Query 021702
Match_columns 309
No_of_seqs 138 out of 299
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:01:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021702.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021702hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1348 Asparaginyl peptidases 100.0 3E-101 6E-106 725.1 24.0 306 1-308 172-477 (477)
2 PF01650 Peptidase_C13: Peptid 100.0 2E-38 4.4E-43 294.4 10.5 133 1-145 124-256 (256)
3 KOG1349 Gpi-anchor transamidas 99.9 5.4E-24 1.2E-28 194.0 5.8 132 2-147 157-292 (309)
4 COG5206 GPI8 Glycosylphosphati 99.8 1.7E-19 3.6E-24 165.8 6.0 130 3-146 158-291 (382)
5 PF00656 Peptidase_C14: Caspas 92.8 0.18 3.8E-06 45.3 5.0 92 12-117 103-230 (248)
6 PF12554 MOZART1: Mitotic-spin 55.7 18 0.00039 25.5 3.4 26 265-290 21-46 (48)
7 KOG1655 Protein involved in va 33.2 1.1E+02 0.0023 28.0 5.5 54 167-221 35-88 (218)
8 PF07999 RHSP: Retrotransposon 28.4 2.4E+02 0.0052 28.7 7.8 100 9-118 188-299 (439)
9 smart00115 CASc Caspase, inter 26.3 1.7E+02 0.0036 26.8 5.9 30 87-117 184-213 (241)
10 PF10116 Host_attach: Protein 25.4 89 0.0019 26.0 3.5 32 8-39 74-105 (138)
11 PF06866 DUF1256: Protein of u 22.6 1.2E+02 0.0026 26.8 3.8 32 5-37 66-97 (163)
12 KOG1735 Actin depolymerizing f 21.9 90 0.002 27.0 2.9 27 9-35 8-34 (146)
13 PF09340 NuA4: Histone acetylt 20.1 1.3E+02 0.0029 23.1 3.3 48 196-246 2-49 (80)
No 1
>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-101 Score=725.07 Aligned_cols=306 Identities=61% Similarity=1.059 Sum_probs=295.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCeeEEEEeeccccccccCCCCCCCcEEEEccCCCCCcccccCCCCCCCCCCCccc
Q 021702 1 MPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYS 80 (309)
Q Consensus 1 ~P~~~~l~a~dL~~~l~~M~~~~~Y~~lvfyiEaC~SgSmf~~~lp~~~nIya~TAan~~EsS~a~yc~~~~~~~~~~~~ 80 (309)
||+++.|||+||+++|++||+.|+|++||||||||||||||||+||+|+|||||||||+.|||||+|||+++|.||+++.
T Consensus 172 mP~~~~l~akdlnevL~kmhk~k~Y~~mvfYlEACESGSmfegiLp~~lnIYatTAaNa~ESSwgtycp~~~psppse~~ 251 (477)
T KOG1348|consen 172 MPTSPDLYAKDLNEVLKKMHKSKTYKKMVFYLEACESGSMFEGILPKNLNIYATTAANARESSWGTYCPGEYPSPPSEYS 251 (477)
T ss_pred cCCCcchhHHHHHHHHHHHHhccchheEEEEeeeccCcchhhhhccCCCcEEEeecCCccccccceeCCCCCCCChhhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhcccccccccccccHHHHHHHHHhhhccCCCCCCCceeecCCccccccchhhcccCCCCCCCcccCCCCC
Q 021702 81 TCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSL 160 (309)
Q Consensus 81 tcLgD~fs~~wme~~d~~~~~~~Tl~~~f~~v~~~t~~~~~~~Shv~~yGd~~~~~~~l~~f~g~~~~~~~~~~~~~~~~ 160 (309)
|||||+|||+||||+|.||+++|||.+||+.||++|+.....+||||||||..|+++.|..|||.+|+++++++. +.+.
