Query 021705
Match_columns 309
No_of_seqs 138 out of 358
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:02:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05705 DUF829: Eukaryotic pr 99.9 7.9E-28 1.7E-32 218.3 12.2 143 17-163 91-240 (240)
2 KOG2521 Uncharacterized conser 99.9 1.6E-25 3.5E-30 216.9 3.9 128 99-228 223-350 (350)
3 PF00326 Peptidase_S9: Prolyl 97.9 5.3E-05 1.2E-09 66.9 7.9 69 100-168 143-211 (213)
4 TIGR01738 bioH putative pimelo 97.2 0.00069 1.5E-08 57.9 5.8 60 99-163 186-245 (245)
5 COG1506 DAP2 Dipeptidyl aminop 97.1 0.0019 4E-08 67.5 9.4 74 94-167 544-617 (620)
6 TIGR02427 protocat_pcaD 3-oxoa 97.0 0.0015 3.3E-08 55.9 5.8 61 99-164 191-251 (251)
7 TIGR03611 RutD pyrimidine util 97.0 0.0017 3.7E-08 56.4 6.1 61 99-164 196-256 (257)
8 PLN02652 hydrolase; alpha/beta 96.9 0.0024 5.3E-08 63.3 7.3 67 99-167 322-388 (395)
9 PRK10749 lysophospholipase L2; 96.9 0.003 6.5E-08 60.1 7.5 67 99-165 257-328 (330)
10 PLN03087 BODYGUARD 1 domain co 96.9 0.0019 4.2E-08 66.0 6.4 63 100-166 417-479 (481)
11 PRK00175 metX homoserine O-ace 96.9 0.0042 9.1E-08 60.6 8.5 68 99-167 307-375 (379)
12 PHA02857 monoglyceride lipase; 96.8 0.0033 7.2E-08 57.1 7.0 65 99-166 207-273 (276)
13 PRK11460 putative hydrolase; P 96.8 0.011 2.4E-07 53.9 10.1 76 100-181 147-222 (232)
14 PLN02965 Probable pheophorbida 96.8 0.0037 8E-08 56.6 6.8 63 99-166 191-253 (255)
15 TIGR02240 PHA_depoly_arom poly 96.7 0.004 8.7E-08 56.9 6.5 62 99-166 205-266 (276)
16 PF02230 Abhydrolase_2: Phosph 96.7 0.0084 1.8E-07 53.6 8.3 61 101-166 155-215 (216)
17 PRK10566 esterase; Provisional 96.6 0.0099 2.1E-07 53.2 8.5 61 101-166 186-248 (249)
18 PF01738 DLH: Dienelactone hyd 96.6 0.0068 1.5E-07 53.9 7.1 54 99-152 143-196 (218)
19 PRK06765 homoserine O-acetyltr 96.6 0.0081 1.8E-07 59.6 8.2 66 99-165 321-387 (389)
20 TIGR01392 homoserO_Ac_trn homo 96.5 0.0083 1.8E-07 57.5 7.6 65 99-164 286-351 (351)
21 TIGR03056 bchO_mg_che_rel puta 96.5 0.0064 1.4E-07 54.2 6.3 60 100-164 219-278 (278)
22 PLN02679 hydrolase, alpha/beta 96.4 0.013 2.8E-07 56.7 8.1 66 100-166 291-357 (360)
23 PRK03592 haloalkane dehalogena 96.4 0.009 1.9E-07 55.0 6.7 64 100-167 227-290 (295)
24 PLN02824 hydrolase, alpha/beta 96.4 0.0063 1.4E-07 56.0 5.6 62 99-165 232-293 (294)
25 PRK07581 hypothetical protein; 96.3 0.013 2.8E-07 55.5 7.2 64 100-168 274-338 (339)
26 TIGR03343 biphenyl_bphD 2-hydr 96.2 0.011 2.4E-07 53.4 6.3 61 99-164 221-281 (282)
27 PRK06489 hypothetical protein; 96.2 0.012 2.5E-07 56.7 6.5 63 99-167 290-358 (360)
28 TIGR01250 pro_imino_pep_2 prol 96.2 0.013 2.9E-07 51.4 6.3 60 99-164 229-288 (288)
29 PLN02298 hydrolase, alpha/beta 96.1 0.014 3E-07 55.0 6.6 64 99-165 249-316 (330)
30 PRK08775 homoserine O-acetyltr 96.0 0.011 2.3E-07 56.5 5.5 65 99-167 275-340 (343)
31 PRK10349 carboxylesterase BioH 96.0 0.016 3.4E-07 52.1 5.9 62 99-165 194-255 (256)
32 TIGR01607 PST-A Plasmodium sub 95.7 0.033 7.1E-07 53.5 7.5 63 100-164 269-331 (332)
33 PLN02385 hydrolase; alpha/beta 95.7 0.028 6.1E-07 53.7 6.8 65 99-166 277-345 (349)
34 PRK03204 haloalkane dehalogena 95.6 0.028 6.1E-07 52.3 6.2 58 101-163 227-285 (286)
35 PLN02578 hydrolase 95.5 0.034 7.4E-07 53.5 6.6 60 99-164 294-353 (354)
36 PRK10673 acyl-CoA esterase; Pr 95.4 0.039 8.4E-07 48.9 6.2 62 99-165 193-254 (255)
37 PRK11126 2-succinyl-6-hydroxy- 95.4 0.04 8.7E-07 48.6 6.2 56 99-165 186-241 (242)
38 PRK00870 haloalkane dehalogena 95.3 0.033 7.1E-07 51.7 5.5 64 99-165 237-300 (302)
39 PF12697 Abhydrolase_6: Alpha/ 95.2 0.028 6E-07 47.0 4.4 55 99-158 174-228 (228)
40 PRK14875 acetoin dehydrogenase 95.2 0.034 7.3E-07 52.5 5.4 59 99-165 312-370 (371)
41 TIGR03695 menH_SHCHC 2-succiny 95.1 0.056 1.2E-06 45.9 6.1 60 99-164 192-251 (251)
42 PLN03084 alpha/beta hydrolase 95.1 0.059 1.3E-06 53.4 7.1 61 99-165 323-383 (383)
43 PF03583 LIP: Secretory lipase 95.0 0.08 1.7E-06 50.4 7.4 56 99-154 217-273 (290)
44 KOG1454 Predicted hydrolase/ac 95.0 0.077 1.7E-06 51.5 7.3 62 100-166 263-324 (326)
45 TIGR02821 fghA_ester_D S-formy 94.9 0.087 1.9E-06 49.0 7.3 61 100-170 210-271 (275)
46 COG2267 PldB Lysophospholipase 94.8 0.086 1.9E-06 50.4 7.0 67 99-167 226-295 (298)
47 PF07859 Abhydrolase_3: alpha/ 94.8 0.045 9.8E-07 47.7 4.7 45 102-148 167-211 (211)
48 PLN02442 S-formylglutathione h 94.6 0.17 3.7E-06 47.5 8.5 62 99-170 215-277 (283)
49 PLN02872 triacylglycerol lipas 94.6 0.078 1.7E-06 52.9 6.4 64 101-167 325-390 (395)
50 PRK10162 acetyl esterase; Prov 94.2 0.2 4.2E-06 47.9 8.0 63 102-166 249-315 (318)
51 COG0400 Predicted esterase [Ge 94.1 0.24 5.2E-06 45.5 8.1 62 99-166 144-205 (207)
52 PRK05855 short chain dehydroge 94.0 0.067 1.5E-06 53.4 4.7 62 100-167 232-293 (582)
53 PRK13604 luxD acyl transferase 93.9 0.24 5.2E-06 48.2 8.0 83 100-197 201-283 (307)
54 TIGR01836 PHA_synth_III_C poly 93.8 0.16 3.5E-06 48.6 6.7 63 100-165 285-349 (350)
55 PLN02511 hydrolase 93.7 0.078 1.7E-06 52.2 4.4 65 99-167 296-366 (388)
56 PF12695 Abhydrolase_5: Alpha/ 93.6 0.12 2.6E-06 41.7 4.6 44 99-145 102-145 (145)
57 PLN02211 methyl indole-3-aceta 93.5 0.22 4.8E-06 46.3 6.8 59 101-165 211-269 (273)
58 PF00561 Abhydrolase_1: alpha/ 93.4 0.13 2.8E-06 44.0 4.8 57 99-160 173-229 (230)
59 PRK05077 frsA fermentation/res 93.4 0.19 4.2E-06 50.1 6.6 60 99-166 353-412 (414)
60 PLN02894 hydrolase, alpha/beta 93.0 0.33 7E-06 48.1 7.6 64 99-167 323-386 (402)
61 PRK11071 esterase YqiA; Provis 92.9 0.26 5.7E-06 43.7 6.1 55 100-164 135-189 (190)
62 PRK05371 x-prolyl-dipeptidyl a 92.9 0.49 1.1E-05 51.2 9.2 79 89-168 440-521 (767)
63 COG1073 Hydrolases of the alph 92.7 0.34 7.3E-06 43.1 6.6 63 102-166 233-297 (299)
64 TIGR03100 hydr1_PEP hydrolase, 92.7 0.26 5.6E-06 45.8 6.0 64 100-164 206-273 (274)
65 COG1647 Esterase/lipase [Gener 92.5 0.19 4.1E-06 47.3 4.7 65 99-165 179-243 (243)
66 TIGR01249 pro_imino_pep_1 prol 92.3 0.23 5E-06 46.5 5.2 57 101-165 248-304 (306)
67 PLN02980 2-oxoglutarate decarb 91.7 0.38 8.2E-06 56.2 6.9 66 99-166 1566-1639(1655)
68 COG0412 Dienelactone hydrolase 90.9 0.5 1.1E-05 43.7 5.7 48 99-146 156-203 (236)
69 COG0596 MhpC Predicted hydrola 90.6 0.75 1.6E-05 38.1 6.0 61 100-164 220-280 (282)
70 KOG4391 Predicted alpha/beta h 89.7 0.59 1.3E-05 44.3 5.0 65 99-167 219-283 (300)
71 KOG2984 Predicted hydrolase [G 89.6 0.41 8.8E-06 44.9 3.9 62 99-165 214-275 (277)
72 COG0429 Predicted hydrolase of 89.6 0.82 1.8E-05 45.2 6.2 75 88-165 258-339 (345)
73 KOG2551 Phospholipase/carboxyh 89.2 1.4 3E-05 41.4 7.1 68 92-167 154-221 (230)
74 KOG2100 Dipeptidyl aminopeptid 88.8 1.6 3.4E-05 47.4 8.2 69 100-168 680-749 (755)
75 PF08386 Abhydrolase_4: TAP-li 88.0 1.4 3E-05 35.6 5.6 60 101-165 34-93 (103)
76 PRK10115 protease 2; Provision 87.5 3.2 7E-05 44.3 9.5 65 99-165 603-674 (686)
77 PRK10985 putative hydrolase; P 87.1 0.61 1.3E-05 44.3 3.5 63 99-165 253-319 (324)
78 COG3545 Predicted esterase of 87.0 1.5 3.3E-05 39.8 5.7 58 99-165 115-178 (181)
79 KOG1455 Lysophospholipase [Lip 84.8 1.4 3E-05 43.1 4.6 64 99-164 244-310 (313)
80 KOG3043 Predicted hydrolase re 84.5 2.1 4.5E-05 40.4 5.5 47 99-145 162-209 (242)
81 COG0657 Aes Esterase/lipase [L 84.1 1.8 3.9E-05 40.6 5.1 43 101-145 245-287 (312)
82 TIGR01838 PHA_synth_I poly(R)- 82.6 1.6 3.5E-05 45.4 4.5 50 100-153 414-463 (532)
83 KOG2382 Predicted alpha/beta h 81.8 2.6 5.6E-05 41.3 5.3 71 90-166 243-313 (315)
84 KOG1552 Predicted alpha/beta h 80.8 2.1 4.6E-05 40.9 4.1 63 99-166 190-252 (258)
85 PF08840 BAAT_C: BAAT / Acyl-C 80.7 3.4 7.4E-05 37.4 5.3 46 100-145 114-162 (213)
86 PF06821 Ser_hydrolase: Serine 79.5 1.9 4.1E-05 38.0 3.2 44 100-151 113-156 (171)
87 PRK07868 acyl-CoA synthetase; 79.0 3.6 7.8E-05 45.5 5.8 63 99-165 295-360 (994)
88 KOG1838 Alpha/beta hydrolase [ 76.2 5.3 0.00011 40.6 5.6 79 88-169 306-391 (409)
89 KOG1515 Arylacetamide deacetyl 72.5 12 0.00025 37.0 6.9 49 102-152 269-317 (336)
90 COG3243 PhaC Poly(3-hydroxyalk 69.9 5.7 0.00012 40.6 4.2 64 99-166 328-399 (445)
91 KOG2112 Lysophospholipase [Lip 66.6 8 0.00017 35.8 4.1 60 101-165 144-203 (206)
92 TIGR01849 PHB_depoly_PhaZ poly 64.4 16 0.00035 37.0 6.1 66 100-165 336-405 (406)
93 COG2021 MET2 Homoserine acetyl 64.0 18 0.00038 36.4 6.2 61 100-165 305-367 (368)
94 PF08538 DUF1749: Protein of u 64.0 3.9 8.4E-05 39.9 1.6 32 99-130 230-262 (303)
95 TIGR01839 PHA_synth_II poly(R) 62.8 15 0.00033 38.8 5.7 50 100-153 440-489 (560)
96 PF11144 DUF2920: Protein of u 62.7 13 0.00028 37.8 5.1 39 101-139 293-331 (403)
97 PF05705 DUF829: Eukaryotic pr 61.4 5.7 0.00012 36.0 2.1 158 103-276 67-240 (240)
98 KOG4667 Predicted esterase [Li 56.0 12 0.00025 35.7 3.2 60 99-164 197-256 (269)
99 PF05728 UPF0227: Uncharacteri 54.4 42 0.00091 30.2 6.5 54 100-163 133-186 (187)
100 PF05448 AXE1: Acetyl xylan es 53.4 24 0.00053 34.2 5.1 69 90-165 251-319 (320)
101 COG2945 Predicted hydrolase of 52.1 29 0.00062 32.3 5.0 59 99-164 147-205 (210)
102 TIGR01840 esterase_phb esteras 51.1 17 0.00036 32.2 3.3 30 101-130 167-197 (212)
103 PF09752 DUF2048: Uncharacteri 50.8 15 0.00032 36.6 3.2 58 102-164 290-347 (348)
104 KOG4178 Soluble epoxide hydrol 50.7 48 0.001 32.8 6.6 61 100-166 257-320 (322)
105 PF06342 DUF1057: Alpha/beta h 48.1 37 0.0008 33.2 5.3 37 90-129 204-240 (297)
106 PF03959 FSH1: Serine hydrolas 46.7 35 0.00077 30.6 4.8 44 96-142 156-199 (212)
107 PF08357 SEFIR: SEFIR domain; 46.0 21 0.00045 30.0 3.0 53 103-159 2-55 (150)
108 PRK04940 hypothetical protein; 43.3 59 0.0013 29.5 5.6 54 103-165 126-179 (180)
109 COG4635 HemG Flavodoxin [Energ 39.5 72 0.0016 28.9 5.4 70 103-173 2-80 (175)
110 PF09497 Med12: Transcription 38.0 11 0.00024 28.7 0.0 20 255-274 36-55 (64)
111 KOG2624 Triglyceride lipase-ch 37.8 80 0.0017 32.0 6.2 64 100-164 331-396 (403)
112 COG3208 GrsT Predicted thioest 33.9 1.1E+02 0.0023 29.3 5.9 61 99-164 174-234 (244)
113 KOG0622 Ornithine decarboxylas 33.8 83 0.0018 32.4 5.5 43 116-162 191-233 (448)
114 COG1505 Serine proteases of th 32.4 1.7E+02 0.0037 31.5 7.7 68 100-167 579-647 (648)
115 PF10230 DUF2305: Uncharacteri 31.9 1.1E+02 0.0024 28.6 5.8 44 101-145 221-264 (266)
116 COG3040 Blc Bacterial lipocali 30.6 1E+02 0.0023 27.9 5.0 41 99-141 130-170 (174)
117 PF05152 DUF705: Protein of un 28.5 90 0.0019 30.6 4.5 49 99-147 118-174 (297)
118 PF14688 DUF4461: Domain of un 27.0 3.6E+02 0.0078 26.4 8.5 77 131-229 139-215 (313)
119 PF05321 HHA: Haemolysin expre 26.6 16 0.00035 27.3 -0.6 8 264-272 47-54 (57)
120 PF15585 Imm46: Immunity prote 26.1 1.7E+02 0.0037 25.4 5.3 99 108-224 14-123 (129)
121 KOG3253 Predicted alpha/beta h 26.0 1.8E+02 0.004 31.6 6.6 48 100-150 303-350 (784)
122 KOG4409 Predicted hydrolase/ac 24.6 2E+02 0.0044 29.0 6.3 61 101-165 303-363 (365)
123 PRK10391 oriC-binding nucleoid 23.7 21 0.00045 27.9 -0.6 15 259-273 51-66 (71)
124 PRK10945 gene expression modul 23.1 19 0.00041 28.2 -0.9 10 263-273 58-67 (72)
125 PF01676 Metalloenzyme: Metall 23.0 74 0.0016 29.5 2.8 44 120-164 129-172 (252)
126 COG4757 Predicted alpha/beta h 22.2 1.7E+02 0.0037 28.3 5.1 64 99-164 214-278 (281)
127 PF01488 Shikimate_DH: Shikima 21.5 33 0.00072 28.7 0.2 12 263-274 104-115 (135)
128 PF11339 DUF3141: Protein of u 20.4 1.4E+02 0.003 31.8 4.4 60 99-158 295-364 (581)
No 1
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=99.95 E-value=7.9e-28 Score=218.26 Aligned_cols=143 Identities=23% Similarity=0.253 Sum_probs=97.8
Q ss_pred CcccccccccCeEEEEEeCCCCCCCh-hhhhhhhhcccccccCCChhH--HHHHHHHHHhhc-chhhhcccch---hhHH
Q 021705 17 SLDDRQLVRDCFSGQIYDSSPVDFTS-DLGARFAVHPSVLNMSHPPRL--VSRIANGIASGL-DAFFLNRFES---HRAE 89 (309)
Q Consensus 17 ~~~~y~~lr~rI~G~IfDS~Pgd~t~-~~g~a~al~psv~k~~~p~~l--~~~l~~~l~~~L-~~l~~~~f~~---~~~~ 89 (309)
+.+++..+.++|+|+||||||+..+. ....+++. ++++... ..+ ...+...++... ...+...... ....
