BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021701
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S9C|A Chain A, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|B Chain B, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|C Chain C, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|D Chain D, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|E Chain E, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|F Chain F, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|G Chain G, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|H Chain H, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|I Chain I, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|J Chain J, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|K Chain K, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|L Chain L, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
Length = 298
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 125/305 (40%), Positives = 178/305 (58%), Gaps = 20/305 (6%)
Query: 1 MAKSSGINPELLLSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQF 60
MA +SG + QKLP ++ YTE +A +YALGVGA +D D LK++Y G
Sbjct: 1 MAATSGFAGAI--GQKLPPFSYAYTELEAIMYALGVGASIKDPKD---LKFIYE--GSSD 53
Query: 61 IQVLPTFSALFSFE-LEPSGAIDLPGLQHDPRLLLHGQQYMELYKPFPSSASIRNEACIA 119
LPTF + + + G ++PGL + +LHG+QY+ELYKP P + ++ EA +A
Sbjct: 54 FSCLPTFGVIIGQKSMMGGGLAEIPGLSINFAKVLHGEQYLELYKPLPRAGKLKCEAVVA 113
Query: 120 GLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSV 179
+ DKG ++ ++ SY+ + EL+C N+ + FL G+GGF K + V V
Sbjct: 114 DVLDKGSGVVIIMDVYSYSEK--ELICHNQFSLFLVGSGGFGG--------KRTSDKVKV 163
Query: 180 -VKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFA 238
V IP P AV D T +QA +YRLSGD+NPLH DP A AGF +PILHGLCT GF+
Sbjct: 164 AVAIPNRPPDAVLTDTTSLNQAALYRLSGDWNPLHIDPNFASLAGFDKPILHGLCTFGFS 223
Query: 239 VRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWLQGLRVIYQVKVKERNRSALS- 297
R +++ D + K + +RF VYPG+TL TEMW +G R+ +Q KV+E +S
Sbjct: 224 ARRVLQQFADNDVSRFKAVKARFAKPVYPGQTLQTEMWKEGNRIHFQTKVQETGDIVISN 283
Query: 298 GFVDV 302
+VD+
Sbjct: 284 AYVDL 288
>pdb|3OML|A Chain A, Structure Of Full-Length Peroxisomal Multifunctional
Enzyme Type 2 From Drosophila Melanogaster
Length = 613
Score = 180 bits (457), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 159/289 (55%), Gaps = 17/289 (5%)
Query: 19 EKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPS 78
E F + ++ YALG+GA ++A D ++++Y EN F +PTF L L+ S
Sbjct: 322 EDAFEFNSKELITYALGIGASVKNAKD---MRFLY-ENDADF-AAIPTFFVLPGLLLQMS 376
Query: 79 G----AIDLPGLQHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIET 134
+ LP Q D +LHG+QY+E+ P+S ++ + + DKG A++ +
Sbjct: 377 TDKLLSKALPNSQVDFSNILHGEQYLEIVDDLPTSGTLLTNGKVFDVMDKGSGAVVVTNS 436
Query: 135 KSYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDY 194
+S++ ESG LL N+ T F+ GAG F P + +P+ P QP A +
Sbjct: 437 ESFD-ESGRLLVRNQSTTFIVGAGKFGGKKDPIA----GVVPLQ--PAPNRQPDATVQYT 489
Query: 195 TQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMV 254
T QA +YRLSGD NPLH DP +A AGF PILHGLCT+GF+VRA++ +P +
Sbjct: 490 TSEDQAALYRLSGDKNPLHIDPQMALLAGFKTPILHGLCTLGFSVRAVLAQFADNNPALF 549
Query: 255 KNIFSRFLLHVYPGETLVTEMWLQGLRVIYQVKVKERNRSALSG-FVDV 302
K + RF V PG+TL ++W QG R+ ++ V E + +SG +VD+
Sbjct: 550 KAVKVRFSGPVIPGQTLRVDLWKQGTRINFRTVVVETGKEVISGAYVDL 598