T Consensus 252 tcLGDlySV~WmeDSd~hdL~kETL~qQYhlVK~rt~~s~s~gsHVmqyGd~~iske~l~lfqG~~pa~~nf~l~-~~s~ 330 (477)
T KOG1348|consen 252 TCLGDLYSVNWMEDSDVHDLKKETLHQQYHLVKKRTNTSYSYGSHVMQYGDKTISKEKLMLFQGMKPANENFTLP-ASSH 330 (477)
T ss_pred cccccceeeeeeccCccccchHHHHHHHHHHHHHhcCCCCCCcceeeecCcchhhHHHHHHHcCCCcccCCCCCC-ccCc
Confidence 999999999999999999999999999999999999976668889999999999999999999999999998865 4445
Q ss_pred CcccccccccchhHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccccccccCCCCCCCc
Q 021702 161 RPASKAVNQRDADLLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLV 240 (309)
Q Consensus 161 ~~~~~~v~srDa~L~~L~~k~~~a~~~~~~k~~a~~el~~~l~~R~~id~~v~~I~~~l~g~~~~~~~l~~~~~~g~~l~ 240 (309)
.+++..|||||+||+|||+|++++++++.++.+++++|.+++.+|++||++|..|+.++||. .++.+|+.+|+.|+|++
T Consensus 331 ~~~s~~~n~rD~~L~~l~~k~rka~dgs~~s~e~~k~i~~~~~hR~~id~sV~~I~~llf~~-~~~~~l~~vr~~g~Plv 409 (477)
T KOG1348|consen 331 KSPSGLTNQRDAPLLHLWRKYRKANDGSAESRELQKEILRHKDHRKHIDKSVRLIVSLLFGS-EGEAVLNQVRSEGQPLV 409 (477)
T ss_pred CCccccCCCCCccHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chHHHHHHhhcCCCCcc
Confidence 56778999999999999999999999998999999999999999999999999999999997 55779999999999999
Q ss_pred CccchHHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCCHHHHHHHHHhhhcCCCCCCCCCcccCCC
Q 021702 241 DDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFS 308 (309)
Q Consensus 241 ~d~dCyk~~V~~Fe~~Cg~l~eY~lk~~~~laNLC~~g~~~~~i~~Ai~~~C~~~~~~~~~~~~~~~~ 308 (309)
+||+|++.+|++|++|||+++||||||+|+|+||||.|++.++|..|+.++|..++..+|+++..|||
T Consensus 410 ddw~C~k~~v~~F~~hCg~~~~YglKh~~~~aN~Cn~g~~~e~~~~A~~~aC~~~~~~~~~~~~~gfs 477 (477)
T KOG1348|consen 410 DDWDCLKSAVRHFETHCGSTYEYGLKHMRVLANMCNKGVPLEQIELAMDQACLGIYTEPWSSLRRGFS 477 (477)
T ss_pred chHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhHhcCCccccchhhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999997
No 2
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=100.00 E-value=2e-38 Score=294.43 Aligned_cols=133 Identities=50% Similarity=0.806 Sum_probs=127.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCeeEEEEeeccccccccCCCCCCCcEEEEccCCCCCcccccCCCCCCCCCCCccc
Q 021702 1 MPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYS 80 (309)
Q Consensus 1 ~P~~~~l~a~dL~~~l~~M~~~~~Y~~lvfyiEaC~SgSmf~~~lp~~~nIya~TAan~~EsS~a~yc~~~~~~~~~~~~ 80 (309)
||+.+.|++.||+++|++|+++++|||||||||||+|||||++ |++++|||++|||+++|+|||+||+ +++++
T Consensus 124 ~~~~~~l~~~~L~~~L~~m~~~~~y~~lv~~veaC~SGs~~~~-L~~~~nv~~iTAa~~~e~Sy~~~~~------~~~~~ 196 (256)
T PF01650_consen 124 FPDGEELTADDLADALDKMHEKKRYKKLVFVVEACYSGSFFEG-LLKSPNVYVITAANADESSYGCYCS------DDSIG 196 (256)
T ss_pred CCCcccccHHHHHHHHHHHHhhCCcceEEEEEecccccchhhc-cCCCCCEEEEecCCccccccccccc------ccccc
Confidence 6878899999999999999999999999999999999999999 7889999999999999999999993 39999
Q ss_pred ccccchhhhhhcccccccccccccHHHHHHHHHhhhccCCCCCCCceeecCCccccccchhhccc
Q 021702 81 TCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGT 145 (309)
Q Consensus 81 tcLgD~fs~~wme~~d~~~~~~~Tl~~~f~~v~~~t~~~~~~~Shv~~yGd~~~~~~~l~~f~g~ 145 (309)
+||||+||++||++++.++++.+||.+||+.|+++|. +|||++|||.++.+++|++|+|.
