4-166 (258)
28 2hxs_A RAB-26, RAS-related pro 99.7 1.4E-16 4.6E-21 131.7 17.9 166 37-247 4-174 (178)
29 2fn4_A P23, RAS-related protei 99.7 1.7E-16 5.9E-21 131.1 18.5 126 37-174 7-134 (181)
30 2gj8_A MNME, tRNA modification 99.7 4.3E-17 1.5E-21 135.2 14.7 125 38-167 3-128 (172)
31 1z08_A RAS-related protein RAB 99.7 8.9E-17 3E-21 131.7 16.4 162 38-245 5-168 (170)
32 1z0j_A RAB-22, RAS-related pro 99.7 5.3E-17 1.8E-21 132.9 14.9 123 38-172 5-129 (170)
33 3t5g_A GTP-binding protein RHE 99.7 1.8E-16 6E-21 131.6 18.3 164 38-247 5-170 (181)
34 3q72_A GTP-binding protein RAD 99.7 8.2E-17 2.8E-21 131.5 15.7 124 39-175 2-127 (166)
35 3cph_A RAS-related protein SEC 99.7 2.5E-16 8.7E-21 134.1 19.3 118 38-167 19-138 (213)
36 2qag_C Septin-7; cell cycle, c 99.7 1E-18 3.4E-23 164.6 4.7 257 10-309 10-295 (418)
37 2bcg_Y Protein YP2, GTP-bindin 99.7 2.4E-16 8.3E-21 133.9 19.0 126 38-175 7-134 (206)
38 3clv_A RAB5 protein, putative; 99.7 3.4E-16 1.2E-20 131.6 19.6 159 38-245 6-203 (208)
39 2nzj_A GTP-binding protein REM 99.7 1.1E-16 3.9E-21 131.6 16.3 127 38-175 3-132 (175)
40 3kkq_A RAS-related protein M-R 99.7 3.6E-16 1.2E-20 129.9 19.4 129 35-175 14-144 (183)
41 3sop_A Neuronal-specific septi 99.7 5E-18 1.7E-22 151.4 8.4 237 39-309 2-270 (270)
42 2y8e_A RAB-protein 6, GH09086P 99.7 1.1E-16 3.9E-21 132.0 16.1 126 38-175 13-140 (179)
43 4dsu_A GTPase KRAS, isoform 2B 99.7 3.6E-16 1.2E-20 130.2 19.1 118 38-167 3-122 (189)
44 1u8z_A RAS-related protein RAL 99.7 5.3E-16 1.8E-20 126.3 19.6 126 38-175 3-130 (168)
45 2fg5_A RAB-22B, RAS-related pr 99.7 6.7E-17 2.3E-21 136.0 14.6 164 38-246 22-186 (192)
46 2erx_A GTP-binding protein DI- 99.7 1.9E-16 6.6E-21 129.6 16.8 164 38-246 2-167 (172)
47 2efe_B Small GTP-binding prote 99.7 3E-16 1E-20 129.9 18.0 162 38-245 11-174 (181)
48 2wji_A Ferrous iron transport 99.7 1.9E-16 6.6E-21 130.1 16.5 120 38-167 2-121 (165)
49 2qnr_A Septin-2, protein NEDD5 99.7 2.6E-18 8.9E-23 155.6 5.6 237 38-308 17-284 (301)
50 1kao_A RAP2A; GTP-binding prot 99.7 5.2E-16 1.8E-20 126.2 18.7 125 38-174 2-128 (167)
51 1ek0_A Protein (GTP-binding pr 99.7 2.1E-16 7.2E-21 129.1 16.4 119 39-169 3-123 (170)
52 4dkx_A RAS-related protein RAB 99.7 2.5E-16 8.5E-21 135.8 17.5 163 38-246 12-176 (216)
53 1c1y_A RAS-related protein RAP 99.7 1.7E-16 5.7E-21 129.5 15.5 125 38-174 2-128 (167)
54 2bme_A RAB4A, RAS-related prot 99.7 1.7E-16 6E-21 132.1 15.6 126 38-175 9-136 (186)
55 2lkc_A Translation initiation 99.7 2E-16 6.7E-21 130.7 15.8 115 38-168 7-121 (178)
56 2gf9_A RAS-related protein RAB 99.7 5.5E-16 1.9E-20 129.9 18.5 125 38-174 21-147 (189)
57 2bov_A RAla, RAS-related prote 99.7 3.8E-16 1.3E-20 132.1 17.7 127 37-175 12-140 (206)
58 2a5j_A RAS-related protein RAB 99.7 4.9E-16 1.7E-20 130.5 18.2 126 38-175 20-147 (191)
59 2oil_A CATX-8, RAS-related pro 99.7 1.8E-16 6.3E-21 133.1 15.5 126 37-174 23-150 (193)
60 1r2q_A RAS-related protein RAB 99.7 2E-16 7E-21 129.2 15.1 125 38-175 5-132 (170)
61 1z0f_A RAB14, member RAS oncog 99.7 8.9E-16 3.1E-20 126.6 19.1 126 38-175 14-141 (179)
62 3k53_A Ferrous iron transport 99.7 3.8E-16 1.3E-20 139.1 17.9 120 39-167 3-122 (271)
63 1xzp_A Probable tRNA modificat 99.7 8.5E-17 2.9E-21 154.2 14.5 156 39-245 243-404 (482)
64 2a9k_A RAS-related protein RAL 99.7 9.7E-16 3.3E-20 127.3 19.2 127 37-175 16-144 (187)
65 2fu5_C RAS-related protein RAB 99.7 7.2E-17 2.5E-21 134.2 12.2 126 38-175 7-134 (183)
66 2o52_A RAS-related protein RAB 99.7 2.9E-16 1E-20 133.1 16.2 126 38-175 24-151 (200)
67 2ce2_X GTPase HRAS; signaling 99.7 1.4E-15 4.7E-20 123.4 19.5 119 38-168 2-122 (166)
68 3con_A GTPase NRAS; structural 99.7 9.6E-16 3.3E-20 128.3 18.8 121 36-168 18-140 (190)
69 3gee_A MNME, tRNA modification 99.7 7.9E-17 2.7E-21 154.3 13.7 161 38-245 232-397 (476)
70 3oes_A GTPase rhebl1; small GT 99.7 1.5E-16 5.1E-21 134.8 13.8 164 38-247 23-188 (201)
71 3q85_A GTP-binding protein REM 99.7 6.6E-16 2.2E-20 126.5 16.8 126 39-175 2-130 (169)
72 2il1_A RAB12; G-protein, GDP, 99.7 6E-16 2.1E-20 130.2 16.8 125 38-174 25-151 (192)
73 2hup_A RAS-related protein RAB 99.7 8.2E-16 2.8E-20 130.5 17.5 126 37-175 27-155 (201)
74 1mky_A Probable GTP-binding pr 99.7 2E-16 7E-21 150.4 15.1 119 41-167 3-123 (439)
75 3cpj_B GTP-binding protein YPT 99.7 6.8E-16 2.3E-20 133.1 17.0 165 38-248 12-178 (223)
76 1zj6_A ADP-ribosylation factor 99.7 2.8E-15 9.6E-20 125.3 20.2 165 37-247 14-179 (187)
77 3b1v_A Ferrous iron uptake tra 99.7 3.8E-16 1.3E-20 139.4 15.6 118 39-167 3-120 (272)
78 1fzq_A ADP-ribosylation factor 99.7 1.4E-15 4.7E-20 126.9 18.2 127 28-169 5-132 (181)
79 1upt_A ARL1, ADP-ribosylation 99.7 6.5E-16 2.2E-20 126.6 15.9 117 38-169 6-123 (171)
80 3reg_A RHO-like small GTPase; 99.7 8.7E-16 3E-20 129.2 17.0 119 37-169 21-142 (194)
81 1z06_A RAS-related protein RAB 99.7 1.4E-15 4.8E-20 127.3 18.1 127 38-174 19-147 (189)
82 2wjg_A FEOB, ferrous iron tran 99.7 1.1E-15 3.7E-20 127.6 17.3 167 37-248 5-171 (188)
83 2q3h_A RAS homolog gene family 99.7 1.6E-15 5.5E-20 128.1 18.3 118 37-168 18-138 (201)
84 3c5c_A RAS-like protein 12; GD 99.7 2.4E-15 8.3E-20 126.1 19.2 126 37-175 19-148 (187)
85 1wms_A RAB-9, RAB9, RAS-relate 99.7 2.6E-15 9E-20 123.8 19.1 165 38-246 6-174 (177)
86 2gf0_A GTP-binding protein DI- 99.7 1.1E-15 3.9E-20 128.5 17.2 167 37-250 6-175 (199)
87 2ew1_A RAS-related protein RAB 99.7 1.2E-15 4E-20 129.9 17.3 126 38-175 25-152 (201)
88 1ksh_A ARF-like protein 2; sma 99.7 8.6E-16 2.9E-20 128.1 16.1 164 38-247 17-181 (186)
89 2atx_A Small GTP binding prote 99.7 2.2E-15 7.5E-20 126.6 18.4 117 38-168 17-136 (194)
90 3bc1_A RAS-related protein RAB 99.7 1.4E-15 4.9E-20 127.0 17.1 126 38-174 10-147 (195)
91 1ky3_A GTP-binding protein YPT 99.7 7.1E-16 2.4E-20 127.5 15.1 120 38-167 7-131 (182)
92 2atv_A RERG, RAS-like estrogen 99.7 1.8E-15 6.1E-20 127.5 17.6 125 38-175 27-153 (196)
93 1mh1_A RAC1; GTP-binding, GTPa 99.7 1.1E-15 3.7E-20 127.0 16.0 117 38-168 4-123 (186)
94 3dz8_A RAS-related protein RAB 99.7 4.9E-16 1.7E-20 130.5 14.0 127 38-175 22-149 (191)
95 2p5s_A RAS and EF-hand domain 99.7 1.5E-15 5.3E-20 128.4 17.1 118 38-167 27-146 (199)
96 3geh_A MNME, tRNA modification 99.7 2.7E-16 9.2E-21 150.1 13.8 162 38-247 223-385 (462)
97 1zbd_A Rabphilin-3A; G protein 99.7 1.9E-15 6.7E-20 127.8 17.7 124 39-174 8-133 (203)
98 2j1l_A RHO-related GTP-binding 99.7 1.4E-15 4.8E-20 130.3 17.0 118 37-168 32-152 (214)
99 2fv8_A H6, RHO-related GTP-bin 99.7 1.7E-15 5.8E-20 129.0 17.3 117 38-168 24-143 (207)
100 2h57_A ADP-ribosylation factor 99.7 1.3E-15 4.4E-20 127.7 16.0 119 38-168 20-140 (190)
101 3qq5_A Small GTP-binding prote 99.7 1.4E-16 4.6E-21 150.4 10.9 124 38-171 33-157 (423)
102 1vg8_A RAS-related protein RAB 99.7 2E-15 6.9E-20 127.9 17.1 120 38-167 7-130 (207)
103 3cbq_A GTP-binding protein REM 99.7 4.4E-15 1.5E-19 125.6 19.0 165 38-247 22-189 (195)
104 2b6h_A ADP-ribosylation factor 99.7 3.4E-15 1.2E-19 125.8 17.9 116 38-168 28-144 (192)
105 2x77_A ADP-ribosylation factor 99.7 1E-15 3.5E-20 128.1 14.5 118 37-169 20-138 (189)
106 4gzl_A RAS-related C3 botulinu 99.7 4.7E-16 1.6E-20 132.3 12.7 118 37-168 28-148 (204)
107 1x3s_A RAS-related protein RAB 99.7 2E-15 6.8E-20 126.5 16.3 164 38-247 14-179 (195)
108 2h17_A ADP-ribosylation factor 99.7 1.8E-15 6.3E-20 125.9 15.5 118 36-168 18-136 (181)
109 1r8s_A ADP-ribosylation factor 99.7 2.8E-15 9.6E-20 122.0 16.3 114 40-168 1-115 (164)
110 1zd9_A ADP-ribosylation factor 99.7 1.9E-15 6.4E-20 126.7 15.5 117 38-168 21-138 (188)
111 4bas_A ADP-ribosylation factor 99.7 1.8E-15 6.1E-20 127.3 15.4 122 36-169 14-142 (199)
112 2e87_A Hypothetical protein PH 99.7 3.9E-15 1.3E-19 137.8 18.9 125 37-167 165-293 (357)
113 2gco_A H9, RHO-related GTP-bin 99.7 2.6E-15 8.8E-20 127.3 16.2 117 38-168 24-143 (201)
114 1moz_A ARL1, ADP-ribosylation 99.7 1.7E-15 5.7E-20 125.8 14.6 117 37-168 16-133 (183)
115 2yc2_C IFT27, small RAB-relate 99.7 7.8E-16 2.7E-20 130.3 12.1 122 38-168 19-146 (208)
116 3llu_A RAS-related GTP-binding 99.6 6.6E-15 2.3E-19 124.2 17.5 125 37-168 18-143 (196)
117 2j0v_A RAC-like GTP-binding pr 99.6 2.9E-15 9.8E-20 127.8 15.1 117 38-168 8-127 (212)
118 2iwr_A Centaurin gamma 1; ANK 99.6 1.5E-14 5.2E-19 119.5 19.0 114 37-167 5-121 (178)
119 1ega_A Protein (GTP-binding pr 99.6 8.8E-16 3E-20 138.9 11.9 121 38-167 7-129 (301)
120 3o47_A ADP-ribosylation factor 99.6 5.2E-15 1.8E-19 135.5 17.1 163 38-246 164-327 (329)
121 3bwd_D RAC-like GTP-binding pr 99.6 8.1E-16 2.8E-20 127.5 10.4 117 38-168 7-126 (182)
122 3gj0_A GTP-binding nuclear pro 99.6 8.4E-16 2.9E-20 132.1 10.7 121 36-168 12-133 (221)
123 1m2o_B GTP-binding protein SAR 99.6 5.7E-15 1.9E-19 124.2 15.3 116 38-168 22-138 (190)
124 2f7s_A C25KG, RAS-related prot 99.6 2.1E-15 7.1E-20 129.1 12.7 124 37-173 23-160 (217)
125 2fh5_B SR-beta, signal recogni 99.6 1.7E-14 5.9E-19 123.1 18.3 118 38-170 6-131 (214)
126 2j69_A Bacterial dynamin-like 99.6 3E-15 1E-19 149.7 15.6 138 21-169 51-245 (695)
127 1f6b_A SAR1; gtpases, N-termin 99.6 5.1E-15 1.8E-19 125.3 14.8 117 37-168 23-140 (198)
128 3l0i_B RAS-related protein RAB 99.6 3E-17 1E-21 138.9 0.8 122 38-171 32-155 (199)
129 2cxx_A Probable GTP-binding pr 99.6 3.6E-14 1.2E-18 118.2 19.0 117 40-168 2-136 (190)
130 2ged_A SR-beta, signal recogni 99.6 2.9E-15 1E-19 125.6 12.2 154 20-188 28-188 (193)
131 1m7b_A RND3/RHOE small GTP-bin 99.6 8.3E-15 2.9E-19 122.2 14.9 116 38-167 6-124 (184)
132 2g3y_A GTP-binding protein GEM 99.6 3.6E-14 1.2E-18 121.8 19.1 128 38-175 36-166 (211)
133 2hjg_A GTP-binding protein ENG 99.6 5.2E-16 1.8E-20 147.5 8.1 120 40-167 4-124 (436)
134 1jwy_B Dynamin A GTPase domain 99.6 3.3E-15 1.1E-19 135.5 13.0 138 25-170 10-214 (315)
135 4dcu_A GTP-binding protein ENG 99.6 7.5E-16 2.6E-20 147.2 8.7 122 38-167 22-144 (456)
136 4a9a_A Ribosome-interacting GT 99.6 8.2E-16 2.8E-20 142.6 8.6 148 9-166 26-194 (376)
137 2wkq_A NPH1-1, RAS-related C3 99.6 1.7E-14 5.7E-19 131.2 17.1 125 30-168 146-273 (332)
138 1gwn_A RHO-related GTP-binding 99.6 9.7E-15 3.3E-19 124.5 14.5 117 37-167 26-145 (205)
139 3ihw_A Centg3; RAS, centaurin, 99.6 3.1E-14 1.1E-18 119.1 17.2 114 36-167 17-132 (184)
140 2cjw_A GTP-binding protein GEM 99.6 2.5E-14 8.6E-19 120.5 16.4 126 38-174 5-134 (192)
141 3t1o_A Gliding protein MGLA; G 99.6 5.8E-15 2E-19 123.7 11.8 121 38-168 13-149 (198)
142 3q3j_B RHO-related GTP-binding 99.6 1.2E-14 4.2E-19 124.6 14.1 118 37-168 25-145 (214)
143 3r7w_A Gtpase1, GTP-binding pr 99.6 6.3E-15 2.2E-19 133.6 12.7 126 38-168 2-129 (307)
144 1lnz_A SPO0B-associated GTP-bi 99.6 7.3E-15 2.5E-19 135.0 12.6 120 41-167 160-287 (342)
145 2qtf_A Protein HFLX, GTP-bindi 99.6 1.3E-13 4.4E-18 127.8 20.8 125 39-168 178-306 (364)
146 2aka_B Dynamin-1; fusion prote 99.6 5.5E-14 1.9E-18 126.2 16.6 125 38-170 25-208 (299)
147 3lvq_E ARF-GAP with SH3 domain 99.6 3.1E-14 1.1E-18 137.2 15.3 163 38-246 321-484 (497)
148 3p26_A Elongation factor 1 alp 99.6 9.2E-14 3.2E-18 133.6 18.2 155 36-213 30-220 (483)
149 1wb1_A Translation elongation 99.5 1.3E-13 4.3E-18 132.5 17.6 165 37-244 17-187 (482)
150 3sjy_A Translation initiation 99.5 9.2E-14 3.1E-18 130.6 16.1 169 37-247 6-193 (403)
151 2zej_A Dardarin, leucine-rich 99.5 5.2E-14 1.8E-18 117.5 12.5 116 39-167 2-125 (184)
152 3th5_A RAS-related C3 botulinu 99.3 6.9E-16 2.4E-20 130.9 0.0 117 38-168 29-148 (204)
153 3j2k_7 ERF3, eukaryotic polype 99.5 3.2E-13 1.1E-17 128.3 18.2 157 37-213 15-207 (439)
154 3dpu_A RAB family protein; roc 99.5 2.3E-13 8E-18 132.4 17.4 123 36-174 38-170 (535)
155 3t34_A Dynamin-related protein 99.5 1.3E-13 4.6E-18 127.5 14.0 125 40-171 35-220 (360)
156 2x2e_A Dynamin-1; nitration, h 99.5 1.2E-13 4E-18 127.7 13.5 126 37-170 29-213 (353)
157 2c78_A Elongation factor TU-A; 99.5 1.5E-13 5.2E-18 129.2 13.5 184 37-246 9-212 (405)
158 2f9l_A RAB11B, member RAS onco 99.5 1.8E-12 6.2E-17 109.4 18.5 123 39-173 5-129 (199)
159 1nrj_B SR-beta, signal recogni 99.5 3.3E-13 1.1E-17 115.4 13.9 123 37-170 10-136 (218)
160 1zun_B Sulfate adenylate trans 99.5 5.3E-13 1.8E-17 126.6 16.4 117 38-168 23-171 (434)
161 3tr5_A RF-3, peptide chain rel 99.5 2.4E-13 8.2E-18 131.7 14.0 115 38-167 12-147 (528)
162 2qpt_A EH domain-containing pr 99.5 1.4E-13 4.6E-18 134.2 11.8 123 39-168 65-232 (550)
163 3izq_1 HBS1P, elongation facto 99.5 1.7E-13 5.9E-18 135.0 12.5 161 37-224 165-361 (611)
164 1wxq_A GTP-binding protein; st 99.5 1E-13 3.5E-18 129.9 10.0 88 40-131 1-113 (397)
165 1kk1_A EIF2gamma; initiation o 99.5 3.6E-12 1.2E-16 120.0 20.7 167 38-246 9-200 (410)
166 3zvr_A Dynamin-1; hydrolase, D 99.5 5.4E-13 1.9E-17 133.3 15.7 127 37-171 49-234 (772)
167 1f60_A Elongation factor EEF1A 99.5 1.7E-13 5.7E-18 130.9 10.2 117 38-167 6-158 (458)
168 1oix_A RAS-related protein RAB 99.5 7.1E-12 2.4E-16 105.2 18.9 119 39-169 29-149 (191)
169 1d2e_A Elongation factor TU (E 99.4 1.4E-12 4.9E-17 122.3 16.0 174 38-246 2-195 (397)
170 1s0u_A EIF-2-gamma, translatio 99.4 7.5E-12 2.6E-16 117.7 20.6 167 38-246 7-198 (408)
171 2elf_A Protein translation elo 99.4 3.2E-12 1.1E-16 118.7 17.4 133 41-213 23-159 (370)
172 3izy_P Translation initiation 99.4 3.3E-14 1.1E-18 137.6 3.5 115 38-168 3-118 (537)
173 1pui_A ENGB, probable GTP-bind 99.4 9.9E-12 3.4E-16 105.4 18.4 121 38-167 25-150 (210)
174 1jny_A EF-1-alpha, elongation 99.4 1.2E-12 4.2E-17 124.2 13.2 155 38-213 5-195 (435)
175 3mca_A HBS1, elongation factor 99.4 7.8E-14 2.7E-18 137.0 3.5 154 37-213 175-365 (592)
176 1g7s_A Translation initiation 99.4 6.6E-12 2.3E-16 123.2 14.6 115 38-168 4-136 (594)
177 3avx_A Elongation factor TS, e 99.3 3.4E-11 1.2E-15 124.2 19.4 173 37-245 294-485 (1289)
178 1udx_A The GTP-binding protein 99.3 5.5E-11 1.9E-15 111.8 18.8 163 41-247 159-326 (416)
179 3r7w_B Gtpase2, GTP-binding pr 99.3 7.2E-12 2.4E-16 113.7 11.1 120 41-168 1-120 (331)
180 1r5b_A Eukaryotic peptide chai 99.3 8.4E-12 2.9E-16 119.4 11.8 116 38-167 42-194 (467)
181 2ywe_A GTP-binding protein LEP 99.3 2.6E-11 8.9E-16 118.8 15.1 161 39-247 6-185 (600)
182 1zo1_I IF2, translation initia 99.3 9E-13 3.1E-17 126.5 4.5 115 38-168 3-117 (501)
183 2xex_A Elongation factor G; GT 99.3 1.8E-11 6.1E-16 122.4 13.8 116 38-168 9-141 (693)
184 2h5e_A Peptide chain release f 99.3 1.1E-11 3.7E-16 120.2 11.8 116 38-168 12-148 (529)
185 3cb4_D GTP-binding protein LEP 99.3 2.6E-11 9E-16 118.9 14.0 161 39-247 4-183 (599)
186 1puj_A YLQF, conserved hypothe 99.3 6.9E-12 2.4E-16 112.2 9.0 93 11-106 90-184 (282)
187 3p32_A Probable GTPase RV1496/ 99.3 6E-12 2.1E-16 116.3 8.2 176 24-246 64-284 (355)
188 3h2y_A GTPase family protein; 99.3 7.8E-13 2.7E-17 122.8 1.4 141 20-170 142-289 (368)
189 3ec1_A YQEH GTPase; atnos1, at 99.3 4.1E-13 1.4E-17 124.7 -0.9 138 23-170 147-290 (369)
190 3c5h_A Glucocorticoid receptor 99.2 8.5E-12 2.9E-16 109.9 5.5 47 119-167 162-211 (255)
191 1dar_A EF-G, elongation factor 99.2 7E-11 2.4E-15 118.1 12.8 116 38-168 11-143 (691)
192 2www_A Methylmalonic aciduria 99.2 5.1E-11 1.7E-15 109.8 10.8 24 38-61 73-96 (349)
193 1n0u_A EF-2, elongation factor 99.2 7.8E-11 2.7E-15 120.1 12.7 115 38-167 18-163 (842)
194 1jal_A YCHF protein; nucleotid 99.2 2.6E-11 8.8E-16 111.8 7.1 85 40-131 3-108 (363)
195 2dy1_A Elongation factor G; tr 99.2 6.2E-10 2.1E-14 110.8 17.2 115 38-167 8-139 (665)
196 2rdo_7 EF-G, elongation factor 99.2 3.3E-10 1.1E-14 113.4 15.3 116 38-168 9-148 (704)
197 2p67_A LAO/AO transport system 99.1 5.1E-10 1.8E-14 102.7 12.9 119 27-167 44-207 (341)
198 2ohf_A Protein OLA1, GTP-bindi 99.1 1.5E-10 5.1E-15 107.8 7.0 87 37-130 20-127 (396)
199 3vqt_A RF-3, peptide chain rel 99.1 2.6E-09 8.9E-14 103.9 15.4 123 39-179 31-174 (548)
200 1f5n_A Interferon-induced guan 99.0 6.1E-10 2.1E-14 108.7 10.6 104 35-147 34-147 (592)
201 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 4.1E-10 1.4E-14 105.0 8.5 87 38-130 19-126 (392)
202 2wsm_A Hydrogenase expression/ 99.0 2.1E-09 7.1E-14 91.8 11.8 25 38-62 29-53 (221)
203 2qm8_A GTPase/ATPase; G protei 99.0 5.1E-09 1.8E-13 95.9 15.0 35 27-61 43-77 (337)
204 2dby_A GTP-binding protein; GD 99.0 5.6E-10 1.9E-14 103.3 8.0 85 40-131 2-111 (368)
205 3cnl_A YLQF, putative uncharac 99.0 3.9E-10 1.3E-14 99.8 5.7 75 22-102 85-159 (262)
206 1tq4_A IIGP1, interferon-induc 98.9 2.8E-08 9.7E-13 93.1 17.2 117 38-167 68-188 (413)
207 2j37_W Signal recognition part 98.9 5E-09 1.7E-13 100.6 11.5 118 38-167 100-253 (504)
208 1yrb_A ATP(GTP)binding protein 98.8 1.2E-08 4.1E-13 89.4 10.0 35 36-70 11-50 (262)
209 3j25_A Tetracycline resistance 98.8 4.3E-09 1.5E-13 104.3 5.8 112 41-167 4-132 (638)
210 4fn5_A EF-G 1, elongation fact 98.8 1.4E-07 4.7E-12 94.6 16.1 121 40-178 14-158 (709)
211 3szr_A Interferon-induced GTP- 98.7 8.7E-08 3E-12 94.4 13.5 41 23-63 25-69 (608)
212 3dm5_A SRP54, signal recogniti 98.7 1.8E-07 6.2E-12 88.2 13.5 119 38-167 99-252 (443)
213 2v3c_C SRP54, signal recogniti 98.7 2.1E-08 7E-13 94.8 6.9 117 39-167 99-251 (432)
214 2hf9_A Probable hydrogenase ni 98.5 6.9E-07 2.4E-11 76.2 10.3 25 38-62 37-61 (226)
215 3kl4_A SRP54, signal recogniti 98.4 1.5E-06 5.1E-11 81.8 10.7 120 39-167 97-251 (433)
216 3q5d_A Atlastin-1; G protein, 98.4 9.9E-07 3.4E-11 83.3 9.5 102 38-147 66-195 (447)
217 3ohm_A Guanine nucleotide-bind 98.3 1.6E-06 5.5E-11 78.7 9.7 80 79-167 159-247 (327)
218 4fid_A G protein alpha subunit 98.3 8E-06 2.7E-10 74.5 13.1 80 79-167 153-241 (340)
219 2xxa_A Signal recognition part 98.2 4.1E-06 1.4E-10 79.0 9.5 119 38-167 99-253 (433)
220 1j8m_F SRP54, signal recogniti 98.1 1.3E-05 4.6E-10 71.7 10.0 120 39-167 98-252 (297)
221 3e70_C DPA, signal recognition 98.0 4.8E-05 1.6E-09 69.1 12.7 119 38-167 128-281 (328)
222 1t9h_A YLOQ, probable GTPase E 97.9 3.4E-06 1.2E-10 75.9 2.8 58 40-101 174-238 (307)
223 2yhs_A FTSY, cell division pro 97.9 7.9E-05 2.7E-09 71.0 11.8 118 39-167 293-451 (503)
224 1rj9_A FTSY, signal recognitio 97.9 7.5E-05 2.6E-09 67.1 10.7 118 39-167 102-260 (304)
225 2px0_A Flagellar biosynthesis 97.8 6.1E-05 2.1E-09 67.4 9.1 118 39-167 105-252 (296)
226 2yv5_A YJEQ protein; hydrolase 97.8 4.3E-05 1.5E-09 68.6 8.0 57 40-100 166-229 (302)
227 2rcn_A Probable GTPase ENGC; Y 97.7 2.4E-05 8.2E-10 71.8 3.9 58 40-100 216-281 (358)
228 1vma_A Cell division protein F 97.6 9.4E-05 3.2E-09 66.5 7.4 23 39-61 104-126 (306)
229 1u0l_A Probable GTPase ENGC; p 97.6 5.9E-05 2E-09 67.6 6.0 59 40-101 170-235 (301)
230 4ido_A Atlastin-1; GTPase, GTP 97.6 0.00055 1.9E-08 64.4 12.7 101 40-147 68-195 (457)
231 1cip_A Protein (guanine nucleo 97.6 0.00015 5.1E-09 66.5 8.4 80 79-167 185-273 (353)
232 1zu4_A FTSY; GTPase, signal re 97.6 0.0008 2.7E-08 60.8 13.0 23 39-61 105-127 (320)
233 2ffh_A Protein (FFH); SRP54, s 97.4 0.00015 5.1E-09 68.0 6.0 72 85-167 179-250 (425)
234 2og2_A Putative signal recogni 97.4 0.0019 6.5E-08 59.2 12.6 24 39-62 157-180 (359)
235 3b9q_A Chloroplast SRP recepto 97.4 0.00095 3.2E-08 59.8 10.3 23 40-62 101-123 (302)
236 3ney_A 55 kDa erythrocyte memb 97.4 1.2E-05 3.9E-10 67.8 -2.3 56 40-97 20-76 (197)
237 1ls1_A Signal recognition part 97.2 0.0033 1.1E-07 55.9 11.7 72 85-167 179-250 (295)
238 1azs_C GS-alpha; complex (lyas 97.2 0.00042 1.4E-08 64.5 5.9 79 80-167 210-297 (402)
239 1zcb_A G alpha I/13; GTP-bindi 97.2 0.0003 1E-08 64.7 4.9 79 80-167 194-281 (362)
240 1kgd_A CASK, peripheral plasma 97.0 0.00022 7.4E-09 58.7 1.9 23 40-62 6-28 (180)
241 4dzz_A Plasmid partitioning pr 97.0 0.0015 5E-08 54.3 6.6 68 86-166 75-142 (206)
242 3c8u_A Fructokinase; YP_612366 96.9 0.00052 1.8E-08 57.7 3.8 35 28-62 11-45 (208)
243 2xtz_A Guanine nucleotide-bind 96.9 0.0014 4.7E-08 60.0 6.8 73 86-167 182-263 (354)
244 1ye8_A Protein THEP1, hypothet 96.8 0.00051 1.8E-08 56.6 2.7 24 40-63 1-24 (178)
245 1ex7_A Guanylate kinase; subst 96.7 0.00023 8E-09 59.2 -0.4 21 42-62 4-24 (186)
246 1lvg_A Guanylate kinase, GMP k 96.7 0.00067 2.3E-08 56.7 2.5 23 40-62 5-27 (198)
247 1znw_A Guanylate kinase, GMP k 96.5 0.00095 3.3E-08 56.0 2.5 23 41-63 22-44 (207)
248 2kjq_A DNAA-related protein; s 96.5 0.011 3.9E-07 46.9 8.3 24 39-62 36-59 (149)
249 1fnn_A CDC6P, cell division co 96.4 0.03 1E-06 50.9 12.2 22 41-62 46-67 (389)
250 3tif_A Uncharacterized ABC tra 96.4 0.0015 5.1E-08 56.3 3.1 23 41-63 33-55 (235)
251 1z6g_A Guanylate kinase; struc 96.4 0.0012 4.2E-08 56.0 2.5 24 40-63 24-47 (218)
252 1s96_A Guanylate kinase, GMP k 96.4 0.0012 4.2E-08 56.2 2.5 24 40-63 17-40 (219)
253 3a00_A Guanylate kinase, GMP k 96.4 0.0012 4.2E-08 54.3 2.4 22 42-63 4-25 (186)
254 2pcj_A ABC transporter, lipopr 96.4 0.0017 5.8E-08 55.5 3.2 23 41-63 32-54 (224)
255 3tlx_A Adenylate kinase 2; str 96.4 0.0043 1.5E-07 53.4 5.8 39 23-61 13-51 (243)
256 1zp6_A Hypothetical protein AT 96.4 0.0019 6.6E-08 53.0 3.4 23 40-62 10-32 (191)
257 3tr0_A Guanylate kinase, GMP k 96.4 0.0013 4.6E-08 54.5 2.5 23 40-62 8-30 (205)
258 3tau_A Guanylate kinase, GMP k 96.3 0.0018 6.2E-08 54.4 2.9 25 39-63 8-32 (208)
259 4gp7_A Metallophosphoesterase; 96.3 0.0021 7E-08 52.3 3.0 22 41-62 11-32 (171)
260 2cbz_A Multidrug resistance-as 96.3 0.0023 7.9E-08 55.1 3.4 23 41-63 33-55 (237)
261 2onk_A Molybdate/tungstate ABC 96.2 0.0023 7.8E-08 55.3 3.2 23 41-63 26-48 (240)
262 1b0u_A Histidine permease; ABC 96.2 0.0023 7.7E-08 56.0 3.1 23 41-63 34-56 (262)
263 3gfo_A Cobalt import ATP-bindi 96.2 0.0023 7.8E-08 56.5 3.1 23 41-63 36-58 (275)
264 4g1u_C Hemin import ATP-bindin 96.2 0.0023 7.7E-08 56.2 3.1 23 41-63 39-61 (266)
265 1mv5_A LMRA, multidrug resista 96.2 0.0025 8.7E-08 55.0 3.3 23 41-63 30-52 (243)
266 1sgw_A Putative ABC transporte 96.2 0.0024 8.2E-08 54.2 3.1 23 41-63 37-59 (214)
267 1g6h_A High-affinity branched- 96.2 0.0023 8E-08 55.7 3.1 23 41-63 35-57 (257)
268 2ff7_A Alpha-hemolysin translo 96.2 0.0026 8.9E-08 55.1 3.4 23 41-63 37-59 (247)
269 1odf_A YGR205W, hypothetical 3 96.2 0.0051 1.7E-07 54.6 5.3 27 36-62 28-54 (290)
270 2pze_A Cystic fibrosis transme 96.2 0.0025 8.7E-08 54.5 3.1 23 41-63 36-58 (229)
271 2eyu_A Twitching motility prot 96.2 0.0021 7.1E-08 56.3 2.6 23 40-62 26-48 (261)
272 3asz_A Uridine kinase; cytidin 96.2 0.0028 9.5E-08 53.0 3.2 25 38-62 5-29 (211)
273 2d2e_A SUFC protein; ABC-ATPas 96.2 0.0027 9.3E-08 55.1 3.2 22 41-62 31-52 (250)
274 1ji0_A ABC transporter; ATP bi 96.1 0.0028 9.5E-08 54.7 3.1 23 41-63 34-56 (240)
275 2olj_A Amino acid ABC transpor 96.1 0.0027 9.3E-08 55.6 3.1 23 41-63 52-74 (263)
276 2qi9_C Vitamin B12 import ATP- 96.1 0.0028 9.7E-08 55.0 3.1 23 41-63 28-50 (249)
277 2ghi_A Transport protein; mult 96.1 0.0031 1.1E-07 55.1 3.4 23 41-63 48-70 (260)
278 1rz3_A Hypothetical protein rb 96.1 0.0066 2.2E-07 50.5 5.3 37 25-61 7-44 (201)
279 1vpl_A ABC transporter, ATP-bi 96.1 0.0029 9.8E-08 55.2 3.1 23 41-63 43-65 (256)
280 2zu0_C Probable ATP-dependent 96.1 0.003 1E-07 55.4 3.2 22 41-62 48-69 (267)
281 2ixe_A Antigen peptide transpo 96.1 0.003 1E-07 55.5 3.1 23 41-63 47-69 (271)
282 1htw_A HI0065; nucleotide-bind 96.1 0.0027 9.1E-08 51.2 2.5 24 40-63 34-57 (158)
283 2qz4_A Paraplegin; AAA+, SPG7, 96.0 0.072 2.5E-06 45.5 11.8 24 39-62 39-62 (262)
284 2ihy_A ABC transporter, ATP-bi 96.0 0.0035 1.2E-07 55.4 3.3 23 41-63 49-71 (279)
285 2yz2_A Putative ABC transporte 96.0 0.0033 1.1E-07 55.1 3.1 23 41-63 35-57 (266)
286 2nq2_C Hypothetical ABC transp 96.0 0.0033 1.1E-07 54.7 3.1 23 41-63 33-55 (253)
287 2v9p_A Replication protein E1; 96.0 0.0031 1.1E-07 56.5 2.7 24 39-62 126-149 (305)
288 3nh6_A ATP-binding cassette SU 95.9 0.0025 8.6E-08 57.1 2.0 23 41-63 82-104 (306)
289 2j41_A Guanylate kinase; GMP, 95.9 0.0041 1.4E-07 51.6 3.1 25 39-63 6-30 (207)
290 3h4m_A Proteasome-activating n 95.9 0.071 2.4E-06 46.4 11.3 25 38-62 50-74 (285)
291 2gza_A Type IV secretion syste 95.9 0.0041 1.4E-07 57.0 3.2 24 40-63 176-199 (361)
292 2bbw_A Adenylate kinase 4, AK4 95.9 0.0053 1.8E-07 52.8 3.7 26 38-63 26-54 (246)
293 2pjz_A Hypothetical protein ST 95.9 0.0047 1.6E-07 54.1 3.3 23 41-63 32-54 (263)
294 3n70_A Transport activator; si 95.9 0.009 3.1E-07 46.9 4.8 37 26-62 11-47 (145)
295 2bdt_A BH3686; alpha-beta prot 95.9 0.0036 1.2E-07 51.3 2.5 21 41-61 4-24 (189)
296 2qor_A Guanylate kinase; phosp 95.8 0.0044 1.5E-07 51.6 3.0 24 39-62 12-35 (204)
297 3tqc_A Pantothenate kinase; bi 95.8 0.0092 3.1E-07 53.8 5.3 26 37-62 90-115 (321)
298 3kjh_A CO dehydrogenase/acetyl 95.8 0.022 7.6E-07 48.3 7.5 65 85-165 130-194 (254)
299 3jvv_A Twitching mobility prot 95.8 0.0035 1.2E-07 57.4 2.5 22 41-62 125-146 (356)
300 3b85_A Phosphate starvation-in 95.8 0.0028 9.7E-08 53.4 1.7 22 41-62 24-45 (208)
301 2i3b_A HCR-ntpase, human cance 95.8 0.0035 1.2E-07 52.0 2.2 22 41-62 3-24 (189)
302 2bbs_A Cystic fibrosis transme 95.8 0.0054 1.8E-07 54.5 3.5 23 41-63 66-88 (290)
303 1kag_A SKI, shikimate kinase I 95.8 0.0041 1.4E-07 50.1 2.5 23 40-62 5-27 (173)
304 2f1r_A Molybdopterin-guanine d 95.8 0.0022 7.6E-08 52.4 0.9 22 41-62 4-25 (171)
305 3uie_A Adenylyl-sulfate kinase 95.8 0.0068 2.3E-07 50.3 3.9 25 38-62 24-48 (200)
306 1gvn_B Zeta; postsegregational 95.7 0.0082 2.8E-07 53.1 4.5 42 20-61 11-55 (287)
307 2v1u_A Cell division control p 95.7 0.041 1.4E-06 49.8 9.4 40 23-62 26-67 (387)
308 3lnc_A Guanylate kinase, GMP k 95.7 0.0032 1.1E-07 53.5 1.8 23 40-62 28-51 (231)
309 2pt7_A CAG-ALFA; ATPase, prote 95.7 0.0042 1.4E-07 56.2 2.6 24 40-63 172-195 (330)
310 1u0l_A Probable GTPase ENGC; p 95.7 0.015 5.3E-07 51.7 6.1 64 88-167 64-128 (301)
311 4eun_A Thermoresistant glucoki 95.7 0.0045 1.5E-07 51.4 2.5 24 39-62 29-52 (200)
312 1np6_A Molybdopterin-guanine d 95.7 0.0046 1.6E-07 50.6 2.5 23 40-62 7-29 (174)
313 3lw7_A Adenylate kinase relate 95.7 0.0063 2.2E-07 48.6 3.2 20 40-59 2-21 (179)
314 3tui_C Methionine import ATP-b 95.7 0.0057 1.9E-07 56.1 3.2 23 41-63 56-78 (366)
315 3fvq_A Fe(3+) IONS import ATP- 95.6 0.006 2E-07 55.8 3.3 23 41-63 32-54 (359)
316 1cke_A CK, MSSA, protein (cyti 95.6 0.0054 1.8E-07 51.7 2.8 24 39-62 5-28 (227)
317 1knq_A Gluconate kinase; ALFA/ 95.6 0.0068 2.3E-07 48.9 3.3 23 39-61 8-30 (175)
318 1jbk_A CLPB protein; beta barr 95.6 0.014 4.9E-07 46.9 5.3 37 24-62 30-66 (195)
319 2oap_1 GSPE-2, type II secreti 95.6 0.0055 1.9E-07 58.8 3.1 23 40-62 261-283 (511)
320 1ly1_A Polynucleotide kinase; 95.6 0.0075 2.6E-07 48.6 3.5 22 40-61 3-24 (181)
321 4a74_A DNA repair and recombin 95.6 0.0052 1.8E-07 51.7 2.6 23 40-62 26-48 (231)
322 3aez_A Pantothenate kinase; tr 95.6 0.0062 2.1E-07 54.7 3.2 26 37-62 88-113 (312)
323 2qt1_A Nicotinamide riboside k 95.6 0.0087 3E-07 49.8 3.9 26 37-62 19-44 (207)
324 2if2_A Dephospho-COA kinase; a 95.6 0.006 2E-07 50.6 2.8 22 40-61 2-23 (204)
325 4b4t_L 26S protease subunit RP 95.6 0.06 2E-06 50.5 9.9 69 39-131 215-285 (437)
326 1z47_A CYSA, putative ABC-tran 95.6 0.0065 2.2E-07 55.5 3.2 23 41-63 43-65 (355)
327 2ewv_A Twitching motility prot 95.5 0.0056 1.9E-07 56.3 2.7 23 40-62 137-159 (372)
328 1p9r_A General secretion pathw 95.5 0.0053 1.8E-07 57.4 2.5 23 40-62 168-190 (418)
329 2jeo_A Uridine-cytidine kinase 95.5 0.0075 2.6E-07 51.8 3.3 25 38-62 24-48 (245)
330 3bos_A Putative DNA replicatio 95.5 0.017 5.8E-07 48.6 5.5 25 38-62 51-75 (242)
331 3rlf_A Maltose/maltodextrin im 95.5 0.0071 2.4E-07 55.8 3.2 23 41-63 31-53 (381)
332 3ec2_A DNA replication protein 95.5 0.014 4.8E-07 47.3 4.7 24 39-62 38-61 (180)
333 2yyz_A Sugar ABC transporter, 95.5 0.0072 2.5E-07 55.3 3.2 23 41-63 31-53 (359)
334 3fb4_A Adenylate kinase; psych 95.5 0.0079 2.7E-07 50.3 3.3 21 40-60 1-21 (216)
335 2it1_A 362AA long hypothetical 95.5 0.0073 2.5E-07 55.3 3.2 23 41-63 31-53 (362)
336 3kb2_A SPBC2 prophage-derived 95.4 0.0083 2.8E-07 48.0 3.2 21 41-61 3-23 (173)
337 1jjv_A Dephospho-COA kinase; P 95.4 0.0092 3.2E-07 49.6 3.5 22 40-61 3-24 (206)
338 1lw7_A Transcriptional regulat 95.4 0.0051 1.8E-07 56.3 2.1 24 40-63 171-194 (365)
339 1g29_1 MALK, maltose transport 95.4 0.0077 2.6E-07 55.4 3.2 23 41-63 31-53 (372)
340 3qf7_A RAD50; ABC-ATPase, ATPa 95.4 0.032 1.1E-06 51.0 7.4 21 39-60 24-44 (365)
341 1uf9_A TT1252 protein; P-loop, 95.4 0.011 3.7E-07 48.7 3.8 26 37-62 6-31 (203)
342 1v43_A Sugar-binding transport 95.4 0.0081 2.8E-07 55.3 3.2 23 41-63 39-61 (372)
343 3dl0_A Adenylate kinase; phosp 95.4 0.0092 3.1E-07 50.0 3.3 22 40-61 1-22 (216)
344 1qhx_A CPT, protein (chloramph 95.3 0.0099 3.4E-07 48.0 3.3 23 40-62 4-26 (178)
345 3h2y_A GTPase family protein; 95.3 0.11 3.8E-06 47.5 10.8 55 105-169 57-111 (368)
346 2ehv_A Hypothetical protein PH 95.3 0.0089 3.1E-07 50.9 3.1 20 41-60 32-51 (251)
347 1kht_A Adenylate kinase; phosp 95.3 0.01 3.5E-07 48.3 3.3 23 39-61 3-25 (192)
348 2jaq_A Deoxyguanosine kinase; 95.3 0.0098 3.4E-07 48.9 3.2 22 40-61 1-22 (205)
349 2rhm_A Putative kinase; P-loop 95.3 0.013 4.3E-07 47.9 3.8 23 39-61 5-27 (193)
350 3gd7_A Fusion complex of cysti 95.3 0.0097 3.3E-07 55.1 3.3 23 41-63 49-71 (390)
351 3cwq_A Para family chromosome 95.3 0.023 7.9E-07 47.5 5.4 66 86-167 67-133 (209)
352 4b4t_I 26S protease regulatory 95.2 0.099 3.4E-06 48.8 10.1 24 39-62 216-239 (437)
353 3end_A Light-independent proto 95.2 0.05 1.7E-06 48.1 7.9 69 86-166 156-225 (307)
354 3cm0_A Adenylate kinase; ATP-b 95.2 0.012 4.2E-07 47.8 3.5 22 39-60 4-25 (186)
355 3t61_A Gluconokinase; PSI-biol 95.2 0.0099 3.4E-07 49.2 2.9 23 39-61 18-40 (202)
356 3d31_A Sulfate/molybdate ABC t 95.2 0.0068 2.3E-07 55.3 1.9 23 41-63 28-50 (348)
357 2p5t_B PEZT; postsegregational 95.1 0.013 4.6E-07 50.5 3.8 26 37-62 30-55 (253)
358 1zcb_A G alpha I/13; GTP-bindi 95.1 0.013 4.4E-07 53.7 3.7 24 36-59 30-53 (362)
359 1sq5_A Pantothenate kinase; P- 95.1 0.011 3.9E-07 52.7 3.3 25 38-62 79-103 (308)
360 3co5_A Putative two-component 95.1 0.011 3.9E-07 46.3 2.9 25 38-62 26-50 (143)
361 2cdn_A Adenylate kinase; phosp 95.1 0.015 5E-07 48.2 3.7 25 37-61 18-42 (201)
362 3vaa_A Shikimate kinase, SK; s 95.1 0.013 4.3E-07 48.6 3.3 22 40-61 26-47 (199)
363 1tev_A UMP-CMP kinase; ploop, 95.1 0.014 4.8E-07 47.6 3.5 23 39-61 3-25 (196)
364 4e22_A Cytidylate kinase; P-lo 95.1 0.015 5.1E-07 50.3 3.8 23 38-60 26-48 (252)
365 4b4t_J 26S protease regulatory 95.1 0.11 3.8E-06 48.1 9.8 24 39-62 182-205 (405)
366 1nks_A Adenylate kinase; therm 95.1 0.014 4.8E-07 47.5 3.4 21 41-61 3-23 (194)
367 1xwi_A SKD1 protein; VPS4B, AA 95.0 0.39 1.3E-05 42.8 13.3 24 39-62 45-68 (322)
368 2p65_A Hypothetical protein PF 95.0 0.021 7.1E-07 45.8 4.4 37 24-62 30-66 (187)
369 1y63_A LMAJ004144AAA protein; 95.0 0.016 5.3E-07 47.4 3.6 25 38-62 9-33 (184)
370 2vp4_A Deoxynucleoside kinase; 95.0 0.0098 3.4E-07 50.6 2.4 25 38-62 19-43 (230)
371 1e4v_A Adenylate kinase; trans 95.0 0.015 5E-07 48.7 3.4 22 40-61 1-22 (214)
372 2pt5_A Shikimate kinase, SK; a 95.0 0.014 4.7E-07 46.6 3.2 22 40-61 1-22 (168)
373 3kta_A Chromosome segregation 95.0 0.014 4.7E-07 47.4 3.2 21 41-61 28-48 (182)
374 4b4t_K 26S protease regulatory 95.0 0.086 2.9E-06 49.3 8.9 24 39-62 206-229 (428)
375 1oxx_K GLCV, glucose, ABC tran 95.0 0.0066 2.3E-07 55.5 1.2 23 41-63 33-55 (353)
376 2plr_A DTMP kinase, probable t 94.9 0.018 6E-07 47.7 3.7 23 39-61 4-26 (213)
377 3trf_A Shikimate kinase, SK; a 94.9 0.016 5.4E-07 47.1 3.2 23 39-61 5-27 (185)
378 2x8a_A Nuclear valosin-contain 94.9 0.018 6.1E-07 50.6 3.7 21 42-62 47-67 (274)
379 2v54_A DTMP kinase, thymidylat 94.9 0.018 6.2E-07 47.4 3.6 24 39-62 4-27 (204)
380 3b9p_A CG5977-PA, isoform A; A 94.8 0.15 5.1E-06 44.6 9.8 25 38-62 53-77 (297)
381 1nn5_A Similar to deoxythymidy 94.8 0.02 6.7E-07 47.6 3.7 24 38-61 8-31 (215)
382 2wwf_A Thymidilate kinase, put 94.8 0.017 6E-07 47.9 3.4 24 38-61 9-32 (212)
383 2pez_A Bifunctional 3'-phospho 94.8 0.019 6.7E-07 46.4 3.6 24 38-61 4-27 (179)
384 2c95_A Adenylate kinase 1; tra 94.8 0.021 7E-07 46.7 3.7 24 38-61 8-31 (196)
385 2chg_A Replication factor C sm 94.7 0.04 1.4E-06 45.3 5.5 22 41-62 40-61 (226)
386 1zd8_A GTP:AMP phosphotransfer 94.7 0.019 6.6E-07 48.5 3.5 23 39-61 7-29 (227)
387 1aky_A Adenylate kinase; ATP:A 94.7 0.02 6.8E-07 48.1 3.6 24 38-61 3-26 (220)
388 1svm_A Large T antigen; AAA+ f 94.7 0.037 1.3E-06 50.9 5.6 25 38-62 168-192 (377)
389 3b60_A Lipid A export ATP-bind 94.7 0.017 5.8E-07 56.3 3.4 23 41-63 371-393 (582)
390 1ixz_A ATP-dependent metallopr 94.7 0.014 4.7E-07 50.2 2.5 22 41-62 51-72 (254)
391 1zak_A Adenylate kinase; ATP:A 94.7 0.02 6.8E-07 48.2 3.4 24 38-61 4-27 (222)
392 1nij_A Hypothetical protein YJ 94.7 0.011 3.6E-07 53.2 1.8 23 41-63 6-28 (318)
393 1yqt_A RNAse L inhibitor; ATP- 94.6 0.018 6E-07 55.7 3.4 23 41-63 49-71 (538)
394 1uj2_A Uridine-cytidine kinase 94.6 0.021 7.2E-07 49.2 3.6 24 38-61 21-44 (252)
395 1vht_A Dephospho-COA kinase; s 94.6 0.021 7.3E-07 47.8 3.5 23 39-61 4-26 (218)
396 1lv7_A FTSH; alpha/beta domain 94.6 0.031 1.1E-06 48.1 4.6 24 39-62 45-68 (257)
397 2yvu_A Probable adenylyl-sulfa 94.6 0.026 8.9E-07 46.0 3.9 25 38-62 12-36 (186)
398 2w0m_A SSO2452; RECA, SSPF, un 94.6 0.015 5.2E-07 48.7 2.5 21 41-61 25-45 (235)
399 2pbr_A DTMP kinase, thymidylat 94.5 0.021 7.3E-07 46.5 3.2 22 40-61 1-22 (195)
400 3b5x_A Lipid A export ATP-bind 94.5 0.018 6.3E-07 56.0 3.2 23 41-63 371-393 (582)
401 3pfi_A Holliday junction ATP-d 94.5 0.042 1.4E-06 49.2 5.4 40 23-62 39-78 (338)
402 1in4_A RUVB, holliday junction 94.5 0.033 1.1E-06 50.1 4.7 23 40-62 52-74 (334)
403 2bwj_A Adenylate kinase 5; pho 94.5 0.024 8E-07 46.5 3.4 23 39-61 12-34 (199)
404 1ukz_A Uridylate kinase; trans 94.5 0.029 9.8E-07 46.3 3.9 24 38-61 14-37 (203)
405 2z0h_A DTMP kinase, thymidylat 94.5 0.023 7.8E-07 46.5 3.3 21 41-61 2-22 (197)
406 2npi_A Protein CLP1; CLP1-PCF1 94.5 0.03 1E-06 53.0 4.4 25 39-63 138-162 (460)
407 3iij_A Coilin-interacting nucl 94.4 0.023 8E-07 46.0 3.2 22 39-60 11-32 (180)
408 1cr0_A DNA primase/helicase; R 94.4 0.018 6E-07 50.8 2.6 22 41-62 37-58 (296)
409 3ozx_A RNAse L inhibitor; ATP 94.4 0.02 6.7E-07 55.3 3.1 23 41-63 27-49 (538)
410 3u61_B DNA polymerase accessor 94.4 0.69 2.4E-05 40.8 13.2 22 41-62 50-71 (324)
411 2xb4_A Adenylate kinase; ATP-b 94.4 0.023 8E-07 48.0 3.2 22 40-61 1-22 (223)
412 1via_A Shikimate kinase; struc 94.4 0.021 7.1E-07 46.1 2.7 21 41-61 6-26 (175)
413 2ze6_A Isopentenyl transferase 94.3 0.023 7.8E-07 49.2 3.1 21 41-61 3-23 (253)
414 4b4t_H 26S protease regulatory 94.3 0.21 7.1E-06 47.1 9.7 25 38-62 242-266 (467)
415 1qf9_A UMP/CMP kinase, protein 94.3 0.029 9.9E-07 45.5 3.5 23 39-61 6-28 (194)
416 2obl_A ESCN; ATPase, hydrolase 94.3 0.02 7E-07 52.1 2.8 24 40-63 72-95 (347)
417 3j16_B RLI1P; ribosome recycli 94.3 0.022 7.5E-07 55.8 3.2 23 41-63 105-127 (608)
418 2bjv_A PSP operon transcriptio 94.3 0.042 1.4E-06 47.4 4.7 25 38-62 28-52 (265)
419 3euj_A Chromosome partition pr 94.2 0.018 6.3E-07 54.7 2.5 23 40-62 30-52 (483)
420 1xjc_A MOBB protein homolog; s 94.2 0.027 9.1E-07 45.8 3.1 23 40-62 5-27 (169)
421 3r20_A Cytidylate kinase; stru 94.2 0.028 9.5E-07 48.2 3.3 24 38-61 8-31 (233)
422 3qf4_B Uncharacterized ABC tra 94.2 0.017 5.9E-07 56.4 2.3 23 41-63 383-405 (598)
423 1iy2_A ATP-dependent metallopr 94.2 0.02 6.8E-07 50.0 2.5 22 41-62 75-96 (278)
424 4fcw_A Chaperone protein CLPB; 94.2 0.03 1E-06 49.3 3.7 23 40-62 48-70 (311)
425 1gtv_A TMK, thymidylate kinase 94.2 0.012 4.1E-07 49.0 0.9 21 41-61 2-22 (214)
426 3bk7_A ABC transporter ATP-bin 94.2 0.025 8.6E-07 55.4 3.3 23 41-63 119-141 (607)
427 2yl4_A ATP-binding cassette SU 94.2 0.017 5.8E-07 56.4 2.1 23 41-63 372-394 (595)
428 3qf4_A ABC transporter, ATP-bi 94.1 0.018 6.3E-07 56.1 2.3 23 41-63 371-393 (587)
429 4a82_A Cystic fibrosis transme 94.1 0.016 5.4E-07 56.5 1.8 23 41-63 369-391 (578)
430 2vli_A Antibiotic resistance p 94.1 0.019 6.5E-07 46.4 2.0 23 39-61 5-27 (183)
431 3vfd_A Spastin; ATPase, microt 94.1 0.39 1.4E-05 43.9 11.2 24 39-62 148-171 (389)
432 1f2t_A RAD50 ABC-ATPase; DNA d 94.1 0.026 9E-07 44.7 2.8 20 40-60 25-44 (149)
433 2qby_A CDC6 homolog 1, cell di 94.1 0.049 1.7E-06 49.2 5.0 39 24-62 28-68 (386)
434 1jr3_A DNA polymerase III subu 94.1 0.076 2.6E-06 47.9 6.3 22 40-61 39-60 (373)
435 1sxj_E Activator 1 40 kDa subu 94.1 0.031 1.1E-06 50.3 3.6 20 42-61 39-58 (354)
436 3sr0_A Adenylate kinase; phosp 94.1 0.031 1.1E-06 46.9 3.3 22 40-61 1-22 (206)
437 2iyv_A Shikimate kinase, SK; t 94.0 0.027 9.1E-07 45.7 2.8 22 40-61 3-24 (184)
438 1puj_A YLQF, conserved hypothe 94.0 0.24 8.1E-06 43.5 9.1 60 93-168 5-64 (282)
439 1ak2_A Adenylate kinase isoenz 94.0 0.035 1.2E-06 47.1 3.6 24 38-61 15-38 (233)
440 2w58_A DNAI, primosome compone 94.0 0.073 2.5E-06 43.8 5.5 23 40-62 55-77 (202)
441 2cvh_A DNA repair and recombin 94.0 0.024 8.2E-07 47.2 2.5 22 40-61 21-42 (220)
442 3be4_A Adenylate kinase; malar 94.0 0.033 1.1E-06 46.8 3.3 23 39-61 5-27 (217)
443 2f6r_A COA synthase, bifunctio 94.0 0.038 1.3E-06 48.6 3.9 23 38-60 74-96 (281)
444 1njg_A DNA polymerase III subu 94.0 0.062 2.1E-06 44.7 5.1 23 40-62 46-68 (250)
445 4b4t_M 26S protease regulatory 94.0 0.13 4.3E-06 48.2 7.5 24 39-62 215-238 (434)
446 3ozx_A RNAse L inhibitor; ATP 93.9 0.028 9.5E-07 54.3 3.1 23 41-63 296-318 (538)
447 1e6c_A Shikimate kinase; phosp 93.9 0.03 1E-06 44.7 2.9 21 41-61 4-24 (173)
448 2dpy_A FLII, flagellum-specifi 93.9 0.026 8.9E-07 53.0 2.8 24 40-63 158-181 (438)
449 3a4m_A L-seryl-tRNA(SEC) kinas 93.9 0.037 1.3E-06 48.0 3.6 23 39-61 4-26 (260)
450 4f4c_A Multidrug resistance pr 93.9 0.017 5.9E-07 61.6 1.6 22 41-62 1107-1128(1321)
451 2grj_A Dephospho-COA kinase; T 93.9 0.036 1.2E-06 45.9 3.3 24 38-61 11-34 (192)
452 2zan_A Vacuolar protein sortin 93.8 0.42 1.4E-05 44.7 10.9 24 39-62 167-190 (444)
453 3nwj_A ATSK2; P loop, shikimat 93.8 0.026 8.8E-07 48.9 2.3 22 40-61 49-70 (250)
454 1zuh_A Shikimate kinase; alpha 93.7 0.038 1.3E-06 44.1 3.2 22 40-61 8-29 (168)
455 3uk6_A RUVB-like 2; hexameric 93.7 0.094 3.2E-06 47.3 6.2 40 23-62 54-93 (368)
456 1d2n_A N-ethylmaleimide-sensit 93.7 0.065 2.2E-06 46.4 4.9 35 28-62 52-87 (272)
457 1hqc_A RUVB; extended AAA-ATPa 93.7 0.049 1.7E-06 48.3 4.1 41 21-61 20-60 (324)
458 1yqt_A RNAse L inhibitor; ATP- 93.7 0.037 1.3E-06 53.4 3.4 23 41-63 314-336 (538)
459 1n0w_A DNA repair protein RAD5 93.7 0.03 1E-06 47.4 2.5 23 40-62 25-47 (243)
460 2yv5_A YJEQ protein; hydrolase 93.6 0.17 5.8E-06 44.9 7.5 46 118-168 78-124 (302)
461 3ec1_A YQEH GTPase; atnos1, at 93.6 0.19 6.7E-06 45.9 8.1 44 118-169 70-113 (369)
462 3syl_A Protein CBBX; photosynt 93.6 0.1 3.4E-06 45.9 6.0 25 38-62 66-90 (309)
463 1m7g_A Adenylylsulfate kinase; 93.5 0.05 1.7E-06 45.3 3.6 25 38-62 24-48 (211)
464 3bk7_A ABC transporter ATP-bin 93.5 0.04 1.4E-06 53.9 3.4 23 41-63 384-406 (607)
465 1ojl_A Transcriptional regulat 93.5 0.068 2.3E-06 47.5 4.7 36 26-61 12-47 (304)
466 3j16_B RLI1P; ribosome recycli 93.3 0.041 1.4E-06 53.8 3.1 22 42-63 381-402 (608)
467 2qmh_A HPR kinase/phosphorylas 93.2 0.047 1.6E-06 45.6 2.8 24 39-62 34-57 (205)
468 1ltq_A Polynucleotide kinase; 93.2 0.055 1.9E-06 47.6 3.5 22 40-61 3-24 (301)
469 4f4c_A Multidrug resistance pr 93.1 0.047 1.6E-06 58.3 3.4 23 41-63 446-468 (1321)
470 2qby_B CDC6 homolog 3, cell di 93.0 0.13 4.3E-06 46.6 5.8 25 38-62 44-68 (384)
471 1cip_A Protein (guanine nucleo 93.0 0.058 2E-06 49.2 3.4 25 36-60 29-53 (353)
472 3cr8_A Sulfate adenylyltranfer 92.9 0.047 1.6E-06 52.8 2.9 25 38-62 368-392 (552)
473 1nlf_A Regulatory protein REPA 92.9 0.046 1.6E-06 47.7 2.6 21 41-61 32-52 (279)
474 2c9o_A RUVB-like 1; hexameric 92.9 0.14 4.7E-06 48.2 6.1 42 21-62 45-86 (456)
475 4eaq_A DTMP kinase, thymidylat 92.8 0.078 2.7E-06 45.1 3.8 25 38-62 25-49 (229)
476 1l8q_A Chromosomal replication 92.8 0.15 5E-06 45.4 5.8 24 39-62 37-60 (324)
477 1sxj_C Activator 1 40 kDa subu 92.7 0.095 3.3E-06 47.0 4.5 21 42-62 49-69 (340)
478 1q3t_A Cytidylate kinase; nucl 92.7 0.081 2.8E-06 44.9 3.7 24 38-61 15-38 (236)
479 3la6_A Tyrosine-protein kinase 92.6 3.3 0.00011 36.1 14.3 64 88-166 203-266 (286)
480 3g5u_A MCG1178, multidrug resi 92.5 0.053 1.8E-06 57.8 2.8 23 41-63 418-440 (1284)
481 3te6_A Regulatory protein SIR3 92.5 0.099 3.4E-06 46.9 4.2 27 36-62 42-68 (318)
482 2iw3_A Elongation factor 3A; a 92.5 0.038 1.3E-06 56.8 1.6 23 41-63 701-723 (986)
483 3eie_A Vacuolar protein sortin 92.5 0.11 3.7E-06 46.4 4.5 24 39-62 51-74 (322)
484 3ake_A Cytidylate kinase; CMP 92.5 0.077 2.6E-06 43.6 3.2 21 41-61 4-24 (208)
485 2xtz_A Guanine nucleotide-bind 92.4 0.07 2.4E-06 48.6 3.2 25 36-60 6-30 (354)
486 3qks_A DNA double-strand break 92.4 0.073 2.5E-06 44.3 3.1 19 42-60 26-44 (203)
487 1ko7_A HPR kinase/phosphatase; 92.4 0.067 2.3E-06 47.9 2.9 25 39-63 144-168 (314)
488 3a8t_A Adenylate isopentenyltr 92.4 0.1 3.5E-06 47.2 4.1 57 39-97 40-105 (339)
489 3hws_A ATP-dependent CLP prote 92.3 0.098 3.4E-06 47.4 4.1 25 38-62 50-74 (363)
490 3upu_A ATP-dependent DNA helic 92.3 0.21 7.2E-06 46.9 6.4 46 12-60 21-66 (459)
491 1tue_A Replication protein E1; 92.2 0.13 4.6E-06 43.1 4.4 22 40-61 59-80 (212)
492 1azs_C GS-alpha; complex (lyas 92.2 0.094 3.2E-06 48.6 3.8 27 34-60 35-61 (402)
493 2ocp_A DGK, deoxyguanosine kin 92.2 0.1 3.4E-06 44.4 3.8 24 39-62 2-25 (241)
494 1bif_A 6-phosphofructo-2-kinas 92.1 0.09 3.1E-06 49.7 3.7 25 38-62 38-62 (469)
495 2ius_A DNA translocase FTSK; n 92.1 0.075 2.6E-06 50.8 3.1 21 41-61 169-189 (512)
496 3d3q_A TRNA delta(2)-isopenten 92.1 0.08 2.7E-06 47.9 3.1 23 40-62 8-30 (340)
497 1sxj_D Activator 1 41 kDa subu 92.0 0.14 5E-06 45.6 4.8 21 42-62 61-81 (353)
498 2h92_A Cytidylate kinase; ross 92.0 0.081 2.8E-06 44.1 2.9 23 39-61 3-25 (219)
499 3crm_A TRNA delta(2)-isopenten 92.0 0.096 3.3E-06 47.1 3.5 23 40-62 6-28 (323)
500 1qhl_A Protein (cell division 92.0 0.019 6.6E-07 49.0 -1.1 21 42-62 30-50 (227)
No 1
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=100.00 E-value=1.2e-37 Score=278.76 Aligned_cols=261 Identities=70% Similarity=1.094 Sum_probs=224.7
Q ss_pred ccch--hhhhccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEE
Q 021699 3 MASQ--VIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV 80 (309)
Q Consensus 3 ~~~~--~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~ 80 (309)
|||| ++++|.|+.++|.++++.+.+++.++...+..+++|+++|.+|+|||||+|+|++.....+++.+++|......