T Consensus 91 ~~~~~~~~~~~i~g~I~DS~P~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (240)
T PF05705_consen 91 SRKKFGKLLPRIKGIIFDSCPGIPTYSSSARAFSA--ALPKSSP-RWFVPLWPLLQFLLRLSIISYFIFGYPDVQEYYRR 167 (240)
T ss_pred hcccccccccccceeEEeCCCCccccccHHHHHHH--HcCccch-hhHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 34457889999999999999999887 33344544 3322211 000 111111111010 1111111111 1112
Q ss_pred HHHHHhcCCCCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHH
Q 021705 90 YWQTLYSSVRFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELL 163 (309)
Q Consensus 90 y~~~L~~~~~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL 163 (309)
+++.+.. .+.++|+|||||++|++|+|++||+|+++++++|++|+.++|++|+||+|+|+||++||++|.+||
T Consensus 168 ~~~~~~~-~~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 168 ALNDFAN-SPSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred HHhhhhc-CCCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 2333333 267799999999999999999999999999999999999999999999999999999999999997
No 2
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.91 E-value=1.6e-25 Score=216.94 Aligned_cols=128 Identities=29% Similarity=0.441 Sum_probs=119.2
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHHhhhhhHHHHHHHh
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKAGAVYSQRIQRLE 178 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~~~~~~~~~~~l~ 178 (309)
...+++||+||++|.|+|++++|+|++..+++|+.|+.++|.+|+||+|+|.||..|++++.+|++++...+..+++.+.
T Consensus 223 ~~~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~~~~~~~~~~~~~ 302 (350)
T KOG2521|consen 223 ELPWNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRSVISSYNLKNRILG 302 (350)
T ss_pred cccccceeecCCccccccHHHHHHHHHHHHhcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHhcccccCCccCccc
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999985664
Q ss_pred hhhcCCCCCCCCCCCccccccccccCCCCcccccccCCCCceeccCCccc
Q 021705 179 REKMGLEGTHDDMADPMYNLSKAAVSPTRSFRGTSLVPSDHFVLPSSLEY 228 (309)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (309)
-+.. .+.+|++++++|++.+++.|.|+++||.|+.+.|||++|+|.+|
T Consensus 303 ~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~~~ 350 (350)
T KOG2521|consen 303 IRAD--SAGDDPLTEKICSLFQVTLNLNRSSRRSPLVLDDHLEVPSSIPY 350 (350)
T ss_pred eeec--CCCCchHHHHHHHHHHHHhccchhhhcccccccceeeccccCCC
Confidence 4443 23899999999999999999999999999999999999999986
No 3
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=97.86 E-value=5.3e-05 Score=66.92 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=61.4
Q ss_pred CCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHHhhh
Q 021705 100 FGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKAGA 168 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~~~ 168 (309)
...|.|++++++|+.||++..+++++.+++.|.++++..|++..|.--...+..++.+.+.+|+++.+.
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~ 211 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLK 211 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcC
Confidence 678999999999999999999999999999999999999999999655566777889999999998653
No 4
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=97.21 E-value=0.00069 Score=57.94 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=51.6
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELL 163 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL 163 (309)
..++|.|++++++|.++|.+..+.+.+..+ +++.+.++++.|..++ .+|+++.++|.+|+
T Consensus 186 ~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fi 245 (245)
T TIGR01738 186 NISVPFLRLYGYLDGLVPAKVVPYLDKLAP----HSELYIFAKAAHAPFL-SHAEAFCALLVAFK 245 (245)
T ss_pred cCCCCEEEEeecCCcccCHHHHHHHHHhCC----CCeEEEeCCCCCCccc-cCHHHHHHHHHhhC
Confidence 467899999999999999988887765543 5788899999999888 58999999999984
No 5
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=97.15 E-value=0.0019 Score=67.53 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=63.1
Q ss_pred HhcCCCCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHHhh
Q 021705 94 LYSSVRFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKAG 167 (309)
Q Consensus 94 L~~~~~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~~ 167 (309)
+++....++|.|+|||++|.-||.++.+.+++.++.+|.+|+++.|++..|.=-...|-.+..+.+.+|+++.+
T Consensus 544 ~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~~~ 617 (620)
T COG1506 544 IFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDWFKRHL 617 (620)
T ss_pred hhhhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHHh
Confidence 55555788999999999999999999999999999999999999999999985555666666677777777654
No 6
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=96.98 E-value=0.0015 Score=55.87 Aligned_cols=61 Identities=16% Similarity=0.352 Sum_probs=51.9
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLG 164 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~ 164 (309)
..+.|.|+++++.|.++|.+.++++.+... ..+.+.++++.|..++ .+|+++.+.+.+|++
T Consensus 191 ~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~-~~p~~~~~~i~~fl~ 251 (251)
T TIGR02427 191 AIAVPTLCIAGDQDGSTPPELVREIADLVP----GARFAEIRGAGHIPCV-EQPEAFNAALRDFLR 251 (251)
T ss_pred hcCCCeEEEEeccCCcCChHHHHHHHHhCC----CceEEEECCCCCcccc-cChHHHHHHHHHHhC
Confidence 356899999999999999998888776654 3677888999999987 679999999999973
No 7
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=96.97 E-value=0.0017 Score=56.40 Aligned_cols=61 Identities=25% Similarity=0.398 Sum_probs=51.6
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLG 164 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~ 164 (309)
..++|.|++++++|.++|++..+++++... +++.+.++++.|.-++ .+|+++.+.|.+|++
T Consensus 196 ~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~-~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 196 RIQHPVLLIANRDDMLVPYTQSLRLAAALP----NAQLKLLPYGGHASNV-TDPETFNRALLDFLK 256 (257)
T ss_pred ccCccEEEEecCcCcccCHHHHHHHHHhcC----CceEEEECCCCCCccc-cCHHHHHHHHHHHhc
Confidence 467899999999999999999888776543 3577788999999654 799999999999986
No 8
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=96.90 E-value=0.0024 Score=63.31 Aligned_cols=67 Identities=7% Similarity=0.099 Sum_probs=58.5
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHHhh
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKAG 167 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~~ 167 (309)
..+.|.|+++|++|.++|++..+++++.+.. .+++.+.|+++.|.-++-.+++++.+.+.+|++..+
T Consensus 322 ~I~vPvLIi~G~~D~vvp~~~a~~l~~~~~~--~~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~ 388 (395)
T PLN02652 322 SVTVPFMVLHGTADRVTDPLASQDLYNEAAS--RHKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRL 388 (395)
T ss_pred cCCCCEEEEEeCCCCCCCHHHHHHHHHhcCC--CCceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHh
Confidence 4679999999999999999999998887654 357788899999999888899999999999999643
No 9
>PRK10749 lysophospholipase L2; Provisional
Probab=96.89 E-value=0.003 Score=60.07 Aligned_cols=67 Identities=13% Similarity=0.180 Sum_probs=57.3
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCC---cEEEEEcCCCCCccccccC--hHhHHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGA---DVKLVKWNSSPHVGHYRHY--PIDYKAAVTELLGK 165 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~---dV~~~~Fe~SpHV~H~R~h--PeeY~~aV~~FL~k 165 (309)
....|.|+|++++|.+++++..+.+++..++.|. +++.+.|+++.|.-++-.+ .++.++.+.+|+++
T Consensus 257 ~i~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~ 328 (330)
T PRK10749 257 DITTPLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNR 328 (330)
T ss_pred CCCCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhh
Confidence 4678999999999999999999999998887763 5689999999999887555 67788888888874
No 10
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=96.87 E-value=0.0019 Score=65.98 Aligned_cols=63 Identities=13% Similarity=0.257 Sum_probs=56.6
Q ss_pred CCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHHh
Q 021705 100 FGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKA 166 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~ 166 (309)
..+|.|++++++|.++|.+..+.+++... +++.+.++++.|+.++..+|++|.+.+.+||+..
T Consensus 417 I~vPtLII~Ge~D~ivP~~~~~~la~~iP----~a~l~vI~~aGH~~~v~e~p~~fa~~L~~F~~~~ 479 (481)
T PLN03087 417 LKCDVAIFHGGDDELIPVECSYAVKAKVP----RARVKVIDDKDHITIVVGRQKEFARELEEIWRRS 479 (481)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHhCC----CCEEEEeCCCCCcchhhcCHHHHHHHHHHHhhcc
Confidence 57899999999999999999988876664 3788999999999999999999999999999853
No 11
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=96.86 E-value=0.0042 Score=60.56 Aligned_cols=68 Identities=24% Similarity=0.245 Sum_probs=60.4
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEc-CCCCCccccccChHhHHHHHHHHHHHhh
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKW-NSSPHVGHYRHYPIDYKAAVTELLGKAG 167 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~F-e~SpHV~H~R~hPeeY~~aV~~FL~k~~ 167 (309)
..++|.|+|+++.|.++|.+..+++++.....+.+++.+.+ +++.|..++ .+|+++.++|.+||+++.
T Consensus 307 ~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~l-e~p~~~~~~L~~FL~~~~ 375 (379)
T PRK00175 307 RIKARFLVVSFTSDWLFPPARSREIVDALLAAGADVSYAEIDSPYGHDAFL-LDDPRYGRLVRAFLERAA 375 (379)
T ss_pred cCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEEEEeCCCCCchhHh-cCHHHHHHHHHHHHHhhh
Confidence 46789999999999999999999999999887878888777 489999776 889999999999999753
No 12
>PHA02857 monoglyceride lipase; Provisional
Probab=96.83 E-value=0.0033 Score=57.09 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=55.7
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccC--hHhHHHHHHHHHHHh
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHY--PIDYKAAVTELLGKA 166 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~h--PeeY~~aV~~FL~k~ 166 (309)
..++|.|++++++|.++|.+..+++++..+. +++++.++++.|.-|.-.. .++.++.+.+|+++.
T Consensus 207 ~i~~Pvliv~G~~D~i~~~~~~~~l~~~~~~---~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 207 KIKTPILILQGTNNEISDVSGAYYFMQHANC---NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred cCCCCEEEEecCCCCcCChHHHHHHHHHccC---CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 4679999999999999999999998877644 6899999999999997644 778888999999874
No 13
>PRK11460 putative hydrolase; Provisional
Probab=96.78 E-value=0.011 Score=53.90 Aligned_cols=76 Identities=14% Similarity=0.035 Sum_probs=60.6
Q ss_pred CCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHHhhhhhHHHHHHHhh
Q 021705 100 FGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKAGAVYSQRIQRLER 179 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~~~~~~~~~~~l~~ 179 (309)
...|.|++++++|++||++..+++++.+++.|.+|+.+.+++..|.= ..+..+.+.+|+++.+..-.-. ..|.|
T Consensus 147 ~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i-----~~~~~~~~~~~l~~~l~~~~~~-~~~~~ 220 (232)
T PRK11460 147 TATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAI-----DPRLMQFALDRLRYTVPKRYWD-EALSG 220 (232)
T ss_pred CCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCC-----CHHHHHHHHHHHHHHcchhhHH-HHhcc
Confidence 46799999999999999999999999999999999999999888873 3455677788888776443322 36655
Q ss_pred hh
Q 021705 180 EK 181 (309)
Q Consensus 180 ~~ 181 (309)
.+
T Consensus 221 ~~ 222 (232)
T PRK11460 221 GK 222 (232)
T ss_pred Cc
Confidence 55
No 14
>PLN02965 Probable pheophorbidase
Probab=96.77 E-value=0.0037 Score=56.59 Aligned_cols=63 Identities=10% Similarity=0.052 Sum_probs=53.9
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHHh
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKA 166 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~ 166 (309)
..+.|.|+|++++|.++|.+..+.+++.... .+.+.++++.|.-|+ .+|+++.++|.+|++..
T Consensus 191 ~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~~----a~~~~i~~~GH~~~~-e~p~~v~~~l~~~~~~~ 253 (255)
T PLN02965 191 AEKVPRVYIKTAKDNLFDPVRQDVMVENWPP----AQTYVLEDSDHSAFF-SVPTTLFQYLLQAVSSL 253 (255)
T ss_pred cCCCCEEEEEcCCCCCCCHHHHHHHHHhCCc----ceEEEecCCCCchhh-cCHHHHHHHHHHHHHHh
Confidence 3678999999999999999877777765553 577888999999888 89999999999998854
No 15
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=96.70 E-value=0.004 Score=56.92 Aligned_cols=62 Identities=18% Similarity=0.261 Sum_probs=51.1
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHHh
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKA 166 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~ 166 (309)
...+|.|+|+++.|+++|.+..+++++.... .+.+.+++ .|..|+ .+|+++.++|.+|+++.
T Consensus 205 ~i~~P~lii~G~~D~~v~~~~~~~l~~~~~~----~~~~~i~~-gH~~~~-e~p~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 205 KIQQPTLVLAGDDDPIIPLINMRLLAWRIPN----AELHIIDD-GHLFLI-TRAEAVAPIIMKFLAEE 266 (276)
T ss_pred cCCCCEEEEEeCCCCcCCHHHHHHHHHhCCC----CEEEEEcC-CCchhh-ccHHHHHHHHHHHHHHh
Confidence 4668999999999999999999988876643 34455565 898776 69999999999999964
No 16
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=96.68 E-value=0.0084 Score=53.60 Aligned_cols=61 Identities=23% Similarity=0.339 Sum_probs=49.5
Q ss_pred CCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHHh
Q 021705 101 GAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKA 166 (309)
Q Consensus 101 ~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~ 166 (309)
+.|.+++|+++|++||.+..++.++.+++.|.+|+.+.|++..|-- ..+..+.+.+|+++.