>pdb|2CDH|S Chain S, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|T Chain T, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|U Chain U, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|V Chain V, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|W Chain W, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|X Chain X, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 248
Score = 180 bits (457), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 108/291 (37%), Positives = 154/291 (52%), Gaps = 46/291 (15%)
Query: 13 LSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFS 72
+ QKLP ++ YTE +A +YALGVGA +D D LK++Y G LPTF +
Sbjct: 2 IGQKLPPFSYAYTELEAIMYALGVGASIKDPKD---LKFIYE--GSSDFSCLPTFGVI-- 54
Query: 73 FELEPSGAIDLPGLQHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEI 132
+ ++LHG+QY+ELYKP P + ++ EA +A + ++ I
Sbjct: 55 -------------IGQKSMMVLHGEQYLELYKPLPRAGKLKCEAVVADV-------LVVI 94
Query: 133 ETKSYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFE 192
Y+ EL+C N+ + FL + V+V IP P AV
Sbjct: 95 IMDVYSYSEKELICHNQFSLFLS-----------------DKVKVAVA-IPNRPPDAVLT 136
Query: 193 DYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPN 252
D T +QA +YRLSGD+NPLH DP A AGF +PILHGLCT GF+ R +++ D +
Sbjct: 137 DTTSLNQAALYRLSGDWNPLHIDPNFASLAGFDKPILHGLCTFGFSARRVLQQFADNDVS 196
Query: 253 MVKNIFSRFLLHVYPGETLVTEMWLQGLRVIYQVKVKERNRSALS-GFVDV 302
K + +RF VYPG+TL TEMW +G R+ +Q KV+E +S +VD+
Sbjct: 197 RFKAVKARFAKPVYPGQTLQTEMWKEGNRIHFQTKVQETGDIVISNAYVDL 247
>pdb|3KH8|A Chain A, Crystal Structure Of Maoc-Like Dehydratase From
Phytophthora Capsici
pdb|3KH8|B Chain B, Crystal Structure Of Maoc-Like Dehydratase From
Phytophthora Capsici
Length = 332
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/309 (34%), Positives = 161/309 (52%), Gaps = 37/309 (11%)
Query: 4 SSGINPELLLSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQV 63
S +N + +L+ T TY +RD +YA+G+G +L++ Y E ++F
Sbjct: 34 SMSVNVDKILNSPEATYTATYNQRDLLMYAVGIGES--------DLQFTY-EFDEKF-SA 83
Query: 64 LPTFSALFSFELEPSGAIDLP---------GL-QHDPRLLLHGQQYMELYKPF-PSSASI 112
P + F+ + + P G+ +P ++LHG+Q +E+ +P PS ++
Sbjct: 84 FPLYPVCLPFKGQSQDVVPFPPETISAAPDGMPSFNPAMILHGEQSVEILRPLDPSGGTL 143
Query: 113 RNEACIAGLHDKGKAAILEIETK--SYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYS 170
+ + +DKGK ++E +T+ N +L+ +F+RG G+
Sbjct: 144 TGKTKVISFYDKGKGTLMETQTQFEDGNGPVAKLIS----GSFIRGLTGYEG-------- 191
Query: 171 KYQTIPVSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILH 230
K + +P V +IPK QP E T P QA VYRLSGDYN LH DP +AK+ GF +PILH
Sbjct: 192 KGRKLPARV-QIPKRQPDFNDEFKTSPHQAQVYRLSGDYNSLHIDPEIAKSVGFKQPILH 250
Query: 231 GLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWLQGL-RVIYQVKVK 289
GLC+MG A RA+ K C GD K+I RF +PGET+ T MW +G +V++Q VK
Sbjct: 251 GLCSMGVASRALFKQFCGGDVARFKSIRVRFSSPCFPGETIQTRMWQEGSGKVLFQAVVK 310
Query: 290 ERNRSALSG 298
ER + G
Sbjct: 311 ERGAVIVDG 319
>pdb|3KHP|A Chain A, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
pdb|3KHP|B Chain B, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
pdb|3KHP|C Chain C, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
pdb|3KHP|D Chain D, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
Length = 311
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 136/271 (50%), Gaps = 23/271 (8%)
Query: 22 FTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAI 81
F +T+RD +YA+GVGA D L + + QVLPT++ + + +
Sbjct: 38 FEWTDRDTLLYAIGVGAGTGD------LAFTTENSHGIDQQVLPTYAVICCPAFGAAAKV 91