T Consensus 1 m~~~~~~~~~~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~ 80 (270)
T 1h65_A 1 MASQQQTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMV 80 (270)
T ss_dssp -------CEECGGGGGSCHHHHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEE
T ss_pred CCcchhhhhhhcchhhccHHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEE
Confidence 7887 78999999999999999999999999988888899999999999999999999999876777888888888877
Q ss_pred EeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEE
Q 021699 81 SRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIV 160 (309)
Q Consensus 81 ~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV 160 (309)
.....+..+.||||||+.+.....+.+.+.+.+++...++|+||||+++|..+++..+..+++.+.+.++...+.|+++|
T Consensus 81 ~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV 160 (270)
T 1h65_A 81 SRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVA 160 (270)
T ss_dssp EEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred EEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEE
Confidence 88888999999999999887777777777777777667899999999998767888888999999999998888899999
Q ss_pred EecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHH
Q 021699 161 LTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTI 240 (309)
Q Consensus 161 ~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i 240 (309)
+||+|+.++++.+++++.++..+.+++.++....+.+. ++...+|+.++++.+.|.++...+++++....|.+.|++.+
T Consensus 161 ~nK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l 239 (270)
T 1h65_A 161 LTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKD-AQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTI 239 (270)
T ss_dssp EECCSCCCGGGCCHHHHHHHHHHHHHHHHHHHTTCCTT-SGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHH
T ss_pred EECcccCCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhh-hhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHH
Confidence 99999987777899999988888888888765444322 22345899999999999999988999999999999999999
Q ss_pred HHHHhcCCCcceeccccccCCCCC
Q 021699 241 TEVVLNGSKALLVDKKLVEGPNPN 264 (309)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~p~ 264 (309)
...+.++++.++.++++++++.|.
T Consensus 240 ~~~~~~~~~~l~~d~~~~~~~~~~ 263 (270)
T 1h65_A 240 TEVALNKSESIFVDKNLIDKLAAA 263 (270)
T ss_dssp HHHHTSSSCCEECCHHHHHHHHHC
T ss_pred HHHHhcCCCceecCHHHhcCCCcc
Confidence 999999999999999988876554
No 2
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=100.00 E-value=1.3e-37 Score=277.36 Aligned_cols=257 Identities=63% Similarity=1.023 Sum_probs=218.1
Q ss_pred ccchhhhhccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEe
Q 021699 3 MASQVIREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR 82 (309)
Q Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~ 82 (309)
|++ +.++|.|++++|+++++.+.++++++...+.++++|+++|.+|+|||||+|+|++...+.+++.+++|........
T Consensus 1 ~~~-~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~ 79 (262)
T 3def_A 1 MGS-LVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 79 (262)
T ss_dssp ------CBCHHHHTSCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEE
T ss_pred CCc-chhhHHHHhhccHHHHHHHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEE
Confidence 667 7899999999999999999999999999888899999999999999999999999987777888888888888888
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEe
Q 021699 83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 162 (309)
Q Consensus 83 ~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~t 162 (309)
..++..+.||||||+.+.....+.+.+.+.+++...++|+++||+++|..+++..+..+++.+.+.++...++|+++|+|
T Consensus 80 ~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~n 159 (262)
T 3def_A 80 TMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLT 159 (262)
T ss_dssp EETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred EECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEe
Confidence 89999999999999998888888888888888877899999999999877788888899999999999888889999999
Q ss_pred cccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHH
Q 021699 163 HAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITE 242 (309)
Q Consensus 163 k~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~ 242 (309)
|+|+.++++.+++++++...+.+++.++++.+..........+|++++++.+.|..|..+++++|+..+|++.|++.|..
T Consensus 160 K~Dl~~~~~~~~e~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~pv~~ve~~~~~~~n~~g~~~lp~~~~w~~~~~~~~~~ 239 (262)
T 3def_A 160 HAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITD 239 (262)
T ss_dssp CTTCCCSTTCCHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHCCEEEECCCCTTCCBCTTSCBBCTTSCBSCC-CHHHHHH
T ss_pred CcccCCCCCccHHHHHHhhhHHHHHHHHHHhCccccccccccCCEEEEeCCCCCCCCCCCCeECCCCCeeHHHHHHHHHH
Confidence 99998778889999998877888888877655443222233489999999999999999999999999999999999999
Q ss_pred HHhcCCCcceeccccccC
Q 021699 243 VVLNGSKALLVDKKLVEG 260 (309)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~ 260 (309)
++.+..+++.++++..++
T Consensus 240 ~~~~~~~~~~~~~~~~~~ 257 (262)
T 3def_A 240 VATNQRKAIHVDAAALEH 257 (262)
T ss_dssp HHTSCSCCEEC-------
T ss_pred HHhCCCCceeccHHHhhh
Confidence 999999999999876544
No 3
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.90 E-value=2.6e-24 Score=192.55 Aligned_cols=236 Identities=18% Similarity=0.244 Sum_probs=141.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccC-------CCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcH---
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVST-------FQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNY--- 105 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~-------~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~--- 105 (309)
..++|+|+|.+|+|||||+|+|++.+.+.... .++.+..........+|. ++.||||||+++.....+
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 46999999999999999999999988755443 233344444555555664 899999999976533221
Q ss_pred HHH--------HHHHH-------hhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021699 106 HAI--------QLIKR-------FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 106 ~~~--------~~i~~-------~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
... ..+.. .+.+.++|+++|++....+.+...+..+++.+.. ..|+++|+||+|+..+.
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCCHH
Confidence 111 11111 1224568999999765555678888888887765 27999999999986321
Q ss_pred CCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCc
Q 021699 171 RLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKA 250 (309)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~ 250 (309)
+ .+.+ .+.+++.+... +++++.+++. ++.+.+. -...|.+.+++++.++...
T Consensus 161 e--~~~~----~~~i~~~l~~~-----------~i~v~~~sa~----~~~~~~~-------l~~~l~~~~p~~vv~s~~~ 212 (274)
T 3t5d_A 161 E--CQQF----KKQIMKEIQEH-----------KIKIYEFPET----DDEEENK-------LVKKIKDRLPLAVVGSNTI 212 (274)
T ss_dssp H--HHHH----HHHHHHHHHHT-----------TCCCCCC----------------------CHHHHHTCSEECCCCCCC
T ss_pred H--HHHH----HHHHHHHHHHc-----------CCeEEcCCCC----CChhHHH-------HHHHHhcCCCcEEEEeeeE
Confidence 1 1111 23344444322 2455444331 2222111 1345556667777777777
Q ss_pred ceeccccccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhhhcccchh--hhhhcc
Q 021699 251 LLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVW--ARASRR 308 (309)
Q Consensus 251 ~~~~~~~~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 308 (309)
+...+..+++|. |+||...++...++.|..+...+.+..-.|++..-...+ .||.++
T Consensus 213 ~~~~~~~~~~r~-y~wg~~~ve~~~~~df~~lr~~l~~~~~~~l~~~t~~~~ye~yr~~~ 271 (274)
T 3t5d_A 213 IEVNGKRVRGRQ-YPWGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRK 271 (274)
T ss_dssp --------CEEE-CSSCEEESSCTTTCSHHHHHHTTTTTTHHHHHHHHHHTHHHHHHHHH
T ss_pred EeeCCeEEEeee-cccceEEecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788889998 999999999999999999777788787778877654332 356554
No 4
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=1.4e-21 Score=171.02 Aligned_cols=186 Identities=25% Similarity=0.255 Sum_probs=122.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCC--CCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ--SEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~--~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+|+|.+|+|||||+|+|+|..... +..+ ++|..+......+++..+.||||||+.+......+..+.+.++
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFH-SGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSC-C-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCc-cCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 357999999999999999999999987633 3333 5677788888888999999999999988766665555555554
Q ss_pred h--hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccc
Q 021699 115 L--LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPS 192 (309)
Q Consensus 115 ~--~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~ 192 (309)
+ ..+++|++|+|++++ +++..+..++..+.+.++...++|+++|+||+|+.+.. ..++++....+.++++++.+
T Consensus 106 ~~~~~~~~~~~l~v~d~~--~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLG--RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDT--NLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHTTTCCSEEEEEEETT--CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--------------CHHHHHHHHHH
T ss_pred HHhcCCCCcEEEEEeeCC--CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcc--cHHHHHHhchHHHHHHHHHc
Confidence 4 346899999997765 57778889999999888876668999999999986433 46667665556777777765
Q ss_pred ccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCC
Q 021699 193 TWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGS 248 (309)
Q Consensus 193 ~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~ 248 (309)
.. .+++.++.... .. ....+.+|++.+...+...+
T Consensus 182 ~~-----------~~~~~~~~~~~--~~--------~~~~v~~ll~~i~~~~~~~~ 216 (239)
T 3lxx_A 182 GD-----------RYCALNNKATG--AE--------QEAQRAQLLGLIQRVVRENK 216 (239)
T ss_dssp SS-----------SEEECCTTCCH--HH--------HHHHHHHHHHHHHHHHHHCT
T ss_pred CC-----------EEEEEECCCCc--cc--------cHHHHHHHHHHHHHHHHHcC
Confidence 32 33333332100 00 01137888888888776543
No 5
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=3.2e-22 Score=190.33 Aligned_cols=208 Identities=22% Similarity=0.290 Sum_probs=135.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~--~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|+|++.+...+++.+++|.+.....+.++|..+.||||||+.+.....+ +.+..++...
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 46999999999999999999999998767888889998887777888999999999999976443211 1222222211
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
....+|++++|++++. ..+..+..++..+.+. + +++++|+||+|+.+.+..+.+++. +.+.+.+...
T Consensus 254 ~~~~ad~~llv~D~~~-~~s~~~~~~~~~~~~~-~----~~iiiv~NK~Dl~~~~~~~~~~~~----~~~~~~l~~~--- 320 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEE-GIIEQDKRIAGYAHEA-G----KAVVIVVNKWDAVDKDESTMKEFE----ENIRDHFQFL--- 320 (436)
T ss_dssp HHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSCCCTTHHHHHH----HHHHHHCGGG---
T ss_pred HHHhCCEEEEEEcCCc-CCcHHHHHHHHHHHHc-C----CcEEEEEECccCCCcchHHHHHHH----HHHHHhcccC---
Confidence 2247899999988754 4667777777766542 2 799999999999765544344332 2333333211
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCcc-------eeccccccCCCCCCCCc
Q 021699 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKAL-------LVDKKLVEGPNPNEKGK 268 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~-------~~~~~~~~~~~p~~~g~ 268 (309)
..+|++.+|+. ++.+ +.+|++.+.....+..+.+ +++.+...+++|...|+
T Consensus 321 -------~~~~~~~~SA~----tg~~-----------v~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~~~~~~pp~~~~~ 378 (436)
T 2hjg_A 321 -------DYAPILFMSAL----TKKR-----------IHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGS 378 (436)
T ss_dssp -------TTSCEEECCTT----TCTT-----------GGGHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHSCCCEETTE
T ss_pred -------CCCCEEEEecc----cCCC-----------HHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCccCCc
Confidence 23788888874 4443 4555555554444322211 45567777899999999
Q ss_pred ccccHHHHHHHHH
Q 021699 269 ILIPFIFAFQYFF 281 (309)
Q Consensus 269 ~~~~l~~~~q~~~ 281 (309)
++ +++|++|+..
T Consensus 379 ~~-~i~y~~q~~~ 390 (436)
T 2hjg_A 379 RL-KIYYATQVSV 390 (436)
T ss_dssp EC-CEEEEEEEET
T ss_pred ce-eEEeEecCCC
Confidence 96 9999999754
No 6
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.86 E-value=5.8e-21 Score=168.29 Aligned_cols=187 Identities=22% Similarity=0.266 Sum_probs=129.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCC-CCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc-HHHHHHHHHh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ-SEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN-YHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~-~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~-~~~~~~i~~~ 114 (309)
..+++|+++|.+|+|||||+|+|+|...+..+..+ ++|..+.......++..+.||||||+.+..... ++....+.++
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 35799999999999999999999999876554333 477788888888899999999999997654332 2233333333
Q ss_pred h--hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCcccc-CcEEEEEecccCCCCCCCCHHHHHHhh-hHHHHHhhc
Q 021699 115 L--LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIW-KRALIVLTHAQLSLPDRLDYEVFCSKR-SEALLKFVS 190 (309)
Q Consensus 115 ~--~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~-~~~iiV~tk~D~~~~~~~~~~~~~~~~-~~~l~~~i~ 190 (309)
+ ..+++|++|+|++++ +++..+..+++.+.+.+|...+ .++|+|.||+|+.. .+.++++... .+.+++++.
T Consensus 99 ~~~~~~~~d~il~V~d~~--~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~---~~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLG--RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG---GSLHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHTTCCSEEEEEEETT--BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHHHH
T ss_pred HHhcCCCCCEEEEEEeCC--CCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC---CCHHHHHhhcccHHHHHHHH
Confidence 2 347999999997775 5888899999999999886533 57888999999853 3577777643 366788887
Q ss_pred ccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCC
Q 021699 191 PSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSK 249 (309)
Q Consensus 191 ~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~ 249 (309)
.|.. +++++++... ... ....+.+|++.|...+...+.
T Consensus 174 ~~g~-----------~~~~~~~~~~--~~~--------~~~~v~~Ll~~i~~~~~~~~~ 211 (247)
T 3lxw_A 174 ECGG-----------RVCAFDNRAT--GRE--------QEAQVEQLLGMVEGLVLEHKG 211 (247)
T ss_dssp HTTT-----------CEEECCTTCC--HHH--------HHHHHHHHHHHHHHHHHHTTT
T ss_pred HcCC-----------eEEEEeCCCC--ccc--------cHHHHHHHHHHHHHHHHHcCC
Confidence 7632 3444443210 000 012489999999988876533
No 7
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.85 E-value=1.2e-21 Score=187.28 Aligned_cols=207 Identities=22% Similarity=0.291 Sum_probs=140.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~--~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|+|++.+...+++.+++|.+.....+..++..+.||||||+.+.....+ +.+..++...
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 273 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 273 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHH
Confidence 46999999999999999999999998778888889888887777788999999999999876432211 1222222211
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
....+|++|+|++... .++..+..++..+.+. + +|+++|+||+|+.+.+..+.+++. +.+++.+...
T Consensus 274 ~~~~ad~~llviD~~~-~~~~~~~~~~~~~~~~-~----~~~ilv~NK~Dl~~~~~~~~~~~~----~~~~~~~~~~--- 340 (456)
T 4dcu_A 274 AIDRSEVVAVVLDGEE-GIIEQDKRIAGYAHEA-G----KAVVIVVNKWDAVDKDESTMKEFE----ENIRDHFQFL--- 340 (456)
T ss_dssp HHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSCCCSSHHHHHH----HHHHHHCGGG---
T ss_pred HHhhCCEEEEEEeCCC-CcCHHHHHHHHHHHHc-C----CCEEEEEEChhcCCCchHHHHHHH----HHHHHhcccC---
Confidence 2257899999977654 5778888888877663 2 799999999999766555444443 2333333211
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCcc-------eeccccccCCCCCCCCc
Q 021699 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKAL-------LVDKKLVEGPNPNEKGK 268 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~-------~~~~~~~~~~~p~~~g~ 268 (309)
..+|++.+|+. ++.+ +.+|++.+.....+..+.. ++.++...+++|...|+
T Consensus 341 -------~~~~~~~~SA~----~g~g-----------v~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~~~~~~pp~~~~~ 398 (456)
T 4dcu_A 341 -------DYAPILFMSAL----TKKR-----------IHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGS 398 (456)
T ss_dssp -------TTSCEEECCTT----TCTT-----------GGGHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHSCCCEETTE
T ss_pred -------CCCCEEEEcCC----CCcC-----------HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCCCCCc
Confidence 23789888874 4443 5566666555554333222 44456677889899999
Q ss_pred ccccHHHHHHHH
Q 021699 269 ILIPFIFAFQYF 280 (309)
Q Consensus 269 ~~~~l~~~~q~~ 280 (309)
++ +++|++|..
T Consensus 399 ~~-ki~y~~q~~ 409 (456)
T 4dcu_A 399 RL-KIYYATQVS 409 (456)
T ss_dssp EC-CEEEEEEEE
T ss_pred ee-eEEEEecCC
Confidence 96 999999964
No 8
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.83 E-value=5.6e-21 Score=177.37 Aligned_cols=257 Identities=15% Similarity=0.195 Sum_probs=132.3
Q ss_pred hhhccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCC------CCCCe--eEE
Q 021699 8 IREWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ------SEGPR--PVM 79 (309)
Q Consensus 8 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~------~~t~~--~~~ 79 (309)
.+.++|+.++|....... ...+ ..++|+|+|.+|+|||||+|+|++...+..+..+ ..|.. ...
T Consensus 14 ~~~~v~~~~l~~~~~~k~-------~~~~-~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~ 85 (361)
T 2qag_A 14 TPGYVGFANLPNQVHRKS-------VKKG-FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEAST 85 (361)
T ss_dssp -------CCHHHHHHTHH-------HHHC-CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEE
T ss_pred CCceEEeccchHHhCCee-------ecCC-CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEE
Confidence 467999999998865532 1122 4699999999999999999999987654333211 11221 122
Q ss_pred EEeeeCCe--EEEEEeCCCCCCCCC-------CcHHHH----HHHHH-------hhhcCCCcEEEEEEeCCccccChhHH
Q 021699 80 VSRSRAGF--TLNIVDTPGLIEGGY-------VNYHAI----QLIKR-------FLLNKTIDVLLYVDRLDVYRVDNLDK 139 (309)
Q Consensus 80 ~~~~~~g~--~l~liDTPG~~~~~~-------~~~~~~----~~i~~-------~~~~~~~d~il~v~~~d~~~~~~~d~ 139 (309)
......+. .+.||||||+++... ...... ..++. .+.+.++|+++|++.....++.+.+.
T Consensus 86 ~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~ 165 (361)
T 2qag_A 86 VEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV 165 (361)
T ss_dssp EC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHH
T ss_pred EEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHH
Confidence 22333454 689999999965422 111111 11211 11234678899996543456778887
Q ss_pred HHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCC
Q 021699 140 QITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKN 219 (309)
Q Consensus 140 ~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~ 219 (309)
.+++.+. . ..|+|+|+||+|+..+. +. ....+.+.+.+... ++|++.+++. ++
T Consensus 166 ~~~~~l~----~--~~piIlV~NK~Dl~~~~-----ev-~~~k~~i~~~~~~~-----------~i~~~~~Sa~----~~ 218 (361)
T 2qag_A 166 AFMKAIH----N--KVNIVPVIAKADTLTLK-----ER-ERLKKRILDEIEEH-----------NIKIYHLPDA----ES 218 (361)
T ss_dssp HHHHHTC----S---SCEEEEEECCSSSCHH-----HH-HHHHHHHHHHTTCC------------CCSCCCC--------
T ss_pred HHHHHhc----c--CCCEEEEEECCCCCCHH-----HH-HHHHHHHHHHHHHC-----------CCCEEeCCCc----CC
Confidence 7776653 2 26999999999986321 11 11112333333321 2566655543 22
Q ss_pred cCCcccCCCCCCchHHHHHHH----HHHHhcCCCcceeccccccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhh
Q 021699 220 ENDEKVLPNGTAWIPNLVKTI----TEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAA 295 (309)
Q Consensus 220 ~~~~~~l~~~~~w~~~L~~~i----~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~ 295 (309)
.+ +. -+..|.+.+ ++++.++...+...+..+++|. |+||...+...-+|.|..+...+. ..-.|++
T Consensus 219 ~~-~e-------~~~~l~~~i~~~ip~~vv~s~~~~~~~g~~~~gr~-ypwg~~~ven~~h~df~~Lr~~l~-~~~~dl~ 288 (361)
T 2qag_A 219 DE-DE-------DFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRL-YPWGVVEVENPEHNDFLKLRTMLI-THMQDLQ 288 (361)
T ss_dssp -------------CHHHHHHHHHTCSCEECCCSEEC------CEEEC-CSSCCEESSCC-CCTHHHHHHHHH-HCCGGGT
T ss_pred Cc-ch-------hHHHHHHHHHhcCCCCEeCCCCccccCCeEEEEEe-cCCceEecCCCccCcHHHHHHHHH-HHHHHHH
Confidence 21 11 134444444 4444455444555677788888 999999999999999999666677 7777887
Q ss_pred hcccchh--hhhhccC
Q 021699 296 KEAKPVW--ARASRRL 309 (309)
Q Consensus 296 ~~~~~~~--~~~~~~~ 309 (309)
+.-...| .||.++|
T Consensus 289 ~~t~~~~ye~yr~~~l 304 (361)
T 2qag_A 289 EVTQDLHYENFRSERL 304 (361)
T ss_dssp HHHHTTTHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7765444 4666554
No 9
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.80 E-value=5.1e-19 Score=168.33 Aligned_cols=198 Identities=20% Similarity=0.308 Sum_probs=125.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---------HHHH
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---------YHAI 108 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~---------~~~~ 108 (309)
..++|+++|++|+|||||+|+|+|.....+++.+++|.++......++|..+.+|||||+....... ....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 4589999999999999999999999877788999999888888888899999999999985432211 1112
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHh
Q 021699 109 QLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKF 188 (309)
Q Consensus 109 ~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~ 188 (309)
..+ ..+|++++|++... ..+..+..+...+.+. + +++++|+||+|+.+.+..+.+++. +.+.+.
T Consensus 259 ~~i------~~ad~vllv~d~~~-~~~~~~~~i~~~l~~~-~----~~~ilv~NK~Dl~~~~~~~~~~~~----~~~~~~ 322 (439)
T 1mky_A 259 DSI------EKADVVVIVLDATQ-GITRQDQRMAGLMERR-G----RASVVVFNKWDLVVHREKRYDEFT----KLFREK 322 (439)
T ss_dssp HHH------HHCSEEEEEEETTT-CCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSTTGGGCHHHHH----HHHHHH
T ss_pred HHH------hhCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-C----CCEEEEEECccCCCchhhHHHHHH----HHHHHH
Confidence 222 46899999977653 3556666665555432 3 799999999999754433343332 222222
Q ss_pred hcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCcc-------eeccccccCC
Q 021699 189 VSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKAL-------LVDKKLVEGP 261 (309)
Q Consensus 189 i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~-------~~~~~~~~~~ 261 (309)
+... ...|++.+|+. ++.+ +.+|++.+.....+....+ ++.++...++
T Consensus 323 ~~~~----------~~~~~~~~SA~----~g~g-----------v~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~ 377 (439)
T 1mky_A 323 LYFI----------DYSPLIFTSAD----KGWN-----------IDRMIDAMNLAYASYTTKVPSSAINSALQKVLAFTN 377 (439)
T ss_dssp CGGG----------TTSCEEECBTT----TTBS-----------HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCC
T ss_pred hccC----------CCCcEEEEECC----CCCC-----------HHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHcCC
Confidence 2211 13688888774 4443 6778777766654433222 4445666677
Q ss_pred CCCCCCcccccHHHHHHHHH
Q 021699 262 NPNEKGKILIPFIFAFQYFF 281 (309)
Q Consensus 262 ~p~~~g~~~~~l~~~~q~~~ 281 (309)
+| ++. +++|++|..-
T Consensus 378 ~~----~~~-ki~y~~q~~~ 392 (439)
T 1mky_A 378 LP----RGL-KIFFGVQVDI 392 (439)
T ss_dssp CS----TTC-CEEEEEEEET
T ss_pred CC----CCc-EEEEEEecCC
Confidence 76 453 7778888754
No 10
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.79 E-value=4.3e-18 Score=146.42 Aligned_cols=179 Identities=16% Similarity=0.098 Sum_probs=116.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCC-cccccCCCCCCCeeEEEEee-eCCeEEEEEeCCCCCCCCCCcH---HHHHHHH
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRS-RAGFTLNIVDTPGLIEGGYVNY---HAIQLIK 112 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~-~~g~~l~liDTPG~~~~~~~~~---~~~~~i~ 112 (309)
..++|+|+|.+|+|||||+|+|++.. ...++..+++|......... .++..+.||||||+.+...... .+...+.
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 46899999999999999999999987 45677777788776666655 5678999999999976543322 2233344
Q ss_pred Hhhh-cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcc
Q 021699 113 RFLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSP 191 (309)
Q Consensus 113 ~~~~-~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~ 191 (309)
.++. ...+|++++|++... .++..+..+++.+.+. ..|+++|+||+|+.+... .++.. +.+.+.+..
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~l~~~-----~~p~i~v~nK~Dl~~~~~--~~~~~----~~~~~~l~~ 175 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARR-PLTELDRRMIEWFAPT-----GKPIHSLLTKCDKLTRQE--SINAL----RATQKSLDA 175 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHGGG-----CCCEEEEEECGGGSCHHH--HHHHH----HHHHHHHHH
T ss_pred HHHhcCcCcCEEEEEEeCCC-CCCHHHHHHHHHHHhc-----CCCEEEEEeccccCChhh--HHHHH----HHHHHHHHh
Confidence 4442 356899999977653 4677777777777652 279999999999863211 11122 222233322
Q ss_pred cccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021699 192 STWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 192 ~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
..... .....|++.+++. ++.+ +.+|++.+...+...
T Consensus 176 ~~~~~----~~~~~~~~~~SA~----~g~g-----------v~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 176 YRDAG----YAGKLTVQLFSAL----KRTG-----------LDDAHALIESWLRPA 212 (223)
T ss_dssp HHHHT----CCSCEEEEEEBTT----TTBS-----------HHHHHHHHHHHHC--
T ss_pred hhhcc----cCCCCeEEEeecC----CCcC-----------HHHHHHHHHHhcCcc
Confidence 10000 0123688888764 3332 788888888877654
No 11
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.79 E-value=4.1e-18 Score=150.70 Aligned_cols=151 Identities=23% Similarity=0.281 Sum_probs=111.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCC-CCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-EGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~-~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
...++|+|+|.+|+|||||+|+|++...+..+..+. +|..+......+++..+.||||||+.+.....+.+.+.+.++.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 356999999999999999999999988666555444 6777777777889999999999999876655555444443322
Q ss_pred --hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEe-cccCCCCCCCCHHHHHHhh-hHHHHHhhcc
Q 021699 116 --LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT-HAQLSLPDRLDYEVFCSKR-SEALLKFVSP 191 (309)
Q Consensus 116 --~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~t-k~D~~~~~~~~~~~~~~~~-~~~l~~~i~~ 191 (309)
..+++|++++|++++ +++..+..+++.+.+.++.....|.++|+| |+|+... +..+++... .+.+++.+..
T Consensus 100 ~~~~~~~d~il~V~d~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLG--RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG---SLMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHTTCCSEEEEEEETT--CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC---CHHHHHHHCCCHHHHHHHHH
T ss_pred HhcCCCCcEEEEEEeCC--CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc---cHHHHHHhcchHHHHHHHHH
Confidence 237899999997776 477888888899999888766678888888 9998622 455554422 1334455544
Q ss_pred c
Q 021699 192 S 192 (309)
Q Consensus 192 ~ 192 (309)
+
T Consensus 175 ~ 175 (260)
T 2xtp_A 175 C 175 (260)
T ss_dssp T
T ss_pred h
Confidence 3
No 12
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.78 E-value=7e-18 Score=153.25 Aligned_cols=122 Identities=21% Similarity=0.292 Sum_probs=93.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC-CeEEEEEeCCCCCCCCC---CcHHHHHHHHH
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGY---VNYHAIQLIKR 113 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~-g~~l~liDTPG~~~~~~---~~~~~~~~i~~ 113 (309)
.+-.|+++|.+|+|||||+|+|+|.....+++.+++|..........+ +..+.||||||+.+... ..+........
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~ 88 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQ 88 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHH
Confidence 467899999999999999999999998778888899988887777787 89999999999987541 11222222233
Q ss_pred hhhcCCCcEEEEEEeCCccccChhHHHH-HHHHHHHhCccccCcEEEEEecccCC
Q 021699 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQI-TRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 114 ~~~~~~~d~il~v~~~d~~~~~~~d~~~-l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++ ..+|++++|++++. ..+..+..+ ++.+... ..|+++|+||+|+.
T Consensus 89 ~l--~~aD~il~VvD~~~-~~~~~~~~~~~~~l~~~-----~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 89 SL--EEADVILFMIDATE-GWRPRDEEIYQNFIKPL-----NKPVIVVINKIDKI 135 (308)
T ss_dssp HH--HHCSEEEEEEETTT-BSCHHHHHHHHHHTGGG-----CCCEEEEEECGGGS
T ss_pred Hh--hcCCEEEEEEeCCC-CCCchhHHHHHHHHHhc-----CCCEEEEEECccCC
Confidence 33 58999999977753 355566555 5555442 27999999999986
No 13
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.77 E-value=1.3e-17 Score=151.08 Aligned_cols=125 Identities=21% Similarity=0.205 Sum_probs=93.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH-HHHHHHhhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA-IQLIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~-~~~i~~~~~ 116 (309)
...+|+++|.+|+|||||+|+|+|...+.+++.+++|..........++..+.||||||+.+....-.+. ......++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l- 84 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL- 84 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT-
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH-
Confidence 3468999999999999999999999887778888888877766666788899999999997654322222 22222233
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|++++|++++. .++..+..+++.+.+.++ ..|+++|+||+|+.+
T Consensus 85 -~~ad~il~VvD~~~-~~~~~~~~i~~~l~~~~~---~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 85 -ADVNAVVWVVDLRH-PPTPEDELVARALKPLVG---KVPILLVGNKLDAAK 131 (301)
T ss_dssp -SSCSEEEEEEETTS-CCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGCS
T ss_pred -hcCCEEEEEEECCC-CCChHHHHHHHHHHhhcC---CCCEEEEEECcccCC
Confidence 68999999988754 466677666666655421 279999999999863
No 14
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.76 E-value=5.4e-17 Score=140.60 Aligned_cols=136 Identities=21% Similarity=0.255 Sum_probs=86.7
Q ss_pred hhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHH--HHH
Q 021699 32 LKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH--AIQ 109 (309)
Q Consensus 32 ~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~--~~~ 109 (309)
+.......++|+|+|.+|+|||||+|+|++... .+.+.+.+|...........+..+.||||||+.+....... ...
T Consensus 22 ~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 100 (228)
T 2qu8_A 22 LPSINPHKKTIILSGAPNVGKSSFMNIVSRANV-DVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMT 100 (228)
T ss_dssp CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCE-EEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHH
Confidence 333344679999999999999999999999875 35556666776666666778889999999999754321111 012
Q ss_pred HHHHhhhcCCCcEEEEEEeCCcc-ccC-hhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCC
Q 021699 110 LIKRFLLNKTIDVLLYVDRLDVY-RVD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (309)
Q Consensus 110 ~i~~~~~~~~~d~il~v~~~d~~-~~~-~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~ 173 (309)
.+..+. ..+|++++|++++.. ++. ..+..++..+...+. ..|+++|+||+|+.+.....
T Consensus 101 ~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~---~~piilv~nK~Dl~~~~~~~ 161 (228)
T 2qu8_A 101 TITALA--HINGVILFIIDISEQCGLTIKEQINLFYSIKSVFS---NKSIVIGFNKIDKCNMDSLS 161 (228)
T ss_dssp HHHHHH--TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC----CCCEEEEEECGGGCC--CCC
T ss_pred HHHHhh--ccccEEEEEEecccccCcchHHHHHHHHHHHHhhc---CCcEEEEEeCcccCCchhhH
Confidence 222222 578999999887542 233 223445555544321 27999999999997554433
No 15
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.76 E-value=1.8e-17 Score=134.60 Aligned_cols=120 Identities=19% Similarity=0.261 Sum_probs=82.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
.+|+++|.+|+|||||+|++++......+..++++..........++..+.+|||||..+..............++ ..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~--~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRAL--ED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHT--TT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHH--Hh
Confidence 5899999999999999999999875455666777777777777888899999999999764433333333333333 68
Q ss_pred CcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 120 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 120 ~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+|++++|++... .++..+..+.+.+.+. + .|+++|+||+|+.
T Consensus 80 ~~~~i~v~d~~~-~~~~~~~~~~~~~~~~-~----~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 80 AEVVLFAVDGRA-ELTQADYEVAEYLRRK-G----KPVILVATKVDDP 121 (161)
T ss_dssp CSEEEEEEESSS-CCCHHHHHHHHHHHHH-T----CCEEEEEECCCSG
T ss_pred CCEEEEEEECCC-cccHhHHHHHHHHHhc-C----CCEEEEEECcccc
Confidence 999999987754 3556666666666552 2 7999999999985
No 16
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.76 E-value=1.2e-17 Score=143.20 Aligned_cols=194 Identities=11% Similarity=0.102 Sum_probs=106.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CC--eEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
..++|+|+|.+|+|||||+|+|++...... ..+..+.......... ++ ..+.||||||..+.......+ +
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~---~--- 82 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKN-YNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVY---Y--- 82 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCE-EETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHH---H---
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHH---h---
Confidence 569999999999999999999998763211 1111111122222222 22 579999999986554444322 1
Q ss_pred hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccc
Q 021699 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTW 194 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 194 (309)
..+|++++|++++..........++..+....+.. .|+++|+||+|+.+......+ ...++...
T Consensus 83 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~--------~~~~~~~~--- 146 (218)
T 4djt_A 83 ---IGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKNRQKISKK--------LVMEVLKG--- 146 (218)
T ss_dssp ---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC----CCHH--------HHHHHTTT---
T ss_pred ---hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHH--------HHHHHHHH---
Confidence 58999999988764321122345667776665543 699999999998643332222 12222221
Q ss_pred ccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCccee-------ccccccCCCCCCCC
Q 021699 195 MKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLV-------DKKLVEGPNPNEKG 267 (309)
Q Consensus 195 ~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~~~-------~~~~~~~~~p~~~g 267 (309)
.+++++.+++. ++.+ +.++++.+...+....+.... .......++|...+
T Consensus 147 --------~~~~~~~~Sa~----~g~g-----------v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (218)
T 4djt_A 147 --------KNYEYFEISAK----TAHN-----------FGLPFLHLARIFTGRPDLIFVSNVNLEPTEVNYDYHSPEESK 203 (218)
T ss_dssp --------CCCEEEEEBTT----TTBT-----------TTHHHHHHHHHHHCCTTCCBCSCCCCCBCCCCCCCCCC----
T ss_pred --------cCCcEEEEecC----CCCC-----------HHHHHHHHHHHHhcccccccccccCcCCCccccCccCchhhh
Confidence 12577777763 3433 678888887777765544322 22334444445443
Q ss_pred cccccHHHHHHHHH
Q 021699 268 KILIPFIFAFQYFF 281 (309)
Q Consensus 268 ~~~~~l~~~~q~~~ 281 (309)
.++|++|..-
T Consensus 204 ----~~~y~~q~~~ 213 (218)
T 4djt_A 204 ----YIDYMEQASK 213 (218)
T ss_dssp --------------
T ss_pred ----hHHHHHHHhc
Confidence 4679999654
No 17
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.76 E-value=5.5e-17 Score=136.34 Aligned_cols=167 Identities=16% Similarity=0.172 Sum_probs=99.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH---HHHHHHHH
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY---HAIQLIKR 113 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~---~~~~~i~~ 113 (309)
..++|+|+|.+|+|||||+|+|++.. ....++.+++|........ +..+.+|||||+.+...... .+......
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 56999999999999999999999986 3344555566655444332 33799999999876544322 22222333
Q ss_pred hhh-cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccc
Q 021699 114 FLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPS 192 (309)
Q Consensus 114 ~~~-~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~ 192 (309)
++. ...+|++++|++++. ..+..+..+++.+... ..|+++|+||+|+.++.+ .+.. .+.+++.+...
T Consensus 99 ~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~~~--~~~~----~~~~~~~~~~~ 166 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRH-APSNDDVQMYEFLKYY-----GIPVIVIATKADKIPKGK--WDKH----AKVVRQTLNID 166 (195)
T ss_dssp HHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCGGG--HHHH----HHHHHHHHTCC
T ss_pred HHhhhhcCCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECcccCChHH--HHHH----HHHHHHHHccc
Confidence 332 246699999987653 4566666666666542 269999999999964332 2221 13333333221
Q ss_pred ccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHH
Q 021699 193 TWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVV 244 (309)
Q Consensus 193 ~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~ 244 (309)
...+++.+++. ++.+ +.+|++.+...+
T Consensus 167 ----------~~~~~~~~Sa~----~~~g-----------v~~l~~~l~~~l 193 (195)
T 1svi_A 167 ----------PEDELILFSSE----TKKG-----------KDEAWGAIKKMI 193 (195)
T ss_dssp ----------TTSEEEECCTT----TCTT-----------HHHHHHHHHHHH
T ss_pred ----------CCCceEEEEcc----CCCC-----------HHHHHHHHHHHh
Confidence 12577777663 3332 778888776654
No 18
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.76 E-value=5.5e-17 Score=136.29 Aligned_cols=164 Identities=18% Similarity=0.195 Sum_probs=105.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++... .....+..+..........++ ..+.||||||..+...... .++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~ 86 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITS-------SYY 86 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHH-------HHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHH-------HHH
Confidence 469999999999999999999998764 333344445555555566666 4789999999754333221 122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
..+|++++|++++..........++..+....... .|+++|+||+|+.+....+.++. ..+.+.+
T Consensus 87 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~~~~~~~~~-----~~~~~~~------ 151 (196)
T 3tkl_A 87 --RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTKKVVDYTTA-----KEFADSL------ 151 (196)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHHHH-----HHHHHHT------
T ss_pred --hhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccccCHHHH-----HHHHHHc------
Confidence 68999999988764221122345666666654433 69999999999976655444332 1111111
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021699 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
++|++.+++. ++.+ +.++++.+...+...
T Consensus 152 --------~~~~~~~Sa~----~g~g-----------v~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 152 --------GIPFLETSAK----NATN-----------VEQSFMTMAAEIKKR 180 (196)
T ss_dssp --------TCCEEEECTT----TCTT-----------HHHHHHHHHHHHHHH
T ss_pred --------CCcEEEEeCC----CCCC-----------HHHHHHHHHHHHHHH
Confidence 2577777663 3333 677777776666543
No 19
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.76 E-value=3.1e-17 Score=135.66 Aligned_cols=124 Identities=17% Similarity=0.122 Sum_probs=83.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|+|++.... ....++.+..........++ ..+.+|||||..+....... ++
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~ 79 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITST-------YY 79 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGG-------GG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHH-------Hh
Confidence 4699999999999999999999988642 33344455555555666677 57899999997544333222 11
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
..+|++++|++++.......-..++..+.+... ..|+++|+||+|+.+......
T Consensus 80 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~ 133 (181)
T 3tw8_B 80 --RGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPERKVVET 133 (181)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGGGCCSCH
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCchhcccCH
Confidence 688999999887642211222345666655433 268999999999865444333
No 20
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.75 E-value=2.2e-19 Score=168.66 Aligned_cols=235 Identities=13% Similarity=0.124 Sum_probs=124.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccccc--C-CCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCC---------
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVS--T-FQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYV--------- 103 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~--~-~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~--------- 103 (309)
..++++|+|++|+|||||+|.|+|....... . .++.+.....+.....+. .++++|+||++.....
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 3467999999999999999999998532111 1 122222222222233332 6899999999763211
Q ss_pred --cHHHHHHHHHhh---------hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCC
Q 021699 104 --NYHAIQLIKRFL---------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 172 (309)
Q Consensus 104 --~~~~~~~i~~~~---------~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~ 172 (309)
..++...+..+. .+.++|+|+|++....+.++..|.++++.|.. ..++|+|+||+|...+.
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~~------~~~vI~Vi~KtD~Lt~~-- 192 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDS------KVNIIPIIAKADAISKS-- 192 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTCS------CSEEEEEESCGGGSCHH--
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHhh------CCCEEEEEcchhccchH--
Confidence 011111222221 12245777766443344688889888887752 16999999999987432
Q ss_pred CHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCcce
Q 021699 173 DYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALL 252 (309)
Q Consensus 173 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~~~ 252 (309)
+. ..+++.|+... ...++++++++... + +...-...|...+++++.++...+.
T Consensus 193 ---E~-----~~l~~~I~~~L-------~~~gi~I~~is~~d--------~----~~~~~~~~~~~~~PFavvgs~~~~~ 245 (427)
T 2qag_B 193 ---EL-----TKFKIKITSEL-------VSNGVQIYQFPTDD--------E----SVAEINGTMNAHLPFAVIGSTEELK 245 (427)
T ss_dssp ---HH-----HHHHHHHHHHH-------BTTBCCCCCCC-----------------CCSHHHHHTTC-CCBCCC------
T ss_pred ---HH-----HHHHHHHHHHH-------HHcCCcEEecCCCc--------h----hHHHHHhhhcCCCCeEEECCCCeee
Confidence 21 23333343211 11246777665321 0 0011124455678899999888888
Q ss_pred eccccccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhhhcccchh--hhhhcc
Q 021699 253 VDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVW--ARASRR 308 (309)
Q Consensus 253 ~~~~~~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 308 (309)
+++..+++|. |+||...|...-+|.|..+...+.+..-.|+++.-...| .||.++
T Consensus 246 ~~g~~vrgR~-ypWG~~even~~h~DF~~Lr~~l~~t~~~dL~~~T~~~~YE~yR~~~ 302 (427)
T 2qag_B 246 IGNKMMRARQ-YPWGTVQVENEAHCDFVKLREMLIRVNMEDLREQTHTRHYELYRRCK 302 (427)
T ss_dssp --CCCC------CCCCCC-----CCSSHHHHHHHHHTSTTHHHHHHHHHTTHHHHHHH
T ss_pred eCCcEEEEec-CCCceEEeCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999 999999999999999999677788888888887654333 355543
No 21
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.75 E-value=7.4e-18 Score=150.62 Aligned_cols=119 Identities=18% Similarity=0.267 Sum_probs=90.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC-----cHHHHHHHH
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-----NYHAIQLIK 112 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~-----~~~~~~~i~ 112 (309)
..++|+++|.+|+|||||+|+|+|.. ..+++.+++|.......+...+..+.+|||||+.+.... .++ ...+
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e--~i~~ 78 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDE--QIAC 78 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHH--HHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHH--HHHH
Confidence 45899999999999999999999987 478888999998888888888899999999999875521 111 1233
Q ss_pred HhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 113 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 113 ~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++....+|++++|++... . +....+...+.+. + .|+++|+||+|+.
T Consensus 79 ~~~~~~~~d~ii~VvD~~~--~-~~~~~~~~~l~~~-~----~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASN--L-ERNLYLTLQLLEL-G----IPCIVALNMLDIA 125 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGG--H-HHHHHHHHHHHHH-T----CCEEEEEECHHHH
T ss_pred HHHhhcCCCEEEEEecCCC--h-HHHHHHHHHHHhc-C----CCEEEEEECccch
Confidence 4455579999999966542 2 3344455555544 2 7999999999985
No 22
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=6.9e-17 Score=133.72 Aligned_cols=165 Identities=12% Similarity=0.062 Sum_probs=101.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|+|++.........+..+..........++. .+.+|||||..+... ....++
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~~~~~~ 81 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS-------VTHAYY 81 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHH-------HHHHHc
Confidence 46999999999999999999999877533333444444444444455664 789999999743221 112222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
..+|++++|++++.......-..++..+...... ..|+++|+||+|+.++.....++.. ++....
T Consensus 82 --~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~--------~~~~~~--- 146 (180)
T 2g6b_A 82 --RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH--DVALMLLGNKVDSAHERVVKREDGE--------KLAKEY--- 146 (180)
T ss_dssp --GGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECCSTTSCCCSCHHHHH--------HHHHHH---
T ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccCcccccCHHHHH--------HHHHHc---
Confidence 5789999998876422112224566666665432 2699999999999765544443321 111111
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021699 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
++|++.+++. ++.+ +.++++.+...+...
T Consensus 147 --------~~~~~~~Sa~----~~~g-----------i~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 147 --------GLPFMETSAK----TGLN-----------VDLAFTAIAKELKRR 175 (180)
T ss_dssp --------TCCEEECCTT----TCTT-----------HHHHHHHHHHHHHC-
T ss_pred --------CCeEEEEeCC----CCCC-----------HHHHHHHHHHHHHHH
Confidence 1567766653 3332 788888887776543
No 23
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.75 E-value=2.5e-16 Score=131.88 Aligned_cols=168 Identities=16% Similarity=0.130 Sum_probs=107.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH---HHHHHHHHh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY---HAIQLIKRF 114 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~---~~~~~i~~~ 114 (309)
..++|+++|.+|+|||||+|+|++......++.+++|....... .+.++.+|||||+........ .+......+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 45899999999999999999999988656666666666544332 244689999999865432221 222222333
Q ss_pred h-hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccc
Q 021699 115 L-LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPST 193 (309)
Q Consensus 115 ~-~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 193 (309)
+ ....+|++++|++.+. ..+..+..+++.+... + .|+++|+||+|+.++.+ .+... +.+++.....
