BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021702
         (309 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2NZT|A Chain A, Crystal Structure Of Human Hexokinase Ii
 pdb|2NZT|B Chain B, Crystal Structure Of Human Hexokinase Ii
          Length = 902

 Score = 30.8 bits (68), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 196 KQFFEAMSHRMHVDHSIKLI------GKLLFGIEKGPEILNTVRPAGQPLVDDWG 244
           KQ FE M   M++   ++LI       +LLFG +  PE+LNT R   + + D  G
Sbjct: 276 KQLFEKMISGMYMGELVRLILVKMAKEELLFGGKLSPELLNTGRFETKDISDIEG 330


>pdb|1S4N|A Chain A, Crystal Structure Of Yeast Alpha1,2-Mannosyltransferase
           Kre2pMNT1P
 pdb|1S4N|B Chain B, Crystal Structure Of Yeast Alpha1,2-Mannosyltransferase
           Kre2pMNT1P
 pdb|1S4O|A Chain A, Crystal Structure Of Yeast Alpha1,2-mannosyltransferase
           Kre2p/mnt1p: Binary Complex With Gdp/mn
 pdb|1S4O|B Chain B, Crystal Structure Of Yeast Alpha1,2-mannosyltransferase
           Kre2p/mnt1p: Binary Complex With Gdp/mn
 pdb|1S4P|A Chain A, Crystal Structure Of Yeast Alpha1,2-Mannosyltransferase
           Kre2pMNT1P: Ternary Complex With GdpMN AND
           METHYL-Alpha-Mannoside Acceptor
 pdb|1S4P|B Chain B, Crystal Structure Of Yeast Alpha1,2-Mannosyltransferase
           Kre2pMNT1P: Ternary Complex With GdpMN AND
           METHYL-Alpha-Mannoside Acceptor
          Length = 348

 Score = 27.7 bits (60), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 151 NYTFVDENSLRPASKAVNQRDADLLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHR 205
           N  ++DEN+L       N +  +L HFW  +  A     R + A +++F+ + H+
Sbjct: 204 NPEYLDENNLMSFLSNDNGKTYNLCHFWSNFEIANLNLWR-SPAYREYFDTLDHQ 257


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,045,554
Number of Sequences: 62578
Number of extensions: 439062
Number of successful extensions: 924
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 924
Number of HSP's gapped (non-prelim): 4
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)