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i-----~~~~~~~~~~~l~~~ 215 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEI-----SPEELRDLREFLEKH 215 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS-------HHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-----CHHHHHHHHHHHhhh
Confidence 5799999999999999999999999999999999999999988853 345557899999875
No 17
>PRK10566 esterase; Provisional
Probab=96.64 E-value=0.0099 Score=53.17 Aligned_cols=61 Identities=18% Similarity=0.159 Sum_probs=52.1
Q ss_pred CCCEEEEeeCCCCccChHHHHHHHHHHHHCCC--cEEEEEcCCCCCccccccChHhHHHHHHHHHHHh
Q 021705 101 GAPYLILCSEDDDLAPYQVIYNFAQRLCDLGA--DVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKA 166 (309)
Q Consensus 101 ~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~--dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~ 166 (309)
..|.|++++++|++||++..+++.+.++..|. +++.+.++++.|.- .++ ....+.+|+++.
T Consensus 186 ~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~----~~~-~~~~~~~fl~~~ 248 (249)
T PRK10566 186 DRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRI----TPE-ALDAGVAFFRQH 248 (249)
T ss_pred CCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCcc----CHH-HHHHHHHHHHhh
Confidence 57999999999999999999999999999987 48888899999963 244 568888898864
No 18
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=96.58 E-value=0.0068 Score=53.87 Aligned_cols=54 Identities=26% Similarity=0.353 Sum_probs=42.9
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccCh
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYP 152 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hP 152 (309)
..++|.|++++++|+++|.+.++++.+.+++.|.+++.+.|++..|.=..+..+
T Consensus 143 ~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~~~ 196 (218)
T PF01738_consen 143 KIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPSRP 196 (218)
T ss_dssp G--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTTST
T ss_pred ccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCCCc
Confidence 467899999999999999999999999999999999999999999976666655
No 19
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=96.57 E-value=0.0081 Score=59.61 Aligned_cols=66 Identities=18% Similarity=0.233 Sum_probs=59.2
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCC-CCCccccccChHhHHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNS-SPHVGHYRHYPIDYKAAVTELLGK 165 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~-SpHV~H~R~hPeeY~~aV~~FL~k 165 (309)
..++|.|+|+++.|.++|.+..+++++..+..|.+++.+..++ ..|..++ .+|+++.++|.+|+++
T Consensus 321 ~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~~l-e~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 321 NIEANVLMIPCKQDLLQPPRYNYKMVDILQKQGKYAEVYEIESINGHMAGV-FDIHLFEKKIYEFLNR 387 (389)
T ss_pred cCCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCeEEEEECCCCCcchhh-cCHHHHHHHHHHHHcc
Confidence 3678999999999999999999999998887777899998885 8999988 6999999999999975
No 20
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=96.51 E-value=0.0083 Score=57.45 Aligned_cols=65 Identities=22% Similarity=0.198 Sum_probs=54.8
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEE-EcCCCCCccccccChHhHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLV-KWNSSPHVGHYRHYPIDYKAAVTELLG 164 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~-~Fe~SpHV~H~R~hPeeY~~aV~~FL~ 164 (309)
..++|.|+|+++.|.++|.+.++++++...+....|+.+ .++++.|..++ .+|+++.++|.+|++
T Consensus 286 ~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~~i~~~~GH~~~l-e~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 286 RIKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYVEIESPYGHDAFL-VETDQVEELIRGFLR 351 (351)
T ss_pred hCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEEEeCCCCCcchhh-cCHHHHHHHHHHHhC
Confidence 357899999999999999999999999988754454443 45789999988 689999999999974
No 21
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=96.49 E-value=0.0064 Score=54.16 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=50.1
Q ss_pred CCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 021705 100 FGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLG 164 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~ 164 (309)
..+|.|+|+++.|.++|.+.+++.++..+. ++.+.++++.|..++ .+|+++.++|.+|++
T Consensus 219 i~~P~lii~g~~D~~vp~~~~~~~~~~~~~----~~~~~~~~~gH~~~~-e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 219 ITIPLHLIAGEEDKAVPPDESKRAATRVPT----ATLHVVPGGGHLVHE-EQADGVVGLILQAAE 278 (278)
T ss_pred CCCCEEEEEeCCCcccCHHHHHHHHHhccC----CeEEEECCCCCcccc-cCHHHHHHHHHHHhC
Confidence 568999999999999999988887766543 567778888887665 579999999999974
No 22
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=96.38 E-value=0.013 Score=56.73 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=53.4
Q ss_pred CCCCEEEEeeCCCCccChHH-HHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHHh
Q 021705 100 FGAPYLILCSEDDDLAPYQV-IYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKA 166 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~~d-VE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~ 166 (309)
..+|.|+|+++.|.++|.+. +.++++...+.--+++.+.++++.|.-|+ .+|++..++|.+|+++.
T Consensus 291 i~~PtLii~G~~D~~~p~~~~~~~~~~~l~~~ip~~~l~~i~~aGH~~~~-E~Pe~~~~~I~~FL~~~ 357 (360)
T PLN02679 291 ISLPILVLWGDQDPFTPLDGPVGKYFSSLPSQLPNVTLYVLEGVGHCPHD-DRPDLVHEKLLPWLAQL 357 (360)
T ss_pred cCCCEEEEEeCCCCCcCchhhHHHHHHhhhccCCceEEEEcCCCCCCccc-cCHHHHHHHHHHHHHhc
Confidence 57899999999999999874 34455555544346889999999999886 56999999999999863
No 23
>PRK03592 haloalkane dehalogenase; Provisional
Probab=96.37 E-value=0.009 Score=55.03 Aligned_cols=64 Identities=14% Similarity=0.265 Sum_probs=52.7
Q ss_pred CCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHHhh
Q 021705 100 FGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKAG 167 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~~ 167 (309)
.++|.|+|++++|.+++....++++.+... +.+.+.++++.|.-|+ .+|++..+++.+|++++.
T Consensus 227 i~~P~lii~G~~D~~~~~~~~~~~~~~~~~---~~~~~~i~~~gH~~~~-e~p~~v~~~i~~fl~~~~ 290 (295)
T PRK03592 227 SDVPKLLINAEPGAILTTGAIRDWCRSWPN---QLEITVFGAGLHFAQE-DSPEEIGAAIAAWLRRLR 290 (295)
T ss_pred CCCCeEEEeccCCcccCcHHHHHHHHHhhh---hcceeeccCcchhhhh-cCHHHHHHHHHHHHHHhc
Confidence 578999999999999976666666655443 3677888999999996 689999999999998754
No 24
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=96.36 E-value=0.0063 Score=56.03 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=50.8
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGK 165 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k 165 (309)
...+|.|+|+|+.|.++|.+..+.+.+ .--..+.+.+++..|.-|+ .+|++..++|.+|+++
T Consensus 232 ~i~~P~lvi~G~~D~~~~~~~~~~~~~----~~~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~ 293 (294)
T PLN02824 232 AVKCPVLIAWGEKDPWEPVELGRAYAN----FDAVEDFIVLPGVGHCPQD-EAPELVNPLIESFVAR 293 (294)
T ss_pred hcCCCeEEEEecCCCCCChHHHHHHHh----cCCccceEEeCCCCCChhh-hCHHHHHHHHHHHHhc
Confidence 367899999999999999887766433 2223577888999999887 8899999999999975
No 25
>PRK07581 hypothetical protein; Validated
Probab=96.25 E-value=0.013 Score=55.50 Aligned_cols=64 Identities=16% Similarity=0.007 Sum_probs=53.6
Q ss_pred CCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCC-CCCccccccChHhHHHHHHHHHHHhhh
Q 021705 100 FGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNS-SPHVGHYRHYPIDYKAAVTELLGKAGA 168 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~-SpHV~H~R~hPeeY~~aV~~FL~k~~~ 168 (309)
.++|.|+|+++.|.++|.+..+.+++...+ .+.+.+++ +.|..++ ..|+++.+.|.+|+++.+.
T Consensus 274 I~~PtLvI~G~~D~~~p~~~~~~l~~~ip~----a~l~~i~~~~GH~~~~-~~~~~~~~~~~~~~~~~~~ 338 (339)
T PRK07581 274 ITAKTFVMPISTDLYFPPEDCEAEAALIPN----AELRPIESIWGHLAGF-GQNPADIAFIDAALKELLA 338 (339)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHhCCC----CeEEEeCCCCCccccc-cCcHHHHHHHHHHHHHHHh
Confidence 678999999999999999988877665533 67778888 8999876 7788999999999998653
No 26
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=96.22 E-value=0.011 Score=53.38 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=52.4
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLG 164 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~ 164 (309)
...+|.|+++++.|+++|.+..+++++.++ +++.+.++++.|.- +..+|++..++|.+|++
T Consensus 221 ~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~----~~~~~~i~~agH~~-~~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 221 EIKAKTLVTWGRDDRFVPLDHGLKLLWNMP----DAQLHVFSRCGHWA-QWEHADAFNRLVIDFLR 281 (282)
T ss_pred hCCCCEEEEEccCCCcCCchhHHHHHHhCC----CCEEEEeCCCCcCC-cccCHHHHHHHHHHHhh
Confidence 367899999999999999988888777664 47888889999995 55899999999999986
No 27
>PRK06489 hypothetical protein; Provisional
Probab=96.16 E-value=0.012 Score=56.74 Aligned_cols=63 Identities=25% Similarity=0.233 Sum_probs=51.0
Q ss_pred CCCCCEEEEeeCCCCccChHHH--HHHHHHHHHCCCcEEEEEcCCC----CCccccccChHhHHHHHHHHHHHhh
Q 021705 99 RFGAPYLILCSEDDDLAPYQVI--YNFAQRLCDLGADVKLVKWNSS----PHVGHYRHYPIDYKAAVTELLGKAG 167 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dV--E~~a~~ar~~G~dV~~~~Fe~S----pHV~H~R~hPeeY~~aV~~FL~k~~ 167 (309)
..++|.|+++++.|.++|.+.. +++++... +.+.+.++++ .|+.| .+|++|.++|.+|++.+.
T Consensus 290 ~I~~PvLvI~G~~D~~~p~~~~~~~~la~~ip----~a~l~~i~~a~~~~GH~~~--e~P~~~~~~i~~FL~~~~ 358 (360)
T PRK06489 290 KIKAPVLAINSADDERNPPETGVMEAALKRVK----HGRLVLIPASPETRGHGTT--GSAKFWKAYLAEFLAQVP 358 (360)
T ss_pred hCCCCEEEEecCCCcccChhhHHHHHHHHhCc----CCeEEEECCCCCCCCcccc--cCHHHHHHHHHHHHHhcc
Confidence 3679999999999999998864 55655543 3578888986 89885 699999999999998653
No 28
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=96.15 E-value=0.013 Score=51.40 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=48.4
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLG 164 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~ 164 (309)
..++|.|+++++.|.+ +.+..+.+++... .++.+.++++.|..++ .+|+++.+.|.+|++
T Consensus 229 ~i~~P~lii~G~~D~~-~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 229 EIKVPTLLTVGEFDTM-TPEAAREMQELIA----GSRLVVFPDGSHMTMI-EDPEVYFKLLSDFIR 288 (288)
T ss_pred ccCCCEEEEecCCCcc-CHHHHHHHHHhcc----CCeEEEeCCCCCCccc-CCHHHHHHHHHHHhC
Confidence 3578999999999985 5677776665443 3577888999999888 489999999999974
No 29
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=96.11 E-value=0.014 Score=55.00 Aligned_cols=64 Identities=13% Similarity=0.165 Sum_probs=49.8
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccCh----HhHHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYP----IDYKAAVTELLGK 165 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hP----eeY~~aV~~FL~k 165 (309)
...+|.|++++++|.++|++..+++++..+.. +.+.+.|+++.|.-++. +| +++.+.+.+|+.+
T Consensus 249 ~i~~PvLii~G~~D~ivp~~~~~~l~~~i~~~--~~~l~~~~~a~H~~~~e-~pd~~~~~~~~~i~~fl~~ 316 (330)
T PLN02298 249 DVSIPFIVLHGSADVVTDPDVSRALYEEAKSE--DKTIKIYDGMMHSLLFG-EPDENIEIVRRDILSWLNE 316 (330)
T ss_pred hcCCCEEEEecCCCCCCCHHHHHHHHHHhccC--CceEEEcCCcEeeeecC-CCHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999998876543 46788899888875543 33 4566777777775
No 30
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=96.03 E-value=0.011 Score=56.50 Aligned_cols=65 Identities=22% Similarity=0.229 Sum_probs=54.4
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCC-CCCccccccChHhHHHHHHHHHHHhh
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNS-SPHVGHYRHYPIDYKAAVTELLGKAG 167 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~-SpHV~H~R~hPeeY~~aV~~FL~k~~ 167 (309)
..++|.|+++++.|.++|.+.++++++.... +.+.+.+++ +.|..++ .+|++..++|.+|++++-
T Consensus 275 ~I~~PtLvi~G~~D~~~p~~~~~~~~~~i~p---~a~l~~i~~~aGH~~~l-E~Pe~~~~~l~~FL~~~~ 340 (343)
T PRK08775 275 AIRVPTVVVAVEGDRLVPLADLVELAEGLGP---RGSLRVLRSPYGHDAFL-KETDRIDAILTTALRSTG 340 (343)
T ss_pred cCCCCeEEEEeCCCEeeCHHHHHHHHHHcCC---CCeEEEEeCCccHHHHh-cCHHHHHHHHHHHHHhcc
Confidence 4678999999999999999988887766532 467888874 8998888 589999999999998753
No 31
>PRK10349 carboxylesterase BioH; Provisional
Probab=95.95 E-value=0.016 Score=52.10 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=51.5
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGK 165 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k 165 (309)
...+|.|+|+++.|.++|.+..+.+++... +.+.+.++++.|..++ .+|++..++|.+|-++
T Consensus 194 ~i~~P~lii~G~~D~~~~~~~~~~~~~~i~----~~~~~~i~~~gH~~~~-e~p~~f~~~l~~~~~~ 255 (256)
T PRK10349 194 NVSMPFLRLYGYLDGLVPRKVVPMLDKLWP----HSESYIFAKAAHAPFI-SHPAEFCHLLVALKQR 255 (256)
T ss_pred hcCCCeEEEecCCCccCCHHHHHHHHHhCC----CCeEEEeCCCCCCccc-cCHHHHHHHHHHHhcc
Confidence 467999999999999999887766655543 3577889999999888 7999999999998653
No 32
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=95.74 E-value=0.033 Score=53.55 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=54.5
Q ss_pred CCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 021705 100 FGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLG 164 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~ 164 (309)
...|.|++++.+|.+++++..+++++.+... +++.+.|+++.|.-+.-.++++..+.+.+|++
T Consensus 269 ~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~~--~~~l~~~~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 269 KDIPILFIHSKGDCVCSYEGTVSFYNKLSIS--NKELHTLEDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CCCCEEEEEeCCCCccCHHHHHHHHHhccCC--CcEEEEECCCCCCCccCCCHHHHHHHHHHHhh
Confidence 3689999999999999999999887765442 57888899999999988888999999999985
No 33
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=95.69 E-value=0.028 Score=53.69 Aligned_cols=65 Identities=20% Similarity=0.189 Sum_probs=50.1
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHh----HHHHHHHHHHHh
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPID----YKAAVTELLGKA 166 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPee----Y~~aV~~FL~k~ 166 (309)
...+|.|+|+|++|.++|.+..+++.+.+... +++.+.++++.|.-+ ..+|++ ..+.+.+|+++.