T Consensus 99 ~~~~~~~~~vi~v~d~~~-~~~~~~~~~~~~~~~~-~----~p~i~v~nK~Dl~~~~~--~~~~~----~~~~~~~~~~- 165 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRI-PPQDSDLMMVEWMKSL-N----IPFTIVLTKMDKVKMSE--RAKKL----EEHRKVFSKY- 165 (195)
T ss_dssp HHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHT-T----CCEEEEEECGGGSCGGG--HHHHH----HHHHHHHHSS-
T ss_pred HhcCcCceEEEEEecCCC-CCCHHHHHHHHHHHHc-C----CCEEEEEEChhcCChHH--HHHHH----HHHHHHHhhc-
Confidence 3 2357799999977643 4556666666666654 2 79999999999864321 22221 3333433321
Q ss_pred cccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021699 194 WMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 194 ~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
..++++.+++. ++.+ +.+|++.+...+.
T Consensus 166 ---------~~~~~~~~Sa~----~~~g-----------v~~l~~~l~~~l~ 193 (195)
T 3pqc_A 166 ---------GEYTIIPTSSV----TGEG-----------ISELLDLISTLLK 193 (195)
T ss_dssp ---------CCSCEEECCTT----TCTT-----------HHHHHHHHHHHHC
T ss_pred ---------CCCceEEEecC----CCCC-----------HHHHHHHHHHHhh
Confidence 12577777663 3332 7888888877664
No 24
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.74 E-value=1.4e-16 Score=130.02 Aligned_cols=125 Identities=16% Similarity=0.073 Sum_probs=82.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|+|++... .....+..+.+........++ ..+.+|||||..+.......+ +
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~---~---- 75 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIF-TKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAY---Y---- 75 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCC-CCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHH---H----
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHH---h----
Confidence 469999999999999999999998753 222233333444444555555 478999999975544333221 2
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++..........++..+..... ..|+++|+||+|+.++...+.+
T Consensus 76 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~~~~~~ 130 (168)
T 1z2a_A 76 --RGAQACVLVFSTTDRESFEAISSWREKVVAEVG---DIPTALVQNKIDLLDDSCIKNE 130 (168)
T ss_dssp --TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC---SCCEEEEEECGGGGGGCSSCHH
T ss_pred --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccCcccccCHH
Confidence 589999999887642211222345666655442 2799999999998654443333
No 25
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.74 E-value=1.5e-17 Score=147.23 Aligned_cols=160 Identities=15% Similarity=0.197 Sum_probs=107.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHhhh
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRFLL 116 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~---~~~~~~i~~~~~ 116 (309)
.+|+++|.+|+|||||+|+|+|.. ..+++.+++|.+.....+.+++..+.||||||+.+..... .......+.++.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 379999999999999999999986 4678889999988888888899999999999997654321 111122344555
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccccc
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMK 196 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 196 (309)
..++|++++|++.+. . .....+...+.+. ..|+++|+||+|+.+..+...+ .+.+.+.+.
T Consensus 81 ~~~~d~vi~VvDas~--~-~~~~~l~~~l~~~-----~~pvilv~NK~Dl~~~~~~~~~------~~~l~~~lg------ 140 (256)
T 3iby_A 81 DLEYDCIINVIDACH--L-ERHLYLTSQLFEL-----GKPVVVALNMMDIAEHRGISID------TEKLESLLG------ 140 (256)
T ss_dssp HSCCSEEEEEEEGGG--H-HHHHHHHHHHTTS-----CSCEEEEEECHHHHHHTTCEEC------HHHHHHHHC------
T ss_pred hCCCCEEEEEeeCCC--c-hhHHHHHHHHHHc-----CCCEEEEEEChhcCCcCCcHHH------HHHHHHHcC------
Confidence 578999999966543 1 2233333333322 3799999999998533322111 122333332
Q ss_pred ccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHH
Q 021699 197 KKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEV 243 (309)
Q Consensus 197 ~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~ 243 (309)
+|++.+++. ++.+ +.+|++.+...
T Consensus 141 --------~~vi~~SA~----~g~g-----------i~el~~~i~~~ 164 (256)
T 3iby_A 141 --------CSVIPIQAH----KNIG-----------IPALQQSLLHC 164 (256)
T ss_dssp --------SCEEECBGG----GTBS-----------HHHHHHHHHTC
T ss_pred --------CCEEEEECC----CCCC-----------HHHHHHHHHhh
Confidence 688887764 3333 77888877766
No 26
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.74 E-value=1.4e-16 Score=130.29 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=77.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++... .....++.+..........++ ..+.+|||||..+.......+ +
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~---~---- 73 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAY---Y---- 73 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCC-CC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHH---H----
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHH---h----
Confidence 358999999999999999999998764 223333444444444555555 478999999985544333221 2
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++++..........++..+....... .|+++|+||+|+.
T Consensus 74 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~ 121 (170)
T 1g16_A 74 --RGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDME 121 (170)
T ss_dssp --TTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCT
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCC
Confidence 58999999988764221122345666666654332 6999999999983
No 27
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.74 E-value=7.8e-17 Score=142.74 Aligned_cols=163 Identities=20% Similarity=0.304 Sum_probs=110.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
..++|+++|.+|+|||||+|+|+|... .++..+++|...........+..+.||||||+.+......+ ....+.++..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~-~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-e~v~~~~~~~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSID-EKIARDYLLK 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHH-HHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHH-HHHHHHHHhh
Confidence 458999999999999999999999874 57778888888888778888899999999999765443321 1122344444
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccc
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKK 197 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 197 (309)
..+|++++|++.+. + .....+...+.+. ..|+++|+||+|+....+...+ .+.+.+.+
T Consensus 82 ~~~d~ii~V~D~t~--~-~~~~~~~~~l~~~-----~~pvilv~NK~Dl~~~~~i~~~------~~~l~~~l-------- 139 (258)
T 3a1s_A 82 GDADLVILVADSVN--P-EQSLYLLLEILEM-----EKKVILAMTAIDEAKKTGMKID------RYELQKHL-------- 139 (258)
T ss_dssp SCCSEEEEEEETTS--C-HHHHHHHHHHHTT-----TCCEEEEEECHHHHHHTTCCBC------HHHHHHHH--------
T ss_pred cCCCEEEEEeCCCc--h-hhHHHHHHHHHhc-----CCCEEEEEECcCCCCccchHHH------HHHHHHHc--------
Confidence 68999999976653 2 2223344444332 2799999999998533322211 12222222
Q ss_pred cccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021699 198 KDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 198 ~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
++|++.+++. ++.+ +.+|++.+.....
T Consensus 140 ------g~~vi~~SA~----~g~g-----------i~el~~~i~~~~~ 166 (258)
T 3a1s_A 140 ------GIPVVFTSSV----TGEG-----------LEELKEKIVEYAQ 166 (258)
T ss_dssp ------CSCEEECCTT----TCTT-----------HHHHHHHHHHHHH
T ss_pred ------CCCEEEEEee----CCcC-----------HHHHHHHHHHHhh
Confidence 2688887763 3333 7888888877664
No 28
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.74 E-value=1.4e-16 Score=131.71 Aligned_cols=166 Identities=19% Similarity=0.167 Sum_probs=102.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC---eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG---FTLNIVDTPGLIEGGYVNYHAIQLIKR 113 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g---~~l~liDTPG~~~~~~~~~~~~~~i~~ 113 (309)
...++|+++|.+|+|||||+|+|++.... ....+..+.+.......+.+ ..+.+|||||.......... .+
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~---~~-- 77 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFG-KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDK---YI-- 77 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTT-HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHH---HH--
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCC-CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhH---HH--
Confidence 35699999999999999999999987532 12223333445555566665 68999999998654333221 12
Q ss_pred hhhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCc-EEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcc
Q 021699 114 FLLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSP 191 (309)
Q Consensus 114 ~~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~-~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~ 191 (309)
..+|++++|++++.. ++ ..-..++..+..........| +++|+||+|+.+....+.++. .++...
T Consensus 78 ----~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~--------~~~~~~ 144 (178)
T 2hxs_A 78 ----YGAQGVLLVYDITNYQSF-ENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKH--------LRFCQE 144 (178)
T ss_dssp ----TTCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHH--------HHHHHH
T ss_pred ----hhCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHH--------HHHHHH
Confidence 589999999887542 22 122345566655432111145 899999999864444433322 122211
Q ss_pred cccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021699 192 STWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 192 ~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
. ++|++.+++. ++.+ +.++++.+...+.+.
T Consensus 145 ~-----------~~~~~~~Sa~----~~~g-----------i~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 145 N-----------GFSSHFVSAK----TGDS-----------VFLCFQKVAAEILGI 174 (178)
T ss_dssp H-----------TCEEEEECTT----TCTT-----------HHHHHHHHHHHHTTC
T ss_pred c-----------CCcEEEEeCC----CCCC-----------HHHHHHHHHHHHHhh
Confidence 1 1577777663 3332 788888888877654
No 29
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.74 E-value=1.7e-16 Score=131.14 Aligned_cols=126 Identities=22% Similarity=0.170 Sum_probs=82.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+++|.+|+|||||+|+|++.. ......+++..........++. .+.+|||||..+.......+ +
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~---~--- 78 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQY---M--- 78 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSS--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHH---H---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCc--CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHH---H---
Confidence 457999999999999999999999875 3344445555544455566664 78899999986554433222 2
Q ss_pred hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021699 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
..+|++++|++++.......-..++..+.+.... ...|+++|+||+|+.+....+.
T Consensus 79 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~ 134 (181)
T 2fn4_A 79 ---RAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVVLVGNKADLESQRQVPR 134 (181)
T ss_dssp ---HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS-SCCCEEEEEECGGGGGGCCSCH
T ss_pred ---hhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccccCH
Confidence 3689999998876422112223445555333321 1269999999999965444433
No 30
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.74 E-value=4.3e-17 Score=135.18 Aligned_cols=125 Identities=18% Similarity=0.211 Sum_probs=89.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH-HHHHHHhhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA-IQLIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~-~~~i~~~~~ 116 (309)
..++|+++|.+|+|||||+|+|++.....+++.+++|.+.......+++..+.+|||||+.+.....+.. ......+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-- 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQE-- 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHH--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHH--
Confidence 4589999999999999999999998755567777888777777778889899999999996532211110 1111111
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
...+|++++|++.+. ..+..+..++..+.+..... .|+++|+||+|+.
T Consensus 81 ~~~ad~~i~v~D~~~-~~s~~~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 81 IEQADRVLFMVDGTT-TDAVDPAEIWPEFIARLPAK--LPITVVRNKADIT 128 (172)
T ss_dssp HHTCSEEEEEEETTT-CCCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHH
T ss_pred HHhCCEEEEEEECCC-CCCHHHHHHHHHHHHhcccC--CCEEEEEECccCC
Confidence 258999999988754 22333566777776654322 6999999999984
No 31
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.73 E-value=8.9e-17 Score=131.68 Aligned_cols=162 Identities=15% Similarity=0.122 Sum_probs=98.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++... .....+..+..........++. .+.+|||||..+.... ...+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~~~~- 75 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKF-NDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHAL-------GPIY- 75 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCC-CSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCS-
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC-CcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhh-------HHHH-
Confidence 469999999999999999999998753 2223334444444445555554 6889999997432211 1111
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
...+|++++|++++..........++..+....+.. .|+++|+||+|+.++...+.++. +++....
T Consensus 76 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~--------~~~~~~~--- 141 (170)
T 1z08_A 76 -YRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKERHVSIQEA--------ESYAESV--- 141 (170)
T ss_dssp -STTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGGCCSCHHHH--------HHHHHHT---
T ss_pred -hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcccccccccCHHHH--------HHHHHHc---
Confidence 258899999988764221122235666666654433 68999999999975544444332 2222211
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021699 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
+++++.+++. ++.+ +.+|++.+...+.
T Consensus 142 --------~~~~~~~Sa~----~~~g-----------i~~l~~~l~~~~~ 168 (170)
T 1z08_A 142 --------GAKHYHTSAK----QNKG-----------IEELFLDLCKRMI 168 (170)
T ss_dssp --------TCEEEEEBTT----TTBS-----------HHHHHHHHHHHHH
T ss_pred --------CCeEEEecCC----CCCC-----------HHHHHHHHHHHHh
Confidence 1567766653 3333 7788887776654
No 32
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.73 E-value=5.3e-17 Score=132.89 Aligned_cols=123 Identities=15% Similarity=0.106 Sum_probs=77.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++..... ...+..+.........+.+ ..+.+|||||..+...... .++
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~-------~~~ 76 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDP-NINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAP-------MYY 76 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTH-------HHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccH-------hhC
Confidence 46999999999999999999999876321 1112222222222333443 5789999999843322211 122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCC
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 172 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~ 172 (309)
..+|++++|++++..........++..+....... .|+++|+||+|+.+....
T Consensus 77 --~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~~~v 129 (170)
T 1z0j_A 77 --RGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTDVREV 129 (170)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGGGCCS
T ss_pred --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECCcccccccc
Confidence 68899999988764221122345666666543322 689999999999654443
No 33
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.73 E-value=1.8e-16 Score=131.62 Aligned_cols=164 Identities=16% Similarity=0.176 Sum_probs=103.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++.. ......+++..........++ ..+.+|||||..+....... ++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-------~~ 75 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQ--FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQT-------YS 75 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGG-------GT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHH-------HH
Confidence 46999999999999999999999665 233444444444455555666 46799999998765433322 11
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
..+|++++|++++.......-..++..+.+.... ...|+++|+||+|+.+....+.++. +++....
T Consensus 76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~--------~~~~~~~--- 141 (181)
T 3t5g_A 76 --IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMERVISYEEG--------KALAESW--- 141 (181)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHHHH--------HHHHHHT---
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcceecHHHH--------HHHHHHh---
Confidence 5899999998876422112223355555554332 1269999999999975555544432 1222211
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021699 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
++|++.+++. ++.+ +.++++.+...+...
T Consensus 142 --------~~~~~~~Sa~----~~~~-----------v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 142 --------NAAFLESSAK----ENQT-----------AVDVFRRIILEAEKM 170 (181)
T ss_dssp --------TCEEEECCTT----SHHH-----------HHHHHHHHHHHHHTC
T ss_pred --------CCcEEEEecC----CCCC-----------HHHHHHHHHHHHHHh
Confidence 1466666653 3332 788888888777654
No 34
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.73 E-value=8.2e-17 Score=131.51 Aligned_cols=124 Identities=15% Similarity=0.082 Sum_probs=67.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+||+++|.+|+|||||+|++++.......+..+++.. .....++ ..+.+|||||..+....... ++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-------~~- 70 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGRWLPGH-------CM- 70 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccchhhhhh-------hh-
Confidence 48999999999999999999998775444444443332 2233343 47899999998543322221 12
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++..........++..+.+... ....|+++|+||+|+.+....+.+
T Consensus 71 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~ 127 (166)
T 3q72_A 71 -AMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVD 127 (166)
T ss_dssp ---CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHH
T ss_pred -hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccccccCHH
Confidence 588999999888643211222334445544321 122799999999999765554443
No 35
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.73 E-value=2.5e-16 Score=134.08 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=81.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++... .....+..+.......+.+++ ..+.||||||..+....... .+
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~---~~---- 90 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTA---YY---- 90 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCC-CCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHH---HH----
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHH---Hh----
Confidence 469999999999999999999998764 233344445555555666677 57999999998554333222 12
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++++..........++..+....... .|+++|+||+|+.
T Consensus 91 --~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~ 138 (213)
T 3cph_A 91 --RGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDME 138 (213)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTC--SEEEEEEECTTCS
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCc
Confidence 58999999988764221122245666666654432 6999999999983
No 36
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.73 E-value=1e-18 Score=164.60 Aligned_cols=257 Identities=18% Similarity=0.260 Sum_probs=127.6
Q ss_pred hccccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCC-----CCCCCeeEEEEe--
Q 021699 10 EWMGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF-----QSEGPRPVMVSR-- 82 (309)
Q Consensus 10 ~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~-----~~~t~~~~~~~~-- 82 (309)
..+++.+++...... .....-.|+|+|+|++|+|||||+|.|+|......+.. ...|........
T Consensus 10 ~~l~~~~l~~~y~~~--------~vl~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~ 81 (418)
T 2qag_C 10 GYVGFANLPNQVYRK--------SVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLI 81 (418)
T ss_dssp -----CCCCCCTTTT--------TCC-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-
T ss_pred CcEEEEecceeECCE--------EEecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEE
Confidence 457788887775421 11222358999999999999999999999764222210 011111111111
Q ss_pred eeCCe--EEEEEeCCCCCCCCCCc---HHHHHHH----HHh-----------hhcCCCcEEEEEEeCCccccChhHHHHH
Q 021699 83 SRAGF--TLNIVDTPGLIEGGYVN---YHAIQLI----KRF-----------LLNKTIDVLLYVDRLDVYRVDNLDKQIT 142 (309)
Q Consensus 83 ~~~g~--~l~liDTPG~~~~~~~~---~~~~~~i----~~~-----------~~~~~~d~il~v~~~d~~~~~~~d~~~l 142 (309)
...+. .++++||||++...... ....+.+ ..+ +.++.+|+|||++...++++++.+..++
T Consensus 82 q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~l 161 (418)
T 2qag_C 82 KEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFM 161 (418)
T ss_dssp -----CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHH
T ss_pred ecCCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHH
Confidence 22232 68999999997642111 1111111 111 2345678899995554446888888788
Q ss_pred HHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCC
Q 021699 143 RAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNEND 222 (309)
Q Consensus 143 ~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~ 222 (309)
+.+.. ..++|+|+||+|+..+.+ ...+ .+.+++.+... +++++..++. ++.+.
T Consensus 162 k~L~~------~v~iIlVinK~Dll~~~e--v~~~----k~~i~~~~~~~-----------~i~~~~~sa~----~~~~v 214 (418)
T 2qag_C 162 KRLHE------KVNIIPLIAKADTLTPEE--CQQF----KKQIMKEIQEH-----------KIKIYEFPET----DDEEE 214 (418)
T ss_dssp HHHTT------TSEEEEEEESTTSSCHHH--HHHH----HHHHHHHHHHH-----------TCCCCCCC-----------
T ss_pred HHHhc------cCcEEEEEEcccCccHHH--HHHH----HHHHHHHHHHc-----------CCeEEeCCCC----CCcCH
Confidence 77753 268999999999863321 1111 13333333322 2444433321 12111
Q ss_pred cccCCCCCCchHHHHHHHHHHHhcCCCcceeccccccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhhhcccchh
Q 021699 223 EKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVW 302 (309)
Q Consensus 223 ~~~l~~~~~w~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 302 (309)
+. -...+...+++++.++...+..++..+++|. |+||...+...-++-|..+...+.+.+-.|+++.-...|
T Consensus 215 ~~-------~~~~l~~~iPfavv~s~~~~~~~g~~vr~R~-y~wg~i~Ven~~h~df~~Lr~~Li~~~~~dl~~~T~~~~ 286 (418)
T 2qag_C 215 NK-------LVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQ-YPWGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVH 286 (418)
T ss_dssp -----------------CCEEECC-------------CEE-CSSCEECC--CCSSTTTHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HH-------HHHHHHhhCCcceeecceeEecCCceeeccc-ccceEEEecchhhCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 11 1345556677777766666666677788888 999999999999999998666688888889888765543
Q ss_pred --hhhhccC
Q 021699 303 --ARASRRL 309 (309)
Q Consensus 303 --~~~~~~~ 309 (309)
.||.++|
T Consensus 287 Ye~yR~~~l 295 (418)
T 2qag_C 287 YENYRSRKL 295 (418)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 4666554
No 37
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.73 E-value=2.4e-16 Score=133.87 Aligned_cols=126 Identities=18% Similarity=0.147 Sum_probs=83.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++... .....+..+.........+++. .+.||||||..+....... ++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-------~~ 78 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTY-TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSS-------YY 78 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCC-CTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGG-------GG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHH-------hc
Confidence 469999999999999999999998764 2233344444444445556654 7999999998654433221 12
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++..........++..+...... ..|+++|+||+|+.+......+
T Consensus 79 --~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~ 134 (206)
T 2bcg_Y 79 --RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS--TVLKLLVGNKCDLKDKRVVEYD 134 (206)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCHH
T ss_pred --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccccccCHH
Confidence 6889999998876422112223456666555433 2689999999999755444443
No 38
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.73 E-value=3.4e-16 Score=131.64 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=97.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-------------------------------
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG------------------------------- 86 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g------------------------------- 86 (309)
..++|+|+|.+|+|||||+|+|++... .....+..+.........+++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTF-HENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCC-CSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcC-CCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 469999999999999999999998863 222223333333333444443
Q ss_pred --------eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEE
Q 021699 87 --------FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL 158 (309)
Q Consensus 87 --------~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~i 158 (309)
..+.||||||..+..... ..++ ..+|++++|++++..........++..+....+ .|++
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~----~pii 151 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIV-------PLYY--RGATCAIVVFDISNSNTLDRAKTWVNQLKISSN----YIII 151 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTH-------HHHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----CEEE
T ss_pred cccCccceeEEEEEECCCcHHHHHHH-------HHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----CcEE
Confidence 689999999975433221 1222 589999999887542211222345666655543 7999
Q ss_pred EEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHH
Q 021699 159 IVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVK 238 (309)
Q Consensus 159 iV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~ 238 (309)
+|+||+| ......+.++. +++.... ++|++.+++. ++.+ +.+|++
T Consensus 152 lv~NK~D-~~~~~~~~~~~--------~~~~~~~-----------~~~~~~~Sa~----~~~~-----------i~~l~~ 196 (208)
T 3clv_A 152 LVANKID-KNKFQVDILEV--------QKYAQDN-----------NLLFIQTSAK----TGTN-----------IKNIFY 196 (208)
T ss_dssp EEEECTT-CC-CCSCHHHH--------HHHHHHT-----------TCEEEEECTT----TCTT-----------HHHHHH
T ss_pred EEEECCC-cccccCCHHHH--------HHHHHHc-----------CCcEEEEecC----CCCC-----------HHHHHH
Confidence 9999999 43334444433 2222221 2577777763 3332 677777
Q ss_pred HHHHHHh
Q 021699 239 TITEVVL 245 (309)
Q Consensus 239 ~i~~~~~ 245 (309)
.+...+.
T Consensus 197 ~l~~~~~ 203 (208)
T 3clv_A 197 MLAEEIY 203 (208)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666554
No 39
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.73 E-value=1.1e-16 Score=131.64 Aligned_cols=127 Identities=16% Similarity=0.110 Sum_probs=74.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|+|++.......+..+.+ .......+++. .+.+|||||...... .. ....++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~--~~~~~~ 75 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGED--VYERTLTVDGEDTTLVVVDTWEAEKLDK---SW--SQESCL 75 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSS--EEEEEEEETTEEEEEEEECCC----------CH--HHHHTT
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccc--eeEEEEEECCEEEEEEEEecCCCCccch---hh--hHHhhc
Confidence 4699999999999999999999998754444433333 23334455554 689999999854211 11 111222
Q ss_pred hcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++... +. ....++..+.+... ....|+++|+||+|+.+....+.+
T Consensus 76 --~~~~~~i~v~d~~~~~s~~-~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~~~ 132 (175)
T 2nzj_A 76 --QGGSAYVIVYSIADRGSFE-SASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVSVE 132 (175)
T ss_dssp --TSCSEEEEEEETTCHHHHH-HHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHH
T ss_pred --ccCCEEEEEEECCCHHHHH-HHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccCHH
Confidence 5789999998886422 21 22345555544321 112799999999999755554443
No 40
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.73 E-value=3.6e-16 Score=129.94 Aligned_cols=129 Identities=19% Similarity=0.174 Sum_probs=83.3
Q ss_pred cCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHH
Q 021699 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIK 112 (309)
Q Consensus 35 ~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~ 112 (309)
.....++|+++|.+|+|||||+|+|++... .....+++..........++. .+.+|||||..+.......+ +
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~---~- 87 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIF--VDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQY---M- 87 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHH---H-
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHH---H-
Confidence 345679999999999999999999997643 233333444444445556665 45679999985544333222 2
Q ss_pred HhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 113 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 113 ~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++.......-..++..+.+.... ...|+++|+||+|+.+....+.+
T Consensus 88 -----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~v~~~ 144 (183)
T 3kkq_A 88 -----RTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRKVTRD 144 (183)
T ss_dssp -----HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTCCSCHH
T ss_pred -----hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCCchhccCcCHH
Confidence 3689999998886432112223455555554332 12689999999999755554444
No 41
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.73 E-value=5e-18 Score=151.36 Aligned_cols=237 Identities=16% Similarity=0.204 Sum_probs=141.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccC-------CCCCCC-eeEEEEeeeCC--eEEEEEeCCCCCCCCCC---cH
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVST-------FQSEGP-RPVMVSRSRAG--FTLNIVDTPGLIEGGYV---NY 105 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~-------~~~~t~-~~~~~~~~~~g--~~l~liDTPG~~~~~~~---~~ 105 (309)
.++++|+|++|+|||||+|.|+|......+. .+.... ....+.....+ ..++++|+||++..... .+
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 4899999999999999999999864322221 111111 11221122222 26899999999763221 11
Q ss_pred HHHHHHH----H----hh--------hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 106 HAIQLIK----R----FL--------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 106 ~~~~~i~----~----~~--------~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
...+.+. . .+ ...++++++++++...+.+++.|.++++.+.+. .++|+|+||+|...+
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH
Confidence 2222111 1 11 123579999997655567899998888888754 589999999998743
Q ss_pred CCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHH-HHHHHHHhcCC
Q 021699 170 DRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLV-KTITEVVLNGS 248 (309)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~-~~i~~~~~~~~ 248 (309)
++ ...+ ...+++.+... +++++.... +... .+.. . -...+. +.+++++.++.
T Consensus 156 ~e--~~~~----k~~i~~~l~~~-----------~i~i~~~~~----~~~~-~~~~----~-~~~~~~~~~~pfavv~s~ 208 (270)
T 3sop_A 156 EE--KSEF----KQRVRKELEVN-----------GIEFYPQKE----FDED-LEDK----T-ENDKIRQESMPFAVVGSD 208 (270)
T ss_dssp HH--HHHH----HHHHHHHHHHT-----------TCCCSSCSC----C----CHHH----H-HHHHHHHTTCSEECCCCC
T ss_pred HH--HHHH----HHHHHHHHHHc-----------CccccCCCC----CCcc-hHHH----H-HHHHHHhcCCCeEEEecc
Confidence 21 1111 23333333322 133321100 0000 0000 0 011222 46778888888
Q ss_pred CcceeccccccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhhhcccchh--hhhhccC
Q 021699 249 KALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVW--ARASRRL 309 (309)
Q Consensus 249 ~~~~~~~~~~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 309 (309)
..+..++..+++|. |+||...+...-+|.|..+...+.+..-.|+++.-...| .||.+||
T Consensus 209 ~~~~~~g~~~~~r~-y~wg~~~v~n~~h~df~~lr~~l~~~~~~~l~~~t~~~~ye~~r~~~l 270 (270)
T 3sop_A 209 KEYQVNGKRVLGRK-TPWGIIEVENLNHCEFALLRDFVIRTHLQDLKEVTHNIHYETYRAKRL 270 (270)
T ss_dssp CEEEETTEEEEEEC-CCC-CEESSCTTTCSHHHHHHHHHTTTHHHHHHHHHHTHHHHHHHHHC
T ss_pred eEEEeCCcEEEEee-cCceEEEeCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888889999999 999999999999999999777899999999988765443 3676665
No 42
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.73 E-value=1.1e-16 Score=132.01 Aligned_cols=126 Identities=14% Similarity=0.119 Sum_probs=82.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.+++|+|+|.+|+|||||+|+|++... .....+..+.+........++ ..+.+|||||..+...... ..+
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~---~~~---- 84 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP---SYI---- 84 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSH---HHH----
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHH---HHh----
Confidence 459999999999999999999997653 222333444445455555666 4789999999744322221 112
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++..........++..+....+.. .|+++|+||+|+.++...+.+
T Consensus 85 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~ 140 (179)
T 2y8e_A 85 --RDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTE 140 (179)
T ss_dssp --HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECGGGGGGCCSCHH
T ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccccCcCCHH
Confidence 47899999988754221122345666665554433 689999999999655444443
No 43
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.73 E-value=3.6e-16 Score=130.23 Aligned_cols=118 Identities=19% Similarity=0.158 Sum_probs=78.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeE--EEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT--LNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~--l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.+++|+++|.+|+|||||+|+|++... .....+++..........++.. +.+|||||..+.......+ +
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---~---- 73 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQY---M---- 73 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSC--CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHH---H----
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHH---H----
Confidence 469999999999999999999998763 3344455555555555566654 7789999986544433322 2
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++++.......-..++..+...... ...|+++|+||+|+.
T Consensus 74 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 74 --RTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS-EDVPMVLVGNKCDLP 122 (189)
T ss_dssp --HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTSS
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccCc
Confidence 3689999998886432112233455555554332 237999999999986
No 44
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.72 E-value=5.3e-16 Score=126.31 Aligned_cols=126 Identities=16% Similarity=0.181 Sum_probs=80.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++... .....+++..........++ ..+.+|||||..+.. .. ...++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---~~----~~~~~ 73 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA---AI----RDNYF 73 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH---HH----HHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhH---HH----HHHHh
Confidence 469999999999999999999998763 23333444444444445555 478999999974321 11 12222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++..........++..+.+.... ...|+++|+||+|+.+....+.+
T Consensus 74 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~ 130 (168)
T 1u8z_A 74 --RSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVE 130 (168)
T ss_dssp --HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCSCHH
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccccCccCHH
Confidence 4789999998876422112234455666555431 12799999999999654444443
No 45
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=6.7e-17 Score=136.02 Aligned_cols=164 Identities=16% Similarity=0.090 Sum_probs=98.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcc-cccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAV-TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~-~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
..++|+|+|.+|+|||||+|+|++.... ...+..+.+...........+..+.||||||..+...... .++
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~- 93 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAP-------MYY- 93 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTH-------HHH-
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhH-------Hhh-
Confidence 4699999999999999999999987632 1222222222222222223456899999999744322221 122
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccccc
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMK 196 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 196 (309)
..+|++++|++++..........++..+.+..... .|+++|+||+|+.+....+.++. +++....
T Consensus 94 -~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~~~v~~~~~--------~~~~~~~---- 158 (192)
T 2fg5_A 94 -RGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPEN--IVMAIAGNKCDLSDIREVPLKDA--------KEYAESI---- 158 (192)
T ss_dssp -TTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHHH--------HHHHHTT----
T ss_pred -ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccccCHHHH--------HHHHHHc----
Confidence 58899999988754221122345666666553222 69999999999964444443332 2222211
Q ss_pred ccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhc
Q 021699 197 KKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246 (309)
Q Consensus 197 ~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~ 246 (309)
++|++.+++. ++.+ +.+|++.+...+..
T Consensus 159 -------~~~~~~~Sa~----~~~g-----------i~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 159 -------GAIVVETSAK----NAIN-----------IEELFQGISRQIPP 186 (192)
T ss_dssp -------TCEEEECBTT----TTBS-----------HHHHHHHHHHTCC-
T ss_pred -------CCEEEEEeCC----CCcC-----------HHHHHHHHHHHHHh
Confidence 2577777653 3332 78888888776543
No 46
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=1.9e-16 Score=129.61 Aligned_cols=164 Identities=18% Similarity=0.105 Sum_probs=96.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
+.++|+++|.+|+|||||+|+|++.... .. ..++...........++ ..+.+|||||..+.. ... ..++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~-~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~---~~~----~~~~ 72 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFR-ES-YIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP---AMQ----RLSI 72 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCC-SS-CCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH---HHH----HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC-CC-CCCCccccEEEEEEECCEEEEEEEEECCCchhhH---HHH----HHhc
Confidence 4699999999999999999999987532 11 11222222222233333 478999999985422 111 1222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
..+|++++|++++..........++..+.+..+.....|+++|+||+|+.+......++. .++....
T Consensus 73 --~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~--------~~~~~~~--- 139 (172)
T 2erx_A 73 --SKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEA--------EALARTW--- 139 (172)
T ss_dssp --HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHH--------HHHHHHH---
T ss_pred --ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHH--------HHHHHHh---
Confidence 368999999887642211223445666665543222379999999999865544433222 1111111
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhc
Q 021699 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~ 246 (309)
++|++.+++. ++.+ +.+|++.+...+..
T Consensus 140 --------~~~~~~~Sa~----~~~g-----------i~~l~~~l~~~~~~ 167 (172)
T 2erx_A 140 --------KCAFMETSAK----LNHN-----------VKELFQELLNLEKR 167 (172)
T ss_dssp --------TCEEEECBTT----TTBS-----------HHHHHHHHHHTCCS
T ss_pred --------CCeEEEecCC----CCcC-----------HHHHHHHHHHHHhh
Confidence 1566666653 3332 78888888776544
No 47
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.72 E-value=3e-16 Score=129.93 Aligned_cols=162 Identities=12% Similarity=0.055 Sum_probs=99.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++..... ...+..+.........+. +..+.||||||..+...... .++
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~ 82 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAP-------MYY 82 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTT-TSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTH-------HHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-cCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhH-------HHh
Confidence 46999999999999999999999876422 222233333333344444 34799999999743222211 122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
..+|++++|++++..........++..+...... ..|+++|+||+|+.+....+.++. +++....
T Consensus 83 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~--------~~~~~~~--- 147 (181)
T 2efe_B 83 --RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP--NMVMALAGNKSDLLDARKVTAEDA--------QTYAQEN--- 147 (181)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCHHHH--------HHHHHHT---
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCcccccccCCHHHH--------HHHHHHc---
Confidence 5899999998875422113334566666665432 268999999999975554444332 2222211
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021699 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
++|++.+++. ++.+ +.+|++.+...+.
T Consensus 148 --------~~~~~~~Sa~----~g~g-----------i~~l~~~l~~~~~ 174 (181)
T 2efe_B 148 --------GLFFMETSAK----TATN-----------VKEIFYEIARRLP 174 (181)
T ss_dssp --------TCEEEECCSS----SCTT-----------HHHHHHHHHHTCC
T ss_pred --------CCEEEEEECC----CCCC-----------HHHHHHHHHHHHH
Confidence 2577766653 3332 7888888776654
No 48
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.72 E-value=1.9e-16 Score=130.05 Aligned_cols=120 Identities=17% Similarity=0.271 Sum_probs=79.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
.+++|+++|.+|+|||||+|+|++... .++..++.|.........+++..+.+|||||+.+...... .......++..
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI-DEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSS-SCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSH-HHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCe-eccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcch-hHHHHHHHHhc
Confidence 358999999999999999999998753 4555666666665656667888999999999976432221 11112233332
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++... . .....++..+.+. ..|+++|+||+|+.
T Consensus 80 ~~~~~~i~v~D~~~--~-~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 80 EKPDLVVNIVDATA--L-ERNLYLTLQLMEM-----GANLLLALNKMDLA 121 (165)
T ss_dssp HCCSEEEEEEETTC--H-HHHHHHHHHHHHT-----TCCEEEEEECHHHH
T ss_pred CCCCEEEEEecCCc--h-hHhHHHHHHHHhc-----CCCEEEEEEchHhc
Confidence 47899999977653 2 2233345444432 27999999999984
No 49
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.72 E-value=2.6e-18 Score=155.58 Aligned_cols=237 Identities=16% Similarity=0.178 Sum_probs=122.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCC------CCCC--eeEEEEeeeCC--eEEEEEeCCCCCCCC------
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ------SEGP--RPVMVSRSRAG--FTLNIVDTPGLIEGG------ 101 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~------~~t~--~~~~~~~~~~g--~~l~liDTPG~~~~~------ 101 (309)
-.++|+|+|++|+|||||+|+|+|...+..+..+ ..+. ....+.....+ ..++++||||+++..
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 3599999999999999999999987433322211 0111 11112222233 478999999995421
Q ss_pred -CCcHHHH----HHHHHh-------hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 102 -YVNYHAI----QLIKRF-------LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 102 -~~~~~~~----~~i~~~-------~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
...+... ..++.. +...+++++||++.+..++++..+.++++.+.. . .++++|+||+|+..+
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~----~--~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHN----K--VNIVPVIAKADTLTL 170 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTT----T--SCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHh----c--CCEEEEEEeCCCCCH
Confidence 1111000 111111 123456788888665544587777655554432 1 589999999998632
Q ss_pred CCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCc-hHHHHHHHHHHHhcCC
Q 021699 170 DRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW-IPNLVKTITEVVLNGS 248 (309)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w-~~~L~~~i~~~~~~~~ 248 (309)
++. ....+.+++.+... +++++.+++. ++ +.+..+ .+ ...+.+.+++++.++.
T Consensus 171 -----~e~-~~~~~~~~~~~~~~-----------~~~~~e~Sa~----~~-~v~e~f----~~l~~~i~~~~p~avigs~ 224 (301)
T 2qnr_A 171 -----KER-ERLKKRILDEIEEH-----------NIKIYHLPDA----ES-DEDEDF----KEQTRLLKASIPFSVVGSN 224 (301)
T ss_dssp -----HHH-HHHHHHHHHHHHHT-----------TCCCCCCC--------------C----HHHHHHHHTTCSEECCCCC
T ss_pred -----HHH-HHHHHHHHHHHHHc-----------CCeEEecCCc----cc-cccHHH----HHHHHHhhcCCCceEECCC
Confidence 111 11112333333321 2455444442 22 211111 01 1222334455555665
Q ss_pred CcceeccccccCCCCCCCCcccccHHHHHHHHHHhhhhHHHHhHhhhhcccchh--hhhhcc
Q 021699 249 KALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVW--ARASRR 308 (309)
Q Consensus 249 ~~~~~~~~~~~~~~p~~~g~~~~~l~~~~q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 308 (309)
..+..++..+++|. |+||...+...-+|.|..+...+. .+-.|+++.-...| .||.++
T Consensus 225 ~~~~~~g~~~~~r~-y~wg~~~v~n~~h~df~~lr~~l~-~~~~~l~~~t~~~~ye~~r~~~ 284 (301)
T 2qnr_A 225 QLIEAKGKKVRGRL-YPWGVVEVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSER 284 (301)
T ss_dssp CBCC-----CBEEE-ETTEEEETTCTTTCSHHHHHHHHH-HTHHHHHHHHHHTHHHHHHHHH
T ss_pred ceEecCCcEEeeEc-CCCceEeeCCCccCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777888888 999999999999999999777787 88888887654333 355544
No 50
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.72 E-value=5.2e-16 Score=126.23 Aligned_cols=125 Identities=16% Similarity=0.107 Sum_probs=78.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.+++|+++|.+|+|||||+|++++.... ....+++..........++. .+.+|||||..+.. .. ...++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---~~----~~~~~ 72 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA---SM----RDLYI 72 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH---HH----HHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCc--ccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH---HH----HHHHh
Confidence 4699999999999999999999987632 22333333333444555554 58999999974422 11 11222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
..+|++++|++++.......-..++..+.+.... ...|+++|+||+|+.+......
T Consensus 73 --~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~ 128 (167)
T 1kao_A 73 --KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESEREVSS 128 (167)
T ss_dssp --HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGGCCSCH
T ss_pred --ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCcccccccCCH
Confidence 4679999998876421112223445555554331 2379999999999865444433
No 51
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.72 E-value=2.1e-16 Score=129.14 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=77.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
+++|+++|.+|+|||||+|++++.... ....+..+.........+++ ..+.+|||||..+.... . ..++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~---~----~~~~- 73 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFA-ENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASL---A----PXYY- 73 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG---H----HHHH-
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhh---h----hhhh-
Confidence 589999999999999999999987632 22223333333333444444 47899999997432211 1 2222
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
..+|++++|++++..........++..+....+.. .|+++|+||+|+.+.
T Consensus 74 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 74 -RNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD--IIIALVGNKIDXLQE 123 (170)
T ss_dssp -TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGS
T ss_pred -ccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcccc
Confidence 68999999988764321122334566666554333 689999999998654
No 52
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.72 E-value=2.5e-16 Score=135.84 Aligned_cols=163 Identities=12% Similarity=0.106 Sum_probs=101.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..+||+|+|.+|||||||++++++... .....+..+.+........++ ..+.||||+|..+....... +.
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f-~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~-------~~ 83 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPS-------YI 83 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC-C----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHH-------HH
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCC-CCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHH-------Hh
Confidence 459999999999999999999997653 222223333333344444444 46789999998654433222 22
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
.++|++++|++++.......-..++..+....+.+ .|+++|+||+|+......+.++.. .+.+.+
T Consensus 84 --~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~--~piilVgNK~Dl~~~r~V~~~e~~-----~~a~~~------ 148 (216)
T 4dkx_A 84 --RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGE-----RKAKEL------ 148 (216)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGGCCSCHHHHH-----HHHHHH------
T ss_pred --ccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCC--CeEEEEeeccchHhcCcccHHHHh-----hHHHHh------
Confidence 68999999999875332233355777777776654 689999999999766666665432 222222
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhc
Q 021699 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~ 246 (309)
+++++.+|+. ++.+ +.++++.|...+..
T Consensus 149 --------~~~~~e~SAk----tg~n-----------V~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 149 --------NVMFIETSAK----AGYN-----------VKQLFRRVAAALPG 176 (216)
T ss_dssp --------TCEEEEEBTT----TTBS-----------HHHHHHHHHHHC--
T ss_pred --------CCeeEEEeCC----CCcC-----------HHHHHHHHHHHHHh
Confidence 1466666663 4443 78888887776643
No 53
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.72 E-value=1.7e-16 Score=129.52 Aligned_cols=125 Identities=16% Similarity=0.098 Sum_probs=78.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.+++|+++|.+|+|||||+|++++... .....+++..........+ +..+.+|||||..+...... ..+
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~---~~~---- 72 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRD---LYM---- 72 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHH---HHH----
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHH---HHh----
Confidence 468999999999999999999998653 2222233333333333344 34789999999855432221 122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
..+|++++|++++.......-..++..+.+.... ...|+++|+||+|+.+....+.
T Consensus 73 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~ 128 (167)
T 1c1y_A 73 --KNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDERVVGK 128 (167)
T ss_dssp --HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGGCCSCH
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECccccccccCCH
Confidence 3689999998876422112223455556554331 2279999999999965444333
No 54
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.71 E-value=1.7e-16 Score=132.10 Aligned_cols=126 Identities=16% Similarity=0.108 Sum_probs=81.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++.... ....+..+..........++ ..+.+|||||..+. ......++
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~ 80 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFK-DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF-------RSVTRSYY 80 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH-------HHHHHHHH
Confidence 4699999999999999999999987642 22223333334444455566 57899999997321 11222222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++.......-..++..+...... ..|+++|+||+|+.+....+.+
T Consensus 81 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~ 136 (186)
T 2bme_A 81 --RGAAGALLVYDITSRETYNALTNWLTDARMLASQ--NIVIILCGNKKDLDADREVTFL 136 (186)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHH
T ss_pred --hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccCHH
Confidence 6899999998876422112223455556555433 2699999999999644444433
No 55
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.71 E-value=2e-16 Score=130.72 Aligned_cols=115 Identities=14% Similarity=0.093 Sum_probs=81.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
..++|+++|.+|+|||||+|+|++... .....++.+.........+++..+.+|||||..+...... . ..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~--~~ 76 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKV-TEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRA-------R--GA 76 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCS-SCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCC-------S--SC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc-ccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHH-------H--HH
Confidence 579999999999999999999998764 3334444555554555677888999999999865443321 1 12
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|++++|++++. .......+.+..+.. . ..|+++|+||+|+.+
T Consensus 77 ~~~d~~i~v~d~~~-~~~~~~~~~l~~~~~---~--~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 77 QVTDIVILVVAADD-GVMPQTVEAINHAKA---A--NVPIIVAINKMDKPE 121 (178)
T ss_dssp CCCCEEEEEEETTC-CCCHHHHHHHHHHGG---G--SCCEEEEEETTTSSC
T ss_pred hhCCEEEEEEECCC-CCcHHHHHHHHHHHh---C--CCCEEEEEECccCCc
Confidence 68999999988754 233444444443322 2 269999999999864
No 56
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.71 E-value=5.5e-16 Score=129.86 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=80.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++..... ...+..+........... +..+.||||||..+...... .++
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~~ 92 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTP-AFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITT-------AYY 92 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGG-------GGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC-CcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHH-------Hhc
Confidence 35999999999999999999999876422 222222333333333333 45789999999865443322 122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
..+|++++|++++..........++..+....... .|+++|+||+|+.+......
T Consensus 93 --~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~ 147 (189)
T 2gf9_A 93 --RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDN--AQVILVGNKCDLEDERVVPA 147 (189)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCH
T ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccCCCH
Confidence 68999999988754221122345666666553222 69999999999965444333
No 57
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.71 E-value=3.8e-16 Score=132.14 Aligned_cols=127 Identities=16% Similarity=0.174 Sum_probs=83.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+|+|.+|+|||||+|+|++... .....+++..........++. .+.||||||..+.. .. ...+
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~----~~~~ 82 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA---AI----RDNY 82 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH---HH----HHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH---HH----HHHH
Confidence 4579999999999999999999998763 333444444444445556664 78999999985432 11 1122
Q ss_pred hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
+ ..+|++++|++++..........++..+...... ...|+++|+||+|+.+....+.+
T Consensus 83 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~ 140 (206)
T 2bov_A 83 F--RSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVE 140 (206)
T ss_dssp H--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTCGGGCCSCHH
T ss_pred H--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeccCccccccccHH
Confidence 2 3789999998876432112234456666655431 12799999999999654444444
No 58
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.71 E-value=4.9e-16 Score=130.47 Aligned_cols=126 Identities=15% Similarity=0.087 Sum_probs=81.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++...... ..+..+..........++ ..+.||||||..+.......+ +
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---~---- 91 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY---Y---- 91 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHH---H----
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHH---h----
Confidence 469999999999999999999998764222 222333334444455555 478999999986544333221 2
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++.......-..++..+....... .|+++|+||+|+.+....+.+
T Consensus 92 --~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~ 147 (191)
T 2a5j_A 92 --RGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLESRRDVKRE 147 (191)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCCccccCHH
Confidence 58999999988764221122234666665543322 689999999999654444433
No 59
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.71 E-value=1.8e-16 Score=133.11 Aligned_cols=126 Identities=16% Similarity=0.108 Sum_probs=78.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+|+|.+|+|||||+|+|++....... .+..+.......... .+..+.||||||..+....... .+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---~~--- 95 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS-RTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSA---YY--- 95 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSC-CCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHH---HH---
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHH---Hh---
Confidence 34699999999999999999999987643222 122222222223333 3457899999999654333221 12
Q ss_pred hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021699 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
..+|++++|++++.......-..++..+..... ...|+++|+||+|+.+......
T Consensus 96 ---~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~ 150 (193)
T 2oil_A 96 ---RGAVGALLVFDLTKHQTYAVVERWLKELYDHAE--ATIVVMLVGNKSDLSQAREVPT 150 (193)
T ss_dssp ---TTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSC--TTCEEEEEEECGGGGGGCCSCH
T ss_pred ---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECCCcccccccCH
Confidence 689999999887542111122345555544322 2368999999999965444333
No 60
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.71 E-value=2e-16 Score=129.22 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=77.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.+++|+++|.+|+|||||+|+|++....... .+..+..........+ +..+.+|||||..+.... . ..++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~---~----~~~~ 76 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQ-ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL---A----PMYY 76 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTC-CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG---H----HHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhh---h----HHhc
Confidence 4699999999999999999999986542211 1222222222233333 458999999997432211 1 1122
Q ss_pred hcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++... + .....++..+....... .|+++|+||+|+.+....+.+
T Consensus 77 --~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~--~~iilv~nK~Dl~~~~~~~~~ 132 (170)
T 1r2q_A 77 --RGAQAAIVVYDITNEESF-ARAKNWVKELQRQASPN--IVIALSGNKADLANKRAVDFQ 132 (170)
T ss_dssp --TTCSEEEEEEETTCHHHH-HHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHH
T ss_pred --cCCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCCC--CcEEEEEECccCccccccCHH
Confidence 6899999998876422 2 22234556665554332 689999999998654444333
No 61
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.71 E-value=8.9e-16 Score=126.57 Aligned_cols=126 Identities=17% Similarity=0.127 Sum_probs=80.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++..... ...+..+..........++ ..+.+|||||..+. .......+
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---~~~~~~~~---- 85 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMA-DCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF---RAVTRSYY---- 85 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-SCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT---CHHHHHHH----
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCeEEEEEEEECCCChHh---hhhHHHHh----
Confidence 46999999999999999999999876422 1122222233333344444 47899999997432 22222222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++..........++..+....... .|+++|+||+|+.+....+.+
T Consensus 86 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~ 141 (179)
T 1z0f_A 86 --RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEAQRDVTYE 141 (179)
T ss_dssp --HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH
T ss_pred --ccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHH
Confidence 48899999988764321122345666666554332 689999999999654444433
No 62
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.71 E-value=3.8e-16 Score=139.06 Aligned_cols=120 Identities=18% Similarity=0.228 Sum_probs=89.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
.++|+++|.+|+|||||+|+|+|... .++..++.|.........+++..+.+|||||+.+........ ...+.++...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~-~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDE-LIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHH-HHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHH-HHHHHhhhcc
Confidence 58999999999999999999999875 777888888888888888899999999999998754433221 1234455567
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++|++++|++... . .....+...+.+. +. .|+++|+||+|+.
T Consensus 81 ~~d~vi~v~D~~~--~-~~~~~~~~~~~~~-~~---~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 81 NADVIVDIVDSTC--L-MRNLFLTLELFEM-EV---KNIILVLNKFDLL 122 (271)
T ss_dssp CCSEEEEEEEGGG--H-HHHHHHHHHHHHT-TC---CSEEEEEECHHHH
T ss_pred CCcEEEEEecCCc--c-hhhHHHHHHHHhc-CC---CCEEEEEEChhcC
Confidence 9999999966542 2 2223333333332 21 6999999999975
No 63
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.71 E-value=8.5e-17 Score=154.23 Aligned_cols=156 Identities=23% Similarity=0.311 Sum_probs=110.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCC-CCCCCc-----HHHHHHHH
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI-EGGYVN-----YHAIQLIK 112 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~-~~~~~~-----~~~~~~i~ 112 (309)
.++|+++|.+|+|||||+|+|++.+...+++.+++|.++....+.++|.++.||||||+. +..... ......+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~- 321 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI- 321 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH-
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh-
Confidence 489999999999999999999998877788899999998888888899999999999997 543221 1222333
Q ss_pred HhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccc
Q 021699 113 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPS 192 (309)
Q Consensus 113 ~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~ 192 (309)
..+|++|+|++++. ..+..+.++++.+ . .+|+++|+||+|+.+. .+.++ +++....
T Consensus 322 -----~~aD~vl~VvD~s~-~~s~~~~~il~~l----~---~~piivV~NK~DL~~~--~~~~~--------~~~~~~~- 377 (482)
T 1xzp_A 322 -----EKADIVLFVLDASS-PLDEEDRKILERI----K---NKRYLVVINKVDVVEK--INEEE--------IKNKLGT- 377 (482)
T ss_dssp -----HHCSEEEEEEETTS-CCCHHHHHHHHHH----T---TSSEEEEEEECSSCCC--CCHHH--------HHHHHTC-
T ss_pred -----hcccEEEEEecCCC-CCCHHHHHHHHHh----c---CCCEEEEEECcccccc--cCHHH--------HHHHhcC-
Confidence 47899999987653 3345555555443 1 2799999999998532 23322 2222211
Q ss_pred ccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021699 193 TWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 193 ~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
..|++.+|+. ++.+ +++|++.+...+.
T Consensus 378 -----------~~~~i~iSAk----tg~G-----------i~eL~~~l~~~~~ 404 (482)
T 1xzp_A 378 -----------DRHMVKISAL----KGEG-----------LEKLEESIYRETQ 404 (482)
T ss_dssp -----------STTEEEEEGG----GTCC-----------HHHHHHHHHHHTH
T ss_pred -----------CCcEEEEECC----CCCC-----------HHHHHHHHHHHHh
Confidence 1577777763 4443 7888887777644
No 64
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.71 E-value=9.7e-16 Score=127.26 Aligned_cols=127 Identities=16% Similarity=0.174 Sum_probs=82.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+|+|.+|+|||||+|+|++... .....+++..........++. .+.||||||..+.. .. ...+
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~----~~~~ 86 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA---AI----RDNY 86 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH---HH----HHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH---HH----HHHH
Confidence 3569999999999999999999998763 333344444444444555554 78999999975421 11 1222
Q ss_pred hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
+ ..+|++++|++++..........++..+...... ...|+++|+||+|+.+....+.+
T Consensus 87 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~ 144 (187)
T 2a9k_A 87 F--RSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVE 144 (187)
T ss_dssp H--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGGCCSCHH
T ss_pred h--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccCccCHH
Confidence 2 4789999998876422112234455666655432 12799999999998654444433
No 65
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.71 E-value=7.2e-17 Score=134.25 Aligned_cols=126 Identities=14% Similarity=0.176 Sum_probs=62.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++... .....++.+.+.......+++ ..+.||||||..+..... ..++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~ 78 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAF-NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT-------TAYY 78 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------C-------CTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhH-------HHHH
Confidence 369999999999999999999997653 222223333344444555666 579999999974432111 1122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++...-...-..++..+....... .|+++|+||+|+.+....+.+
T Consensus 79 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~ 134 (183)
T 2fu5_C 79 --RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDKRQVSKE 134 (183)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSCCCSCHH
T ss_pred --hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccCCccCcCCHH
Confidence 58999999988764211122234666666553322 699999999999655444443
No 66
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.71 E-value=2.9e-16 Score=133.12 Aligned_cols=126 Identities=17% Similarity=0.112 Sum_probs=77.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++.... ....+..+..........++ ..+.||||||..+...... .++
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~-------~~~ 95 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFK-QDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTR-------SYY 95 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCH-------HHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-ccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHH-------HHh
Confidence 4699999999999999999999987642 22233334444444555666 5899999999743222221 122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++.......-..++..+....... .|+++|+||+|+......+.+
T Consensus 96 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~v~~~ 151 (200)
T 2o52_A 96 --RGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLDPEREVTFL 151 (200)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTT--CEEEEEEECGGGGGGCCSCHH
T ss_pred --ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcccccccCHH
Confidence 58999999988764221122234555565544322 689999999998644444443
No 67
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.71 E-value=1.4e-15 Score=123.44 Aligned_cols=119 Identities=21% Similarity=0.146 Sum_probs=76.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.+++|+++|.+|+|||||+|++++... .....+++..........++. .+.+|||||..+... .....+
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~~~~~~---- 72 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHF--VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA---MRDQYM---- 72 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCH---HHHHHH----
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcC--ccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhH---HHHHhh----
Confidence 358999999999999999999998753 222333333333444445554 578999999854322 111122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|++++|++++.......-..++..+...... ...|+++|+||+|+.+
T Consensus 73 --~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 73 --RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAA 122 (166)
T ss_dssp --HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhh
Confidence 3689999998876422112224455666555431 1279999999999864
No 68
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.70 E-value=9.6e-16 Score=128.25 Aligned_cols=121 Identities=19% Similarity=0.174 Sum_probs=75.7
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 021699 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKR 113 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~ 113 (309)
+..+++|+++|.+|+|||||+|+|++... .....+++..........++. .+.||||||..+.... ...