Query: 82 DLPGLQHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKG--KAAILEIETKSYNA 139
+P LLHG Q + L+ P P++ + +A + DKG K AI+ + + +
Sbjct: 92 G----TFNPAALLHGSQGIRLHAPLPAAGKLSVVTEVADIQDKGEGKNAIVVLRGRGCDP 147
Query: 140 ESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQ 199
ESG L+ T LR + + P + P P A + T+ Q
Sbjct: 148 ESGSLVAETLTTLVLR-----GQGGFGGARGERPAAP----EFPDRHPDARIDMPTREDQ 198
Query: 200 ALVYRLSGDYNPLHSDPMVA-KAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIF 258
AL+YRLSGD NPLHSDP A + AGF +PILHGLCT G A RA++ + G + +I
Sbjct: 199 ALIYRLSGDRNPLHSDPWFATQLAGFPKPILHGLCTYGVAGRALVAELGGGVAANITSIA 258
Query: 259 SRFLLHVYPGETLVTEMW-LQGLRVIYQVKV 288
+RF V+PGETL T +W + R +++ +V
Sbjct: 259 ARFTKPVFPGETLSTVIWRTEPGRAVFRTEV 289
>pdb|1PN2|A Chain A, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|B Chain B, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|C Chain C, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|D Chain D, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
Length = 280
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 140/284 (49%), Gaps = 23/284 (8%)
Query: 19 EKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPS 78
+ + + +RD +Y + +GA + +LKYVY EN F QV+PTF L +F S
Sbjct: 4 DPVWRFDDRDVILYNIALGATTK------QLKYVY-ENDSDF-QVIPTFGHLITFNSGKS 55
Query: 79 GAIDLPGLQH-DPRLLLHGQQYMELYK-PFPSSASIRNEACIAGLHDKGKAAILEIETKS 136
L++ +P LLLHG+ Y++++ P P+ I+ KG ++ +KS
Sbjct: 56 QNSFAKLLRNFNPXLLLHGEHYLKVHSWPPPTEGEIKTTFEPIATTPKGTNVVIVHGSKS 115
Query: 137 YNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQ 196
+ +SGEL+ N T F+R + Y+ + PK P +
Sbjct: 116 VDNKSGELIYSNEATYFIRNCQADNKV-----YADRPAFATNQFLAPKRAPDYQVDVPVS 170
Query: 197 PSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAII-KFICRGDPNMVK 255
A +YRLSGD NPLH DP AK A F +PILHG CT G + +A+I KF G N +K
Sbjct: 171 EDLAALYRLSGDRNPLHIDPNFAKGAKFPKPILHGXCTYGLSAKALIDKF---GXFNEIK 227
Query: 256 NIFSRFLLHVYPGETLVTEMWLQG-LRVIYQVKVKERNRSALSG 298
+RF V+PGETL W + +++Q V +R A++
Sbjct: 228 ---ARFTGIVFPGETLRVLAWKESDDTIVFQTHVVDRGTIAINN 268
>pdb|1PN4|A Chain A, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|B Chain B, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|C Chain C, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|D Chain D, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa
Length = 280
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 138/284 (48%), Gaps = 23/284 (8%)
Query: 19 EKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPS 78
+ + + +RD +Y + +GA + +LKYVY EN F QV+PTF L +F S
Sbjct: 4 DPVWRFDDRDVILYNIALGATTK------QLKYVY-ENDSDF-QVIPTFGHLITFNSGKS 55
Query: 79 GAIDLPGLQH-DPRLLLHGQQYMELYK-PFPSSASIRNEACIAGLHDKGKAAILEIETKS 136
L++ +P LLLHG+ Y++++ P P+ I+ KG ++ +KS
Sbjct: 56 QNSFAKLLRNFNPMLLLHGEHYLKVHSWPPPTEGEIKTTFEPIATTPKGTNVVIVHGSKS 115
Query: 137 YNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQ 196
+ +SGEL+ N T F+R + Y+ + PK P +
Sbjct: 116 VDNKSGELIYSNEATYFIRNCQADNKV-----YADRPAFATNQFLAPKRAPDYQVDVPVS 170
Query: 197 PSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAII-KFICRGDPNMVK 255
A +YRLSGD NPL DP AK A F +PILHG+CT G + +A+I KF M
Sbjct: 171 EDLAALYRLSGDRNPLQIDPNFAKGAKFPKPILHGMCTYGLSAKALIDKF------GMFN 224
Query: 256 NIFSRFLLHVYPGETLVTEMWLQG-LRVIYQVKVKERNRSALSG 298
I +RF V+PGETL W + +++Q V +R A++
Sbjct: 225 EIKARFTGIVFPGETLRVLAWKESDDTIVFQTHVVDRGTIAINN 268
>pdb|1IQ6|A Chain A, (R)-Hydratase From A. Caviae Involved In Pha Biosynthesis
