Query 021703
Match_columns 309
No_of_seqs 203 out of 1256
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 05:01:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2332 Ferritin [Inorganic io 100.0 5.4E-47 1.2E-51 335.6 13.6 162 81-246 3-167 (178)
2 PRK15022 ferritin-like protein 100.0 1.4E-42 3.1E-47 305.9 20.5 161 90-259 1-162 (167)
3 cd00904 Ferritin Ferritin iron 100.0 2.5E-41 5.4E-46 293.9 19.4 147 92-243 1-148 (160)
4 PRK10304 ferritin; Provisional 100.0 7E-41 1.5E-45 294.1 19.4 149 90-246 1-150 (165)
5 COG1528 Ftn Ferritin-like prot 100.0 5E-39 1.1E-43 282.1 20.2 160 90-258 1-161 (167)
6 cd01056 Euk_Ferritin eukaryoti 100.0 2.1E-38 4.5E-43 275.0 19.2 158 92-257 1-159 (161)
7 cd01055 Nonheme_Ferritin nonhe 100.0 3.7E-35 8.1E-40 251.0 19.3 147 92-246 1-148 (156)
8 PRK10635 bacterioferritin; Pro 100.0 3.6E-27 7.9E-32 206.0 19.2 145 90-243 2-146 (158)
9 TIGR00754 bfr bacterioferritin 99.9 3.1E-26 6.6E-31 197.7 19.3 143 91-242 3-145 (157)
10 PF00210 Ferritin: Ferritin-li 99.9 8.8E-25 1.9E-29 179.7 17.1 137 96-241 1-142 (142)
11 cd00907 Bacterioferritin Bacte 99.9 3.4E-24 7.3E-29 182.0 19.0 143 92-243 3-145 (153)
12 cd01041 Rubrerythrin Rubreryth 99.9 2.2E-21 4.8E-26 163.4 16.0 131 95-238 2-133 (134)
13 cd01052 DPSL DPS-like protein, 99.9 1E-20 2.3E-25 159.8 17.5 138 92-235 4-148 (148)
14 COG2193 Bfr Bacterioferritin ( 99.9 2.8E-20 6.2E-25 160.9 17.5 145 90-243 2-146 (157)
15 cd01046 Rubrerythrin_like rubr 99.8 1.2E-17 2.7E-22 139.7 15.8 120 95-237 2-121 (123)
16 PRK13456 DNA protection protei 99.7 4.4E-15 9.4E-20 133.2 18.2 141 92-236 18-163 (186)
17 cd01043 DPS DPS protein, ferri 99.3 6.7E-11 1.5E-15 99.7 14.4 129 98-234 2-138 (139)
18 cd00657 Ferritin_like Ferritin 99.3 1.9E-10 4.2E-15 89.5 15.1 123 98-234 2-129 (130)
19 cd07908 Mn_catalase_like Manga 99.2 6.6E-10 1.4E-14 95.4 17.3 136 92-234 11-153 (154)
20 cd01045 Ferritin_like_AB Uncha 98.9 2.3E-08 5E-13 81.4 13.3 129 97-234 1-138 (139)
21 cd01051 Mn_catalase Manganese 98.9 8.3E-08 1.8E-12 84.1 17.5 135 92-238 18-155 (156)
22 PF02915 Rubrerythrin: Rubrery 98.7 5.1E-07 1.1E-11 73.6 13.9 129 97-234 1-136 (137)
23 PRK09448 DNA starvation/statio 98.5 6.8E-06 1.5E-10 72.4 16.9 131 93-235 21-160 (162)
24 COG2406 Protein distantly rela 98.4 1.8E-05 3.9E-10 69.3 16.4 140 93-236 16-160 (172)
25 cd01044 Ferritin_CCC1_N Ferrit 98.3 1.3E-05 2.7E-10 67.0 11.2 121 98-236 2-124 (125)
26 COG1633 Uncharacterized conser 98.2 0.00012 2.6E-09 65.5 17.6 141 91-242 21-173 (176)
27 COG0783 Dps DNA-binding ferrit 98.1 0.00027 5.8E-09 62.4 16.6 133 93-234 14-154 (156)
28 PRK12775 putative trifunctiona 97.9 0.00041 8.9E-09 76.4 17.4 139 93-241 859-1001(1006)
29 PF13668 Ferritin_2: Ferritin- 97.7 0.0045 9.8E-08 51.9 16.6 131 96-236 3-136 (137)
30 COG1592 Rubrerythrin [Energy p 97.6 0.0024 5.3E-08 57.0 14.1 125 94-238 4-129 (166)
31 cd01042 DMQH Demethoxyubiquino 97.2 0.011 2.4E-07 52.6 13.8 123 104-233 10-136 (165)
32 TIGR02284 conserved hypothetic 96.5 0.12 2.6E-06 44.4 13.6 127 96-237 2-137 (139)
33 PF03232 COQ7: Ubiquinone bios 96.2 0.25 5.3E-06 44.4 14.9 131 96-232 4-141 (172)
34 cd01048 Ferritin_like_AB2 Unch 96.1 0.38 8.2E-06 41.0 14.9 121 97-231 3-131 (135)
35 cd01050 Acyl_ACP_Desat Acyl AC 96.1 0.43 9.3E-06 46.3 16.6 150 90-243 55-210 (297)
36 PF03405 FA_desaturase_2: Fatt 95.6 1.1 2.3E-05 44.3 17.3 148 89-239 56-212 (330)
37 PF09537 DUF2383: Domain of un 94.9 0.23 5.1E-06 40.2 8.9 63 94-161 1-63 (111)
38 cd07910 MiaE MiaE tRNA-modifyi 93.2 6.4 0.00014 35.8 16.8 131 94-243 18-160 (180)
39 PF04305 DUF455: Protein of un 92.4 1.4 2.9E-05 42.0 10.5 143 93-240 65-210 (253)
40 PF05974 DUF892: Domain of unk 92.4 7 0.00015 34.2 16.0 137 93-237 4-152 (159)
41 PF05067 Mn_catalase: Manganes 92.2 2.5 5.5E-05 40.9 12.1 143 92-242 18-198 (283)
42 cd01052 DPSL DPS-like protein, 89.5 2.9 6.2E-05 35.0 8.8 62 178-240 6-67 (148)
43 COG2941 CAT5 Ubiquinone biosyn 89.3 17 0.00037 33.6 13.9 121 104-232 51-175 (204)
44 COG1633 Uncharacterized conser 89.1 2.5 5.4E-05 38.0 8.5 61 177-241 23-83 (176)
45 PF02915 Rubrerythrin: Rubrery 88.9 2.2 4.9E-05 34.3 7.4 56 181-238 1-56 (137)
46 cd00907 Bacterioferritin Bacte 87.8 4.1 8.8E-05 34.3 8.6 61 178-239 5-65 (153)
47 cd01045 Ferritin_like_AB Uncha 87.6 3 6.5E-05 33.4 7.4 54 182-239 2-55 (139)
48 COG3546 Mn-containing catalase 87.4 9 0.00019 36.9 11.4 143 92-243 18-194 (277)
49 PF00210 Ferritin: Ferritin-li 86.7 4.4 9.4E-05 32.8 8.0 58 181-239 2-59 (142)
50 cd01041 Rubrerythrin Rubreryth 85.2 8.1 0.00018 32.3 9.0 60 93-154 72-132 (134)
51 PF12902 Ferritin-like: Ferrit 83.2 6 0.00013 36.9 8.1 62 99-162 1-62 (227)
52 cd01046 Rubrerythrin_like rubr 82.8 8.5 0.00018 32.1 8.1 57 179-236 2-58 (123)
53 PLN00179 acyl- [acyl-carrier p 80.7 11 0.00023 38.2 9.2 146 91-240 115-270 (390)
54 cd00657 Ferritin_like Ferritin 79.8 13 0.00029 28.0 7.8 53 182-238 2-54 (130)
55 cd07909 YciF YciF bacterial st 78.3 46 0.001 29.1 15.1 129 96-233 5-145 (147)
56 PF09537 DUF2383: Domain of un 77.8 17 0.00037 29.2 8.1 78 179-260 2-80 (111)
57 cd07908 Mn_catalase_like Manga 77.2 13 0.00027 31.7 7.6 56 91-151 98-153 (154)
58 cd01055 Nonheme_Ferritin nonhe 75.1 16 0.00034 31.0 7.6 60 93-154 79-138 (156)
59 PF14530 DUF4439: Domain of un 72.2 63 0.0014 27.8 15.8 114 98-226 1-115 (131)
60 PF13668 Ferritin_2: Ferritin- 71.8 21 0.00046 29.6 7.5 56 180-236 3-63 (137)
61 PF07875 Coat_F: Coat F domain 67.9 46 0.001 24.5 8.5 56 97-157 4-59 (64)
62 PRK12775 putative trifunctiona 67.8 22 0.00048 39.9 8.5 57 177-237 859-915 (1006)
63 cd07649 F-BAR_GAS7 The F-BAR ( 67.1 1.1E+02 0.0023 28.7 11.7 96 126-241 20-115 (233)
64 cd07651 F-BAR_PombeCdc15_like 66.2 93 0.002 28.5 11.1 32 126-157 20-51 (236)
65 COG2833 Uncharacterized protei 63.3 1.3E+02 0.0028 28.9 11.4 122 91-230 72-208 (268)
66 cd07647 F-BAR_PSTPIP The F-BAR 60.3 1.1E+02 0.0024 28.2 10.5 29 126-154 20-48 (239)
67 PF06175 MiaE: tRNA-(MS[2]IO[6 58.4 1.7E+02 0.0038 27.9 16.9 138 92-242 25-210 (240)
68 cd07673 F-BAR_FCHO2 The F-BAR 55.9 1.7E+02 0.0036 27.9 11.1 31 126-156 27-57 (269)
69 cd07658 F-BAR_NOSTRIN The F-BA 53.7 1.2E+02 0.0027 28.1 9.7 96 126-239 20-115 (239)
70 PRK10635 bacterioferritin; Pro 52.8 88 0.0019 27.4 8.1 62 90-153 78-139 (158)
71 PF05974 DUF892: Domain of unk 52.4 99 0.0022 26.9 8.3 57 179-239 6-62 (159)
72 cd07610 FCH_F-BAR The Extended 51.1 1.6E+02 0.0035 25.4 11.1 34 126-159 15-48 (191)
73 KOG4061 DMQ mono-oxygenase/Ubi 49.8 1.4E+02 0.003 27.7 8.9 116 104-229 58-183 (217)
74 cd07653 F-BAR_CIP4-like The F- 47.9 2.2E+02 0.0048 26.0 12.5 34 126-159 20-53 (251)
75 cd01051 Mn_catalase Manganese 47.8 1.4E+02 0.003 26.2 8.5 61 90-155 95-155 (156)
76 cd07909 YciF YciF bacterial st 47.1 1.4E+02 0.0031 26.1 8.4 56 179-238 4-59 (147)
77 cd01056 Euk_Ferritin eukaryoti 47.0 1.4E+02 0.0031 25.6 8.4 60 178-238 3-64 (161)
78 PF07875 Coat_F: Coat F domain 46.8 1.1E+02 0.0025 22.3 8.6 54 180-237 3-56 (64)
79 cd07671 F-BAR_PSTPIP1 The F-BA 46.2 2.6E+02 0.0055 26.3 11.4 92 127-240 21-113 (242)
80 PRK10304 ferritin; Provisional 45.4 1.5E+02 0.0033 26.1 8.4 61 178-239 5-65 (165)
81 cd01048 Ferritin_like_AB2 Unch 44.2 95 0.0021 26.2 6.8 53 180-239 2-54 (135)
82 cd01044 Ferritin_CCC1_N Ferrit 43.4 1.4E+02 0.003 24.6 7.5 52 183-238 3-54 (125)
83 TIGR02284 conserved hypothetic 41.8 1.5E+02 0.0032 25.3 7.7 40 203-243 22-61 (139)
84 COG1592 Rubrerythrin [Energy p 40.4 1.4E+02 0.0031 26.8 7.5 61 178-239 4-64 (166)
85 cd07672 F-BAR_PSTPIP2 The F-BA 40.0 3.2E+02 0.0069 25.6 13.0 93 126-239 20-113 (240)
86 TIGR00754 bfr bacterioferritin 39.2 2.4E+02 0.0053 24.0 9.1 60 92-153 80-139 (157)
87 cd07648 F-BAR_FCHO The F-BAR ( 38.1 3.3E+02 0.0072 25.2 11.8 32 126-157 20-51 (261)
88 cd07674 F-BAR_FCHO1 The F-BAR 36.9 3.6E+02 0.0078 25.3 11.1 27 127-153 21-47 (261)
89 PRK09448 DNA starvation/statio 36.9 1.6E+02 0.0034 25.9 7.2 62 178-243 22-83 (162)
90 TIGR02263 benz_CoA_red_C benzo 35.4 1.2E+02 0.0025 30.2 6.8 64 180-243 161-228 (380)
91 cd01058 AAMH_B Aromatic and Al 34.7 4.3E+02 0.0094 25.6 15.2 141 90-237 92-253 (304)
92 PF11583 AurF: P-aminobenzoate 34.4 4E+02 0.0087 25.1 10.8 107 128-238 112-227 (304)
93 cd07655 F-BAR_PACSIN The F-BAR 32.7 4.2E+02 0.0091 24.8 11.3 34 126-159 20-53 (258)
94 cd01043 DPS DPS protein, ferri 32.5 76 0.0016 26.3 4.3 56 182-238 2-57 (139)
95 PF02332 Phenol_Hydrox: Methan 32.3 4.1E+02 0.0088 24.5 12.4 138 92-237 68-226 (233)
96 COG4445 MiaE Hydroxylase for s 32.1 4E+02 0.0088 24.4 13.2 66 97-168 31-96 (203)
97 PRK13456 DNA protection protei 31.9 2.9E+02 0.0062 25.4 8.1 61 177-238 19-79 (186)
98 COG3685 Uncharacterized protei 31.6 3.4E+02 0.0074 24.6 8.4 56 179-238 10-65 (167)
99 smart00055 FCH Fes/CIP4 homolo 31.1 2.3E+02 0.005 21.3 7.2 28 127-154 25-52 (87)
100 KOG4090 Uncharacterized conser 29.6 38 0.00082 30.2 2.0 37 208-246 118-154 (157)
101 PF03232 COQ7: Ubiquinone bios 28.8 3.3E+02 0.0071 24.5 7.9 57 180-239 4-60 (172)
102 PF11860 DUF3380: Protein of u 28.7 1.1E+02 0.0023 27.7 4.8 59 96-156 77-135 (175)
103 cd00904 Ferritin Ferritin iron 26.4 4.2E+02 0.0091 22.8 8.7 60 178-238 3-64 (160)
104 PF00611 FCH: Fes/CIP4, and EF 26.3 1.3E+02 0.0029 22.6 4.4 31 126-156 24-54 (91)
105 COG4902 Uncharacterized protei 24.4 5.3E+02 0.012 23.3 10.6 97 89-217 44-140 (189)
106 TIGR03191 benz_CoA_bzdO benzoy 24.3 3.2E+02 0.0069 27.8 7.9 64 180-244 181-251 (430)
107 PRK13689 hypothetical protein; 23.4 79 0.0017 25.0 2.6 53 218-287 5-57 (75)
108 cd00280 TRFH Telomeric Repeat 22.4 6.4E+02 0.014 23.5 12.6 142 132-285 22-191 (200)
109 COG3685 Uncharacterized protei 20.1 6.6E+02 0.014 22.8 16.0 140 90-238 5-156 (167)
No 1
>KOG2332 consensus Ferritin [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-47 Score=335.65 Aligned_cols=162 Identities=55% Similarity=0.831 Sum_probs=155.5
Q ss_pred CcccchhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee
Q 021703 81 VPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK 160 (309)
Q Consensus 81 ~~~~s~aRq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~ 160 (309)
....+.+|++++++|+.++|.|||.|+++||+|++|++||+||+++++||++||+++|+|||+||++||+|+++|||+|+
T Consensus 3 ~~~~~~~r~~~~~~~~~~in~~in~el~~sy~Ylsma~yf~rd~v~l~g~~~ff~~~s~eereha~klm~~~n~rgg~i~ 82 (178)
T KOG2332|consen 3 TKMSSEARQNYHDEAEAAINSQINLELNASYVYLSMAAYFDRDDVALKGFAKFFLKQSQEEREHAEKLMKTQNMRGGRIE 82 (178)
T ss_pred ccchHHHhhcchhhccchhhhhccchhccchhhhhhhhccCccccchhhhhhhhhhhhhhhhhhHHHHHHHHHHhCCccc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCCccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhh
Q 021703 161 LQSILMPLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRR 240 (309)
Q Consensus 161 L~~I~~P~~ef~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~Lrr 240 (309)
+++|.+|. ..+|++.++|||.||.+||.|+++|.+||.+|.+.+|++++||||++||.|||+.|++|+++++++++
T Consensus 83 l~~i~~P~----~~ew~~~l~ale~al~LEk~vn~sLl~Lh~lA~~knD~hL~dflE~~fL~eQVksIkeL~~~~~~l~k 158 (178)
T KOG2332|consen 83 LQDIKKPE----LDEWGKGLEALEAALHLEKNVNQSLLELHSLATKKNDPHLCDFLESHFLNEQVKSIKELSDYLANLKK 158 (178)
T ss_pred cccccccc----cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhhhHHHHHHHHHHHHHHHhHHh
Confidence 99999995 46899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC---CCC
Q 021703 241 VGQ---GHG 246 (309)
Q Consensus 241 vG~---g~G 246 (309)
+|. |.|
T Consensus 159 ~~~~~~g~~ 167 (178)
T KOG2332|consen 159 MGAPDGGLG 167 (178)
T ss_pred ccCCCCchh
Confidence 994 555
No 2
>PRK15022 ferritin-like protein; Provisional
Probab=100.00 E-value=1.4e-42 Score=305.86 Aligned_cols=161 Identities=18% Similarity=0.236 Sum_probs=149.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCc
Q 021703 90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS 169 (309)
Q Consensus 90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~ 169 (309)
+.+++++++||+|||.|+.|||+|++||+||++ .+|||||+||+.+|+|||+||+||++|+++|||+|.+++|++|+.
T Consensus 1 m~~~~~~~~LN~QIn~E~~aSy~YLsMa~~~~~--~~L~GfA~ff~~qa~EEreHA~k~~~yl~~rGg~v~l~~I~~P~~ 78 (167)
T PRK15022 1 MATAGMLLKLNSQMNLEFYASNLYLHLSEWCSE--QSLNGTATFLRAQAQSNVTQMMRMFNFMKSAGATPIVKAIDVPGE 78 (167)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeCCCCCCcc
Confidence 467899999999999999999999999999986 689999999999999999999999999999999999999999975
Q ss_pred cCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhccC-CCCCC
Q 021703 170 EFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQ-GHGRN 248 (309)
Q Consensus 170 ef~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~LrrvG~-g~G~~ 248 (309)
+ |++++++|+.+|++|+.||++|++|+++|.+++|++|++||+ ||+.||+++++.+.+++++++++|+ |.|+.
T Consensus 79 ~-----~~s~~e~fe~al~hEk~vt~~I~~L~~~A~~~~D~~t~~FL~-wfv~EQ~eEe~~~~~ild~l~~~~~~g~g~~ 152 (167)
T PRK15022 79 K-----LNSLEELFQKTLEEYEQRSSTLAQLADEAKALNDDSTLNFLR-DLEKEQQHDGLLLQTILDEVRSAKLAGLCPV 152 (167)
T ss_pred c-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCcchh
Confidence 4 568999999999999999999999999999999999999999 9999999999999999999999985 77866
Q ss_pred hhhHHHHhhhh
Q 021703 249 QNKISFLINVT 259 (309)
Q Consensus 249 q~~~~~l~n~~ 259 (309)
+.| +.+.+++
T Consensus 153 ~~D-~~~~~~~ 162 (167)
T PRK15022 153 QTD-QHLLNVV 162 (167)
T ss_pred Hhh-HHHHHhh
Confidence 666 5555543
No 3
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=100.00 E-value=2.5e-41 Score=293.88 Aligned_cols=147 Identities=51% Similarity=0.826 Sum_probs=141.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccC
Q 021703 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEF 171 (309)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~ef 171 (309)
+++|+++||+|||.|++|||+|++||+||++++++|||||+||+++|+|||+||++|++||++|||+|+++.|++|..