T Consensus 197 ~~l~d~fs~~~m~~~~~~~~~~~Tl~~~f~~v~~~~~-----~shv~~~gd~s~~~~~v~~f~g~ 256 (256)
T PF01650_consen 197 TYLGDAFSYNWMEDSDSHPLSEETLDDQFEYVKRKTT-----GSHVQQYGDPSIPQLPVSEFQGT 256 (256)
T ss_pred cEeHHHHHHHhhhhhccCCccccCHHHHHHHHHHhcc-----cchHHhcCCCCccccCHHHhcCC
Confidence 9999999999999999888999999999999999998 99999999999999999999994
No 3
>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.4e-24 Score=194.01 Aligned_cols=132 Identities=17% Similarity=0.306 Sum_probs=119.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCeeEEEEeeccccccccCCCCCCCcEEEEccCCCCCcccccCCCCCCCCCCCcccc
Q 021702 2 PTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYST 81 (309)
Q Consensus 2 P~~~~l~a~dL~~~l~~M~~~~~Y~~lvfyiEaC~SgSmf~~~lp~~~nIya~TAan~~EsS~a~yc~~~~~~~~~~~~t 81 (309)
-+.++|+.+||+++|+|||+++||+||+|+|++|++.|||+.+.. |||+|+.+|..+|+||+++.| ++||+
T Consensus 157 qd~eelts~dLadai~qm~e~~Ryneil~miDTCQaasly~~~~s--PNVLav~SS~~ge~SySh~~d-------~~Igv 227 (309)
T KOG1349|consen 157 QDAEELTSDDLADAIQQMWEKKRYNEILFMIDTCQAASLYERFYS--PNVLAVASSLVGEPSYSHHSD-------SDIGV 227 (309)
T ss_pred ccHHHhhhHHHHHHHHHHHHhhhhceEEEEeeccchHHHHHhhcC--CCeEEEeecccCCcccccCCC-------cccce
Confidence 356789999999999999999999999999999999999999754 699999999999999999998 89999
Q ss_pred cccchhhhhhccccccc-ccccccHHHHHHHHHhhhccCCCCCCCceeecCC---ccccccchhhcccCC
Q 021702 82 CLGDLYSIAWMEDSDIH-NLRTETLHQQYELVKTRTASYNSYGSHVMQYGDI---GLSKNNLFTYLGTNP 147 (309)
Q Consensus 82 cLgD~fs~~wme~~d~~-~~~~~Tl~~~f~~v~~~t~~~~~~~Shv~~yGd~---~~~~~~l~~f~g~~~ 147 (309)
.+.|+|++..+++.++. +....||+++|+.+.++.+ +||+....|+ ...+.++++|||...
T Consensus 228 ~vIDrftyy~l~flek~~~~~~~~l~dl~~s~~~~~~-----~St~gvr~dl~~r~~~~v~itDFFg~vr 292 (309)
T KOG1349|consen 228 YVIDRFTYYTLEFLEKGIGAKNRTLQDLFDSCPKRLL-----GSTPGVRTDLYQRDPKDVLITDFFGSVR 292 (309)
T ss_pred eeeccchHHHHHHHHhcccchhhhHHHHHHhCChhhh-----cCCcCcccccccCCcccceeeeecccce
Confidence 99999999999999874 4455689999999999998 9999887775 677899999999743
No 4
>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.7e-19 Score=165.80 Aligned_cols=130 Identities=15% Similarity=0.228 Sum_probs=114.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCeeEEEEeeccccccccCCCCCCCcEEEEccCCCCCcccccCCCCCCCCCCCccccc
Q 021702 3 TSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTC 82 (309)
Q Consensus 3 ~~~~l~a~dL~~~l~~M~~~~~Y~~lvfyiEaC~SgSmf~~~lp~~~nIya~TAan~~EsS~a~yc~~~~~~~~~~~~tc 82 (309)
+-++++.+||+++|++||++|||+|++|+|++|++.+|+..++. |||+|+++|.-++|||+++.| .+||+-
T Consensus 158 daeemtseDladai~ql~~~kRyNeIlfmiDTCQAnaly~k~ys--PNvLavgsSeig~ssyShhsd-------~~Igva 228 (382)
T COG5206 158 DAEEMTSEDLADAISQLAAKKRYNEILFMIDTCQANALYDKSYS--PNVLAVGSSEIGQSSYSHHSD-------SLIGVA 228 (382)
T ss_pred cHHHhhhHHHHHHHHHHHHhhhhceEEEEeeccccchhhhhccC--CceEEEeccccCCccccccch-------hhhhHH
Confidence 45689999999999999999999999999999999999998765 599999999999999999998 899999
Q ss_pred ccchhhhhhcccccc-cccccccHHHHHHHHHhhhccCCCCCCCceeec---CCccccccchhhcccC
Q 021702 83 LGDLYSIAWMEDSDI-HNLRTETLHQQYELVKTRTASYNSYGSHVMQYG---DIGLSKNNLFTYLGTN 146 (309)
Q Consensus 83 LgD~fs~~wme~~d~-~~~~~~Tl~~~f~~v~~~t~~~~~~~Shv~~yG---d~~~~~~~l~~f~g~~ 146 (309)
+.|+|++.++++.++ ...++.||++++........ +|||...- |.+.++..+++|||+.