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~ 88 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAM-------RDQ 88 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------------
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCC--ccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHH-------HHH
Confidence 45679999999999999999999998753 233334444444445555554 5899999997432211 112
Q ss_pred hhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 114 ~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
++ ..+|++++|++++..........++..+...... ...|+++|+||+|+.+
T Consensus 89 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 89 YM--RTGEGFLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPT 140 (190)
T ss_dssp -C--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred hh--CcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCc
Confidence 22 5899999998876432112223455555554331 1279999999999864
No 69
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.70 E-value=7.9e-17 Score=154.30 Aligned_cols=161 Identities=19% Similarity=0.205 Sum_probs=86.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH-hhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKR-FLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~-~~~ 116 (309)
+.++|+++|.+|+|||||+|+|++.+.+.+++.+++|.+.......++|.++.||||||+.+.....+.. .++. ...
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~--gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHE--GIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC----------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHH--HHHHHHhh
Confidence 4689999999999999999999999877788889999988888888899999999999996643222111 0111 112
Q ss_pred cCCCcEEEEEEeCCccccCh----hHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccc
Q 021699 117 NKTIDVLLYVDRLDVYRVDN----LDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPS 192 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~----~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~ 192 (309)
...+|++|+|++.+. ..+. .+..+++.+ . ..|+++|+||+|+.+.... + .+.+.+. .
T Consensus 310 ~~~aD~vl~VvD~s~-~~s~~~~~~~~~~l~~l----~---~~piIvV~NK~Dl~~~~~~--~------~~~l~~~---~ 370 (476)
T 3gee_A 310 MAEADLILYLLDLGT-ERLDDELTEIRELKAAH----P---AAKFLTVANKLDRAANADA--L------IRAIADG---T 370 (476)
T ss_dssp CSSCSEEEEEEETTT-CSSGGGHHHHHHHHHHC----T---TSEEEEEEECTTSCTTTHH--H------HHHHHHH---H
T ss_pred cccCCEEEEEEECCC-CcchhhhHHHHHHHHhc----C---CCCEEEEEECcCCCCccch--h------HHHHHhc---C
Confidence 368999999988754 2333 233333332 2 2799999999998644321 1 0112221 0
Q ss_pred ccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHh
Q 021699 193 TWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 245 (309)
Q Consensus 193 ~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~ 245 (309)
..|++.+++. ++.+ +++|++.+...+.
T Consensus 371 -----------~~~~i~vSAk----tg~G-----------I~eL~~~i~~~~~ 397 (476)
T 3gee_A 371 -----------GTEVIGISAL----NGDG-----------IDTLKQHMGDLVK 397 (476)
T ss_dssp -----------TSCEEECBTT----TTBS-----------HHHHHHHHTHHHH
T ss_pred -----------CCceEEEEEC----CCCC-----------HHHHHHHHHHHHh
Confidence 0366766663 4433 8899998888776
No 70
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=134.85 Aligned_cols=164 Identities=13% Similarity=0.147 Sum_probs=98.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~--~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++.... ....+++.......... .+..+.||||||..+....... ++
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-------~~ 93 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYS-------FI 93 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGG-------GT
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHH-------HH
Confidence 5799999999999999999999987643 22223333222333333 3467899999998665443322 11
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
..+|++++|++++.......-..++..+....+. ...|+++|+||+|+.+....+.++. ..+.+..
T Consensus 94 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~-----~~~~~~~------ 159 (201)
T 3oes_A 94 --IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGK-TRVPVVLVGNKADLSPEREVQAVEG-----KKLAESW------ 159 (201)
T ss_dssp --TTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHHHH-----HHHHHHH------
T ss_pred --hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccCccccccCHHHH-----HHHHHHh------
Confidence 5899999998876422112223444444433221 1269999999999875555444332 1111111
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021699 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
++|++.+++. ++.+ +.++++.+...+...
T Consensus 160 --------~~~~~~~Sa~----~~~~-----------v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 160 --------GATFMESSAR----ENQL-----------TQGIFTKVIQEIARV 188 (201)
T ss_dssp --------TCEEEECCTT----CHHH-----------HHHHHHHHHHHHHHC
T ss_pred --------CCeEEEEeCC----CCCC-----------HHHHHHHHHHHHHhh
Confidence 1577766653 3322 778888877776544
No 71
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.70 E-value=6.6e-16 Score=126.46 Aligned_cols=126 Identities=16% Similarity=0.105 Sum_probs=74.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCC-CcHHHHHHHHHhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGY-VNYHAIQLIKRFL 115 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~-~~~~~~~~i~~~~ 115 (309)
.++|+++|.+|+|||||+|++++....... .+..+..........++ ..+.+|||||..+... .... .+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~---~~---- 73 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH-EMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDH---CL---- 73 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC--------CH---HH----
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc-cCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhh---hh----
Confidence 489999999999999999999986542222 22334444455555665 4678999999965322 1111 11
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++.......-..++..+...... ...|+++|+||+|+.+....+.+
T Consensus 74 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~ 130 (169)
T 3q85_A 74 --QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLE 130 (169)
T ss_dssp --HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGGCCSCHH
T ss_pred --ccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhcccCCHH
Confidence 3689999998886532112223455555554331 12799999999998655444444
No 72
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.70 E-value=6e-16 Score=130.23 Aligned_cols=125 Identities=16% Similarity=0.169 Sum_probs=77.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++.... ....+..+.........+++ ..+.||||||..+. ... ...++
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---~~~----~~~~~ 96 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFC-EACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF---NSI----TSAYY 96 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG---HHH----HHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCC-cCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH---HHH----HHHHh
Confidence 4699999999999999999999987642 22223333344444555565 47899999997321 111 22222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
..+|++++|++++.......-..++..+....... .|+++|+||+|+.+....+.
T Consensus 97 --~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilV~NK~Dl~~~~~v~~ 151 (192)
T 2il1_A 97 --RSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETDREITR 151 (192)
T ss_dssp --HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCH
T ss_pred --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCH
Confidence 47899999988764221122234556665553322 68999999999865444433
No 73
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.70 E-value=8.2e-16 Score=130.53 Aligned_cols=126 Identities=13% Similarity=0.133 Sum_probs=79.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+|+|.+|+|||||+|+|++... .....+..+.........+++ ..+.||||||..+. . .....+
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---~----~~~~~~ 98 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAF-SERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF---R----TITQSY 98 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGGG---H----HHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCC-CCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhH---H----HHHHHH
Confidence 3469999999999999999999998763 222222223334444555666 48999999997321 1 112223
Q ss_pred hhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 115 LLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
+ ..+|++++|++++.. ++ ..-..++..+....... .|+++|+||+|+......+.+
T Consensus 99 ~--~~~d~iilv~D~~~~~s~-~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~v~~~ 155 (201)
T 2hup_A 99 Y--RSANGAILAYDITKRSSF-LSVPHWIEDVRKYAGSN--IVQLLIGNKSDLSELREVSLA 155 (201)
T ss_dssp H--TTCSEEEEEEETTBHHHH-HTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH
T ss_pred H--hhCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCCC--CCEEEEEECCccccccccCHH
Confidence 3 689999999887642 22 22235666666654332 689999999999654444443
No 74
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.69 E-value=2e-16 Score=150.38 Aligned_cols=119 Identities=20% Similarity=0.325 Sum_probs=80.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC--CCcHHHHHHHHHhhhcC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG--YVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~--~~~~~~~~~i~~~~~~~ 118 (309)
+|+++|++|||||||+|+|++...+.+++.+++|++.......++|..+.||||||+.... ...+.+......++ .
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~--~ 80 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI--R 80 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH--T
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHH--H
Confidence 7999999999999999999999877788899999888888888999999999999996421 12233333333333 6
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++|++|+|++... +++..+..+.+.+.+. + +|+++|+||+|+.
T Consensus 81 ~ad~il~V~D~~~-~~~~~d~~i~~~l~~~-~----~p~ilv~NK~D~~ 123 (439)
T 1mky_A 81 EADLVLFVVDGKR-GITKEDESLADFLRKS-T----VDTILVANKAENL 123 (439)
T ss_dssp TCSEEEEEEETTT-CCCHHHHHHHHHHHHH-T----CCEEEEEESCCSH
T ss_pred hCCEEEEEEECCC-CCCHHHHHHHHHHHHc-C----CCEEEEEeCCCCc
Confidence 8999999977643 4677777777666553 2 7999999999973
No 75
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.69 E-value=6.8e-16 Score=133.08 Aligned_cols=165 Identities=13% Similarity=0.112 Sum_probs=100.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++..... ...+..+.......+.+++ ..+.||||||..+....... ++
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~ 83 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNM-DSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSA-------YY 83 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGG-------GT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHH-------Hh
Confidence 45999999999999999999999876422 2223334444444555666 57899999998654433221 11
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
..+|++++|++++..........++..+....... .|+++|+||+|+.+....+.++. .++....
T Consensus 84 --~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~~~--------~~~~~~~--- 148 (223)
T 3cpj_B 84 --RGAVGALIVYDISKSSSYENCNHWLSELRENADDN--VAVGLIGNKSDLAHLRAVPTEES--------KTFAQEN--- 148 (223)
T ss_dssp --TTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGGCCSCHHHH--------HHHHHHT---
T ss_pred --ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccccccCHHHH--------HHHHHHc---
Confidence 58999999987754221122234566665543322 68999999999965444443322 1222111
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCC
Q 021699 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGS 248 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~ 248 (309)
+++++.+++. ++.+ +.+|++.+...+....
T Consensus 149 --------~~~~~~~Sa~----~~~g-----------i~~l~~~l~~~i~~~~ 178 (223)
T 3cpj_B 149 --------QLLFTETSAL----NSEN-----------VDKAFEELINTIYQKV 178 (223)
T ss_dssp --------TCEEEECCCC-----CCC-----------HHHHHHHHHHHHTTCC
T ss_pred --------CCEEEEEeCC----CCCC-----------HHHHHHHHHHHHHHHh
Confidence 2567666653 3332 7888888887776553
No 76
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=2.8e-15 Score=125.28 Aligned_cols=165 Identities=8% Similarity=0.005 Sum_probs=96.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
...++|+++|.+|+|||||+|++++.......+..+ .......+++..+.+|||||..+....... ++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~- 81 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG----SNVEEIVINNTRFLMWDIGGQESLRSSWNT-------YY- 81 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSC----SSCEEEEETTEEEEEEECCC----CGGGHH-------HH-
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCc----cceEEEEECCEEEEEEECCCCHhHHHHHHH-------Hh-
Confidence 357999999999999999999999876432222222 222344567899999999999554333221 12
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021699 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
.++|++++|++++.. ++... ..++..+.+... ....|+++|+||+|+... .+.++ +.+.+... .+
T Consensus 82 -~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~--------i~~~~~~~-~~ 147 (187)
T 1zj6_A 82 -TNTEFVIVVVDSTDRERISVT-REELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAE--------ISQFLKLT-SI 147 (187)
T ss_dssp -TTCCEEEEEEETTCTTTHHHH-HHHHHHHHTSGG-GTTCEEEEEEECTTSTTC--CCHHH--------HHHHHTGG-GC
T ss_pred -cCCCEEEEEEeCCCHHHHHHH-HHHHHHHHhchh-hCCCeEEEEEECCCCcCC--CCHHH--------HHHHhChh-hh
Confidence 689999999887542 23222 234444433211 123799999999998632 22222 22222211 01
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021699 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
....++++.+++. ++.+ +.+|++.+...+...
T Consensus 148 -----~~~~~~~~~~Sa~----~g~g-----------i~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 148 -----KDHQWHIQACCAL----TGEG-----------LCQGLEWMMSRLKIR 179 (187)
T ss_dssp -----CSSCEEEEECBTT----TTBT-----------HHHHHHHHHHHHCC-
T ss_pred -----cCCCcEEEEccCC----CCcC-----------HHHHHHHHHHHHHHH
Confidence 1123567766653 3333 788888888776544
No 77
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.69 E-value=3.8e-16 Score=139.35 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=84.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~ 118 (309)
.++|+++|.+|+|||||+|+|+|... .+++.+++|.......+.. +..+.+|||||..+......+ ....+.++...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~-e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPE-AKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHH-HHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChH-HHHHHHHHhcC
Confidence 58999999999999999999999863 5777888888777766665 778999999999765432211 12234455446
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+|++++|++.+. . .....+...+.+. ..|+++|+||+|+.
T Consensus 80 ~~d~vi~V~D~t~--~-e~~~~~~~~l~~~-----~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 80 RADSILNVVDATN--L-ERNLYLTTQLIET-----GIPVTIALNMIDVL 120 (272)
T ss_dssp CCSEEEEEEEGGG--H-HHHHHHHHHHHHT-----CSCEEEEEECHHHH
T ss_pred CCCEEEEEecCCc--h-HhHHHHHHHHHhc-----CCCEEEEEEChhhC
Confidence 8999999966542 2 2223344444431 27999999999985
No 78
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.69 E-value=1.4e-15 Score=126.88 Aligned_cols=127 Identities=21% Similarity=0.281 Sum_probs=79.9
Q ss_pred HHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 021699 28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 107 (309)
Q Consensus 28 ~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~ 107 (309)
++.++.......++|+++|.+|+|||||+|++.+.......+..+ .......+++..+.+|||||.... .
T Consensus 5 ~~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g----~~~~~~~~~~~~l~i~Dt~G~~~~---~--- 74 (181)
T 1fzq_A 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQG----FNIKSVQSQGFKLNVWDIGGQRKI---R--- 74 (181)
T ss_dssp HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT----EEEEEEEETTEEEEEEECSSCGGG---H---
T ss_pred HHHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC----eEEEEEEECCEEEEEEECCCCHHH---H---
Confidence 344555544567999999999999999999999886433222222 223345567889999999997421 1
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 108 IQLIKRFLLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 108 ~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
.....++ ..+|++++|++++.. ++... ..++..+.+..+ ....|+++|+||+|+.+.
T Consensus 75 -~~~~~~~--~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 75 -PYWRSYF--ENTDILIYVIDSADRKRFEET-GQELTELLEEEK-LSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp -HHHHHHH--TTCSEEEEEEETTCGGGHHHH-HHHHHHHTTCGG-GTTCCEEEEEECTTSTTC
T ss_pred -HHHHHHh--CCCCEEEEEEECcCHHHHHHH-HHHHHHHHhChh-hcCCCEEEEEECcCcccC
Confidence 1122222 689999999887542 22222 223332222111 123799999999998643
No 79
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.69 E-value=6.5e-16 Score=126.60 Aligned_cols=117 Identities=14% Similarity=0.144 Sum_probs=75.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
..++|+++|.+|+|||||+|++++.... ...+ |.........+++..+.+|||||..+.... ...++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-------~~~~~-- 72 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV--TTIP--TIGFNVETVTYKNLKFQVWDLGGLTSIRPY-------WRCYY-- 72 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC--CCCC--CSSEEEEEEEETTEEEEEEEECCCGGGGGG-------GGGGC--
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--CcCC--cCccceEEEEECCEEEEEEECCCChhhhHH-------HHHHh--
Confidence 4699999999999999999999987642 2222 333444456677899999999998432211 11222
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
..+|++++|++++.. ++...+ .++..+..... ....|+++|+||+|+.+.
T Consensus 73 ~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 73 SNTDAVIYVVDSCDRDRIGISK-SELVAMLEEEE-LRKAILVVFANKQDMEQA 123 (171)
T ss_dssp TTCSEEEEEEETTCCTTHHHHH-HHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred ccCCEEEEEEECCCHHHHHHHH-HHHHHHHhchh-hCCCEEEEEEECCCCcCC
Confidence 589999999887542 232222 23333322111 123799999999998643
No 80
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.69 E-value=8.7e-16 Score=129.18 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=79.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+++|.+|+|||||+|++++... .....+++..........++. .+.||||||..+...... .+
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~ 91 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRP-------LS 91 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGG-------GG
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhH-------hh
Confidence 3569999999999999999999998763 223333333333334455554 569999999744332221 11
Q ss_pred hhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 115 LLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
..++|++++|++++.. ++......++..+...... .|+++|+||+|+.+.
T Consensus 92 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 92 --YADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT---AKTVLVGLKVDLRKD 142 (194)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTT---SEEEEEEECGGGCCT
T ss_pred --ccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhhccC
Confidence 2689999999887642 2322234566666655332 699999999998643
No 81
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.69 E-value=1.4e-15 Score=127.34 Aligned_cols=127 Identities=12% Similarity=0.116 Sum_probs=81.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++..... ...+..+..........++ ..+.||||||..+... .....++
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~~ 91 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPD-RTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK------SMVQHYY 91 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCS-SCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHT------TTHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhh------hhhHHHh
Confidence 56999999999999999999999876422 2223333344444555555 4799999999632110 1122222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
..+|++++|++++..........++..+.+.... ...|+++|+||+|+.+....+.
T Consensus 92 --~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~ 147 (189)
T 1z06_A 92 --RNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLRSAIQVPT 147 (189)
T ss_dssp --TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCGGGCCSCH
T ss_pred --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccceeCH
Confidence 6899999998876421112234466666665421 2379999999999965444333
No 82
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.69 E-value=1.1e-15 Score=127.64 Aligned_cols=167 Identities=19% Similarity=0.258 Sum_probs=106.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
..+++|+++|.+|+|||||+|+|++... .++..+++|..........++..+.+|||||..+....... ......++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSID-EIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHH-HHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHH-HHHHHHHHh
Confidence 3568999999999999999999999763 55666777777777777888999999999999765322211 111222333
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccccc
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMK 196 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 196 (309)
...+|++++|++.. .+ .....++..+.+ . ..|+++|+||+|+........ ..+.+.+.+
T Consensus 83 ~~~~~~~i~v~d~~--~~-~~~~~~~~~~~~---~--~~piilv~nK~Dl~~~~~~~~------~~~~~~~~~------- 141 (188)
T 2wjg_A 83 NEKPDLVVNIVDAT--AL-ERNLYLTLQLME---M--GANLLLALNKMDLAKSLGIEI------DVDKLEKIL------- 141 (188)
T ss_dssp HHCCSEEEEEEEGG--GH-HHHHHHHHHHHT---T--TCCEEEEEECHHHHHHTTCCC------CHHHHHHHH-------
T ss_pred ccCCCEEEEEecch--hH-HHHHHHHHHHHh---c--CCCEEEEEEhhhccccccchH------HHHHHHHHh-------
Confidence 24689999996654 22 223334444433 1 268999999999843222110 011222222
Q ss_pred ccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCC
Q 021699 197 KKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGS 248 (309)
Q Consensus 197 ~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~ 248 (309)
+++++.+++. ++.+ +.+|++.+...+.+..
T Consensus 142 -------~~~~~~~Sa~----~~~~-----------v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 142 -------GVKVVPLSAA----KKMG-----------IEELKKAISIAVKDKK 171 (188)
T ss_dssp -------TSCEEECBGG----GTBS-----------HHHHHHHHHHHHTTC-
T ss_pred -------CCCeEEEEec----CCCC-----------HHHHHHHHHHHHHhcc
Confidence 1467766653 3332 7899998888876653
No 83
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.69 E-value=1.6e-15 Score=128.12 Aligned_cols=118 Identities=19% Similarity=0.151 Sum_probs=77.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+++|.+|+|||||+|++++.. ......+++..........++. .+.||||||..+....... +
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~ 88 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPL-------C 88 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGG-------G
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHh-------h
Confidence 357999999999999999999999876 2334445555555555666665 5779999999665443221 1
Q ss_pred hhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 115 LLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+ .++|++++|++++.. ++......++..+..... ..|+++|+||+|+.+
T Consensus 89 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 89 Y--TNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLRE 138 (201)
T ss_dssp G--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGG
T ss_pred c--CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhh
Confidence 2 689999999887642 222222346666666543 279999999999863
No 84
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.69 E-value=2.4e-15 Score=126.06 Aligned_cols=126 Identities=14% Similarity=0.163 Sum_probs=79.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+++|.+|+|||||+|++++... .....+++..........++ ..+.||||||....... . ..+
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~---~~~--- 89 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRF--ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-E---RYL--- 89 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-H---HHH---
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-H---HHH---
Confidence 3569999999999999999999998762 23333444433333444444 46889999998654332 1 122
Q ss_pred hhcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCc-cccCcEEEEEecccCCCCCCCCHH
Q 021699 115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~-~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++... +. .-..++..+...... ....|+++|+||+|+......+.+
T Consensus 90 ---~~~~~~ilv~d~~~~~s~~-~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~ 148 (187)
T 3c5c_A 90 ---NWAHAFLVVYSVDSRQSFD-SSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKA 148 (187)
T ss_dssp ---TTCSEEEEEEETTCHHHHH-HHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHH
T ss_pred ---hhCCEEEEEEECCCHHHHH-HHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHH
Confidence 5799999998887432 32 223456666554311 112799999999999644444443
No 85
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.69 E-value=2.6e-15 Score=123.77 Aligned_cols=165 Identities=18% Similarity=0.163 Sum_probs=100.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++... .....+..+.........+++. .+.+|||||..+. ......++
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~ 77 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF-------RSLRTPFY 77 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCC-CC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG-------HHHHGGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh-------hhhHHHHH
Confidence 469999999999999999999998753 2222333333444445556664 7899999997321 11122222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCc--cccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccc
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPST 193 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~--~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 193 (309)
..+|++++|++++.......-..++..+...... ....|+++|+||+|+. ......++. +++....
T Consensus 78 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~--------~~~~~~~- 145 (177)
T 1wms_A 78 --RGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEA--------QAWCRDN- 145 (177)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHH--------HHHHHHT-
T ss_pred --hcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHH--------HHHHHhc-
Confidence 6899999998876432112224566666655431 1236999999999986 333333322 2222211
Q ss_pred cccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhc
Q 021699 194 WMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246 (309)
Q Consensus 194 ~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~ 246 (309)
..+|++.+++. ++.+ +.++++.+...+..
T Consensus 146 ---------~~~~~~~~Sa~----~~~g-----------i~~l~~~l~~~~~~ 174 (177)
T 1wms_A 146 ---------GDYPYFETSAK----DATN-----------VAAAFEEAVRRVLA 174 (177)
T ss_dssp ---------TCCCEEECCTT----TCTT-----------HHHHHHHHHHHHHT
T ss_pred ---------CCceEEEEeCC----CCCC-----------HHHHHHHHHHHHHh
Confidence 12577777653 3333 78888888777654
No 86
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=1.1e-15 Score=128.49 Aligned_cols=167 Identities=17% Similarity=0.104 Sum_probs=99.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+++|.+|+|||||+|+|++..... ...++...........++ ..+.||||||..+.. ... ..+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~----~~~ 76 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRD--TYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP---AMQ----RLS 76 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCC--TTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH---HHH----HHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCC--cccCccccceeEEEEECCEEEEEEEEeCCChHHhH---HHH----HHh
Confidence 356999999999999999999999865321 111222222222233343 478999999974322 111 122
Q ss_pred hhcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccc
Q 021699 115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPST 193 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 193 (309)
+ ..+|++++|++++... +. ....++..+.+..+.....|+++|+||+|+.+ .....++. .++....
T Consensus 77 ~--~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~--------~~~~~~~- 143 (199)
T 2gf0_A 77 I--SKGHAFILVFSVTSKQSLE-ELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREA--------QAVAQEW- 143 (199)
T ss_dssp H--HHCSEEEEEEETTCHHHHH-TTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHH--------HHHHHHH-
T ss_pred h--ccCCEEEEEEECcCHHHHH-HHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHH--------HHHHHHh-
Confidence 2 4689999998876422 22 22345555665544322379999999999864 33333322 1111111
Q ss_pred cccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcCCCc
Q 021699 194 WMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKA 250 (309)
Q Consensus 194 ~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~~~~ 250 (309)
+++++.+++. ++.+ +.+|++.+...+......
T Consensus 144 ----------~~~~~~~Sa~----~~~g-----------i~~l~~~l~~~~~~~~~~ 175 (199)
T 2gf0_A 144 ----------KCAFMETSAK----MNYN-----------VKELFQELLTLETRRNMS 175 (199)
T ss_dssp ----------TCEEEECBTT----TTBS-----------HHHHHHHHHHHCSSSCEE
T ss_pred ----------CCeEEEEecC----CCCC-----------HHHHHHHHHHHHhhhhcc
Confidence 1466666653 3333 789999888877665433
No 87
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=1.2e-15 Score=129.90 Aligned_cols=126 Identities=15% Similarity=0.153 Sum_probs=81.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|+|++... .....+..+.+.......+++. .+.||||||..+. ......++
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~~ 96 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF-------RSITQSYY 96 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHGGGS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHH
Confidence 469999999999999999999998753 2222333334444445556664 7899999997321 11122222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++.......-..++..+....... .|+++|+||+|+......+.+
T Consensus 97 --~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~v~~~ 152 (201)
T 2ew1_A 97 --RSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAERREVSQQ 152 (201)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCSSCHH
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHH
Confidence 68999999988754221112245666666554322 689999999999644444433
No 88
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.69 E-value=8.6e-16 Score=128.12 Aligned_cols=164 Identities=13% Similarity=0.124 Sum_probs=97.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
..++|+++|.+|+|||||+|++++... ....+ |.........+++..+.+|||||..+. ......+ .
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~-------~~~~~~~--~ 83 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDV--DTISP--TLGFNIKTLEHRGFKLNIWDVGGQKSL-------RSYWRNY--F 83 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC--SSCCC--CSSEEEEEEEETTEEEEEEEECCSHHH-------HTTGGGG--C
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC--Ccccc--cCccceEEEEECCEEEEEEECCCCHhH-------HHHHHHH--h
Confidence 579999999999999999999998762 22222 233344455668899999999998321 1111122 2
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccccc
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMK 196 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 196 (309)
.++|++++|++++.. ++.. ...++..+.+... ....|+++|+||+|+.+.. +.++ +.+.+... ..
T Consensus 84 ~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~--~~~~--------~~~~~~~~-~~- 149 (186)
T 1ksh_A 84 ESTDGLIWVVDSADRQRMQD-CQRELQSLLVEER-LAGATLLIFANKQDLPGAL--SCNA--------IQEALELD-SI- 149 (186)
T ss_dssp TTCSEEEEEEETTCGGGHHH-HHHHHHHHHTCGG-GTTCEEEEEEECTTSTTCC--CHHH--------HHHHTTGG-GC-
T ss_pred cCCCEEEEEEECcCHHHHHH-HHHHHHHHHhChh-cCCCcEEEEEeCccCCCCC--CHHH--------HHHHhChh-hc-
Confidence 689999999887542 1221 1233333332211 1237999999999986432 2222 22222211 00
Q ss_pred ccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021699 197 KKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 197 ~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
....+|++.+++. ++.+ +.++++.+...+...
T Consensus 150 ----~~~~~~~~~~Sa~----~~~g-----------i~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 150 ----RSHHWRIQGCSAV----TGED-----------LLPGIDWLLDDISSR 181 (186)
T ss_dssp ----CSSCEEEEECCTT----TCTT-----------HHHHHHHHHHHHHTC
T ss_pred ----cCCceEEEEeeCC----CCCC-----------HHHHHHHHHHHHHhc
Confidence 1123577766653 3332 788888888777554
No 89
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=2.2e-15 Score=126.59 Aligned_cols=117 Identities=19% Similarity=0.157 Sum_probs=80.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++... .....+++..........++ ..+.||||||..+...... .+
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~- 86 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP-------LS- 86 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGG-------GG-
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHH-------Hh-
Confidence 459999999999999999999998753 23333444444444555555 5789999999865433221 11
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
...+|++++|++++.. ++......++..+.+... ..|+++|+||+|+.+
T Consensus 87 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 87 -YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRD 136 (194)
T ss_dssp -CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTT
T ss_pred -cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 2589999999887542 233333356666666533 279999999999864
No 90
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.68 E-value=1.4e-15 Score=126.96 Aligned_cols=126 Identities=17% Similarity=0.095 Sum_probs=78.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeE-EEEeeeC-----------CeEEEEEeCCCCCCCCCCcH
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV-MVSRSRA-----------GFTLNIVDTPGLIEGGYVNY 105 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~-~~~~~~~-----------g~~l~liDTPG~~~~~~~~~ 105 (309)
..++|+|+|.+|+|||||+|+|++... .....+..+.... ....... ...+.+|||||..+. .
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---~- 84 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKF-NSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF---R- 84 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG---H-
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCC-CcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH---H-
Confidence 469999999999999999999998653 1122222222222 2233333 348999999998321 1
Q ss_pred HHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021699 106 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 106 ~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
.....++ ..+|++++|++++.......-..++..+...... ...|+++|+||+|+.+......
T Consensus 85 ---~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~ 147 (195)
T 3bc1_A 85 ---SLTTAFF--RDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS-ENPDIVLCGNKSDLEDQRAVKE 147 (195)
T ss_dssp ---HHHHHTT--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS-SSCCEEEEEECTTCGGGCCSCH
T ss_pred ---HHHHHHH--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccccCH
Confidence 1222233 6899999998875422112224566666554331 2279999999999865444333
No 91
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.68 E-value=7.1e-16 Score=127.51 Aligned_cols=120 Identities=17% Similarity=0.101 Sum_probs=73.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---g~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
..++|+++|.+|+|||||+|++++.... ....+..+..........+ ...+.+|||||..+... ....+
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~ 78 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYS-QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS-------LGVAF 78 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-TTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------CC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCC-cccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhh-------hhHHH
Confidence 5799999999999999999999987632 2222333344444455544 35899999999643211 11122
Q ss_pred hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhC--ccccCcEEEEEecccCC
Q 021699 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLS 167 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g--~~~~~~~iiV~tk~D~~ 167 (309)
+ ..+|++++|++++..........++..+..... .....|+++|+||+|+.
T Consensus 79 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 79 Y--RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp S--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred h--hcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 2 588999999887643211223455666655543 11236999999999985
No 92
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1.8e-15 Score=127.54 Aligned_cols=125 Identities=13% Similarity=0.140 Sum_probs=79.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++.... ....++...........++ ..+.+|||||..+ .......+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~---- 96 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFI--WEYDPTLESTYRHQATIDDEVVSMEILDTAGQED----TIQREGHM---- 96 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC----CHHHHHHH----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC--cccCCCCCceEEEEEEECCEEEEEEEEECCCCCc----ccchhhhh----
Confidence 5699999999999999999999987642 2222233333333344454 4689999999965 22222222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++.......-..++..+...... ...|+++|+||+|+.+....+.+
T Consensus 97 --~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~~~ 153 (196)
T 2atv_A 97 --RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDHSRQVSTE 153 (196)
T ss_dssp --HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGGGCCSCHH
T ss_pred --ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECcccccccccCHH
Confidence 4689999998876422112223455556554321 12689999999999654444443
No 93
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.68 E-value=1.1e-15 Score=127.03 Aligned_cols=117 Identities=17% Similarity=0.110 Sum_probs=78.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++... .....+++..........++. .+.+|||||..+...... .+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~- 73 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRP-------LS- 73 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGG-------GG-
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHH-------Hh-
Confidence 469999999999999999999997653 223333333334444455554 567999999854322211 11
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
...+|++++|++++.. ++......++..+....+ ..|+++|+||+|+.+
T Consensus 74 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 74 -YPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 123 (186)
T ss_dssp -CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHT
T ss_pred -ccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEcccccc
Confidence 2689999999887642 233333356667766543 279999999999863
No 94
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=4.9e-16 Score=130.49 Aligned_cols=127 Identities=13% Similarity=0.121 Sum_probs=80.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccc-cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTV-STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~-~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
..+||+|+|.+|+|||||+|+|++...... .+..+.+...........+..+.||||||... +......++
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~- 93 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER-------YRTITTAYY- 93 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHH-------CHHHHHHHH-
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHH-------HHHHHHHHH-
Confidence 469999999999999999999998653211 11122222333333334567899999999521 111222233
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
..+|++++|++++..........++..+....... .|+++|+||+|+.+......+
T Consensus 94 -~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~ 149 (191)
T 3dz8_A 94 -RGAMGFILMYDITNEESFNAVQDWATQIKTYSWDN--AQVILVGNKCDMEEERVVPTE 149 (191)
T ss_dssp -TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH
T ss_pred -ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHH
Confidence 68999999988764221123345677776654333 699999999998644444333
No 95
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.68 E-value=1.5e-15 Score=128.35 Aligned_cols=118 Identities=19% Similarity=0.166 Sum_probs=71.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++..... ...+..+.........+++ ..+.||||||..+. .... ..++
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---~~~~----~~~~ 98 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRE-NISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF---RSIA----KSYF 98 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEETTEEEEEEEEECTTCTTC---HHHH----HHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCc-cCCCCccceeEEEEEEECCEEEEEEEEECCCCcch---hhhH----HHHH
Confidence 56999999999999999999999876321 1111222222223344444 46999999997432 2111 2222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++++..........++..+....... .|+++|+||+|+.
T Consensus 99 --~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~ 146 (199)
T 2p5s_A 99 --RKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET--VPIMLVGNKADIR 146 (199)
T ss_dssp --HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred --hhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccc
Confidence 47899999988754221122234666665543322 6999999999985
No 96
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.68 E-value=2.7e-16 Score=150.07 Aligned_cols=162 Identities=19% Similarity=0.245 Sum_probs=103.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh-h
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-L 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~-~ 116 (309)
+.++|+++|.+|+|||||+|+|++.+...+++.+++|.+.......++|.++.||||||+.+.....+.. .+++.. .
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~--gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKI--GVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC----------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHH--HHHHHhhh
Confidence 4689999999999999999999998776788888888877666777899999999999996543222111 011111 2
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccccc
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMK 196 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 196 (309)
...+|++++|++.+. ..+..+..+++.+.. +|+++|+||+|+.+..... .+.. +.
T Consensus 301 ~~~aD~vl~VvD~s~-~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~~~~~~--------------~~~~---~~ 355 (462)
T 3geh_A 301 ANTADLVLLTIDAAT-GWTTGDQEIYEQVKH-------RPLILVMNKIDLVEKQLIT--------------SLEY---PE 355 (462)
T ss_dssp CCSCSEEEEEEETTT-CSCHHHHHHHHHHTT-------SCEEEEEECTTSSCGGGST--------------TCCC---CT
T ss_pred hhcCCEEEEEeccCC-CCCHHHHHHHHhccC-------CcEEEEEECCCCCcchhhH--------------HHHH---hc
Confidence 368999999987754 456666666555432 5999999999986432211 1111 10
Q ss_pred ccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021699 197 KKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 197 ~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
...|++.+++. ++.+ +++|++.+...+...
T Consensus 356 ------~~~~~i~iSAk----tg~G-----------i~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 356 ------NITQIVHTAAA----QKQG-----------IDSLETAILEIVQTG 385 (462)
T ss_dssp ------TCCCEEEEBTT----TTBS-----------HHHHHHHHHHHHTTS
T ss_pred ------cCCcEEEEECC----CCCC-----------HHHHHHHHHHHHhcc
Confidence 12577777763 4433 889999988877543
No 97
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.68 E-value=1.9e-15 Score=127.82 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=78.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~--g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.++|+|+|.+|+|||||+|+|++..... ...+..+........... +..+.||||||..+. ......++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~- 78 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTP-AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY-------RTITTAYY- 78 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCS-CCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTG-
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCccceeEEEEEEEECCeEEEEEEEECCCchhh-------cchHHHhh-
Confidence 5899999999999999999999876422 112222222222333344 358899999998321 11222233
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
..+|++++|++++..........++..+...... ..|+++|+||+|+.+......
T Consensus 79 -~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~ 133 (203)
T 1zbd_A 79 -RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVLLVGNKCDMEDERVVSS 133 (203)
T ss_dssp -GGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCS--SCEEEEEEECTTCTTSCCSCH
T ss_pred -cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccCcccccCH
Confidence 5789999998875422112223455666554322 269999999999965444443
No 98
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.68 E-value=1.4e-15 Score=130.33 Aligned_cols=118 Identities=19% Similarity=0.203 Sum_probs=69.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+++|.+|+|||||+|+|++... .....+++..........++. .+.||||||..+...... .+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~-------~~ 102 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAF--PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRP-------LF 102 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC--------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHH-------HH
Confidence 3569999999999999999999998763 222333333444444555554 789999999754322211 12
Q ss_pred hhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 115 LLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+ .++|++++|++++.. ++......++..+..... ..|+++|+||+|+.+
T Consensus 103 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 103 Y--PDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK---KVPIIVVGCKTDLRK 152 (214)
T ss_dssp ----CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECGGGGS
T ss_pred h--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhhc
Confidence 2 589999999887542 232222346666665432 269999999999864
No 99
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1.7e-15 Score=129.01 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=77.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|+|++..... ...+++..........++ ..+.||||||..+....... +
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~- 93 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL-------S- 93 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGG-------G-
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCC--cCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHh-------h-
Confidence 46899999999999999999999876422 222233333333345555 47899999998654432211 1
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
...+|++++|++++.. ++...+..++..+..... ..|+++|+||+|+.+
T Consensus 94 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 143 (207)
T 2fv8_A 94 -YPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP---NVPIILVANKKDLRS 143 (207)
T ss_dssp -CTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGGG
T ss_pred -cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhhhc
Confidence 1589999999888653 243444566767766432 279999999999863
No 100
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.67 E-value=1.3e-15 Score=127.68 Aligned_cols=119 Identities=11% Similarity=0.090 Sum_probs=78.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
..++|+++|.+|+|||||+|+|++...+.... ..|.........+++..+.||||||..+..... ..++
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~-- 88 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI--LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLW-------EHYY-- 88 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC--CCCSSEEEEEEECSSCEEEEEEECCSTTTGGGG-------GGGG--
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCc--CCccceeEEEEEECCEEEEEEECCCCHHHHHHH-------HHHH--
Confidence 56999999999999999999999886323222 233344555667788999999999985433221 1222
Q ss_pred CCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCc-cccCcEEEEEecccCCC
Q 021699 118 KTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~-~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++... +... ..++..+...... ....|+++|+||+|+..
T Consensus 89 ~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 89 KEGQAIIFVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp GGCSEEEEEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred hcCCEEEEEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 5789999998875421 2222 2344444333211 02379999999999963
No 101
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.67 E-value=1.4e-16 Score=150.38 Aligned_cols=124 Identities=21% Similarity=0.298 Sum_probs=85.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~-~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
..++|+|+|.+|+|||||+|+|++.....++..+++|.++......+.+. ++.+|||||+.+.........+....++
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l- 111 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF- 111 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH-
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH-
Confidence 46899999999999999999999998766777888888888777777766 8999999999876544332222222333
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
.++|++|+|++ . ...+.+..++..+.+. + .|+++|+||+|+.....
T Consensus 112 -~~aD~vllVvD--~-~~~~~~~~~l~~l~~~-~----~piIvV~NK~Dl~~~~~ 157 (423)
T 3qq5_A 112 -YRADCGILVTD--S-APTPYEDDVVNLFKEM-E----IPFVVVVNKIDVLGEKA 157 (423)
T ss_dssp -TSCSEEEEECS--S-SCCHHHHHHHHHHHHT-T----CCEEEECCCCTTTTCCC
T ss_pred -hcCCEEEEEEe--C-CChHHHHHHHHHHHhc-C----CCEEEEEeCcCCCCccH
Confidence 68999999954 4 5667778888888765 2 79999999999865443
No 102
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.67 E-value=2e-15 Score=127.89 Aligned_cols=120 Identities=16% Similarity=0.110 Sum_probs=78.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++.... ....+..+.+........++ ..+.||||||..+...... .++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~~ 78 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGV-------AFY 78 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCC-------GGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHH-------HHH
Confidence 5799999999999999999999987642 22223333444444445554 5789999999754332221 122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCc--cccCcEEEEEecccCC
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~--~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++++.......-..++..+...... ....|+++|+||+|+.
T Consensus 79 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 79 --RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred --hCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 5899999998875422112223455555554431 1236999999999986
No 103
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.67 E-value=4.4e-15 Score=125.55 Aligned_cols=165 Identities=13% Similarity=0.040 Sum_probs=101.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|||||||+|++++.... ....+.++.+.......+++. .+.+|||||..+. ..... ..++
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~---~~~~~---~~~~ 94 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGD-SAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA---GGWLR---DHCL 94 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECC-GGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGG---GHHHH---HHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCC-ccCCCCcccceEEEEEEECCEEEEEEEEecCCCccc---hhhhH---HHhh
Confidence 5699999999999999999999875432 223344455555555566665 6788999998432 11111 1122
Q ss_pred hcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccc
Q 021699 116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTW 194 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 194 (309)
..+|++++|++++... +.. -..++..+...... ...|+++|+||+|+.+....+.++.. ++....
T Consensus 95 --~~~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~--------~~a~~~-- 160 (195)
T 3cbq_A 95 --QTGDAFLIVFSVTDRRSFSK-VPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLEEGR--------HLAGTL-- 160 (195)
T ss_dssp --HHCSEEEEEEETTCHHHHHT-HHHHHHHHHHHSTT-SCCCEEEEEECTTCTTTCCSCHHHHH--------HHHHHT--
T ss_pred --ccCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCC-CCCCEEEEeechhccccCCcCHHHHH--------HHHHHh--
Confidence 4789999998886422 222 23455555554321 13799999999999755555444321 111111
Q ss_pred ccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021699 195 MKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 195 ~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
+++++.+++. ++.+ +.++++.+...+...
T Consensus 161 ---------~~~~~e~Sa~----~~~~-----------v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 161 ---------SCKHIETSAA----LHHN-----------TRELFEGAVRQIRLR 189 (195)
T ss_dssp ---------TCEEEEEBTT----TTBS-----------HHHHHHHHHHHHHTT
T ss_pred ---------CCEEEEEcCC----CCCC-----------HHHHHHHHHHHHHHh
Confidence 1466666653 3332 788888887776543
No 104
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.67 E-value=3.4e-15 Score=125.77 Aligned_cols=116 Identities=14% Similarity=0.097 Sum_probs=72.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
..++|+|+|.+|+|||||+|++++..... ..+ |...........+..+.+|||||..+....... .+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---~~------ 94 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNICFTVWDVGGQDKIRPLWRH---YF------ 94 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEE--EEE--ETTEEEEEEEETTEEEEEEECC-----CTTHHH---HH------
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccc--cCC--cCceeEEEEEECCEEEEEEECCCCHhHHHHHHH---Hh------
Confidence 57999999999999999999999876422 222 233334455668889999999998654332221 22
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|++++|++++.. ++... ..++..+..... ....|+++|+||+|+.+
T Consensus 95 ~~~d~iilv~D~~~~~s~~~~-~~~l~~~~~~~~-~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 95 QNTQGLIFVVDSNDRERVQES-ADELQKMLQEDE-LRDAVLLVFANKQDMPN 144 (192)
T ss_dssp HTCCEEEEEEETTCGGGHHHH-HHHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred ccCCEEEEEEECCCHHHHHHH-HHHHHHHhcccc-cCCCeEEEEEECCCCCC
Confidence 488999999887542 22222 233333322111 11379999999999853
No 105
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.67 E-value=1e-15 Score=128.12 Aligned_cols=118 Identities=16% Similarity=0.115 Sum_probs=76.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
..+++|+++|.+|+|||||+|++++..... ..+ |..........++..+.+|||||..+....... ++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~-------~~- 87 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT--TVP--TVGVNLETLQYKNISFEVWDLGGQTGVRPYWRC-------YF- 87 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE--ECS--STTCCEEEEEETTEEEEEEEECCSSSSCCCCSS-------SS-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC--cCC--CCceEEEEEEECCEEEEEEECCCCHhHHHHHHH-------Hh-
Confidence 357999999999999999999998876432 222 222333445667889999999998654333211 11
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
..+|++++|++++.. ++.... .++..+..... ....|+++|+||+|+.+.
T Consensus 88 -~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 88 -SDTDAVIYVVDSTDRDRMGVAK-HELYALLDEDE-LRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp -TTCCEEEEEEETTCCTTHHHHH-HHHHHHHTCST-TTTCEEEEEEECTTSTTC
T ss_pred -hcCCEEEEEEeCCCHHHHHHHH-HHHHHHHhhhh-cCCCeEEEEEECCCCcCC
Confidence 589999999887542 232222 22332222111 123799999999998643
No 106
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.67 E-value=4.7e-16 Score=132.31 Aligned_cols=118 Identities=18% Similarity=0.127 Sum_probs=77.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
.+.++|+++|.+|+|||||+|++++... .....+++..........++. .+.||||||..+...... .+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~ 98 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP-------LS 98 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGG-------GG
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHH-------HH
Confidence 3579999999999999999999997653 333344444444444555555 456999999854332221 11
Q ss_pred hhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 115 LLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..++|++++|++++.. ++......++..+..... ..|+++|+||+|+.+
T Consensus 99 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 148 (204)
T 4gzl_A 99 --YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 148 (204)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECHHHHT
T ss_pred --hccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhcc
Confidence 2689999999887642 232222356666666542 279999999999863
No 107
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=2e-15 Score=126.49 Aligned_cols=164 Identities=16% Similarity=0.103 Sum_probs=97.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++.... ....+..+.........+++ ..+.||||||..+...... ..+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---~~~---- 85 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFD-PELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTP---SYY---- 85 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHH---HHH----
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhH---HHh----
Confidence 4699999999999999999999987632 22222222333333344443 5789999999854433322 122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
..+|++++|++++..........++..+..... ....|+++|+||+|+. ......++. .++....
T Consensus 86 --~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~-~~~~~~~~~--------~~~~~~~--- 150 (195)
T 1x3s_A 86 --RGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKE-NREVDRNEG--------LKFARKH--- 150 (195)
T ss_dssp --TTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSS-SCCSCHHHH--------HHHHHHT---
T ss_pred --ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCc-ccccCHHHH--------HHHHHHc---
Confidence 589999999887542111122344444443322 1236899999999984 333333322 1222211
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021699 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
.++++.+++. ++.+ +.+|++.+...+...
T Consensus 151 --------~~~~~~~Sa~----~~~g-----------i~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 151 --------SMLFIEASAK----TCDG-----------VQCAFEELVEKIIQT 179 (195)
T ss_dssp --------TCEEEECCTT----TCTT-----------HHHHHHHHHHHHHTS
T ss_pred --------CCEEEEecCC----CCCC-----------HHHHHHHHHHHHHhh
Confidence 1566666653 3332 788888888777654
No 108
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.66 E-value=1.8e-15 Score=125.86 Aligned_cols=118 Identities=9% Similarity=0.039 Sum_probs=75.7
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
....++|+++|.+|+|||||+|+|++.......+..+.+. ....+++..+.+|||||..+..... ..++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~ 86 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV----EEIVINNTRFLMWDIGGQESLRSSW-------NTYY 86 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSC----EEEEETTEEEEEEEESSSGGGTCGG-------GGGG
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceee----EEEEECCEEEEEEECCCCHhHHHHH-------HHHh
Confidence 3457999999999999999999999987533333333222 2445678999999999985432221 1222
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++.. ++.. ...++..+.+... ....|+++|+||+|+..
T Consensus 87 --~~~d~ii~v~D~~~~~s~~~-~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 87 --TNTEFVIVVVDSTDRERISV-TREELYKMLAHED-LRKAGLLIFANKQDVKE 136 (181)
T ss_dssp --TTCCEEEEEEETTCTTTHHH-HHHHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred --ccCCEEEEEEECCCHHHHHH-HHHHHHHHHhChh-hCCCeEEEEEECCCccc
Confidence 689999999887542 1222 2233333332211 12379999999999853
No 109
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.66 E-value=2.8e-15 Score=122.04 Aligned_cols=114 Identities=14% Similarity=0.147 Sum_probs=73.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 119 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~ 119 (309)
+||+++|.+|+|||||+|++++.... ...+ |...........+..+.+|||||..+. . .....++ .+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~---~----~~~~~~~--~~ 67 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI---R----PLWRHYF--QN 67 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS--CCCC--CSSCCEEEEECSSCEEEEEECCCCGGG---H----HHHHHHT--TT
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC--cccC--cCceeEEEEEECCEEEEEEEcCCChhh---H----HHHHHHh--cc
Confidence 58999999999999999999976632 2222 222333445567889999999998431 1 1122222 68
Q ss_pred CcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 120 IDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 120 ~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+|++++|++++.. ++... ..++..+..... ....|+++|+||+|+.+
T Consensus 68 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 68 TQGLIFVVDSNDRERVNEA-REELMRMLAEDE-LRDAVLLVFANKQDLPN 115 (164)
T ss_dssp CSEEEEEEETTCGGGHHHH-HHHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred CCEEEEEEECCCHHHHHHH-HHHHHHHHhchh-hcCCeEEEEEECcCCcC
Confidence 9999999887542 12222 223333322111 12369999999999853
No 110
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.66 E-value=1.9e-15 Score=126.70 Aligned_cols=117 Identities=14% Similarity=0.133 Sum_probs=74.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
..++|+|+|.+|+|||||+|+|++.... .... .|...........+..+.||||||..+. ......++
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~--~t~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~-- 88 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN-EDMI--PTVGFNMRKITKGNVTIKLWDIGGQPRF-------RSMWERYC-- 88 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCC--CCCSEEEEEEEETTEEEEEEEECCSHHH-------HTTHHHHH--
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC-CccC--CCCceeEEEEEeCCEEEEEEECCCCHhH-------HHHHHHHH--
Confidence 5699999999999999999999987642 1111 2222233345667889999999997321 11122233
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|++++|++++.. ++... ..++..+.+... ....|+++|+||+|+..
T Consensus 89 ~~~d~ii~v~D~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 89 RGVSAIVYMVDAADQEKIEAS-KNELHNLLDKPQ-LQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp TTCSEEEEEEETTCGGGHHHH-HHHHHHHHTCGG-GTTCCEEEEEECTTSTT
T ss_pred ccCCEEEEEEECCCHHHHHHH-HHHHHHHHhCcc-cCCCCEEEEEECCCCcc
Confidence 689999999887542 22221 223333322211 12379999999999864
No 111
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.66 E-value=1.8e-15 Score=127.28 Aligned_cols=122 Identities=11% Similarity=0.077 Sum_probs=76.3
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
.....+|+|+|.+|+|||||+|+|++.....+...+ |...........+..+.||||||..+..... ..++
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~ 84 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA--TVGYNVETFEKGRVAFTVFDMGGAKKFRGLW-------ETYY 84 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC--CSSEEEEEEEETTEEEEEEEECCSGGGGGGG-------GGGC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc--ccceeEEEEEeCCEEEEEEECCCCHhHHHHH-------HHHH
Confidence 346799999999999999999999998753322222 2223344456778899999999984432211 1222
Q ss_pred hcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCc------cccCcEEEEEecccCCCC
Q 021699 116 LNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGE------QIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~------~~~~~~iiV~tk~D~~~~ 169 (309)
.++|++|+|++++... +... ..++..+...... ....|+++|+||+|+...
T Consensus 85 --~~~d~ii~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 85 --DNIDAVIFVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp --TTCSEEEEEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred --hcCCEEEEEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 6899999998876422 3222 2333333322110 013799999999998643
No 112
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.66 E-value=3.9e-15 Score=137.83 Aligned_cols=125 Identities=16% Similarity=0.236 Sum_probs=88.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH-HH-HHHHHHh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY-HA-IQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~-~~-~~~i~~~ 114 (309)
...++|+++|.+|+|||||+|+|++.. ..++..+.+|...........+..+.+|||||+.+...... .. ...+..+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 457899999999999999999999987 35566677777776666667788999999999976432211 11 1122211
Q ss_pred hhcCCCcEEEEEEeCCcc-ccC-hhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 115 LLNKTIDVLLYVDRLDVY-RVD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~-~~~-~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
...+|++|+|++++.. .++ .....++..+...++ ..|+++|+||+|+.
T Consensus 244 --~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~ 293 (357)
T 2e87_A 244 --RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVA 293 (357)
T ss_dssp --GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTC
T ss_pred --HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccC
Confidence 2468999999775432 223 233567777777654 27999999999985
No 113
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.66 E-value=2.6e-15 Score=127.26 Aligned_cols=117 Identities=15% Similarity=0.132 Sum_probs=77.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++..... ...+..+... ......++ ..+.||||||..+...... .+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~- 93 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENY-IADIEVDGKQVELALWDTAGQEDYDRLRP-------LS- 93 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCS-SCCCSSCCCC-EEEEEETTEEEEEEEECCCCSGGGTTTGG-------GG-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCcccceE-EEEEEECCEEEEEEEEECCCchhHHHHHH-------Hh-
Confidence 46999999999999999999999876422 2222222222 22344555 4789999999754322221 11
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
...+|++++|++++.. .+...+..++..+..... ..|+++|+||+|+.+
T Consensus 94 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 94 -YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRQ 143 (201)
T ss_dssp -CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGTT
T ss_pred -cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecHHhhc
Confidence 2689999999888643 233333456666666432 279999999999864
No 114
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.66 E-value=1.7e-15 Score=125.80 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=72.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
..+++|+++|.+|+|||||+|++++.......+..+ .......+++..+.+|||||..+...... .++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~- 83 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIG----FNVETLSYKNLKLNVWDLGGQTSIRPYWR-------CYY- 83 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTT----CCEEEEEETTEEEEEEEEC----CCTTGG-------GTT-
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCc----cceEEEEECCEEEEEEECCCCHhHHHHHH-------HHh-
Confidence 357999999999999999999999876422222222 22334556788999999999965433221 112
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|++++|++++.. ++.. ...++..+..... ....|+++|+||+|+.+
T Consensus 84 -~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 84 -ADTAAVIFVVDSTDKDRMST-ASKELHLMLQEEE-LQDAALLVFANKQDQPG 133 (183)
T ss_dssp -TTEEEEEEEEETTCTTTHHH-HHHHHHHHTTSST-TSSCEEEEEEECTTSTT
T ss_pred -ccCCEEEEEEECCCHHHHHH-HHHHHHHHHcChh-hCCCeEEEEEECCCCCC
Confidence 589999999887532 1211 1223333322110 12379999999999854
No 115
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.65 E-value=7.8e-16 Score=130.29 Aligned_cols=122 Identities=15% Similarity=0.129 Sum_probs=54.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCC-CeeEEEEeeeCC----eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRAG----FTLNIVDTPGLIEGGYVNYHAIQLIK 112 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t-~~~~~~~~~~~g----~~l~liDTPG~~~~~~~~~~~~~~i~ 112 (309)
..++|+|+|.+|+|||||+|+|++..........+++ .+.......+++ ..+.||||||.. .......
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~~~~~~ 91 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD-------LYKEQIS 91 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH-------HHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH-------HHHHHHH
Confidence 4589999999999999999999988322333333332 233344455554 589999999982 1112222
Q ss_pred HhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCc-cccCcEEEEEecccCCC
Q 021699 113 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSL 168 (309)
Q Consensus 113 ~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~-~~~~~~iiV~tk~D~~~ 168 (309)
.+ ...+|++++|++++..........++..+....+. ....|+++|+||+|+.+
T Consensus 92 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 92 QY--WNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp TT--CCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred HH--HhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 22 26899999998876422112334566666665430 01279999999999965
No 116
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.65 E-value=6.6e-15 Score=124.21 Aligned_cols=125 Identities=14% Similarity=0.074 Sum_probs=76.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEee-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS-RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~-~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
...+||+++|.+|||||||+|.+++............+......... .....+.||||||..+...........+
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~---- 93 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF---- 93 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH----
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc----
Confidence 35799999999999999999999986432211111122222222222 2346899999999866433320001122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++.. +......+..++.+........|+++|+||+|+.+
T Consensus 94 --~~~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 94 --RGTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp --HTCSEEEEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred --ccCCEEEEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence 479999999888652 33344445555554421122379999999999863
No 117
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.65 E-value=2.9e-15 Score=127.76 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=79.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++... .....+++..........++ ..+.||||||..+...... .++
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~ 78 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRP-------LSY 78 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--C-------GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHH-------hhc
Confidence 469999999999999999999997653 23333333344444445555 4889999999965433221 122
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|++++|++++.. .+......++..+....+ ..|+++|+||+|+.+
T Consensus 79 --~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 79 --RGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRD 127 (212)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHT
T ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhh
Confidence 689999999887542 232222356666666543 279999999999853
No 118
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.64 E-value=1.5e-14 Score=119.52 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=74.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+++|.+|+|||||+|++++..... ..++...........++. .+.+|||||... . ..+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~---~~~--- 70 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----A---KFS--- 70 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----H---HHH---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----h---HHH---
Confidence 356999999999999999999999876432 222223333444555654 678999999853 1 222
Q ss_pred hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCc-cccCcEEEEEecccCC
Q 021699 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLS 167 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~-~~~~~~iiV~tk~D~~ 167 (309)
.++|++++|++++...-...-..+++.+...... ....|+++|+||+|+.