T Consensus 1 ~~~~~~~Ln~qi~~El~as~~Yl~ma~~~~~~~~~l~g~a~~f~~~s~eE~~HA~~l~~yi~~rgg~~~l~~i~~~~~-- 78 (160)
T cd00904 1 SEKVEAAVNRQLNLELYASYTYLSMATYFDRDDVALKGVAHFFKEQAQEEREHAEKFYKYQNERGGRVELQDIEKPPS-- 78 (160)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccCcCCCCcc--
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHH-hHHHHHHHHHHHHHHHHHHhhccC
Q 021703 172 DHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESK-YLHEQVEAIKKISEYVAQLRRVGQ 243 (309)
Q Consensus 172 ~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~-FL~EQvE~Ik~L~d~l~~LrrvG~ 243 (309)
.+|++++++|+.+|++|+.+++.|++|+++|.+++|++|++||+ | ||+||+++++++++++++++++|+
T Consensus 79 --~~~~~~~e~~e~al~~Ek~v~~~i~~l~~~A~~~~D~~t~~fl~-~~fi~eQ~ee~~~~~~~l~~l~~~~~ 148 (160)
T cd00904 79 --DEWGGTLDAMEAALKLEKFVNQALLDLHELASEEKDPHLCDFLE-SHFLDEQVKEIKQVGDILTNLERLNG 148 (160)
T ss_pred --cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHhh-chhhHHHHHHHHHHHHHHHHHHhhcC
Confidence 23568999999999999999999999999999999999999999 7 999999999999999999999984
No 4
>PRK10304 ferritin; Provisional
Probab=100.00 E-value=7e-41 Score=294.07 Aligned_cols=149 Identities=26% Similarity=0.416 Sum_probs=142.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCc
Q 021703 90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS 169 (309)
Q Consensus 90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~ 169 (309)
+++++++++||+|||.|++|+|+|++||+||++ +||+|+|+||+.+|.|||+||+||++|+++|||+|.+++|++|..
T Consensus 1 ~~~~~i~~~Ln~qin~El~As~~Yl~ma~~~~~--~gl~g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~p~~ 78 (165)
T PRK10304 1 MLKPEMIEKLNEQMNLELYSSLLYQQMSAWCSY--HTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFA 78 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCCCcc
Confidence 468999999999999999999999999999997 799999999999999999999999999999999999999998876
Q ss_pred cCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhccC-CCC
Q 021703 170 EFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQ-GHG 246 (309)
Q Consensus 170 ef~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~LrrvG~-g~G 246 (309)
+ |.++.++|+.+|++|+.+++.|++++++|.+++|++|++||+ |||+||+|+++.+++++++++++|+ |.|
T Consensus 79 ~-----~~s~~e~~~~~l~~E~~vt~~i~~l~~~A~~~~D~~t~~fl~-~fl~EQveEe~~~~~l~~~l~~~~~~g~~ 150 (165)
T PRK10304 79 E-----YSSLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFLQ-WYVSEQHEEEKLFKSIIDKLSLAGKSGEG 150 (165)
T ss_pred c-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCCcch
Confidence 5 468999999999999999999999999999999999999999 9999999999999999999999996 555
No 5
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-39 Score=282.06 Aligned_cols=160 Identities=30% Similarity=0.437 Sum_probs=151.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCc
Q 021703 90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS 169 (309)
Q Consensus 90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~ 169 (309)
+.++++.++||+|||.|+.+||+|++||+||+. .+|||+|+||+.||+||+.||+||++|++.||++|.+..|..|+.
T Consensus 1 mls~~~~~~LN~Q~N~E~yas~lYl~maa~~~~--~~l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~~~~l~~I~~P~~ 78 (167)
T COG1528 1 MLSEKMIELLNEQMNLEFYASNLYLQMAAWCSS--ESLPGFAKFLRAQAQEELTHAMKLFNYLNERGARPELKAIEAPPN 78 (167)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCcCCCcc
Confidence 357899999999999999999999999999996 699999999999999999999999999999999999999999997
Q ss_pred cCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhccC-CCCCC
Q 021703 170 EFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQ-GHGRN 248 (309)
Q Consensus 170 ef~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~LrrvG~-g~G~~ 248 (309)
+| +++.++|+.+|++|+.||+.|.+|.++|.+++|+.|.+||+ ||+.||+|+++.+++++++++++|+ |.|+.
T Consensus 79 ~~-----~s~~e~f~~tlehEq~vt~~I~~L~~~a~~~kD~~T~nFLq-Wfv~EQ~eEe~l~~~I~d~~~~ag~~~~~l~ 152 (167)
T COG1528 79 KF-----SSLKELFEKTLEHEQKVTSSINELAEVAREEKDYATFNFLQ-WFVAEQVEEEKLFKTILDKLELAGNDGEGLY 152 (167)
T ss_pred cc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCccchh
Confidence 65 47999999999999999999999999999999999999999 9999999999999999999999997 79988
Q ss_pred hhhHHHHhhh
Q 021703 249 QNKISFLINV 258 (309)
Q Consensus 249 q~~~~~l~n~ 258 (309)
+++ ++|.++
T Consensus 153 ~~D-~~L~~~ 161 (167)
T COG1528 153 LID-KELKNR 161 (167)
T ss_pred hhH-HHHHhh
Confidence 888 555554
No 6
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=100.00 E-value=2.1e-38 Score=275.05 Aligned_cols=158 Identities=56% Similarity=0.904 Sum_probs=145.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccC
Q 021703 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEF 171 (309)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~ef 171 (309)
+++|+++||+||+.|++|+|+|++||+||++.+++++|||+||+.+|+|||+||++|++|++.|||+|++++|++|..
T Consensus 1 ~~~i~~~Ln~~i~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~~~~i~~~~~-- 78 (161)
T cd01056 1 HEECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKPEK-- 78 (161)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCC--
Confidence 478999999999999999999999999999977799999999999999999999999999999999999999999971
Q ss_pred CcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHH-hHHHHHHHHHHHHHHHHHHhhccCCCCCChh
Q 021703 172 DHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESK-YLHEQVEAIKKISEYVAQLRRVGQGHGRNQN 250 (309)
Q Consensus 172 ~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~-FL~EQvE~Ik~L~d~l~~LrrvG~g~G~~q~ 250 (309)
.+|.++.++|+.||++|+.+++.|++++++|.+++|+.|.+||+ | ||.||+++++++++++++++++++++ -.
T Consensus 79 --~~~~~~~e~l~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~-~~fl~eQ~e~~~~~~~~l~~l~~~~~~~---~~ 152 (161)
T cd01056 79 --DEWGSGLEALELALDLEKLVNQSLLDLHKLASEHNDPHLADFLE-SEFLEEQVESIKKLAGYITNLKRVGKPQ---SG 152 (161)
T ss_pred --cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCCHhHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHhcCCC---CC
Confidence 23568999999999999999999999999999999999999999 6 99999999999999999999998631 01
Q ss_pred hHHHHhh
Q 021703 251 KISFLIN 257 (309)
Q Consensus 251 ~~~~l~n 257 (309)
++.||||
T Consensus 153 ~~~yl~D 159 (161)
T cd01056 153 LGEYLFD 159 (161)
T ss_pred ceeeecc
Confidence 2367766
No 7
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=100.00 E-value=3.7e-35 Score=251.02 Aligned_cols=147 Identities=39% Similarity=0.595 Sum_probs=140.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccC
Q 021703 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEF 171 (309)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~ef 171 (309)
+++|+++||+||+.|+.|+|+|++||.+|++ .++|||++||+.+|+||++||+++++|+++|||+|+++++++|..
T Consensus 1 ~~~~~~~Ln~~~~~El~A~~~Yl~~a~~~~~--~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~~-- 76 (156)
T cd01055 1 SEKLEKALNEQINLELYSSYLYLAMAAWFDS--KGLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPS-- 76 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCCc--
Confidence 5789999999999999999999999999999 599999999999999999999999999999999999999998864
Q ss_pred CcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhccC-CCC
Q 021703 172 DHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQ-GHG 246 (309)
Q Consensus 172 ~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~LrrvG~-g~G 246 (309)
+|+++.++++.+|++|+.+++.|.+++++|.+++|+.+++|++ +|+++|+++++++++++++++++|+ |.|
T Consensus 77 ---~~~~~~~~l~~al~~E~~~~~~~~~l~~~A~~~~D~~~~~~l~-~~l~~q~e~~~~~~~~l~~l~~~g~~~~~ 148 (156)
T cd01055 77 ---EFESLLEVFEAALEHEQKVTESINNLVDLALEEKDYATFNFLQ-WFVKEQVEEEALARDILDKLKLAGDDGGG 148 (156)
T ss_pred ---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 3568999999999999999999999999999999999999999 9999999999999999999999986 455
No 8
>PRK10635 bacterioferritin; Provisional
Probab=99.95 E-value=3.6e-27 Score=206.03 Aligned_cols=145 Identities=19% Similarity=0.112 Sum_probs=138.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCc
Q 021703 90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS 169 (309)
Q Consensus 90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~ 169 (309)
+.++++.+.||++++.|+.|+++|+.+|.+|++ +|+++++++|+.+|.|||+||++|++||+.+||.|+++++++|..
T Consensus 2 ~~~~~vi~~LN~~L~~El~Ai~QY~~ha~~~~~--~G~~~la~~~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~~~~~~~ 79 (158)
T PRK10635 2 KGDVKIINYLNKLLGNELVAINQYFLHARMFKN--WGLMRLNDVEYHESIDEMKHADKYIERILFLEGIPNLQDLGKLNI 79 (158)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence 468899999999999999999999999999998 899999999999999999999999999999999999999988765
Q ss_pred cCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhccC
Q 021703 170 EFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQ 243 (309)
Q Consensus 170 ef~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~LrrvG~ 243 (309)
. .++.++++.++.+|+.++..|+++++.|.+.+|+.+.++++ +||.|+.+|++++.+.+..++++|.
T Consensus 80 g------~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~~D~~s~~ll~-~iL~dEe~H~~~le~~l~~i~~~G~ 146 (158)
T PRK10635 80 G------EDVEEMLRSDLRLELEGAKDLREAIAYADSVHDYVSRDMMI-EILADEEGHIDWLETELDLIGKLGL 146 (158)
T ss_pred C------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3 47999999999999999999999999999999999999999 9999999999999999999999974
No 9
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=99.95 E-value=3.1e-26 Score=197.67 Aligned_cols=143 Identities=21% Similarity=0.167 Sum_probs=136.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCcc
Q 021703 91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSE 170 (309)
Q Consensus 91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~e 170 (309)
-++++.++||+|++.|+.|+++|+.|+.++.. ++++|++.||++++.||++||++|++|++.+||.|.+.+++.|+..
T Consensus 3 ~~~~~~~~LN~~l~~E~~a~~~Y~~~~~~~~~--~~~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~i~~~~~~ 80 (157)
T TIGR00754 3 GDPDVIQHLNKQLTNELTAINQYFLHARMQKN--WGLKELADHEYHESIDEMKHADEIIERILFLEGLPNLQDLGKLRIG 80 (157)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCCCCCC
Confidence 37899999999999999999999999999955 8999999999999999999999999999999999999998887653
Q ss_pred CCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhcc
Q 021703 171 FDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVG 242 (309)
Q Consensus 171 f~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~LrrvG 242 (309)
.++.++++.++++|+.++..|+++++.|.+.+|+.|.+||+ ||+.|+.++...++.+++.+.++|
T Consensus 81 ------~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~ll~-~~i~eee~h~~~l~~~l~~~~~~g 145 (157)
T TIGR00754 81 ------ETVREMLEADLALELDVLNRLKEAIAYAEEVRDYVSRDLLE-EILEDEEEHIDWLETQLELIDKLG 145 (157)
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 36899999999999999999999999999999999999999 999999999999999999999997
No 10
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=99.93 E-value=8.8e-25 Score=179.73 Aligned_cols=137 Identities=36% Similarity=0.460 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc-----ccCCCcc
Q 021703 96 EAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQS-----ILMPLSE 170 (309)
Q Consensus 96 e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~-----I~~P~~e 170 (309)
+++||++++.|+.+++.|+.++.+|+. .+++|+++||+++++|+++||+++++|+..|||.|.... +++|..
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~~~~~--~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~~~~~~~- 77 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHWNFDG--PNFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPEIPKPPE- 77 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHHHHSSSS-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcC--CCchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhhhhcccc-
Confidence 578999999999999999999999995 799999999999999999999999999999999766544 455543
Q ss_pred CCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhc
Q 021703 171 FDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRV 241 (309)
Q Consensus 171 f~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~Lrrv 241 (309)
|.++.++++.+++.|+.+.+.++++++.|.+.+|+.|.+|++ +|+.+|.++++.+++++++++||
T Consensus 78 -----~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~~-~~l~~~~~~~~~l~~~l~~l~~~ 142 (142)
T PF00210_consen 78 -----WTDPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADFLD-EFLEEEEKHIWMLQAHLTNLKRM 142 (142)
T ss_dssp -----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcC
Confidence 468999999999999999999999999999999999999997 99999999999999999999986
No 11
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=99.93 E-value=3.4e-24 Score=181.97 Aligned_cols=143 Identities=22% Similarity=0.210 Sum_probs=135.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccC
Q 021703 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEF 171 (309)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~ef 171 (309)
++++++.||++|+.|+.++++|+.++.+|++ .++++++++|++++.||++||+++.+|++.+||.|.+..+++|...
T Consensus 3 ~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~--~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~~~~~- 79 (153)
T cd00907 3 DPKVIEALNKALTGELTAINQYFLHARMLED--WGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGKLRIG- 79 (153)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCcC-
Confidence 6789999999999999999999999999987 6899999999999999999999999999999999999887777543
Q ss_pred CcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhccC
Q 021703 172 DHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQ 243 (309)
Q Consensus 172 ~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~LrrvG~ 243 (309)
.+..++++.+++.|+.+++.|++++++|.+.+|+.|++|++ +++.++.+|+..++..+..++++|+
T Consensus 80 -----~~~~~~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~-~~~~~e~~h~~~l~~~l~~~~~~g~ 145 (153)
T cd00907 80 -----EDVPEMLENDLALEYEAIAALNEAIALCEEVGDYVSRDLLE-EILEDEEEHIDWLETQLDLIDKMGL 145 (153)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 26789999999999999999999999999999999999999 9999999999999999999999986
No 12
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=99.88 E-value=2.2e-21 Score=163.40 Aligned_cols=131 Identities=18% Similarity=0.199 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCCcC
Q 021703 95 CEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHA 174 (309)
Q Consensus 95 ~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~ef~~~ 174 (309)
..+.||+.+..|+.++++|++|+.++++ .|++|+|++|+.+|.+|+.||+++++|+..+||.|. .|+.
T Consensus 2 t~~~L~~a~~~E~~a~~~Y~~~a~~a~~--~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~-----~~~~----- 69 (134)
T cd01041 2 TEKNLLAAFAGESQARNRYTYFAEKARK--EGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT-----GPPI----- 69 (134)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----CCCC-----
Confidence 4578999999999999999999999998 699999999999999999999999999999999999 4443
Q ss_pred ccCcHHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 021703 175 EKGDALYAMELTLSLEKL-TNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (309)
Q Consensus 175 e~~d~lea~E~AL~lEk~-vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~L 238 (309)
+++++.+.|+.++++|+. +++.|.+++++|.+++|+.+.++++ +++.++.+|.+.+.+.+.+|
T Consensus 70 ~~~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~-~i~~~E~~H~~~l~~~l~~l 133 (134)
T cd01041 70 GIGDTLENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFE-AIAEAEKVHAERYKKALENL 133 (134)
T ss_pred CcchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHhhcc
Confidence 346899999999999996 8899999999999999999999999 99999999999999988764
No 13
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=99.87 E-value=1e-20 Score=159.75 Aligned_cols=138 Identities=20% Similarity=0.196 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccc------
Q 021703 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIL------ 165 (309)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~------ 165 (309)
.+++++.||++++.|+.++++|+.++.++++ .++++++++|++++.||++||+++.+|++.+||+|..+...
T Consensus 4 ~~~~~~~Ln~~la~e~~~~~~y~~~~~~~~g--~~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~~~~~~ 81 (148)
T cd01052 4 VDELIELLNKAFADEWLAYYYYTILAKHVKG--PEGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKDWYEISG 81 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhc
Confidence 3578999999999999999999999999998 58999999999999999999999999999999999986531
Q ss_pred -CCCccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHH
Q 021703 166 -MPLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYV 235 (309)
Q Consensus 166 -~P~~ef~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l 235 (309)
.+... .....++.++++.+++.|+.+++.++++++.|.+ +|+.|+++++ +++.||.+|++++.+++
T Consensus 82 ~~~~~~--~~~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~-~D~~t~~ll~-~~l~de~~h~~~~~~~~ 148 (148)
T cd01052 82 CKCGYL--PPDPPDVKGILKVNLKAERCAIKVYKELCDMTHG-KDPVTYDLAL-AILNEEIEHEEDLEELL 148 (148)
T ss_pred ccccCC--CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHH-HHHHHHHHHHHHHHhhC
Confidence 11110 0123578999999999999999999999999975 9999999999 99999999999998763
No 14
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=99.86 E-value=2.8e-20 Score=160.86 Aligned_cols=145 Identities=21% Similarity=0.188 Sum_probs=137.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCc
Q 021703 90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS 169 (309)
Q Consensus 90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~ 169 (309)
+..+++++.||+++..||.|..+|+.++..+++ ||+.-++++|+++|.+||.||++++++|+..+|.|++++..+-..
T Consensus 2 kG~~~Vi~~LN~~L~~EL~ainQYflHsrM~~~--WG~~~L~~~~~~esi~Em~HAd~lieRIlfLeG~Pnlq~~~~l~i 79 (157)
T COG2193 2 KGDPKVIRLLNEALGLELAAINQYFLHSRMYKN--WGLTKLAAHEYHESIEEMKHADQLIERILFLEGLPNLQDLGKLRI 79 (157)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--cChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccccc
Confidence 456899999999999999999999999999997 999999999999999999999999999999999999999887554
Q ss_pred cCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhccC
Q 021703 170 EFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQ 243 (309)
Q Consensus 170 ef~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~LrrvG~ 243 (309)
. .++.++++..|.+|..+.+.|.+.+..|.+.+|+.+++.++ ..|.++.||++++.+.+.-+.++|-
T Consensus 80 G------~tv~E~L~~DL~~E~~a~~~lk~~i~~~e~~~Dyvsrdl~~-~iL~deEEHid~LetqL~li~~iG~ 146 (157)
T COG2193 80 G------ETVKEMLEADLALEYEARDALKEAIAYCEEVQDYVSRDLLE-EILADEEEHIDWLETQLDLIAKIGE 146 (157)
T ss_pred C------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH-HHHcchHHHHHHHHHHHHHHHHHhH
Confidence 3 47999999999999999999999999999999999999999 9999999999999999999999974
No 15
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=99.77 E-value=1.2e-17 Score=139.75 Aligned_cols=120 Identities=21% Similarity=0.186 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCCcC
Q 021703 95 CEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHA 174 (309)
Q Consensus 95 ~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~ef~~~ 174 (309)
+++.||+|++.|+.++++|+.|+.+++. .|++|+|++|+.+|.+|+.||+++.+++ |+ |+
T Consensus 2 ~~~~L~~a~~~E~~a~~~Y~~~a~~a~~--eG~~~~A~~f~~~a~eE~~HA~~~~~~l---~~------i~--------- 61 (123)
T cd01046 2 LEEDLEANFKGETTEVGMYLAMARVAQR--EGYPEVAEELKRIAMEEAEHAARFAELL---GK------VS--------- 61 (123)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHH---hc------Cc---------
Confidence 6789999999999999999999999998 5999999999999999999999999966 22 11
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 021703 175 EKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQ 237 (309)
Q Consensus 175 e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~ 237 (309)
+|+.++|+.++++|+.+++.|.+++++|.+++|+.+.+|++ +.++.+.+|.+.+...+..