T Consensus 229 VIDrFty~~l~fle~id~~skltlqDL~~s~n~e~i-----hS~~gv~~~~fdr~p~d~litDFF~nV 291 (382)
T COG5206 229 VIDRFTYFFLKFLEKIDIGSKLTLQDLLASLNKEPI-----HSHVGVRELVFDRRPSDFLITDFFANV 291 (382)
T ss_pred HhhcchHHHHHHHhhcCcCCeeEHHHHHHhcCcccc-----cCCCCcccccccCCccceeehHhhhhh
Confidence 999999999888876 34679999999999988876 99997543 3455667789999864
No 5
>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A ....
Probab=92.84 E-value=0.18 Score=45.29 Aligned_cols=92 Identities=25% Similarity=0.369 Sum_probs=64.4
Q ss_pred HHHHHHHHHHcC-CCC-eeEEEEeeccccccccCCC----------------------------CCCCcEEEEccCCCCC
Q 021702 12 LIDVLKKKHASG-NYK-SLVFYLEACESGSIFEGLL----------------------------PEGLNIYATTASNAEE 61 (309)
Q Consensus 12 L~~~l~~M~~~~-~Y~-~lvfyiEaC~SgSmf~~~l----------------------------p~~~nIya~TAan~~E 61 (309)
+.+.|..+..+. .=+ + ||++++|+||.+..+.. +...+++.++|+.++|
T Consensus 103 ~~~~l~~~~~~~~~~~~k-~~ilD~C~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~~~~ 181 (248)
T PF00656_consen 103 LDDELRDLLCKSLPKKPK-LFILDCCRSGGFIDGLSSSSGESSKREERKLSSSIPPEDPNRSDVPSPSGFIVLSASRPGQ 181 (248)
T ss_dssp HHHHTSTTTTGGGTTS-E-EEEEESESSSBTBCEEEEEESSSTSS-EECHCCCCCCSSCCSEEEETTTSEEEEESSSTTB
T ss_pred HHHHHhhhhhhhccCCcc-EEeeccccCCccCCccccccccccccccccccccccccccccccccCCCCcEEEEeccccc
Confidence 455555555541 112 4 99999999999877311 1345899999999999
Q ss_pred cccccCCCCCCCCCCCcccccccchhhhhhccccccc------ccccccHHHHHHHHHhhhc
Q 021702 62 SSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIH------NLRTETLHQQYELVKTRTA 117 (309)
Q Consensus 62 sS~a~yc~~~~~~~~~~~~tcLgD~fs~~wme~~d~~------~~~~~Tl~~~f~~v~~~t~ 117 (309)
.||.. + ..=+-+|+.++++-+... .....+|.+++..|++++.