T Consensus 71 ---~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 71 ---GWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp ---HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred ---HhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 3689999998876422112223344445544321 1236999999999984
No 119
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.64 E-value=8.8e-16 Score=138.95 Aligned_cols=121 Identities=16% Similarity=0.198 Sum_probs=86.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHh--h
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF--L 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~--~ 115 (309)
...+|+++|++|+|||||+|+|+|.....+++.+++|..........++..+.++||||+.. ......-+.+... .
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~--~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM--EEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCH--HHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCc--cchhhHHHHHHHHHHH
Confidence 34689999999999999999999998777777777887766666677888999999999941 0000110111110 1
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
....+|++++|++.+. ++..+..+++.+.. ...|+++|+||+|+.
T Consensus 85 ~l~~~D~vl~Vvd~~~--~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR--WTPDDEMVLNKLRE-----GKAPVILAVNKVDNV 129 (301)
T ss_dssp CCCCEEEEEEEEETTC--CCHHHHHHHHHHHS-----SSSCEEEEEESTTTC
T ss_pred HHhcCCEEEEEEeCCC--CCHHHHHHHHHHHh-----cCCCEEEEEECcccC
Confidence 1258899999977653 77777766665542 127999999999985
No 120
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.64 E-value=5.2e-15 Score=135.49 Aligned_cols=163 Identities=11% Similarity=0.113 Sum_probs=97.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
++++|+|+|.+|+|||||+|+|++.... ...+ |...........+..+.||||||..+....... ++
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~--~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~~-- 230 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH-------YF-- 230 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCE--EEEE--ETTEEEEEEEETTEEEEEEECC-----CCSHHH-------HH--
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCC--Cccc--ccceEEEEEecCcEEEEEEECCCCHhHHHHHHH-------Hh--
Confidence 4579999999999999999999987742 2222 444445566678889999999997554433221 22
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccccc
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMK 196 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 196 (309)
..+|++|+|++++.. ++......+...+..... ...|+++|+||+|+.... ..+ .+.+.+.... .
T Consensus 231 ~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~--~~~piilV~NK~Dl~~~~--~~~--------~i~~~~~~~~-~- 296 (329)
T 3o47_A 231 QNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL--RDAVLLVFANKQDLPNAM--NAA--------EITDKLGLHS-L- 296 (329)
T ss_dssp TTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGG--TTCEEEEEEECTTSTTCC--CHH--------HHHHHHTCTT-C-
T ss_pred ccCCEEEEEEECCchHHHHHHHHHHHHHHhhhcc--CCCeEEEEEECccCCccc--CHH--------HHHHHhchhh-h-
Confidence 589999999888542 233333333333322211 136899999999986432 222 2222222110 0
Q ss_pred ccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhc
Q 021699 197 KKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246 (309)
Q Consensus 197 ~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~ 246 (309)
....+|++.+++. ++.+ +.+|++.+...+..
T Consensus 297 ----~~~~~~~~~vSAk----~g~g-----------i~el~~~l~~~l~~ 327 (329)
T 3o47_A 297 ----RHRNWYIQATCAT----SGDG-----------LYEGLDWLSNQLRN 327 (329)
T ss_dssp ----CSSCEEEEECBTT----TTBT-----------HHHHHHHHHHHHTC
T ss_pred ----hcCCCEEEEEECC----CCcC-----------HHHHHHHHHHHHHh
Confidence 1123677777663 3333 78898888877654
No 121
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.64 E-value=8.1e-16 Score=127.46 Aligned_cols=117 Identities=16% Similarity=0.129 Sum_probs=69.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++... .....+++..........++ ..+.+|||||..+...... .++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~ 77 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRP-------LSY 77 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC--C----------CBCCCC-------CEEECCCC-CTTTTTGG-------GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHH-------hhc
Confidence 469999999999999999999997652 22222222221111222333 3567999999865433221 122
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++.. ++......++..+..... ..|+++|+||+|+.+
T Consensus 78 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 78 --RGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRD 126 (182)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHT
T ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhc
Confidence 589999999887542 232223346666766543 279999999999853
No 122
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.64 E-value=8.4e-16 Score=132.15 Aligned_cols=121 Identities=12% Similarity=0.100 Sum_probs=79.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 36 NVNTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
....++|+++|.+|+|||||+|+++... .....+..+.+...........+..+.||||||..........+ +
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---~--- 85 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY---Y--- 85 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHH---H---
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHH---H---
Confidence 3457999999999999999999955332 22233344444444444443445689999999975544433322 2
Q ss_pred hhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 115 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++.......-..++..+.+... ..|+++|+||+|+.+
T Consensus 86 ---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 86 ---IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKD 133 (221)
T ss_dssp ---TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSS
T ss_pred ---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCcccc
Confidence 589999999888643211222356666666543 269999999999863
No 123
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.63 E-value=5.7e-15 Score=124.19 Aligned_cols=116 Identities=11% Similarity=0.117 Sum_probs=76.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
++++|+++|.+|+|||||+|++.+....... .|.........+++..+.+|||||..+...... .++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~-- 88 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQ----PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWK-------DYF-- 88 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCC----CCCSCEEEEEEETTEEEEEEECCCSGGGTTSGG-------GGC--
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccc----cCCCCCeEEEEECCEEEEEEECCCCHHHHHHHH-------HHH--
Confidence 4689999999999999999999987643222 233334556677889999999999855332221 122
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|++++|++++.. ++... ..++..+.+... ....|+++|+||+|+.+
T Consensus 89 ~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 89 PEVNGIVFLVDAADPERFDEA-RVELDALFNIAE-LKDVPFVILGNKIDAPN 138 (190)
T ss_dssp TTCCEEEEEEETTCGGGHHHH-HHHHHHHHTCGG-GTTCCEEEEEECTTSTT
T ss_pred hcCCEEEEEEECCChHHHHHH-HHHHHHHHcchh-hcCCCEEEEEECCCCcC
Confidence 588999999887542 22222 233333332211 12379999999999863
No 124
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.63 E-value=2.1e-15 Score=129.09 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=73.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC------------CeEEEEEeCCCCCCCCCCc
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA------------GFTLNIVDTPGLIEGGYVN 104 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~------------g~~l~liDTPG~~~~~~~~ 104 (309)
...++|+|+|.+|+|||||+|+|++... .....+..+.........++ ...+.||||||..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~------ 95 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKF-NPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE------ 95 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCC-CCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCC-CcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH------
Confidence 3469999999999999999999998753 11111111112222223333 4579999999952
Q ss_pred HHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCcc--ccCcEEEEEecccCCCCCCCC
Q 021699 105 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQ--IWKRALIVLTHAQLSLPDRLD 173 (309)
Q Consensus 105 ~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~--~~~~~iiV~tk~D~~~~~~~~ 173 (309)
.+......++ ..+|++++|++++... ....+..++....... ...|+++|+||+|+.+....+
T Consensus 96 -~~~~~~~~~~--~~~d~iilV~D~~~~~---s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~ 160 (217)
T 2f7s_A 96 -RFRSLTTAFF--RDAMGFLLMFDLTSQQ---SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN 160 (217)
T ss_dssp -HHHHHHHHHH--TTCCEEEEEEETTCHH---HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSC
T ss_pred -hHHhHHHHHh--cCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccC
Confidence 2222223333 6899999998875421 1111222222222111 237899999999986444433
No 125
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.63 E-value=1.7e-14 Score=123.05 Aligned_cols=118 Identities=15% Similarity=0.199 Sum_probs=73.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHH-HHHH
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQ-LIKR 113 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~---g~~l~liDTPG~~~~~~~~~~~~~-~i~~ 113 (309)
..++|+++|.+|+|||||+|++++... ....++++..... ..++ +..+.||||||..+ +.. ....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~ 74 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY--RDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHES-------LRFQLLDR 74 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC--CCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHH-------HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--ccccCCcceeeEE--EEecCCCccEEEEEECCCChh-------HHHHHHHH
Confidence 469999999999999999999998763 2333333333333 4444 67899999999832 112 1222
Q ss_pred hhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHh----CccccCcEEEEEecccCCCCC
Q 021699 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNF----GEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 114 ~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~----g~~~~~~~iiV~tk~D~~~~~ 170 (309)
++ .++|++++|++++. +........+.+...+ ......|+++|+||+|+.+..
T Consensus 75 ~~--~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 75 FK--SSARAVVFVVDSAA--FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HG--GGEEEEEEEEETTT--HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred HH--hhCCEEEEEEECCC--cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 33 58999999977653 2222223333333221 112237999999999996443
No 126
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.63 E-value=3e-15 Score=149.74 Aligned_cols=138 Identities=16% Similarity=0.188 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeE---------EEEee--------
Q 021699 21 TQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV---------MVSRS-------- 83 (309)
Q Consensus 21 ~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~---------~~~~~-------- 83 (309)
+...+.++...+.......++|+|+|.+|+|||||+|+|+|.+...++..+++..... +....
T Consensus 51 l~~~l~~L~~~~~~l~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~ 130 (695)
T 2j69_A 51 LERDIEDITIASKNLQQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQL 130 (695)
T ss_dssp CHHHHHHHHHHHHHHHHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEE
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCccccc
Confidence 3334444444333333367999999999999999999999998777776555421100 00000
Q ss_pred ----------eCC------------------------------eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEE
Q 021699 84 ----------RAG------------------------------FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 123 (309)
Q Consensus 84 ----------~~g------------------------------~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~i 123 (309)
..+ ..+.||||||+.+......... .++ ..+|++
T Consensus 131 ~~~~i~~~~~i~~~~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~----~~i--~~aD~v 204 (695)
T 2j69_A 131 DFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSL----GYV--NNCHAI 204 (695)
T ss_dssp EHHHHHHHSCCCHHHHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHT----HHH--HSSSEE
T ss_pred ChhhhhhhhcCCHHHHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHH----HHH--HhCCEE
Confidence 000 3689999999965332222222 233 479999
Q ss_pred EEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 124 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 124 l~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
|||++.+. .++..+..++....... ..|+++|+||+|+..+
T Consensus 205 L~Vvda~~-~~s~~e~~~l~~~l~~~----~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 205 LFVMRASQ-PCTLGERRYLENYIKGR----GLTVFFLVNAWDQVRE 245 (695)
T ss_dssp EEEEETTS-TTCHHHHHHHHHHTTTS----CCCEEEEEECGGGGGG
T ss_pred EEEEeCCC-ccchhHHHHHHHHHHhh----CCCEEEEEECcccccc
Confidence 99977653 35666665553222211 2689999999998644
No 127
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.63 E-value=5.1e-15 Score=125.34 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=71.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.++++|+++|.+|+|||||+|++.+.......+..+. ......+++..+.+|||||..+...... .++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~----~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~~- 90 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHP----TSEELTIAGMTFTTFDLGGHIQARRVWK-------NYL- 90 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCC----SCEEEEETTEEEEEEEECC----CCGGG-------GGG-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCc----eeEEEEECCEEEEEEECCCcHhhHHHHH-------HHH-
Confidence 3569999999999999999999998764322222222 2345567789999999999855433221 122
Q ss_pred cCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 117 NKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|++++|++++.. ++... ..++..+.+... ....|+++|+||+|+..
T Consensus 91 -~~~d~~i~v~D~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 91 -PAINGIVFLVDCADHERLLES-KEELDSLMTDET-IANVPILILGNKIDRPE 140 (198)
T ss_dssp -GGCSEEEEEEETTCGGGHHHH-HHHHHHHHTCGG-GTTSCEEEEEECTTSTT
T ss_pred -hcCCEEEEEEECCCHHHHHHH-HHHHHHHHhCcc-cCCCcEEEEEECCCccc
Confidence 478999999887542 22222 233333332211 12379999999999853
No 128
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.63 E-value=3e-17 Score=138.93 Aligned_cols=122 Identities=20% Similarity=0.155 Sum_probs=76.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+|+|.+|+|||||+|+|++... .....+..+.........+++ ..+.||||||..+.......+ +
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---~---- 103 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY---Y---- 103 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCC-CCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC---------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-CCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHH---h----
Confidence 469999999999999999999998764 222233334445555556666 478999999986544333221 1
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
..+|++++|++++.......-..++..+...... ..|+++|+||+|+.+...
T Consensus 104 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~~~ 155 (199)
T 3l0i_B 104 --RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTKKV 155 (199)
T ss_dssp --CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-C--CSEEEEC-CCSSCC--CC
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccC--CCCEEEEEECccCCcccc
Confidence 6899999997765321111223345445433222 269999999999865443
No 129
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.62 E-value=3.6e-14 Score=118.21 Aligned_cols=117 Identities=19% Similarity=0.226 Sum_probs=74.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH----HHHHHHHHhh
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY----HAIQLIKRFL 115 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~----~~~~~i~~~~ 115 (309)
++|+++|.+|+|||||+|++++.. +..+..+++|......... .+.+|||||+.+....+. .+......++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 689999999999999999999986 3555666666665554432 689999999865443322 2222223333
Q ss_pred h--cCCCcEEEEEEeCCccccChh------------HHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 116 L--NKTIDVLLYVDRLDVYRVDNL------------DKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~--~~~~d~il~v~~~d~~~~~~~------------d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
. ...++++++|.+.+ .+... +.+++..+.. ...|+++|+||+|+..
T Consensus 77 ~~~~~~~~~v~~v~d~~--s~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~ 136 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGK--AAPEIIKRWEKRGEIPIDVEFYQFLRE-----LDIPTIVAVNKLDKIK 136 (190)
T ss_dssp HHHGGGCCEEEEEEETT--HHHHHHHHHHHTTCCCHHHHHHHHHHH-----TTCCEEEEEECGGGCS
T ss_pred HhhhccCCEEEEEEcch--hhhhHHHhhhccCccHHHHHHHHHHHh-----cCCceEEEeehHhccC
Confidence 2 35677888885543 22221 1222222222 1279999999999863
No 130
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.9e-15 Score=125.59 Aligned_cols=154 Identities=15% Similarity=0.096 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHhhhc-CCCceEEEEEeCCCCCHHHHHHHHhCCCcccc--cCCCCCCCeeEEEEeeeCCeEEEEEeCCC
Q 021699 20 ATQTKLLELLGKLKQE-NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTV--STFQSEGPRPVMVSRSRAGFTLNIVDTPG 96 (309)
Q Consensus 20 ~~~~~l~~~~~~~~~~-~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~--~~~~~~t~~~~~~~~~~~g~~l~liDTPG 96 (309)
.+.+.+.+.+...... ....++|+++|.+|+|||||+|+|++...... +..+.. ...+.+..+.+|||||
T Consensus 28 ~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~Dt~G 100 (193)
T 2ged_A 28 QWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-------AADYDGSGVTLVDFPG 100 (193)
T ss_dssp HHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETT
T ss_pred HHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCce-------eeeecCCeEEEEECCC
Confidence 3344444444333322 23568999999999999999999998763221 111111 1223566899999999
Q ss_pred CCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCC-cc-ccChhHHHHHHHHHHHhC--ccccCcEEEEEecccCCCCCCC
Q 021699 97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLD-VY-RVDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLSLPDRL 172 (309)
Q Consensus 97 ~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d-~~-~~~~~d~~~l~~l~~~~g--~~~~~~~iiV~tk~D~~~~~~~ 172 (309)
..+.......+ ++..+ ..+|++++|++++ .. .+.. ...++..+..... .....|+++|+||+|+.+..
T Consensus 101 ~~~~~~~~~~~---~~~~~--~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-- 172 (193)
T 2ged_A 101 HVKLRYKLSDY---LKTRA--KFVKGLIFMVDSTVDPKKLTT-TAEFLVDILSITESSCENGIDILIACNKSELFTAR-- 172 (193)
T ss_dssp CCBSSCCHHHH---HHHHG--GGEEEEEEEEETTCCHHHHHH-HHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC--
T ss_pred CchHHHHHHHH---HHhhc--ccCCEEEEEEECCCCchhHHH-HHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC--
Confidence 96654433332 22222 4689999998775 21 1211 1223333332211 01127999999999996443
Q ss_pred CHHHHHHhhhHHHHHh
Q 021699 173 DYEVFCSKRSEALLKF 188 (309)
Q Consensus 173 ~~~~~~~~~~~~l~~~ 188 (309)
..++..+...+.+..+
T Consensus 173 ~~~~~~~~l~~~l~~l 188 (193)
T 2ged_A 173 PPSKIKDALESEIQKV 188 (193)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3455443333334333
No 131
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.62 E-value=8.3e-15 Score=122.17 Aligned_cols=116 Identities=16% Similarity=0.099 Sum_probs=75.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++.... ....++...........++ ..+.+|||||..+...... .+
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~- 75 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP-------LS- 75 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGG-------GG-
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHH-------hh-
Confidence 5699999999999999999999987531 2222222222223334443 4789999999854322211 11
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..++|++++|++++.. ++......++..+.+... ..|+++|+||+|+.
T Consensus 76 -~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 76 -YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLR 124 (184)
T ss_dssp -CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGG
T ss_pred -cCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEcchhh
Confidence 2689999999887642 122222345666655432 26999999999985
No 132
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=3.6e-14 Score=121.82 Aligned_cols=128 Identities=14% Similarity=0.091 Sum_probs=79.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..+||+|+|.+|||||||+|++++.........+.++.........++|. .+.+|||+|... . ...+.. .
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~------~-~~~l~~-~ 107 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG------E-NEWLHD-H 107 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH------H-HHHHHH-C
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc------h-hhhHHH-H
Confidence 46999999999999999999999865434444444445544555566765 467899999732 1 112221 1
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
....+|++++|++++.. ++... ..+...+.+... ....|+++|+||+|+.+......+
T Consensus 108 ~~~~a~~~ilVydvt~~~sf~~~-~~~~~~l~~~~~-~~~~piilVgNK~DL~~~r~v~~~ 166 (211)
T 2g3y_A 108 CMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVS 166 (211)
T ss_dssp CCCCCSEEEEEEETTCHHHHHHH-HHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHH
T ss_pred HHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHHhC-CCCCcEEEEEEChHHhcCceEeHH
Confidence 23578999999888653 23222 234444443211 123799999999998644444433
No 133
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.62 E-value=5.2e-16 Score=147.47 Aligned_cols=120 Identities=18% Similarity=0.261 Sum_probs=75.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHhhhcC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLLNK 118 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~-~~~~~~~i~~~~~~~ 118 (309)
.+|+++|++|||||||+|+|+|...+.+++.+++|++.......+++..+.||||||+...... .+++......++ .
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~--~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM--D 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHH--H
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHH--H
Confidence 6899999999999999999999887778888999998888888889999999999999632211 112222222223 5
Q ss_pred CCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 119 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.+|++|+|++... +++..+..+.+.+.+ ..+|+++|+||+|+.
T Consensus 82 ~ad~il~vvD~~~-~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 82 EADVIIFMVNGRE-GVTAADEEVAKILYR-----TKKPVVLAVNKLDNT 124 (436)
T ss_dssp HCSEEEEEEETTT-CSCHHHHHHHHHHTT-----CCSCEEEEEECCCC-
T ss_pred hCCEEEEEEeCCC-CCCHHHHHHHHHHHH-----cCCCEEEEEECccCc
Confidence 7999999977643 466777666655543 127999999999985
No 134
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.62 E-value=3.3e-15 Score=135.47 Aligned_cols=138 Identities=20% Similarity=0.304 Sum_probs=78.9
Q ss_pred HHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCee---EEEE--------------------
Q 021699 25 LLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRP---VMVS-------------------- 81 (309)
Q Consensus 25 l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~---~~~~-------------------- 81 (309)
|.+++..+........+|+|+|.+|+|||||+|+|+|......+. ..+|..+ ....
T Consensus 10 l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~-~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (315)
T 1jwy_B 10 LQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGS-GIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKP 88 (315)
T ss_dssp HHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC---------CEEEEEEECCCCTTSCCCCCEEEESSST
T ss_pred HHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCC-CceeeeeEEEEEEeCCCcccccchhhhhhhhccc
Confidence 344433333223456899999999999999999999987522211 1112211 0000
Q ss_pred -------------------------------------eeeCCeEEEEEeCCCCCCCC------CCcHHHHHHHHHhhhcC
Q 021699 82 -------------------------------------RSRAGFTLNIVDTPGLIEGG------YVNYHAIQLIKRFLLNK 118 (309)
Q Consensus 82 -------------------------------------~~~~g~~l~liDTPG~~~~~------~~~~~~~~~i~~~~~~~ 118 (309)
....+..+.||||||+.+.. ...+........++ .
T Consensus 89 ~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~--~ 166 (315)
T 1jwy_B 89 NDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYI--K 166 (315)
T ss_dssp TCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHH--H
T ss_pred ccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHH--c
Confidence 11134579999999996522 12222333333444 5
Q ss_pred CCcEEEEEEeCCccccChhH-HHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021699 119 TIDVLLYVDRLDVYRVDNLD-KQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 119 ~~d~il~v~~~d~~~~~~~d-~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
.+|++++|++.....+...+ ..+++.+.. ...|+++|+||+|+.+++
T Consensus 167 ~~d~iilvvd~~~~~~~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~~ 214 (315)
T 1jwy_B 167 KQNAIIVAVTPANTDLANSDALQLAKEVDP-----EGKRTIGVITKLDLMDKG 214 (315)
T ss_dssp STTEEEEEEEESSSCSTTCSHHHHHHHHCS-----SCSSEEEEEECTTSSCSS
T ss_pred CCCeEEEEEEecCcchhhhHHHHHHHHhCC-----CCCcEEEEEcCcccCCcc
Confidence 88999999765322344333 355555432 127999999999997544
No 135
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.61 E-value=7.5e-16 Score=147.17 Aligned_cols=122 Identities=18% Similarity=0.261 Sum_probs=79.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHhhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~-~~~~~~~i~~~~~ 116 (309)
...+|+|+|++|||||||+|+|+|...+.+.+.+++|.+.......+.+..+.||||||+...... .+++......++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~- 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM- 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH-
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH-
Confidence 457999999999999999999999987778888899998888888888999999999998643222 223333333333
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++|+|++... .++..+..+.+.+.+. .+|+++|+||+|+.
T Consensus 101 -~~ad~il~VvD~~~-~~~~~d~~l~~~l~~~-----~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 101 -DEADVIIFMVNGRE-GVTAADEEVAKILYRT-----KKPVVLAVNKLDNT 144 (456)
T ss_dssp -HHCSEEEEEEESSS-CSCHHHHHHHHHHTTC-----CSCEEEEEECC---
T ss_pred -hhCCEEEEEEeCCC-CCChHHHHHHHHHHHc-----CCCEEEEEECccch
Confidence 57899999977532 5778888777776542 27999999999985
No 136
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.61 E-value=8.2e-16 Score=142.60 Aligned_cols=148 Identities=17% Similarity=0.206 Sum_probs=106.5
Q ss_pred hhccccCCCChhhHHHHHHHHHHhhhcC----------------CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCC
Q 021699 9 REWMGIQQFPPATQTKLLELLGKLKQEN----------------VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS 72 (309)
Q Consensus 9 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~----------------~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~ 72 (309)
+..+|++..-..++.+|.++.+.+.... ....+|+++|.||||||||+|+|+|.. ..++++++
T Consensus 26 ~k~k~Te~~~~~lk~kla~lr~el~~~~~~~~~~~~~~~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pf 104 (376)
T 4a9a_A 26 QKNKATSFHLGQLKAKLAKLRRELLTSASSGSGGGAGIGFDVARTGVASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEF 104 (376)
T ss_dssp CCSTTTHHHHHHHHHHHHHHHHHHHCC-------CCSBTTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCS
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCceEeecCCCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCC
Confidence 5568888888888998888877764321 113589999999999999999999987 47789999
Q ss_pred CCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcH----HHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHH
Q 021699 73 EGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY----HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDN 148 (309)
Q Consensus 73 ~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~----~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~ 148 (309)
+|.++......+.+.++.++||||+.+...... ++++.+ ..+|++++|++... . ..+.+.+..-...
T Consensus 105 tT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i------~~ad~il~vvD~~~--p-~~~~~~i~~EL~~ 175 (376)
T 4a9a_A 105 TTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVA------RTCNLLFIILDVNK--P-LHHKQIIEKELEG 175 (376)
T ss_dssp SCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHH------HHCSEEEEEEETTS--H-HHHHHHHHHHHHH
T ss_pred ceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHH------HhcCccccccccCc--c-HHHHHHHHHHHHH
Confidence 999999999999999999999999976533222 333333 47899999966532 1 2233444332333
Q ss_pred hCcc-ccCcEEEEEecccC
Q 021699 149 FGEQ-IWKRALIVLTHAQL 166 (309)
Q Consensus 149 ~g~~-~~~~~iiV~tk~D~ 166 (309)
++.. ..+|.++++||+|.
T Consensus 176 ~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 176 VGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp TTEEETCCCCCEEEEECSS
T ss_pred hhHhhccCChhhhhhHhhh
Confidence 3422 23688999999985
No 137
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.61 E-value=1.7e-14 Score=131.18 Aligned_cols=125 Identities=16% Similarity=0.118 Sum_probs=82.7
Q ss_pred HHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeE--EEEEeCCCCCCCCCCcHHH
Q 021699 30 GKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT--LNIVDTPGLIEGGYVNYHA 107 (309)
Q Consensus 30 ~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~--l~liDTPG~~~~~~~~~~~ 107 (309)
..+.......++|+++|.+|+|||||+|++++... .....+++..........++.. +.+|||||..+......
T Consensus 146 ~~~~~~~~~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-- 221 (332)
T 2wkq_A 146 ENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP-- 221 (332)
T ss_dssp HHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGG--
T ss_pred ccchhcccceeEEEEECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHH--
Confidence 33333345679999999999999999999997653 3334445555445555666665 55999999854332221
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 108 IQLIKRFLLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 108 ~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.+ ...+|++++|++++.. ++......++..+....+ ..|+++|+||+|+.+
T Consensus 222 -----~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 222 -----LS--YPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 273 (332)
T ss_dssp -----GG--CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHT
T ss_pred -----Hh--ccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhccc
Confidence 11 2689999999887542 222222346666665543 379999999999853
No 138
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.61 E-value=9.7e-15 Score=124.50 Aligned_cols=117 Identities=16% Similarity=0.092 Sum_probs=75.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+++|.+|+|||||+|+|++.... .....+..........+++ ..+.||||||..+...... .+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~ 96 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP-------LS 96 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGG-------GG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHH-------hh
Confidence 35799999999999999999999987532 2222222222223334443 5789999999754322211 11
Q ss_pred hhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 115 LLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..++|++++|++++.. ++......++..+.+... ..|+++|+||+|+.
T Consensus 97 --~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 97 --YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLR 145 (205)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGG
T ss_pred --ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEechhhc
Confidence 2689999999887642 122222456666665532 26999999999985
No 139
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.61 E-value=3.1e-14 Score=119.09 Aligned_cols=114 Identities=17% Similarity=0.031 Sum_probs=75.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 021699 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKR 113 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~ 113 (309)
....+||+++|.+|+|||||+|++++..... ... .|.........+++. .+.||||||..+.. .+
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~--~~~-~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~-- 83 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQ--EES-PEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ--------FA-- 83 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCC--CCC-TTCEEEEEEEEETTEEEEEEEEECSSSCCHH--------HH--
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCC--CcC-CCcceEEEEEEECCEEEEEEEEECCCChhhh--------ee--
Confidence 3467999999999999999999999876422 111 233334445566764 56789999984321 22
Q ss_pred hhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 114 ~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+|++++|++++...-...-..++..+....+ ....|+++|+||+|+.
T Consensus 84 ----~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 84 ----AWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAIS 132 (184)
T ss_dssp ----HHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCB
T ss_pred ----cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence 368999999888642211111345555554422 1237999999999984
No 140
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.60 E-value=2.5e-14 Score=120.53 Aligned_cols=126 Identities=15% Similarity=0.146 Sum_probs=76.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCC-CCCcHHHHHHHHHh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEG-GYVNYHAIQLIKRF 114 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~-~~~~~~~~~~i~~~ 114 (309)
..++|+++|.+|||||||+|++++......+..++++.+.......++|. .+.+|||+|.... ...... +
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~-------~ 77 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDH-------C 77 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGG-------H
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHh-------h
Confidence 46999999999999999999999754333343344444444555566766 4678999997531 111111 1
Q ss_pred hhcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021699 115 LLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
. ..+|++++|++++.. ++.. -..+...+.+.... ...|+++|+||+|+........
T Consensus 78 ~--~~~~~~i~v~dv~~~~s~~~-~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~~r~v~~ 134 (192)
T 2cjw_A 78 M--QVGDAYLIVYSITDRASFEK-ASELRIQLRRARQT-EDIPIILVGNKSDLVRXREVSV 134 (192)
T ss_dssp H--HHCSEEEEEEETTCHHHHHH-HHHHHHHHHHHTTT-SCCCEEEEEECTTCGGGCCSCH
T ss_pred c--ccCCEEEEEEECCCHHHHHH-HHHHHHHHHHhhCC-CCCeEEEEEechhhhccccccH
Confidence 1 357999999888643 2322 23455555544221 1268999999999864333333
No 141
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.60 E-value=5.8e-15 Score=123.67 Aligned_cols=121 Identities=12% Similarity=0.047 Sum_probs=69.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCC-------CCCCCeeEEEE--e-ee--CCeEEEEEeCCCCCCCCCCcH
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGPRPVMVS--R-SR--AGFTLNIVDTPGLIEGGYVNY 105 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~-------~~~t~~~~~~~--~-~~--~g~~l~liDTPG~~~~~~~~~ 105 (309)
..+||+++|.+|+|||||+|.+.+......... ...|....... . .. .+..+.||||||..+...
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--- 89 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA--- 89 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH---
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH---
Confidence 469999999999999999999987643221110 00011111111 1 12 234789999999854321
Q ss_pred HHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHH----HHHHHhCccccCcEEEEEecccCCC
Q 021699 106 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITR----AITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 106 ~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~----~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.. ..++ .++|++++|++++.. ....+...+. ++.+........|+++|+||+|+.+
T Consensus 90 ~~----~~~~--~~~d~~i~v~D~~~~-~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~ 149 (198)
T 3t1o_A 90 SR----KLIL--RGVDGIVFVADSAPN-RLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD 149 (198)
T ss_dssp HH----HHHT--TTCCEEEEEEECCGG-GHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT
T ss_pred HH----HHHH--hcCCEEEEEEECCcc-hhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc
Confidence 11 1122 689999999887632 1122223333 3332211123379999999999853
No 142
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.60 E-value=1.2e-14 Score=124.56 Aligned_cols=118 Identities=17% Similarity=0.129 Sum_probs=76.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRF 114 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~ 114 (309)
...++|+|+|.+|+|||||+|++++... .....++...........++ ..+.||||||..+...... .+
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~ 95 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRP-------LC 95 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGG-------GG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCC--CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHH-------HH
Confidence 4579999999999999999999998763 22222332222333333433 5789999999854332221 12
Q ss_pred hhcCCCcEEEEEEeCCccc-cChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 115 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+ .++|++++|++++... +......++..+..... ..|+++|+||+|+.+
T Consensus 96 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 96 Y--SDSDAVLLCFDISRPETVDSALKKWRTEILDYCP---STRVLLIGCKTDLRT 145 (214)
T ss_dssp C--TTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT---TSEEEEEEECGGGGG
T ss_pred c--CCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 2 5899999998886422 22223456777766542 269999999999863
No 143
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.60 E-value=6.3e-15 Score=133.64 Aligned_cols=126 Identities=17% Similarity=0.086 Sum_probs=81.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHH-HHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQ-LIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~l~liDTPG~~~~~~~~~~~~~-~i~~~~ 115 (309)
..+||+++|.+|+|||||+|++++.....++..+++|.........+ ++..+.||||||..+. .+.+.. ....++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~---~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF---MENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH---HHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH---hhhhhhhHHHHHh
Confidence 35899999999999999999999885445566677777766666554 5679999999998422 111111 111122
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++.......-..+.+.+.+........|+++|+||+|+.+
T Consensus 79 --~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 79 --QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp --TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred --ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 589999999887642111111233333433321112279999999999863
No 144
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.59 E-value=7.3e-15 Score=135.01 Aligned_cols=120 Identities=17% Similarity=0.196 Sum_probs=83.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-eEEEEEeCCCCCCC----CCCcHHHHHHHHHhh
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEG----GYVNYHAIQLIKRFL 115 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~l~liDTPG~~~~----~~~~~~~~~~i~~~~ 115 (309)
+|+++|.+|||||||+|+|++... .+++.+.+|..+....+.+.+ ..+.|+||||+.+. ......+++.+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i---- 234 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI---- 234 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH----
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCC-ccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHH----
Confidence 688999999999999999998764 456777778777766666665 79999999997542 12223443333
Q ss_pred hcCCCcEEEEEEeCCc---cccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 116 LNKTIDVLLYVDRLDV---YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~---~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++|++|+|++++. .........++..+.........+|+++|+||+|+.
T Consensus 235 --~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~ 287 (342)
T 1lnz_A 235 --ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP 287 (342)
T ss_dssp --HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred --HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC
Confidence 46899999988753 111122234556665542222347999999999985
No 145
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.59 E-value=1.3e-13 Score=127.79 Aligned_cols=125 Identities=21% Similarity=0.152 Sum_probs=74.9
Q ss_pred ceE-EEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc-HHHHHHHHHhhh
Q 021699 39 TLT-ILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN-YHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~-I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~-~~~~~~i~~~~~ 116 (309)
.++ |+++|.+|+|||||+|+|+|... .+++.+++|.++....+.++|..+.++||||+......+ -+.+..+...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~-- 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSE-- 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHG--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHH--
Confidence 455 99999999999999999999874 566677888888777888899999999999985421111 0112222222
Q ss_pred cCCCcEEEEEEeCCccc--cChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 117 NKTIDVLLYVDRLDVYR--VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~--~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
...+|++++|+++.... .......+.+.+.. ++.. ..|+++|+||+|+.+
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~-l~~~-~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILRE-IGVS-GKPILVTLNKIDKIN 306 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH-HTCC-SCCEEEEEECGGGCC
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHH-hCcC-CCCEEEEEECCCCCC
Confidence 25889999997764311 11111122333333 3311 268999999999863
No 146
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.57 E-value=5.5e-14 Score=126.24 Aligned_cols=125 Identities=20% Similarity=0.306 Sum_probs=73.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccc-----ccCCCC----------------------CCCe--------------
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT-----VSTFQS----------------------EGPR-------------- 76 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~-----~~~~~~----------------------~t~~-------------- 76 (309)
..++|+|+|.+|+|||||+|+|+|..... ++..++ +|.+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999987542 222221 1111
Q ss_pred ---------eEEEEeee-CCeEEEEEeCCCCCCCCC---Cc---HHHHHHHHHhhhcCCCcEEE-EEEeCCccccChhHH
Q 021699 77 ---------PVMVSRSR-AGFTLNIVDTPGLIEGGY---VN---YHAIQLIKRFLLNKTIDVLL-YVDRLDVYRVDNLDK 139 (309)
Q Consensus 77 ---------~~~~~~~~-~g~~l~liDTPG~~~~~~---~~---~~~~~~i~~~~~~~~~d~il-~v~~~d~~~~~~~d~ 139 (309)
........ .+..+.||||||+.+... .. ......+..++ ..++.++ +|++.+. .++..+.
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~il~v~d~~~-~~~~~~~ 181 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFV--TKENCLILAVSPANS-DLANSDA 181 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHH--TSTTEEEEEEEESSS-CGGGCHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHH--cCCCeEEEEEecCCc-chhhhHH
Confidence 00001111 136899999999975321 11 12333334444 3556554 6766543 3444443
Q ss_pred -HHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021699 140 -QITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 140 -~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
.+++.+.. ...|+++|+||+|+.++.
T Consensus 182 ~~~~~~~~~-----~~~~~i~V~NK~Dl~~~~ 208 (299)
T 2aka_B 182 LKIAKEVDP-----QGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHHHHHCT-----TCSSEEEEEECGGGSCTT
T ss_pred HHHHHHhCC-----CCCeEEEEEEccccCCCC
Confidence 34444432 127999999999997543
No 147
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.57 E-value=3.1e-14 Score=137.22 Aligned_cols=163 Identities=13% Similarity=0.064 Sum_probs=100.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
..++|+++|.+|+|||||+|+|++... +... .|.......+.+.+..+.||||||..+..... ..++
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~--~~~~--~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~-- 387 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQS--VTTI--PTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW-------RHYY-- 387 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSC--CCCC--CCSSEEEEEEESSSCEEEEEEECCCGGGSGGG-------GGGG--
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCC--CCcC--CccceeEEEEEeCCEEEEEEECCCcHHHHHHH-------HHHh--
Confidence 469999999999999999999998873 2222 35555566677788999999999975433221 1222
Q ss_pred CCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhccccccc
Q 021699 118 KTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMK 196 (309)
Q Consensus 118 ~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 196 (309)
.++|++|+|++++.. ++.... .++..+.+... ....|+|+|+||+|+.+.. +.++ +.+.+... ..
T Consensus 388 ~~ad~~i~V~D~~~~~s~~~~~-~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~--~~~~--------~~~~~~~~--~~ 453 (497)
T 3lvq_E 388 TGTQGLIFVVDCADRDRIDEAR-QELHRIINDRE-MRDAIILIFANKQDLPDAM--KPHE--------IQEKLGLT--RI 453 (497)
T ss_dssp TTCCEEEEEEETTCGGGHHHHH-HHHHHHHTSGG-GTTCEEEEEEECCSSSSCC--CHHH--------HHHHTTCT--TC
T ss_pred ccCCEEEEEEECcchhHHHHHH-HHHHHHhhhhh-cCCCcEEEEEECCCCCcCC--CHHH--------HHHHhchh--hh
Confidence 689999999887542 232222 23333322211 1237999999999985322 2222 22222211 00
Q ss_pred ccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhc
Q 021699 197 KKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246 (309)
Q Consensus 197 ~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~ 246 (309)
.....+++.+++. ++.+ +.+|++.|...+..
T Consensus 454 ----~~~~~~~~~~SA~----~g~g-----------i~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 454 ----RDRNWYVQPSCAT----SGDG-----------LYEGLTWLTSNYKS 484 (497)
T ss_dssp ----CSSCEEEEECBTT----TTBT-----------HHHHHHHHHHHCC-
T ss_pred ----hcCCeEEEEEECC----CCCC-----------HHHHHHHHHHHHHh
Confidence 1123577777663 4443 78888888776643
No 148
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.56 E-value=9.2e-14 Score=133.58 Aligned_cols=155 Identities=15% Similarity=0.154 Sum_probs=92.7
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcc------------------------------cccCCCCCCCeeEEEEeeeC
Q 021699 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAV------------------------------TVSTFQSEGPRPVMVSRSRA 85 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~------------------------------~~~~~~~~t~~~~~~~~~~~ 85 (309)
....++|+++|.+|+|||||+|+|++.... ......+.|.+.....+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 346799999999999999999999865211 11112355666666667778
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc------cChhHHHHHHHHHHHhCccccCcEEE
Q 021699 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIWKRALI 159 (309)
Q Consensus 86 g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~------~~~~d~~~l~~l~~~~g~~~~~~~ii 159 (309)
+..+.||||||+.+ ....... .+ ..+|++|+|++++... +.....+.+..+.. .+. +++|+
T Consensus 110 ~~~~~iiDTPG~~~---f~~~~~~----~~--~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~---~~iIv 176 (483)
T 3p26_A 110 RANFTIVDAPGHRD---FVPNAIM----GI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNLII 176 (483)
T ss_dssp SCEEEEECCCCCGG---GHHHHHH----HH--TTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTC---CCEEE
T ss_pred CceEEEEECCCcHH---HHHHHHH----hh--hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCC---CcEEE
Confidence 88999999999943 2222222 22 6899999998875421 22344444433333 332 57999
Q ss_pred EEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEeccc
Q 021699 160 VLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENS 213 (309)
Q Consensus 160 V~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~ 213 (309)
|+||+|+.+.+...+++. .+.+.+++.... +. ...+|++.+|+.
T Consensus 177 viNK~Dl~~~~~~~~~~i----~~~~~~~l~~~g-~~-----~~~~~~i~iSA~ 220 (483)
T 3p26_A 177 AMNKMDNVDWSQQRFEEI----KSKLLPYLVDIG-FF-----EDNINWVPISGF 220 (483)
T ss_dssp EEECGGGGTTCHHHHHHH----HHHHHHHHHHHT-CC-----GGGEEEEECCSS
T ss_pred EEECcCcccchHHHHHHH----HHHHHHHHHHcC-CC-----cccceEEEEeee
Confidence 999999864322222222 234444443221 11 113688888774
No 149
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.55 E-value=1.3e-13 Score=132.51 Aligned_cols=165 Identities=12% Similarity=0.136 Sum_probs=99.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCc------ccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHH
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKA------VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQL 110 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~------~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~ 110 (309)
..+++|+++|.+++|||||+|+|++... ......++.|.+.....+.+++..+.||||||.. .+...
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~-------~~~~~ 89 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA-------DLIRA 89 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH-------HHHHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH-------HHHHH
Confidence 3469999999999999999999998761 1122233444444334455688899999999972 22222
Q ss_pred HHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhc
Q 021699 111 IKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVS 190 (309)
Q Consensus 111 i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~ 190 (309)
+...+ ..+|++|+|++++. .......+.+..+.. .+ .|.++|+||+|+.++ +..+...+.+++++.
T Consensus 90 ~~~~~--~~aD~~ilVvda~~-g~~~qt~e~l~~~~~-~~----ip~IvviNK~Dl~~~------~~~~~~~~~l~~~l~ 155 (482)
T 1wb1_A 90 VVSAA--DIIDLALIVVDAKE-GPKTQTGEHMLILDH-FN----IPIIVVITKSDNAGT------EEIKRTEMIMKSILQ 155 (482)
T ss_dssp HHHHT--TSCCEEEEEEETTT-CSCHHHHHHHHHHHH-TT----CCBCEEEECTTSSCH------HHHHHHHHHHHHHHH
T ss_pred HHHHH--hhCCEEEEEEecCC-CccHHHHHHHHHHHH-cC----CCEEEEEECCCcccc------hhHHHHHHHHHHHHh
Confidence 32222 68999999987753 355666666655543 33 577999999998631 111222244555543
Q ss_pred ccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHH
Q 021699 191 PSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVV 244 (309)
Q Consensus 191 ~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~ 244 (309)
....+. .+|++++|+. ++.+ +.+|++.+...+
T Consensus 156 ~~~~~~-------~~~ii~vSA~----~g~g-----------I~~L~~~L~~~i 187 (482)
T 1wb1_A 156 STHNLK-------NSSIIPISAK----TGFG-----------VDELKNLIITTL 187 (482)
T ss_dssp HSSSGG-------GCCEEECCTT----TCTT-----------HHHHHHHHHHHH
T ss_pred hhcccc-------cceEEEEECc----CCCC-----------HHHHHHHHHHhh
Confidence 321111 2688888763 3332 677877776654
No 150
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.55 E-value=9.2e-14 Score=130.63 Aligned_cols=169 Identities=17% Similarity=0.170 Sum_probs=99.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCC---------CeeEEE----------EeeeCCeEEEEEeCCCC
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEG---------PRPVMV----------SRSRAGFTLNIVDTPGL 97 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t---------~~~~~~----------~~~~~g~~l~liDTPG~ 97 (309)
...++|+++|.+|+|||||+|+|++............+ ...... ........+.||||||.
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 35799999999999999999999985321111000000 000000 00112268999999997
Q ss_pred CCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHH
Q 021699 98 IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF 177 (309)
Q Consensus 98 ~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~ 177 (309)
.+ ...... ..+ ..+|++++|++.+.........+.+..+... +. +|+++|+||+|+.+. ++.
T Consensus 86 ~~---~~~~~~----~~~--~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~~~-----~~~ 147 (403)
T 3sjy_A 86 EV---LMATML----SGA--ALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVVSK-----EEA 147 (403)
T ss_dssp GG---GHHHHH----HHH--TTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH-----HHH
T ss_pred HH---HHHHHH----HHH--hhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECccccch-----HHH
Confidence 32 222222 222 5899999998876422245566666555443 32 589999999998632 211
Q ss_pred HHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021699 178 CSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 178 ~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
....+.+++++... ....+|++.+|+. ++.+ +++|++.+...++..
T Consensus 148 -~~~~~~i~~~l~~~--------~~~~~~ii~vSA~----~g~g-----------i~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 148 -LSQYRQIKQFTKGT--------WAENVPIIPVSAL----HKIN-----------IDSLIEGIEEYIKTP 193 (403)
T ss_dssp -HHHHHHHHHHHTTS--------TTTTCCEEECBTT----TTBS-----------HHHHHHHHHHHSCCC
T ss_pred -HHHHHHHHHHHHhh--------CCCCCEEEEEECC----CCcC-----------hHHHHHHHHHhCCCC
Confidence 11123444444332 1124788888774 3333 788998888766543
No 151
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.54 E-value=5.2e-14 Score=117.48 Aligned_cols=116 Identities=19% Similarity=0.181 Sum_probs=66.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCC-CCCCCeeEEEEeee-----CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTF-QSEGPRPVMVSRSR-----AGFTLNIVDTPGLIEGGYVNYHAIQLIK 112 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~-~~~t~~~~~~~~~~-----~g~~l~liDTPG~~~~~~~~~~~~~~i~ 112 (309)
.++|+++|.+|+|||||+|++++......+.. +..+.......... ....+.+|||||..+......
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------- 74 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHP------- 74 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSH-------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhH-------
Confidence 48999999999999999999998632222222 22222222222222 345899999999743222211
Q ss_pred HhhhcCCCcEEEEEEeCCcc--ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 113 RFLLNKTIDVLLYVDRLDVY--RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 113 ~~~~~~~~d~il~v~~~d~~--~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.++ .++|++++|++++.. ++ ..-..++..+..... ..|+++|+||+|+.
T Consensus 75 ~~~--~~~~~~i~v~d~~~~~~s~-~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 125 (184)
T 2zej_A 75 HFM--TQRALYLAVYDLSKGQAEV-DAMKPWLFNIKARAS---SSPVILVGTHLDVS 125 (184)
T ss_dssp HHH--HHSEEEEEEEEGGGCHHHH-HTHHHHHHHHHHHCT---TCEEEEEEECGGGC
T ss_pred HHc--cCCcEEEEEEeCCcchhHH-HHHHHHHHHHHhhCC---CCcEEEEEECCCcc
Confidence 112 367999999887542 12 122345555544322 26899999999985
No 152
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.29 E-value=6.9e-16 Score=130.92 Aligned_cols=117 Identities=17% Similarity=0.135 Sum_probs=75.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 115 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g--~~l~liDTPG~~~~~~~~~~~~~~i~~~~ 115 (309)
..++|+++|.+|+|||||+|++++... .....+++..........++ ..+.+|||||..+...... .++
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~~ 99 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRP-------LSY 99 (204)
Confidence 569999999999999999999997653 22222333333333333444 3566999999854332211 111
Q ss_pred hcCCCcEEEEEEeCCcc-ccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 116 LNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|++++.. ++......++..+....+ ..|+++|+||+|+.+
T Consensus 100 --~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 100 --PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 148 (204)
Confidence 578999999776432 243333356666655433 279999999999864
No 153
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.53 E-value=3.2e-13 Score=128.31 Aligned_cols=157 Identities=10% Similarity=0.061 Sum_probs=92.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCccccc------------------------------CCCCCCCeeEEEEeeeCC
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVS------------------------------TFQSEGPRPVMVSRSRAG 86 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~------------------------------~~~~~t~~~~~~~~~~~g 86 (309)
...++|+++|.+|+|||||+|+|++....... ..++.|.+.....+...+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 35699999999999999999999765321111 113445555556667788
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccC------hhHHHHHHHHHHHhCccccCcEEEE
Q 021699 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD------NLDKQITRAITDNFGEQIWKRALIV 160 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~------~~d~~~l~~l~~~~g~~~~~~~iiV 160 (309)
..+.||||||..+. ...+...+ ..+|++|+|++++..-+. .+..+.+..+.. .+. +++|+|
T Consensus 95 ~~~~iiDTPGh~~f-------~~~~~~~~--~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~v---~~iIvv 161 (439)
T 3j2k_7 95 KHFTILDAPGHKSF-------VPNMIGGA--SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGV---KHLIVL 161 (439)
T ss_pred eEEEEEECCChHHH-------HHHHHhhH--hhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cCC---CeEEEE
Confidence 89999999998432 22222222 579999999877542111 344444444433 231 349999
Q ss_pred EecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEeccc
Q 021699 161 LTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENS 213 (309)
Q Consensus 161 ~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~ 213 (309)
+||+|+...+ .+ ++..+...+.+.+++... ++.. ...+|++++|+.
T Consensus 162 iNK~Dl~~~~-~~-~~~~~~i~~~~~~~l~~~-g~~~----~~~~~~i~iSA~ 207 (439)
T 3j2k_7 162 INKMDDPTVN-WS-NERYEECKEKLVPFLKKV-GFNP----KKDIHFMPCSGL 207 (439)
T ss_pred eecCCCcccc-hH-HHHHHHHHHHHHHHHHHh-cccc----cCCeeEEEeecc
Confidence 9999985322 11 111222234444444322 1111 013688888774
No 154
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.52 E-value=2.3e-13 Score=132.37 Aligned_cols=123 Identities=15% Similarity=0.145 Sum_probs=77.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEE------Eeee----CCeEEEEEeCCCCCCCCCCcH
Q 021699 36 NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV------SRSR----AGFTLNIVDTPGLIEGGYVNY 105 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~------~~~~----~g~~l~liDTPG~~~~~~~~~ 105 (309)
....+||+++|.+|||||||+|++++.... ....+..+....+. .... .+..+.+|||||.........
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~-~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFD-PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 345799999999999999999999987632 11112222222221 1111 257899999999765544433
Q ss_pred HHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCH
Q 021699 106 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 174 (309)
Q Consensus 106 ~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~ 174 (309)
.+ + .++|++++|+++. .. +....++..+....+. .|+++|+||+|+.+..+.+.
T Consensus 117 ~~---l------~~~d~ii~V~D~s--~~-~~~~~~~~~l~~~~~~---~pvilV~NK~Dl~~~~~v~~ 170 (535)
T 3dpu_A 117 FF---M------TRSSVYMLLLDSR--TD-SNKHYWLRHIEKYGGK---SPVIVVMNKIDENPSYNIEQ 170 (535)
T ss_dssp HH---H------HSSEEEEEEECGG--GG-GGHHHHHHHHHHHSSS---CCEEEEECCTTTCTTCCCCH
T ss_pred HH---c------cCCcEEEEEEeCC--Cc-hhHHHHHHHHHHhCCC---CCEEEEEECCCcccccccCH
Confidence 22 2 3689999996654 33 4456677777776432 79999999999975544443
No 155
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.51 E-value=1.3e-13 Score=127.54 Aligned_cols=125 Identities=18% Similarity=0.243 Sum_probs=73.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEE--------------------------------------
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVS-------------------------------------- 81 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~-------------------------------------- 81 (309)
.+|+|+|.+|+|||||+|+|+|.+....+. ..+|+.+....
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~-~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGS-GIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCS-SSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCC-CcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 499999999999999999999976533322 12222221111
Q ss_pred ----------------e-eeCCeEEEEEeCCCCCCCCC------CcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhH
Q 021699 82 ----------------R-SRAGFTLNIVDTPGLIEGGY------VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD 138 (309)
Q Consensus 82 ----------------~-~~~g~~l~liDTPG~~~~~~------~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d 138 (309)
. ...+..+.||||||+.+... ........+..++ .++|++++|++...... ..
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i--~~~d~iilvv~~~~~~~--~~ 189 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYI--EKPNCIILAISPANQDL--AT 189 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHH--HSSSEEEEEEEETTSCG--GG
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHh--hcCCeEEEEeecccCCc--CC
Confidence 1 11234689999999976421 1122333344444 58999988854322121 11
Q ss_pred HHHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021699 139 KQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 139 ~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
..++..+...... ..++++|+||+|+.++..
T Consensus 190 ~~~~~l~~~~~~~--~~~~i~V~nK~Dl~~~~~ 220 (360)
T 3t34_A 190 SDAIKISREVDPS--GDRTFGVLTKIDLMDKGT 220 (360)
T ss_dssp CHHHHHHHHSCTT--CTTEEEEEECGGGCCTTC
T ss_pred HHHHHHHHHhccc--CCCEEEEEeCCccCCCcc
Confidence 2233333332222 268999999999975544
No 156
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.51 E-value=1.2e-13 Score=127.67 Aligned_cols=126 Identities=20% Similarity=0.320 Sum_probs=74.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEE-------------------------------------
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVM------------------------------------- 79 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~------------------------------------- 79 (309)
....+|+|+|.+|+|||||+|+|+|.+...... ..+|..+..
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~-~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~ 107 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 107 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCS-SSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCC-CcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHH
Confidence 345799999999999999999999987542211 011221210
Q ss_pred --------------EEee-eCCeEEEEEeCCCCCCCCC---Cc---HHHHHHHHHhhhcCCCcEEEEEEeCCccccChhH
Q 021699 80 --------------VSRS-RAGFTLNIVDTPGLIEGGY---VN---YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD 138 (309)
Q Consensus 80 --------------~~~~-~~g~~l~liDTPG~~~~~~---~~---~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d 138 (309)
.... .++..+.||||||+..... .. +.+...+..++. ...+++|+|++.+. .+...+
T Consensus 108 i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiL~v~~a~~-~~~~~~ 185 (353)
T 2x2e_A 108 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANS-DLANSD 185 (353)
T ss_dssp HHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHT-STTEEEEEEEETTS-CGGGCH
T ss_pred hcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHc-CCCeEEEEEecCCC-ccchhH
Confidence 0111 1246799999999975321 11 233334444443 35566676755442 344444
Q ss_pred H-HHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021699 139 K-QITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 139 ~-~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
. .+++.+.. . ..++++|+||+|+.++.
T Consensus 186 ~~~i~~~~~~---~--~~~~i~V~NK~Dl~~~~ 213 (353)
T 2x2e_A 186 ALKVAKEVDP---Q--GQRTIGVITKLDLMDEG 213 (353)
T ss_dssp HHHHHHHHCT---T--CTTEEEEEECGGGSCTT
T ss_pred HHHHHHHhCc---C--CCceEEEeccccccCcc
Confidence 3 24433322 2 27999999999997543
No 157
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.50 E-value=1.5e-13 Score=129.18 Aligned_cols=184 Identities=13% Similarity=0.082 Sum_probs=106.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCC---C----ccc---cc------CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGE---K----AVT---VS------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~---~----~~~---~~------~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~ 100 (309)
...++|+++|.+|+|||||+|+|++. . .+. .. ...+.|.......+...+..+.||||||+.+.