T Consensus 62 --~~~~~~le~a~~~E~~~~~~~~~~~~~A~~egd~~~~~~~~-~~~~~E~~H~~~~~~~l~~ 121 (123)
T cd01046 62 --EDTKENLEMMLEGEAGANEGKKDAATEAKAEGLDEAHDFFH-EAAKDEARHGKMLKGLLER 121 (123)
T ss_pred --ccHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence 36899999999999999999999999999999999999999 9999999999999988765
No 16
>PRK13456 DNA protection protein DPS; Provisional
Probab=99.67 E-value=4.4e-15 Score=133.18 Aligned_cols=141 Identities=18% Similarity=0.212 Sum_probs=123.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccc---CCC
Q 021703 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIL---MPL 168 (309)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~---~P~ 168 (309)
.+++.+.||+.+..|+.+.|.|..+++.... +..++++.||.+.+.||+.||+.|.++|.++||.|.+.+-+ ...
T Consensus 18 ~~~li~lLn~AlA~E~~a~~~Y~~~a~~~~G--~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ls~ 95 (186)
T PRK13456 18 VDKLVELLVKNAAAEFTTYYYYTILRAHLIG--LEGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHDISA 95 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhhhhc
Confidence 4678999999999999999999999999998 67899999999999999999999999999999999987652 011
Q ss_pred ccC-CcCc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHH
Q 021703 169 SEF-DHAE-KGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVA 236 (309)
Q Consensus 169 ~ef-~~~e-~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~ 236 (309)
+.+ +-++ ..|+.++++.+|..|+..+..|+++++.+. .+|+.|.+.++ .+|.|+++|.+++.+++.
T Consensus 96 ~~~~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~-~kDp~T~~l~~-~IL~dE~eH~~dl~~lL~ 163 (186)
T PRK13456 96 CPDAYLPENPTDPKEILKVLLEAERCAIRTYTEICDMTA-GKDPRTYDLAL-AILQEEIEHEAWFSELLG 163 (186)
T ss_pred CccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 111 0012 247999999999999999999999999998 68999999999 799999999999999985
No 17
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=99.31 E-value=6.7e-11 Score=99.66 Aligned_cols=129 Identities=18% Similarity=0.105 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc--------ccCCCc
Q 021703 98 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQS--------ILMPLS 169 (309)
Q Consensus 98 aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~--------I~~P~~ 169 (309)
.||..+..++..++.|....-+... .++..+..+|.+.++++++||..+.+++...||.|..+. ++.++.
T Consensus 2 ~Ln~~lA~~~~~~~~~~~~HW~v~G--~~f~~lh~~l~e~~~~~~~~~D~lAERi~~lgg~P~~~~~~~~~~s~l~~~~~ 79 (139)
T cd01043 2 ALNQLLADLYVLYLKLKNYHWNVKG--PNFFALHELFEELYDELREAIDEIAERIRALGGKPLGTLKEYAELSTIKEEPA 79 (139)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCccC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCCCCCC
Confidence 6899999999999999988877777 689999999999999999999999999999999998764 444332
Q ss_pred cCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHH
Q 021703 170 EFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEY 234 (309)
Q Consensus 170 ef~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~ 234 (309)
.+ .++.++++..++.|..+...+++.++.|.+.+|+.|.++++ .++.+..+++-.++.+
T Consensus 80 ~~-----~~~~~~l~~~~~~~~~~i~~~~~~i~~a~~~~D~~t~~ll~-~il~~~ek~~w~l~a~ 138 (139)
T cd01043 80 GV-----LSAKEMVAELLEDYETLIEELREAIELADEAGDPATADLLT-EIIRELEKQAWMLRAH 138 (139)
T ss_pred CC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 21 36889999999999999999999999999999999999999 8999999988887654
No 18
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=99.29 E-value=1.9e-10 Score=89.52 Aligned_cols=123 Identities=22% Similarity=0.249 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc-----ccCCCccCC
Q 021703 98 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQS-----ILMPLSEFD 172 (309)
Q Consensus 98 aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~-----I~~P~~ef~ 172 (309)
+||..+..|+.+...|..++..++ .+++...|...+.+|+.|++.+.+++..+|+.+.... ...+.
T Consensus 2 ~L~~~~~~E~~a~~~y~~~~~~~~-----~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~~~~~~~~~---- 72 (130)
T cd00657 2 LLNDALAGEYAAIIAYGQLAARAP-----DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAHLLAAYALP---- 72 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhcccC----
Confidence 689999999999999999999876 5789999999999999999999999999999987543 11111
Q ss_pred cCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHH
Q 021703 173 HAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEY 234 (309)
Q Consensus 173 ~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~ 234 (309)
....+..+++..++..|......+..+.+.+. |+.+.+++. .++.++.+|.+.+..+
T Consensus 73 -~~~~~~~~~l~~~~~~E~~~~~~y~~~~~~~~---d~~~~~~~~-~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 73 -KTSDDPAEALRAALEVEARAIAAYRELIEQAD---DPELRRLLE-RILADEQRHAAWFRKL 129 (130)
T ss_pred -CCccCHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 12357889999999999999999999988874 999999999 9999999999988764
No 19
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=99.24 E-value=6.6e-10 Score=95.42 Aligned_cols=136 Identities=14% Similarity=0.078 Sum_probs=112.1
Q ss_pred CHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCC
Q 021703 92 TDDCEAAINEQIN---VEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPL 168 (309)
Q Consensus 92 s~e~e~aLNeQIn---~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~ 168 (309)
+++.-..|++|+. .|+.|..+|+..+.-... +.+.+++.|...|.+|++|++.|.+++.++||.+.+.......
T Consensus 11 ~~~~~~~~~~~~~g~~~E~~ai~~Y~y~~~~~~~---~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~~ 87 (154)
T cd07908 11 NPRYAELLLDDYAGTNSELTAISQYIYQHLISEE---KYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSDK 87 (154)
T ss_pred ChHHHHHHHHHhCCcchHHHHHHHHHHHHHHccC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhcccc
Confidence 5667788999988 999999999999887765 5799999999999999999999999999999988753321100
Q ss_pred c-cCC---cCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHH
Q 021703 169 S-EFD---HAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEY 234 (309)
Q Consensus 169 ~-ef~---~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~ 234 (309)
. .|. -....+..++++.++..|+.....|.++.+. ..|+.+.+.++ .++.++.+|++.|.++
T Consensus 88 ~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~---~~d~~~r~ll~-~I~~eE~~H~~~L~~~ 153 (154)
T cd07908 88 FTYWTGKYVNYGESIKEMLKLDIASEKAAIAKYKRQAET---IKDPYIRALLN-RIILDEKLHIKILEEL 153 (154)
T ss_pred CCcCCccccCCccCHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 0 000 0012478899999999999999999999884 48999999999 8999999999999865
No 20
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=98.95 E-value=2.3e-08 Score=81.36 Aligned_cols=129 Identities=23% Similarity=0.223 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcC--CeeeeccccCCCccC---
Q 021703 97 AAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRG--GKVKLQSILMPLSEF--- 171 (309)
Q Consensus 97 ~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RG--G~V~L~~I~~P~~ef--- 171 (309)
++||..|..|..+...|...+..+++ +++..+|+..+.+|+.|++.|.+.+..+| +.+.+..-.......
T Consensus 1 ~~l~~a~~~E~~~~~~Y~~~a~~~~~-----~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (139)
T cd01045 1 EILALAIKMEEEAAEFYLELAEKAKD-----PELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEP 75 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhh
Confidence 36899999999999999999998876 37999999999999999999999999997 333332111000000
Q ss_pred ----CcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHH
Q 021703 172 ----DHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEY 234 (309)
Q Consensus 172 ----~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~ 234 (309)
.-....+..++++.++..|+.....|.++.+. ..|+.+.+.+. .++++..+|.+.+.++
T Consensus 76 ~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~---~~d~~~~~~~~-~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 76 EFKKALESLMDPLEALRLAIEIEKDAIEFYEELAEK---AEDPEVKKLFE-ELAEEERGHLRLLEEL 138 (139)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 00122578999999999999999988888765 47899999999 8999999999998764
No 21
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=98.94 E-value=8.3e-08 Score=84.10 Aligned_cols=135 Identities=12% Similarity=0.092 Sum_probs=111.1
Q ss_pred CHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCC
Q 021703 92 TDDCEAAINEQIN---VEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPL 168 (309)
Q Consensus 92 s~e~e~aLNeQIn---~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~ 168 (309)
++..-.+|.+|+. -|+.|..+|+..+..++ ..+.++..|.+.|.||+.|++.|.+.+.+.||.+.-.+=.
T Consensus 18 ~p~~A~~l~~~~gG~~gEl~ai~qYl~q~~~~~----~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g~pw~--- 90 (156)
T cd01051 18 DPRFAKLLQEQLGGAFGELSAAMQYLFQSFNFR----EDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQGVPWT--- 90 (156)
T ss_pred CHHHHHHHHHHhCCccHHHHHHHHHHHHHhhcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCC---
Confidence 3445556666654 69999999999999994 3588999999999999999999999999999844321111
Q ss_pred ccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 021703 169 SEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (309)
Q Consensus 169 ~ef~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~L 238 (309)
..|.. ..+++...++.+++.|+.....+.++++.+ +|+.+.+.|. +++.+++.|...+...+..+
T Consensus 91 ~~yv~-~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~---~Dp~v~~~l~-~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 91 AAYIQ-SSGNLVADLRSNIAAESRARLTYERLYEMT---DDPGVKDTLS-FLLVREIVHQNAFGKALESL 155 (156)
T ss_pred CcccC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 11111 236899999999999999999999999987 4999999999 89999999999999998876
No 22
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=98.71 E-value=5.1e-07 Score=73.60 Aligned_cols=129 Identities=21% Similarity=0.261 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccc-------CCCc
Q 021703 97 AAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIL-------MPLS 169 (309)
Q Consensus 97 ~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~-------~P~~ 169 (309)
+.|+..|..|..+...|..+|.-+.++ + |-+++.|+..|.+|.+|+..|.+.+.++++.+...... .+..
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~~~~~~--~-p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAEKAKDE--G-PELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEEKVEYSFFPKL 77 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCCCCCHCCCCTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhc--c-cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhhhhhhhhcchh
Confidence 468899999999999999999999985 5 88999999999999999999999999998765432111 1111
Q ss_pred cCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHH
Q 021703 170 EFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEY 234 (309)
Q Consensus 170 ef~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~ 234 (309)
.... ..++..+++.++..|+.....+..+.. ...|+....+++ .+..++-+|.+.+..+
T Consensus 78 ~~~~--~~~~~~~l~~a~~~E~~~~~~Y~~~a~---~~~~~~~~~~~~-~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 78 EEET--DENLEEALEMAIKEEKDAYEFYAELAR---KAPDPEIRKLFE-ELAKEEKEHEDLLEKL 136 (137)
T ss_dssp CSSH--HHHHHHHHHHHHHHHHTHHHHHHHHHH---HTTSHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 1111 125789999999999998888887755 558999999999 8999999999988764
No 23
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=98.54 E-value=6.8e-06 Score=72.36 Aligned_cols=131 Identities=10% Similarity=0.081 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee--------ccc
Q 021703 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL--------QSI 164 (309)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L--------~~I 164 (309)
+.+.+.||..+..++.....|..+.-+-.. .....+..+|.+++.++++|+..+.+++...||.|.- ..|
T Consensus 21 ~~~~~~Ln~~LA~~~~l~~k~~~~hW~v~G--~~f~~lH~~lee~~~~~~~~~D~iAERi~~lGg~p~~t~~e~~~~s~i 98 (162)
T PRK09448 21 KATIELLNQQLAQFIDLSLITKQAHWNMKG--ANFIAVHEMLDGFRTALEDHLDTMAERAVQLGGVALGTTQVVASKTPL 98 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccC--CCHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCCCCHHHHHHhCCC
Confidence 568899999999999999999998888887 4789999999999999999999999999999999852 223
Q ss_pred cC-CCccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHH
Q 021703 165 LM-PLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYV 235 (309)
Q Consensus 165 ~~-P~~ef~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l 235 (309)
+. |.. +-+..++++..++.-..+...+++.+ .+++|+.|.+.+. .++.+..+.+-.++.++
T Consensus 99 ~e~~~~------~~~~~~~l~~l~~d~~~~~~~~r~~i---~e~~D~~T~dll~-~~~~~~eK~~WmL~a~l 160 (162)
T PRK09448 99 KSYPLD------IHNVQDHLKALADRYAIVANDVRKAI---DEAGDEDTADIFT-AASRDLDKFLWFIEAHI 160 (162)
T ss_pred CCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHH---hhcCChhHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 33 222 12467899999999899999999888 7789999999999 89999999988888765
No 24
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=98.43 E-value=1.8e-05 Score=69.32 Aligned_cols=140 Identities=16% Similarity=0.212 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-----eccccCC
Q 021703 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK-----LQSILMP 167 (309)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~-----L~~I~~P 167 (309)
+++.+.|-+....|+.+.|-|..++..... ..=.|...|..+.-.|-+.|++.+.+++-..||.+- |.+|..=
T Consensus 16 ~kli~~Llka~AaE~tt~YYYtilr~~l~G--le~e~~keiae~Ar~E~r~H~e~i~~Ri~elg~~~Prd~~~l~dISgC 93 (172)
T COG2406 16 DKLIELLLKAAAAEWTTYYYYTILRYALKG--LEGEGIKEIAEEAREEDRKHFELIAPRIYELGGDLPRDMKKLHDISGC 93 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHhhcCC
Confidence 567788888899999999999999886654 233444455555555667799999999999999863 4444321
Q ss_pred CccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHH
Q 021703 168 LSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVA 236 (309)
Q Consensus 168 ~~ef~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~ 236 (309)
+.-+=..+|.|+-+.++.+++.|+.....+.++.++.. .+|+.|.+.-+ .+|+|+++|..++..++.
T Consensus 94 ~~a~LPedp~D~~~~l~vlv~AE~CAir~ykeic~~T~-GkDprTyeLa~-~IL~eEi~hr~~~~~ll~ 160 (172)
T COG2406 94 KPAYLPEDPYDIDEILAVLVKAERCAIRAYKEICNLTA-GKDPRTYELAE-AILREEIEHRTWFLELLG 160 (172)
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHcccc-CCCcchHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 00011124568999999999999999999999988874 69999999999 999999999999987654
No 25
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=98.26 E-value=1.3e-05 Score=67.00 Aligned_cols=121 Identities=16% Similarity=0.103 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCCc--Cc
Q 021703 98 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDH--AE 175 (309)
Q Consensus 98 aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~ef~~--~e 175 (309)
.+|+.+..|..+..+|..+|....+ +...+.|...|++|++|++.+-++...+|+.+. .+.....+.. ..
T Consensus 2 ~~~~~~~~E~~~~~~Y~~la~~~~~-----~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 73 (125)
T cd01044 2 RLRKFQKDEITEAAIYRKLAKREKD-----PENREILLKLAEDERRHAEFWKKFLGKRGVPPP---RPKLKIFFYKLLAR 73 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---CccHHHHHHHHHHH
Confidence 4789999999999999999998765 348999999999999999999999999998875 1100000000 00
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHH
Q 021703 176 KGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVA 236 (309)
Q Consensus 176 ~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~ 236 (309)
..++..+++.+...|+.....|.++... ...++ .++.|+.+|++.|.+++.
T Consensus 74 ~~g~~~~l~~~~~~E~~ai~~Y~~~~~~---------~~~~~-~Ii~dE~~H~~~L~~~~~ 124 (125)
T cd01044 74 IFGPTFVLKLLERGEERAIEKYDRLLEE---------RPELK-EIIADELEHEEVLIALLD 124 (125)
T ss_pred HHhHHHHHHHHHHhHHhhHhhHHhhhhh---------hHHHH-HHHHHHHHHHHHHHHhhh
Confidence 1134568888889999999999988776 44667 799999999999987764
No 26
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.00012 Score=65.52 Aligned_cols=141 Identities=18% Similarity=0.166 Sum_probs=113.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec--------
Q 021703 91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ-------- 162 (309)
Q Consensus 91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~-------- 162 (309)
....++++|+..|..|..|...|..+|..+++. -+.+.|...+.+|++|..+|-+.+.+++++..-.
T Consensus 21 ~~~~~~e~L~~Ai~~E~eA~~fY~~lae~~~~~-----~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~ 95 (176)
T COG1633 21 KELSIEELLAIAIRGELEAIKFYEELAERIEDE-----EIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIE 95 (176)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchh
Confidence 344789999999999999999999999999985 3899999999999999999999999999877211
Q ss_pred -cccCCCcc---CCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 021703 163 -SILMPLSE---FDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (309)
Q Consensus 163 -~I~~P~~e---f~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~L 238 (309)
.+-.+... +... .+.+++++.|...|+...+-|..+.... .|......+. +.+++.-.|...+...++.+
T Consensus 96 ~~~~~~~~~~~~~~~~--~~~~~~I~~a~~~E~~t~~~Y~~~~~~~---~~~~~~~~~~-~~a~~E~~H~~~l~~~~~~~ 169 (176)
T COG1633 96 SEILEYLQPGKEMEKS--VSYLEAIEAAMEAEKDTIEFYEELLDEL---VNEEAKKLFK-TIADDEKGHASGLLSLYNRL 169 (176)
T ss_pred hhhccccCcccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHc---cCHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 01111111 1111 3789999999999999999999887755 5677777888 88999999999998888877
Q ss_pred hhcc
Q 021703 239 RRVG 242 (309)
Q Consensus 239 rrvG 242 (309)
.+.+
T Consensus 170 ~~~~ 173 (176)
T COG1633 170 TSTG 173 (176)
T ss_pred hccc
Confidence 7654
No 27
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=98.10 E-value=0.00027 Score=62.40 Aligned_cols=133 Identities=17% Similarity=0.115 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee--------eccc
Q 021703 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK--------LQSI 164 (309)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~--------L~~I 164 (309)
.++.+.||+++..=+......+...-+-.. ...--+..+|.++.++-.+|...+.+++...||.|. ...|
T Consensus 14 ~~~~~~Ln~~lAd~~~Ly~k~~~~HWnV~G--~~F~~lHe~~ee~y~el~~~~DeiAERi~~LGg~p~~t~~~~~~~s~i 91 (156)
T COG0783 14 KKIAEALNQLLADLYVLYLKTHNYHWNVKG--PNFFALHEKLEELYEELAEHVDEIAERIRALGGVPLGTLSEYLKLSSI 91 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccceeC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccHHHHHHhCCC
Confidence 678888998886544433333322222222 345557799999999999999999999999999875 2223
Q ss_pred cCCCccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHH
Q 021703 165 LMPLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEY 234 (309)
Q Consensus 165 ~~P~~ef~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~ 234 (309)
+..+.+ .++.++++...+-.+.+.+.+++.+.+|.+.+|..|.+++. ..+.+..|.+=.++-+
T Consensus 92 ke~~~~------~~~~~~l~~l~~~~~~l~~~~r~~~~~a~e~gD~~Tadl~~-~~~~~~EK~~Wml~a~ 154 (156)
T COG0783 92 KEEPGD------YTAREMLKELVEDYEYLIKELRKGIELADEAGDEVTADLLT-DIIRELEKTLWMLRAT 154 (156)
T ss_pred cccCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHH-HHHHHHHHHHHHHHHh
Confidence 333221 46899999999999999999999999999999999999999 8898888887666544
No 28
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.91 E-value=0.00041 Score=76.39 Aligned_cols=139 Identities=11% Similarity=0.081 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccC-
Q 021703 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEF- 171 (309)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~ef- 171 (309)
+...++|--.|.+|-..--.|..+|.-.. =+.+.++|...|++|++|++.|.+...+--.. .-.....+...+
T Consensus 859 ~~~~eil~~Ai~mE~~g~~FY~~~A~~a~-----~~~~K~lF~~LA~eE~~H~~~l~~~~~~~~~~-~~~~~~~~~~~~~ 932 (1006)
T PRK12775 859 AAALEAIRTAFEIELGGMAFYARAAKETS-----DPVLKELFLKFAGMEQEHMATLARRYHAAAPS-PTEGFKIERAAIM 932 (1006)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-cccccccchhhhh
Confidence 56688999999999999999999998654 46799999999999999999998776431000 000000000000
Q ss_pred C--cCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChH-HHHHhHHHhHHHHHHHHHHHHHHHHHHhhc
Q 021703 172 D--HAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQ-LADFVESKYLHEQVEAIKKISEYVAQLRRV 241 (309)
Q Consensus 172 ~--~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~-t~dFLE~~FL~EQvE~Ik~L~d~l~~Lrrv 241 (309)
. ...+.+..++++.|+..|+...+-|.++.+.+ .|.. ...+++ .+.+|+-+|++.|.++++.++.-
T Consensus 933 ~~~~~~~~~~~~al~lAm~~Ekdai~fY~~la~~~---~d~e~~k~l~~-~LA~EEk~Hl~~L~~~~d~~~~~ 1001 (1006)
T PRK12775 933 AGVKGRPDDPGNLFRIAIEFERRAVKFFKERVAET---PDGSVERQLYK-ELAAEEREHVALLTTEFERWKQG 1001 (1006)
T ss_pred hhhccccCCHHHHHHHHHHHHHHHHHHHHHHHhhC---CChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcc
Confidence 0 01134689999999999999999999887654 6775 688999 99999999999999999999863
No 29
>PF13668 Ferritin_2: Ferritin-like domain
Probab=97.69 E-value=0.0045 Score=51.89 Aligned_cols=131 Identities=17% Similarity=0.193 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcC---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCC
Q 021703 96 EAAINEQINVEYNVSYVYHAMFAYFDRD---NVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFD 172 (309)
Q Consensus 96 e~aLNeQIn~EL~ASy~YlsMAayFd~d---~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~ef~ 172 (309)
.+.||-.++.|+...-.|..-+.-+..+ ..-=+....+|++.+..|..|+..|-+.+. |+++. +.|..+|.