T Consensus 277 ~i~~P~Lii~G~~D~vv~~~~~~~l~~~~~~~--~~~l~~i~~~gH~l~-~e~p~~~~~~v~~~i~~wL~~~ 345 (349)
T PLN02385 277 EVSLPLLILHGEADKVTDPSVSKFLYEKASSS--DKKLKLYEDAYHSIL-EGEPDEMIFQVLDDIISWLDSH 345 (349)
T ss_pred cCCCCEEEEEeCCCCccChHHHHHHHHHcCCC--CceEEEeCCCeeecc-cCCChhhHHHHHHHHHHHHHHh
Confidence 46799999999999999999999988776532 578888999999754 356776 445566777643
No 34
>PRK03204 haloalkane dehalogenase; Provisional
Probab=95.57 E-value=0.028 Score=52.30 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=47.1
Q ss_pred CCCEEEEeeCCCCccChHH-HHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHH
Q 021705 101 GAPYLILCSEDDDLAPYQV-IYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELL 163 (309)
Q Consensus 101 ~~PrLyLYSkaD~LVp~~d-VE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL 163 (309)
.+|.|+|+++.|.+++... .+++.+... +.+.+.++++.|.-|+ .+|++..+.|.+|+
T Consensus 227 ~~PtliI~G~~D~~~~~~~~~~~~~~~ip----~~~~~~i~~aGH~~~~-e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 227 TKPTLLVWGMKDVAFRPKTILPRLRATFP----DHVLVELPNAKHFIQE-DAPDRIAAAIIERF 285 (286)
T ss_pred CCCeEEEecCCCcccCcHHHHHHHHHhcC----CCeEEEcCCCcccccc-cCHHHHHHHHHHhc
Confidence 6999999999999987654 344444333 3688889999999887 78999999999996
No 35
>PLN02578 hydrolase
Probab=95.49 E-value=0.034 Score=53.49 Aligned_cols=60 Identities=22% Similarity=0.249 Sum_probs=48.5
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLG 164 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~ 164 (309)
..++|.|+|+++.|.++|.+..+++.+...+ .+.+.. ++.|+.|. .+|+++.++|.+|++
T Consensus 294 ~i~~PvLiI~G~~D~~v~~~~~~~l~~~~p~----a~l~~i-~~GH~~~~-e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 294 KLSCPLLLLWGDLDPWVGPAKAEKIKAFYPD----TTLVNL-QAGHCPHD-EVPEQVNKALLEWLS 353 (354)
T ss_pred cCCCCEEEEEeCCCCCCCHHHHHHHHHhCCC----CEEEEe-CCCCCccc-cCHHHHHHHHHHHHh
Confidence 4679999999999999999998887666532 344445 58888774 699999999999986
No 36
>PRK10673 acyl-CoA esterase; Provisional
Probab=95.39 E-value=0.039 Score=48.95 Aligned_cols=62 Identities=11% Similarity=0.100 Sum_probs=50.8
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGK 165 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k 165 (309)
...+|.|+|+++.|.+++.+..+.+++... +++.+.++++.|.-+ -.+|+++.+.|.+|++.
T Consensus 193 ~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 193 AWPHPALFIRGGNSPYVTEAYRDDLLAQFP----QARAHVIAGAGHWVH-AEKPDAVLRAIRRYLND 254 (255)
T ss_pred CCCCCeEEEECCCCCCCCHHHHHHHHHhCC----CcEEEEeCCCCCeee-ccCHHHHHHHHHHHHhc
Confidence 356899999999999999877776655543 478888899999765 46799999999999974
No 37
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=95.37 E-value=0.04 Score=48.56 Aligned_cols=56 Identities=23% Similarity=0.384 Sum_probs=45.3
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGK 165 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k 165 (309)
..++|.|+++++.|.++ +..++. .+.+.+.++++.|.-|+ .+|+++.+.|.+|+++
T Consensus 186 ~i~~P~lii~G~~D~~~-----~~~~~~-----~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 186 ALTFPFYYLCGERDSKF-----QALAQQ-----LALPLHVIPNAGHNAHR-ENPAAFAASLAQILRL 241 (242)
T ss_pred ccCCCeEEEEeCCcchH-----HHHHHH-----hcCeEEEeCCCCCchhh-hChHHHHHHHHHHHhh
Confidence 35789999999999865 223322 15788889999999887 8899999999999986
No 38
>PRK00870 haloalkane dehalogenase; Provisional
Probab=95.27 E-value=0.033 Score=51.67 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=50.6
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGK 165 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k 165 (309)
...+|.|+|+++.|.++|... +++++..... -.+..+.++++.|.-| -.+|++..+.|.+|+++
T Consensus 237 ~i~~P~lii~G~~D~~~~~~~-~~~~~~~~~~-~~~~~~~i~~~gH~~~-~e~p~~~~~~l~~fl~~ 300 (302)
T PRK00870 237 RWDKPFLTAFSDSDPITGGGD-AILQKRIPGA-AGQPHPTIKGAGHFLQ-EDSGEELAEAVLEFIRA 300 (302)
T ss_pred cCCCceEEEecCCCCcccCch-HHHHhhcccc-cccceeeecCCCccch-hhChHHHHHHHHHHHhc
Confidence 467999999999999999866 7666665532 1244667899999976 48899999999999975
No 39
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=95.20 E-value=0.028 Score=47.02 Aligned_cols=55 Identities=25% Similarity=0.371 Sum_probs=44.6
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAA 158 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~a 158 (309)
..+.|.|++++++|.+++.+.++++.+... +++.+.++++.|..++. +|++..++
T Consensus 174 ~~~~pvl~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~~-~p~~~~~a 228 (228)
T PF12697_consen 174 RIKVPVLVIHGEDDPIVPPESAEELADKLP----NAELVVIPGAGHFLFLE-QPDEVAEA 228 (228)
T ss_dssp GSSSEEEEEEETTSSSSHHHHHHHHHHHST----TEEEEEETTSSSTHHHH-SHHHHHHH
T ss_pred ccCCCeEEeecCCCCCCCHHHHHHHHHHCC----CCEEEEECCCCCccHHH-CHHHHhcC
Confidence 357899999999999999777776665543 58999999999998875 88887653
No 40
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=95.16 E-value=0.034 Score=52.50 Aligned_cols=59 Identities=20% Similarity=0.329 Sum_probs=48.5
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGK 165 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k 165 (309)
..++|.|+++|++|.++|++..+.+ .-.++.+.++++.|..++ .+|++..+.|.+|+++
T Consensus 312 ~i~~Pvlii~g~~D~~vp~~~~~~l-------~~~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 312 SLAIPVLVIWGEQDRIIPAAHAQGL-------PDGVAVHVLPGAGHMPQM-EAAADVNRLLAEFLGK 370 (371)
T ss_pred cCCCCEEEEEECCCCccCHHHHhhc-------cCCCeEEEeCCCCCChhh-hCHHHHHHHHHHHhcc
Confidence 3678999999999999998766543 225788889999998665 5899999999999975
No 41
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=95.13 E-value=0.056 Score=45.89 Aligned_cols=60 Identities=23% Similarity=0.352 Sum_probs=47.1
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLG 164 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~ 164 (309)
..++|.|++++++|.+++ +.++.+.+..-+++.+.++++.|..++ .+|++..+.+.+|++
T Consensus 192 ~~~~P~l~i~g~~D~~~~-----~~~~~~~~~~~~~~~~~~~~~gH~~~~-e~~~~~~~~i~~~l~ 251 (251)
T TIGR03695 192 ALTIPVLYLCGEKDEKFV-----QIAKEMQKLLPNLTLVIIANAGHNIHL-ENPEAFAKILLAFLE 251 (251)
T ss_pred CCCCceEEEeeCcchHHH-----HHHHHHHhcCCCCcEEEEcCCCCCcCc-cChHHHHHHHHHHhC
Confidence 367899999999998752 234455555556788889999999887 569999999999873
No 42
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=95.11 E-value=0.059 Score=53.43 Aligned_cols=61 Identities=15% Similarity=0.223 Sum_probs=52.5
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGK 165 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k 165 (309)
..+.|.|+++++.|.+++.+..+++++.. +.+.+..+++.|.-|+ .+|++..++|.+|+.+
T Consensus 323 ~i~vPvLiI~G~~D~~v~~~~~~~~a~~~-----~a~l~vIp~aGH~~~~-E~Pe~v~~~I~~Fl~~ 383 (383)
T PLN03084 323 NWKTPITVCWGLRDRWLNYDGVEDFCKSS-----QHKLIELPMAGHHVQE-DCGEELGGIISGILSK 383 (383)
T ss_pred cCCCCEEEEeeCCCCCcCHHHHHHHHHhc-----CCeEEEECCCCCCcch-hCHHHHHHHHHHHhhC
Confidence 35789999999999999999888877752 4577889999999888 7999999999999863
No 43
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=94.99 E-value=0.08 Score=50.43 Aligned_cols=56 Identities=25% Similarity=0.374 Sum_probs=49.4
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCC-CcEEEEEcCCCCCccccccChHh
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLG-ADVKLVKWNSSPHVGHYRHYPID 154 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G-~dV~~~~Fe~SpHV~H~R~hPee 154 (309)
..+.|.++.+|.+|++||+...+++++++.++| .+|+.+......|.......-.+
T Consensus 217 ~P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~a~V~~~~~~~~~H~~~~~~~~~~ 273 (290)
T PF03583_consen 217 TPTVPVLIYQGTADEVVPPADTDALVAKWCAAGGADVEYVRYPGGGHLGAAFASAPD 273 (290)
T ss_pred CCCCCEEEEecCCCCCCChHHHHHHHHHHHHcCCCCEEEEecCCCChhhhhhcCcHH
Confidence 346899999999999999999999999999999 79999999999998776555433
No 44
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=94.98 E-value=0.077 Score=51.51 Aligned_cols=62 Identities=19% Similarity=0.463 Sum_probs=53.9
Q ss_pred CCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHHh
Q 021705 100 FGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKA 166 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~ 166 (309)
.++|.|++++..|+++|.+..+++.++. -.++.+.-++..|+-|+ .-|+++.+++..||...
T Consensus 263 ~~~pvlii~G~~D~~~p~~~~~~~~~~~----pn~~~~~I~~~gH~~h~-e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 263 WKCPVLIIWGDKDQIVPLELAEELKKKL----PNAELVEIPGAGHLPHL-ERPEEVAALLRSFIARL 324 (326)
T ss_pred cCCceEEEEcCcCCccCHHHHHHHHhhC----CCceEEEeCCCCccccc-CCHHHHHHHHHHHHHHh
Confidence 4489999999999999999666665555 46888888999999999 99999999999999864
No 45
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=94.91 E-value=0.087 Score=48.99 Aligned_cols=61 Identities=13% Similarity=0.006 Sum_probs=49.7
Q ss_pred CCCCEEEEeeCCCCccCh-HHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHHhhhhh
Q 021705 100 FGAPYLILCSEDDDLAPY-QVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKAGAVY 170 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~-~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~~~~~ 170 (309)
...|.++.|+++|+++|. ...+.+.+.+++.|.+|+...+++..|. |..+..|+.+.+.-+
T Consensus 210 ~~~plli~~G~~D~~v~~~~~~~~~~~~l~~~g~~v~~~~~~g~~H~----------f~~~~~~~~~~~~~~ 271 (275)
T TIGR02821 210 RHSTILIDQGTADQFLDEQLRPDAFEQACRAAGQALTLRRQAGYDHS----------YYFIASFIADHLRHH 271 (275)
T ss_pred cCCCeeEeecCCCcccCccccHHHHHHHHHHcCCCeEEEEeCCCCcc----------chhHHHhHHHHHHHH
Confidence 345777779999999999 6889999999999999999999999998 455556666555443
No 46
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=94.78 E-value=0.086 Score=50.39 Aligned_cols=67 Identities=16% Similarity=0.101 Sum_probs=56.1
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCc-EEEEEcCCCCCccccccCh--HhHHHHHHHHHHHhh
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGAD-VKLVKWNSSPHVGHYRHYP--IDYKAAVTELLGKAG 167 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~d-V~~~~Fe~SpHV~H~R~hP--eeY~~aV~~FL~k~~ 167 (309)
....|.|++++++|.++++ ++...+..++.|.. ++.+.+++.-|=-|.-.+. +++++.+..|+.+..
T Consensus 226 ~~~~PvLll~g~~D~vv~~--~~~~~~~~~~~~~~~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~ 295 (298)
T COG2267 226 AIALPVLLLQGGDDRVVDN--VEGLARFFERAGSPDKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEAL 295 (298)
T ss_pred cccCCEEEEecCCCccccC--cHHHHHHHHhcCCCCceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhc
Confidence 5678999999999999996 55555555555544 8999999999999999999 999999999998754
No 47
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=94.75 E-value=0.045 Score=47.74 Aligned_cols=45 Identities=36% Similarity=0.476 Sum_probs=39.1
Q ss_pred CCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCcccc
Q 021705 102 APYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHY 148 (309)
Q Consensus 102 ~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~ 148 (309)
.|.++++++.|.++ .+.+++++++++.|.+|+.+.+++.+|+=+|
T Consensus 167 Pp~~i~~g~~D~l~--~~~~~~~~~L~~~gv~v~~~~~~g~~H~f~~ 211 (211)
T PF07859_consen 167 PPTLIIHGEDDVLV--DDSLRFAEKLKKAGVDVELHVYPGMPHGFFM 211 (211)
T ss_dssp HEEEEEEETTSTTH--HHHHHHHHHHHHTT-EEEEEEETTEETTGGG
T ss_pred CCeeeeccccccch--HHHHHHHHHHHHCCCCEEEEEECCCeEEeeC
Confidence 48899999999986 5789999999999999999999999997443
No 48
>PLN02442 S-formylglutathione hydrolase
Probab=94.62 E-value=0.17 Score=47.54 Aligned_cols=62 Identities=21% Similarity=0.119 Sum_probs=52.1
Q ss_pred CCCCCEEEEeeCCCCccChH-HHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHHhhhhh
Q 021705 99 RFGAPYLILCSEDDDLAPYQ-VIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKAGAVY 170 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~-dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~~~~~ 170 (309)
..+.|.|+++++.|++++.. ..+.+.+.+++.|.+|+...+++..|. |..+..|+++.+.-+
T Consensus 215 ~~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~~g~~~~~~~~pg~~H~----------~~~~~~~i~~~~~~~ 277 (283)
T PLN02442 215 DVSATILIDQGEADKFLKEQLLPENFEEACKEAGAPVTLRLQPGYDHS----------YFFIATFIDDHINHH 277 (283)
T ss_pred ccCCCEEEEECCCCccccccccHHHHHHHHHHcCCCeEEEEeCCCCcc----------HHHHHHHHHHHHHHH
Confidence 35689999999999999974 578999999999999999999999997 447778887666443
No 49
>PLN02872 triacylglycerol lipase
Probab=94.56 E-value=0.078 Score=52.87 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=52.2
Q ss_pred CCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCcccc--ccChHhHHHHHHHHHHHhh
Q 021705 101 GAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHY--RHYPIDYKAAVTELLGKAG 167 (309)
Q Consensus 101 ~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~--R~hPeeY~~aV~~FL~k~~ 167 (309)
+.|.+++||++|.+++.++++++++.+.. .++.+.+++..|.-++ ...|++-.+.|.+|+++..
T Consensus 325 ~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~---~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~ 390 (395)
T PLN02872 325 SLPLWMGYGGTDGLADVTDVEHTLAELPS---KPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSLG 390 (395)
T ss_pred CccEEEEEcCCCCCCCHHHHHHHHHHCCC---ccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHhh
Confidence 57999999999999999999999887764 3567778888887443 5668888899999998643
No 50
>PRK10162 acetyl esterase; Provisional
Probab=94.17 E-value=0.2 Score=47.91 Aligned_cols=63 Identities=14% Similarity=0.008 Sum_probs=47.9
Q ss_pred CCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccC-hH---hHHHHHHHHHHHh
Q 021705 102 APYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHY-PI---DYKAAVTELLGKA 166 (309)
Q Consensus 102 ~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~h-Pe---eY~~aV~~FL~k~ 166 (309)
.|.++++++.|++. ++.+.+++.+++.|.+|+.+.|++..|.=..... -+ +-++.+.+|+++.