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 45699999999999999999999973 1 000 00 02344555555556667789999999998542
Q ss_pred CCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCc-EEEEEecccCCCCCCCCHHHHHH
Q 021699 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLSLPDRLDYEVFCS 179 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~-~iiV~tk~D~~~~~~~~~~~~~~ 179 (309)
.... ...+ ..+|++|+|++++. .......+++..+... + .| +++|+||+|+.+ + ++..+
T Consensus 89 ---~~~~----~~~~--~~aD~~ilVvda~~-g~~~qt~~~l~~~~~~-~----ip~iivviNK~Dl~~-~----~~~~~ 148 (405)
T 2c78_A 89 ---IKNM----ITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQV-G----VPYIVVFMNKVDMVD-D----PELLD 148 (405)
T ss_dssp ---HHHH----HHHH--TTCSSEEEEEETTT-CCCHHHHHHHHHHHHT-T----CCCEEEEEECGGGCC-C----HHHHH
T ss_pred ---HHHH----HHHH--HHCCEEEEEEECCC-CCcHHHHHHHHHHHHc-C----CCEEEEEEECccccC-c----HHHHH
Confidence 1222 2222 58999999988754 3456666666555442 3 46 899999999863 1 11121
Q ss_pred hhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCc---hHHHHHHHHHHHhc
Q 021699 180 KRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW---IPNLVKTITEVVLN 246 (309)
Q Consensus 180 ~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w---~~~L~~~i~~~~~~ 246 (309)
...+.+++++.... +. ...+|++++|+..............+...+| +..|++.+...++.
T Consensus 149 ~~~~~~~~~l~~~~-~~-----~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 149 LVEMEVRDLLNQYE-FP-----GDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp HHHHHHHHHHHHTT-SC-----TTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhc-cc-----ccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 11234444443221 11 1236888887632110000000011112346 67788888776653
No 158
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.50 E-value=1.8e-12 Score=109.41 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=77.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~--~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.++|+++|.+|+|||||+|+|+|..... ...+..+.......+.++|. .+.+|||||..........+ .
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~-------~- 75 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAY-------Y- 75 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHH-------H-
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHH-------H-
Confidence 5899999999999999999999876422 22233344555556667775 56789999975433322211 1
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 173 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~ 173 (309)
..+|++++|+++........-..++..+...... ..++++|+||+|+.......
T Consensus 76 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~~~~~~ 129 (199)
T 2f9l_A 76 -RGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRAVP 129 (199)
T ss_dssp -TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSC
T ss_pred -hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccccccCcC
Confidence 5789999998775321111122345555443222 26899999999986443333
No 159
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.49 E-value=3.3e-13 Score=115.37 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=74.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
...++|+++|.+|+|||||+|+|++....... .+..+. ....+.+..+.+|||||+.+.. ......++...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~----~~~~~~-~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~- 80 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV----VSQEPL-SAADYDGSGVTLVDFPGHVKLR---YKLSDYLKTRA- 80 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBC----CCSSCE-EETTGGGSSCEEEECCCCGGGT---HHHHHHHHHHG-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCee----eecCce-EEEEeeCceEEEEECCCcHHHH---HHHHHHHHhcc-
Confidence 35699999999999999999999987632110 011111 1222356689999999994432 22222222111
Q ss_pred cCCCcEEEEEEeCC-cc-ccChhHHHHHHHHHHHhC--ccccCcEEEEEecccCCCCC
Q 021699 117 NKTIDVLLYVDRLD-VY-RVDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 117 ~~~~d~il~v~~~d-~~-~~~~~d~~~l~~l~~~~g--~~~~~~~iiV~tk~D~~~~~ 170 (309)
..+|++++|++.. .. .+... ..++..+..... .....|+++|+||+|+.+..
T Consensus 81 -~~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 81 -KFVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp -GGEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred -ccCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 3489999998876 21 23333 334444333211 01227999999999996544
No 160
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.49 E-value=5.3e-13 Score=126.62 Aligned_cols=117 Identities=16% Similarity=0.135 Sum_probs=75.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccccc----------CCC----------------------CCCCeeEEEEeeeC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVS----------TFQ----------------------SEGPRPVMVSRSRA 85 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~----------~~~----------------------~~t~~~~~~~~~~~ 85 (309)
..++|+++|.+|+|||||+|+|++....... ..+ +.|.+.....+...
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 4599999999999999999999865421111 011 22333333344557
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021699 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 86 g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
+..+.||||||..+. .... ...+ ..+|++|+|++++. .......+.+..+.. .+. +++++|+||+|
T Consensus 103 ~~~~~iiDtpGh~~f---~~~~----~~~~--~~aD~~ilVvDa~~-g~~~qt~~~l~~~~~-~~~---~~iIvviNK~D 168 (434)
T 1zun_B 103 KRKFIIADTPGHEQY---TRNM----ATGA--STCDLAIILVDARY-GVQTQTRRHSYIASL-LGI---KHIVVAINKMD 168 (434)
T ss_dssp SEEEEEEECCCSGGG---HHHH----HHHH--TTCSEEEEEEETTT-CSCHHHHHHHHHHHH-TTC---CEEEEEEECTT
T ss_pred CceEEEEECCChHHH---HHHH----HHHH--hhCCEEEEEEECCC-CCcHHHHHHHHHHHH-cCC---CeEEEEEEcCc
Confidence 789999999998432 1222 2222 68999999988754 345556666654443 332 46999999999
Q ss_pred CCC
Q 021699 166 LSL 168 (309)
Q Consensus 166 ~~~ 168 (309)
+.+
T Consensus 169 l~~ 171 (434)
T 1zun_B 169 LNG 171 (434)
T ss_dssp TTT
T ss_pred CCc
Confidence 863
No 161
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.49 E-value=2.4e-13 Score=131.73 Aligned_cols=115 Identities=11% Similarity=0.130 Sum_probs=79.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccc---------------ccC------CCCCCCeeEEEEeeeCCeEEEEEeCCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT---------------VST------FQSEGPRPVMVSRSRAGFTLNIVDTPG 96 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~---------------~~~------~~~~t~~~~~~~~~~~g~~l~liDTPG 96 (309)
...+|+|+|.+|+|||||+|+|++..... +.+ ..+.|.......+.+.+..+.||||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 35799999999999999999997221110 111 133455555566778899999999999
Q ss_pred CCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 97 ~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+.+.. ......+ ..+|++|+|++... .....+..++..+... + .|+++|+||+|+.
T Consensus 92 ~~df~---~~~~~~l------~~aD~allVvDa~~-g~~~~t~~~~~~~~~~-~----iPiivviNK~Dl~ 147 (528)
T 3tr5_A 92 HADFT---EDTYRTL------TAVDSALMVIDAAK-GVEPRTIKLMEVCRLR-H----TPIMTFINKMDRD 147 (528)
T ss_dssp STTCC---HHHHHGG------GGCSEEEEEEETTT-CSCHHHHHHHHHHHTT-T----CCEEEEEECTTSC
T ss_pred chhHH---HHHHHHH------HhCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-C----CCEEEEEeCCCCc
Confidence 96543 2322222 58899999977654 4566666666555433 2 6999999999985
No 162
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.48 E-value=1.4e-13 Score=134.22 Aligned_cols=123 Identities=16% Similarity=0.271 Sum_probs=78.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcc--cccCCCCCCCeeEEEEee---------------------------------
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAV--TVSTFQSEGPRPVMVSRS--------------------------------- 83 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~--~~~~~~~~t~~~~~~~~~--------------------------------- 83 (309)
.++|+|+|.+|+|||||+|+|+|.... .++..+.++.........
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~ 144 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM 144 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence 479999999999999999999998764 355555554321111100
Q ss_pred ---eCC---eEEEEEeCCCCCCCCC--CcH--HHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccc
Q 021699 84 ---RAG---FTLNIVDTPGLIEGGY--VNY--HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQI 153 (309)
Q Consensus 84 ---~~g---~~l~liDTPG~~~~~~--~~~--~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~ 153 (309)
+.+ ..+.||||||+.+... ... .+......++ ..+|++|+|++.+...+...+..+++.+...
T Consensus 145 ~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~----- 217 (550)
T 2qpt_A 145 CAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFA--ERVDLIILLFDAHKLEISDEFSEAIGALRGH----- 217 (550)
T ss_dssp EEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHH--HHCSEEEEEEETTSCCCCHHHHHHHHHTTTC-----
T ss_pred EEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHH--HhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc-----
Confidence 000 3589999999975321 110 0112222233 4789999998775434566777777666432
Q ss_pred cCcEEEEEecccCCC
Q 021699 154 WKRALIVLTHAQLSL 168 (309)
Q Consensus 154 ~~~~iiV~tk~D~~~ 168 (309)
..++++|+||+|+.+
T Consensus 218 ~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 218 EDKIRVVLNKADMVE 232 (550)
T ss_dssp GGGEEEEEECGGGSC
T ss_pred CCCEEEEEECCCccC
Confidence 268999999999863
No 163
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.7e-13 Score=135.02 Aligned_cols=161 Identities=14% Similarity=0.128 Sum_probs=96.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccC------------------------------CCCCCCeeEEEEeeeCC
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVST------------------------------FQSEGPRPVMVSRSRAG 86 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~------------------------------~~~~t~~~~~~~~~~~g 86 (309)
...++|+++|.+|+|||||+|+|++........ .++.|.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 457999999999999999999999774322211 13556655555666788
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc------cChhHHHHHHHHHHHhCccccCcEEEE
Q 021699 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIWKRALIV 160 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~------~~~~d~~~l~~l~~~~g~~~~~~~iiV 160 (309)
..+.||||||+.+ +...+... ...+|++|+|++++... ......+.+..+. ..+. +++|+|
T Consensus 245 ~~~~iiDTPG~e~-------f~~~~~~~--~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~-~lgi---~~iIVV 311 (611)
T 3izq_1 245 ANFTIVDAPGHRD-------FVPNAIMG--ISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS-SLGI---HNLIIA 311 (611)
T ss_dssp CEEEEEECCSSSC-------HHHHHTTT--SSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHH-TTTC---CEEEEE
T ss_pred ceEEEEECCCCcc-------cHHHHHHH--HhhcCceEEEEECCCCcccccchhhhHHHHHHHHHH-HcCC---CeEEEE
Confidence 8999999999843 11112112 26899999997775311 2234444443333 2232 469999
Q ss_pred EecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcc
Q 021699 161 LTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 224 (309)
Q Consensus 161 ~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~ 224 (309)
+||+|+.+.+...+++. .+.+..++.... +. ...+|++++|+. ++.+...
T Consensus 312 vNKiDl~~~~~~~~~ei----~~~l~~~l~~~g-~~-----~~~~~~i~vSA~----tG~gI~e 361 (611)
T 3izq_1 312 MNKMDNVDWSQQRFEEI----KSKLLPYLVDIG-FF-----EDNINWVPISGF----SGEGVYK 361 (611)
T ss_dssp EECTTTTTTCHHHHHHH----HHHHHHHHHHHT-CC-----GGGCEEEECCTT----TCTTTSS
T ss_pred EecccccchhHHHHHHH----HHHHHHHHHhhc-cc-----ccCccEEeeecc----cCCCccc
Confidence 99999864222122222 234444443221 11 123688888774 4544443
No 164
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.47 E-value=1e-13 Score=129.91 Aligned_cols=88 Identities=23% Similarity=0.239 Sum_probs=45.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEee---------------------eC---CeEEEEEeCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS---------------------RA---GFTLNIVDTP 95 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~---------------------~~---g~~l~liDTP 95 (309)
++|+++|.+|+|||||+|+|++.. +.+++.+++|..+...... ++ +.++.|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 589999999999999999999987 5777888888766544321 12 2579999999
Q ss_pred CCCCCCCCcHHHHHHHHHhh-hcCCCcEEEEEEeCCc
Q 021699 96 GLIEGGYVNYHAIQLIKRFL-LNKTIDVLLYVDRLDV 131 (309)
Q Consensus 96 G~~~~~~~~~~~~~~i~~~~-~~~~~d~il~v~~~d~ 131 (309)
|+.+.....+. ...+++ ..+.+|++++|+++..
T Consensus 80 G~~~~a~~~~~---l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 80 GLVPGAHEGRG---LGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp ------------------CCCSSTTCSEEEEEEETTC
T ss_pred Ccccchhhhhh---HHHHHHHHHhcCCEEEEEEeccc
Confidence 99653221111 112232 2368999999988754
No 165
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.47 E-value=3.6e-12 Score=119.99 Aligned_cols=167 Identities=14% Similarity=0.143 Sum_probs=99.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccc--ccCCCCCCCeeEEEEeee---------------C--------CeEEEEE
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT--VSTFQSEGPRPVMVSRSR---------------A--------GFTLNIV 92 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~--~~~~~~~t~~~~~~~~~~---------------~--------g~~l~li 92 (309)
..++|+++|.+++|||||+|+|+|..... ....++.|.........+ . ...+.||
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 46999999999999999999999764221 112233444332211111 1 1679999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCC
Q 021699 93 DTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 172 (309)
Q Consensus 93 DTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~ 172 (309)
||||.. .+...+...+ ..+|++|+|++++......+..+.+..+... +. +++++|+||+|+.+.+
T Consensus 89 DtPGh~-------~f~~~~~~~~--~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~---~~iivviNK~Dl~~~~-- 153 (410)
T 1kk1_A 89 DAPGHE-------ALMTTMLAGA--SLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELVDKE-- 153 (410)
T ss_dssp ECSSHH-------HHHHHHHHCG--GGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCHH--
T ss_pred ECCChH-------HHHHHHHhhh--hhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CC---CcEEEEEECccCCCHH--
Confidence 999972 2222222222 4779999998876421145555555554433 32 5899999999986321
Q ss_pred CHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhc
Q 021699 173 DYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246 (309)
Q Consensus 173 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~ 246 (309)
+ .....+.+++++.... ...+|++.+|+. ++.+ ++.|++.+...++.
T Consensus 154 ---~-~~~~~~~i~~~l~~~~--------~~~~~~i~vSA~----~g~g-----------i~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 154 ---K-ALENYRQIKEFIEGTV--------AENAPIIPISAL----HGAN-----------IDVLVKAIEDFIPT 200 (410)
T ss_dssp ---H-HHHHHHHHHHHHTTST--------TTTCCEEECBTT----TTBS-----------HHHHHHHHHHHSCC
T ss_pred ---H-HHHHHHHHHHHHHhcC--------cCCCeEEEeeCC----CCCC-----------HHHHHHHHHHhCCC
Confidence 1 1111244555554321 123788888763 3333 78888888876653
No 166
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.47 E-value=5.4e-13 Score=133.28 Aligned_cols=127 Identities=20% Similarity=0.309 Sum_probs=82.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEE-----------------------------------
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVS----------------------------------- 81 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~----------------------------------- 81 (309)
....+|+|+|.+++|||||+|+|+|.+..+.+.. .+|+.+....
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g-~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSS-CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCc-cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 3457999999999999999999999876444432 2333332221
Q ss_pred ----------------eee-CCeEEEEEeCCCCCCCCC---Cc---HHHHHHHHHhhhcCCCcEEEEEEeCCccccChhH
Q 021699 82 ----------------RSR-AGFTLNIVDTPGLIEGGY---VN---YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD 138 (309)
Q Consensus 82 ----------------~~~-~g~~l~liDTPG~~~~~~---~~---~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d 138 (309)
+.. +...+.||||||+..... .. ....+.+..++. ..+|++|+|++... .+...|
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~-~~aDlIL~VVDAs~-~~~~~d 205 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANS-DLANSD 205 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-STTEEEEEEEETTS-CSSSCH
T ss_pred hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEEEcCCC-CcchhH
Confidence 111 233588999999986321 11 233344455554 68899999966543 345556
Q ss_pred H-HHHHHHHHHhCccccCcEEEEEecccCCCCCC
Q 021699 139 K-QITRAITDNFGEQIWKRALIVLTHAQLSLPDR 171 (309)
Q Consensus 139 ~-~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~ 171 (309)
. .+++.+... ..|+++|+||+|+.++..
T Consensus 206 ~l~ll~~L~~~-----g~pvIlVlNKiDlv~~~~ 234 (772)
T 3zvr_A 206 ALKIAKEVDPQ-----GQRTIGVITKLDLMDEGT 234 (772)
T ss_dssp HHHHHHHHCTT-----CSSEEEEEECTTSSCTTC
T ss_pred HHHHHHHHHhc-----CCCEEEEEeCcccCCcch
Confidence 5 566555432 279999999999975543
No 167
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.46 E-value=1.7e-13 Score=130.89 Aligned_cols=117 Identities=13% Similarity=0.188 Sum_probs=73.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCc-cc-----------------------ccC------CCCCCCeeEEEEeeeCCe
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKA-VT-----------------------VST------FQSEGPRPVMVSRSRAGF 87 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~-~~-----------------------~~~------~~~~t~~~~~~~~~~~g~ 87 (309)
..++|+++|.+|+|||||+|+|++... .. +.+ ..+.|.+.....+...+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 469999999999999999999986410 00 000 134454444445666788
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc----cC--hhHHHHHHHHHHHhCccccCcEEEEE
Q 021699 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR----VD--NLDKQITRAITDNFGEQIWKRALIVL 161 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~----~~--~~d~~~l~~l~~~~g~~~~~~~iiV~ 161 (309)
.+.||||||..+ +...+...+ ..+|++|+|++++... +. ....+.+..+. ..+. +++|+|+
T Consensus 86 ~~~iiDtPGh~~-------f~~~~~~~~--~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~-~~~v---~~iivvi 152 (458)
T 1f60_A 86 QVTVIDAPGHRD-------FIKNMITGT--SQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-TLGV---RQLIVAV 152 (458)
T ss_dssp EEEEEECCCCTT-------HHHHHHHSS--SCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-HTTC---CEEEEEE
T ss_pred eEEEEECCCcHH-------HHHHHHhhh--hhCCEEEEEEeCCcCccccccCcchhHHHHHHHHH-HcCC---CeEEEEE
Confidence 999999999742 222222222 6899999997775311 11 13344433332 2231 3599999
Q ss_pred ecccCC
Q 021699 162 THAQLS 167 (309)
Q Consensus 162 tk~D~~ 167 (309)
||+|+.
T Consensus 153 NK~Dl~ 158 (458)
T 1f60_A 153 NKMDSV 158 (458)
T ss_dssp ECGGGG
T ss_pred Eccccc
Confidence 999986
No 168
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.45 E-value=7.1e-12 Score=105.23 Aligned_cols=119 Identities=17% Similarity=0.113 Sum_probs=76.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeE--EEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT--LNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~--l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.++|+++|.+|+|||||+|.+++.... ....+..+.......+.++|.. +.+|||||..........+ .
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~-~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~---~----- 99 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY---Y----- 99 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHH---H-----
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHH---h-----
Confidence 589999999999999999999987642 2223333444455566677765 4569999986544333221 1
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
..++++++|+++........-..++..+.+... ...++++|+||+|+...
T Consensus 100 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~ 149 (191)
T 1oix_A 100 -RGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHL 149 (191)
T ss_dssp -TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGG
T ss_pred -hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccc
Confidence 578899999776532110111234444444322 22689999999998543
No 169
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.45 E-value=1.4e-12 Score=122.25 Aligned_cols=174 Identities=11% Similarity=0.099 Sum_probs=101.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCc------cc----cc-----CCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKA------VT----VS-----TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 102 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~------~~----~~-----~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~ 102 (309)
.+++|+++|.+|+|||||+|+|++... +. .. ...+.|.......+...+..+.||||||..+
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~--- 78 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD--- 78 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH---
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH---
Confidence 468999999999999999999997410 00 00 0122233333334455678999999999832
Q ss_pred CcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCc-EEEEEecccCCCCCCCCHHHHHHhh
Q 021699 103 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLSLPDRLDYEVFCSKR 181 (309)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~-~iiV~tk~D~~~~~~~~~~~~~~~~ 181 (309)
+...+...+ ..+|++|+|++++. ....+..+.+..+.. .+ .| +++|+||+|+.. + ++..+..
T Consensus 79 ----f~~~~~~~~--~~aD~~ilVvda~~-g~~~qt~e~l~~~~~-~~----vp~iivviNK~Dl~~-~----~~~~~~~ 141 (397)
T 1d2e_A 79 ----YVKNMITGT--APLDGCILVVAAND-GPMPQTREHLLLARQ-IG----VEHVVVYVNKADAVQ-D----SEMVELV 141 (397)
T ss_dssp ----HHHHHHHTS--SCCSEEEEEEETTT-CSCHHHHHHHHHHHH-TT----CCCEEEEEECGGGCS-C----HHHHHHH
T ss_pred ----HHHHHHhhH--hhCCEEEEEEECCC-CCCHHHHHHHHHHHH-cC----CCeEEEEEECcccCC-C----HHHHHHH
Confidence 222222222 68999999988754 345555666654443 23 45 789999999863 1 1122212
Q ss_pred hHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCc----hHHHHHHHHHHHhc
Q 021699 182 SEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW----IPNLVKTITEVVLN 246 (309)
Q Consensus 182 ~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w----~~~L~~~i~~~~~~ 246 (309)
.+.+++++... .+. ...+|++++|+. ++.+. ....| +..|++.+...++.
T Consensus 142 ~~~~~~~l~~~-~~~-----~~~~~~i~~SA~----~g~n~-----~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 142 ELEIRELLTEF-GYK-----GEETPIIVGSAL----CALEQ-----RDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp HHHHHHHHHHT-TSC-----TTTSCEEECCHH----HHHTT-----CCTTTTHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHc-CCC-----cccCcEEEeehh----hcccc-----cCCCccCCcHHHHHHHHHHhCCC
Confidence 23444554332 111 123788888774 22211 11235 66788888776653
No 170
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.44 E-value=7.5e-12 Score=117.73 Aligned_cols=167 Identities=18% Similarity=0.163 Sum_probs=94.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccccc--CCCCCCCeeEEEEeee---------------C--------CeEEEEE
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVS--TFQSEGPRPVMVSRSR---------------A--------GFTLNIV 92 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~--~~~~~t~~~~~~~~~~---------------~--------g~~l~li 92 (309)
..++|+++|..++|||||+|+|+|....... ..++.|.......... . ...+.||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 4699999999999999999999976422111 1233344322111111 1 1679999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCC
Q 021699 93 DTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 172 (309)
Q Consensus 93 DTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~ 172 (309)
||||.. .+...+.+ ....+|++|+|++++.........+.+..+. ..+. +|+++|+||+|+.+.+..
T Consensus 87 DtPGh~-------~f~~~~~~--~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~l~~---~~iivv~NK~Dl~~~~~~ 153 (408)
T 1s0u_A 87 DSPGHE-------TLMATMLS--GASLMDGAILVIAANEPCPQPQTKEHLMALE-ILGI---DKIIIVQNKIDLVDEKQA 153 (408)
T ss_dssp ECSSHH-------HHHHHHHT--TCSCCSEEEEEEETTSCSSCHHHHHHHHHHH-HTTC---CCEEEEEECTTSSCTTTT
T ss_pred ECCCHH-------HHHHHHHH--hHhhCCEEEEEEECCCCCCCchhHHHHHHHH-HcCC---CeEEEEEEccCCCCHHHH
Confidence 999962 22222211 1257899999988764212455555555443 3332 589999999999754321
Q ss_pred CHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhc
Q 021699 173 DYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 246 (309)
Q Consensus 173 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~ 246 (309)
.+. .+.+++++.... ...+|++.+|+. ++.+ +++|++.+...++.
T Consensus 154 --~~~----~~~i~~~l~~~~--------~~~~~~i~vSA~----~g~g-----------i~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 154 --EEN----YEQIKEFVKGTI--------AENAPIIPISAH----HEAN-----------IDVLLKAIQDFIPT 198 (408)
T ss_dssp --TTH----HHHHHHHHTTST--------TTTCCEEEC----------C-----------HHHHHHHHHHHSCC
T ss_pred --HHH----HHHHHHHHhhcC--------CCCCeEEEeeCC----CCCC-----------HHHHHHHHHHhCCC
Confidence 111 133444444320 123688888763 3332 78888888876553
No 171
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.44 E-value=3.2e-12 Score=118.68 Aligned_cols=133 Identities=14% Similarity=0.108 Sum_probs=86.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
+|+++|.+++|||||+|+|+ ..+.|.+.....+...+..+.||||||..+. .......+ ..+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f---~~~~~~~~------~~a 84 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKT---LKSLITAL------NIS 84 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTC---HHHHHHHH------HTC
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHH---HHHHHHHH------HHC
Confidence 99999999999999999999 1223344445556677889999999999543 22222223 489
Q ss_pred cEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcE-EEEEe-cccCCCCCCCCHHHHHHhhhHHHHHhhccccccccc
Q 021699 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRA-LIVLT-HAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKK 198 (309)
Q Consensus 121 d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~-iiV~t-k~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 198 (309)
|++++|++ +. ....+..+.+..+.. .+ .|. ++|+| |+|+ ++ ++.+...+.+++++....
T Consensus 85 D~ailVvd-~~-g~~~qt~e~~~~~~~-~~----i~~~ivvvNNK~Dl-~~------~~~~~~~~~i~~~l~~~~----- 145 (370)
T 2elf_A 85 DIAVLCIP-PQ-GLDAHTGECIIALDL-LG----FKHGIIALTRSDST-HM------HAIDELKAKLKVITSGTV----- 145 (370)
T ss_dssp SEEEEEEC-TT-CCCHHHHHHHHHHHH-TT----CCEEEEEECCGGGS-CH------HHHHHHHHHHHHHTTTST-----
T ss_pred CEEEEEEc-CC-CCcHHHHHHHHHHHH-cC----CCeEEEEEEeccCC-CH------HHHHHHHHHHHHHHHhcC-----
Confidence 99999977 43 455566666655543 33 455 88999 9998 32 122222345555554321
Q ss_pred ccccCCCcEEE--eccc
Q 021699 199 DIQGSFVPVVL--VENS 213 (309)
Q Consensus 199 ~~~~~~ipv~~--v~~~ 213 (309)
...+|+++ +|+.
T Consensus 146 ---~~~~~ii~~~~SA~ 159 (370)
T 2elf_A 146 ---LQDWECISLNTNKS 159 (370)
T ss_dssp ---TTTCEEEECCCCTT
T ss_pred ---CCceEEEecccccc
Confidence 12368888 7764
No 172
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.43 E-value=3.3e-14 Score=137.60 Aligned_cols=115 Identities=13% Similarity=0.124 Sum_probs=80.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL 116 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~-~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~ 116 (309)
.+.+|+++|.+|+|||||+|+|.+.... ....++.|.+........ ++..+.||||||..++...... +
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~-~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~-------~-- 72 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVA-AMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRAR-------G-- 72 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHH-HSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBS-------S--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc-cccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHH-------H--
Confidence 4689999999999999999999987642 334455555544444444 5678999999998655433221 1
Q ss_pred cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 117 NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 117 ~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
...+|++++|++++. .......+.+..+... + .|+++|+||+|+.+
T Consensus 73 ~~~aD~vILVVDa~d-g~~~qt~e~l~~~~~~-~----vPiIVViNKiDl~~ 118 (537)
T 3izy_P 73 TQVTDIVILVVAADD-GVMKQTVESIQHAKDA-H----VPIVLAINKCDKAE 118 (537)
T ss_dssp SBSBSSCEEECBSSS-CCCHHHHHHHHHHHTT-T----CCEEECCBSGGGTT
T ss_pred HccCCEEEEEEECCC-CccHHHHHHHHHHHHc-C----CcEEEEEecccccc
Confidence 157899999977654 4556666666555432 2 68999999999864
No 173
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.43 E-value=9.9e-12 Score=105.38 Aligned_cols=121 Identities=19% Similarity=0.234 Sum_probs=69.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCC-cccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHH
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKR 113 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~-~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~---~~~~~~i~~ 113 (309)
...+|+++|++|+|||||+|+|+|.. ...+.+.++++..... ..+++ .+.++||||+.+..... +.+...+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEEET-TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEecC-CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 45899999999999999999999976 3334455555554332 22333 68899999986432111 122222333
Q ss_pred hhh-cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 114 FLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 114 ~~~-~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++. ...++++++++++.. ..+..+.++...+.. .+ .|+++|.||+|+.
T Consensus 102 ~~~~~~~~~~~~~v~d~~~-~~~~~~~~~~~~~~~-~~----~~~~~v~nK~D~~ 150 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRH-PLKDLDQQMIEWAVD-SN----IAVLVLLTKADKL 150 (210)
T ss_dssp HHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHH-TT----CCEEEEEECGGGS
T ss_pred HHHhhhcccEEEEEEECCC-CCchhHHHHHHHHHH-cC----CCeEEEEecccCC
Confidence 332 257899999977753 234444445544432 22 6889999999975
No 174
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.42 E-value=1.2e-12 Score=124.16 Aligned_cols=155 Identities=15% Similarity=0.188 Sum_probs=86.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccc------------------------------cCCCCCCCeeEEEEeeeCCe
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTV------------------------------STFQSEGPRPVMVSRSRAGF 87 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~------------------------------~~~~~~t~~~~~~~~~~~g~ 87 (309)
..++|+++|.+|+|||||+|+|++...... ....+.|.......+...+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 569999999999999999999986411000 00234454444445566788
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc------cChhHHHHHHHHHHHhCccccCcEEEEE
Q 021699 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIWKRALIVL 161 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~------~~~~d~~~l~~l~~~~g~~~~~~~iiV~ 161 (309)
.+.||||||..+. ...+...+ ..+|++++|++++... ...+..+.+..+.. .+. +++++|+
T Consensus 85 ~~~iiDtpG~~~f-------~~~~~~~~--~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~---~~iivvi 151 (435)
T 1jny_A 85 FFTIIDAPGHRDF-------VKNMITGA--SQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGL---DQLIVAV 151 (435)
T ss_dssp EEEECCCSSSTTH-------HHHHHHTS--SCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTC---TTCEEEE
T ss_pred EEEEEECCCcHHH-------HHHHHhhh--hhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeEEEEE
Confidence 9999999998542 11222222 6899999998876522 22233333333322 231 4699999
Q ss_pred ecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEeccc
Q 021699 162 THAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENS 213 (309)
Q Consensus 162 tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~ 213 (309)
||+|+.+.+ .+.+ ..+...+.+++++.... +. ...+|++.+++.
T Consensus 152 NK~Dl~~~~-~~~~-~~~~~~~~i~~~~~~~~-~~-----~~~~~~i~iSA~ 195 (435)
T 1jny_A 152 NKMDLTEPP-YDEK-RYKEIVDQVSKFMRSYG-FN-----TNKVRFVPVVAP 195 (435)
T ss_dssp ECGGGSSST-TCHH-HHHHHHHHHHHHHHHTT-CC-----CTTCEEEECBTT
T ss_pred EcccCCCcc-ccHH-HHHHHHHHHHHHHHHcC-CC-----cCCceEEEeecc
Confidence 999986432 1111 11222344555554321 11 113678888764
No 175
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.40 E-value=7.8e-14 Score=137.04 Aligned_cols=154 Identities=14% Similarity=0.066 Sum_probs=74.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCccccc------------------------------CCCCCCCeeEEEEeeeCC
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVS------------------------------TFQSEGPRPVMVSRSRAG 86 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~------------------------------~~~~~t~~~~~~~~~~~g 86 (309)
...++|+++|.+|+|||||+|+|++....... ..++.|.+.....+...+
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 34689999999999999999999753211111 123445555555566677
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCcc----cc--ChhHHHHHHHHHHHhCccccCcEEEE
Q 021699 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY----RV--DNLDKQITRAITDNFGEQIWKRALIV 160 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~----~~--~~~d~~~l~~l~~~~g~~~~~~~iiV 160 (309)
..+.||||||+.+..... ...+ ..+|++|+|++++.. .+ .....+.+..+.. .|. +++|+|
T Consensus 255 ~~i~iiDTPGh~~f~~~~---~~~~------~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgi---p~iIvv 321 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGM---IAGA------SSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGI---SEIVVS 321 (592)
T ss_dssp ----CCEEESSSEEEEEC---CC-------------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSC---CCEEEE
T ss_pred eEEEEEECCChHHHHHHH---HHHH------hhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeEEEE
Confidence 899999999996532211 1111 478999999776532 23 4555555554443 332 359999
Q ss_pred EecccCCCCCCCCHHHHHHhhhHHHHHhh-cccccccccccccCCCcEEEeccc
Q 021699 161 LTHAQLSLPDRLDYEVFCSKRSEALLKFV-SPSTWMKKKDIQGSFVPVVLVENS 213 (309)
Q Consensus 161 ~tk~D~~~~~~~~~~~~~~~~~~~l~~~i-~~~~~~~~~~~~~~~ipv~~v~~~ 213 (309)
+||+|+.+.+. + ......+.+.+++ ... ++. ...+|++++|+.
T Consensus 322 iNKiDl~~~~~---~-~~~~i~~el~~~l~~~~-g~~-----~~~~~ii~iSA~ 365 (592)
T 3mca_A 322 VNKLDLMSWSE---D-RFQEIKNIVSDFLIKMV-GFK-----TSNVHFVPISAI 365 (592)
T ss_dssp EECGGGGTTCH---H-HHHHHHHHHHHHHTTTS-CCC-----GGGEEEEEECSS
T ss_pred EeccccccccH---H-HHHHHHHHHHHHHHHhh-CCC-----ccceEEEEEecc
Confidence 99999864221 1 1222234455555 221 221 123688888874
No 176
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.36 E-value=6.6e-12 Score=123.16 Aligned_cols=115 Identities=10% Similarity=0.077 Sum_probs=74.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCe--eEEEEee----------------eCCeEEEEEeCCCCCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPR--PVMVSRS----------------RAGFTLNIVDTPGLIE 99 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~--~~~~~~~----------------~~g~~l~liDTPG~~~ 99 (309)
.+.+|+++|.+|+|||||+|+|++...... ...+.|.. ....... +....+.||||||..+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~-e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASR-EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccc-cCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 468999999999999999999997643111 11122222 1121111 1122599999999976
Q ss_pred CCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 100 ~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+...... . ...+|++++|++++. .+.....+.+..+... + .|+++|+||+|+.+
T Consensus 83 F~~~~~r-------~--~~~aD~aILVvDa~~-Gv~~qT~e~l~~l~~~-~----vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 83 FTTLRKR-------G--GALADLAILIVDINE-GFKPQTQEALNILRMY-R----TPFVVAANKIDRIH 136 (594)
T ss_dssp CTTSBCS-------S--SBSCSEEEEEEETTT-CCCHHHHHHHHHHHHT-T----CCEEEEEECGGGST
T ss_pred HHHHHHH-------H--HhhCCEEEEEEECCC-CccHhHHHHHHHHHHc-C----CeEEEEeccccccc
Confidence 5443221 1 147899999988764 4556666666655442 2 69999999999853
No 177
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.35 E-value=3.4e-11 Score=124.20 Aligned_cols=173 Identities=13% Similarity=0.103 Sum_probs=99.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCc------cc----c-----cCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKA------VT----V-----STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~------~~----~-----~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
...++|+++|.+|+|||||+|+|++... +. . ....+.|.......+...+..+.||||||..+
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed-- 371 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD-- 371 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH--
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH--
Confidence 4569999999999999999999997410 00 0 01122333322334445678999999999842
Q ss_pred CCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCc-EEEEEecccCCCCCCCCHHHHHHh
Q 021699 102 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLSLPDRLDYEVFCSK 180 (309)
Q Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~-~iiV~tk~D~~~~~~~~~~~~~~~ 180 (309)
+...+... ...+|++|+|++++. ....+..+.+..+... + .| +|+|+||+|+.+. ++..+.
T Consensus 372 -----F~~~mi~g--as~AD~aILVVDAtd-Gv~~QTrEhL~ll~~l-g----IP~IIVVINKiDLv~d-----~e~le~ 433 (1289)
T 3avx_A 372 -----YVKNMITG--AAQMDGAILVVAATD-GPMPQTREHILLGRQV-G----VPYIIVFLNKCDMVDD-----EELLEL 433 (1289)
T ss_dssp -----HHHHHHHT--SCCCSEEEEEEETTT-CSCTTHHHHHHHHHHH-T----CSCEEEEEECCTTCCC-----HHHHHH
T ss_pred -----HHHHHHHH--HhhCCEEEEEEcCCc-cCcHHHHHHHHHHHHc-C----CCeEEEEEeecccccc-----hhhHHH
Confidence 22222222 268999999988764 3445666666555443 3 45 8999999998631 111111
Q ss_pred hhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCc---hHHHHHHHHHHHh
Q 021699 181 RSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW---IPNLVKTITEVVL 245 (309)
Q Consensus 181 ~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w---~~~L~~~i~~~~~ 245 (309)
..+.+++++.... +. ...+|++.+++. ++.+. ..+| +.+|++.+...++
T Consensus 434 i~eEi~elLk~~G-~~-----~~~vp~IpvSAk----tG~ng------~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 434 VEMEVRELLSQYD-FP-----GDDTPIVRGSAL----KALEG------DAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHHHHHHHHHHTT-SC-----TTTCCEEECCST----TTTTC------CHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhcc-cc-----ccceeEEEEEec----cCCCC------CccccccchhhHhHHhhhcC
Confidence 1234444443321 11 123788888774 22111 0124 5667777776554
No 178
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.34 E-value=5.5e-11 Score=111.77 Aligned_cols=163 Identities=17% Similarity=0.232 Sum_probs=101.6
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-eEEEEEeCCCCCCCCC----CcHHHHHHHHHhh
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGY----VNYHAIQLIKRFL 115 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-~~l~liDTPG~~~~~~----~~~~~~~~i~~~~ 115 (309)
.|+|+|.+|+|||||+|+|++... .+...+.+|..+....+..++ ..+.++||||+.+... .....+..+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~---- 233 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHI---- 233 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH----
T ss_pred EEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHH----
Confidence 579999999999999999999864 456666777777666666665 7899999999965311 222222222
Q ss_pred hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccc
Q 021699 116 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWM 195 (309)
Q Consensus 116 ~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 195 (309)
.+++++|++++++...+. .-..+.+.+......-..+|.++|+||+|+... +.. +.+++.+...
T Consensus 234 --era~~lL~vvDls~~~~~-~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~------~~~----~~l~~~l~~~--- 297 (416)
T 1udx_A 234 --ARTRVLLYVLDAADEPLK-TLETLRKEVGAYDPALLRRPSLVALNKVDLLEE------EAV----KALADALARE--- 297 (416)
T ss_dssp --TSSSEEEEEEETTSCHHH-HHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH------HHH----HHHHHHHHTT---
T ss_pred --HHHHhhhEEeCCccCCHH-HHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH------HHH----HHHHHHHHhc---
Confidence 589999999877511121 112233333332111123799999999997521 111 2333333321
Q ss_pred cccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021699 196 KKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 196 ~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
+.+++++++. ++.+ +.+|++.+...+...
T Consensus 298 --------g~~vi~iSA~----~g~g-----------i~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 298 --------GLAVLPVSAL----TGAG-----------LPALKEALHALVRST 326 (416)
T ss_dssp --------TSCEEECCTT----TCTT-----------HHHHHHHHHHHHHTS
T ss_pred --------CCeEEEEECC----CccC-----------HHHHHHHHHHHHHhc
Confidence 2578877763 3332 788888888777654
No 179
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.32 E-value=7.2e-12 Score=113.75 Aligned_cols=120 Identities=17% Similarity=0.188 Sum_probs=68.7
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 120 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (309)
||+++|.+||||||+++.+++.-..........|......... ...++.||||||..+.....-.. ..+. +++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~----~~yy--r~a 73 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDS----ERLF--KSV 73 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHH----HHHH--TTC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhh----hhhc--cCC
Confidence 6899999999999999998865321111111122211111221 33689999999997653211001 1122 699
Q ss_pred cEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 121 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 121 d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+++++|++++.. +...-..+.+.+..........|+++|+||+|+.+
T Consensus 74 ~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~ 120 (331)
T 3r7w_B 74 GALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLS 120 (331)
T ss_dssp SEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSC
T ss_pred CEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCc
Confidence 999999777643 33332233222322111111268999999999963
No 180
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.31 E-value=8.4e-12 Score=119.39 Aligned_cols=116 Identities=11% Similarity=0.065 Sum_probs=65.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccc------------------------ccC------CCCCCCeeEEEEeeeCCe
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT------------------------VST------FQSEGPRPVMVSRSRAGF 87 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~------------------------~~~------~~~~t~~~~~~~~~~~g~ 87 (309)
..++|+++|.+++|||||+|+|+...... +.+ ..+.|.......+..++.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 56999999999999999999997421100 000 122333333334556788
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc----cC--hhHHHHHHHHHHHhCccccCc-EEEE
Q 021699 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR----VD--NLDKQITRAITDNFGEQIWKR-ALIV 160 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~----~~--~~d~~~l~~l~~~~g~~~~~~-~iiV 160 (309)
.+.||||||..+... . +...+ ..+|++|+|++++... +. ....+.+..+. ..| .| +|+|
T Consensus 122 ~~~iiDtPGh~~f~~---~----~~~~~--~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~~~----vp~iivv 187 (467)
T 1r5b_A 122 RFSLLDAPGHKGYVT---N----MINGA--SQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQG----INHLVVV 187 (467)
T ss_dssp EEEECCCCC------------------T--TSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HTT----CSSEEEE
T ss_pred EEEEEECCCcHHHHH---H----HHhhc--ccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-HcC----CCEEEEE
Confidence 999999999854321 1 11111 5899999998875421 11 23444443332 223 44 9999
Q ss_pred EecccCC
Q 021699 161 LTHAQLS 167 (309)
Q Consensus 161 ~tk~D~~ 167 (309)
+||+|+.
T Consensus 188 iNK~Dl~ 194 (467)
T 1r5b_A 188 INKMDEP 194 (467)
T ss_dssp EECTTST
T ss_pred EECccCC
Confidence 9999985
No 181
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.30 E-value=2.6e-11 Score=118.76 Aligned_cols=161 Identities=11% Similarity=0.155 Sum_probs=89.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccc--------cC------CCCCCCeeEEEEeee---CC--eEEEEEeCCCCCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTV--------ST------FQSEGPRPVMVSRSR---AG--FTLNIVDTPGLIE 99 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~--------~~------~~~~t~~~~~~~~~~---~g--~~l~liDTPG~~~ 99 (309)
-.+|+++|.+|+|||||+|+|+....... .+ ..+.|.........+ +| ..++||||||..+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 46999999999999999999985321110 00 112222222222323 22 5789999999955
Q ss_pred CCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHH
Q 021699 100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCS 179 (309)
Q Consensus 100 ~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~ 179 (309)
+ ..+....+ ..+|++|+|++.+. .........+...... + .|+++|+||+|+... +.++..
T Consensus 86 F---~~ev~r~l------~~aD~aILVVDa~~-gv~~qt~~~~~~a~~~-~----ipiIvviNKiDl~~a---~~~~v~- 146 (600)
T 2ywe_A 86 F---SYEVSRAL------AACEGALLLIDASQ-GIEAQTVANFWKAVEQ-D----LVIIPVINKIDLPSA---DVDRVK- 146 (600)
T ss_dssp G---HHHHHHHH------HTCSEEEEEEETTT-BCCHHHHHHHHHHHHT-T----CEEEEEEECTTSTTC---CHHHHH-
T ss_pred H---HHHHHHHH------HhCCEEEEEEECCC-CccHHHHHHHHHHHHC-C----CCEEEEEeccCcccc---CHHHHH-
Confidence 3 22222233 47899999977654 3444554444333322 2 689999999998532 233221
Q ss_pred hhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021699 180 KRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 180 ~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
+.+.+.+. +. ..+++.+|+. ++.+ +.+|++.+...++..
T Consensus 147 ---~el~~~lg----~~-------~~~vi~vSAk----tg~G-----------I~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 147 ---KQIEEVLG----LD-------PEEAILASAK----EGIG-----------IEEILEAIVNRIPPP 185 (600)
T ss_dssp ---HHHHHTSC----CC-------GGGCEECBTT----TTBS-----------HHHHHHHHHHHSCCC
T ss_pred ---HHHHHhhC----CC-------cccEEEEEee----cCCC-----------chHHHHHHHHhcccc
Confidence 23333321 11 1246666553 3433 788998888877654
No 182
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.30 E-value=9e-13 Score=126.53 Aligned_cols=115 Identities=13% Similarity=0.079 Sum_probs=79.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhc
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN 117 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~ 117 (309)
.+.+|+++|.+++|||||+|+|.+... ..+..++.|.+...+.+.+++..+.||||||..++...... ..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v-~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~---------~~ 72 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKV-ASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRAR---------GA 72 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHH-SBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCS---------SS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCC-ccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHH---------HH
Confidence 468999999999999999999997543 22333444544444455567788999999999665433211 11
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+|++++|++++. .......+.+..+... + .|+++++||+|+..
T Consensus 73 ~~aD~aILVVda~~-g~~~qT~e~l~~~~~~-~----vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 73 QATDIVVLVVAADD-GVMPQTIEAIQHAKAA-Q----VPVVVAVNKIDKPE 117 (501)
T ss_dssp BSCSSEEEEEETTT-BSCTTTHHHHHHHHHT-T----CCEEEEEECSSSST
T ss_pred hhCCEEEEEeeccc-CccHHHHHHHHHHHhc-C----ceEEEEEEeccccc
Confidence 57899999988764 3444555555444332 2 68999999999853
No 183
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.30 E-value=1.8e-11 Score=122.40 Aligned_cols=116 Identities=17% Similarity=0.179 Sum_probs=77.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccc-----------ccC------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT-----------VST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~-----------~~~------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~ 100 (309)
...+|+|+|.+|+|||||+|+|++..... +.+ ..+.|.........+++..+.||||||+.+.
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 45899999999999999999999421110 111 1233333344556678899999999999653
Q ss_pred CCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+....+ ..+|++|+|++... ..+..+...+..+.+. + .|+++|+||+|+..
T Consensus 89 ---~~~~~~~l------~~aD~~llVvDa~~-g~~~~~~~~~~~~~~~-~----~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 89 ---TVEVERSL------RVLDGAVTVLDAQS-GVEPQTETVWRQATTY-G----VPRIVFVNKMDKLG 141 (693)
T ss_dssp ---CHHHHHHH------HHCSEEEEEEETTT-BSCHHHHHHHHHHHHT-T----CCEEEEEECTTSTT
T ss_pred ---HHHHHHHH------HHCCEEEEEECCCC-CCcHHHHHHHHHHHHc-C----CCEEEEEECCCccc
Confidence 33333334 36899999977653 4566666666665543 2 79999999999864
No 184
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.30 E-value=1.1e-11 Score=120.17 Aligned_cols=116 Identities=14% Similarity=0.144 Sum_probs=74.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccc---------------ccC------CCCCCCeeEEEEeeeCCeEEEEEeCCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT---------------VST------FQSEGPRPVMVSRSRAGFTLNIVDTPG 96 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~---------------~~~------~~~~t~~~~~~~~~~~g~~l~liDTPG 96 (309)
...+|+++|.+|+|||||+|+|++..... +.+ ..+.|.......+.+.+..+.||||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 45899999999999999999999642111 000 112222223345667889999999999
Q ss_pred CCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 97 LIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 97 ~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
..+.. .... +++ ..+|++|+|++... ........+++.+... ..|+++|+||+|+..
T Consensus 92 ~~df~---~~~~----~~l--~~aD~~IlVvDa~~-g~~~~t~~~~~~~~~~-----~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 92 HEDFS---EDTY----RTL--TAVDCCLMVIDAAK-GVEDRTRKLMEVTRLR-----DTPILTFMNKLDRDI 148 (529)
T ss_dssp STTCC---HHHH----HGG--GGCSEEEEEEETTT-CSCHHHHHHHHHHTTT-----TCCEEEEEECTTSCC
T ss_pred ChhHH---HHHH----HHH--HHCCEEEEEEeCCc-cchHHHHHHHHHHHHc-----CCCEEEEEcCcCCcc
Confidence 96543 2222 222 58999999977653 3444444444433221 268999999999853
No 185
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.29 E-value=2.6e-11 Score=118.86 Aligned_cols=161 Identities=15% Similarity=0.149 Sum_probs=88.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCccccc--------C------CCCCCCeeEEEEeeeC-----CeEEEEEeCCCCCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVS--------T------FQSEGPRPVMVSRSRA-----GFTLNIVDTPGLIE 99 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~--------~------~~~~t~~~~~~~~~~~-----g~~l~liDTPG~~~ 99 (309)
-.+|+|+|..|+|||||+++|+........ + ..+.|.........+. +..+.||||||..+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 468999999999999999999863211110 0 1122333333334343 25799999999954
Q ss_pred CCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHH
Q 021699 100 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCS 179 (309)
Q Consensus 100 ~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~ 179 (309)
+ ..+....+ ..+|++|+|++++. +........+...... + .|+++|+||+|+... +.++..
T Consensus 84 F---~~ev~~~l------~~aD~aILVVDa~~-gv~~qt~~~~~~~~~~-~----ipiIvViNKiDl~~a---~~~~v~- 144 (599)
T 3cb4_D 84 F---SYEVSRSL------AACEGALLVVDAGQ-GVEAQTLANCYTAMEM-D----LEVVPVLNKIDLPAA---DPERVA- 144 (599)
T ss_dssp G---HHHHHHHH------HHCSEEEEEEETTT-CCCTHHHHHHHHHHHT-T----CEEEEEEECTTSTTC---CHHHHH-
T ss_pred H---HHHHHHHH------HHCCEEEEEEECCC-CCCHHHHHHHHHHHHC-C----CCEEEeeeccCcccc---cHHHHH-
Confidence 3 22222233 36899999977654 3444444444333322 2 689999999998533 233222
Q ss_pred hhhHHHHHhhcccccccccccccCCCcEEEecccCcccCCcCCcccCCCCCCchHHHHHHHHHHHhcC
Q 021699 180 KRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNG 247 (309)
Q Consensus 180 ~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~~~~~~~~l~~~~~w~~~L~~~i~~~~~~~ 247 (309)
+.+.+.+. +. ..+++.+++. ++.+ +.+|++.+...++..
T Consensus 145 ---~ei~~~lg----~~-------~~~vi~vSAk----tg~G-----------I~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 145 ---EEIEDIVG----ID-------ATDAVRCSAK----TGVG-----------VQDVLERLVRDIPPP 183 (599)
T ss_dssp ---HHHHHHTC----CC-------CTTCEEECTT----TCTT-----------HHHHHHHHHHHSCCC
T ss_pred ---HHHHHHhC----CC-------cceEEEeecc----cCCC-----------chhHHHHHhhcCCCc
Confidence 23333332 11 1246666653 3333 788888888877653
No 186
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.28 E-value=6.9e-12 Score=112.21 Aligned_cols=93 Identities=22% Similarity=0.353 Sum_probs=54.9
Q ss_pred ccccCCCChhhHHHHHHHHHHhhhc--CCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeE
Q 021699 11 WMGIQQFPPATQTKLLELLGKLKQE--NVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT 88 (309)
Q Consensus 11 ~~g~~~~~~~~~~~l~~~~~~~~~~--~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~ 88 (309)
..|+..+...+.+.+.+..++.... ...+++|+++|.+|+|||||+|+|+|...+.+++.+++|+...... . +..
T Consensus 90 ~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~ 166 (282)
T 1puj_A 90 GQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK--V-GKE 166 (282)
T ss_dssp CTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE--E-TTT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEE--e-CCC
Confidence 4455554444444443332222222 2357999999999999999999999998888888888887665332 2 447
Q ss_pred EEEEeCCCCCCCCCCcHH
Q 021699 89 LNIVDTPGLIEGGYVNYH 106 (309)
Q Consensus 89 l~liDTPG~~~~~~~~~~ 106 (309)
+.++||||+......+++
T Consensus 167 ~~l~DtpG~~~~~~~~~~ 184 (282)
T 1puj_A 167 LELLDTPGILWPKFEDEL 184 (282)
T ss_dssp EEEEECCCCCCSCCCCHH
T ss_pred EEEEECcCcCCCCCCCHH
Confidence 999999999877655543
No 187
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.27 E-value=6e-12 Score=116.25 Aligned_cols=176 Identities=15% Similarity=0.181 Sum_probs=94.6
Q ss_pred HHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHh------CCCcccccCCCCCCCee-----------------EEE
Q 021699 24 KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSII------GEKAVTVSTFQSEGPRP-----------------VMV 80 (309)
Q Consensus 24 ~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~------g~~~~~~~~~~~~t~~~-----------------~~~ 80 (309)
...+++..+........+|+++|.+|+|||||+|+|. |.++..+...++.+... ...
T Consensus 64 ~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~ 143 (355)
T 3p32_A 64 QAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAY 143 (355)
T ss_dssp HHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEE
T ss_pred HHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCee
Confidence 3445566665555567999999999999999999996 33332222221111100 000
Q ss_pred E----------------------eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhH
Q 021699 81 S----------------------RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD 138 (309)
Q Consensus 81 ~----------------------~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d 138 (309)
. ....+..+.||||||+... ....+ ..+|++++|++.... +..
T Consensus 144 i~~~~~~~~~~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~------~~~~~------~~aD~vl~V~d~~~~---~~~ 208 (355)
T 3p32_A 144 IRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVGQS------EVAVA------NMVDTFVLLTLARTG---DQL 208 (355)
T ss_dssp EECCC--CCHHHHHHHHHHHHHHHHHTTCCEEEEEECSCSSH------HHHHH------TTCSEEEEEEESSTT---CTT
T ss_pred EEECCCCccccchhHHHHHHHHHHhhCCCCEEEEeCCCCCcH------HHHHH------HhCCEEEEEECCCCC---ccH
Confidence 0 1235678999999998431 11111 689999999765421 111
Q ss_pred HHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHHHHhhhHHHHHhhcccccccccccccCCCcEEEecccCcccC
Q 021699 139 KQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAK 218 (309)
Q Consensus 139 ~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ipv~~v~~~~~~~~ 218 (309)
..+...+ ...|.++|+||+|+.+.. ..+.. ...+++.+.... .. ......|++.+++. +
T Consensus 209 ~~l~~~~-------~~~p~ivVlNK~Dl~~~~--~~~~~----~~~l~~~l~~~~-~~---~~~~~~~vi~iSA~----~ 267 (355)
T 3p32_A 209 QGIKKGV-------LELADIVVVNKADGEHHK--EARLA----ARELSAAIRLIY-PR---EALWRPPVLTMSAV----E 267 (355)
T ss_dssp TTCCTTS-------GGGCSEEEEECCCGGGHH--HHHHH----HHHHHHHHHHHS-TT---CCSCCCCEEEEBGG----G
T ss_pred HHHHHhH-------hhcCCEEEEECCCCcChh--HHHHH----HHHHHHHHhhcc-cc---ccCCCCceEEEEcC----C
Confidence 1111001 115899999999985211 11111 123333332110 00 00113688888773 4
Q ss_pred CcCCcccCCCCCCchHHHHHHHHHHHhc
Q 021699 219 NENDEKVLPNGTAWIPNLVKTITEVVLN 246 (309)
Q Consensus 219 ~~~~~~~l~~~~~w~~~L~~~i~~~~~~ 246 (309)
+.+ +++|++.+...+..
T Consensus 268 g~G-----------i~~L~~~i~~~~~~ 284 (355)
T 3p32_A 268 GRG-----------LAELWDTVERHRQV 284 (355)
T ss_dssp TBS-----------HHHHHHHHHHHHHH
T ss_pred CCC-----------HHHHHHHHHHHHHH
Confidence 443 78888887776643
No 188
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.26 E-value=7.8e-13 Score=122.78 Aligned_cols=141 Identities=18% Similarity=0.154 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCC------cccccCCCCCCCeeEEEEeeeCCeEEEEEe
Q 021699 20 ATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEK------AVTVSTFQSEGPRPVMVSRSRAGFTLNIVD 93 (309)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~------~~~~~~~~~~t~~~~~~~~~~~g~~l~liD 93 (309)
.....+.++++.+.... ...+|+++|.+|+|||||+|+|++.. ...++..+++|.....+.... .+.++|
T Consensus 142 ~~g~gi~~L~~~l~~~~-~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liD 217 (368)
T 3h2y_A 142 AKGQGIAELADAIEYYR-GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE---ESSLYD 217 (368)
T ss_dssp TTCTTHHHHHHHHHHHH-TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS---SCEEEE
T ss_pred CCCcCHHHHHhhhhhhc-ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC---CeEEEe
Confidence 33344555555554322 23789999999999999999999863 334677888887766544322 389999
Q ss_pred CCCCCCCCCCcHH-HHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021699 94 TPGLIEGGYVNYH-AIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 94 TPG~~~~~~~~~~-~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
|||+.+.....+. ..+.+..+.....++.++|+++.+..-+ ......+..+. + ...|+++++||+|.....