T Consensus 3 ~~iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~~----~~~~~~~~ 76 (137)
T PF13668_consen 3 LDILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQEIADQEQGHVDFLQAALE--GGRPV----PPPAYDFP 76 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCC----CCCccccc
Confidence 3679999999999999999888754211 012345678999999999999999998887 76663 45555553
Q ss_pred cCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHH
Q 021703 173 HAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVA 236 (309)
Q Consensus 173 ~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~ 236 (309)
-..+.+....+..|+..|......|..+.... .|+.+...+- .++..+.+|...++.++.
T Consensus 77 ~~~~~~~~~~L~~A~~~E~~~~~~Y~g~~~~~---~~~~~~~~~~-~i~~~Ea~H~~~ir~ll~ 136 (137)
T PF13668_consen 77 FDPFTDDASFLRLAYTLEDVGVSAYKGAAPQI---EDPELKALAA-SIAGVEARHAAWIRNLLG 136 (137)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 34556899999999999999999999888755 5888888888 899999999999987764
No 30
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=97.59 E-value=0.0024 Score=56.96 Aligned_cols=125 Identities=15% Similarity=0.153 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCCc
Q 021703 94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDH 173 (309)
Q Consensus 94 e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~ef~~ 173 (309)
..++-|-+...-|=.+-..|+.||...++. |++.+|+.|+..|.+|..||..+.+-+.+.+ .+
T Consensus 4 ~t~~~L~~aF~GEs~a~~rY~~~A~~A~~e--G~~~va~lfr~iA~~E~~HA~~~~~~l~~~~---------~~------ 66 (166)
T COG1592 4 ETEENLRKAFAGESMAVMRYLIFAKVAEEE--GYPEIARLFRAIAEAEAVHAKNHLKLLGKLL---------LV------ 66 (166)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------cc------
Confidence 456677777788889999999999999995 9999999999999999999999998887765 11
Q ss_pred CccCcHHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 021703 174 AEKGDALYAMELTLSLEKL-TNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (309)
Q Consensus 174 ~e~~d~lea~E~AL~lEk~-vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~L 238 (309)
+++..+-++.+++-|.. .++.+-.....|...++-...++++ +-...+-.|.+.+...++.+
T Consensus 67 --~~~~~eNl~~aieGE~~e~~emyp~~ae~A~~~g~~~~a~~f~-~~~~~Ek~H~~~~~~~Le~~ 129 (166)
T COG1592 67 --LGDTRENLEEAIEGETYEITEMYPVFAEVAEEEGFKEAARSFR-AAAKAEKRHAEMFRGLLERL 129 (166)
T ss_pred --cccHHHHHHHHHccchHHHHHhChHHHHHHHHcCcHHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence 25678888889998875 4555558899999999888888898 78888889999999888877
No 31
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=97.23 E-value=0.011 Score=52.65 Aligned_cols=123 Identities=18% Similarity=0.213 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc-ccCCCccCCc---CccCcH
Q 021703 104 NVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQS-ILMPLSEFDH---AEKGDA 179 (309)
Q Consensus 104 n~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~-I~~P~~ef~~---~e~~d~ 179 (309)
.-|+.|..+|......+.+ +.+..++++.+.+|.+|-..+-+.+..+|++|++-. +=. -..|-- ......
T Consensus 10 AGE~gA~~IY~gQ~~~~~~-----~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW~-~~gf~lG~~tal~G~ 83 (165)
T cd01042 10 AGEVGAVRIYRGQLAVARD-----PAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLWY-VAGFALGALTALLGK 83 (165)
T ss_pred cchHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHH-HHHHHHHHHHHhhCh
Confidence 3588999999999888764 889999999999999999999999999999998532 100 000000 000123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHH
Q 021703 180 LYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISE 233 (309)
Q Consensus 180 lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d 233 (309)
.-+|-..-+.|+.|...|++-.+.-....|..+.+.|+ .|.+|+.+|-+...+
T Consensus 84 ~~a~~~~~avE~~V~~Hy~~ql~~L~~~~d~~l~~~l~-~~r~DE~~H~d~A~~ 136 (165)
T cd01042 84 KAAMACTAAVETVVEEHYNDQLRELPAQPDKELRAIIE-QFRDDELEHADIAEE 136 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 45678888999999999998776655445999999999 999999999887653
No 32
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=96.46 E-value=0.12 Score=44.45 Aligned_cols=127 Identities=12% Similarity=0.107 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccC---------
Q 021703 96 EAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILM--------- 166 (309)
Q Consensus 96 e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~--------- 166 (309)
+..||+.|...+-+-.-|-..+.-.+ -|.+..+|.+.+.+-..|+..|-.++...||.|.-..-.+
T Consensus 2 i~~Ln~Lie~~~D~~~gY~~aae~v~-----~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~gs~~g~lhr~w~~ 76 (139)
T TIGR02284 2 IHSLNDLIEISIDGKDGFEESAEEVK-----DPELATLFRRIAGEKSAIVSELQQVVASLGGKPEDHGSMVGSLHQFWGK 76 (139)
T ss_pred hHHHHHHHHHcccHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 57899999999999999999988654 4679999999999999999999999999999886322111
Q ss_pred CCccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 021703 167 PLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQ 237 (309)
Q Consensus 167 P~~ef~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~ 237 (309)
...-|.. ++-..+++.+..-|..+.+.|.+..+-. .-++.+...|+ .|...++..-+.+..
T Consensus 77 lks~~~~---~~d~aiL~~~e~gEd~~~~~y~~aL~~~--~l~~~~r~~l~-----~q~~~i~~~~d~i~~ 137 (139)
T TIGR02284 77 IRATLTP---NDDYVVLEEAERGEDRAKKAYDETLADQ--DTPAAARDVAL-----RQYPGVRACHDVIRA 137 (139)
T ss_pred HHHHHcC---CChHHHHHHHHHhHHHHHHHHHHHHhcC--CCChHHHHHHH-----HHHHHHHHHHHHHHh
Confidence 0011110 2345577888888988888888776532 25677775555 555555555444443
No 33
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=96.25 E-value=0.25 Score=44.35 Aligned_cols=131 Identities=18% Similarity=0.196 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec-cccCCCccCC--
Q 021703 96 EAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ-SILMPLSEFD-- 172 (309)
Q Consensus 96 e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~-~I~~P~~ef~-- 172 (309)
...|.---.-|+.|-.+|..-...+.. .+.+..++++..++|.+|-..+-+.+.++|.+|.+- ++=.. ..|-
T Consensus 4 ~r~lRVdHAGE~~A~~iY~gQ~~~~~~----~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l~Plw~~-~g~~LG 78 (172)
T PF03232_consen 4 ARILRVDHAGEVGAVRIYRGQLAVARR----DPELRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLLNPLWYV-AGFALG 78 (172)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHHHHHHHH-HHHHHH
Confidence 344444456799999999999988874 678999999999999999999999999999998742 11100 0000
Q ss_pred -cCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHh---hCCChHHHHHhHHHhHHHHHHHHHHHH
Q 021703 173 -HAEKGDALYAMELTLSLEKLTNEKLLNLHKVAN---KNHDVQLADFVESKYLHEQVEAIKKIS 232 (309)
Q Consensus 173 -~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~---~~~D~~t~dFLE~~FL~EQvE~Ik~L~ 232 (309)
-.-.....-+|...-+.|..+.+.|++-.+.-. ...|..+.+.|+ .|-+|+.+|-+...
T Consensus 79 ~~tal~G~~~~~a~t~avE~~V~~Hy~~Ql~~L~~~~~~~d~~l~~~i~-~~r~DE~~H~d~A~ 141 (172)
T PF03232_consen 79 ALTALLGDKAAMACTAAVETVVEEHYNDQLRELPAMGEEEDPELRAIIE-QFRDDELEHRDTAI 141 (172)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH-HHHHHHHHHHHHHH
Confidence 000002345677778889999999988776665 378999999999 99999999987764
No 34
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=96.12 E-value=0.38 Score=40.97 Aligned_cols=121 Identities=17% Similarity=0.176 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccC-----
Q 021703 97 AAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEF----- 171 (309)
Q Consensus 97 ~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~ef----- 171 (309)
++|.-.+..|..+--+|..++.-+. .-+-|...+.+|.+|...+-..+.+.|...... +.+..-|
T Consensus 3 ~~L~~Ale~Ek~a~~~Y~~~~~k~~--------~~~~F~~la~~E~~H~~~l~~L~~~~~~~~p~~--~~~~~~f~~~~~ 72 (135)
T cd01048 3 AALLYALEEEKLARDVYLALYEKFG--------GLRPFSNIAESEQRHMDALKTLLERYGLPDPVD--PFSGGVFTNPQY 72 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--------CcchHHHHHHHHHHHHHHHHHHHHHcCCCCCCC--ccccccccchhH
Confidence 5678889999999999999998763 456788899999999999988888777442111 1111111
Q ss_pred C---cCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHH
Q 021703 172 D---HAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKI 231 (309)
Q Consensus 172 ~---~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L 231 (309)
+ .....+..+|++.+...|+.....|.++.+-+ .|..+...++ ....+.-+|..-+
T Consensus 73 ~~l~~~~~~s~~~al~~g~~~E~~~i~~ye~~~~~~---~d~d~k~v~~-~L~~~e~~H~~~f 131 (135)
T cd01048 73 NQLVEQGPKSLQDALEVGVLIEELDIADYDRLLERT---QNPDIRDVFE-NLQAASRNHHLPF 131 (135)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhc---ccHHHHHHHH-HHHHHHHHHHHHH
Confidence 0 01224789999999999999999888887755 6788888888 7777777666543
No 35
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=96.06 E-value=0.43 Score=46.33 Aligned_cols=150 Identities=20% Similarity=0.238 Sum_probs=110.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCC-
Q 021703 90 KFTDDCEAAINEQINVEYNVSYVYHAM-FAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMP- 167 (309)
Q Consensus 90 ~~s~e~e~aLNeQIn~EL~ASy~YlsM-AayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P- 167 (309)
..++....+|---.-.| .+.=.|+++ +.+|..++..-+++++|...-..||-.|+.-|-+|+..- |++....+...
T Consensus 55 ~L~~~~~~~l~~~~itE-d~LP~Y~~~L~~~f~~~~~~~~~w~~w~~~WtaEE~rHg~aL~~YL~~s-g~vdp~~le~~~ 132 (297)
T cd01050 55 ELPDDARVALVGNLLTE-EALPTYHSMLNRLFGLDDESPTAWARWVRRWTAEENRHGDLLNKYLYLT-GRVDPRALERTR 132 (297)
T ss_pred cCCHHHHHHHHHHHHHh-hccHHHHHHHHHHcCcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 46777777766666666 334445544 445544322447899999999999999999999999884 55654444321
Q ss_pred ----CccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhccC
Q 021703 168 ----LSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQ 243 (309)
Q Consensus 168 ----~~ef~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~LrrvG~ 243 (309)
...|+.....++...|-...-.|+-..-.++++.+.|. .+||.+...+. .+-.++..|.+-..+++..+-....
T Consensus 133 ~~~~~~G~~~~~~~~~~~~~~y~~fqE~aT~v~y~nl~~~a~-~gdPvL~~i~~-~IA~DE~rH~~fy~~~v~~~le~dp 210 (297)
T cd01050 133 QYLIGSGFDPGTDNSPYRGFVYTSFQELATRISHRNTARLAG-AGDPVLAKLLG-RIAADEARHEAFYRDIVEALFELDP 210 (297)
T ss_pred HHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 11233211135667888888899999999999999998 89999999999 9999999999999999988765543
No 36
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=95.58 E-value=1.1 Score=44.28 Aligned_cols=148 Identities=18% Similarity=0.231 Sum_probs=100.8
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCcCc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccc
Q 021703 89 HKFTDDCEAAINEQINVEYNVSYVYHA-MFAYFDRDN---VALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSI 164 (309)
Q Consensus 89 q~~s~e~e~aLNeQIn~EL~ASy~Yls-MAayFd~d~---vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I 164 (309)
..++++...+|---+-.|=+..- |++ ++.+|..++ ..-.+.++|...-..||-.||.-|-+|+...| .|....+
T Consensus 56 ~~Lpd~~~~alv~~llTEd~LPs-Y~~~l~~~~~~~~~~ga~~~~W~~wv~~WTAEEnRHg~~L~~YL~vsg-~vDp~~l 133 (330)
T PF03405_consen 56 STLPDDARVALVGNLLTEDNLPS-YHRELATLFGVRDEDGASDSPWGRWVGRWTAEENRHGDALRDYLYVSG-RVDPVAL 133 (330)
T ss_dssp HTS-HHHHHHHHHHHHHHHTHHH-HHHHHTTSTTT--SSSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SS-CCCC
T ss_pred ccCCHHHHHHHHHHHHhhhhhhH-HHHHHHhhcCccccCCCCCCcHHHHcccccccccccHHHHHHHHHHhC-CCCHHHH
Confidence 45777776666555555544443 444 344444311 11446899999999999999999999997755 5555444
Q ss_pred cCCC-----ccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHh
Q 021703 165 LMPL-----SEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLR 239 (309)
Q Consensus 165 ~~P~-----~ef~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~Lr 239 (309)
..-. ..|+.....++...|--..-.|+.+.-+..++.++|.+.+|+.+...+. .+-.++..|.....+++..+=
T Consensus 134 E~~r~~~i~~G~~~~~~~~p~~~~vYtsfQE~AT~vsh~n~~~~a~~~~DpvL~~il~-~IA~DE~rH~~fy~~iv~~~l 212 (330)
T PF03405_consen 134 ERTRMYLITAGFDPGFESDPYLGFVYTSFQERATQVSHRNTGRLAKQAGDPVLAQILG-RIAADEARHEAFYRNIVEAYL 212 (330)
T ss_dssp CHCCHHHHHH----S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHH-HHHhhHHHHHHHHHHHHHHHH
Confidence 4321 1233221235778888888899999999999999999999999988888 788888888887777776543
No 37
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=94.87 E-value=0.23 Score=40.15 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee
Q 021703 94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL 161 (309)
Q Consensus 94 e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L 161 (309)
+.+..||+.|.....+.-.|-..+.-+++ +.+..+|.+.+.+...|+..|-.++...||.|.-
T Consensus 1 ~~i~~Ln~Ll~~~~d~~~~Y~~a~~~~~~-----~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~ 63 (111)
T PF09537_consen 1 ETIEALNDLLKGLHDGIEGYEKAAEKAED-----PELKSLFQEFAQERQQHAEELQAEIQELGGEPEE 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--S-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCc
Confidence 46789999999999999999999998875 6789999999999999999999999999999863
No 38
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=93.23 E-value=6.4 Score=35.82 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCCc
Q 021703 94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDH 173 (309)
Q Consensus 94 e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~ef~~ 173 (309)
+....|-+|.+.|..|+-.=++|-..|-. .+++..-+-..+.||+.|-++.++-+.+||- .+.++.+++-
T Consensus 18 nl~~iL~DHA~CE~KAA~~A~~L~~rY~~----~~~Lv~~m~~LarEEL~HFeqV~~im~~Rgi--~l~~~~~~~Y---- 87 (180)
T cd07910 18 NLDEILIDHAHCEKKAASSAMSLIFRYPE----KPELVEAMSDLAREELQHFEQVLKIMKKRGI--PLGPDSKDPY---- 87 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC----cHhHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCCCCHH----
Confidence 66788999999999999988888665554 5889999999999999999999999999994 4444444431
Q ss_pred CccCcHHHHHHHHHHH------HHHHHHHH------HHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhc
Q 021703 174 AEKGDALYAMELTLSL------EKLTNEKL------LNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRV 241 (309)
Q Consensus 174 ~e~~d~lea~E~AL~l------Ek~vt~~L------~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~Lrrv 241 (309)
+-..++..-.. .+.+...+ .....+|...-|..+..|-. .++..+..|- ++|+.--+..
T Consensus 88 -----a~~L~k~vR~~~p~~llD~Llv~alIEARScERF~lLa~~l~D~eL~~FY~-~Ll~SEarHy---~~yl~LA~~y 158 (180)
T cd07910 88 -----ASGLRKLVRKGEPERLLDRLLVAALIEARSCERFALLAPALPDPELKKFYR-GLLESEARHY---ELFLDLARKY 158 (180)
T ss_pred -----HHHHHHHcccCChHHHHHHHHHHHHHHHHhHHHHHHHhccCCCHHHHHHHH-HHHHHHhhHH---HHHHHHHHHH
Confidence 11111111111 11111111 22334454457999999988 7777766665 4555555665
Q ss_pred cC
Q 021703 242 GQ 243 (309)
Q Consensus 242 G~ 243 (309)
++
T Consensus 159 ~~ 160 (180)
T cd07910 159 FD 160 (180)
T ss_pred cC
Confidence 54
No 39
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=92.45 E-value=1.4 Score=41.95 Aligned_cols=143 Identities=15% Similarity=0.130 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCC
Q 021703 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFD 172 (309)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~ef~ 172 (309)
+.-..+|....+.|++|...++-..+-|.. +.-. .|-.=|.+.+.||-.|...+.+++...|. ...+.+...--|+
T Consensus 65 ~~r~~llHaiAhIE~~AIdLa~Da~~RF~~-~lP~-~f~~D~~~va~dEarHf~ll~~rL~~lG~--~yGd~P~h~gLw~ 140 (253)
T PF04305_consen 65 EGRAALLHAIAHIELNAIDLALDAIYRFHP-NLPR-EFYDDWLRVADDEARHFRLLRERLEELGS--DYGDLPAHDGLWE 140 (253)
T ss_pred hhHHHHHHHhcchHHHHHHHHHHHHHHHhc-cCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCcchhhHHHH
Confidence 445678888889999999999999999922 1222 24444456899999999999999999995 4455554432111
Q ss_pred cCcc--CcHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhh
Q 021703 173 HAEK--GDALYAME-LTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRR 240 (309)
Q Consensus 173 ~~e~--~d~lea~E-~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~Lrr 240 (309)
..+. .|++.=|. .-+-+|..--..--.+.+...+.+|..++..|+ -++.|++.|++.=...+..+..