T Consensus 182 ~s~e~--~-----------~~~~g~ft~~L~~~L~~~~~~~~~~~~~~~l~~~~~~v~~~~~ 230 (248)
T PF00656_consen 182 TSYED--S-----------PGSGGLFTYALLEALKGNAADDPNQSWDELLEELLTEVNQKVA 230 (248)
T ss_dssp CEEEE--C-----------TTTEEHHHHHHHHHHHHHTTTSTTCCTTSBHHHHHHHHHHHHH
T ss_pred eeecc--c-----------CccCHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHhHCC
Confidence 99887 2 233446899988877432 2336899999999998873
No 6
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=55.73 E-value=18 Score=25.46 Aligned_cols=26 Identities=15% Similarity=0.409 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHcCCCCHHHHHHHHHh
Q 021702 265 MKHMRSLANICNTGIGKEKMAEASAQ 290 (309)
Q Consensus 265 lk~~~~laNLC~~g~~~~~i~~Ai~~ 290 (309)
..-+....+||+.|+.++..+..|..
T Consensus 21 ~etL~ici~L~e~GVnPeaLA~vI~e 46 (48)
T PF12554_consen 21 RETLSICIELCENGVNPEALAAVIKE 46 (48)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 35678999999999999988887764
No 7
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.24 E-value=1.1e+02 Score=28.02 Aligned_cols=54 Identities=13% Similarity=0.314 Sum_probs=42.2
Q ss_pred ccccchhHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 021702 167 VNQRDADLLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFG 221 (309)
Q Consensus 167 v~srDa~L~~L~~k~~~a~~~~~~k~~a~~el~~~l~~R~~id~~v~~I~~~l~g 221 (309)
+..-|++|.-++.++++...|. .+..+.++-.++|+.++..+.--..+..--|+
T Consensus 35 IskLDaeL~k~~~Qi~k~R~gp-aq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfN 88 (218)
T KOG1655|consen 35 ISKLDAELCKYKDQIKKTRPGP-AQNALKQRALRVLKQKKMYENQKDSLDQQSFN 88 (218)
T ss_pred HHHHHHHHHHHHHHHHhcCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4456899999999999998887 78888888889999988877755555444444
No 8
>PF07999 RHSP: Retrotransposon hot spot protein; InterPro: IPR006518 These sequences are full-length and part-length members of the RHS (retrotransposon hot spot) family in Trypanosoma brucei and Trypanosoma cruzi. Members of this family are frequently interrupted by non-LTR retrotransposons inserted at exactly the same relative position.
Probab=28.37 E-value=2.4e+02 Score=28.68 Aligned_cols=100 Identities=16% Similarity=0.275 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHcCCCCeeEEEEeeccccc-cccCCCCCCCcEEEEccCCCCCcccccCCCCCCCCCCCcccccccchh
Q 021702 9 ADELIDVLKKKHASGNYKSLVFYLEACESGS-IFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLY 87 (309)
Q Consensus 9 a~dL~~~l~~M~~~~~Y~~lvfyiEaC~SgS-mf~~~lp~~~nIya~TAan~~EsS~a~yc~~~~~~~~~~~~tcLgD~f 87 (309)
..+-.++++.|...++ +=.++.+.|..|. ....++|..++++++|| |.|+.|........ . . .-..+.+
T Consensus 188 ~~~a~~~i~~~~~~g~--~GyiI~Dv~~~~~~p~~~~~~~~Wg~ivlss--P~~~~~~~w~k~~~-~--~---~I~iNC~ 257 (439)
T PF07999_consen 188 QEAAVSVINEMSSRGV--KGYIIYDVAKKGHQPSPELPPRGWGMIVLSS--PNESNFEEWSKQRG-A--L---PIYINCY 257 (439)
T ss_pred chHHHHHHHHHHhhCc--eEEEEEecccccCccCCCcccCCCCEEEEcC--CChhhcccccccCC-c--e---eEEeeCC
Confidence 5678899999988665 5678889999983 33456899999999998 66677777664211 0 1 1133334
Q ss_pred h-------hhhccccccc----ccccccHHHHHHHHHhhhcc
Q 021702 88 S-------IAWMEDSDIH----NLRTETLHQQYELVKTRTAS 118 (309)
Q Consensus 88 s-------~~wme~~d~~----~~~~~Tl~~~f~~v~~~t~~ 118 (309)
. +.||...... ....+.|.+..+.|+.|...