T Consensus 218 tPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~-~g~l~~~d~l~---~--~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 218 TPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLF-FSGLARFDYVS---G--GRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp CCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEE-ETTTEEEEEEE---S--SSEEEEEEECTTSCEEEE
T ss_pred CCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEE-EcceEEEEEec---C--CCceEEEEecCccccccc
Confidence 9999876532221 1233444444578899999965532211 11111111111 1 126899999999986443
No 189
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.25 E-value=4.1e-13 Score=124.70 Aligned_cols=138 Identities=17% Similarity=0.156 Sum_probs=85.8
Q ss_pred HHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC-----CcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 021699 23 TKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE-----KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97 (309)
Q Consensus 23 ~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~-----~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~ 97 (309)
..+.++++.+.... ...+|+++|.+|+|||||+|+|++. ....+++.+++|......... ..+.++||||+
T Consensus 147 ~gi~~L~~~I~~~~-~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~liDtPG~ 222 (369)
T 3ec1_A 147 IGMAKVMEAINRYR-EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE---SGATLYDTPGI 222 (369)
T ss_dssp BTHHHHHHHHHHHH-TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS---TTCEEEECCSC
T ss_pred CCHHHHHHHHHhhc-ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC---CCeEEEeCCCc
Confidence 33444555444321 2468999999999999999999987 455778888988876654432 24899999999
Q ss_pred CCCCCCcHHH-HHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCC
Q 021699 98 IEGGYVNYHA-IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 170 (309)
Q Consensus 98 ~~~~~~~~~~-~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~ 170 (309)
.+.....+.. .+.+..+.....+|+++|+++....-+. .....+..+. +. ..++++++||.|.....
T Consensus 223 ~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~-g~l~~l~~l~---~~--~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 223 INHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFF-GGLARLDYIK---GG--RRSFVCYMANELTVHRT 290 (369)
T ss_dssp CCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEE-TTTEEEEEEE---SS--SEEEEEEECTTSCEEEE
T ss_pred CcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEE-CCEEEEEEcc---CC--CceEEEEecCCcccccc
Confidence 8754322211 1223333445689999999665322111 1111111111 11 25899999999986443
No 190
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.21 E-value=8.5e-12 Score=109.92 Aligned_cols=47 Identities=15% Similarity=0.165 Sum_probs=30.4
Q ss_pred CCcEEEEEEeCCcc---ccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 119 TIDVLLYVDRLDVY---RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 119 ~~d~il~v~~~d~~---~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++|++++|++++.. ++... ..++..+.+.... ...|+++|+||+|+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~-~~~l~~i~~~~~~-~~~piilV~NK~Dl~ 211 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQ-LKFVSNLYNQLAK-TKKPIVVVLTKCDEG 211 (255)
T ss_dssp ECCEEEEEEECBC----CHHHH-HHHHHHHHHHHHH-TTCCEEEEEECGGGB
T ss_pred cCCEEEEEEECCCCchhhHHHH-HHHHHHHHHHhcc-CCCCEEEEEEccccc
Confidence 58999999888642 33222 3455555544211 126999999999984
No 191
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.21 E-value=7e-11 Score=118.08 Aligned_cols=116 Identities=13% Similarity=0.096 Sum_probs=75.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcc-----c------ccC------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAV-----T------VST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~-----~------~~~------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~ 100 (309)
...+|+|+|.+|+|||||+|+|+..... . +.+ ..+.|.........+.+..+.||||||..+.
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 3589999999999999999999832100 0 001 1223333334456677899999999999553
Q ss_pred CCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.......+ ..+|++|+|++... .....+...+..+.+. + .|+++|+||+|+..
T Consensus 91 ---~~~~~~~l------~~aD~~ilVvDa~~-g~~~~t~~~~~~~~~~-~----~p~ivviNKiD~~~ 143 (691)
T 1dar_A 91 ---TIEVERSM------RVLDGAIVVFDSSQ-GVEPQSETVWRQAEKY-K----VPRIAFANKMDKTG 143 (691)
T ss_dssp ---HHHHHHHH------HHCSEEEEEEETTT-CSCHHHHHHHHHHHHT-T----CCEEEEEECTTSTT
T ss_pred ---HHHHHHHH------HHCCEEEEEEECCC-CcchhhHHHHHHHHHc-C----CCEEEEEECCCccc
Confidence 22333333 36899999977654 3555555555555432 2 79999999999863
No 192
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.21 E-value=5.1e-11 Score=109.78 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
....|+++|.+|+|||||+|+|++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 368999999999999999999996
No 193
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.20 E-value=7.8e-11 Score=120.12 Aligned_cols=115 Identities=16% Similarity=0.215 Sum_probs=73.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccC---------------CCCCCCeeEEEEeeeC----------------C
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRA----------------G 86 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~---------------~~~~t~~~~~~~~~~~----------------g 86 (309)
...+|+|+|.+|+|||||+|+|++........ ..+.|.........+. +
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 45799999999999999999999753222111 1112222222222222 5
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021699 87 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 87 ~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
..+.||||||..+.. .+....+ ..+|++|+|+++.. ..+..+...+..+... ..|+++|+||+|+
T Consensus 98 ~~i~liDTPG~~df~---~~~~~~l------~~aD~ailVvDa~~-g~~~qt~~~~~~~~~~-----~~p~ilviNK~D~ 162 (842)
T 1n0u_A 98 FLINLIDSPGHVDFS---SEVTAAL------RVTDGALVVVDTIE-GVCVQTETVLRQALGE-----RIKPVVVINKVDR 162 (842)
T ss_dssp EEEEEECCCCCCSSC---HHHHHHH------HTCSEEEEEEETTT-BSCHHHHHHHHHHHHT-----TCEEEEEEECHHH
T ss_pred ceEEEEECcCchhhH---HHHHHHH------HhCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCeEEEEECCCc
Confidence 689999999996643 2333333 48999999987754 3455555544443322 2689999999998
Q ss_pred C
Q 021699 167 S 167 (309)
Q Consensus 167 ~ 167 (309)
.
T Consensus 163 ~ 163 (842)
T 1n0u_A 163 A 163 (842)
T ss_dssp H
T ss_pred c
Confidence 5
No 194
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.18 E-value=2.6e-11 Score=111.82 Aligned_cols=85 Identities=20% Similarity=0.229 Sum_probs=58.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-----------------eEEEEEeCCCCCCCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGGY 102 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~l~liDTPG~~~~~~ 102 (309)
++|+++|.+|+|||||+|+|++.. +.+++.+++|..+......+.+ ..+.||||||+.+...
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 789999999999999999999987 4677778777776554444444 4799999999975421
Q ss_pred ----CcHHHHHHHHHhhhcCCCcEEEEEEeCCc
Q 021699 103 ----VNYHAIQLIKRFLLNKTIDVLLYVDRLDV 131 (309)
Q Consensus 103 ----~~~~~~~~i~~~~~~~~~d~il~v~~~d~ 131 (309)
...+++..+ +++|++++|++...
T Consensus 82 ~~~gl~~~fl~~i------r~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANI------RETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHH------HTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHH------HhcCeEEEEEecCC
Confidence 112233333 58999999988753
No 195
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.17 E-value=6.2e-10 Score=110.83 Aligned_cols=115 Identities=15% Similarity=0.173 Sum_probs=78.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcc-----cc------cC------CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAV-----TV------ST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~-----~~------~~------~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~ 100 (309)
...+|+|+|.+|+|||||+++|++.... .+ .+ ..+.|...........+..+.||||||..+.
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 3478999999999999999999943211 00 00 1133444555566677889999999998542
Q ss_pred CCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 101 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
.......+ ..+|++++|+++.. .++.....+++.+... + .|+++|+||+|+.
T Consensus 88 ---~~~~~~~l------~~ad~~ilVvD~~~-g~~~qt~~~~~~~~~~-~----ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 ---VGEIRGAL------EAADAALVAVSAEA-GVQVGTERAWTVAERL-G----LPRMVVVTKLDKG 139 (665)
T ss_dssp ---HHHHHHHH------HHCSEEEEEEETTT-CSCHHHHHHHHHHHHT-T----CCEEEEEECGGGC
T ss_pred ---HHHHHHHH------hhcCcEEEEEcCCc-ccchhHHHHHHHHHHc-c----CCEEEEecCCchh
Confidence 22333333 36899999977643 4666666666666543 2 6899999999985
No 196
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.17 E-value=3.3e-10 Score=113.40 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=73.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCccc-----c------cC------CCCCCCeeEEEEeeeCC-------eEEEEEe
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVT-----V------ST------FQSEGPRPVMVSRSRAG-------FTLNIVD 93 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~-----~------~~------~~~~t~~~~~~~~~~~g-------~~l~liD 93 (309)
...+|+|+|..|+|||||+++|+...... + .+ ..+.|.........+.+ ..+.|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 35899999999999999999997532100 0 00 11223333333445555 7899999
Q ss_pred CCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 94 TPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 94 TPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
|||..++. .+....+ ..+|++|+|++... .........++.+... + .|+++|+||+|+..
T Consensus 89 TPG~~df~---~~~~~~l------~~aD~aIlVvDa~~-gv~~qt~~~~~~~~~~-~----ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 89 TPGHVDFT---IEVERSM------RVLDGAVMVYCAVG-GVQPQSETVWRQANKY-K----VPRIAFVNKMDRMG 148 (704)
T ss_pred CCCccchH---HHHHHHH------HHCCEEEEEEeCCC-CCcHHHHHHHHHHHHc-C----CCEEEEEeCCCccc
Confidence 99996532 2222333 47899999977653 3444444555444322 2 68999999999853
No 197
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.12 E-value=5.1e-10 Score=102.70 Aligned_cols=119 Identities=22% Similarity=0.202 Sum_probs=67.8
Q ss_pred HHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhC------CCcccccCCCCCCC--------------------eeEEE
Q 021699 27 ELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG------EKAVTVSTFQSEGP--------------------RPVMV 80 (309)
Q Consensus 27 ~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g------~~~~~~~~~~~~t~--------------------~~~~~ 80 (309)
.++..+.....+...|+++|.+|+|||||+|.|++ .++..++..+.++. .+...
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~ 123 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRP 123 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeec
Confidence 44444444444568999999999999999999973 33333332222211 01000
Q ss_pred E-------------------eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHH
Q 021699 81 S-------------------RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQI 141 (309)
Q Consensus 81 ~-------------------~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~ 141 (309)
. ....+..+.||||||+.+.. .. +. ..+|++++|++.... . +.+.
T Consensus 124 ~~~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~---~~----~~-----~~aD~vl~Vvd~~~~--~--~~~~ 187 (341)
T 2p67_A 124 VPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSE---TE----VA-----RMVDCFISLQIAGGG--D--DLQG 187 (341)
T ss_dssp ECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHH---HH----HH-----TTCSEEEEEECC----------CC
T ss_pred CccccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchH---HH----HH-----HhCCEEEEEEeCCcc--H--HHHH
Confidence 0 01457789999999995421 11 11 689999999665321 1 1111
Q ss_pred HHHHHHHhCccccCcEEEEEecccCC
Q 021699 142 TRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 142 l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
++. ... ..|.++|+||+|+.
T Consensus 188 l~~--~~~----~~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 188 IKK--GLM----EVADLIVINKDDGD 207 (341)
T ss_dssp CCH--HHH----HHCSEEEECCCCTT
T ss_pred HHH--hhh----cccCEEEEECCCCC
Confidence 111 011 15789999999985
No 198
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.07 E-value=1.5e-10 Score=107.75 Aligned_cols=87 Identities=24% Similarity=0.271 Sum_probs=50.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-----------------eEEEEEeCCCCCC
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIE 99 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~l~liDTPG~~~ 99 (309)
...++|+++|.+|+|||||+|+|++... .+++.+++|..+......+.+ ..+.+|||||+..
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 3568999999999999999999999875 677788888777665555443 2599999999976
Q ss_pred CCCCc----HHHHHHHHHhhhcCCCcEEEEEEeCC
Q 021699 100 GGYVN----YHAIQLIKRFLLNKTIDVLLYVDRLD 130 (309)
Q Consensus 100 ~~~~~----~~~~~~i~~~~~~~~~d~il~v~~~d 130 (309)
..... ...+..+ +.+|++++|++..
T Consensus 99 ~as~~~glg~~~l~~i------r~aD~Il~VvD~~ 127 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHI------SACDGIFHLTRAF 127 (396)
T ss_dssp --------CCHHHHHH------HTSSSEEEEEEC-
T ss_pred ccchhhHHHHHHHHHH------HhcCeEEEEEecC
Confidence 43321 1333333 5899999997763
No 199
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.05 E-value=2.6e-09 Score=103.92 Aligned_cols=123 Identities=11% Similarity=0.121 Sum_probs=82.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcc---------------cccC------CCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAV---------------TVST------FQSEGPRPVMVSRSRAGFTLNIVDTPGL 97 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~---------------~~~~------~~~~t~~~~~~~~~~~g~~l~liDTPG~ 97 (309)
-=||+|+|..++|||||.-+|+-.... .+.+ ..+.|.......+.+++..++||||||.
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 358999999999999999999721110 1111 1223334445667889999999999999
Q ss_pred CCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHHHH
Q 021699 98 IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF 177 (309)
Q Consensus 98 ~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~~~ 177 (309)
.|+. .+....+ +-+|.+|+|++... ++..+...+++...+. + .|.++++||+|.. ..++++.
T Consensus 111 vDF~---~Ev~raL------~~~DgAvlVvda~~-GV~~qT~~v~~~a~~~-~----lp~i~fINK~Dr~---~ad~~~~ 172 (548)
T 3vqt_A 111 QDFS---EDTYRVL------TAVDSALVVIDAAK-GVEAQTRKLMDVCRMR-A----TPVMTFVNKMDRE---ALHPLDV 172 (548)
T ss_dssp GGCS---HHHHHHH------HSCSEEEEEEETTT-BSCHHHHHHHHHHHHT-T----CCEEEEEECTTSC---CCCHHHH
T ss_pred HHHH---HHHHHHH------HhcCceEEEeecCC-CcccccHHHHHHHHHh-C----CceEEEEecccch---hcchhHh
Confidence 6653 3444455 37899999976643 5777777777666554 2 7999999999974 3346655
Q ss_pred HH
Q 021699 178 CS 179 (309)
Q Consensus 178 ~~ 179 (309)
++
T Consensus 173 ~~ 174 (548)
T 3vqt_A 173 MA 174 (548)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 200
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.04 E-value=6.1e-10 Score=108.68 Aligned_cols=104 Identities=17% Similarity=0.149 Sum_probs=61.2
Q ss_pred cCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEe-------eeCCeEEEEEeCCCCCCCCC--CcH
Q 021699 35 ENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR-------SRAGFTLNIVDTPGLIEGGY--VNY 105 (309)
Q Consensus 35 ~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~-------~~~g~~l~liDTPG~~~~~~--~~~ 105 (309)
......+|+|+|.+|+|||||+|+|+|..... +.+++|..++.... ...+..+.|+||||+.+... ...
T Consensus 34 i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~ 111 (592)
T 1f5n_A 34 ITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQN 111 (592)
T ss_dssp CCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTT
T ss_pred ccCCCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhH
Confidence 34456899999999999999999999987532 33333322222111 12567899999999987543 111
Q ss_pred HH-HHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHH
Q 021699 106 HA-IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITD 147 (309)
Q Consensus 106 ~~-~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~ 147 (309)
.. +-.+...+ .++ +|++..+ .++..+...+..+.+
T Consensus 112 ~~~~fala~ll----ss~--lv~n~~~-~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 112 DSWIFALAVLL----SST--FVYNSIG-TINQQAMDQLYYVTE 147 (592)
T ss_dssp HHHHHHHHHHH----CSE--EEEEEES-CSSHHHHHTTHHHHT
T ss_pred HHHHHHHHHHh----cCe--EEEECCC-CccHHHHHHHHHHHH
Confidence 11 11122122 123 3333332 577888776666544
No 201
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.04 E-value=4.1e-10 Score=104.97 Aligned_cols=87 Identities=20% Similarity=0.243 Sum_probs=68.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCC-----------------eEEEEEeCCCCCCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEG 100 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~l~liDTPG~~~~ 100 (309)
...+++++|.+|+|||||+|+|+|...+.+++.+++|..+......+.+ ..+.++||||+...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 4689999999999999999999998766788899999888777776665 46899999999764
Q ss_pred CC----CcHHHHHHHHHhhhcCCCcEEEEEEeCC
Q 021699 101 GY----VNYHAIQLIKRFLLNKTIDVLLYVDRLD 130 (309)
Q Consensus 101 ~~----~~~~~~~~i~~~~~~~~~d~il~v~~~d 130 (309)
.. ....++..+ ..+|++++|++..
T Consensus 99 ~s~~e~L~~~fl~~i------r~~d~il~Vvd~~ 126 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHV------RAVDAIYQVVRAF 126 (392)
T ss_dssp CCSSSSSCHHHHHHH------TTCSEEEEEEECC
T ss_pred CcHHHHHHHHHHHHH------HHHHHHHHHHhcc
Confidence 33 233444444 5899999997764
No 202
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.02 E-value=2.1e-09 Score=91.79 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
...+|+++|.+|+|||||+|+|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999865
No 203
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.02 E-value=5.1e-09 Score=95.86 Aligned_cols=35 Identities=23% Similarity=0.446 Sum_probs=27.1
Q ss_pred HHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhC
Q 021699 27 ELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 27 ~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.+++.+.-.-.....++++|++|+|||||+|.|.|
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34555554334567899999999999999999983
No 204
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.00 E-value=5.6e-10 Score=103.32 Aligned_cols=85 Identities=18% Similarity=0.222 Sum_probs=60.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeee---------------------CCeEEEEEeCCCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR---------------------AGFTLNIVDTPGLI 98 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~---------------------~g~~l~liDTPG~~ 98 (309)
++|+++|.+|+|||||+|+|++.. ..+++.+.+|..+......+ .+..+.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 689999999999999999999875 35566666665544433322 24579999999997
Q ss_pred CCCC----CcHHHHHHHHHhhhcCCCcEEEEEEeCCc
Q 021699 99 EGGY----VNYHAIQLIKRFLLNKTIDVLLYVDRLDV 131 (309)
Q Consensus 99 ~~~~----~~~~~~~~i~~~~~~~~~d~il~v~~~d~ 131 (309)
+... ...+++..+ +.+|++++|++...
T Consensus 81 ~~a~~~~~lg~~fl~~i------r~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHI------REVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSCTTHHHHHHH------HTCSEEEEEEECCC
T ss_pred ccccccchHHHHHHHHH------HhCCEEEEEEECCC
Confidence 6532 233444444 48999999988753
No 205
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.98 E-value=3.9e-10 Score=99.76 Aligned_cols=75 Identities=21% Similarity=0.264 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021699 22 QTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 22 ~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
...+.++++.+...- ++++++|.+|+|||||+|+|+|.....+++.+++|........ +..+.||||||+.+..
T Consensus 85 ~~gi~~L~~~l~~~~---~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 85 EPRKVLLKKLSFDRL---ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL---ENGVKILDTPGILYKN 158 (262)
T ss_dssp SCHHHHHHHHCCCTT---CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC---TTSCEEESSCEECCCC
T ss_pred CcCHHHHHHHHHHhh---hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe---CCCEEEEECCCcccCc
Confidence 344555555554422 7999999999999999999999987677778887776543322 3478999999998765
Q ss_pred C
Q 021699 102 Y 102 (309)
Q Consensus 102 ~ 102 (309)
.
T Consensus 159 ~ 159 (262)
T 3cnl_A 159 I 159 (262)
T ss_dssp C
T ss_pred C
Confidence 5
No 206
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.94 E-value=2.8e-08 Score=93.13 Aligned_cols=117 Identities=19% Similarity=0.185 Sum_probs=68.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCCCcccccC----CCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVST----FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKR 113 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~----~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~ 113 (309)
....++++|++|+|||||+|.|+|......+. ...++......... ....++++|+||++.....-++++ ..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L---~~ 143 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYL---EK 143 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHH---HH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHH---HH
Confidence 45689999999999999999999953211111 11122222222211 112689999999964322222333 22
Q ss_pred hhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 114 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 114 ~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+-. ...+.+++ + +..+....+..+...+... + +|+++|+||.|+.
T Consensus 144 ~~L-~~~~~~~~-l--S~G~~~kqrv~la~aL~~~-~----~p~~lV~tkpdll 188 (413)
T 1tq4_A 144 MKF-YEYDFFII-I--SATRFKKNDIDIAKAISMM-K----KEFYFVRTKVDSD 188 (413)
T ss_dssp TTG-GGCSEEEE-E--ESSCCCHHHHHHHHHHHHT-T----CEEEEEECCHHHH
T ss_pred cCC-CccCCeEE-e--CCCCccHHHHHHHHHHHhc-C----CCeEEEEecCccc
Confidence 211 23355554 3 3333556777777777663 2 6999999999863
No 207
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.92 E-value=5e-09 Score=100.61 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=69.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHh------CCCcccccCCCCCC-C------------eeEEEE----------------e
Q 021699 38 NTLTILVMGKGGVGKSSTVNSII------GEKAVTVSTFQSEG-P------------RPVMVS----------------R 82 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~------g~~~~~~~~~~~~t-~------------~~~~~~----------------~ 82 (309)
.+..|+++|.+|+||||++|.|. |.++..++..+... . -+.... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999 77665544311100 0 011100 0
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCc-EEEEE
Q 021699 83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVL 161 (309)
Q Consensus 83 ~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~-~iiV~ 161 (309)
...+..+.||||||.... +......+........+|.+++|++... .. ......+.+.+. .+ .++|+
T Consensus 180 ~~~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~i~pd~vllVvDa~~-g~--~~~~~a~~~~~~------~~i~gvVl 247 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQ---EDSLFEEMLQVANAIQPDNIVYVMDASI-GQ--ACEAQAKAFKDK------VDVASVIV 247 (504)
T ss_dssp HHTTCCEEEEEECCCCTT---CHHHHHHHHHHHHHHCCSEEEEEEETTC-CT--THHHHHHHHHHH------HCCCCEEE
T ss_pred HHCCCcEEEEeCCCCccc---chhHHHHHHHHHhhhcCceEEEEEeccc-cc--cHHHHHHHHHhh------cCceEEEE
Confidence 126778999999999642 2222232322211127899999966543 22 234444444432 36 48999
Q ss_pred ecccCC
Q 021699 162 THAQLS 167 (309)
Q Consensus 162 tk~D~~ 167 (309)
||+|..
T Consensus 248 NK~D~~ 253 (504)
T 2j37_W 248 TKLDGH 253 (504)
T ss_dssp ECTTSC
T ss_pred eCCccc
Confidence 999985
No 208
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.84 E-value=1.2e-08 Score=89.39 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=28.1
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHh-----CCCcccccCC
Q 021699 36 NVNTLTILVMGKGGVGKSSTVNSII-----GEKAVTVSTF 70 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~-----g~~~~~~~~~ 70 (309)
+.....+++.|++|+||||+++.|. |.++..+...
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3456889999999999999999998 7776555533
No 209
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.78 E-value=4.3e-09 Score=104.26 Aligned_cols=112 Identities=15% Similarity=0.195 Sum_probs=78.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCCcc-----cc------cCC------CCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEKAV-----TV------STF------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 103 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~~~-----~~------~~~------~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~ 103 (309)
||+|+|..++|||||..+|+-.... .+ .+. .+.|.......+.+++..++||||||..|+
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF--- 80 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF--- 80 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST---
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH---
Confidence 7899999999999999999722110 11 111 122334444566788999999999999654
Q ss_pred cHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 104 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 104 ~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
..+....+ +-+|.+|+|++... .+..+....++...+. + .|.++++||+|..
T Consensus 81 ~~Ev~raL------~~~DgavlVVDa~~-GV~~qT~~v~~~a~~~-~----lp~i~~INKmDr~ 132 (638)
T 3j25_A 81 LAEVYRSL------SVLDGAILLISAKD-GVQAQTRILFHALRKM-G----IPTIFFINKIDQN 132 (638)
T ss_dssp HHHHHHHH------TTCSEEECCEESSC-TTCSHHHHHHHHHHHH-T----CSCEECCEECCSS
T ss_pred HHHHHHHH------HHhCEEEEEEeCCC-CCcHHHHHHHHHHHHc-C----CCeEEEEeccccc
Confidence 33444444 57899999977643 5667777777766655 2 6889999999974
No 210
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.76 E-value=1.4e-07 Score=94.62 Aligned_cols=121 Identities=12% Similarity=0.133 Sum_probs=76.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcc-----------cccC------CCCCCCeeEEEEeee-------CCeEEEEEeCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAV-----------TVST------FQSEGPRPVMVSRSR-------AGFTLNIVDTP 95 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~-----------~~~~------~~~~t~~~~~~~~~~-------~g~~l~liDTP 95 (309)
=||+|+|..++|||||..+|+-.... ...+ ..+.|......++.+ ++..++|||||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 37999999999999999998732110 0111 112232222333433 35789999999
Q ss_pred CCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCCCCCCHH
Q 021699 96 GLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 175 (309)
Q Consensus 96 G~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~~~~~~~ 175 (309)
|.-|+. .+....++ -+|.+|+|++... ++..+...+++...+.. .|.++++||+|.. ..+++
T Consensus 94 GHvDF~---~Ev~~aLr------~~DgavlvVDave-GV~~qT~~v~~~a~~~~-----lp~i~~iNKiDr~---~a~~~ 155 (709)
T 4fn5_A 94 GHVDFT---IEVERSLR------VLDGAVVVFCGTS-GVEPQSETVWRQANKYG-----VPRIVYVNKMDRQ---GANFL 155 (709)
T ss_dssp SCTTCH---HHHHHHHH------HCSEEEEEEETTT-CSCHHHHHHHHHHHHHT-----CCEEEEEECSSST---TCCHH
T ss_pred CCcccH---HHHHHHHH------HhCeEEEEEECCC-CCchhHHHHHHHHHHcC-----CCeEEEEcccccc---CccHH
Confidence 996653 34444443 5799999976543 57777777777766552 7999999999974 23455
Q ss_pred HHH
Q 021699 176 VFC 178 (309)
Q Consensus 176 ~~~ 178 (309)
..+
T Consensus 156 ~~~ 158 (709)
T 4fn5_A 156 RVV 158 (709)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 211
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.74 E-value=8.7e-08 Score=94.39 Aligned_cols=41 Identities=27% Similarity=0.433 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhhcCCC----ceEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 23 TKLLELLGKLKQENVN----TLTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 23 ~~l~~~~~~~~~~~~~----~l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
..+.++.++++..+.. --.|+|+|++|+|||||+|.|.|-.
T Consensus 25 r~ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 25 RPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp HHHHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCCC
Confidence 3455566666665532 2359999999999999999999974
No 212
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.69 E-value=1.8e-07 Score=88.19 Aligned_cols=119 Identities=20% Similarity=0.155 Sum_probs=70.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHh------CCCcccccCCCCC-------------CCeeEEEE----------------e
Q 021699 38 NTLTILVMGKGGVGKSSTVNSII------GEKAVTVSTFQSE-------------GPRPVMVS----------------R 82 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~------g~~~~~~~~~~~~-------------t~~~~~~~----------------~ 82 (309)
.+..|+++|.+|+||||+++.|. |.++..+...+.. ...+.... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998 5544333211100 00001000 0
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEe
Q 021699 83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 162 (309)
Q Consensus 83 ~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~t 162 (309)
...+..+.||||||... .+......++.......+|.+++|++... ........+.+.+.. ....+|+|
T Consensus 179 ~~~~~DvVIIDTaGrl~---~d~~lm~el~~i~~~~~pd~vlLVvDA~~---gq~a~~~a~~f~~~~-----~i~gVIlT 247 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHK---EDKALIEEMKQISNVIHPHEVILVIDGTI---GQQAYNQALAFKEAT-----PIGSIIVT 247 (443)
T ss_dssp HHTTCSEEEEECCCCSS---CCHHHHHHHHHHHHHHCCSEEEEEEEGGG---GGGHHHHHHHHHHSC-----TTEEEEEE
T ss_pred HhCCCCEEEEECCCccc---chHHHHHHHHHHHHhhcCceEEEEEeCCC---chhHHHHHHHHHhhC-----CCeEEEEE
Confidence 01357899999999843 33444444544433347899999955432 123334444444432 46789999
Q ss_pred cccCC
Q 021699 163 HAQLS 167 (309)
Q Consensus 163 k~D~~ 167 (309)
|+|..
T Consensus 248 KlD~~ 252 (443)
T 3dm5_A 248 KLDGS 252 (443)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 99974
No 213
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.68 E-value=2.1e-08 Score=94.76 Aligned_cols=117 Identities=19% Similarity=0.178 Sum_probs=67.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC------CcccccCCC------------------------CCCCeeEEE----Eeee
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE------KAVTVSTFQ------------------------SEGPRPVMV----SRSR 84 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~------~~~~~~~~~------------------------~~t~~~~~~----~~~~ 84 (309)
+..|+++|.+|+||||+++.|.+. ++..++..+ +++.++... ....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 467999999999999999999863 222221110 012221100 0012
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccC-c-EEEEEe
Q 021699 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWK-R-ALIVLT 162 (309)
Q Consensus 85 ~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~-~-~iiV~t 162 (309)
.+..+.||||||... .+......+........+|.+++|++... .. .....+ +.+... . + ..+|+|
T Consensus 179 ~~~D~vIIDT~G~~~---~~~~l~~~l~~i~~~~~~d~vllVvda~~-g~--~~~~~~----~~~~~~--~~~i~gvVln 246 (432)
T 2v3c_C 179 KKADVLIIDTAGRHK---EEKGLLEEMKQIKEITNPDEIILVIDGTI-GQ--QAGIQA----KAFKEA--VGEIGSIIVT 246 (432)
T ss_dssp SSCSEEEEECCCSCS---SHHHHHHHHHHTTSSSCCSEEEEEEEGGG-GG--GHHHHH----HHHHTT--SCSCEEEEEE
T ss_pred hCCCEEEEcCCCCcc---ccHHHHHHHHHHHHHhcCcceeEEeeccc-cH--HHHHHH----HHHhhc--ccCCeEEEEe
Confidence 566899999999853 34444455544333347899999965432 11 122222 223221 3 4 889999
Q ss_pred cccCC
Q 021699 163 HAQLS 167 (309)
Q Consensus 163 k~D~~ 167 (309)
|+|..
T Consensus 247 K~D~~ 251 (432)
T 2v3c_C 247 KLDGS 251 (432)
T ss_dssp CSSSC
T ss_pred CCCCc
Confidence 99974
No 214
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.48 E-value=6.9e-07 Score=76.17 Aligned_cols=25 Identities=24% Similarity=0.419 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
...+|+++|.+|+|||||+|+++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999965
No 215
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.38 E-value=1.5e-06 Score=81.83 Aligned_cols=120 Identities=17% Similarity=0.143 Sum_probs=67.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHh------CCCcccccCCCC-------------CCCeeEEEE----------------ee
Q 021699 39 TLTILVMGKGGVGKSSTVNSII------GEKAVTVSTFQS-------------EGPRPVMVS----------------RS 83 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~------g~~~~~~~~~~~-------------~t~~~~~~~----------------~~ 83 (309)
+-.|+++|.+|+||||+++.|. |.++..++.... ....+.... ..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 5789999999999999999998 444322221000 000000000 01
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEec
Q 021699 84 RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 163 (309)
Q Consensus 84 ~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk 163 (309)
..+..+.||||||..... .+......+........+|.+++|++.. . ........+.+.+.. ....+|+||
T Consensus 177 ~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~~pd~vlLVlDa~--~-gq~a~~~a~~f~~~~-----~~~gVIlTK 247 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVLKPDDVILVIDAS--I-GQKAYDLASRFHQAS-----PIGSVIITK 247 (433)
T ss_dssp TTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHHCCSEEEEEEEGG--G-GGGGHHHHHHHHHHC-----SSEEEEEEC
T ss_pred hcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhhCCcceEEEEeCc--c-chHHHHHHHHHhccc-----CCcEEEEec
Confidence 136689999999974310 2223334444333223678888885443 2 122334455555443 468899999
Q ss_pred ccCC
Q 021699 164 AQLS 167 (309)
Q Consensus 164 ~D~~ 167 (309)
+|..
T Consensus 248 lD~~ 251 (433)
T 3kl4_A 248 MDGT 251 (433)
T ss_dssp GGGC
T ss_pred cccc
Confidence 9974
No 216
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.38 E-value=9.9e-07 Score=83.34 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=56.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC-----------------CcccccCCCCCCCeeEEEEeee---------C--CeEE
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE-----------------KAVTVSTFQSEGPRPVMVSRSR---------A--GFTL 89 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~-----------------~~~~~~~~~~~t~~~~~~~~~~---------~--g~~l 89 (309)
.-.-|.|+|++++|||||+|.|+|. ..+.++ +++..++.....+ . ...+
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~---~t~~~~T~GIw~~~~p~~~~~~~~~~~~v 142 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR---GGSERETTGIQIWSEIFLINKPDGKKVAV 142 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSC---CSSCCCCCEEEEESSCEEEECSSSCEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCC---CCCCCceeEEEEecCccccccCCCCcceE
Confidence 4467899999999999999999964 122222 2333333322222 1 2469
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHH
Q 021699 90 NIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITD 147 (309)
Q Consensus 90 ~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~ 147 (309)
.++||||+.+... +.+.-..|-. +..-=.+++||- +.+ .++..+.+.++.+.+
T Consensus 143 vllDTeG~~~~~~-~~~~d~~ifa-l~~lLSs~~IyN--~~~-~i~~~~l~~L~~~~e 195 (447)
T 3q5d_A 143 LLMDTQGTFDSQS-TLRDSATVFA-LSTMISSIQVYN--LSQ-NVQEDDLQHLQLFTE 195 (447)
T ss_dssp EEEEEECCCSSHH-HHHHHHHHHH-HHHHHCSEEEEE--ESS-SCCHHHHHHHHHHHH
T ss_pred EEEcCCccccccc-chhhhHHHHH-HHHHHhhHHHHh--hcc-cccHHHHHHHHHHHH
Confidence 9999999976543 1111111111 000012444444 332 567777776665544
No 217
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.35 E-value=1.6e-06 Score=78.74 Aligned_cols=80 Identities=9% Similarity=0.026 Sum_probs=47.6
Q ss_pred EEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCc-------cccChhHHHHHHHHHHHhCc
Q 021699 79 MVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDV-------YRVDNLDKQITRAITDNFGE 151 (309)
Q Consensus 79 ~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~-------~~~~~~d~~~l~~l~~~~g~ 151 (309)
...+..++..+.+|||+|........ .. .-.+++++|+|++++. ..-...-.+.+.++......
T Consensus 159 ~~~~~~~~v~l~iwDtgGQe~~R~~w-------~~--yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~ 229 (327)
T 3ohm_A 159 EYPFDLQSVIFRMVDVGGQRSERRKW-------IH--CFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY 229 (327)
T ss_dssp EEEEEETTEEEEEEEECCSHHHHTTG-------GG--GCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS
T ss_pred EEEEEeeceeeEEEEcCCchhHHHHH-------HH--HhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh
Confidence 44556788899999999983211111 11 2268999999987641 11112222344444444432
Q ss_pred c--ccCcEEEEEecccCC
Q 021699 152 Q--IWKRALIVLTHAQLS 167 (309)
Q Consensus 152 ~--~~~~~iiV~tk~D~~ 167 (309)
. ...|+++++||+|+.
T Consensus 230 ~~~~~~~iiL~~NK~DL~ 247 (327)
T 3ohm_A 230 PWFQNSSVILFLNKKDLL 247 (327)
T ss_dssp GGGTTCEEEEEEECHHHH
T ss_pred hccCCceEEEEEECchhh
Confidence 1 226899999999984
No 218
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.29 E-value=8e-06 Score=74.46 Aligned_cols=80 Identities=15% Similarity=0.156 Sum_probs=46.4
Q ss_pred EEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCcc-------ccChhHHHHHHHHHHHhCc
Q 021699 79 MVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY-------RVDNLDKQITRAITDNFGE 151 (309)
Q Consensus 79 ~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-------~~~~~d~~~l~~l~~~~g~ 151 (309)
...+..++..+.+|||+|.. .....-..|. .+++++|||++++.. .-...-.+.+.++......
T Consensus 153 ~~~~~~~~v~l~iwDtaGQe-------~~R~~w~~yy--~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~ 223 (340)
T 4fid_A 153 EYDFVVKDIPFHLIDVGGQR-------SERKXWVSFF--SDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTN 223 (340)
T ss_dssp EEEEESSSCEEEEEECCSCH-------HHHHHHHTTS--CSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHC
T ss_pred EEEEEeeeeeeccccCCCcc-------cccccHHHHh--ccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhh
Confidence 34556678899999999982 1111112222 799999999887521 0011112233333333221
Q ss_pred --cccCcEEEEEecccCC
Q 021699 152 --QIWKRALIVLTHAQLS 167 (309)
Q Consensus 152 --~~~~~~iiV~tk~D~~ 167 (309)
....|+++++||+|+.
T Consensus 224 ~~~~~~piiLv~NK~DL~ 241 (340)
T 4fid_A 224 EFLKGAVKLIFLNKMDLF 241 (340)
T ss_dssp GGGTTSEEEEEEECHHHH
T ss_pred hccCCCeEEEEEECchhh
Confidence 1226899999999974
No 219
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.21 E-value=4.1e-06 Score=79.04 Aligned_cols=119 Identities=19% Similarity=0.208 Sum_probs=66.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHh-------CCCcccccCCCCCCC-----------------------eeEEE------E
Q 021699 38 NTLTILVMGKGGVGKSSTVNSII-------GEKAVTVSTFQSEGP-----------------------RPVMV------S 81 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~-------g~~~~~~~~~~~~t~-----------------------~~~~~------~ 81 (309)
.+-.|+++|.+|+||||++..|. |.++..+...+.... ++... .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 35689999999999999999888 665543332211100 00000 0
Q ss_pred eeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEE
Q 021699 82 RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 161 (309)
Q Consensus 82 ~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~ 161 (309)
....+..+.||||||.... ++.....+........+|.+++|++... . ......++.+.... ...-+|+
T Consensus 179 ~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~~~~p~~vllVvda~~-g--~~~~~~~~~f~~~l-----~i~gvVl 247 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHASINPVETLFVVDAMT-G--QDAANTAKAFNEAL-----PLTGVVL 247 (433)
T ss_dssp HHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHHHSCCSEEEEEEETTB-C--TTHHHHHHHHHHHS-----CCCCEEE
T ss_pred HHhCCCCEEEEECCCcccc---cHHHHHHHHHHHHhhcCcceeEEeecch-h--HHHHHHHHHHhccC-----CCeEEEE
Confidence 0114668999999997432 2333333333222247889999866542 1 12223333333221 2245799
Q ss_pred ecccCC
Q 021699 162 THAQLS 167 (309)
Q Consensus 162 tk~D~~ 167 (309)
||+|..
T Consensus 248 nK~D~~ 253 (433)
T 2xxa_A 248 TKVDGD 253 (433)
T ss_dssp ECTTSS
T ss_pred ecCCCC
Confidence 999974
No 220
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.10 E-value=1.3e-05 Score=71.74 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=64.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHh------CCCcccccCCCCC-----------------------CCeeEEE------Eee
Q 021699 39 TLTILVMGKGGVGKSSTVNSII------GEKAVTVSTFQSE-----------------------GPRPVMV------SRS 83 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~------g~~~~~~~~~~~~-----------------------t~~~~~~------~~~ 83 (309)
+-.|+++|.+|+||||+++.|. |.++..++..... ...+... ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4578899999999999999888 4433222211100 0000000 001
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEec
Q 021699 84 RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 163 (309)
Q Consensus 84 ~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk 163 (309)
..+..+.||||||..... .++.....++.......+|.+++|++... .......++.+.+.. ....+|+||
T Consensus 178 ~~~~D~ViIDTpg~~~~~-~~~~l~~el~~i~~~~~~d~vllVvda~~---g~~~~~~~~~~~~~~-----~i~gvVlnk 248 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEAIKPDEVTLVIDASI---GQKAYDLASKFNQAS-----KIGTIIITK 248 (297)
T ss_dssp HTTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHHHCCSEEEEEEEGGG---GGGHHHHHHHHHHTC-----TTEEEEEEC
T ss_pred hCCCCEEEEeCCCCcccc-cHHHHHHHHHHHHHHhcCCEEEEEeeCCc---hHHHHHHHHHHHhhC-----CCCEEEEeC
Confidence 156689999999985411 22233333332212236889999965532 122333333333311 337889999
Q ss_pred ccCC
Q 021699 164 AQLS 167 (309)
Q Consensus 164 ~D~~ 167 (309)
+|..
T Consensus 249 ~D~~ 252 (297)
T 1j8m_F 249 MDGT 252 (297)
T ss_dssp GGGC
T ss_pred CCCC
Confidence 9974
No 221
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.04 E-value=4.8e-05 Score=69.10 Aligned_cols=119 Identities=20% Similarity=0.273 Sum_probs=64.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC------CcccccC-CCCCCC----------eeEEEEe------------------
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE------KAVTVST-FQSEGP----------RPVMVSR------------------ 82 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~------~~~~~~~-~~~~t~----------~~~~~~~------------------ 82 (309)
.+--++++|++|+||||+++.|.|. ++...+. ...... ....+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 4578999999999999999999863 1111110 000000 0000000
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEe
Q 021699 83 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 162 (309)
Q Consensus 83 ~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~t 162 (309)
...+..+.++||+|........-..+..+.+.+ .+|-.+++.+... ...-.+.++.+.+.. ...++++|
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral---~~de~llvLDa~t---~~~~~~~~~~~~~~~-----~it~iilT 276 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVT---KPNLVIFVGDALA---GNAIVEQARQFNEAV-----KIDGIILT 276 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHH---CCSEEEEEEEGGG---TTHHHHHHHHHHHHS-----CCCEEEEE
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHHHh---cCCCCEEEEecHH---HHHHHHHHHHHHHhc-----CCCEEEEe
Confidence 012445788999998543332222233333333 4788888844322 122334444454443 35789999
Q ss_pred cccCC
Q 021699 163 HAQLS 167 (309)
Q Consensus 163 k~D~~ 167 (309)
|.|..
T Consensus 277 KlD~~ 281 (328)
T 3e70_C 277 KLDAD 281 (328)
T ss_dssp CGGGC
T ss_pred CcCCc
Confidence 99963
No 222
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.93 E-value=3.4e-06 Score=75.93 Aligned_cols=58 Identities=26% Similarity=0.334 Sum_probs=33.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCC-------CCCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQ-------SEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~-------~~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
-.++++|++|+|||||+|+|.|.....++... ++|...... ... ...++||||+...+
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~--~~~--~g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELI--HTS--GGLVADTPGFSSLE 238 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEE--EET--TEEEESSCSCSSCC
T ss_pred CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHh--hcC--CEEEecCCCccccc
Confidence 47899999999999999999997543444332 233322211 121 24789999997643
No 223
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.91 E-value=7.9e-05 Score=71.00 Aligned_cols=118 Identities=17% Similarity=0.266 Sum_probs=63.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC------Cccccc-CCCCC-------C---C--eeEEEEe----------------e
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE------KAVTVS-TFQSE-------G---P--RPVMVSR----------------S 83 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~------~~~~~~-~~~~~-------t---~--~~~~~~~----------------~ 83 (309)
.--|+|+|.+|+|||||++.|.|. .+...+ +.... . + -...... .
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAK 372 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHH
Confidence 457899999999999999999863 221111 10000 0 0 0000000 0
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHh---hh---cCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcE
Q 021699 84 RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF---LL---NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRA 157 (309)
Q Consensus 84 ~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~---~~---~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~ 157 (309)
..+..+.|+||+|.... .......+++. .. ...+|-+++|.+... .......++.+.+..+ ..
T Consensus 373 ~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDatt---Gq~al~~ak~f~~~~~-----it 441 (503)
T 2yhs_A 373 ARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST---GQNAVSQAKLFHEAVG-----LT 441 (503)
T ss_dssp HTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGG---THHHHHHHHHHHHHTC-----CS
T ss_pred hcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcc---cHHHHHHHHHHHhhcC-----CC
Confidence 13557899999998532 22233333222 11 234778888844321 2233344555555443 46
Q ss_pred EEEEecccCC
Q 021699 158 LIVLTHAQLS 167 (309)
Q Consensus 158 iiV~tk~D~~ 167 (309)
.+|+||.|..
T Consensus 442 gvIlTKLD~t 451 (503)
T 2yhs_A 442 GITLTKLDGT 451 (503)
T ss_dssp EEEEECGGGC
T ss_pred EEEEEcCCCc
Confidence 7899999964
No 224
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.88 E-value=7.5e-05 Score=67.06 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=63.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC------CcccccCC-CCCC------------CeeEEEEe----------------e
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE------KAVTVSTF-QSEG------------PRPVMVSR----------------S 83 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~------~~~~~~~~-~~~t------------~~~~~~~~----------------~ 83 (309)
+-.|+++|++|+||||+++.|.|. .+...+.. .... .-+..... .
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~ 181 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMK 181 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999853 11111100 0000 00010000 0
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHH---HHhh---hcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcE
Q 021699 84 RAGFTLNIVDTPGLIEGGYVNYHAIQLI---KRFL---LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRA 157 (309)
Q Consensus 84 ~~g~~l~liDTPG~~~~~~~~~~~~~~i---~~~~---~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~ 157 (309)
..+..+.++||+|.... .......+ +..+ ....++.++++.+... .......++.+.+..| ..
T Consensus 182 ~~~~d~~llDt~G~~~~---~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t---~~~~~~~~~~~~~~~~-----~t 250 (304)
T 1rj9_A 182 ARGYDLLFVDTAGRLHT---KHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT---GQNGLEQAKKFHEAVG-----LT 250 (304)
T ss_dssp HHTCSEEEECCCCCCTT---CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTB---CTHHHHHHHHHHHHHC-----CS
T ss_pred hCCCCEEEecCCCCCCc---hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHH---HHHHHHHHHHHHHHcC-----Cc
Confidence 12445789999998542 22222222 2222 1256888888844322 2333445555554443 57
Q ss_pred EEEEecccCC
Q 021699 158 LIVLTHAQLS 167 (309)
Q Consensus 158 iiV~tk~D~~ 167 (309)
++++||.|..
T Consensus 251 ~iivTh~d~~ 260 (304)
T 1rj9_A 251 GVIVTKLDGT 260 (304)
T ss_dssp EEEEECTTSS
T ss_pred EEEEECCccc
Confidence 8999999864
No 225
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.82 E-value=6.1e-05 Score=67.38 Aligned_cols=118 Identities=17% Similarity=0.155 Sum_probs=62.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC-------CcccccCCC-CCCC------------eeEEEEe----------eeCCeE
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE-------KAVTVSTFQ-SEGP------------RPVMVSR----------SRAGFT 88 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~-------~~~~~~~~~-~~t~------------~~~~~~~----------~~~g~~ 88 (309)
+-.|+++|.+|+||||+++.|.+. ++..+.... ..+. -+..... ...+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 457999999999999999888642 221111110 0000 0000000 124557
Q ss_pred EEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCC
Q 021699 89 LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 167 (309)
Q Consensus 89 l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~ 167 (309)
+.|+||||... .+...+..+.+.+....+|.+++|++... .. ..+..+.+.+.. ....-+|+||.|..
T Consensus 185 lvIiDT~G~~~---~~~~~~~el~~~l~~~~~~~~~lVl~at~---~~---~~~~~~~~~~~~--l~~~giVltk~D~~ 252 (296)
T 2px0_A 185 HVFVDTAGRNF---KDPQYIDELKETIPFESSIQSFLVLSATA---KY---EDMKHIVKRFSS--VPVNQYIFTKIDET 252 (296)
T ss_dssp EEEEECCCCCT---TSHHHHHHHHHHSCCCTTEEEEEEEETTB---CH---HHHHHHTTTTSS--SCCCEEEEECTTTC
T ss_pred EEEEeCCCCCh---hhHHHHHHHHHHHhhcCCCeEEEEEECCC---CH---HHHHHHHHHHhc--CCCCEEEEeCCCcc
Confidence 99999999842 33333344444433234677788854331 11 223333344431 13456778999974
No 226
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.81 E-value=4.3e-05 Score=68.57 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=35.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCC-------CCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~l~liDTPG~~~~ 100 (309)
-.++++|++|+|||||+|+|. .....++.... +|...... ...+ --.++||||+...
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~--~~~~-~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLI--PFGK-GSFVGDTPGFSKV 229 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEE--EETT-TEEEESSCCCSSC
T ss_pred cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEE--EcCC-CcEEEECcCcCcC
Confidence 468999999999999999999 64433333322 23322211 1211 2468999999643
No 227
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.66 E-value=2.4e-05 Score=71.79 Aligned_cols=58 Identities=22% Similarity=0.379 Sum_probs=35.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCc-ccccCCCC-------CCCeeEEEEeeeCCeEEEEEeCCCCCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKA-VTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIEG 100 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~-~~~~~~~~-------~t~~~~~~~~~~~g~~l~liDTPG~~~~ 100 (309)
-.++++|++|+|||||+|.|+|... ..++.... +|......... . ...++||||+.+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~-q--~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFP-H--GGDVIDSPGVREF 281 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECT-T--SCEEEECHHHHTC
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEEC-C--CCEecCcccHHHh
Confidence 3689999999999999999999764 34333221 12222222211 1 2357999998654
No 228
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.64 E-value=9.4e-05 Score=66.48 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=19.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+-.|+++|.+|+||||++..|.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34689999999999999988874
No 229
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.63 E-value=5.9e-05 Score=67.58 Aligned_cols=59 Identities=27% Similarity=0.255 Sum_probs=35.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCcccccCCCC-------CCCeeEEEEeeeCCeEEEEEeCCCCCCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIEGG 101 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~-------~t~~~~~~~~~~~g~~l~liDTPG~~~~~ 101 (309)
-.++++|++|+|||||+|.|.|......+.... +|....... ... .-.++||||+....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~--~~~-~g~v~q~p~~~~~~ 235 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLK--FDF-GGYVVDTPGFANLE 235 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEE--CTT-SCEEESSCSSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEE--cCC-CCEEEECcCCCccC
Confidence 368999999999999999999976433333221 222221111 111 23689999986544
No 230
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.63 E-value=0.00055 Score=64.43 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=54.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHh-------C----------CCcccccCC-CCCCCeeEEEE----eee-CC--eEEEEEeC
Q 021699 40 LTILVMGKGGVGKSSTVNSII-------G----------EKAVTVSTF-QSEGPRPVMVS----RSR-AG--FTLNIVDT 94 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~-------g----------~~~~~~~~~-~~~t~~~~~~~----~~~-~g--~~l~liDT 94 (309)
.-|.|+|..++|||+|+|.|+ | ...+.+++. .++|.-..... ... .| ..+.++||
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT 147 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence 456699999999999999775 2 133444332 23343322211 111 33 46999999
Q ss_pred CCCCCCCCCcHH--HHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHH
Q 021699 95 PGLIEGGYVNYH--AIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITD 147 (309)
Q Consensus 95 PG~~~~~~~~~~--~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~ 147 (309)
.|+++.....+. .+=.+.-.+ ..++||= ..+ .+++.+.+-|..+.+
T Consensus 148 EG~~d~~~~~~~d~~ifaLa~LL----SS~~IyN--~~~-~i~~~~L~~L~~~te 195 (457)
T 4ido_A 148 QGTFDSQSTLRDSATVFALSTMI----SSIQVYN--LSQ-NVQEDDLQHLQLFTE 195 (457)
T ss_dssp CCBTCTTCCHHHHHHHHHHHHHH----CSEEEEE--EES-SCCHHHHHHHHHHHH
T ss_pred cCCCCcccCccccHHHHHHHHHH----hhheeec--ccc-cCCHHHHHHHHHHHH
Confidence 999887654221 111111112 2444444 332 466666666655443
No 231
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.61 E-value=0.00015 Score=66.47 Aligned_cols=80 Identities=9% Similarity=0.054 Sum_probs=48.4
Q ss_pred EEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCcccc-------ChhHHHHHHHHHHHhCc
Q 021699 79 MVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV-------DNLDKQITRAITDNFGE 151 (309)
Q Consensus 79 ~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~-------~~~d~~~l~~l~~~~g~ 151 (309)
...+.+++..+.+|||+|......... . +-.++|++|||++++...- ...-.+...++......
T Consensus 185 ~~~~~~~~~~l~iwDt~GQe~~r~~w~-------~--yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~ 255 (353)
T 1cip_A 185 ETHFTFKDLHFKMFDVGGQRSERKKWI-------H--CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN 255 (353)
T ss_dssp EEEEEETTEEEEEEEECCSGGGGGGGG-------G--GCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred EEEEeeCCeeEEEEeCCCchhhhHHHH-------H--HHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC
Confidence 344566788999999999843322211 1 2268999999988764210 11122333444443331
Q ss_pred --cccCcEEEEEecccCC
Q 021699 152 --QIWKRALIVLTHAQLS 167 (309)
Q Consensus 152 --~~~~~~iiV~tk~D~~ 167 (309)
....|+|+|+||+|+.
T Consensus 256 ~~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 256 KWFTDTSIILFLNKKDLF 273 (353)
T ss_dssp GGGTTSEEEEEEECHHHH
T ss_pred ccccCCcEEEEEECcCch
Confidence 1226899999999984
No 232
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.60 E-value=0.0008 Score=60.77 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=19.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+-.|+++|.+|+||||++..|.+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999988874
No 233
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.43 E-value=0.00015 Score=68.03 Aligned_cols=72 Identities=19% Similarity=0.104 Sum_probs=39.5
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecc
Q 021699 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 85 ~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~ 164 (309)
.+..+.||||||.... +......+......-.+|.+++|++.. .- ..-...++.+.+.. ...-+|+||.
T Consensus 179 ~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~~pd~vlLVvDa~--tg-q~av~~a~~f~~~l-----~i~GVIlTKl 247 (425)
T 2ffh_A 179 EARDLILVDTAGRLQI---DEPLMGELARLKEVLGPDEVLLVLDAM--TG-QEALSVARAFDEKV-----GVTGLVLTKL 247 (425)
T ss_dssp TTCSEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGG--GT-THHHHHHHHHHHHT-----CCCEEEEESG
T ss_pred CCCCEEEEcCCCcccc---cHHHHHHHHHhhhccCCceEEEEEecc--ch-HHHHHHHHHHHhcC-----CceEEEEeCc
Confidence 4567999999997533 333333332222112688888885543 21 22223333333322 3467899999
Q ss_pred cCC
Q 021699 165 QLS 167 (309)
Q Consensus 165 D~~ 167 (309)
|..
T Consensus 248 D~~ 250 (425)
T 2ffh_A 248 DGD 250 (425)
T ss_dssp GGC
T ss_pred CCc
Confidence 863
No 234
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.38 E-value=0.0019 Score=59.19 Aligned_cols=24 Identities=21% Similarity=0.509 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+-.|+++|.+|+||||+++.|.|.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhh
Confidence 346899999999999999999863
No 235
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.37 E-value=0.00095 Score=59.75 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
--++++|.+|+||||+++.|.|.