T Consensus 141 ~~~~t~~dl~~R~A~vp~~~EArGLD~~p~~~~k~~~~gD~~sa~iL~-~I~~DEi~HV~~G~rWf~~~c~ 210 (253)
T PF04305_consen 141 AAEQTAHDLLARMALVPRVLEARGLDVTPFIIEKFRSAGDEESAAILE-IILRDEIGHVAIGNRWFRYLCE 210 (253)
T ss_pred HHHHhccCHHHHHHHHHHHHHhhCCCCCHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHH
Confidence 1000 01222111 112344443333444555566789999999999 9999999999876666665554
No 40
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=92.41 E-value=7 Score=34.17 Aligned_cols=137 Identities=17% Similarity=0.148 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccC------
Q 021703 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILM------ 166 (309)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~------ 166 (309)
+-....|.+....|-++.-.+-.|+.-..+ |.+..-|.++..+-++|.++|-+-+...|+.|.-...+.
T Consensus 4 ~~~~~~L~d~y~aE~q~~~~l~~~~~~a~~-----~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~~~c~~~~gl~~ 78 (159)
T PF05974_consen 4 DLFIDELRDLYSAEKQLLKALPKLAEAASS-----PELKAALEEHLEETEQQIERLEQIFEALGADPSAEKCDAMEGLVA 78 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-SS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-CHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccCcchHHHHHHH
Confidence 345778899999999999999999976653 778999999999999999999999999999886322100
Q ss_pred ----CCccCCcCccCcHHHH--HHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 021703 167 ----PLSEFDHAEKGDALYA--MELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQ 237 (309)
Q Consensus 167 ----P~~ef~~~e~~d~lea--~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~ 237 (309)
--.... ..+.+.++ +..+...|..=...|..|...|..-++....+-|+ .-|+|..+.-+++..+...
T Consensus 79 e~~~~~~~~~--~d~~~~D~~li~a~q~~ehyeIA~Y~tL~~~A~~lG~~e~a~lL~-~~L~EE~~~~~~L~~~a~~ 152 (159)
T PF05974_consen 79 EAQELIEEFA--EDPAVKDAALIAAAQKVEHYEIAAYGTLIALAKQLGDEEAAQLLE-QNLDEEEAADEKLTQLAES 152 (159)
T ss_dssp HHHHHHHT-S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHH-HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhccc--CCchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 000000 00123333 35778899999999999999999999999999999 8899988888888877653
No 41
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=92.21 E-value=2.5 Score=40.88 Aligned_cols=143 Identities=13% Similarity=0.133 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccc---
Q 021703 92 TDDCEAAINEQIN---VEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIL--- 165 (309)
Q Consensus 92 s~e~e~aLNeQIn---~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~--- 165 (309)
++..-.+|-+|+. -|+.++.+|+..+.-|.... .+...+.+.+-||..|.|-+..-+++.-+......++
T Consensus 18 DP~~A~~LqeqlGG~~GElsaamqYl~Q~~~~~~~~----~~kdlL~dIatEEl~H~Emvat~I~~Ll~g~~~~~~~~~~ 93 (283)
T PF05067_consen 18 DPRFAKLLQEQLGGPFGELSAAMQYLFQSFNMRGPE----KYKDLLMDIATEELGHVEMVATMIAQLLKGAPPEEQEEAA 93 (283)
T ss_dssp -HHHHHHHCHHHHSTTSHHHHHHHHHHHHHH-SSTT----TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSSHHHHH
T ss_pred CHHHHHHHHHHhcCCcchHHHHHHHHHHhhcCCCch----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhhhc
Confidence 4566777888874 69999999999999998642 2458899999999999999987776654432211110
Q ss_pred --CC-----------------------C-c---cCC---cCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHH
Q 021703 166 --MP-----------------------L-S---EFD---HAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLA 213 (309)
Q Consensus 166 --~P-----------------------~-~---ef~---~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~ 213 (309)
.| . + -|+ -...|+++.-|...+..|......+.+|++.+ .|+...
T Consensus 94 ~~~p~~~~~~~~~n~~h~i~~g~g~~p~ds~G~PWt~~yv~~sGdl~aDL~~NiaAE~~AR~~yerL~~mT---dDpgvk 170 (283)
T PF05067_consen 94 PGDPLLAAIMGGGNPQHYIVHGGGAYPVDSNGVPWTAAYVQASGDLIADLRSNIAAEQRARLQYERLYEMT---DDPGVK 170 (283)
T ss_dssp GGGTTTGGGGCSS-SHHHHTSSSS--SB-TTS-B-BGGG----S-HHHHHHHHHHHHHHHHHHHHHHHTT------HHHH
T ss_pred ccchHHHHhhcCCCchhhhcCCCCCCccCCCCCcccchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhc---CCccHH
Confidence 00 0 0 011 01346899999999999999999999999877 799999
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHhhcc
Q 021703 214 DFVESKYLHEQVEAIKKISEYVAQLRRVG 242 (309)
Q Consensus 214 dFLE~~FL~EQvE~Ik~L~d~l~~LrrvG 242 (309)
+.|. ..+...+-|...+..-+..|...+
T Consensus 171 d~L~-FLl~Re~vH~~~f~~ALe~l~~~~ 198 (283)
T PF05067_consen 171 DMLS-FLLAREIVHQQQFGKALEELQENF 198 (283)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999 777778888888888888876554
No 42
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=89.50 E-value=2.9 Score=34.99 Aligned_cols=62 Identities=13% Similarity=0.097 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhh
Q 021703 178 DALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRR 240 (309)
Q Consensus 178 d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~Lrr 240 (309)
.+.+.+...++.|......++..|..+...+.+.+..+++ ..-.|..+|++.+.+.+..|.-
T Consensus 6 ~~~~~Ln~~la~e~~~~~~y~~~~~~~~g~~f~~l~~~~~-~~~~ee~~Had~laEri~~lGg 67 (148)
T cd01052 6 ELIELLNKAFADEWLAYYYYTILAKHVKGPEGEGIKEELE-EAAEEELNHAELLAERIYELGG 67 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCC
Confidence 4678999999999999999999999999889999999999 8899999999999988887653
No 43
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=89.33 E-value=17 Score=33.60 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCC----cCccCcH
Q 021703 104 NVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFD----HAEKGDA 179 (309)
Q Consensus 104 n~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~ef~----~~e~~d~ 179 (309)
.-|+.|-++|.--+.+....+ +.. -.++.++||-.|--.+-+++.+||.+|.+-.----...|- ..- -+.
T Consensus 51 aGE~~A~~iY~GQ~~~~r~~~---~R~--~l~em~d~E~~HL~~f~~~l~e~~vRPsll~P~W~~~~FalGA~a~L-lgd 124 (204)
T COG2941 51 AGELGAQAIYQGQAAVARSPE---PRI--QLKEMADEEIDHLAWFEQRLLELGVRPSLLNPLWYAAAFALGAGAGL-LGD 124 (204)
T ss_pred hhHHHHHHHHhhHHHHHcCcc---hHH--HHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHhh-ccc
Confidence 359999999999998887643 222 7899999999999999999999999997532000000000 000 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHH
Q 021703 180 LYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKIS 232 (309)
Q Consensus 180 lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~ 232 (309)
.-+|-..-+.|..+-+.|..=...- .+.|..+...|. .|=.|+++|.+..-
T Consensus 125 k~am~~teavE~vIe~Hy~~ql~~L-~~~d~~lr~~l~-qfR~DE~eH~d~Ai 175 (204)
T COG2941 125 KAAMGFTEAVETVIEKHYDGQLREL-PNLDAELRAILA-QFRDDELEHLDNAI 175 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHH-HHhhHHHHHHHHHH
Confidence 2244444455555555554422222 348889999999 89999988877653
No 44
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=89.09 E-value=2.5 Score=37.96 Aligned_cols=61 Identities=11% Similarity=0.123 Sum_probs=54.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhc
Q 021703 177 GDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRV 241 (309)
Q Consensus 177 ~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~Lrrv 241 (309)
.++.+++..|+..|+....-|.++++.+ .|..+...++ ++..++.+|.+.+..++.++..-
T Consensus 23 ~~~~e~L~~Ai~~E~eA~~fY~~lae~~---~~~~~rk~~~-~la~eE~~H~~~f~~l~~~~~~~ 83 (176)
T COG1633 23 LSIEELLAIAIRGELEAIKFYEELAERI---EDEEIRKLFE-DLADEEMRHLRKFEKLLEKLTPK 83 (176)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhc---CCHhHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC
Confidence 3689999999999999999999998877 6778999999 99999999999999999887543
No 45
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=88.86 E-value=2.2 Score=34.25 Aligned_cols=56 Identities=16% Similarity=0.244 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 021703 181 YAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (309)
Q Consensus 181 ea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~L 238 (309)
++++.|+..|......|..+.+.+...+ +.+..++. .+-.++.+|.+.+..++.++
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~~~~~~~-p~~~~~f~-~lA~~E~~H~~~~~~l~~~~ 56 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAEKAKDEG-PELKELFR-RLAEEEQEHAKFLEKLLRKL 56 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH-HHHHHHHHHHHHHHHHHCHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhcc-cHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence 4788999999999999999999998878 99999999 99999999999999888765
No 46
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=87.76 E-value=4.1 Score=34.27 Aligned_cols=61 Identities=16% Similarity=0.098 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHh
Q 021703 178 DALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLR 239 (309)
Q Consensus 178 d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~Lr 239 (309)
...+.+..++..|......|...+..+...+-+.+.++++ ..-.|..+|++.+.+++..+.
T Consensus 5 ~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~~~~~~~~~~f~-~~a~ee~~Ha~~lae~i~~lG 65 (153)
T cd00907 5 KVIEALNKALTGELTAINQYFLHARMLEDWGLEKLAERFR-KESIEEMKHADKLIERILFLE 65 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH-HHHHHHHHHHHHHHHHHHHcC
Confidence 4788999999999999999999999998888889999999 788888899999998888765
No 47
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=87.60 E-value=3 Score=33.41 Aligned_cols=54 Identities=24% Similarity=0.357 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHh
Q 021703 182 AMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLR 239 (309)
Q Consensus 182 a~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~Lr 239 (309)
+++.|+.+|+.....|..+...+ +|+....+++ .+-.++.+|.+.+...+..+.
T Consensus 2 ~l~~a~~~E~~~~~~Y~~~a~~~---~~~~~~~~~~-~la~eE~~H~~~l~~~~~~~~ 55 (139)
T cd01045 2 ILALAIKMEEEAAEFYLELAEKA---KDPELKKLFE-ELAEEEKEHAERLEELYEKLF 55 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHC---CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 67899999999999999987765 6779999999 999999999999999998875
No 48
>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]
Probab=87.44 E-value=9 Score=36.95 Aligned_cols=143 Identities=11% Similarity=0.103 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee-----cc
Q 021703 92 TDDCEAAINEQI---NVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL-----QS 163 (309)
Q Consensus 92 s~e~e~aLNeQI---n~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L-----~~ 163 (309)
++...++|.+|+ .-|+.++.+|+.-+.-|.. +++-..+.+.+.||..|-|-+..-++..-..... .+
T Consensus 18 dp~~A~~lqEqlGG~~GElsaamqYl~Q~fn~r~-----~~~~dll~DI~TEEl~HlEmvat~I~~L~~ga~~e~~~~~~ 92 (277)
T COG3546 18 NPQLAKLLQEQLGGAFGELSAAMQYLFQGFNVRD-----AKYKDLLMDIGTEELSHLEMVATMINLLNKGATGEGAEEAE 92 (277)
T ss_pred ChHHHHHHHHHhCCcchHHHHHHHHHHhhcccCc-----hHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchh
Confidence 456677888887 4799999999988876663 5688889999999999999998887766544433 11
Q ss_pred cc------------------CCCcc-----CC---cCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhH
Q 021703 164 IL------------------MPLSE-----FD---HAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVE 217 (309)
Q Consensus 164 I~------------------~P~~e-----f~---~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE 217 (309)
+. .++.+ |. -...|+++.=|...+..|......+..|++++ .|+...+.|.
T Consensus 93 l~~s~~~~~n~~h~~~~~~g~~p~dS~G~pWta~YI~~sGnliaDlr~NiaaE~~aR~~y~rLy~mt---dDpgvrd~L~ 169 (277)
T COG3546 93 LYGSGLGGMNPHHISVLLYGAGPADSAGVPWTAAYIVASGNLIADLRSNIAAEARARLQYERLYEMT---DDPGVRDTLS 169 (277)
T ss_pred hHHhhccCCCchhhhhhccCCCCcccCCCccchhhhhccCccHHHHHHHHHHHhccceeeeeeeecC---CCccHHHHHH
Confidence 10 01011 00 01335677778888888888888888888776 7999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhccC
Q 021703 218 SKYLHEQVEAIKKISEYVAQLRRVGQ 243 (309)
Q Consensus 218 ~~FL~EQvE~Ik~L~d~l~~LrrvG~ 243 (309)
..+...+-|...+..-|..|+..+.
T Consensus 170 -fLl~Re~~H~~~f~kAL~~l~~~~~ 194 (277)
T COG3546 170 -FLLTREIAHQNAFRKALESLENEED 194 (277)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7777788888888888888887663
No 49
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=86.74 E-value=4.4 Score=32.76 Aligned_cols=58 Identities=24% Similarity=0.273 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHh
Q 021703 181 YAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLR 239 (309)
Q Consensus 181 ea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~Lr 239 (309)
+++...+..|......+..++..+...+-+.+..|++ ...++..++.+++.+++..+.
T Consensus 2 ~~Ln~~l~~e~~~~~~y~~~~~~~~~~~~~~l~~~~~-~~a~e~~~h~~~l~e~i~~lg 59 (142)
T PF00210_consen 2 EALNEQLALELQASQQYLNMHWNFDGPNFPGLAKFFQ-DQAEEEREHADELAERILMLG 59 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHhH-HHHHHHHHHHHHHHHHHhcCC
Confidence 5788899999999999999999999888899999999 788888899988887776643
No 50
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=85.19 E-value=8.1 Score=32.26 Aligned_cols=60 Identities=20% Similarity=0.237 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021703 93 DDCEAAINEQINVEYN-VSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNK 154 (309)
Q Consensus 93 ~e~e~aLNeQIn~EL~-ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~ 154 (309)
..+.+.|...+..|.. +.-.|..++..+.. .+-...+.+|...+.+|.+|+..|-+.+..
T Consensus 72 ~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~--e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~ 132 (134)
T cd01041 72 GDTLENLKAAIAGETYEYTEMYPEFAEVAEE--EGFKEAARSFEAIAEAEKVHAERYKKALEN 132 (134)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4677889999999985 77999999999998 489999999999999999999998776543
No 51
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=83.22 E-value=6 Score=36.88 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec
Q 021703 99 INEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ 162 (309)
Q Consensus 99 LNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~ 162 (309)
|...|.+|+...-.||..+.--+.. .-...+.-.+.-+.|||-|.....+-++..||.|.+.
T Consensus 1 Lq~Ai~lE~atip~YL~a~ySi~~~--~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg~P~l~ 62 (227)
T PF12902_consen 1 LQQAIELELATIPPYLTALYSIKPG--TNEEARNLIRSVAIEEMLHLSLAANLLNALGGSPRLT 62 (227)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHBS-T--TSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred CcHHHHHHHHHHHHHHHHHcccCCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 5678999999999999777666442 2233888999999999999999999999999999886
No 52
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=82.85 E-value=8.5 Score=32.05 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHH
Q 021703 179 ALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVA 236 (309)
Q Consensus 179 ~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~ 236 (309)
..+.+..++..|......|......|+.++.+.+.+++. .--.++.+|-+.+.+++.
T Consensus 2 ~~~~L~~a~~~E~~a~~~Y~~~a~~a~~eG~~~~A~~f~-~~a~eE~~HA~~~~~~l~ 58 (123)
T cd01046 2 LEEDLEANFKGETTEVGMYLAMARVAQREGYPEVAEELK-RIAMEEAEHAARFAELLG 58 (123)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999999999999999999999 788888888888887653
No 53
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=80.70 E-value=11 Score=38.15 Aligned_cols=146 Identities=20% Similarity=0.252 Sum_probs=104.0
Q ss_pred cCHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCc--Cccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccc
Q 021703 91 FTDDCEAAI-NEQINVEYNVSYVYHAMFAYFDR--DNVA--LKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIL 165 (309)
Q Consensus 91 ~s~e~e~aL-NeQIn~EL~ASy~YlsMAayFd~--d~vg--LpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~ 165 (309)
+++.+..+| -+-|..|---+|+ .+-..++. |.-| -..-+.|-+.-..||-.|+.-|-+|+.- -|+|+...|+
T Consensus 115 Lpd~~~v~LvgdmiTEeaLPtY~--~~Ln~~~gv~d~tg~~~~~W~~Wvr~WTAEENRHgdlL~~YLyl-TgrVDm~~iE 191 (390)
T PLN00179 115 LPDDYFVVLVGDMITEEALPTYQ--TMLNTLDGVRDETGASATPWARWTRAWTAEENRHGDLLNKYLYL-SGRVDMRQIE 191 (390)
T ss_pred CChhhhhhhhhcchhhhcchHHH--HHHHHhcccccccCCCCCchhhhccccccccchHHHHHHHHHhh-ccCcCHHHHH
Confidence 555554433 4555555555544 43333332 2222 2358899999999999999999999987 5567766655
Q ss_pred CCC-----ccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhh
Q 021703 166 MPL-----SEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRR 240 (309)
Q Consensus 166 ~P~-----~ef~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~Lrr 240 (309)
... ..|+.....++...|--.--.|+...-+-.+-.++|.+.+|+.+...+. .+-.++..|..-...++..+=.
T Consensus 192 ~t~q~li~~G~d~~~~~~py~~~vYtSFQErAT~VSH~NTarlA~~~gDp~la~icg-~IAaDE~rHe~fY~~iV~~~le 270 (390)
T PLN00179 192 KTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARLAKEHGDAKLAKICG-TIAADEKRHETAYTRIVEKLFE 270 (390)
T ss_pred HHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHH-HHhccHHHHHHHHHHHHHHHHh
Confidence 421 2344222357899998888899999999999999999999999998888 8888999998888888876543
No 54
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=79.81 E-value=13 Score=28.04 Aligned_cols=53 Identities=19% Similarity=0.097 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 021703 182 AMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (309)
Q Consensus 182 a~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~L 238 (309)
++..++..|......+..++..+. |+.+...+. .+..+..+|.+.+..++..+
T Consensus 2 ~L~~~~~~E~~a~~~y~~~~~~~~---~~~~~~~~~-~~a~~E~~H~~~l~~~~~~~ 54 (130)
T cd00657 2 LLNDALAGEYAAIIAYGQLAARAP---DPDLKDELL-EIADEERRHADALAERLREL 54 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 567888999999999999988774 899999999 88999999999999988765
No 55
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=78.26 E-value=46 Score=29.10 Aligned_cols=129 Identities=16% Similarity=0.137 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccC---------
Q 021703 96 EAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILM--------- 166 (309)
Q Consensus 96 e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~--------- 166 (309)
+..|.+....|-++.-.--.|+. ....|-+..-|..+..|-++|.++|-+=...+|..|.-...+.
T Consensus 5 ~~~L~d~y~aE~Q~~~al~~m~~-----~a~~peLk~~l~~H~~eT~~qi~rLe~if~~lg~~~~~~~c~~m~gli~e~~ 79 (147)
T cd07909 5 VHELRDLYSAEKQLVKALPKMAK-----AATSEELKEAFESHLEETEGQVERLEQIFESLGEKPEGKKCKAMEGLIKEAE 79 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCcchHHHHHHHHHH
Confidence 45556666666665555555552 1368899999999999999999999999999998876332110
Q ss_pred -CCccCCcCccCcHHHHH--HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHH
Q 021703 167 -PLSEFDHAEKGDALYAM--ELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISE 233 (309)
Q Consensus 167 -P~~ef~~~e~~d~lea~--E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d 233 (309)
--.++.+ +.+.++. -.+...|..=...|..|+..|..-++....+.|+ .-|+|....-++|..