pdb|1IQ6|B Chain B, (R)-Hydratase From A. Caviae Involved In Pha Biosynthesis
Length = 134
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 205 LSGDYNPLHSDPMVAKAAGFSRPILHGLC 233
LS D+NPLH DP A F RPI+HG+
Sbjct: 29 LSEDFNPLHLDPAFAATTAFERPIVHGML 57
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Query: 187 PFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIK-F 245
P AV + YT + R+SGD NP+H A A I HG+ + +VRA+I+ +
Sbjct: 1538 PIAVLDSYTPSTNEPYARVSGDLNPIHVSRHFASYANLPGTITHGMFSSA-SVRALIENW 1596
Query: 246 ICRGDPNMVKNIFSRFLLHVYPGETLVTEM----WLQGLRVIYQVKVKERNRSALSGFVD 301
+ V+ +F+ V P L T + + G ++I E + L+G +
Sbjct: 1597 AADSVSSRVRGYTCQFVDMVLPNTALKTSIQHVGMINGRKLIKFETRNEDDVVVLTGEAE 1656
Query: 302 VHRLASSL 309
+ + ++
Sbjct: 1657 IEQPVTTF 1664
>pdb|2UVA|G Chain G, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|H Chain H, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|I Chain I, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|J Chain J, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|K Chain K, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|L Chain L, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVC|G Chain G, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|H Chain H, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|I Chain I, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|J Chain J, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|K Chain K, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|L Chain L, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 2060
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 103/230 (44%), Gaps = 32/230 (13%)
Query: 87 QHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETK------SYNAE 140
QHD LL GQ L S +N+ + + G+ +LE+ TK S + E
Sbjct: 1460 QHDIELL--GQT---LVFRLQSLVRFKNKNVYSSVQTIGQV-LLELPTKEIIQVASVDYE 1513
Query: 141 SGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQA 200
+GE N + +L+ G S+ QP ++ IP+S + + A E+Y
Sbjct: 1514 AGESHG-NPVIDYLQRHG--SSIEQPVNFE--NPIPLSGKTPLELRAPASNENYA----- 1563
Query: 201 LVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIK-FICRGDPNMVKNIFS 259
R+SGDYNP+H + + A I HG+ T AVR++++ + + V++
Sbjct: 1564 ---RVSGDYNPIHVSRVFSSYANLPGTITHGMYTSA-AVRSLVETWAAENNIGRVRSYHV 1619
Query: 260 RFLLHVYPGETLVTEMWLQGL---RVIYQV--KVKERNRSALSGFVDVHR 304
+ V P + + ++ G+ R I +V + K+ + S L G +V +
Sbjct: 1620 NMVGMVLPNDAITVKLEHVGMIAGRKIIKVDARNKDTDESVLQGEAEVEQ 1669
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 37.7 bits (86), Expect = 0.009, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 205 LSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIF---SRF 261
+SGD+NP+H+D A AG PI+HG+ A + G P + +RF
Sbjct: 1242 VSGDHNPIHTDRAAALLAGLEGPIVHGMWLSAAAQHVVTA--TDGKPVPPAKLIGWTARF 1299
Query: 262 LLHVYPGETL 271
L V PG+ +
Sbjct: 1300 LGMVKPGDQV 1309
>pdb|1Q6W|A Chain A, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|B Chain B, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|C Chain C, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|D Chain D, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|E Chain E, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|F Chain F, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|G Chain G, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|H Chain H, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|I Chain I, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|J Chain J, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|K Chain K, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