T Consensus 258 d~~e~KA~~aW~r~~~~~~~~~~~a~~~~e~~W~~Ve~RI~~ 299 (439)
T PF07999_consen 258 DEREVKAMCAWMRRSQLAEEQPEQAEVELENYWKEVEERIDE 299 (439)
T ss_pred cHHHHHHHHHHHHhchhhcccchhhhhHHHHHHHHHHHHHHH
Confidence 3 3599776541 11235677889999998764
No 9
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=26.30 E-value=1.7e+02 Score=26.83 Aligned_cols=30 Identities=13% Similarity=0.032 Sum_probs=20.8
Q ss_pred hhhhhcccccccccccccHHHHHHHHHhhhc
Q 021702 87 YSIAWMEDSDIHNLRTETLHQQYELVKTRTA 117 (309)
Q Consensus 87 fs~~wme~~d~~~~~~~Tl~~~f~~v~~~t~ 117 (309)
|.-+.++.+..+ .+.+.|.++|..|.+++.
T Consensus 184 fi~~L~~~l~~~-~~~~~l~~ilt~V~~~V~ 213 (241)
T smart00115 184 FIQSLCQVLKEY-ARSLDLLDILTEVNRKVA 213 (241)
T ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHHHHHh
Confidence 554545444432 366789999999999986
No 10
>PF10116 Host_attach: Protein required for attachment to host cells; InterPro: IPR019291 Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells [, ].
Probab=25.42 E-value=89 Score=25.97 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHcCCCCeeEEEEeeccccc
Q 021702 8 YADELIDVLKKKHASGNYKSLVFYLEACESGS 39 (309)
Q Consensus 8 ~a~dL~~~l~~M~~~~~Y~~lvfyiEaC~SgS 39 (309)
.+.+|++.|.+...++.|.+||++-+.=.=|-
T Consensus 74 Fa~~vA~~L~~~~~~~~~~~LvlvA~p~~LG~ 105 (138)
T PF10116_consen 74 FAREVADRLEKARRAGKFDRLVLVAPPRFLGL 105 (138)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEECHHHHHH
Confidence 47899999999999999999999876543333
No 11
>PF06866 DUF1256: Protein of unknown function (DUF1256); InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown.
Probab=22.56 E-value=1.2e+02 Score=26.77 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCeeEEEEeeccc
Q 021702 5 RYIYADELIDVLKKKHASGNYKSLVFYLEACES 37 (309)
Q Consensus 5 ~~l~a~dL~~~l~~M~~~~~Y~~lvfyiEaC~S 37 (309)
+.++|..|.++|++-+++.. +..++-|+||-.
T Consensus 66 ~PVHA~NL~e~l~~I~~~~~-~~~IIAIDAcLG 97 (163)
T PF06866_consen 66 EPVHALNLEETLNEIKKKHP-NPFIIAIDACLG 97 (163)
T ss_pred CCcchhhHHHHHHHHHHHCC-CCeEEEEECCCC
Confidence 57999999999999887433 667999999965
No 12
>KOG1735 consensus Actin depolymerizing factor [Cytoskeleton]
Probab=21.89 E-value=90 Score=27.04 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHcCCCCeeEEEEeec
Q 021702 9 ADELIDVLKKKHASGNYKSLVFYLEAC 35 (309)
Q Consensus 9 a~dL~~~l~~M~~~~~Y~~lvfyiEaC 35 (309)
+++-..+|..|+.+|+|+-.||.|+.=
T Consensus 8 sde~~~~F~elk~kk~~r~ivF~i~~~ 34 (146)
T KOG1735|consen 8 SDECKKVFNELKVKKRKRYVVFKISED 34 (146)
T ss_pred cHHHHHHHHHHHhhcceeEEEEEeccc
Confidence 567789999999999999999999874
No 13
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=20.06 E-value=1.3e+02 Score=23.08 Aligned_cols=48 Identities=15% Similarity=0.357 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCccccccccCCCCCCCcCccchH
Q 021702 196 KQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCL 246 (309)
Q Consensus 196 ~el~~~l~~R~~id~~v~~I~~~l~g~~~~~~~l~~~~~~g~~l~~d~dCy 246 (309)
++|.+.+++|+.++..+..|-.-++..+. .-|....+.|.. +.-||=|
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qIy~~Et--~YL~~~~~~GNi-ikGfd~y 49 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQIYDKET--SYLEDTSPYGNI-IKGFDGY 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHccCcCCCC-eeChhhh
Confidence 56788889999998888888666554332 123333444543 4556554
Done!