T Consensus 80 ~~~~~~~~---~~v~Da~li~aaq~vEHyEIA~YgtL~~~A~~lG~~e~a~lL~-~~L~EE~~~d~~lt~ 145 (147)
T cd07909 80 ELIEETGD---SAVLDAALIAAAQKVEHYEIAGYGTLRALAKLLGLDDAADLLQ-ETLDEEKATDRKLTD 145 (147)
T ss_pred HHHhccCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 0011111 2466776 7888999999999999999999999999999999 778777666666543
No 56
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=77.84 E-value=17 Score=29.17 Aligned_cols=78 Identities=10% Similarity=0.083 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhccC-CCCCChhhHHHHhh
Q 021703 179 ALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQ-GHGRNQNKISFLIN 257 (309)
Q Consensus 179 ~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~LrrvG~-g~G~~q~~~~~l~n 257 (309)
.+.++...+..++.....|.+..+.| +|+.+..+++ .+..+-..++..|..+|..+.--.. +.|+...+.+...+
T Consensus 2 ~i~~Ln~Ll~~~~d~~~~Y~~a~~~~---~~~~lk~~f~-~~~~~~~~~~~~L~~~i~~~Gg~p~~~gs~~g~~~r~~~~ 77 (111)
T PF09537_consen 2 TIEALNDLLKGLHDGIEGYEKAAEKA---EDPELKSLFQ-EFAQERQQHAEELQAEIQELGGEPEESGSFKGALHRAWMD 77 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----SHHHHHHHH-HHHHHHHHHHHHHHHHHHHTT--H----HHCHHHH-TTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcCcccCHHHHHHHHHHH
Confidence 45677777888888888777776655 6899999999 9999999999999988888763332 33444444444444
Q ss_pred hhc
Q 021703 258 VTN 260 (309)
Q Consensus 258 ~~~ 260 (309)
+..
T Consensus 78 ik~ 80 (111)
T PF09537_consen 78 IKS 80 (111)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 57
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=77.16 E-value=13 Score=31.73 Aligned_cols=56 Identities=13% Similarity=0.136 Sum_probs=47.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 021703 91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEY 151 (309)
Q Consensus 91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY 151 (309)
......++|...+..|-.+...|..++...++ +...+.|...+.+|.+|...|-+.
T Consensus 98 ~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~~d-----~~~r~ll~~I~~eE~~H~~~L~~~ 153 (154)
T cd07908 98 YGESIKEMLKLDIASEKAAIAKYKRQAETIKD-----PYIRALLNRIILDEKLHIKILEEL 153 (154)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34457789999999999999999999996543 678899999999999999988654
No 58
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=75.06 E-value=16 Score=30.95 Aligned_cols=60 Identities=10% Similarity=0.026 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021703 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNK 154 (309)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~ 154 (309)
..+.++|...++.|..+.-.|..++..+.. .+-+..+.||..-.++|.+|.+++-+++..
T Consensus 79 ~~~~~~l~~al~~E~~~~~~~~~l~~~A~~--~~D~~~~~~l~~~l~~q~e~~~~~~~~l~~ 138 (156)
T cd01055 79 ESLLEVFEAALEHEQKVTESINNLVDLALE--EKDYATFNFLQWFVKEQVEEEALARDILDK 138 (156)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357789999999999999999999999987 367889999999999999999888888773
No 59
>PF14530 DUF4439: Domain of unknown function (DUF4439); PDB: 2IB0_B.
Probab=72.21 E-value=63 Score=27.76 Aligned_cols=114 Identities=18% Similarity=0.155 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCCcC-cc
Q 021703 98 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHA-EK 176 (309)
Q Consensus 98 aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~ef~~~-e~ 176 (309)
+|...+..|..+.|.|=..+.+.+.+ ...--.....+-|...+.+...+..+|+.+... ...|.-+ +.
T Consensus 1 AL~~al~aE~aAvy~ygv~~a~~~~~------~r~~~~~~~~~HR~rRd~l~~~l~~~g~~~p~~-----~aaY~lP~~v 69 (131)
T PF14530_consen 1 ALQAALAAEHAAVYGYGVAAARLDGD------RRAAARAALAAHRARRDALAAALRAAGATPPPP-----EAAYQLPFPV 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-GG------GHHHHHHHHHHHHHHHHHHHHHHHHTT------------SS---SS--
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-----CCCCCCCCCC
Confidence 57788999999999999999998764 334455667777888899999999999887532 2222211 23
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHH
Q 021703 177 GDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVE 226 (309)
Q Consensus 177 ~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE 226 (309)
.|...+.+.+..+|..+...+..+. - ..|...+.|--....+--+.
T Consensus 70 ~d~~sa~~la~~lE~~~a~aw~~lv-~---a~~~~~R~~av~aL~~aA~r 115 (131)
T PF14530_consen 70 TDPASAAALAAALEDDCAAAWRALV-A---ATDPALRRFAVDALTEAAVR 115 (131)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHH-H-----SHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-h---cCChhHHHHHHHHHHHHHHH
Confidence 5789999999999999999999987 2 36778887777343333333
No 60
>PF13668 Ferritin_2: Ferritin-like domain
Probab=71.80 E-value=21 Score=29.61 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----hhCCChHHHHHhHHHhHHHHHHHHHHHHHHHH
Q 021703 180 LYAMELTLSLEKLTNEKLLNLHKVA-----NKNHDVQLADFVESKYLHEQVEAIKKISEYVA 236 (309)
Q Consensus 180 lea~E~AL~lEk~vt~~L~eL~~vA-----~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~ 236 (309)
++++..||.+|..-.+-|.....-. ....|..+.++++ .+..++..|++.+++.+.
T Consensus 3 ~~iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~E~~H~~~l~~~l~ 63 (137)
T PF13668_consen 3 LDILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQ-EIADQEQGHVDFLQAALE 63 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999887643 3468999999999 999999999999998876
No 61
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=67.93 E-value=46 Score=24.48 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 021703 97 AAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGG 157 (309)
Q Consensus 97 ~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG 157 (309)
+.+++.++.+=.++..|...+.=+.. |.+-..|.....++.+++.++.+|++++|=
T Consensus 4 ~i~~d~L~~~K~~~~~y~~a~~E~~n-----p~lR~~l~~~~~~~~~~~~~l~~~m~~kGw 59 (64)
T PF07875_consen 4 DIANDLLNSEKAAARNYATAALECAN-----PELRQILQQILNECQQMQYELFNYMNQKGW 59 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34667777777888888887776654 679999999999999999999999999984
No 62
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=67.76 E-value=22 Score=39.92 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=50.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 021703 177 GDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQ 237 (309)
Q Consensus 177 ~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~ 237 (309)
.++.++++.|+.+|+...+-|..+.+.+ +|+.+.++++ ++-+++.+|.+.+.++...
T Consensus 859 ~~~~eil~~Ai~mE~~g~~FY~~~A~~a---~~~~~K~lF~-~LA~eE~~H~~~l~~~~~~ 915 (1006)
T PRK12775 859 AAALEAIRTAFEIELGGMAFYARAAKET---SDPVLKELFL-KFAGMEQEHMATLARRYHA 915 (1006)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence 4689999999999999999998876654 8999999999 9999999999999877653
No 63
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=67.12 E-value=1.1e+02 Score=28.70 Aligned_cols=96 Identities=18% Similarity=0.175 Sum_probs=55.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021703 126 ALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVAN 205 (309)
Q Consensus 126 gLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~ef~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~ 205 (309)
...-++.||++.|.=|.+.|.+|.+.-..-.|. |. -|+...++... +.-++.+-++|..-.
T Consensus 20 ~~~el~~fl~ERa~IEe~Yak~L~klak~~~~~--------~e-------~Gtl~~sw~~~----~~e~E~~a~~H~~la 80 (233)
T cd07649 20 MQKEMAEFIRERIKIEEEYAKNLSKLSQSSLAA--------QE-------EGTLGEAWAQV----KKSLADEAEVHLKFS 80 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--------CC-------CChHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 456699999999999999999999886533322 21 13344443332 223344444443222
Q ss_pred hCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhc
Q 021703 206 KNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRV 241 (309)
Q Consensus 206 ~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~Lrrv 241 (309)
..=.-....=|. .|..+|.+..+++.+.+..+.+.
T Consensus 81 ~~L~~ev~~~l~-~f~~~~~k~~k~~e~~~~k~~K~ 115 (233)
T cd07649 81 SKLQSEVEKPLL-NFRENFKKDMKKLDHHIADLRKQ 115 (233)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111122244 56667888888888887776553
No 64
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=66.25 E-value=93 Score=28.53 Aligned_cols=32 Identities=34% Similarity=0.484 Sum_probs=27.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 021703 126 ALKGLAKFFKESSEEEREHAEKLMEYQNKRGG 157 (309)
Q Consensus 126 gLpGfAkfF~~qS~EEreHAekLieY~n~RGG 157 (309)
.+..++.||++.|.=|.++|.+|-+.-.+-.+
T Consensus 20 ~~~el~~f~keRa~iE~eYak~L~kLakk~~~ 51 (236)
T cd07651 20 TLEELRSFYKERASIEEEYAKRLEKLSRKSLG 51 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 46779999999999999999999987766543
No 65
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.26 E-value=1.3e+02 Score=28.91 Aligned_cols=122 Identities=18% Similarity=0.171 Sum_probs=80.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCcc
Q 021703 91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSE 170 (309)
Q Consensus 91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~e 170 (309)
-..--.+.|....+.|++|.+.=+-.++-|.. +.+.-+-.|+ +-|.||-.|-.-+-+++...|-.. .+.+..+
T Consensus 72 t~~g~aallHAiAHIEfNAInLaLDa~~RF~~--~p~~F~~dWm-~VA~EE~~HF~Ll~~~L~~LG~~Y--GDfpaHd-- 144 (268)
T COG2833 72 TTHGRAALLHAIAHIEFNAINLALDAVYRFAP--LPLQFYDDWM-RVADEEAKHFRLLRERLKSLGYDY--GDFPAHD-- 144 (268)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhcC--CcHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCc--CCCcccc--
Confidence 34455788888889999999999999998984 5665444444 468999999999999999999543 3333332
Q ss_pred CCcCccCcHHHHHHH---HHH---------HHH---HHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHH
Q 021703 171 FDHAEKGDALYAMEL---TLS---------LEK---LTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKK 230 (309)
Q Consensus 171 f~~~e~~d~lea~E~---AL~---------lEk---~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~ 230 (309)
...+|.+. .+. +|- .+|-.++ .+++ +.+|..++..|+ -++.+++.|+..
T Consensus 145 -------gLw~~a~~T~~dl~~RmalVprvLEARGLDatP~l~--aK~~-~~gD~~~~~iLd-IIlrDEigHVai 208 (268)
T COG2833 145 -------GLWQMAEATANDLLARMALVPRVLEARGLDATPSLR--AKLA-ETGDSEAAAILD-IILRDEIGHVAI 208 (268)
T ss_pred -------cHHHHHHHhhcCHHHHhhhhhhHHhhccCCCCHHHH--HHHH-HcCchHHHHHHH-HHHhccccceee
Confidence 12222211 111 111 1222222 2233 469999999999 899999988754
No 66
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=60.32 E-value=1.1e+02 Score=28.23 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=25.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021703 126 ALKGLAKFFKESSEEEREHAEKLMEYQNK 154 (309)
Q Consensus 126 gLpGfAkfF~~qS~EEreHAekLieY~n~ 154 (309)
....|+.||++.|.=|.++|.+|.+.-..
T Consensus 20 ~~~el~~f~keRa~iE~eYak~L~kLak~ 48 (239)
T cd07647 20 MCKELEDFLKQRAKAEEDYGKALLKLSKS 48 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45669999999999999999999988655
No 67
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=58.36 E-value=1.7e+02 Score=27.88 Aligned_cols=138 Identities=19% Similarity=0.208 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcCccc--------------------------------------chhHHH
Q 021703 92 TDDCEAAINEQINVEYNVSYVYHAM-FAYFDRDNVA--------------------------------------LKGLAK 132 (309)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YlsM-AayFd~d~vg--------------------------------------LpGfAk 132 (309)
..+....|-++.+.|.-|+-.=++| ..|..+.+-+ .+.+..
T Consensus 25 ~~nl~~lL~DHa~CE~KAA~tAm~li~rY~~~~~~~~~ll~~~~py~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~eLv~ 104 (240)
T PF06175_consen 25 PANLPTLLIDHANCEKKAAQTAMSLIRRYAVDKESGQALLAWLKPYEDFVYRKDGDIQKNQLSKSLQPKSHYPEKEELVD 104 (240)
T ss_dssp TH--HHHHHHHHHHHHHHHHHHHHHHHHTT---------------------------------------------HHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHH
Confidence 3566789999999999999888777 5554332211 122334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCcc---CCcCccCcHHHHHHHHHHHHHHHHHHH------HHHHHH
Q 021703 133 FFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSE---FDHAEKGDALYAMELTLSLEKLTNEKL------LNLHKV 203 (309)
Q Consensus 133 fF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~e---f~~~e~~d~lea~E~AL~lEk~vt~~L------~eL~~v 203 (309)
-+-..+.||+.|-++.++-+.+||- .+..+.+++-- ..+.-.+.+...+ .+.+...+ .....+
T Consensus 105 ~Ms~LarEEL~HFeqVl~im~~RGi--~l~~~~~d~Ya~~L~k~vR~~ep~~lv------DrLLv~AlIEARSCERF~lL 176 (240)
T PF06175_consen 105 KMSRLAREELHHFEQVLEIMKKRGI--PLGPDRKDRYAKGLRKHVRKGEPERLV------DRLLVGALIEARSCERFALL 176 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-----------SHHHHHHTTS-SSTTHHHH------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCCcCHHHHHHHHhccCCchHhHH------HHHHHHHhHhhhhHHHHHHH
Confidence 4556799999999999999999994 44454443310 0000011111111 12222222 223455
Q ss_pred HhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhcc
Q 021703 204 ANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVG 242 (309)
Q Consensus 204 A~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~LrrvG 242 (309)
|..- |..+..|-. .++..+..|-. +|+.--+...
T Consensus 177 a~~l-D~eL~~FY~-~Ll~SEArHy~---~yl~LA~~y~ 210 (240)
T PF06175_consen 177 AEHL-DEELAKFYR-SLLRSEARHYQ---DYLKLARQYF 210 (240)
T ss_dssp GGGS--HHHHHHHH-HHHHHHHHHHH---HHHHHHCCCS
T ss_pred HHhh-CHHHHHHHH-HHHHHHhhHHH---HHHHHHHHHC
Confidence 6555 999999999 78877777654 4444444443
No 68
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=55.94 E-value=1.7e+02 Score=27.86 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=26.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 021703 126 ALKGLAKFFKESSEEEREHAEKLMEYQNKRG 156 (309)
Q Consensus 126 gLpGfAkfF~~qS~EEreHAekLieY~n~RG 156 (309)
...-++.||+++|.=|.++|..|.+.-.+-+
T Consensus 27 ~~kel~~f~keRa~iEe~Yak~L~kLak~~~ 57 (269)
T cd07673 27 STKELSDFIRERATIEEAYSRSMTKLAKSAS 57 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3556899999999999999999998877554
No 69
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=53.73 E-value=1.2e+02 Score=28.11 Aligned_cols=96 Identities=19% Similarity=0.140 Sum_probs=52.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021703 126 ALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVAN 205 (309)
Q Consensus 126 gLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~ef~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~ 205 (309)
..+.++.||++.|.=|.+.|..|.+.-.+-...+ . ..+ |+...++...+. -++.+-++|....
T Consensus 20 ~ckel~~f~kERa~IE~~YAK~L~kLa~k~~k~~--~----------~~~-Gtl~~aw~~~~~----e~e~~a~~H~~la 82 (239)
T cd07658 20 FCKELATVLQERAELELNYAKGLSKLSGKLSKAS--K----------SVS-GTLSSAWTCVAE----EMESEADIHRNLG 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c----------cCC-CcHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3566999999999999999999998866421110 0 001 334444432222 2233334443332
Q ss_pred hCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHh
Q 021703 206 KNHDVQLADFVESKYLHEQVEAIKKISEYVAQLR 239 (309)
Q Consensus 206 ~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~Lr 239 (309)
+.=.-....-|. .|..+|.+.-+.+.+-+..+.
T Consensus 83 ~~L~~ev~~~l~-~~~~~~~k~rK~~~~~~~k~q 115 (239)
T cd07658 83 SALTEEAIKPLR-QVLDEQHKTRKPVENEVDKAA 115 (239)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 211122334555 677777777777775555443
No 70
>PRK10635 bacterioferritin; Provisional
Probab=52.79 E-value=88 Score=27.42 Aligned_cols=62 Identities=18% Similarity=0.177 Sum_probs=52.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021703 90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN 153 (309)
Q Consensus 90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n 153 (309)
...+.+.+.|..-+..|..+.-.|-.+..+|.. .+=..-..+|...-.+|-+|+..|-..+.
T Consensus 78 ~~g~~v~eml~~dl~~E~~ai~~y~e~i~~a~~--~~D~~s~~ll~~iL~dEe~H~~~le~~l~ 139 (158)
T PRK10635 78 NIGEDVEEMLRSDLRLELEGAKDLREAIAYADS--VHDYVSRDMMIEILADEEGHIDWLETELD 139 (158)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999996 35566778888888899999998866544
No 71
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=52.40 E-value=99 Score=26.93 Aligned_cols=57 Identities=21% Similarity=0.211 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHh
Q 021703 179 ALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLR 239 (309)
Q Consensus 179 ~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~Lr 239 (309)
..+-++.++..|+...+.+..+...| .|+.+.+-|+ ..+++-.++++.+..++..+.
T Consensus 6 ~~~~L~d~y~aE~q~~~~l~~~~~~a---~~~~L~~~l~-~h~~eT~~q~~rLe~~~~~lg 62 (159)
T PF05974_consen 6 FIDELRDLYSAEKQLLKALPKLAEAA---SSPELKAALE-EHLEETEQQIERLEQIFEALG 62 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----SSHHHHHHHH-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC---CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHcc
Confidence 35678889999999999999888766 5699999999 889999999999988777664
No 72
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=51.13 E-value=1.6e+02 Score=25.37 Aligned_cols=34 Identities=32% Similarity=0.370 Sum_probs=29.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCee
Q 021703 126 ALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV 159 (309)
Q Consensus 126 gLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V 159 (309)
-+..++.||++.|.=|.++|.+|-+.-.+-.+.+
T Consensus 15 ~~~e~~~f~keRa~iE~eYak~L~kLak~~~~~~ 48 (191)
T cd07610 15 LLKDLREFLKKRAAIEEEYAKNLQKLAKKFSKKP 48 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4667999999999999999999998877766544
No 73
>KOG4061 consensus DMQ mono-oxygenase/Ubiquinone biosynthesis protein COQ7/CLK-1/CAT5 [General function prediction only]
Probab=49.80 E-value=1.4e+02 Score=27.69 Aligned_cols=116 Identities=19% Similarity=0.265 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCc---cCCcCccC---
Q 021703 104 NVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS---EFDHAEKG--- 177 (309)
Q Consensus 104 n~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~---ef~~~e~~--- 177 (309)
.-||.|-++|----+...+-. ++.-.++.=++|.+|-..|-+++.++--+|.+- .|.- .|. ..-|
T Consensus 58 AGElGAdrIYaGQ~avL~~~~-----vgpvi~hmWdqEk~Hl~tf~~l~~k~rVrpT~l---~P~w~vagfa-lGaGTAL 128 (217)
T KOG4061|consen 58 AGELGADRIYAGQMAVLQGTS-----VGPVIKHMWDQEKEHLKTFENLALKHRVRPTVL---TPLWNVAGFA-LGAGTAL 128 (217)
T ss_pred ccccccchhhhchhhhhcCCC-----chhHHHHHHHHHHHHHHHHHHHHHHccCCchhh---hhHHHHHHHH-hccchhh
Confidence 458999999986666555532 777888888999999999999999999887642 2220 010 0001
Q ss_pred -cHHHHHHHHHHHHHHHHHHHHH-HHHHHhh--CCChHHHHHhHHHhHHHHHHHHH
Q 021703 178 -DALYAMELTLSLEKLTNEKLLN-LHKVANK--NHDVQLADFVESKYLHEQVEAIK 229 (309)
Q Consensus 178 -d~lea~E~AL~lEk~vt~~L~e-L~~vA~~--~~D~~t~dFLE~~FL~EQvE~Ik 229 (309)
....||.+..+.|.-+-..|++ |-+++.. +.+-.+...|. .|=+|+.||.+
T Consensus 129 lg~eaAMACT~AVEtvIg~HYNdQlr~l~~~~pe~~kell~~i~-~fRDeEleHhd 183 (217)
T KOG4061|consen 129 LGKEAAMACTEAVETVIGGHYNDQLRELAEDDPEEHKELLSTIT-KFRDEELEHHD 183 (217)
T ss_pred hChHHHHHHHHHHHHHHHHhhhHHHHHHHHhCcHhHHHHHHHHH-HHhHHHHHhhc
Confidence 3457888888888877777765 3334432 23334444444 45555544443
No 74
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=47.86 E-value=2.2e+02 Score=26.00 Aligned_cols=34 Identities=35% Similarity=0.302 Sum_probs=28.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCee
Q 021703 126 ALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV 159 (309)
Q Consensus 126 gLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V 159 (309)
-+..+..||++.|.=|.++|.+|-+....-.++.