T Consensus 249 Pp~~i~~g~~D~L~--de~~~~~~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~ 315 (318)
T PRK10162 249 PPCFIAGAEFDPLL--DDSRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQ 315 (318)
T ss_pred CCeEEEecCCCcCc--ChHHHHHHHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHH
Confidence 59999999999997 4899999999999999999999999997543322 22 3334444555543
No 51
>COG0400 Predicted esterase [General function prediction only]
Probab=94.14 E-value=0.24 Score=45.47 Aligned_cols=62 Identities=24% Similarity=0.326 Sum_probs=51.4
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHHh
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKA 166 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~ 166 (309)
....|.|.++++.|++||...-++..+.+++.|.+|+.+.++ ..|- -.++++ +++.+|+.+.
T Consensus 144 ~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~----i~~e~~-~~~~~wl~~~ 205 (207)
T COG0400 144 LAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE-GGHE----IPPEEL-EAARSWLANT 205 (207)
T ss_pred cCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCCc----CCHHHH-HHHHHHHHhc
Confidence 356799999999999999999999999999999999999987 5553 445555 6677787754
No 52
>PRK05855 short chain dehydrogenase; Validated
Probab=94.03 E-value=0.067 Score=53.44 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=50.2
Q ss_pred CCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHHhh
Q 021705 100 FGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKAG 167 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~~ 167 (309)
.++|.|+|+++.|.++|.+..+.+++... ....+.++ +.|..|+ .+|+++.++|.+|+.+..
T Consensus 232 ~~~P~lii~G~~D~~v~~~~~~~~~~~~~----~~~~~~~~-~gH~~~~-e~p~~~~~~i~~fl~~~~ 293 (582)
T PRK05855 232 TDVPVQLIVPTGDPYVRPALYDDLSRWVP----RLWRREIK-AGHWLPM-SHPQVLAAAVAEFVDAVE 293 (582)
T ss_pred ccCceEEEEeCCCcccCHHHhccccccCC----cceEEEcc-CCCcchh-hChhHHHHHHHHHHHhcc
Confidence 67899999999999999998888765443 24556665 6798884 689999999999999754
No 53
>PRK13604 luxD acyl transferase; Provisional
Probab=93.90 E-value=0.24 Score=48.22 Aligned_cols=83 Identities=12% Similarity=0.253 Sum_probs=57.8
Q ss_pred CCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHHhhhhhHHHHHHHhh
Q 021705 100 FGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKAGAVYSQRIQRLER 179 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~~~~~~~~~~~l~~ 179 (309)
.+.|.|+|+|++|++||++.++++.+.++. .+.+++.++++-|.=+ .+ .-.+++|.+... ...+ +|+.
T Consensus 201 l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s--~~kkl~~i~Ga~H~l~--~~----~~~~~~~~~~~~---~~~~-~~~~ 268 (307)
T PRK13604 201 LDIPFIAFTANNDSWVKQSEVIDLLDSIRS--EQCKLYSLIGSSHDLG--EN----LVVLRNFYQSVT---KAAI-ALDN 268 (307)
T ss_pred cCCCEEEEEcCCCCccCHHHHHHHHHHhcc--CCcEEEEeCCCccccC--cc----hHHHHHHHHHHH---HHHh-eecC
Confidence 558999999999999999999999998764 4688999999999832 22 244566666432 1123 5555
Q ss_pred hhcCCCCCCCCCCCcccc
Q 021705 180 EKMGLEGTHDDMADPMYN 197 (309)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~ 197 (309)
..++ ...+|.||--+
T Consensus 269 ~~~~---~~~~~~~~~~~ 283 (307)
T PRK13604 269 GSLD---LDVDIIEPSFE 283 (307)
T ss_pred Cccc---ccccccCCCHH
Confidence 5543 35666666544
No 54
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=93.79 E-value=0.16 Score=48.64 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=51.4
Q ss_pred CCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccC--hHhHHHHHHHHHHH
Q 021705 100 FGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHY--PIDYKAAVTELLGK 165 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~h--PeeY~~aV~~FL~k 165 (309)
.++|.|++++++|.++|++.++++.+.... .+++.+.++ +.|.+.+... +++=|..+.+|+.+
T Consensus 285 i~~Pvliv~G~~D~i~~~~~~~~~~~~~~~--~~~~~~~~~-~gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 285 IKMPILNIYAERDHLVPPDASKALNDLVSS--EDYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHcCC--CCeEEEEcC-CCCEEEEECchhHhhhhHHHHHHHHh
Confidence 578999999999999999999988876543 456777776 7899988775 58888899999864
No 55
>PLN02511 hydrolase
Probab=93.72 E-value=0.078 Score=52.17 Aligned_cols=65 Identities=22% Similarity=0.248 Sum_probs=49.4
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHh------HHHHHHHHHHHhh
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPID------YKAAVTELLGKAG 167 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPee------Y~~aV~~FL~k~~ 167 (309)
..++|.|+|++++|+++|.+.+.... .+..-+++++..+++.|++++-. |+. +.+.|.+|++...
T Consensus 296 ~I~vPtLiI~g~dDpi~p~~~~~~~~---~~~~p~~~l~~~~~gGH~~~~E~-p~~~~~~~w~~~~i~~Fl~~~~ 366 (388)
T PLN02511 296 HVRVPLLCIQAANDPIAPARGIPRED---IKANPNCLLIVTPSGGHLGWVAG-PEAPFGAPWTDPVVMEFLEALE 366 (388)
T ss_pred cCCCCeEEEEcCCCCcCCcccCcHhH---HhcCCCEEEEECCCcceeccccC-CCCCCCCccHHHHHHHHHHHHH
Confidence 47799999999999999987653211 12334689999999999999854 554 4788999998654
No 56
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=93.58 E-value=0.12 Score=41.71 Aligned_cols=44 Identities=20% Similarity=0.310 Sum_probs=37.1
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHV 145 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV 145 (309)
..+.|.+++++..|+++|.+.++++.+.++ .+.++..++++.|.
T Consensus 102 ~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 102 KIRIPVLFIHGENDPLVPPEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp TTTSEEEEEEETT-SSSHHHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred ccCCcEEEEEECCCCcCCHHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 356799999999999999999999888887 57899999999994
No 57
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=93.47 E-value=0.22 Score=46.30 Aligned_cols=59 Identities=10% Similarity=0.109 Sum_probs=47.4
Q ss_pred CCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 021705 101 GAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGK 165 (309)
Q Consensus 101 ~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k 165 (309)
..|.|||++++|.++|.+..+.+++... |. +.+..+ +.|.-++ .+|++-..+|.++...
T Consensus 211 ~vP~l~I~g~~D~~ip~~~~~~m~~~~~--~~--~~~~l~-~gH~p~l-s~P~~~~~~i~~~a~~ 269 (273)
T PLN02211 211 KVPRVYIKTLHDHVVKPEQQEAMIKRWP--PS--QVYELE-SDHSPFF-STPFLLFGLLIKAAAS 269 (273)
T ss_pred ccceEEEEeCCCCCCCHHHHHHHHHhCC--cc--EEEEEC-CCCCccc-cCHHHHHHHHHHHHHH
Confidence 5699999999999999998888887654 23 445555 7898877 8999999988887654
No 58
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=93.44 E-value=0.13 Score=44.04 Aligned_cols=57 Identities=25% Similarity=0.367 Sum_probs=46.3
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVT 160 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~ 160 (309)
....|.|+++++.|.++|++.++.+++...+ .+.+.++++.|..++ .+|++..+.|.
T Consensus 173 ~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~~----~~~~~~~~~GH~~~~-~~~~~~~~~i~ 229 (230)
T PF00561_consen 173 NIKVPTLIIWGEDDPLVPPESSEQLAKLIPN----SQLVLIEGSGHFAFL-EGPDEFNEIII 229 (230)
T ss_dssp TTTSEEEEEEETTCSSSHHHHHHHHHHHSTT----EEEEEETTCCSTHHH-HSHHHHHHHHH
T ss_pred ccCCCeEEEEeCCCCCCCHHHHHHHHHhcCC----CEEEECCCCChHHHh-cCHHhhhhhhc
Confidence 4789999999999999999999996655554 889999999998744 56777766654
No 59
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=93.38 E-value=0.19 Score=50.11 Aligned_cols=60 Identities=18% Similarity=0.119 Sum_probs=48.7
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHHh
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKA 166 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~ 166 (309)
..++|.|++++++|+++|.++.+.+++... +.+++.+++++| -..+++....+.+|+++.
T Consensus 353 ~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~----~~~l~~i~~~~~----~e~~~~~~~~i~~wL~~~ 412 (414)
T PRK05077 353 RCPTPMLSGYWKNDPFSPEEDSRLIASSSA----DGKLLEIPFKPV----YRNFDKALQEISDWLEDR 412 (414)
T ss_pred CCCCcEEEEecCCCCCCCHHHHHHHHHhCC----CCeEEEccCCCc----cCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999997765443 466778888743 458899999999999875
No 60
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=93.03 E-value=0.33 Score=48.11 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=49.1
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHHhh
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKAG 167 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~~ 167 (309)
..+.|.|+||++.|.+++ ...++..+. .+..++.+.++++.|.-|+ .+|+++.++|.+|++..+
T Consensus 323 ~I~vP~liI~G~~D~i~~-~~~~~~~~~---~~~~~~~~~i~~aGH~~~~-E~P~~f~~~l~~~~~~~~ 386 (402)
T PLN02894 323 EWKVPTTFIYGRHDWMNY-EGAVEARKR---MKVPCEIIRVPQGGHFVFL-DNPSGFHSAVLYACRKYL 386 (402)
T ss_pred cCCCCEEEEEeCCCCCCc-HHHHHHHHH---cCCCCcEEEeCCCCCeeec-cCHHHHHHHHHHHHHHhc
Confidence 357899999999998875 444443332 3445788889999997554 589999999999998654
No 61
>PRK11071 esterase YqiA; Provisional
Probab=92.94 E-value=0.26 Score=43.69 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=44.4
Q ss_pred CCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 021705 100 FGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLG 164 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~ 164 (309)
...|.+++++++|++||++...++.+.+ .....+++.|. -.+.++|++.+.+|+.
T Consensus 135 ~~~~v~iihg~~De~V~~~~a~~~~~~~-------~~~~~~ggdH~---f~~~~~~~~~i~~fl~ 189 (190)
T PRK11071 135 SPDLIWLLQQTGDEVLDYRQAVAYYAAC-------RQTVEEGGNHA---FVGFERYFNQIVDFLG 189 (190)
T ss_pred ChhhEEEEEeCCCCcCCHHHHHHHHHhc-------ceEEECCCCcc---hhhHHHhHHHHHHHhc
Confidence 4457788999999999999999999843 23355777776 4788999999999975
No 62
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=92.89 E-value=0.49 Score=51.22 Aligned_cols=79 Identities=16% Similarity=0.245 Sum_probs=62.9
Q ss_pred HHHHHHh---cCCCCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 021705 89 EYWQTLY---SSVRFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGK 165 (309)
Q Consensus 89 ~y~~~L~---~~~~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k 165 (309)
+||+..+ +....++|.|+++|..|..++.+.+.++.+.++++|.++++... ...|+.-....+.+|.+.+.+|+..
T Consensus 440 ~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~-~g~H~~~~~~~~~d~~e~~~~Wfd~ 518 (767)
T PRK05371 440 DFWDDRNYLKDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLH-QGGHVYPNNWQSIDFRDTMNAWFTH 518 (767)
T ss_pred HHHHhCCHhhHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEe-CCCccCCCchhHHHHHHHHHHHHHh
Confidence 5676532 23368899999999999999999999999999999999888765 4568765555678999999999987
Q ss_pred hhh
Q 021705 166 AGA 168 (309)
Q Consensus 166 ~~~ 168 (309)
.+.
T Consensus 519 ~Lk 521 (767)
T PRK05371 519 KLL 521 (767)
T ss_pred ccc
Confidence 543
No 63
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=92.74 E-value=0.34 Score=43.09 Aligned_cols=63 Identities=19% Similarity=0.302 Sum_probs=54.1
Q ss_pred CCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChH--hHHHHHHHHHHHh
Q 021705 102 APYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPI--DYKAAVTELLGKA 166 (309)
Q Consensus 102 ~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPe--eY~~aV~~FL~k~ 166 (309)
.|.|++++.+|.+||....+++...++.. ..+...+++..|.--+...+. +|+..+.+|+.+.
T Consensus 233 ~P~l~~~G~~D~~vp~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~ 297 (299)
T COG1073 233 RPVLLVHGERDEVVPLRDAEDLYEAARER--PKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERH 297 (299)
T ss_pred cceEEEecCCCcccchhhhHHHHhhhccC--CceEEEecCCccccccCccHHHHHHHHHHHHHHHHh
Confidence 69999999999999999999999999886 566777778888877666665 9999999999874
No 64
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=92.68 E-value=0.26 Score=45.80 Aligned_cols=64 Identities=22% Similarity=0.162 Sum_probs=49.3
Q ss_pred CCCCEEEEeeCCCCccChHHHHH--HHHHHHH-CC-CcEEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 021705 100 FGAPYLILCSEDDDLAPYQVIYN--FAQRLCD-LG-ADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLG 164 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~~dVE~--~a~~ar~-~G-~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~ 164 (309)
...|.|++||..|..++ +..+. +...+++ .+ ..|+.+.++++.|+-+-...+++..+.|.+||+
T Consensus 206 ~~~P~ll~~g~~D~~~~-~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~ 273 (274)
T TIGR03100 206 FQGPVLFILSGNDLTAQ-EFADSVLGEPAWRGALEDPGIERVEIDGADHTFSDRVWREWVAARTTEWLR 273 (274)
T ss_pred cCCcEEEEEcCcchhHH-HHHHHhccChhhHHHhhcCCeEEEecCCCCcccccHHHHHHHHHHHHHHHh
Confidence 36899999999999852 22221 1134444 23 579999999999998899999999999999996
No 65
>COG1647 Esterase/lipase [General function prediction only]
Probab=92.50 E-value=0.19 Score=47.28 Aligned_cols=65 Identities=18% Similarity=0.181 Sum_probs=57.9
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGK 165 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k 165 (309)
-...|.+++-+++|++||.+..+-+.+....- +-++..|++|.||=-.=...+.-.++|..||++
T Consensus 179 ~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s~--~KeL~~~e~SgHVIt~D~Erd~v~e~V~~FL~~ 243 (243)
T COG1647 179 KIYSPTLVVQGRQDEMVPAESANFIYDHVESD--DKELKWLEGSGHVITLDKERDQVEEDVITFLEK 243 (243)
T ss_pred hcccchhheecccCCCCCHHHHHHHHHhccCC--cceeEEEccCCceeecchhHHHHHHHHHHHhhC
Confidence 47789999999999999999999998888764 678899999999988888899999999999873
No 66
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=92.30 E-value=0.23 Score=46.47 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=43.1
Q ss_pred CCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 021705 101 GAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGK 165 (309)
Q Consensus 101 ~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k 165 (309)
.+|.|+++++.|.++|.+..+++++... +.+.+.++++.|. -.+|+.. ++|.+|++.
T Consensus 248 ~~P~lii~g~~D~~~p~~~~~~~~~~~~----~~~~~~~~~~gH~---~~~~~~~-~~i~~~~~~ 304 (306)
T TIGR01249 248 NIPTYIVHGRYDLCCPLQSAWALHKAFP----EAELKVTNNAGHS---AFDPNNL-AALVHALET 304 (306)
T ss_pred CCCeEEEecCCCCCCCHHHHHHHHHhCC----CCEEEEECCCCCC---CCChHHH-HHHHHHHHH
Confidence 4799999999999999999888887754 3566777776666 4577777 555555553
No 67
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=91.67 E-value=0.38 Score=56.15 Aligned_cols=66 Identities=18% Similarity=0.305 Sum_probs=51.5
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHC---C-----CcEEEEEcCCCCCccccccChHhHHHHHHHHHHHh
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDL---G-----ADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKA 166 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~---G-----~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~ 166 (309)
...+|.|+|+++.|.+++ +..+++.+...+. + -.++.+.++++.|..|+ .+|+++.++|.+|+++.