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999863
No 236
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.36 E-value=1.2e-05 Score=67.76 Aligned_cols=56 Identities=20% Similarity=0.350 Sum_probs=36.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCCc-ccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEKA-VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 97 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~~-~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~ 97 (309)
--|+|+|++|+|||||+|.|++... ......+.+|+.+.. .+.+|..+.++|.+.+
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~--gE~~G~~y~fvs~~~f 76 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRK--SEEDGKEYHFISTEEM 76 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCT--TCCTTSSCEECCHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcC--CeeccccceeccHHHh
Confidence 4688999999999999999997542 122334445554432 2356666666666554
No 237
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.19 E-value=0.0033 Score=55.93 Aligned_cols=72 Identities=19% Similarity=0.120 Sum_probs=38.7
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecc
Q 021699 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 85 ~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~ 164 (309)
.+..+.|+||||.... +......+......-.+|.+++|++.. . .....+.++.+.+.. ...-+|+||.
T Consensus 179 ~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~~~~~~~lv~~~~--~-~~~~~~~~~~~~~~~-----~i~givlnk~ 247 (295)
T 1ls1_A 179 EARDLILVDTAGRLQI---DEPLMGELARLKEVLGPDEVLLVLDAM--T-GQEALSVARAFDEKV-----GVTGLVLTKL 247 (295)
T ss_dssp HTCCEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGG--G-THHHHHHHHHHHHHT-----CCCEEEEECG
T ss_pred CCCCEEEEeCCCCccc---cHHHHHHHHHHhhhcCCCEEEEEEeCC--C-cHHHHHHHHHHhhcC-----CCCEEEEECC
Confidence 4567999999987432 333333333322222578888885543 2 122222233332221 3456899999
Q ss_pred cCC
Q 021699 165 QLS 167 (309)
Q Consensus 165 D~~ 167 (309)
|..
T Consensus 248 d~~ 250 (295)
T 1ls1_A 248 DGD 250 (295)
T ss_dssp GGC
T ss_pred CCC
Confidence 964
No 238
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.18 E-value=0.00042 Score=64.51 Aligned_cols=79 Identities=10% Similarity=0.109 Sum_probs=47.4
Q ss_pred EEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc-c------ChhHHHHHHHHHHHhCc-
Q 021699 80 VSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-V------DNLDKQITRAITDNFGE- 151 (309)
Q Consensus 80 ~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~-~------~~~d~~~l~~l~~~~g~- 151 (309)
..+.+++..+.||||+|......... .+ -.+++++|||++++... . ...-..+..++......
T Consensus 210 ~~~~~~~v~l~iwDtaGQe~~r~~w~-------~y--f~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~ 280 (402)
T 1azs_C 210 TKFQVDKVNFHMFDVGGQRDERRKWI-------QC--FNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 280 (402)
T ss_dssp EEEEETTEEEEEEEECCSGGGGGGGG-------GG--TTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT
T ss_pred EEeecCCccceecccchhhhhhhhhH-------hh--ccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc
Confidence 34566788999999999954322221 12 26899999999886410 0 11112233333333321
Q ss_pred -cccCcEEEEEecccCC
Q 021699 152 -QIWKRALIVLTHAQLS 167 (309)
Q Consensus 152 -~~~~~~iiV~tk~D~~ 167 (309)
....|+++|+||+|+.
T Consensus 281 ~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 281 WLRTISVILFLNKQDLL 297 (402)
T ss_dssp TCSSCCEEEEEECHHHH
T ss_pred cCCCCeEEEEEEChhhh
Confidence 1236899999999973
No 239
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.18 E-value=0.0003 Score=64.66 Aligned_cols=79 Identities=10% Similarity=0.083 Sum_probs=44.4
Q ss_pred EEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccc-c------ChhHHHHHHHHHHHhCc-
Q 021699 80 VSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-V------DNLDKQITRAITDNFGE- 151 (309)
Q Consensus 80 ~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~-~------~~~d~~~l~~l~~~~g~- 151 (309)
..+.+++..+.+|||+|......... .+ -.+++++|||++++... . ...-.+.+..+......
T Consensus 194 ~~~~~~~~~l~i~Dt~Gq~~~r~~w~-------~~--f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~ 264 (362)
T 1zcb_A 194 YDFEIKNVPFKMVDVGGQRSERKRWF-------EC--FDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 264 (362)
T ss_dssp EEEEETTEEEEEEEECC-------CT-------TS--CTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred EEeeeCCeEEEEEeccchhhhhhhHH-------HH--hCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch
Confidence 44566788999999999943322211 11 26899999998886410 0 11112233333333321
Q ss_pred -cccCcEEEEEecccCC
Q 021699 152 -QIWKRALIVLTHAQLS 167 (309)
Q Consensus 152 -~~~~~~iiV~tk~D~~ 167 (309)
....|+|+|+||+|+.
T Consensus 265 ~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 265 VFSNVSIILFLNKTDLL 281 (362)
T ss_dssp GGTTSEEEEEEECHHHH
T ss_pred hhCCCCEEEEEEChhhh
Confidence 1226899999999984
No 240
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.00 E-value=0.00022 Score=58.65 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-.++|+|++|+|||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999975
No 241
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.95 E-value=0.0015 Score=54.28 Aligned_cols=68 Identities=12% Similarity=0.075 Sum_probs=40.1
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEeccc
Q 021699 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 165 (309)
Q Consensus 86 g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D 165 (309)
...+.|+|||+.. .......+ ..+|.+++++..+. .+..-..+++.+.+........++.+|+|++|
T Consensus 75 ~yD~viiD~~~~~-----~~~~~~~l------~~ad~viiv~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~ 141 (206)
T 4dzz_A 75 DYDFAIVDGAGSL-----SVITSAAV------MVSDLVIIPVTPSP--LDFSAAGSVVTVLEAQAYSRKVEARFLITRKI 141 (206)
T ss_dssp TSSEEEEECCSSS-----SHHHHHHH------HHCSEEEEEECSCT--TTHHHHHHHHHHHTTSCGGGCCEEEEEECSBC
T ss_pred CCCEEEEECCCCC-----CHHHHHHH------HHCCEEEEEecCCH--HHHHHHHHHHHHHHHHHhCCCCcEEEEEeccC
Confidence 4579999999873 22222333 25788999966553 22333445555544321122245689999998
Q ss_pred C
Q 021699 166 L 166 (309)
Q Consensus 166 ~ 166 (309)
.
T Consensus 142 ~ 142 (206)
T 4dzz_A 142 E 142 (206)
T ss_dssp T
T ss_pred C
Confidence 4
No 242
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.94 E-value=0.00052 Score=57.66 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=27.0
Q ss_pred HHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 28 LLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 28 ~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+.+++.+.......|+|+|++|+|||||++.|.|.
T Consensus 11 ~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 11 VLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34444443345688999999999999999999875
No 243
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.93 E-value=0.0014 Score=60.03 Aligned_cols=73 Identities=11% Similarity=0.105 Sum_probs=42.0
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCcc-------ccChhHHHHHHHHHHHhCc--cccCc
Q 021699 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY-------RVDNLDKQITRAITDNFGE--QIWKR 156 (309)
Q Consensus 86 g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-------~~~~~d~~~l~~l~~~~g~--~~~~~ 156 (309)
...+.+|||+|.......... .-+++|++|+|++++.. .-...-.++..++...... ....|
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~---------y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p 252 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIH---------LFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 252 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGG---------GCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE
T ss_pred ceeeEEEECCCchhhhHHHHH---------HhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe
Confidence 468999999999543322211 12689999999887510 0011112233333333321 12368
Q ss_pred EEEEEecccCC
Q 021699 157 ALIVLTHAQLS 167 (309)
Q Consensus 157 ~iiV~tk~D~~ 167 (309)
+++|+||+|+.
T Consensus 253 iiLvgNK~DL~ 263 (354)
T 2xtz_A 253 FMLFLNKFDIF 263 (354)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEEECcchh
Confidence 99999999984
No 244
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.82 E-value=0.00051 Score=56.57 Aligned_cols=24 Identities=33% Similarity=0.678 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
++++++|++|+|||||++.|.|.-
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999763
No 245
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.69 E-value=0.00023 Score=59.17 Aligned_cols=21 Identities=33% Similarity=0.688 Sum_probs=19.5
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021699 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
|+|+|++|+|||||++.|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999865
No 246
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.68 E-value=0.00067 Score=56.68 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-.++|+|++|+|||||++.|.|.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999874
No 247
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.54 E-value=0.00095 Score=55.98 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.7
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-++|+|++|+|||||++.|.|-.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999999853
No 248
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.47 E-value=0.011 Score=46.85 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.-.++++|++|+|||||++++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999975
No 249
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.45 E-value=0.03 Score=50.88 Aligned_cols=22 Identities=23% Similarity=0.441 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.++|.|++|+||||+++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999864
No 250
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.44 E-value=0.0015 Score=56.25 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57999999999999999999864
No 251
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.43 E-value=0.0012 Score=55.97 Aligned_cols=24 Identities=25% Similarity=0.612 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-.++|+|++|+|||||++.|.|..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999999843
No 252
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.42 E-value=0.0012 Score=56.19 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
--++|+|++|+|||||++.|.|..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 468899999999999999999864
No 253
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.42 E-value=0.0012 Score=54.32 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=20.0
Q ss_pred EEEEeCCCCCHHHHHHHHhCCC
Q 021699 42 ILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~ 63 (309)
++|+|++|+|||||++.|.+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7899999999999999999753
No 254
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.40 E-value=0.0017 Score=55.46 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 255
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.40 E-value=0.0043 Score=53.45 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhC
Q 021699 23 TKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 23 ~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.-+.++..+.......+++|+++|.+|+||||+.+.|..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 445555555554445689999999999999999998863
No 256
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.39 E-value=0.0019 Score=52.96 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-.|+++|.+|+||||+++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 56899999999999999999986
No 257
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.38 E-value=0.0013 Score=54.51 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
--|+++|++|+||||+++.|.|.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 46899999999999999999975
No 258
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.32 E-value=0.0018 Score=54.37 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.--|+|+|++|+||||+++.|.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3568999999999999999999764
No 259
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.29 E-value=0.0021 Score=52.30 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-++++|++|+|||||++.+++.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~~ 32 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFKP 32 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSCG
T ss_pred EEEEECCCCCCHHHHHHHHccC
Confidence 5789999999999999987653
No 260
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.27 E-value=0.0023 Score=55.10 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
No 261
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.24 E-value=0.0023 Score=55.27 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999964
No 262
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.23 E-value=0.0023 Score=56.05 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999864
No 263
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.22 E-value=0.0023 Score=56.47 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999964
No 264
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.22 E-value=0.0023 Score=56.21 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999999964
No 265
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.22 E-value=0.0025 Score=55.02 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 266
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.21 E-value=0.0024 Score=54.18 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.8
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 267
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.21 E-value=0.0023 Score=55.75 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 268
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.21 E-value=0.0026 Score=55.14 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999964
No 269
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.20 E-value=0.0051 Score=54.62 Aligned_cols=27 Identities=37% Similarity=0.368 Sum_probs=23.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 36 NVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
...+..|+|+|.+|+|||||++.|.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999988764
No 270
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.18 E-value=0.0025 Score=54.51 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|--
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 271
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.17 E-value=0.0021 Score=56.26 Aligned_cols=23 Identities=48% Similarity=0.588 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
=.++|+|++|+|||||++.|.|.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 46899999999999999999974
No 272
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.15 E-value=0.0028 Score=52.98 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
....|+|+|.+|+|||||++.|.|.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999874
No 273
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.15 E-value=0.0027 Score=55.10 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.++|+|++|+|||||++.|.|-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999995
No 274
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.13 E-value=0.0028 Score=54.68 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999964
No 275
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.13 E-value=0.0027 Score=55.59 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 57899999999999999999864
No 276
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.11 E-value=0.0028 Score=55.01 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999974
No 277
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.10 E-value=0.0031 Score=55.07 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999999863
No 278
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.10 E-value=0.0066 Score=50.54 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=27.1
Q ss_pred HHHHHHHhhhcC-CCceEEEEEeCCCCCHHHHHHHHhC
Q 021699 25 LLELLGKLKQEN-VNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 25 l~~~~~~~~~~~-~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+.++.+++.+.. .....|+|+|.+|+||||+++.|.+
T Consensus 7 ~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 334444554432 3457899999999999999999875
No 279
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.10 E-value=0.0029 Score=55.21 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999964
No 280
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.09 E-value=0.003 Score=55.43 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.++|+|++|+|||||++.|.|-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999996
No 281
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.07 E-value=0.003 Score=55.54 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999964
No 282
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.05 E-value=0.0027 Score=51.19 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-.++++|+.|+|||||++.|.|.-
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999999864
No 283
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.04 E-value=0.072 Score=45.54 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+-.|++.|++|+|||+++.++...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999753
No 284
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.02 E-value=0.0035 Score=55.35 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999964
No 285
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.01 E-value=0.0033 Score=55.07 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999864
No 286
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.01 E-value=0.0033 Score=54.72 Aligned_cols=23 Identities=30% Similarity=0.674 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999964
No 287
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.96 E-value=0.0031 Score=56.47 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.=.++|+|++|+|||||++.|.|-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 347899999999999999999863
No 288
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.94 E-value=0.0025 Score=57.11 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|+|--
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 58999999999999999999864
No 289
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.92 E-value=0.0041 Score=51.55 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
...|+++|.+|+||||+++.|.+.-
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3578999999999999999998753
No 290
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.90 E-value=0.071 Score=46.36 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+-.+++.|++|+|||++++++.+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3467999999999999999999754
No 291
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.88 E-value=0.0041 Score=56.98 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-.++|+|++|+|||||+|.|++.-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 479999999999999999999863
No 292
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.86 E-value=0.0053 Score=52.75 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHh---CCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSII---GEK 63 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~---g~~ 63 (309)
.+..|+|+|.+|+||||+++.|. |-.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 35789999999999999999999 764
No 293
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.85 E-value=0.0047 Score=54.08 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 294
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.85 E-value=0.009 Score=46.94 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=27.1
Q ss_pred HHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 26 LELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 26 ~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.++.+.+.........|++.|++|+|||++..++...
T Consensus 11 ~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 11 NQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp HHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3344444433445678999999999999999999754
No 295
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.85 E-value=0.0036 Score=51.34 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021699 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
.++++|.+|+||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999985
No 296
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.84 E-value=0.0044 Score=51.64 Aligned_cols=24 Identities=29% Similarity=0.625 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..-|+|+|.+|+||||+++.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999999754
No 297
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.83 E-value=0.0092 Score=53.76 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=22.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..++-|+|+|.+|+|||||++.|.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999888653
No 298
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.82 E-value=0.022 Score=48.33 Aligned_cols=65 Identities=15% Similarity=0.248 Sum_probs=37.4
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecc
Q 021699 85 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 85 ~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~ 164 (309)
....+.|||||+.... .... .+ ..+|.+++++..+...+.. -..+.+ +.+..+. ..+.+|+|+.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~---~l------~~aD~viiv~~~~~~s~~~-~~~~~~-~~~~~~~---~~~~~v~N~~ 193 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRG---TA------KAVDMMIAVIEPNLNSIKT-GLNIEK-LAGDLGI---KKVRYVINKV 193 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHH---HH------TTCSEEEEEECSSHHHHHH-HHHHHH-HHHHHTC---SCEEEEEEEE
T ss_pred CCCCEEEEeCCCcccH--HHHH---HH------HHCCEEEEecCCCHHHHHH-HHHHHH-HHHHcCC---ccEEEEEeCC
Confidence 3457899999876432 2211 22 5789999997665433211 122333 2233332 4688999998
Q ss_pred c
Q 021699 165 Q 165 (309)
Q Consensus 165 D 165 (309)
+
T Consensus 194 ~ 194 (254)
T 3kjh_A 194 R 194 (254)
T ss_dssp C
T ss_pred C
Confidence 7
No 299
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.81 E-value=0.0035 Score=57.36 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.++|+|++|+|||||+++|+|.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999874
No 300
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.80 E-value=0.0028 Score=53.44 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.++++|++|+|||||++.|.|-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999986
No 301
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.80 E-value=0.0035 Score=52.04 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.++++|++|+|||||++.|.|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5789999999999999999975
No 302
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.78 E-value=0.0054 Score=54.48 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999999864
No 303
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.77 E-value=0.0041 Score=50.09 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..|+|+|.+|+||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 304
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.77 E-value=0.0022 Score=52.38 Aligned_cols=22 Identities=14% Similarity=0.404 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.++|+|.+|+|||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999975
No 305
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.76 E-value=0.0068 Score=50.33 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
....|+|+|.+|+||||+.+.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999864
No 306
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.75 E-value=0.0082 Score=53.13 Aligned_cols=42 Identities=26% Similarity=0.314 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHhhhc---CCCceEEEEEeCCCCCHHHHHHHHhC
Q 021699 20 ATQTKLLELLGKLKQE---NVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 20 ~~~~~l~~~~~~~~~~---~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+..+.+.+++..+-.. ...+.-|++.|.+|+||||+.+.|..
T Consensus 11 ~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 11 QFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444454444321 23467899999999999999999974
No 307
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.75 E-value=0.041 Score=49.78 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhhc--CCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 23 TKLLELLGKLKQE--NVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 23 ~~l~~~~~~~~~~--~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..+.++...+... +..+-.++|.|++|+||||+++.+...
T Consensus 26 ~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 26 AELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp HHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3344455555432 334568999999999999999999854
No 308
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.73 E-value=0.0032 Score=53.54 Aligned_cols=23 Identities=17% Similarity=0.523 Sum_probs=15.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHh-CC
Q 021699 40 LTILVMGKGGVGKSSTVNSII-GE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~-g~ 62 (309)
--|+|+|++|+||||+++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 368999999999999999999 75
No 309
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.72 E-value=0.0042 Score=56.21 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-.++|+|++|+|||||+|.|.|.-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999863
No 310
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.69 E-value=0.015 Score=51.67 Aligned_cols=64 Identities=9% Similarity=0.073 Sum_probs=39.7
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccCh-hHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021699 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDN-LDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~-~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
.+.+||| .......... + ..++|++++|++++....+. .-..++..+.. . ..|+++|+||+|+
T Consensus 64 ~~~iwD~--qer~~~l~~~-------~--~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-~----~~piilv~NK~DL 127 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKP-------H--VANVDQVILVVTVKMPETSTYIIDKFLVLAEK-N----ELETVMVINKMDL 127 (301)
T ss_dssp SEEEEEE--CCCSCEETTT-------T--EESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-T----TCEEEEEECCGGG
T ss_pred eEEEEEE--ccccceeecc-------c--cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-C----CCCEEEEEeHHHc
Confidence 7999999 4333322221 1 26899999998876432222 22334544433 1 2799999999998
Q ss_pred C
Q 021699 167 S 167 (309)
Q Consensus 167 ~ 167 (309)
.
T Consensus 128 ~ 128 (301)
T 1u0l_A 128 Y 128 (301)
T ss_dssp C
T ss_pred C
Confidence 5
No 311
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.68 E-value=0.0045 Score=51.43 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.-.|+|+|.+|+||||+++.|.+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999998753
No 312
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.68 E-value=0.0046 Score=50.62 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.-++++|.+|+|||||++.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35789999999999999999975
No 313
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.66 E-value=0.0063 Score=48.55 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 021699 40 LTILVMGKGGVGKSSTVNSI 59 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l 59 (309)
+.|+++|.+|+||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 56899999999999999999
No 314
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.65 E-value=0.0057 Score=56.10 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999999999964
No 315
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.65 E-value=0.006 Score=55.83 Aligned_cols=23 Identities=22% Similarity=0.618 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-++++|++|+|||||++.|.|-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999964
No 316
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.64 E-value=0.0054 Score=51.68 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
...|+++|.+|+||||+.+.|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998753
No 317
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.63 E-value=0.0068 Score=48.95 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.-.|+++|.+|+||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998865
No 318
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.63 E-value=0.014 Score=46.87 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=27.1
Q ss_pred HHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 24 KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 24 ~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+.++...+... .+-.+++.|++|+|||++++.+...
T Consensus 30 ~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 30 EIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHH
Confidence 445555555542 3456899999999999999988754
No 319
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.62 E-value=0.0055 Score=58.80 Aligned_cols=23 Identities=30% Similarity=0.548 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-.++|+|++|+|||||+|+|+|.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45999999999999999999975
No 320
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.61 E-value=0.0075 Score=48.60 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
..|++.|.+|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5689999999999999999985
No 321
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.61 E-value=0.0052 Score=51.69 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
=-++|+|++|+|||||++.|.|.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999874
No 322
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.60 E-value=0.0062 Score=54.66 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=23.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
....-|+|+|++|+|||||++.|.|.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34678999999999999999999875
No 323
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.60 E-value=0.0087 Score=49.80 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=23.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.....|+|+|.+|+||||+.+.|.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999999986
No 324
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.58 E-value=0.006 Score=50.59 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
++|+|+|.+|+||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999986
No 325
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.06 Score=50.49 Aligned_cols=69 Identities=16% Similarity=0.438 Sum_probs=42.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcccccCCCCCCCeeEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHhh--h
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL--L 116 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~~~~~~~~~t~~~~~~~~~~~g~~l~liDTPG~~~~~~~~~~~~~~i~~~~--~ 116 (309)
+--|++.|+||+|||+++.++.++- |.++..++.+.+... ...+ ....++... .
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~----------------------~~~~~~v~~s~l~sk-~~Ge-se~~ir~~F~~A 270 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATI----------------------GANFIFSPASGIVDK-YIGE-SARIIREMFAYA 270 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH----------------------TCEEEEEEGGGTCCS-SSSH-HHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh----------------------CCCEEEEehhhhccc-cchH-HHHHHHHHHHHH
Confidence 4679999999999999999998652 123444565655432 2221 122222222 1
Q ss_pred cCCCcEEEEEEeCCc
Q 021699 117 NKTIDVLLYVDRLDV 131 (309)
Q Consensus 117 ~~~~d~il~v~~~d~ 131 (309)
....-+|||+..+|.
T Consensus 271 ~~~~P~IifiDEiDa 285 (437)
T 4b4t_L 271 KEHEPCIIFMDEVDA 285 (437)
T ss_dssp HHSCSEEEEEECCCS
T ss_pred HhcCCceeeeecccc
Confidence 235568888877774
No 326
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.55 E-value=0.0065 Score=55.51 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999964
No 327
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.52 E-value=0.0056 Score=56.31 Aligned_cols=23 Identities=48% Similarity=0.588 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
=.++|+|++|+|||||++.|++.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46999999999999999999974
No 328
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.51 E-value=0.0053 Score=57.42 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
=.|+|+|++|+|||||+++|+|.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999975
No 329
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.50 E-value=0.0075 Score=51.85 Aligned_cols=25 Identities=28% Similarity=0.322 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
....|+|+|++|+|||||++.|.|.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998763
No 330
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.50 E-value=0.017 Score=48.59 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..-.+++.|++|+|||+++..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998854
No 331
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.49 E-value=0.0071 Score=55.79 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-++++|++|+|||||++.|.|-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999999964
No 332
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.48 E-value=0.014 Score=47.35 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.-.++++|++|+|||||++++.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999875
No 333
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.48 E-value=0.0072 Score=55.31 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999999964
No 334
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.47 E-value=0.0079 Score=50.32 Aligned_cols=21 Identities=38% Similarity=0.725 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHh
Q 021699 40 LTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~ 60 (309)
++|+|+|.+|+||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999885
No 335
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.46 E-value=0.0073 Score=55.34 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999964
No 336
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.45 E-value=0.0083 Score=47.96 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021699 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
.|+|+|.+|+||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 337
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.44 E-value=0.0092 Score=49.55 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
+.|+++|.+|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 338
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.44 E-value=0.0051 Score=56.27 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-+++|+|++|+|||||++.|.|.-
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999853
No 339
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.42 E-value=0.0077 Score=55.42 Aligned_cols=23 Identities=30% Similarity=0.651 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-++++|++|+|||||++.|.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999999974
No 340
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.41 E-value=0.032 Score=51.02 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=18.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHh
Q 021699 39 TLTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~ 60 (309)
.+ .+|+|++|+||||++++|.
T Consensus 24 g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EE-EEEECCTTSSHHHHHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHH
Confidence 35 4589999999999999987
No 341
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.39 E-value=0.011 Score=48.72 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..+..|+|+|.+|+||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35689999999999999999998864
No 342
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.38 E-value=0.0081 Score=55.27 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 57899999999999999999964
No 343
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.35 E-value=0.0092 Score=49.96 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
++|+|+|.+|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999863
No 344
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.35 E-value=0.0099 Score=47.99 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..|+++|.+|+||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999753
No 345
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=95.33 E-value=0.11 Score=47.45 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 105 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 105 ~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
+.+.+.++.+. ...|++++|+++.. .+..+...+.+.++. +|+++|+||+|+.+.
T Consensus 57 e~f~~~l~~i~--~~~~~il~VvD~~d-----~~~~~~~~l~~~~~~---~p~ilV~NK~DL~~~ 111 (368)
T 3h2y_A 57 DDFLRILNGIG--KSDALVVKIVDIFD-----FNGSWLPGLHRFVGN---NKVLLVGNKADLIPK 111 (368)
T ss_dssp HHHHHHHHHHH--HSCCEEEEEEETTS-----HHHHCCTTHHHHSSS---SCEEEEEECGGGSCT
T ss_pred HHHHHHHHHHh--ccCcEEEEEEECCC-----CcccHHHHHHHHhCC---CcEEEEEEChhcCCc
Confidence 34444444333 47789999977642 234455566665552 799999999999744
No 346
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.30 E-value=0.0089 Score=50.90 Aligned_cols=20 Identities=35% Similarity=0.624 Sum_probs=18.4
Q ss_pred EEEEEeCCCCCHHHHHHHHh
Q 021699 41 TILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~ 60 (309)
-++|+|++|+|||||++.|+
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 57889999999999999888
No 347
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.30 E-value=0.01 Score=48.29 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
...|+|.|.+|+||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999864
No 348
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.29 E-value=0.0098 Score=48.95 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
+.|+++|.+|+||||+.+.|..
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHHH
Confidence 3689999999999999998875
No 349
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.27 E-value=0.013 Score=47.89 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+..|+++|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999863
No 350
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.25 E-value=0.0097 Score=55.10 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|-.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 57999999999999999999864
No 351
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.25 E-value=0.023 Score=47.54 Aligned_cols=66 Identities=15% Similarity=0.061 Sum_probs=38.8
Q ss_pred CeEEEEEeCCCC-CCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecc
Q 021699 86 GFTLNIVDTPGL-IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 164 (309)
Q Consensus 86 g~~l~liDTPG~-~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~ 164 (309)
...+.|+|||+. ... .....+ ..+|.++++...+...+ ..-..+++.+.+.. ..++.+|+|++
T Consensus 67 ~yD~viiD~p~~~~~~-----~~~~~l------~~aD~viiv~~~~~~~~-~~~~~~~~~l~~~~----~~~~~vv~N~~ 130 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE-----DLEALA------DGCDLLVIPSTPDALAL-DALMLTIETLQKLG----NNRFRILLTII 130 (209)
T ss_dssp GCSEEEEEEECCCSSS-----HHHHHH------HTSSEEEEEECSSHHHH-HHHHHHHHHHHHTC----SSSEEEEECSB
T ss_pred cCCEEEEeCCCCcCcH-----HHHHHH------HHCCEEEEEecCCchhH-HHHHHHHHHHHhcc----CCCEEEEEEec
Confidence 457999999986 321 222223 37899999966553222 11233444554422 14688999999
Q ss_pred cCC
Q 021699 165 QLS 167 (309)
Q Consensus 165 D~~ 167 (309)
|..
T Consensus 131 ~~~ 133 (209)
T 3cwq_A 131 PPY 133 (209)
T ss_dssp CCT
T ss_pred CCc
Confidence 853
No 352
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.24 E-value=0.099 Score=48.78 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+--|++.|++|+|||+++.++.++
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 467999999999999999999975
No 353
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.24 E-value=0.05 Score=48.12 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=36.9
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEE-EEEecc
Q 021699 86 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL-IVLTHA 164 (309)
Q Consensus 86 g~~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~i-iV~tk~ 164 (309)
+..+.|||||+........ ..+ ..+|.+++|+..+...+ ..-..+++.+.+. +.....+++ +|+|++
T Consensus 156 ~yD~ViiD~p~~~~~~~~~----~~l------~~aD~viiv~~~~~~s~-~~~~~~~~~l~~~-~~~~~~~~~gvV~N~~ 223 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGGFA----APL------QHADQAVVVTANDFDSI-YAMNRIIAAVQAK-SKNYKVRLAGCVANRS 223 (307)
T ss_dssp SCSEEEEEECCSSCCGGGG----GGG------GTCSEEEEEECSSHHHH-HHHHHHHHHHHTT-TTTCCCEEEEEEEESC
T ss_pred cCCEEEEeCCCccchHHHH----HHH------HHCCEEEEEecCcHHHH-HHHHHHHHHHHHh-hhcCCCceEEEEEecC
Confidence 3578999998764321110 111 47899999966553222 1223345555443 222223433 899999
Q ss_pred cC
Q 021699 165 QL 166 (309)
Q Consensus 165 D~ 166 (309)
+.
T Consensus 224 ~~ 225 (307)
T 3end_A 224 RA 225 (307)
T ss_dssp SC
T ss_pred Cc
Confidence 83
No 354
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.19 E-value=0.012 Score=47.79 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=20.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHh
Q 021699 39 TLTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~ 60 (309)
...|+++|.+|+||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999886
No 355
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.19 E-value=0.0099 Score=49.24 Aligned_cols=23 Identities=43% Similarity=0.536 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
...|+|+|.+|+||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 356
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.16 E-value=0.0068 Score=55.27 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999999964
No 357
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.15 E-value=0.013 Score=50.54 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..+..|+++|.+|+||||+.+.|...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34688999999999999999998753
No 358
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.14 E-value=0.013 Score=53.72 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=20.9
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHH
Q 021699 36 NVNTLTILVMGKGGVGKSSTVNSI 59 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l 59 (309)
.....||+|+|.+|+||||++..+
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHH
Confidence 346799999999999999999876
No 359
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.14 E-value=0.011 Score=52.70 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
....|+|+|.+|+|||||++.|.|.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 360
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.10 E-value=0.011 Score=46.28 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
....|++.|++|+|||++..++...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHh
Confidence 4567999999999999999988754
No 361
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.09 E-value=0.015 Score=48.15 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=21.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHhC
Q 021699 37 VNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 37 ~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
..++.|+++|.+|+||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999998863
No 362
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.08 E-value=0.013 Score=48.59 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
-.|+++|.+|+||||+.+.|.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 363
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.08 E-value=0.014 Score=47.56 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+..|+++|.+|+||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999988853
No 364
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.07 E-value=0.015 Score=50.30 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=21.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~ 60 (309)
....|+|+|.+|+||||+++.|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999998
No 365
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.06 E-value=0.11 Score=48.07 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+--|++.|+||+|||+++.++.++
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 457999999999999999999875
No 366
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.05 E-value=0.014 Score=47.50 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021699 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
.|+|.|.+|+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 367
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.04 E-value=0.39 Score=42.82 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+-.|++.|++|+|||+++.++...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999999864
No 368
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.02 E-value=0.021 Score=45.85 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=26.8
Q ss_pred HHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 24 KLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 24 ~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+..+.+.+... ..-.+++.|++|+|||+++..+...
T Consensus 30 ~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 30 EIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHH
Confidence 444555555442 3457899999999999999888754
No 369
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.01 E-value=0.016 Score=47.43 Aligned_cols=25 Identities=36% Similarity=0.601 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
...+|+++|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999988754
No 370
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.99 E-value=0.0098 Score=50.61 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
...-|+|.|.+|+||||+++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999875
No 371
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.99 E-value=0.015 Score=48.75 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
++|++.|.+|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
No 372
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.99 E-value=0.014 Score=46.60 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
++|++.|.+|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 373
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.99 E-value=0.014 Score=47.42 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=18.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021699 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
-.+|+|++|+||||++.+|.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999864
No 374
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.97 E-value=0.086 Score=49.27 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+--|++.|++|+|||+++.++.++
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999999864
No 375
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.95 E-value=0.0066 Score=55.46 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999964
No 376
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.91 E-value=0.018 Score=47.68 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+..|++.|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 47899999999999999999864
No 377
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.87 E-value=0.016 Score=47.12 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
...|+++|.+|+||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
No 378
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.86 E-value=0.018 Score=50.55 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=20.0
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021699 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
++++|++|+|||||+++|.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999975
No 379
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.85 E-value=0.018 Score=47.42 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+..|++.|.+|+||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 478999999999999999999754
No 380
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.82 E-value=0.15 Score=44.57 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+-.+++.|++|+|||++++++.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3468999999999999999999864
No 381
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.81 E-value=0.02 Score=47.59 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.+..|+|.|.+|+||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999874
No 382
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.79 E-value=0.017 Score=47.85 Aligned_cols=24 Identities=21% Similarity=0.255 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.+..|+|.|.+|+||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999874
No 383
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.78 E-value=0.019 Score=46.43 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
....|+++|.+|+||||+.+.|.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999875
No 384
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.75 E-value=0.021 Score=46.71 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=20.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
....|+++|.+|+||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998863
No 385
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.75 E-value=0.04 Score=45.34 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.5
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+++.|++|+|||+++..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999988753
No 386
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.72 E-value=0.019 Score=48.49 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
...|+++|.+|+||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998863
No 387
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.71 E-value=0.02 Score=48.10 Aligned_cols=24 Identities=17% Similarity=0.509 Sum_probs=21.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
..+.|+++|.+|+||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998864
No 388
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.69 E-value=0.037 Score=50.91 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..-.++++|++|+|||||++.|.+.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457899999999999999999863
No 389
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.68 E-value=0.017 Score=56.26 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|--
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999999864
No 390
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.67 E-value=0.014 Score=50.25 Aligned_cols=22 Identities=36% Similarity=0.721 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.++++|++|+|||||++++.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999875
No 391
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.65 E-value=0.02 Score=48.18 Aligned_cols=24 Identities=21% Similarity=0.410 Sum_probs=21.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.+..|+|+|.+|+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998864
No 392
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.65 E-value=0.011 Score=53.16 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-++|+|..|+|||||+|.|+|..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 35788999999999999999753
No 393
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.64 E-value=0.018 Score=55.65 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 394
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.64 E-value=0.021 Score=49.20 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.++.|+|.|.+|+||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999998854
No 395
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.63 E-value=0.021 Score=47.77 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
++.|+|.|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999864
No 396
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.61 E-value=0.031 Score=48.06 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+-.++++|++|+|||++++++.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 456999999999999999999864
No 397
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.58 E-value=0.026 Score=45.98 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
....|+++|.+|+||||+++.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999988753
No 398
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.57 E-value=0.015 Score=48.67 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021699 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
-++++|++|+|||||++.+.+
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578899999999999999984
No 399
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.53 E-value=0.021 Score=46.45 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
+.|++.|.+|+||||+.+.|..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 400
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.52 E-value=0.018 Score=56.04 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|--
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 401
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.50 E-value=0.042 Score=49.18 Aligned_cols=40 Identities=30% Similarity=0.337 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 23 TKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 23 ~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+.+.+.+......+...-.|++.|++|+|||+++.++...
T Consensus 39 ~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 39 KNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp HHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3445555554433444567999999999999999999643
No 402
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.49 E-value=0.033 Score=50.15 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999875
No 403
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.49 E-value=0.024 Score=46.47 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+..|+++|.+|+||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988864
No 404
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.46 E-value=0.029 Score=46.32 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=21.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
....|+|.|.+|+||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998874
No 405
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.46 E-value=0.023 Score=46.49 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021699 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
-|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998874
No 406
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.45 E-value=0.03 Score=52.99 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.=.++|+|++|+|||||++.|.|-.
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3578999999999999999999753
No 407
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.43 E-value=0.023 Score=45.96 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHh
Q 021699 39 TLTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~ 60 (309)
...|+++|.+|+||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4579999999999999999887
No 408
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.41 E-value=0.018 Score=50.85 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-++|+|++|+|||||++.|.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4788999999999999988864
No 409
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.40 E-value=0.02 Score=55.32 Aligned_cols=23 Identities=39% Similarity=0.694 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
-++++|++|+|||||++.|.|.-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999999964
No 410
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.39 E-value=0.69 Score=40.82 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=17.6
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-+++.|++|+|||+++.++...
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHHH
Confidence 3566677999999999999743
No 411
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.37 E-value=0.023 Score=47.97 Aligned_cols=22 Identities=32% Similarity=0.595 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
+.|++.|.+|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998863
No 412
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.36 E-value=0.021 Score=46.10 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021699 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
+|+|+|.+|+||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 413
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.31 E-value=0.023 Score=49.18 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021699 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
-|+|+|.+|+||||+.+.|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999874
No 414
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.30 E-value=0.21 Score=47.06 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+--|++.|++|+|||+|+.++.++
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3567999999999999999999865
No 415
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.30 E-value=0.029 Score=45.53 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+..|++.|.+|+||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998863
No 416
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.29 E-value=0.02 Score=52.06 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=+++++|.+|+|||||++.|.|..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999999864
No 417
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.022 Score=55.79 Aligned_cols=23 Identities=26% Similarity=0.650 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999999964
No 418
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.28 E-value=0.042 Score=47.44 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+..|++.|++|+|||+++.++...
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 4578999999999999999999854
No 419
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.25 E-value=0.018 Score=54.66 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
=.++|+|++|+|||||++.|.|-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 35789999999999999999873
No 420
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.21 E-value=0.027 Score=45.83 Aligned_cols=23 Identities=17% Similarity=0.227 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..|+++|.+|+|||||++.|+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999999863
No 421
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.21 E-value=0.028 Score=48.20 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.++.|+|.|.+|+||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998873
No 422
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.21 E-value=0.017 Score=56.41 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|--
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 68999999999999999999864
No 423
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.19 E-value=0.02 Score=50.02 Aligned_cols=22 Identities=36% Similarity=0.721 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.++++|++|+|||||+++|.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999999975
No 424
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.19 E-value=0.03 Score=49.35 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-.+++.|++|+|||+++.++.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999988864
No 425
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.19 E-value=0.012 Score=48.98 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021699 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
-|+|.|.+|+||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 426
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.17 E-value=0.025 Score=55.40 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|.-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68999999999999999999964
No 427
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.15 E-value=0.017 Score=56.42 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|--
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58999999999999999999864
No 428
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.13 E-value=0.018 Score=56.13 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|--
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999864
No 429
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.12 E-value=0.016 Score=56.45 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|.|.-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68999999999999999999864
No 430
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.12 E-value=0.019 Score=46.42 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=16.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
+..|++.|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999863
No 431
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.12 E-value=0.39 Score=43.88 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.-.|++.|++|+|||+++.++...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999644
No 432
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.11 E-value=0.026 Score=44.66 Aligned_cols=20 Identities=40% Similarity=0.863 Sum_probs=17.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHh
Q 021699 40 LTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~ 60 (309)
++ +|+|++|+||||++.+|.
T Consensus 25 ~~-~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 IN-LIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EE-EEECCTTSSHHHHHHHHH
T ss_pred eE-EEECCCCCCHHHHHHHHH
Confidence 54 788999999999998875
No 433
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.10 E-value=0.049 Score=49.16 Aligned_cols=39 Identities=18% Similarity=0.355 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhc--CCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 24 KLLELLGKLKQE--NVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 24 ~l~~~~~~~~~~--~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+.++...+... +...-.++|.|++|+|||||++.+.+.
T Consensus 28 e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 28 QIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp HHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 344454444432 334457899999999999999999864
No 434
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.10 E-value=0.076 Score=47.91 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
--+++.|++|+||||++..+..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999988874
No 435
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.08 E-value=0.031 Score=50.32 Aligned_cols=20 Identities=25% Similarity=0.606 Sum_probs=18.9
Q ss_pred EEEEeCCCCCHHHHHHHHhC
Q 021699 42 ILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g 61 (309)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876
No 436
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.08 E-value=0.031 Score=46.87 Aligned_cols=22 Identities=18% Similarity=0.517 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
++|+++|+||+||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988874
No 437
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.03 E-value=0.027 Score=45.73 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
..|+++|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999988853
No 438
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.03 E-value=0.24 Score=43.52 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=32.3
Q ss_pred eCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 93 DTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 93 DTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
+.||.. .++.+.+.+.+ ..+|+|++|+++.. ..+.....+- +..+. +|.++|+||+|+.+
T Consensus 5 w~PGhm------~ka~~~~~~~l--~~aDvVl~VvDAr~-p~~~~~~~l~----~~l~~---kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 5 WFPGHM------AKARREVTEKL--KLIDIVYELVDARI-PMSSRNPMIE----DILKN---KPRIMLLNKADKAD 64 (282)
T ss_dssp ----CT------THHHHHHHHHG--GGCSEEEEEEETTS-TTTTSCHHHH----HHCSS---SCEEEEEECGGGSC
T ss_pred CCchHH------HHHHHHHHHHH--hhCCEEEEEEeCCC-CCccCCHHHH----HHHCC---CCEEEEEECcccCC
Confidence 457762 13334444444 58999999977643 1222212222 22232 79999999999973
No 439
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.02 E-value=0.035 Score=47.11 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
..++|+++|.+|+||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
No 440
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.01 E-value=0.073 Score=43.75 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
-.+++.|++|+|||+++.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998854
No 441
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.00 E-value=0.024 Score=47.16 Aligned_cols=22 Identities=18% Similarity=0.037 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
--++++|++|+|||||++.+.+
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999987
No 442
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.00 E-value=0.033 Score=46.77 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.+.|+++|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999998853
No 443
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.99 E-value=0.038 Score=48.58 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=21.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHh
Q 021699 38 NTLTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~ 60 (309)
.++.|+|.|.+|+||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46889999999999999999887
No 444
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.98 E-value=0.062 Score=44.68 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
--++|.|++|+||||++..+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988753
No 445
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.95 E-value=0.13 Score=48.21 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+--|++.|+||+|||+++.++.++
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 467999999999999999999875
No 446
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.94 E-value=0.028 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|.|-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999964
No 447
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.94 E-value=0.03 Score=44.73 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021699 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
.|++.|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988863
No 448
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.91 E-value=0.026 Score=53.01 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
=+++|+|.+|+|||||++.|.|..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 478999999999999999999864
No 449
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.90 E-value=0.037 Score=47.97 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
...|+++|.+|+||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999874
No 450
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.87 E-value=0.017 Score=61.64 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.7
Q ss_pred EEEEEeCCCCCHHHHHHHHhCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+|+|+|++|+|||||++.|++-
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999999975
No 451
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.85 E-value=0.036 Score=45.93 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.+..|+|+|.+|+||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988864
No 452
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.80 E-value=0.42 Score=44.73 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+-.|++.|++|+|||+++.++...
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999864
No 453
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.76 E-value=0.026 Score=48.92 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
-.|+++|.+|+||||+.+.|.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 454
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.74 E-value=0.038 Score=44.11 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
-+|+|.|.+|+||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999988853
No 455
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.74 E-value=0.094 Score=47.33 Aligned_cols=40 Identities=15% Similarity=0.303 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 23 TKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 23 ~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+.+..+...+.......-.+++.|++|+|||+++.++...
T Consensus 54 ~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 54 RAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3344445555443323358999999999999999988753
No 456
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.72 E-value=0.065 Score=46.42 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=25.7
Q ss_pred HHHHhhhc-CCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 28 LLGKLKQE-NVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 28 ~~~~~~~~-~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+.+.+... ...+-.+++.|++|+|||+++.++...
T Consensus 52 l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 52 LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp HHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34444322 334578999999999999999998754
No 457
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.69 E-value=0.049 Score=48.28 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhC
Q 021699 21 TQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 21 ~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
....+.+.+......+...-.+++.|++|+|||+++.++..
T Consensus 20 ~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 20 LKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp HHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 33445555554443333456799999999999999999874
No 458
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.67 E-value=0.037 Score=53.41 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|+.|+|||||++.|+|..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999974
No 459
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.65 E-value=0.03 Score=47.37 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
--++|+|++|+|||||+..|++.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 45789999999999999999974
No 460
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.63 E-value=0.17 Score=44.87 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=29.7
Q ss_pred CCCcEEEEEEeCCccccChhH-HHHHHHHHHHhCccccCcEEEEEecccCCC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLD-KQITRAITDNFGEQIWKRALIVLTHAQLSL 168 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d-~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~ 168 (309)
.++|++++|+++....++... .+++..+.. . ..|+++|+||+|+.+
T Consensus 78 ~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-~----~~~~ilV~NK~DL~~ 124 (302)
T 2yv5_A 78 ANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-F----KVEPVIVFNKIDLLN 124 (302)
T ss_dssp ESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-T----TCEEEEEECCGGGCC
T ss_pred HhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-C----CCCEEEEEEcccCCC
Confidence 589999999877532223221 234444433 1 278999999999963
No 461
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=93.61 E-value=0.19 Score=45.85 Aligned_cols=44 Identities=9% Similarity=0.073 Sum_probs=29.0
Q ss_pred CCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccCCCC
Q 021699 118 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 169 (309)
Q Consensus 118 ~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~~~~ 169 (309)
.+.+++++|+++.. +. ..+...+.+.++. +|+++|+||+|+.++
T Consensus 70 ~~~~lil~VvD~~d--~~---~s~~~~l~~~l~~---~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 70 ESKALVVNIVDIFD--FN---GSFIPGLPRFAAD---NPILLVGNKADLLPR 113 (369)
T ss_dssp HHCCEEEEEEETTC--SG---GGCCSSHHHHCTT---SCEEEEEECGGGSCT
T ss_pred ccCcEEEEEEECCC--CC---CchhhHHHHHhCC---CCEEEEEEChhcCCC
Confidence 46789999977643 21 1233334444442 799999999999754
No 462
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.60 E-value=0.1 Score=45.91 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=21.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
....+++.|++|+|||+++.++...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999877643
No 463
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.51 E-value=0.05 Score=45.32 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
....|+++|.+|+||||+.+.|.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999988753
No 464
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.51 E-value=0.04 Score=53.94 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|+.|+|||||++.|.|..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999964
No 465
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.49 E-value=0.068 Score=47.48 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=26.6
Q ss_pred HHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhC
Q 021699 26 LELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 26 ~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
.++...+.........|++.|++|+|||++..++..
T Consensus 12 ~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 12 QHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp HHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence 334444444334567899999999999999999875
No 466
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.31 E-value=0.041 Score=53.84 Aligned_cols=22 Identities=27% Similarity=0.684 Sum_probs=20.6
Q ss_pred EEEEeCCCCCHHHHHHHHhCCC
Q 021699 42 ILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~~ 63 (309)
++|+|++|+|||||++.|.|-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6999999999999999999975
No 467
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.18 E-value=0.047 Score=45.65 Aligned_cols=24 Identities=38% Similarity=0.642 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..-|+|+|.||+|||||...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456999999999999999999865
No 468
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.17 E-value=0.055 Score=47.57 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
..|+++|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999975
No 469
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.06 E-value=0.047 Score=58.27 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
+++|+|++|+|||||++.|+|.-
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSS
T ss_pred EEEEEecCCCcHHHHHHHhcccc
Confidence 68999999999999999999864
No 470
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.04 E-value=0.13 Score=46.63 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+-.++|.|++|+|||++++.+...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999854
No 471
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=92.99 E-value=0.058 Score=49.16 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=20.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHh
Q 021699 36 NVNTLTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~ 60 (309)
...++||+++|..++||||++..+-
T Consensus 29 ~~~~~klLlLG~geSGKST~~KQmk 53 (353)
T 1cip_A 29 AAREVKLLLLGAGESGKSTIVKQMK 53 (353)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHH
T ss_pred hcccceEEEEcCCCCCchhHHHHHH
Confidence 4468999999999999999986553
No 472
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.93 E-value=0.047 Score=52.78 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
....|+++|.+|+||||+++.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 4578999999999999999999875
No 473
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.93 E-value=0.046 Score=47.73 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021699 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
-++|+|++|+|||||+..+.+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578899999999999998885
No 474
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=92.93 E-value=0.14 Score=48.17 Aligned_cols=42 Identities=19% Similarity=0.292 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 21 TQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 21 ~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..+.+.+++..+......+-.+++.|++|+|||++..++...
T Consensus 45 ~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 45 AREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp HHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 344455555555543334468999999999999999888753
No 475
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.80 E-value=0.078 Score=45.07 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
....|++.|.+|+||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999988753
No 476
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.77 E-value=0.15 Score=45.35 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.-.+++.|++|+|||++++++.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356899999999999999999864
No 477
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.74 E-value=0.095 Score=47.05 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=19.4
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021699 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
+++.|++|+||||+++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998864
No 478
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.66 E-value=0.081 Score=44.89 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g 61 (309)
....|+|+|.+|+||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998874
No 479
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=92.57 E-value=3.3 Score=36.09 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=38.1
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHhhhcCCCcEEEEEEeCCccccChhHHHHHHHHHHHhCccccCcEEEEEecccC
Q 021699 88 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 166 (309)
Q Consensus 88 ~l~liDTPG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~d~~~l~~l~~~~g~~~~~~~iiV~tk~D~ 166 (309)
.+.|||||+.... .+.. .+ ...+|.+|+|++.+.... ..-...++.+.+. |. ..+-+|+|++|.
T Consensus 203 D~VIIDtpp~~~~--~da~---~l-----~~~aD~vllVv~~~~~~~-~~~~~~~~~l~~~-g~---~~~GvVlN~v~~ 266 (286)
T 3la6_A 203 DLVLIDTPPILAV--TDAA---IV-----GRHVGTTLMVARYAVNTL-KEVETSLSRFEQN-GI---PVKGVILNSIFR 266 (286)
T ss_dssp SEEEEECCCTTTC--THHH---HH-----TTTCSEEEEEEETTTSBH-HHHHHHHHHHHHT-TC---CCCEEEEEEECC
T ss_pred CEEEEcCCCCcch--HHHH---HH-----HHHCCeEEEEEeCCCCcH-HHHHHHHHHHHhC-CC---CEEEEEEcCccc
Confidence 4899999988432 1111 11 157899999977764322 2223445555443 32 456789999985
No 480
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=92.50 E-value=0.053 Score=57.75 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++++|++|+|||||++.|+|.-
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 481
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=92.49 E-value=0.099 Score=46.87 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=23.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 36 NVNTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+..+-.++|.|++|+|||++++.++.+
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 346688999999999999999999864
No 482
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.48 E-value=0.038 Score=56.81 Aligned_cols=23 Identities=43% Similarity=0.725 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCHHHHHHHHhCCC
Q 021699 41 TILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
.++|+|++|+|||||++.|+|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 483
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.46 E-value=0.11 Score=46.39 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+-.|++.|++|+|||+++.++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 467999999999999999999754
No 484
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.45 E-value=0.077 Score=43.63 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021699 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 485
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=92.43 E-value=0.07 Score=48.62 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=21.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHh
Q 021699 36 NVNTLTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 36 ~~~~l~I~vvG~~g~GKSSliN~l~ 60 (309)
+....||+++|.+++||||++..+-
T Consensus 6 ~~~~~k~lllG~~~sGKsT~~kq~~ 30 (354)
T 2xtz_A 6 GIHIRKLLLLGAGESGKSTIFKQIK 30 (354)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCceeEEEECCCCCcHHHHHHHHH
Confidence 4457899999999999999997764
No 486
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=92.43 E-value=0.073 Score=44.32 Aligned_cols=19 Identities=42% Similarity=0.802 Sum_probs=16.5
Q ss_pred EEEEeCCCCCHHHHHHHHh
Q 021699 42 ILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~ 60 (309)
.+|+|+.|+||||++.+|.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4677999999999998874
No 487
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.41 E-value=0.067 Score=47.88 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEK 63 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~ 63 (309)
..-|++.|.+|+||||+.+.|.+..
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhcC
Confidence 3579999999999999999999753
No 488
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.37 E-value=0.1 Score=47.19 Aligned_cols=57 Identities=14% Similarity=0.247 Sum_probs=35.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCCCcc-cccC--------CCCCCCeeEEEEeeeCCeEEEEEeCCCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGEKAV-TVST--------FQSEGPRPVMVSRSRAGFTLNIVDTPGL 97 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~~~~-~~~~--------~~~~t~~~~~~~~~~~g~~l~liDTPG~ 97 (309)
+.-|+|+|+||+|||||...|...-.. .++. ..-.|..+. ..+..|.+..++|...+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~--~eE~~gvphhlidi~~~ 105 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKIS--VPDRGGVPHHLLGEVDP 105 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCC--SGGGTTCCEESSSCBCG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCC--HHHHcCCCEeeccccCc
Confidence 356999999999999999999975321 1111 111233221 12356777777887766
No 489
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.33 E-value=0.098 Score=47.44 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.+-.|++.|++|+|||++..+|...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999753
No 490
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.29 E-value=0.21 Score=46.90 Aligned_cols=46 Identities=15% Similarity=0.337 Sum_probs=35.2
Q ss_pred cccCCCChhhHHHHHHHHHHhhhcCCCceEEEEEeCCCCCHHHHHHHHh
Q 021699 12 MGIQQFPPATQTKLLELLGKLKQENVNTLTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 12 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~l~I~vvG~~g~GKSSliN~l~ 60 (309)
+.+.+|-..-++.+..++..+.... -.++|.|.+|+|||+++..+.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~ 66 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFII 66 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHH
Confidence 5677777777777777766666522 278999999999999988776
No 491
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.25 E-value=0.13 Score=43.11 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHhC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g 61 (309)
-.+++.|++|+||||++.+|..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999888764
No 492
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=92.24 E-value=0.094 Score=48.62 Aligned_cols=27 Identities=33% Similarity=0.461 Sum_probs=21.9
Q ss_pred hcCCCceEEEEEeCCCCCHHHHHHHHh
Q 021699 34 QENVNTLTILVMGKGGVGKSSTVNSII 60 (309)
Q Consensus 34 ~~~~~~l~I~vvG~~g~GKSSliN~l~ 60 (309)
.....++||+++|...+||||++..+-
T Consensus 35 ~~~~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 35 QVYRATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp -CCTTEEEEEEEESTTSSHHHHHHHHH
T ss_pred HHhhccceEEEecCCCCchhhHHHHHH
Confidence 334568999999999999999997653
No 493
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.21 E-value=0.1 Score=44.42 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
+..|++.|..|+||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999998743
No 494
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.15 E-value=0.09 Score=49.67 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHhCC
Q 021699 38 NTLTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 38 ~~l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.++.|+++|.+|+||||+.+.|...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999998753
No 495
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=92.10 E-value=0.075 Score=50.82 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=19.6
Q ss_pred EEEEEeCCCCCHHHHHHHHhC
Q 021699 41 TILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 41 ~I~vvG~~g~GKSSliN~l~g 61 (309)
.++|+|.||+|||+++|+|+.
T Consensus 169 HlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 169 HLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp SEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999885
No 496
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.10 E-value=0.08 Score=47.92 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
.-|+|+|.+|+|||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 46899999999999999888753
No 497
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.05 E-value=0.14 Score=45.63 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=19.4
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021699 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
+++.|++|+||||+++++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998864
No 498
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.03 E-value=0.081 Score=44.08 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHhC
Q 021699 39 TLTILVMGKGGVGKSSTVNSIIG 61 (309)
Q Consensus 39 ~l~I~vvG~~g~GKSSliN~l~g 61 (309)
++.|+++|.+|+||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999988764
No 499
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.02 E-value=0.096 Score=47.06 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHhCC
Q 021699 40 LTILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 40 l~I~vvG~~g~GKSSliN~l~g~ 62 (309)
..|+|+|.+|+||||+...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998854
No 500
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=91.95 E-value=0.019 Score=48.97 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=18.7
Q ss_pred EEEEeCCCCCHHHHHHHHhCC
Q 021699 42 ILVMGKGGVGKSSTVNSIIGE 62 (309)
Q Consensus 42 I~vvG~~g~GKSSliN~l~g~ 62 (309)
++|+|++|+|||||+++|.|-
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 368899999999999999975
Done!