T Consensus 20 ~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~ 53 (251)
T cd07653 20 FLERYGKFVKERAAIEQEYAKKLRKLVKKYLPKK 53 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4677999999999999999999998876644433
No 75
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=47.78 E-value=1.4e+02 Score=26.15 Aligned_cols=61 Identities=13% Similarity=0.149 Sum_probs=51.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 021703 90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKR 155 (309)
Q Consensus 90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~R 155 (309)
.++.++.+.|...|..|-.|.-.|-.++..-++ |+.-+-+.....+|..|.+.|-+.+.+.
T Consensus 95 ~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~~D-----p~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 95 QSSGNLVADLRSNIAAESRARLTYERLYEMTDD-----PGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356688899999999999999999999998764 5566666778899999999999887654
No 76
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=47.13 E-value=1.4e+02 Score=26.07 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 021703 179 ALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (309)
Q Consensus 179 ~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~L 238 (309)
.++-++.+...|+...+.+..+.+.| +++.+.+-|+ .=+.|-.++++.|..++..+
T Consensus 4 f~~~L~d~y~aE~Q~~~al~~m~~~a---~~peLk~~l~-~H~~eT~~qi~rLe~if~~l 59 (147)
T cd07909 4 FVHELRDLYSAEKQLVKALPKMAKAA---TSEELKEAFE-SHLEETEGQVERLEQIFESL 59 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 35678899999999999999887544 8999999999 66888888888888777665
No 77
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=46.98 E-value=1.4e+02 Score=25.64 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 021703 178 DALYAMELTLSLEKLTNEKLLNLHKVANKN--HDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (309)
Q Consensus 178 d~lea~E~AL~lEk~vt~~L~eL~~vA~~~--~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~L 238 (309)
.+.+++...+..|-.....|..+...|... +-+.++.|+. .--.|+.+|..++-+++...
T Consensus 3 ~i~~~Ln~~i~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~-~~a~eE~~HA~~l~~~i~~r 64 (161)
T cd01056 3 ECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFR-KLSDEEREHAEKLIKYQNKR 64 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999877 8899999988 66777777777777777664
No 78
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=46.80 E-value=1.1e+02 Score=22.35 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 021703 180 LYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQ 237 (309)
Q Consensus 180 lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~ 237 (309)
.+.+...|..+|.....+....-.| .++.+++.|. ..+.+..+.-.++-++..+
T Consensus 3 ~~i~~d~L~~~K~~~~~y~~a~~E~---~np~lR~~l~-~~~~~~~~~~~~l~~~m~~ 56 (64)
T PF07875_consen 3 KDIANDLLNSEKAAARNYATAALEC---ANPELRQILQ-QILNECQQMQYELFNYMNQ 56 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3567788999999888877665544 8999999999 7888888888887776654
No 79
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=46.25 E-value=2.6e+02 Score=26.26 Aligned_cols=92 Identities=17% Similarity=0.255 Sum_probs=55.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 021703 127 LKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVAN- 205 (309)
Q Consensus 127 LpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~~ef~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~- 205 (309)
..-+..||++.+.=|.++|.+|.+...+-+|... -|+...++...+ .| ++.+-++|....
T Consensus 21 c~el~~f~keRa~iE~~Yak~L~kl~kk~~~~~e---------------~gTl~~a~~~~~-~e---~e~~a~~H~~ia~ 81 (242)
T cd07671 21 CKDVEELLKQRAQAEERYGKELVQIARKAGGQTE---------------INTLKASFDQLK-QQ---IENIGNSHIQLAG 81 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc---------------chHHHHHHHHHH-HH---HHHHHHHHHHHHH
Confidence 4458899999999999999999998877665332 134455543332 22 233333443221
Q ss_pred hCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhh
Q 021703 206 KNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRR 240 (309)
Q Consensus 206 ~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~Lrr 240 (309)
.-.+- ... ++ .|..+|.++-+.+.+.+..+.+
T Consensus 82 ~L~~~-~~~-l~-~f~~~qke~rK~~e~~~eK~qk 113 (242)
T cd07671 82 MLREE-LKS-LE-EFRERQKEQRKKYEAVMERVQK 113 (242)
T ss_pred HHHHH-HHH-HH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 11121 222 55 6777888888877777665543
No 80
>PRK10304 ferritin; Provisional
Probab=45.36 E-value=1.5e+02 Score=26.10 Aligned_cols=61 Identities=10% Similarity=0.196 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHh
Q 021703 178 DALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLR 239 (309)
Q Consensus 178 d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~Lr 239 (309)
.+.+++...+..|-.....|..+...|+..+=+.++.|+. .=-.|+.+|..++-+++....
T Consensus 5 ~i~~~Ln~qin~El~As~~Yl~ma~~~~~~gl~g~A~~f~-~qs~EE~~HA~kl~~~i~~rg 65 (165)
T PRK10304 5 EMIEKLNEQMNLELYSSLLYQQMSAWCSYHTFEGAAAFLR-RHAQEEMTHMQRLFDYLTDTG 65 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHH-HHHHHHHHHHHHHHHHHHHcC
Confidence 4788999999999999999999999999999999999988 556777888888887777653
No 81
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=44.20 E-value=95 Score=26.25 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHh
Q 021703 180 LYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLR 239 (309)
Q Consensus 180 lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~Lr 239 (309)
.+++..|++.|+...+-|..+++.+. ....+. .+.+++.+|++.+..++.+..
T Consensus 2 ~~~L~~Ale~Ek~a~~~Y~~~~~k~~------~~~~F~-~la~~E~~H~~~l~~L~~~~~ 54 (135)
T cd01048 2 IAALLYALEEEKLARDVYLALYEKFG------GLRPFS-NIAESEQRHMDALKTLLERYG 54 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc------CcchHH-HHHHHHHHHHHHHHHHHHHcC
Confidence 35889999999999999999998873 233444 578899999999988877654
No 82
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=43.39 E-value=1.4e+02 Score=24.57 Aligned_cols=52 Identities=10% Similarity=0.042 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 021703 183 MELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (309)
Q Consensus 183 ~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~L 238 (309)
+..++..|+....-|..+...+ +|+.....+. ..-+++.+|.+.+..++..+
T Consensus 3 ~~~~~~~E~~~~~~Y~~la~~~---~~~~~k~~f~-~lA~~E~~H~~~~~~~~~~~ 54 (125)
T cd01044 3 LRKFQKDEITEAAIYRKLAKRE---KDPENREILL-KLAEDERRHAEFWKKFLGKR 54 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Confidence 4567888999999888887755 7888999999 89999999999998877654
No 83
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=41.82 E-value=1.5e+02 Score=25.31 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=33.2
Q ss_pred HHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhccC
Q 021703 203 VANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQ 243 (309)
Q Consensus 203 vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~LrrvG~ 243 (309)
.|++.+|+.+..+++ .|..+-..++.+|..+|..+..-..
T Consensus 22 aae~v~~~~lk~~f~-~~~~~~~~~~~eL~~~v~~lGg~p~ 61 (139)
T TIGR02284 22 SAEEVKDPELATLFR-RIAGEKSAIVSELQQVVASLGGKPE 61 (139)
T ss_pred HHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 344568999999999 9999999999999999888864433
No 84
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=40.39 E-value=1.4e+02 Score=26.79 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=51.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHh
Q 021703 178 DALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLR 239 (309)
Q Consensus 178 d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~Lr 239 (309)
...+-|+.++.-|-.....|.-..++|++++++..+..+. ..-.++..|-+.+...+.++.
T Consensus 4 ~t~~~L~~aF~GEs~a~~rY~~~A~~A~~eG~~~va~lfr-~iA~~E~~HA~~~~~~l~~~~ 64 (166)
T COG1592 4 ETEENLRKAFAGESMAVMRYLIFAKVAEEEGYPEIARLFR-AIAEAEAVHAKNHLKLLGKLL 64 (166)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHhcccc
Confidence 3567788999999999999999999999999999999998 778888888777766666544
No 85
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=39.97 E-value=3.2e+02 Score=25.58 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=54.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeeccccCCCccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021703 126 ALKGLAKFFKESSEEEREHAEKLMEYQNK-RGGKVKLQSILMPLSEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVA 204 (309)
Q Consensus 126 gLpGfAkfF~~qS~EEreHAekLieY~n~-RGG~V~L~~I~~P~~ef~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA 204 (309)
...-+..|+++.|.=|.+.|.+|.+.-.+ .+|.+. -|+...++.. +..|-.-...+|......
T Consensus 20 ~~~el~~f~kERA~IE~~YaK~L~kLskk~~~g~~E---------------~GTl~~sw~~-~~~E~e~~a~~H~~la~~ 83 (240)
T cd07672 20 NCKEFEDFLKERASIEEKYGKELLNLSKKKPCGQTE---------------INTLKRSLDV-FKQQIDNVGQSHIQLAQT 83 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc---------------cchHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45669999999999999999999988765 332211 1344444432 223333333333322222
Q ss_pred hhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHh
Q 021703 205 NKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLR 239 (309)
Q Consensus 205 ~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~Lr 239 (309)
.. + .+. -++ .|...|-+.-+.+...+..+.
T Consensus 84 L~--~-~~~-~~~-~f~~~qk~~rKk~e~~~ek~~ 113 (240)
T cd07672 84 LR--D-EAK-KME-DFRERQKLARKKIELIMDAIH 113 (240)
T ss_pred HH--H-HHH-HHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 22 2 111 355 677777777777777666663
No 86
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=39.18 E-value=2.4e+02 Score=23.97 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021703 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN 153 (309)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n 153 (309)
...+.+.+-..+..|-.++-.|..+...+.. .+=++...+|..-..+|-+|+..|-.++.
T Consensus 80 ~~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~--~~D~~t~~ll~~~i~eee~h~~~l~~~l~ 139 (157)
T TIGR00754 80 GETVREMLEADLALELDVLNRLKEAIAYAEE--VRDYVSRDLLEEILEDEEEHIDWLETQLE 139 (157)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999999999999988875 46788999999999999999998877765
No 87
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=38.09 E-value=3.3e+02 Score=25.23 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=27.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 021703 126 ALKGLAKFFKESSEEEREHAEKLMEYQNKRGG 157 (309)
Q Consensus 126 gLpGfAkfF~~qS~EEreHAekLieY~n~RGG 157 (309)
...-+++||++.|.=|.++|..|.+...+-.+
T Consensus 20 ~~~el~~f~keRa~IEe~Yak~L~kLakk~~~ 51 (261)
T cd07648 20 AVKELADFLRERATIEETYSKALNKLAKQASN 51 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35669999999999999999999997776544
No 88
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=36.93 E-value=3.6e+02 Score=25.27 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=23.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021703 127 LKGLAKFFKESSEEEREHAEKLMEYQN 153 (309)
Q Consensus 127 LpGfAkfF~~qS~EEreHAekLieY~n 153 (309)
-.-|+.||+++|.=|.++|..|.+.-.
T Consensus 21 ~kel~~flkeRa~IEe~Yak~L~klak 47 (261)
T cd07674 21 TKELADFVRERAAIEETYSKSMSKLSK 47 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455999999999999999999988774
No 89
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=36.87 E-value=1.6e+02 Score=25.90 Aligned_cols=62 Identities=6% Similarity=0.065 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhccC
Q 021703 178 DALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQ 243 (309)
Q Consensus 178 d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~LrrvG~ 243 (309)
.+.+++...|+-+....-+++..|-.+...+=+.+..+++ +...+..++++.+++ +|+..|.
T Consensus 22 ~~~~~Ln~~LA~~~~l~~k~~~~hW~v~G~~f~~lH~~le-e~~~~~~~~~D~iAE---Ri~~lGg 83 (162)
T PRK09448 22 ATIELLNQQLAQFIDLSLITKQAHWNMKGANFIAVHEMLD-GFRTALEDHLDTMAE---RAVQLGG 83 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHH-HHHHHHHHHhHHHHH---HHHHcCC
Confidence 4788999999999999999999999987766677787888 666676677777764 4455553
No 90
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=35.37 E-value=1.2e+02 Score=30.18 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHH-H---HhHHHhHHHHHHHHHHHHHHHHHHhhccC
Q 021703 180 LYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLA-D---FVESKYLHEQVEAIKKISEYVAQLRRVGQ 243 (309)
Q Consensus 180 lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~-d---FLE~~FL~EQvE~Ik~L~d~l~~LrrvG~ 243 (309)
.+.++.+++......+.++++++++.....+-+. + .+...|.-+-.+.++.+.+.+..++..+.
T Consensus 161 ~e~L~~aI~~~N~~R~~~~~l~~l~~~~p~pitg~e~~~~~~~~~~~~~~e~~~~L~~~l~el~~~~~ 228 (380)
T TIGR02263 161 DDAIRASIAVFNDNRKLIQALYGLRADEPWKVPSADLYLLLRAGLVIPVEEHNQMLADYLAAARKQEA 228 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999998665443331 1 12223334467888889888888876553
No 91
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit B (AAMH_B). Subunit B (beta) of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds; the beta-subunit lacks the C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphthol. Both enzyme systems consis
Probab=34.69 E-value=4.3e+02 Score=25.57 Aligned_cols=141 Identities=11% Similarity=0.060 Sum_probs=83.7
Q ss_pred ccCHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCee-eeccc
Q 021703 90 KFTDDCEAAINEQI----NVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV-KLQSI 164 (309)
Q Consensus 90 ~~s~e~e~aLNeQI----n~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V-~L~~I 164 (309)
+++++-.+.|..++ ..|+.+......++.++-. .++..-+.-++-.|..||+.+..|-...++.. .+. .
T Consensus 92 ~ld~~w~~~l~~~l~p~~~~E~ga~~~~a~~~r~~~~-----~~i~n~~~~qa~D~lR~aQ~~~~~~~~l~~~~~~~~-~ 165 (304)
T cd01058 92 ALSPEWREFLARYLGPLRHVEHGLQMANAYVAQYAPS-----TTITNAAAFQAMDKLRIAQDIAYRGLELDGNTPGFD-G 165 (304)
T ss_pred hCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcch-----HHHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCCCC-c
Confidence 35555555555544 3455443333333333332 34556667789999999999998876776652 221 1
Q ss_pred cCCCcc-CCcCccCcHHHHHHHHH--------------HHHHHHHHHH-HHHHHHHhhCCChHHHHHhHHHhHHHHHHHH
Q 021703 165 LMPLSE-FDHAEKGDALYAMELTL--------------SLEKLTNEKL-LNLHKVANKNHDVQLADFVESKYLHEQVEAI 228 (309)
Q Consensus 165 ~~P~~e-f~~~e~~d~lea~E~AL--------------~lEk~vt~~L-~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~I 228 (309)
...... .+++.|..+.+.+|..+ ..|-.++..+ ..+.+.|..++|..+..++. ....+..++.
T Consensus 166 ~~~k~~W~~dp~Wq~~R~~~E~~~~~~Dw~E~~va~nlv~e~l~~~l~~~~~~~~Aa~nGD~~t~~l~~-s~q~d~~Rh~ 244 (304)
T cd01058 166 DAAKEAWEEDPAWQGLRELVEKLLVTYDWGEAFVAQNLVFDPLVGELVRRELDRLAASNGDTLTPLLTE-FMLDDAQRHR 244 (304)
T ss_pred hHHHHHHhcCchhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHH-HHHHHHHHHH
Confidence 111110 12344544555555444 3344444333 34778888999999998888 7778888888
Q ss_pred HHHHHHHHH
Q 021703 229 KKISEYVAQ 237 (309)
Q Consensus 229 k~L~d~l~~ 237 (309)
++....+.-
T Consensus 245 ~~~~alvk~ 253 (304)
T cd01058 245 RWTDALVKT 253 (304)
T ss_pred HHHHHHHHH
Confidence 888776654
No 92
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=34.40 E-value=4e+02 Score=25.10 Aligned_cols=107 Identities=10% Similarity=0.167 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCC---------ccCCcCccCcHHHHHHHHHHHHHHHHHHHH
Q 021703 128 KGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPL---------SEFDHAEKGDALYAMELTLSLEKLTNEKLL 198 (309)
Q Consensus 128 pGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~---------~ef~~~e~~d~lea~E~AL~lEk~vt~~L~ 198 (309)
.....|......||..|+..+.+++++-|-.-.+...+.+. ... ...+...+-.+-.++-.|..+...+.
T Consensus 112 ~~~~~~~~~~i~DE~rH~~mf~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~lv~Ee~i~~~~~ 190 (304)
T PF11583_consen 112 DDAKRYALTEIADEARHSLMFARAINRTGRRRGLAPLPPPYPPRRLLRRLARL-LPPWERGLLFFAFALVAEEIIDAYQR 190 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S--HHHHHHHHHHHTS--SHHHHHHHHHHHHHHHHHSBHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCCCchHHHHHHHHHh-cccccchHHHHHHHHHHHHHHHHHHH
Confidence 44667888999999999999999999988111111111000 000 01111234455666777766665555
Q ss_pred HHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 021703 199 NLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (309)
Q Consensus 199 eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~L 238 (309)
.+.. +..-+|....... --+.|+..|+....+.+...
T Consensus 191 ~~~~--D~~iqP~~r~v~~-iH~~DEaRHi~f~~~~l~~~ 227 (304)
T PF11583_consen 191 EIAR--DETIQPLVRQVMR-IHVRDEARHIAFAREELRRV 227 (304)
T ss_dssp HHHT---SSS-HHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhc--CCCCChHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4422 2224677777777 56789999999998888665
No 93
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=32.73 E-value=4.2e+02 Score=24.81 Aligned_cols=34 Identities=29% Similarity=0.359 Sum_probs=28.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCee
Q 021703 126 ALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV 159 (309)
Q Consensus 126 gLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V 159 (309)
-+..+..||++.|.=|.++|.+|-+...+-.+.+
T Consensus 20 ~~~el~~f~kERa~IE~~Yak~L~kLakk~~~~~ 53 (258)
T cd07655 20 LCDDLMKMVQERAEIEKAYAKKLKEWAKKWRDLI 53 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4567999999999999999999998887655444
No 94
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=32.55 E-value=76 Score=26.31 Aligned_cols=56 Identities=27% Similarity=0.231 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 021703 182 AMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (309)
Q Consensus 182 a~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~L 238 (309)
.+..+|+.+....-++++.|-.....+-..+..+++ +...+..++++.+.+-+-.|
T Consensus 2 ~Ln~~lA~~~~~~~~~~~~HW~v~G~~f~~lh~~l~-e~~~~~~~~~D~lAERi~~l 57 (139)
T cd01043 2 ALNQLLADLYVLYLKLKNYHWNVKGPNFFALHELFE-ELYDELREAIDEIAERIRAL 57 (139)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCccCcCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 466788888889999999999888888888898999 77888888888877554444
No 95
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1.14.13.7 from EC) is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives. This family contains both the P1 and P3 polypeptides of phenol hydroxlase and the alpha and beta chain of methane hydroxylase protein A. Methane hydroxylase protein A (1.14.13.25 from EC) is responsible for the initial oxygenation of methane to methanol in methanotrophs. It also catalyses the monohydroxylation of a variety of unactivated alkenes, alicyclic, aromatic and heterocyclic compounds. Also included in this family is toluene-4-monooxygenase system protein A (1.14.13 from EC), which hydroxylates toluene to form P-cresol.; GO: 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 3N20_B 3RNA_B 3N1X_B 3RNC_B 3RNG_B 3RNF_B 3N1Z_B 3RN9_B 3N1Y_B 3RNB_B ....