T Consensus 1566 ~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~l-E~Pe~f~~~I~~FL~~~ 1639 (1655)
T PLN02980 1566 QCDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKESGNDKGKEIIEIVEIPNCGHAVHL-ENPLPVIRALRKFLTRL 1639 (1655)
T ss_pred hCCCCEEEEEECCCCccH-HHHHHHHHHccccccccccccccceEEEEECCCCCchHH-HCHHHHHHHHHHHHHhc
Confidence 367899999999999885 4555555444331 0 13788999999999987 78999999999999964
No 68
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.86 E-value=0.5 Score=43.74 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=44.4
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCcc
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVG 146 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~ 146 (309)
..++|.|+++++.|..+|.+.++.+.++.++.|.+++.+.|.+..|.=
T Consensus 156 ~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F 203 (236)
T COG0412 156 KIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGF 203 (236)
T ss_pred cccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCcccc
Confidence 467899999999999999999999999999999999999999976753
No 69
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=90.58 E-value=0.75 Score=38.15 Aligned_cols=61 Identities=30% Similarity=0.449 Sum_probs=44.2
Q ss_pred CCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 021705 100 FGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLG 164 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~ 164 (309)
...|.|++++..|.+.|....+...+..+. ..+.+.++++.|..|.. +|+.+.+.+.+|++
T Consensus 220 ~~~P~l~i~g~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~gH~~~~~-~p~~~~~~i~~~~~ 280 (282)
T COG0596 220 ITVPTLIIHGEDDPVVPAELARRLAAALPN---DARLVVIPGAGHFPHLE-APEAFAAALLAFLE 280 (282)
T ss_pred CCCCeEEEecCCCCcCCHHHHHHHHhhCCC---CceEEEeCCCCCcchhh-cHHHHHHHHHHHHh
Confidence 458999999999977777663333333332 57888899999998865 45588888877443
No 70
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=89.66 E-value=0.59 Score=44.27 Aligned_cols=65 Identities=15% Similarity=0.286 Sum_probs=54.1
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHHhh
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKAG 167 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~~ 167 (309)
.-+.|.|||-+.+|++||+.....+.+...+. .-+...|++..|-..+-. +-||+++.+|+.+..
T Consensus 219 ~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~--~Krl~eFP~gtHNDT~i~--dGYfq~i~dFlaE~~ 283 (300)
T KOG4391|consen 219 QCRMPFLFISGLKDELVPPVMMRQLYELCPSR--TKRLAEFPDGTHNDTWIC--DGYFQAIEDFLAEVV 283 (300)
T ss_pred cccCceEEeecCccccCCcHHHHHHHHhCchh--hhhheeCCCCccCceEEe--ccHHHHHHHHHHHhc
Confidence 35689999999999999999998888876554 456778999999877765 579999999999754
No 71
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=89.62 E-value=0.41 Score=44.90 Aligned_cols=62 Identities=23% Similarity=0.324 Sum_probs=51.4
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGK 165 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k 165 (309)
.+++|.|+++++.|++|+-..|. |+..++.. -+.+.+....|-=|+| +++++.+.|.+|+++
T Consensus 214 ~vkcPtli~hG~kDp~~~~~hv~-fi~~~~~~---a~~~~~peGkHn~hLr-ya~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 214 QVKCPTLIMHGGKDPFCGDPHVC-FIPVLKSL---AKVEIHPEGKHNFHLR-YAKEFNKLVLDFLKS 275 (277)
T ss_pred cccCCeeEeeCCcCCCCCCCCcc-chhhhccc---ceEEEccCCCcceeee-chHHHHHHHHHHHhc
Confidence 47899999999999999987765 45555542 5677888999998887 799999999999985
No 72
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=89.55 E-value=0.82 Score=45.21 Aligned_cols=75 Identities=24% Similarity=0.357 Sum_probs=54.9
Q ss_pred HHHHHHHhcC---CCCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCcccccc---ChHh-HHHHHH
Q 021705 88 AEYWQTLYSS---VRFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRH---YPID-YKAAVT 160 (309)
Q Consensus 88 ~~y~~~L~~~---~~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~---hPee-Y~~aV~ 160 (309)
.+||++--+- ...+.|.|+||+++|++++.++|.+.... ..-.|.++..+...|||-+.. ||.- =++.+-
T Consensus 258 ~dYYr~aSs~~~L~~Ir~PtLii~A~DDP~~~~~~iP~~~~~---~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~ 334 (345)
T COG0429 258 EDYYRQASSLPLLPKIRKPTLIINAKDDPFMPPEVIPKLQEM---LNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRIL 334 (345)
T ss_pred HHHHHhccccccccccccceEEEecCCCCCCChhhCCcchhc---CCCceEEEeecCCceEEeccCccccchhhHHHHHH
Confidence 4677762221 15789999999999999999999887765 445799999999999999883 4431 124455
Q ss_pred HHHHH
Q 021705 161 ELLGK 165 (309)
Q Consensus 161 ~FL~k 165 (309)
+|++.
T Consensus 335 ~~l~~ 339 (345)
T COG0429 335 DWLDP 339 (345)
T ss_pred HHHHH
Confidence 66654
No 73
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=89.24 E-value=1.4 Score=41.39 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=54.5
Q ss_pred HHHhcCCCCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHHhh
Q 021705 92 QTLYSSVRFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKAG 167 (309)
Q Consensus 92 ~~L~~~~~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~~ 167 (309)
...++..++.+|.|-+|++.|.+||.+.++.+++..++. .+..+.. ||+--....|.+.+.+|+....
T Consensus 154 ~~~~~~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a-----~vl~Hpg---gH~VP~~~~~~~~i~~fi~~~~ 221 (230)
T KOG2551|consen 154 DESAYKRPLSTPSLHIFGETDTIVPSERSEQLAESFKDA-----TVLEHPG---GHIVPNKAKYKEKIADFIQSFL 221 (230)
T ss_pred hhhhhccCCCCCeeEEecccceeecchHHHHHHHhcCCC-----eEEecCC---CccCCCchHHHHHHHHHHHHHH
Confidence 334444579999999999999999999999999999885 3333443 5668888899999999998654
No 74
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=88.80 E-value=1.6 Score=47.37 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=56.9
Q ss_pred CCCCE-EEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHHhhh
Q 021705 100 FGAPY-LILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKAGA 168 (309)
Q Consensus 100 ~~~Pr-LyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~~~ 168 (309)
.+.|. |+++|+.|+-|+.+.--.+++.++.+|++..+..|+++.|-=-.+.--..+...+..|++.|..
T Consensus 680 ~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~~ 749 (755)
T KOG2100|consen 680 IKTPKLLLIHGTEDDNVHFQQSAILIKALQNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCFG 749 (755)
T ss_pred hccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHHHHcC
Confidence 45566 9999999999999999999999999999999999999999744433335666777888886653
No 75
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=88.03 E-value=1.4 Score=35.63 Aligned_cols=60 Identities=27% Similarity=0.313 Sum_probs=48.9
Q ss_pred CCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 021705 101 GAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGK 165 (309)
Q Consensus 101 ~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k 165 (309)
..|.|+|-++.|+..|++.-++.++.+.. -.++.+++..|..+....+-- .++|.+||..
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~----s~lvt~~g~gHg~~~~~s~C~-~~~v~~yl~~ 93 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPG----SRLVTVDGAGHGVYAGGSPCV-DKAVDDYLLD 93 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCC----ceEEEEeccCcceecCCChHH-HHHHHHHHHc
Confidence 47999999999999999999999888775 378888999999997444444 4777777764
No 76
>PRK10115 protease 2; Provisional
Probab=87.50 E-value=3.2 Score=44.32 Aligned_cols=65 Identities=18% Similarity=0.114 Sum_probs=50.0
Q ss_pred CCCCCE-EEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEc---CCCCCccccccChHhHHHHH---HHHHHH
Q 021705 99 RFGAPY-LILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKW---NSSPHVGHYRHYPIDYKAAV---TELLGK 165 (309)
Q Consensus 99 ~~~~Pr-LyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~F---e~SpHV~H~R~hPeeY~~aV---~~FL~k 165 (309)
..+.|. |++.|.+|+-||+.+-++++++++++|.+++.+.+ .++.|- ......++++.+ ..|+-+
T Consensus 603 ~~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg--~~~~r~~~~~~~A~~~aFl~~ 674 (686)
T PRK10115 603 AQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHG--GKSGRFKSYEGVAMEYAFLIA 674 (686)
T ss_pred ccCCCceeEEecCCCCCcCchHHHHHHHHHHhcCCCCceEEEEecCCCCCC--CCcCHHHHHHHHHHHHHHHHH
Confidence 456795 55699999999999999999999999999888888 666665 345555655554 455544
No 77
>PRK10985 putative hydrolase; Provisional
Probab=87.10 E-value=0.61 Score=44.28 Aligned_cols=63 Identities=21% Similarity=0.232 Sum_probs=46.0
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccC--hHhHH--HHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHY--PIDYK--AAVTELLGK 165 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~h--PeeY~--~aV~~FL~k 165 (309)
..+.|.|+|++++|++++.+.++...+ .--+++.+.++++.|++++... +.++| +.+.+|++.
T Consensus 253 ~i~~P~lii~g~~D~~~~~~~~~~~~~----~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~ 319 (324)
T PRK10985 253 QIRKPTLIIHAKDDPFMTHEVIPKPES----LPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTT 319 (324)
T ss_pred CCCCCEEEEecCCCCCCChhhChHHHH----hCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHH
Confidence 467899999999999999887776532 2235888899999999999753 22333 445666653
No 78
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=86.95 E-value=1.5 Score=39.78 Aligned_cols=58 Identities=21% Similarity=0.327 Sum_probs=46.0
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccC------hHhHHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHY------PIDYKAAVTELLGK 165 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~h------PeeY~~aV~~FL~k 165 (309)
+..-|.+.+.|++|+.++++.-+++++.|-.. +-+..|.||+..+ |+-| ..+.+|+.+
T Consensus 115 ~lpfps~vvaSrnDp~~~~~~a~~~a~~wgs~--------lv~~g~~GHiN~~sG~g~wpeg~-~~l~~~~s~ 178 (181)
T COG3545 115 PLPFPSVVVASRNDPYVSYEHAEDLANAWGSA--------LVDVGEGGHINAESGFGPWPEGY-ALLAQLLSR 178 (181)
T ss_pred cCCCceeEEEecCCCCCCHHHHHHHHHhccHh--------heecccccccchhhcCCCcHHHH-HHHHHHhhh
Confidence 45579999999999999999999999999875 4567889999876 6666 445555543
No 79
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=84.77 E-value=1.4 Score=43.14 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=52.2
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCcccc---ccChHhHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHY---RHYPIDYKAAVTELLG 164 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~---R~hPeeY~~aV~~FL~ 164 (309)
.+..|-|++++++|.+++.+..+++.+.|... |-+.+.+++--|.-|. -..-+.+.+-|.++++
T Consensus 244 ~vtvPflilHG~dD~VTDp~~Sk~Lye~A~S~--DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~ 310 (313)
T KOG1455|consen 244 EVTVPFLILHGTDDKVTDPKVSKELYEKASSS--DKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLD 310 (313)
T ss_pred cccccEEEEecCCCcccCcHHHHHHHHhccCC--CCceeccccHHHHhhcCCCchhHHHHHHHHHHHHH
Confidence 47789999999999999999999999999987 8899999999999885 2233445555555554
No 80
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=84.54 E-value=2.1 Score=40.43 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=38.4
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCC-cEEEEEcCCCCCc
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGA-DVKLVKWNSSPHV 145 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~-dV~~~~Fe~SpHV 145 (309)
..++|.|+++++.|+++|.++|.+.-+..+++-. .-..+.|.+-.|-
T Consensus 162 ~vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~~~~~~~v~~f~g~~HG 209 (242)
T KOG3043|consen 162 NVKAPILFLFAELDEDVPPKDVKAWEEKLKENPAVGSQVKTFSGVGHG 209 (242)
T ss_pred cCCCCEEEEeecccccCCHHHHHHHHHHHhcCcccceeEEEcCCccch
Confidence 5789999999999999999999999888887621 1346778888774
No 81
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=84.08 E-value=1.8 Score=40.64 Aligned_cols=43 Identities=30% Similarity=0.253 Sum_probs=40.4
Q ss_pred CCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Q 021705 101 GAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHV 145 (309)
Q Consensus 101 ~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV 145 (309)
-.|.+++.+..|.|.+ +.+.+++.+++.|..|+...|++..|.
T Consensus 245 lPP~~i~~a~~D~l~~--~~~~~a~~L~~agv~~~~~~~~g~~H~ 287 (312)
T COG0657 245 LPPTLIQTAEFDPLRD--EGEAYAERLRAAGVPVELRVYPGMIHG 287 (312)
T ss_pred CCCEEEEecCCCcchh--HHHHHHHHHHHcCCeEEEEEeCCccee
Confidence 4689999999999998 999999999999999999999999993
No 82
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=82.58 E-value=1.6 Score=45.45 Aligned_cols=50 Identities=28% Similarity=0.414 Sum_probs=40.3
Q ss_pred CCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChH
Q 021705 100 FGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPI 153 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPe 153 (309)
.++|.|++.++.|.++|++.++..++.. + ..+...+++|.|+.|+-.-|.
T Consensus 414 I~vPvLvV~G~~D~IvP~~sa~~l~~~i---~-~~~~~vL~~sGHi~~ienPp~ 463 (532)
T TIGR01838 414 VKVPVYIIATREDHIAPWQSAYRGAALL---G-GPKTFVLGESGHIAGVVNPPS 463 (532)
T ss_pred CCCCEEEEeeCCCCcCCHHHHHHHHHHC---C-CCEEEEECCCCCchHhhCCCC
Confidence 6799999999999999999998776543 3 345567899999998776543
No 83
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=81.80 E-value=2.6 Score=41.34 Aligned_cols=71 Identities=17% Similarity=0.366 Sum_probs=59.0
Q ss_pred HHHHHhcCCCCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHHh
Q 021705 90 YWQTLYSSVRFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKA 166 (309)
Q Consensus 90 y~~~L~~~~~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~ 166 (309)
||..+.+ .+...|.||+.+..+.-++-+.-..+.+.... |+.+..+++.|.=|. ..|++..++|.+|++..
T Consensus 243 ~~~~l~~-~~~~~pvlfi~g~~S~fv~~~~~~~~~~~fp~----~e~~~ld~aGHwVh~-E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 243 YWADLED-GPYTGPVLFIKGLQSKFVPDEHYPRMEKIFPN----VEVHELDEAGHWVHL-EKPEEFIESISEFLEEP 313 (315)
T ss_pred ccccccc-cccccceeEEecCCCCCcChhHHHHHHHhccc----hheeecccCCceeec-CCHHHHHHHHHHHhccc
Confidence 4445555 46778999999999999999887777777766 888889999999886 57999999999999864
No 84
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=80.80 E-value=2.1 Score=40.88 Aligned_cols=63 Identities=14% Similarity=0.195 Sum_probs=51.5
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHHh
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKA 166 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~ 166 (309)
...+|.||++|.+|++||+..=.++.+..+++ |+-..-.+.-|..-.+ ..+|...+.+|+...
T Consensus 190 ~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~---~epl~v~g~gH~~~~~--~~~yi~~l~~f~~~~ 252 (258)
T KOG1552|consen 190 KITCPVLIIHGTDDEVVDFSHGKALYERCKEK---VEPLWVKGAGHNDIEL--YPEYIEHLRRFISSV 252 (258)
T ss_pred eccCCEEEEecccCceecccccHHHHHhcccc---CCCcEEecCCCccccc--CHHHHHHHHHHHHHh
Confidence 47789999999999999999999999999986 6555556888876544 457888888888743
No 85
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=80.67 E-value=3.4 Score=37.43 Aligned_cols=46 Identities=24% Similarity=0.418 Sum_probs=30.5
Q ss_pred CCCCEEEEeeCCCCccChHHHHHHH-HHHHHCCCc--EEEEEcCCCCCc
Q 021705 100 FGAPYLILCSEDDDLAPYQVIYNFA-QRLCDLGAD--VKLVKWNSSPHV 145 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~~dVE~~a-~~ar~~G~d--V~~~~Fe~SpHV 145 (309)
.++|.|++.|++|.+.|....-+.+ +++++.|.. ++...++++.|.