pdb|1Q6W|L Chain L, X-Ray Structure Of Monoamine Oxidase Regulatory Protein
From Archaeoglobus Fulgius
Length = 161
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 205 LSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRG-DPNMVKNIFS---- 259
L+ D+ PLH+D AK F +PI G + A+ + + I D + V F
Sbjct: 42 LTADFFPLHTDVEFAKKTIFGKPIAQGXLVLSIALGXVDQVILSNYDVSSVIAFFGIKDV 101
Query: 260 RFLLHVYPGETL 271
RFL V+ G+T+
Sbjct: 102 RFLRPVFIGDTI 113
>pdb|3IR3|A Chain A, Crystal Structure Of Human 3-Hydroxyacyl-Thioester
Dehydratase 2 (Htd2)
pdb|3IR3|B Chain B, Crystal Structure Of Human 3-Hydroxyacyl-Thioester
Dehydratase 2 (Htd2)
Length = 148
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 194 YTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNM 253
+TQ A L+GD NPLH + AK F I+HG+ G + A++ G +
Sbjct: 28 FTQTDVATFSELTGDVNPLHLNEDFAKHTKFGNTIVHGVLINGL-ISALLGTKMPGPGCV 86
Query: 254 VKNIFSRFLLHVYPGETLVTEMWLQGLR-----VIYQVKVKERNRSALSGFVDV 302
+ F +Y GE ++ ++ L+ + V E ++ + G+V V
Sbjct: 87 FLSQEISFPAPLYIGEVVLASAEVKKLKRFIAIIAVSCSVIESKKTVMEGWVKV 140
>pdb|2B3M|A Chain A, Crystal Structure Of Protein Af1124 From Archaeoglobus
Fulgidus
pdb|3K67|A Chain A, Crystal Structure Of Protein Af1124 From Archaeoglobus
Fulgidus
pdb|3K67|B Chain B, Crystal Structure Of Protein Af1124 From Archaeoglobus
Fulgidus
Length = 159
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 13/75 (17%)
Query: 184 KSQPFAVFEDYTQPSQALVYR-------------LSGDYNPLHSDPMVAKAAGFSRPILH 230
K +PF FE + Y +SGD NP+H D A F ++H
Sbjct: 25 KVKPFEKFEGELKEGYRFEYEKKLCEIDVAMFGLISGDLNPVHFDEDFASKTRFGGRVVH 84
Query: 231 GLCTMGFAVRAIIKF 245
G+ T A+ +
Sbjct: 85 GMLTTSLVSAAVARL 99
>pdb|2C2I|A Chain A, Structure And Function Of Rv0130, A Conserved Hypothetical
Protein From M.Tuberculosis
pdb|2C2I|B Chain B, Structure And Function Of Rv0130, A Conserved Hypothetical
Protein From M.Tuberculosis
Length = 151
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 195 TQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVR 240
TQ L +GD+ +H DP A A F I HG T+ R
Sbjct: 27 TQEEVNLFADATGDHQWIHVDPERAAAGPFGTTIAHGFXTLALLPR 72
>pdb|4E3E|A Chain A, Crystal Structure Of Putative Maoc Domain Protein
Dehydratase From Chloroflexus Aurantiacus J-10-Fl
pdb|4E3E|B Chain B, Crystal Structure Of Putative Maoc Domain Protein
Dehydratase From Chloroflexus Aurantiacus J-10-Fl
Length = 352
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 51/140 (36%), Gaps = 29/140 (20%)
Query: 184 KSQPFAVFEDY--------------TQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPIL 229
K+ P FED+ T+ AL L G L S A++ G R +
Sbjct: 4 KTNPGNFFEDFRLGQTIVHATPRTITEGDVALYTSLYGSRFALTSSTPFAQSLGLERAPI 63
Query: 230 HGLCTMGFAVRAIIKFICRGDPNMVKNIF---SRFLLHVYPGETLVTEMWLQGLRVIYQV 286
L + I N + N+ RF VYPG+TL T + GLR
Sbjct: 64 DSLLVFHIVFGKTVPDISL---NAIANLGYAGGRFGAVVYPGDTLSTTSKVIGLR----- 115
Query: 287 KVKERNRSALSGFVDVHRLA 306
+N+ +G V VH +
Sbjct: 116 ----QNKDGKTGVVYVHSVG 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,108,102
Number of Sequences: 62578
Number of extensions: 371250
Number of successful extensions: 693
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 656
Number of HSP's gapped (non-prelim): 17
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)