Probab=32.30 E-value=4.1e+02 Score=24.53 Aligned_cols=138 Identities=14% Similarity=0.155 Sum_probs=81.1
Q ss_pred CHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCee-eecccc-
Q 021703 92 TDDCEAAINE----QINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV-KLQSIL- 165 (309)
Q Consensus 92 s~e~e~aLNe----QIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V-~L~~I~- 165 (309)
+++-.+.|.. .-..|+.+...-..++.+.-.. .+.+.+-| ++-+|+.|++++.-++....+.. ....-.
T Consensus 68 ~~~w~~~l~~~~~~~~~~E~ga~~~~a~~~r~~~~~--~i~n~~~f---~a~DelR~~q~~~~~~~~~~~~~~~~~~~~k 142 (233)
T PF02332_consen 68 DPRWVEFLKRHLGPLRHAEYGAQMASAYIARFAPGT--AIRNAATF---QAMDELRHAQRQALLLKELAGAYPDFAGAAK 142 (233)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSH--HHHHHHHH---HHHHHHHHHHHHHHHHHHHHCHCCCSCCCTH
T ss_pred CHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhcCcH--HHHHHHHH---HHhHHHHHHHHHHHHHhhhhhhCcccChHHH
Confidence 4444444444 4467888777777777766653 34444333 88899999999997777653321 111000
Q ss_pred -----CC----C-----ccCCcCccCcHHHHHHHHHHHHHHHHHHH-HHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHH
Q 021703 166 -----MP----L-----SEFDHAEKGDALYAMELTLSLEKLTNEKL-LNLHKVANKNHDVQLADFVESKYLHEQVEAIKK 230 (309)
Q Consensus 166 -----~P----~-----~ef~~~e~~d~lea~E~AL~lEk~vt~~L-~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~ 230 (309)
.| . ..+-..+| ..-.+...|..|-.++..+ .++.+.|..++|..+..++. .+-.+..++.++
T Consensus 143 ~~w~~~p~wq~~R~~vE~~~~~~Dw--~E~~va~nlv~e~l~~~l~~~~~~~~A~~nGD~~~~~l~~-~~q~d~~r~~~~ 219 (233)
T PF02332_consen 143 EAWLNDPAWQPLRRLVEDLLVTYDW--FEAFVALNLVFEPLFTNLLFVEFDRLAAANGDFLTPTLTS-SIQSDEARHMRW 219 (233)
T ss_dssp HHHHHSHHHHHHHHHHHHHTTSSSH--HHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHhhCchhHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH-HHHHHHHHHHHH
Confidence 00 0 00111122 1223344455666665544 45778899999999998888 677778888887
Q ss_pred HHHHHHH
Q 021703 231 ISEYVAQ 237 (309)
Q Consensus 231 L~d~l~~ 237 (309)
-...+..
T Consensus 220 ~~al~~~ 226 (233)
T PF02332_consen 220 GDALFKM 226 (233)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766544
No 96
>COG4445 MiaE Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=32.15 E-value=4e+02 Score=24.44 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCC
Q 021703 97 AAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPL 168 (309)
Q Consensus 97 ~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~ 168 (309)
-.|-++...|+.|..+-+.+-.-+.. -..+-.-+-..+.||.+|-+...+.+..||-. +-+|+++.
T Consensus 31 vlLlDH~~CE~KAa~tAl~li~kY~~----~~~lv~km~~larEEL~HFeqV~eilq~RnI~--~~~i~asr 96 (203)
T COG4445 31 VLLLDHLHCELKAAQTALNLIRKYPS----NTDLVDKMVLLAREELHHFEQVLEILQARNIP--YVPIPASR 96 (203)
T ss_pred eehhhhHHHHHHHHHHHHHHHHHccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--cccCCccH
Confidence 35667889999988876655444433 24466778888999999999999999999944 44555554
No 97
>PRK13456 DNA protection protein DPS; Provisional
Probab=31.86 E-value=2.9e+02 Score=25.40 Aligned_cols=61 Identities=11% Similarity=-0.031 Sum_probs=45.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 021703 177 GDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (309)
Q Consensus 177 ~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~L 238 (309)
..+++.+..|++.|-...-.|...+..|.--.=.....|++ .=..|..+|-+.+.+-|.+|
T Consensus 19 ~~li~lLn~AlA~E~~a~~~Y~~~a~~~~G~~~e~V~e~le-~a~~EEl~HA~~lAeRI~qL 79 (186)
T PRK13456 19 DKLVELLVKNAAAEFTTYYYYTILRAHLIGLEGEGLKEIAE-DARLEDRNHFEALVPRIYEL 79 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999988888888887655555568888 45555557777776555544
No 98
>COG3685 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.63 E-value=3.4e+02 Score=24.59 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 021703 179 ALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (309)
Q Consensus 179 ~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~L 238 (309)
..+-++.+...|+.+.+.|-.+.+-| .++.+..-+| .-++|-..+|+.|...+..+
T Consensus 10 f~~~LrD~y~aEkq~~kaL~kma~~~---~~~~Lka~~E-~Hl~ET~~qi~rLe~Vfe~~ 65 (167)
T COG3685 10 FIDTLRDIYAAEKQILKALPKMARRA---QYPELKAAIE-KHLEETKGQIERLEQVFERL 65 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 46678889999999999988877766 4999999999 67888888888888777763
No 99
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=31.07 E-value=2.3e+02 Score=21.33 Aligned_cols=28 Identities=39% Similarity=0.553 Sum_probs=24.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021703 127 LKGLAKFFKESSEEEREHAEKLMEYQNK 154 (309)
Q Consensus 127 LpGfAkfF~~qS~EEreHAekLieY~n~ 154 (309)
+.-+.+||+++|.=|.++|.+|-+-..+
T Consensus 25 ~~~~~~f~~~Ra~iE~eYak~L~kL~~~ 52 (87)
T smart00055 25 LEDLKKFIRERAKIEEEYAKKLQKLSKK 52 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4559999999999999999999988765
No 100
>KOG4090 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.63 E-value=38 Score=30.23 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=28.9
Q ss_pred CChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhccCCCC
Q 021703 208 HDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQGHG 246 (309)
Q Consensus 208 ~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~LrrvG~g~G 246 (309)
=|++...|++ .+++|..+|+.++.|.+.||...+.+|
T Consensus 118 C~~e~kqF~d--Ca~~~~~d~slC~~f~e~Lk~Ck~~~~ 154 (157)
T KOG4090|consen 118 CFIEIKQFLD--CAQNQGSDISLCEGYNEMLKQCKKNSG 154 (157)
T ss_pred hHHHHHHHHH--HHHhcCcchHHHHHHHHHHHHHHHHhc
Confidence 3677788888 788888888888888888887765444
No 101
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=28.76 E-value=3.3e+02 Score=24.46 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHh
Q 021703 180 LYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQLR 239 (309)
Q Consensus 180 lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~Lr 239 (309)
-.+|+-.-+-|--...-|+.-..++.. |+.+..+|+ ++.+++.+|..++++.+.+++
T Consensus 4 ~r~lRVdHAGE~~A~~iY~gQ~~~~~~--~~~~~~~l~-~~~~~E~~Hl~~f~~~l~~~~ 60 (172)
T PF03232_consen 4 ARILRVDHAGEVGAVRIYRGQLAVARR--DPELRPFLK-EMAEEEKDHLAWFEQLLPELR 60 (172)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHCC--CHHHHHHHH-HHHHHHHHHHHHHHHHhHHcC
Confidence 346666677777666666655555532 999999999 999999999999999888763
No 102
>PF11860 DUF3380: Protein of unknown function (DUF3380); InterPro: IPR024408 Proteins in this entry including lysozyme from Enterobacteria phage PRD1 [, ].
Probab=28.74 E-value=1.1e+02 Score=27.74 Aligned_cols=59 Identities=12% Similarity=0.227 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 021703 96 EAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRG 156 (309)
Q Consensus 96 e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RG 156 (309)
-..||+.-..+=.+.=.+..|+.++.. .|++-...|+.....-|.+|-+-|+.||...+
T Consensus 77 A~~ld~~AAl~SaSWG~fQIMGfn~~~--~Gy~sv~~fv~am~~se~~Ql~af~~Fi~~~~ 135 (175)
T PF11860_consen 77 ARALDEEAALESASWGLFQIMGFNWKA--LGYASVEEFVEAMCESEAAQLDAFVRFIKANP 135 (175)
T ss_pred HHhhCHHHHHHHhhhhHHHHHHHHHHH--cCCCCHHHHHHHHHhCHHHHHHHHHHHHHcCH
Confidence 456778888888888899999999988 79999999999999999999999999998854
No 103
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=26.41 E-value=4.2e+02 Score=22.79 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=44.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 021703 178 DALYAMELTLSLEKLTNEKLLNLHKVANKN--HDVQLADFVESKYLHEQVEAIKKISEYVAQL 238 (309)
Q Consensus 178 d~lea~E~AL~lEk~vt~~L~eL~~vA~~~--~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~L 238 (309)
.+..++...+.+|-.....|..+...|.+. +=+.++.|+. .--.|..+|..++-+|+...
T Consensus 3 ~~~~~Ln~qi~~El~as~~Yl~ma~~~~~~~~~l~g~a~~f~-~~s~eE~~HA~~l~~yi~~r 64 (160)
T cd00904 3 KVEAAVNRQLNLELYASYTYLSMATYFDRDDVALKGVAHFFK-EQAQEEREHAEKFYKYQNER 64 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHC
Confidence 367899999999999999999999999654 5666666666 34445555666666665554
No 104
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=26.34 E-value=1.3e+02 Score=22.55 Aligned_cols=31 Identities=39% Similarity=0.448 Sum_probs=26.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 021703 126 ALKGLAKFFKESSEEEREHAEKLMEYQNKRG 156 (309)
Q Consensus 126 gLpGfAkfF~~qS~EEreHAekLieY~n~RG 156 (309)
-+..++.||++.+.-|.++|..|-+.-.+-.
T Consensus 24 ~~~~l~~~~keRa~lE~~Yak~L~kl~~~~~ 54 (91)
T PF00611_consen 24 LLEELASFFKERASLEEEYAKSLQKLAKKFK 54 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667999999999999999999987766543
No 105
>COG4902 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.36 E-value=5.3e+02 Score=23.27 Aligned_cols=97 Identities=19% Similarity=0.219 Sum_probs=59.2
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCC
Q 021703 89 HKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPL 168 (309)
Q Consensus 89 q~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~L~~I~~P~ 168 (309)
+.++++-...|-.-+..|=-|-.+|+.+.- .|+++ .|+..|+-|.+|....--.+.+-+ ++.|.
T Consensus 44 ~plsdeE~nsLiyMrEEEKLARDVYL~LYn-----kw~l~----IF~nIA~SEQ~HmDAVk~LlekYn-------v~dP~ 107 (189)
T COG4902 44 SPLSDEEINSLIYMREEEKLARDVYLYLYN-----KWNLP----IFRNIAASEQEHMDAVKSLLEKYN-------VQDPA 107 (189)
T ss_pred CCCChHHHhhHHHHHHHHHHHhhHHhhhhh-----ccCcH----HHHHHHHhHHHHHHHHHHHHHHcC-------CCCCC
Confidence 445665555666666777778888886643 37887 578899999999887654444433 33454
Q ss_pred ccCCcCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhH
Q 021703 169 SEFDHAEKGDALYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVE 217 (309)
Q Consensus 169 ~ef~~~e~~d~lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE 217 (309)
+. +....| .+..+++|+..--+.+|..-.|-|.
T Consensus 108 ~~-------~siGvF---------~NpelqeLYn~Lve~Gs~S~vDALK 140 (189)
T COG4902 108 ST-------TSIGVF---------TNPELQELYNQLVEQGSVSRVDALK 140 (189)
T ss_pred cc-------Ccceee---------cCHHHHHHHHHHHHccchhhHhHHH
Confidence 31 112222 2344555665555566666666655
No 106
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=24.31 E-value=3.2e+02 Score=27.81 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHH-----HHhHHHhH-HHHHHHHHHHHHHHHHHh-hccCC
Q 021703 180 LYAMELTLSLEKLTNEKLLNLHKVANKNHDVQLA-----DFVESKYL-HEQVEAIKKISEYVAQLR-RVGQG 244 (309)
Q Consensus 180 lea~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~-----dFLE~~FL-~EQvE~Ik~L~d~l~~Lr-rvG~g 244 (309)
.+.|+.+++.+......++++++++...-.|-+. .+.- .++ ....+.++.+..++..|+ ++.+|
T Consensus 181 ~e~L~eaI~n~nr~~~~~~e~~~l~~~~P~Pisg~dl~~~~~~-~~~~~~~~~~~~~~~~L~~el~~r~~~G 251 (430)
T TIGR03191 181 DELFIKAIKNEMRSTARWADICALNKAKPAPLDEKTMYSLYVL-AILHKSSQWCADFMDELYEEVKDRVARG 251 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-HHhcCccHHHHHHHHHHHHHHHHHHHcC
Confidence 3566667777776666677788777543332221 1222 233 222334666666666665 34433
No 107
>PRK13689 hypothetical protein; Provisional
Probab=23.45 E-value=79 Score=25.02 Aligned_cols=53 Identities=36% Similarity=0.532 Sum_probs=36.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhccCCCCCChhhHHHHhhhhcccccchhHHHHHhhhhccCCCccchhc
Q 021703 218 SKYLHEQVEAIKKISEYVAQLRRVGQGHGRNQNKISFLINVTNLTFSPLLNMIINYLNCLLSSPSKRVVL 287 (309)
Q Consensus 218 ~~FL~EQvE~Ik~L~d~l~~LrrvG~g~G~~q~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (309)
+.|=++|+|.+ +.+++.-|.+-..+ .| |..--|-||+-|.||--. .|..|.++
T Consensus 5 SKYsd~qvE~i--l~el~~VLeKH~Ap--~D------------LSLMvLGN~vTnlln~~V-~~~qR~~i 57 (75)
T PRK13689 5 SKYSDEQVEQL--LAELLAVLEKHKAP--TD------------LSLMVLGNMVTNLLNTSV-APAQRQAI 57 (75)
T ss_pred ccccHHHHHHH--HHHHHHHHHhcCCC--cc------------HHHHHHHHHHHHHHhhcC-CHHHHHHH
Confidence 56788999876 66777777665432 12 334557799999999887 47777665
No 108
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=22.40 E-value=6.4e+02 Score=23.50 Aligned_cols=142 Identities=16% Similarity=0.178 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCeeee---------------ccccCCCccCCcCccCcHHHHHHHHHH---HHHH-
Q 021703 132 KFFKESSEEEREHAEKLMEYQNKRGGKVKL---------------QSILMPLSEFDHAEKGDALYAMELTLS---LEKL- 192 (309)
Q Consensus 132 kfF~~qS~EEreHAekLieY~n~RGG~V~L---------------~~I~~P~~ef~~~e~~d~lea~E~AL~---lEk~- 192 (309)
.+||+-..++-.+-..+++-+..|--..+- ..=+.++..|++.+.-+|++.--..++ -|..
T Consensus 22 ~aFR~~r~~dFr~~rdi~e~ll~~~~~~~a~~~k~l~i~QfLsRI~eG~~LD~~Fd~~~~~TPLESAl~v~~~I~~E~~~ 101 (200)
T cd00280 22 RAFREGRYEDFRRTRDIAEALLVGPLKLTATQLKTLRIMQFLSRIAEGKNLDCQFENDEELTPLESALMVLESIEKEFSL 101 (200)
T ss_pred HHHHccChHHHHHHHHHHHHHHhccccccccchhHhHHHHHHHHHHcCCCCCCccCCCCCcChHHHHHHHHHHHHHhcCC
Confidence 344444445555555555555554333221 122457788887665555554322222 2222
Q ss_pred ---HHHHHHHHHH-----HHhhCC-ChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCChhhHHHHhhhhcccc
Q 021703 193 ---TNEKLLNLHK-----VANKNH-DVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQGHGRNQNKISFLINVTNLTF 263 (309)
Q Consensus 193 ---vt~~L~eL~~-----vA~~~~-D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~LrrvG~g~G~~q~~~~~l~n~~~~~~ 263 (309)
+.+.++.+++ +|-+++ +-.....|+ ++.. +-+.-+.=.++.+-++.-..-|- =+.|.+|
T Consensus 102 ~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLk-r~~~-d~~~~~~r~kL~~II~~Kd~~h~----------~lqnFSy 169 (200)
T cd00280 102 PETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLK-RLFS-DPESQKLRMKLLMIIREKDPAHP----------VLQNFSY 169 (200)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHH-HHhc-CCCchhHHHHHHHHHHccccccH----------HHHhccH
Confidence 3333444433 333443 333444555 6555 22222222222222222222233 1467789
Q ss_pred cchhHHHHHhhhhccCCCccch
Q 021703 264 SPLLNMIINYLNCLLSSPSKRV 285 (309)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~ 285 (309)
+-+.-+|--|+.+.++-++...
T Consensus 170 ~~~~~ki~~~ve~~~~~~~s~f 191 (200)
T cd00280 170 SHFMQKMKSYVELVLDEKESPF 191 (200)
T ss_pred HHHHHHHHHHHHHHhccCcchH
Confidence 9999999999999998776443
No 109
>COG3685 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.10 E-value=6.6e+02 Score=22.78 Aligned_cols=140 Identities=16% Similarity=0.157 Sum_probs=97.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee--ecc-ccC
Q 021703 90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK--LQS-ILM 166 (309)
Q Consensus 90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~d~vgLpGfAkfF~~qS~EEreHAekLieY~n~RGG~V~--L~~-I~~ 166 (309)
++.+...+.|.+....|=++.-.--.|+.-++ .|-+..-|.++-.|--.|.++|-+-....|.+.. .++ +..
T Consensus 5 t~~d~f~~~LrD~y~aEkq~~kaL~kma~~~~-----~~~Lka~~E~Hl~ET~~qi~rLe~Vfe~~g~~~~~~~cda~~g 79 (167)
T COG3685 5 TLEDLFIDTLRDIYAAEKQILKALPKMARRAQ-----YPELKAAIEKHLEETKGQIERLEQVFERLGKKARRVTCDAMEG 79 (167)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35566677888888888887777777887555 5778889999988888888887655544355432 111 111
Q ss_pred C-------CccCCcCccCcHHHH--HHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 021703 167 P-------LSEFDHAEKGDALYA--MELTLSLEKLTNEKLLNLHKVANKNHDVQLADFVESKYLHEQVEAIKKISEYVAQ 237 (309)
Q Consensus 167 P-------~~ef~~~e~~d~lea--~E~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQvE~Ik~L~d~l~~ 237 (309)
. --+|.. ..++++ .-.+...|..=+.+|..|...|.+-+|-.+...|+ ..|+|+...-.+|.++.-+
T Consensus 80 iiaegq~i~~~~~~---~evlda~L~~aaq~vEhyEIA~YgtL~a~A~qlG~~~a~~ll~-~~L~eEkatd~~Lt~~a~~ 155 (167)
T COG3685 80 LIAEGQEIMEEFKS---NEVLDAGLIGAAQKVEHYEIACYGTLIAAAEQLGDDEAVKLLE-AILEEEKATDEKLTQLAPQ 155 (167)
T ss_pred HHHHHHHHHHhccc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 0 001211 122322 22336679999999999999999999999999999 8898888888888877755
Q ss_pred H
Q 021703 238 L 238 (309)
Q Consensus 238 L 238 (309)
.
T Consensus 156 ~ 156 (167)
T COG3685 156 T 156 (167)
T ss_pred H
Confidence 4
Done!