T Consensus 114 i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH~ 162 (213)
T PF08840_consen 114 IKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGHL 162 (213)
T ss_dssp --SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S-
T ss_pred cCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCce
Confidence 5689999999999999988887665 456666765 888888877665
No 86
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=79.50 E-value=1.9 Score=38.04 Aligned_cols=44 Identities=25% Similarity=0.418 Sum_probs=31.6
Q ss_pred CCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccC
Q 021705 100 FGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHY 151 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~h 151 (309)
...|.+.+.|++|+.+|++.-+++++.+.. +. ...++.||+...
T Consensus 113 l~~~~~viaS~nDp~vp~~~a~~~A~~l~a-----~~---~~~~~~GHf~~~ 156 (171)
T PF06821_consen 113 LPFPSIVIASDNDPYVPFERAQRLAQRLGA-----EL---IILGGGGHFNAA 156 (171)
T ss_dssp HHCCEEEEEETTBSSS-HHHHHHHHHHHT------EE---EEETS-TTSSGG
T ss_pred cCCCeEEEEcCCCCccCHHHHHHHHHHcCC-----Ce---EECCCCCCcccc
Confidence 335779999999999999999999988865 23 334677777654
No 87
>PRK07868 acyl-CoA synthetase; Validated
Probab=78.96 E-value=3.6 Score=45.54 Aligned_cols=63 Identities=13% Similarity=0.114 Sum_probs=51.2
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEE-EEcCCCCCcccccc--ChHhHHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKL-VKWNSSPHVGHYRH--YPIDYKAAVTELLGK 165 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~-~~Fe~SpHV~H~R~--hPeeY~~aV~~FL~k 165 (309)
..++|.|+++++.|.++|++.++.+++.... .+. +.+.+..|.+++-. =|++-|-.|.+++.+
T Consensus 295 ~i~~P~L~i~G~~D~ivp~~~~~~l~~~i~~----a~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~ 360 (994)
T PRK07868 295 DITCPVLAFVGEVDDIGQPASVRGIRRAAPN----AEVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKW 360 (994)
T ss_pred hCCCCEEEEEeCCCCCCCHHHHHHHHHhCCC----CeEEEEeCCCCCEeeeechhhhhhhChHHHHHHHH
Confidence 3568999999999999999999998765532 333 56678889988866 488999999999984
No 88
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=76.16 E-value=5.3 Score=40.55 Aligned_cols=79 Identities=22% Similarity=0.278 Sum_probs=57.2
Q ss_pred HHHHHH---HhcCCCCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCcccccc---ChHhHHHH-HH
Q 021705 88 AEYWQT---LYSSVRFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRH---YPIDYKAA-VT 160 (309)
Q Consensus 88 ~~y~~~---L~~~~~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~---hPeeY~~a-V~ 160 (309)
.+||+. ++.=...+.|.|+|.|.+|+++|...+-- +..+++ -.|-++.=....|.|-+.. .+..|... +.
T Consensus 306 deYY~~aSs~~~v~~I~VP~L~ina~DDPv~p~~~ip~--~~~~~n-p~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ 382 (409)
T KOG1838|consen 306 DEYYKKASSSNYVDKIKVPLLCINAADDPVVPEEAIPI--DDIKSN-PNVLLVITSHGGHLGFLEGLWPSARTWMDKLLV 382 (409)
T ss_pred HHHHhhcchhhhcccccccEEEEecCCCCCCCcccCCH--HHHhcC-CcEEEEEeCCCceeeeeccCCCccchhHHHHHH
Confidence 456664 22222588999999999999999875533 223322 3687887788888888888 77888888 89
Q ss_pred HHHHHhhhh
Q 021705 161 ELLGKAGAV 169 (309)
Q Consensus 161 ~FL~k~~~~ 169 (309)
+||..+...
T Consensus 383 ef~~~~~~~ 391 (409)
T KOG1838|consen 383 EFLGNAIFQ 391 (409)
T ss_pred HHHHHHHhh
Confidence 999986544
No 89
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=72.49 E-value=12 Score=37.04 Aligned_cols=49 Identities=22% Similarity=0.309 Sum_probs=43.6
Q ss_pred CCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccCh
Q 021705 102 APYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYP 152 (309)
Q Consensus 102 ~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hP 152 (309)
.|.|++-...|.|. ++-...++++++.|++|+...+++..|+.|+...-
T Consensus 269 p~tlv~~ag~D~L~--D~~~~Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~ 317 (336)
T KOG1515|consen 269 PPTLVVVAGYDVLR--DEGLAYAEKLKKAGVEVTLIHYEDGFHGFHILDPS 317 (336)
T ss_pred CceEEEEeCchhhh--hhhHHHHHHHHHcCCeEEEEEECCCeeEEEecCCc
Confidence 46999999999997 56678899999999999988999999999998775
No 90
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=69.91 E-value=5.7 Score=40.62 Aligned_cols=64 Identities=28% Similarity=0.396 Sum_probs=48.7
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChH----hHHH----HHHHHHHHh
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPI----DYKA----AVTELLGKA 166 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPe----eY~~----aV~~FL~k~ 166 (309)
...+|.+.+++++|.++||+.|-.-+.. .|.+|+.+.. +|.|.+-+-.||. +||- ....++.++
T Consensus 328 ~It~pvy~~a~~~DhI~P~~Sv~~g~~l---~~g~~~f~l~-~sGHIa~vVN~p~~~k~~~w~n~~~~~~~Wl~~a 399 (445)
T COG3243 328 DITCPVYNLAAEEDHIAPWSSVYLGARL---LGGEVTFVLS-RSGHIAGVVNPPGNAKYQYWTNLPADAEAWLSGA 399 (445)
T ss_pred hcccceEEEeecccccCCHHHHHHHHHh---cCCceEEEEe-cCceEEEEeCCcchhhhhcCCCCcchHHHHHHhh
Confidence 4779999999999999999988765544 4558998885 7999999999875 4555 444444443
No 91
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=66.64 E-value=8 Score=35.84 Aligned_cols=60 Identities=22% Similarity=0.288 Sum_probs=47.9
Q ss_pred CCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 021705 101 GAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGK 165 (309)
Q Consensus 101 ~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k 165 (309)
..|.+..|+++|++||.+--++.++.++..|..++.+-|++-.|- .-|+|- ..|..|+++
T Consensus 144 ~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h~----~~~~e~-~~~~~~~~~ 203 (206)
T KOG2112|consen 144 YTPILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGHS----TSPQEL-DDLKSWIKT 203 (206)
T ss_pred cchhheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCcccc----ccHHHH-HHHHHHHHH
Confidence 467999999999999999999999999999999777777776663 345554 556666654
No 92
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=64.41 E-value=16 Score=37.01 Aligned_cols=66 Identities=12% Similarity=0.118 Sum_probs=54.0
Q ss_pred CC-CCEEEEeeCCCCccChHHHHHHHHHHHHCCC-cEEEEEcCCCCCcccccc--ChHhHHHHHHHHHHH
Q 021705 100 FG-APYLILCSEDDDLAPYQVIYNFAQRLCDLGA-DVKLVKWNSSPHVGHYRH--YPIDYKAAVTELLGK 165 (309)
Q Consensus 100 ~~-~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~-dV~~~~Fe~SpHV~H~R~--hPeeY~~aV~~FL~k 165 (309)
.+ +|.|.+.++.|.|+|++..+...+.....+- +.+...+.+..|+|-+.. -+++=|-.|.+|+.+
T Consensus 336 I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~ 405 (406)
T TIGR01849 336 ITRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRR 405 (406)
T ss_pred CcccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHh
Confidence 55 9999999999999999999999988655542 456677778889998865 477788888888864
No 93
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=64.03 E-value=18 Score=36.37 Aligned_cols=61 Identities=26% Similarity=0.267 Sum_probs=49.5
Q ss_pred CCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCcccc--ccChHhHHHHHHHHHHH
Q 021705 100 FGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHY--RHYPIDYKAAVTELLGK 165 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~--R~hPeeY~~aV~~FL~k 165 (309)
.++|.|.+-...|-+-|.++.++.++.++..|. ++.+ +|+| ||- -.+.+.|-..|.+||+.
T Consensus 305 i~~~~lv~gi~sD~lfp~~~~~~~~~~L~~~~~---~~~i-~S~~-GHDaFL~e~~~~~~~i~~fL~~ 367 (368)
T COG2021 305 IKAPVLVVGITSDWLFPPELQRALAEALPAAGA---LREI-DSPY-GHDAFLVESEAVGPLIRKFLAL 367 (368)
T ss_pred CccCEEEEEecccccCCHHHHHHHHHhccccCc---eEEe-cCCC-CchhhhcchhhhhHHHHHHhhc
Confidence 678999999999999999999999999998876 4444 4666 663 34566788999999874
No 94
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=63.99 E-value=3.9 Score=39.92 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=9.1
Q ss_pred CCCCCEEEEeeCCCCccC-hHHHHHHHHHHHHC
Q 021705 99 RFGAPYLILCSEDDDLAP-YQVIYNFAQRLCDL 130 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp-~~dVE~~a~~ar~~ 130 (309)
.+..|.|+|||.+|+-|| +-+.++++++|++.
T Consensus 230 ~v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a 262 (303)
T PF08538_consen 230 KVSKPLLVLYSGKDEYVPPWVDKEALLERWKAA 262 (303)
T ss_dssp G--S-EEEEEE--TT------------------
T ss_pred cCCCceEEEecCCCceecccccccccccccccc
Confidence 466799999999999996 47889999999975
No 95
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=62.79 E-value=15 Score=38.81 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=40.7
Q ss_pred CCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChH
Q 021705 100 FGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPI 153 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPe 153 (309)
.++|.+.+.++.|.||||+.+...++.. |.+++.+.. .|.|++-+-.-|.
T Consensus 440 I~~Pvl~va~~~DHIvPw~s~~~~~~l~---gs~~~fvl~-~gGHIggivnpP~ 489 (560)
T TIGR01839 440 VKCDSFSVAGTNDHITPWDAVYRSALLL---GGKRRFVLS-NSGHIQSILNPPG 489 (560)
T ss_pred CCCCeEEEecCcCCcCCHHHHHHHHHHc---CCCeEEEec-CCCccccccCCCC
Confidence 6799999999999999999998887644 457887775 6889987766543
No 96
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=62.68 E-value=13 Score=37.76 Aligned_cols=39 Identities=31% Similarity=0.274 Sum_probs=35.4
Q ss_pred CCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEc
Q 021705 101 GAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKW 139 (309)
Q Consensus 101 ~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~F 139 (309)
.+-.+.+||..|+++|.++=+++++..+++|.+|++...
T Consensus 293 ~~~yvsYHs~~D~~~p~~~K~~l~~~l~~lgfda~l~lI 331 (403)
T PF11144_consen 293 KIIYVSYHSIKDDLAPAEDKEELYEILKNLGFDATLHLI 331 (403)
T ss_pred ceEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 345566899999999999999999999999999999887
No 97
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=61.43 E-value=5.7 Score=35.97 Aligned_cols=158 Identities=15% Similarity=0.090 Sum_probs=92.4
Q ss_pred CEEEEeeCCC-CccChHHHHHHHHHHHHCC--Cc-EEEEEcCCCCCccccccChHhHHHHHHHHH-------HHhhhhhH
Q 021705 103 PYLILCSEDD-DLAPYQVIYNFAQRLCDLG--AD-VKLVKWNSSPHVGHYRHYPIDYKAAVTELL-------GKAGAVYS 171 (309)
Q Consensus 103 PrLyLYSkaD-~LVp~~dVE~~a~~ar~~G--~d-V~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL-------~k~~~~~~ 171 (309)
+.+++++=.. -..-+..+.+..+...+.+ .+ +....|+.+|+..++ ...-+++.+..... ...+....
T Consensus 67 ~~il~H~FSnGG~~~~~~l~~~~~~~~~~~~~~~~i~g~I~DS~P~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (240)
T PF05705_consen 67 PPILFHSFSNGGSFLYSQLLEAYQSRKKFGKLLPRIKGIIFDSCPGIPTY-SSSARAFSAALPKSSPRWFVPLWPLLQFL 145 (240)
T ss_pred CCEEEEEEECchHHHHHHHHHHHHhcccccccccccceeEEeCCCCcccc-ccHHHHHHHHcCccchhhHHHHHHHHHHH
Confidence 5777777665 4444555554444444222 23 889999999999999 55666665553221 11111111
Q ss_pred HHHHHHhhhhcCCCCCCCCCCCccccccccccCCCCcccccccCC--CCceeccCCcc-cccCCCCCCchhhhcccc--c
Q 021705 172 QRIQRLEREKMGLEGTHDDMADPMYNLSKAAVSPTRSFRGTSLVP--SDHFVLPSSLE-YYDGRDVGSLQDEHKERL--I 246 (309)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~ 246 (309)
.....+ -.. ++...+.....++.++.....| +-+.|+-|..+ ....++++...+|+|+.= +
T Consensus 146 ~~~~~~-~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V 211 (240)
T PF05705_consen 146 LRLSII-SYF-------------IFGYPDVQEYYRRALNDFANSPSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDV 211 (240)
T ss_pred HHHHHH-HHH-------------HhcCCcHHHHHHHHHhhhhcCCCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeE
Confidence 111011 111 2222333333344455555555 44788888887 556788888888887733 2
Q ss_pred CCCCCCCCCcccchhhhhccccccCCCcCc
Q 021705 247 HLPNPPSINTHGVLGQILFDVCVPKNVEGW 276 (309)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (309)
..-.. .-+||-...+.-.|.|+.+..|.|
T Consensus 212 ~~~~f-~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 212 RAEKF-EDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred EEecC-CCCchhhhcccCHHHHHHHHHhhC
Confidence 22233 347999999999999999988887
No 98
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=55.99 E-value=12 Score=35.67 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=47.6
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLG 164 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~ 164 (309)
+..||.|-.|+..|.+||.++-.+||+..+. -+++.-++..|. |-.|..+-...+..|.+
T Consensus 197 d~~C~VLTvhGs~D~IVPve~AkefAk~i~n----H~L~iIEgADHn--yt~~q~~l~~lgl~f~k 256 (269)
T KOG4667|consen 197 DKQCRVLTVHGSEDEIVPVEDAKEFAKIIPN----HKLEIIEGADHN--YTGHQSQLVSLGLEFIK 256 (269)
T ss_pred CccCceEEEeccCCceeechhHHHHHHhccC----CceEEecCCCcC--ccchhhhHhhhcceeEE
Confidence 6789999999999999999999999998887 466777899997 55555555555555543
No 99
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=54.38 E-value=42 Score=30.16 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=39.4
Q ss_pred CCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHH
Q 021705 100 FGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELL 163 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL 163 (309)
...+.++|.++.|++++|+.-.++.+ |. .....+|+. |--.+-++|...|.+|+
T Consensus 133 ~~~~~lvll~~~DEvLd~~~a~~~~~-----~~--~~~i~~ggd---H~f~~f~~~l~~i~~f~ 186 (187)
T PF05728_consen 133 NPERYLVLLQTGDEVLDYREAVAKYR-----GC--AQIIEEGGD---HSFQDFEEYLPQIIAFL 186 (187)
T ss_pred CCccEEEEEecCCcccCHHHHHHHhc-----Cc--eEEEEeCCC---CCCccHHHHHHHHHHhh
Confidence 44699999999999999955443332 22 233456774 45889999999999986
No 100
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=53.38 E-value=24 Score=34.23 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=46.2
Q ss_pred HHHHHhcCCCCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 021705 90 YWQTLYSSVRFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGK 165 (309)
Q Consensus 90 y~~~L~~~~~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k 165 (309)
|.+..|-+...++|.|+-.|-.|++||+..+-+..+.+.. +.+.+.++...|= ..++..++...+|+++
T Consensus 251 Y~D~~nfA~ri~~pvl~~~gl~D~~cPP~t~fA~yN~i~~---~K~l~vyp~~~He----~~~~~~~~~~~~~l~~ 319 (320)
T PF05448_consen 251 YFDAVNFARRIKCPVLFSVGLQDPVCPPSTQFAAYNAIPG---PKELVVYPEYGHE----YGPEFQEDKQLNFLKE 319 (320)
T ss_dssp TT-HHHHGGG--SEEEEEEETT-SSS-HHHHHHHHCC--S---SEEEEEETT--SS----TTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHcCCCEEEEEecCCCCCCchhHHHHHhccCC---CeeEEeccCcCCC----chhhHHHHHHHHHHhc
Confidence 4444444557899999999999999999999999988865 5899999988774 2333437888888764
No 101
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=52.13 E-value=29 Score=32.32 Aligned_cols=59 Identities=14% Similarity=0.344 Sum_probs=45.3
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLG 164 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~ 164 (309)
|-.+|-|+++.++|+++++..+-+.++- .+++.+.-.++.|-=|-+. ++-.++|.+||+
T Consensus 147 P~P~~~lvi~g~~Ddvv~l~~~l~~~~~-----~~~~~i~i~~a~HFF~gKl--~~l~~~i~~~l~ 205 (210)
T COG2945 147 PCPSPGLVIQGDADDVVDLVAVLKWQES-----IKITVITIPGADHFFHGKL--IELRDTIADFLE 205 (210)
T ss_pred CCCCCceeEecChhhhhcHHHHHHhhcC-----CCCceEEecCCCceecccH--HHHHHHHHHHhh
Confidence 6678999999999988877766655443 5788888899999866554 456678888885
No 102
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=51.07 E-value=17 Score=32.18 Aligned_cols=30 Identities=7% Similarity=0.051 Sum_probs=26.5
Q ss_pred CCC-EEEEeeCCCCccChHHHHHHHHHHHHC
Q 021705 101 GAP-YLILCSEDDDLAPYQVIYNFAQRLCDL 130 (309)
Q Consensus 101 ~~P-rLyLYSkaD~LVp~~dVE~~a~~ar~~ 130 (309)
..| .+++++++|++||.+..+++++.+++.
