BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021705
         (309 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8C0D5|ETUD1_MOUSE Elongation factor Tu GTP-binding domain-containing protein 1 OS=Mus
            musculus GN=Eftud1 PE=2 SV=1
          Length = 1127

 Score = 33.5 bits (75), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 18/87 (20%)

Query: 158  AVTELLGKAGAVYSQRIQRLEREKMGLEGTHDDM---------------ADPMYNLSKAA 202
            A +++LG+  AV S+R  R+ +E+M  EGT  DM               AD +   +   
Sbjct: 998  ATSDVLGRVYAVLSKREGRVLQEEMK-EGT--DMFIIKAVLPVAESFGFADEIRKRTSGL 1054

Query: 203  VSPTRSFRGTSLVPSDHFVLPSSLEYY 229
             SP   F    ++PSD F +P++ E Y
Sbjct: 1055 ASPQLVFSHWEVIPSDPFWVPTTEEEY 1081


>sp|A0LV00|MIAB_ACIC1 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B)
           GN=miaB PE=3 SV=1
          Length = 497

 Score = 32.7 bits (73), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 37  PVDFTSDLGARFAVHPSVLNMSHPPRLVSRIANGIASGLDAFFLNRFESHRAEYWQTLYS 96
           P DFT D+ A  A  P+V+   H P         + SG DA       S+R E +  + S
Sbjct: 261 PRDFTDDVIAAMAETPNVMPQLHMP---------LQSGSDAVLRRMRRSYRKEKYLDIIS 311

Query: 97  SVRFGAPYLILCSEDDDLAPYQVIYNFAQRL 127
            VR   P   + ++     P +   +FA+ L
Sbjct: 312 RVRSAIPDAAITTDIIVGFPGETEDDFAETL 342


>sp|Q6ME42|RPOA_PARUW DNA-directed RNA polymerase subunit alpha OS=Protochlamydia
           amoebophila (strain UWE25) GN=rpoA PE=3 SV=1
          Length = 371

 Score = 31.6 bits (70), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 3/90 (3%)

Query: 165 KAGAVYSQRIQRLEREKMGLEGTHDDMADPMYNLSKAAVS--PTRSF-RGTSLVPSDHFV 221
           +A A+ S R++ +  E M +EG  +DM + + N   A +   PT    R T ++     V
Sbjct: 54  EAPAIISVRVEGIPHEYMAIEGISEDMTNIILNFKGALLRKLPTEETPRDTRILTKVVEV 113

Query: 222 LPSSLEYYDGRDVGSLQDEHKERLIHLPNP 251
               L+   G+   +LQD  +E    + NP
Sbjct: 114 TQDDLDRNQGQYCVTLQDVVQEGNFEIVNP 143


>sp|G7NY55|TOPZ1_MACFA Testis- and ovary-specific PAZ domain-containing protein 1
           OS=Macaca fascicularis GN=TOPAZ1 PE=2 SV=1
          Length = 1687

 Score = 31.6 bits (70), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 192 ADPMYNLSKAAVSPTRSFRGTSLVPSDHFVLPSSLEYYDGRDVGSLQDEH 241
           +D  YN +  ++SP+ +  G S  PS+HF  P ++     ++V SL  E+
Sbjct: 753 SDSFYNKNSCSISPSFTKHGNSSKPSNHFSEPGNI--VSNKEVASLTVEN 800


>sp|F6ULY3|TOPZ1_MACMU Testis- and ovary-specific PAZ domain-containing protein 1
           OS=Macaca mulatta GN=TOPAZ1 PE=3 SV=1
          Length = 1687

 Score = 31.2 bits (69), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 192 ADPMYNLSKAAVSPTRSFRGTSLVPSDHFVLPSSLEYYDGRDVGSLQDEH 241
           +D  YN +  ++SP+ +  G S  PS+HF  P ++     ++V SL  E+
Sbjct: 753 SDSFYNKNSCSISPSFTKHGNSSKPSNHFSEPGNI--VSNKEVASLTVEN 800


>sp|Q7M8I9|MNMA_WOLSU tRNA-specific 2-thiouridylase MnmA OS=Wolinella succinogenes
           (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 /
           FDC 602W) GN=mnmA PE=3 SV=1
          Length = 345

 Score = 31.2 bits (69), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 11/91 (12%)

Query: 149 RHYPIDYKAAVTELLGKAGAVYSQRIQRL--EREKMGLEGTHDDMADPMYNLS-----KA 201
           RH+P++ K  V +  G+    +   +Q    +R+   ++G HD    P Y LS       
Sbjct: 199 RHFPVEQKGIVQDSSGRVVGEHKGYMQYTIGKRKGFTVKGAHD----PHYVLSIDPKENR 254

Query: 202 AVSPTRSFRGTSLVPSDHFVLPSSLEYYDGR 232
            +  ++     ++V +D F LP   E+++G 
Sbjct: 255 LIVGSKEELAKNVVYADPFALPEGFEHFEGE 285


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.137    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,276,483
Number of Sequences: 539616
Number of extensions: 5166041
Number of successful extensions: 11041
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 11040
Number of HSP's gapped (non-prelim): 7
length of query: 309
length of database: 191,569,459
effective HSP length: 117
effective length of query: 192
effective length of database: 128,434,387
effective search space: 24659402304
effective search space used: 24659402304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)