BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021705
         (309 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2GO8|A Chain A, Crystal Structure Of Yqjz_bacsu From Bacillus Subtilis.
           Northeast Structural Genomics Target Sr435
          Length = 122

 Score = 28.9 bits (63), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 131 GADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKAGAVYSQRIQRLEREKMGLEGTHD 189
           G  + +  W+S   + H+RH+  +++AA  +        Y+ R+ +++R+++  E T+D
Sbjct: 57  GRGITVSYWDSXDAINHWRHH-TEHQAAKEKGRSVWYESYAVRVAKVDRQRLFQENTND 114


>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
 pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
          Length = 481

 Score = 28.1 bits (61), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 122 NFAQRLCDLG-ADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLG 164
           NF  R+ D G A + LV++  +P  GH +    +Y+AA T L G
Sbjct: 10  NFESRISDTGSAGLMLVEF-FAPWCGHAKRLAPEYEAAATRLKG 52


>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
           Glycoprotein Chaperone Erp57
          Length = 113

 Score = 28.1 bits (61), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 122 NFAQRLCDLG-ADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLG 164
           NF  R+ D G A + LV++  +P  GH +    +Y+AA T L G
Sbjct: 10  NFESRISDTGSAGLMLVEF-FAPWCGHCKRLAPEYEAAATRLKG 52


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,646,716
Number of Sequences: 62578
Number of extensions: 410736
Number of successful extensions: 1159
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1156
Number of HSP's gapped (non-prelim): 4
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)