T Consensus 167 ~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 167 PTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred CCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 345 568999999999999999999999987
No 103
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=50.81 E-value=15 Score=36.62 Aligned_cols=58 Identities=12% Similarity=0.279 Sum_probs=47.9
Q ss_pred CCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 021705 102 APYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLG 164 (309)
Q Consensus 102 ~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~ 164 (309)
....+++.++|..||-..|.++.+.|.. ..|+. -+..||+-+-.|.+-|.++|.+-++
T Consensus 290 ~~ii~V~A~~DaYVPr~~v~~Lq~~WPG--sEvR~---l~gGHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 290 SAIIFVAAKNDAYVPRHGVLSLQEIWPG--SEVRY---LPGGHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred CcEEEEEecCceEechhhcchHHHhCCC--CeEEE---ecCCcEEEeeechHHHHHHHHHHhh
Confidence 3566789999999999999988888864 34444 3569999999999999999988765
No 104
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=50.66 E-value=48 Score=32.79 Aligned_cols=61 Identities=18% Similarity=0.286 Sum_probs=43.8
Q ss_pred CCCCEEEEeeCCCCccChHHHHHHHHHHHHCCC-cEEEEEcCCCCCcccccc--ChHhHHHHHHHHHHHh
Q 021705 100 FGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGA-DVKLVKWNSSPHVGHYRH--YPIDYKAAVTELLGKA 166 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~-dV~~~~Fe~SpHV~H~R~--hPeeY~~aV~~FL~k~ 166 (309)
...|.+++|+..|.+-++. .|.+..++.=- .-+.+.. .|++|+-+ +|++-.+++.+|+++.
T Consensus 257 i~iPv~fi~G~~D~v~~~p---~~~~~~rk~vp~l~~~vv~---~~~gH~vqqe~p~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 257 ITIPVLFIWGDLDPVLPYP---IFGELYRKDVPRLTERVVI---EGIGHFVQQEKPQEVNQAILGFINSF 320 (322)
T ss_pred cccceEEEEecCcccccch---hHHHHHHHhhccccceEEe---cCCcccccccCHHHHHHHHHHHHHhh
Confidence 6689999999999999988 44444444311 1134443 46777765 6999999999999864
No 105
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=48.08 E-value=37 Score=33.21 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=29.5
Q ss_pred HHHHHhcCCCCCCCEEEEeeCCCCccChHHHHHHHHHHHH
Q 021705 90 YWQTLYSSVRFGAPYLILCSEDDDLAPYQVIYNFAQRLCD 129 (309)
Q Consensus 90 y~~~L~~~~~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~ 129 (309)
|-+.++. ...|.||.||.+|.||.-+.+++++...+.
T Consensus 204 ~I~~ln~---~~ikvli~ygg~DhLIEeeI~~E~a~~f~~ 240 (297)
T PF06342_consen 204 YIDKLNK---KPIKVLIAYGGKDHLIEEEISFEFAMKFKG 240 (297)
T ss_pred HHHHhcc---CCCcEEEEEcCcchhhHHHHHHHHHHHhCC
Confidence 3344444 338999999999999999999999987754
No 106
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=46.65 E-value=35 Score=30.55 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=29.9
Q ss_pred cCCCCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCC
Q 021705 96 SSVRFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSS 142 (309)
Q Consensus 96 ~~~~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~S 142 (309)
.......|.|-+++++|.+++.+..+.+++..... .+...+++.
T Consensus 156 ~~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~---~~v~~h~gG 199 (212)
T PF03959_consen 156 DEPKISIPTLHVIGENDPVVPPERSEALAEMFDPD---ARVIEHDGG 199 (212)
T ss_dssp --TT---EEEEEEETT-SSS-HHHHHHHHHHHHHH---EEEEEESSS
T ss_pred ccccCCCCeEEEEeCCCCCcchHHHHHHHHhccCC---cEEEEECCC
Confidence 33457899999999999999999999999999885 445555543
No 107
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=45.96 E-value=21 Score=29.97 Aligned_cols=53 Identities=23% Similarity=0.278 Sum_probs=38.8
Q ss_pred CEEEEeeCCCCccChHHHHHHHHHHHHC-CCcEEEEEcCCCCCccccccChHhHHHHH
Q 021705 103 PYLILCSEDDDLAPYQVIYNFAQRLCDL-GADVKLVKWNSSPHVGHYRHYPIDYKAAV 159 (309)
Q Consensus 103 PrLyLYSkaD~LVp~~dVE~~a~~ar~~-G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV 159 (309)
+.++.||. |.--.-+-|.++|+.+++. |++|..-.|+... + -+..+.++...-
T Consensus 2 kVfI~Ys~-d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~-i--~~~g~~~W~~~~ 55 (150)
T PF08357_consen 2 KVFISYSH-DSEEHKEWVLALAEFLRQNCGIDVILDQWELNE-I--ARQGPPRWMERQ 55 (150)
T ss_pred eEEEEeCC-CCHHHHHHHHHHHHHHHhccCCceeecHHhhcc-c--ccCCHHHHHHHH
Confidence 46889999 5555568899999999999 9999999987532 1 134566665444
No 108
>PRK04940 hypothetical protein; Provisional
Probab=43.27 E-value=59 Score=29.47 Aligned_cols=54 Identities=11% Similarity=0.017 Sum_probs=43.5
Q ss_pred CEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 021705 103 PYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGK 165 (309)
Q Consensus 103 PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k 165 (309)
..+.|-.+.|++.+|++..+..+..- . ...++++.|- -.+-++|...|.+|+++
T Consensus 126 r~~vllq~gDEvLDyr~a~~~y~~~y----~--~~v~~GGdH~---f~~fe~~l~~I~~F~~~ 179 (180)
T PRK04940 126 RCLVILSRNDEVLDSQRTAEELHPYY----E--IVWDEEQTHK---FKNISPHLQRIKAFKTL 179 (180)
T ss_pred cEEEEEeCCCcccCHHHHHHHhccCc----e--EEEECCCCCC---CCCHHHHHHHHHHHHhc
Confidence 34889999999999998887764441 2 4567898887 88999999999999864
No 109
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=39.52 E-value=72 Score=28.89 Aligned_cols=70 Identities=21% Similarity=0.282 Sum_probs=46.9
Q ss_pred CEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCC--CCccccc-------cChHhHHHHHHHHHHHhhhhhHHH
Q 021705 103 PYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSS--PHVGHYR-------HYPIDYKAAVTELLGKAGAVYSQR 173 (309)
Q Consensus 103 PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~S--pHV~H~R-------~hPeeY~~aV~~FL~k~~~~~~~~ 173 (309)
..|++||..|--. -+..+..|..+++.|.+|+.+.-..- +--+|+- -+-..|-+++.+|+++-......+
T Consensus 2 k~LIlYstr~GqT-~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAsI~~~h~~~~~~~Fv~k~~e~L~~k 80 (175)
T COG4635 2 KTLILYSTRDGQT-RKIAEYIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGASIRYGHFHEAVQSFVKKHAEALSTK 80 (175)
T ss_pred ceEEEEecCCCcH-HHHHHHHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecchhhhhhHHHHHHHHHHHHHHHhcC
Confidence 4799999999875 56778889999999999887753211 1111211 134567788999999865544444
No 110
>PF09497 Med12: Transcription mediator complex subunit Med12; InterPro: IPR019035 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med12 is a component of the evolutionarily conserved Mediator complex []. The Med12 subunit may specifically regulate transcription of targets of the Wnt signaling pathway and SHH signaling pathway. Med12 is a negative regulator of the Gli3-dependent sonic hedgehog signaling pathway via its interaction with Gli3 within the Mediator. A complex is formed between Med12, Med13, CDK8 and CycC which is responsible for suppression of transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=38.00 E-value=11 Score=28.73 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=18.4
Q ss_pred CcccchhhhhccccccCCCc
Q 021705 255 NTHGVLGQILFDVCVPKNVE 274 (309)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~ 274 (309)
=|||.=|+.|||.|.-+||.
T Consensus 36 iPhg~k~~~ll~~l~~~~VP 55 (64)
T PF09497_consen 36 IPHGIKKEELLEQLCEYNVP 55 (64)
T ss_pred CCCcccHHHHHHHHHHcCCC
Confidence 48999999999999999986
No 111
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=37.80 E-value=80 Score=32.04 Aligned_cols=64 Identities=16% Similarity=0.062 Sum_probs=43.1
Q ss_pred CCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccC--hHhHHHHHHHHHH
Q 021705 100 FGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHY--PIDYKAAVTELLG 164 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~h--PeeY~~aV~~FL~ 164 (309)
..+|..++||++|-|+..+||+.+......... ...+.+++=.|.-=+=.+ +++=.+-|.+.++
T Consensus 331 i~~P~~l~~g~~D~l~~~~DV~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~ 396 (403)
T KOG2624|consen 331 IKVPTALYYGDNDWLADPEDVLILLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLR 396 (403)
T ss_pred cccCEEEEecCCcccCCHHHHHHHHHhcccccc-cccccCCCccceeeeeccCcHHHHHHHHHHHHH
Confidence 478999999999999999999999988887644 333334555555444333 4443344444444
No 112
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.93 E-value=1.1e+02 Score=29.28 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=47.6
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLG 164 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~ 164 (309)
+..+|...+.+..|.+|.++++.+..+.++. +.+++.|+|. |- ++++..++-.+.+.+.|.
T Consensus 174 pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~---~f~l~~fdGg-HF-fl~~~~~~v~~~i~~~l~ 234 (244)
T COG3208 174 PLACPIHAFGGEKDHEVSRDELGAWREHTKG---DFTLRVFDGG-HF-FLNQQREEVLARLEQHLA 234 (244)
T ss_pred CcCcceEEeccCcchhccHHHHHHHHHhhcC---CceEEEecCc-ce-ehhhhHHHHHHHHHHHhh
Confidence 7889999999999999999998887777665 6899999863 43 455666666666666664
No 113
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=33.81 E-value=83 Score=32.38 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=39.1
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHH
Q 021705 116 PYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTEL 162 (309)
Q Consensus 116 p~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~F 162 (309)
..+.++.+.+.++++|.+|..+.| |||-...+++-|..|+.+-
T Consensus 191 ~~~~~~~lLd~ak~l~lnvvGvsf----HvGSgc~d~~~y~~Ai~dA 233 (448)
T KOG0622|consen 191 SLDNCRHLLDMAKELELNVVGVSF----HVGSGCTDLQAYRDAISDA 233 (448)
T ss_pred CHHHHHHHHHHHHHcCceEEEEEE----EecCCCCCHHHHHHHHHHH
Confidence 568999999999999999999987 8999999999999998754
No 114
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=32.42 E-value=1.7e+02 Score=31.54 Aligned_cols=68 Identities=25% Similarity=0.146 Sum_probs=56.7
Q ss_pred CCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccCh-HhHHHHHHHHHHHhh
Q 021705 100 FGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYP-IDYKAAVTELLGKAG 167 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hP-eeY~~aV~~FL~k~~ 167 (309)
.-.|.|+--|..|+=|.+.+-..|++++++.|.+|-...=.++.|.+---.-+ .+++.-+.-|+.+.+
T Consensus 579 kYP~~LITTs~~DDRVHPaHarKfaa~L~e~~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L 647 (648)
T COG1505 579 KYPPTLITTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTL 647 (648)
T ss_pred cCCCeEEEcccccccccchHHHHHHHHHHhcCCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHhh
Confidence 33689999999999999999999999999999999887778899988665555 677788888887643
No 115
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=31.95 E-value=1.1e+02 Score=28.65 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=36.3
Q ss_pred CCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Q 021705 101 GAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHV 145 (309)
Q Consensus 101 ~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV 145 (309)
..+-.++|+++|.=||-+.-+++.+...+...+|.... ++-+|.
T Consensus 221 ~~kl~f~fg~~D~Wvp~~~~~~l~~~~~~~~~~~~v~~-~~i~Ha 264 (266)
T PF10230_consen 221 GDKLWFYFGQNDHWVPNETRDELIERYPGHEPDVVVDE-EGIPHA 264 (266)
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHcCCCCCeEEEec-CCCCCC
Confidence 45777899999999999999999999987666776666 777774
No 116
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=30.62 E-value=1e+02 Score=27.91 Aligned_cols=41 Identities=20% Similarity=0.147 Sum_probs=34.5
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCC
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNS 141 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~ 141 (309)
|.+ ..|+|+|+.=++ .-+..+++.+.++++|++|....|..
T Consensus 130 Pdr-~ylWlLsRtP~~-s~~~~~~ml~~ak~~Gfdv~~li~~~ 170 (174)
T COG3040 130 PDR-EYLWLLSRTPTL-SQETLKRMLEIAKRRGFDVSKLIFVQ 170 (174)
T ss_pred CCc-ceEEEEecCCCC-CHHHHHHHHHHHHHcCCCcceeEecC
Confidence 444 899999998554 56789999999999999999998864
No 117
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=28.50 E-value=90 Score=30.59 Aligned_cols=49 Identities=22% Similarity=0.367 Sum_probs=42.5
Q ss_pred CCCCCEEEEeeCCCCcc--------ChHHHHHHHHHHHHCCCcEEEEEcCCCCCccc
Q 021705 99 RFGAPYLILCSEDDDLA--------PYQVIYNFAQRLCDLGADVKLVKWNSSPHVGH 147 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LV--------p~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H 147 (309)
..+.|+++++=-+|+|| +-..|-+...+++++|.-+-++...++.||.|
T Consensus 118 ~~~~phVIVfDlD~TLItd~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~ 174 (297)
T PF05152_consen 118 VWEPPHVIVFDLDSTLITDEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVRH 174 (297)
T ss_pred cCCCCcEEEEECCCcccccCCccccCChHHHHHHHHHHHcCCEEEEecCCCHHHHHH
Confidence 46679999999999998 55778888999999999999999999999955
No 118
>PF14688 DUF4461: Domain of unknown function (DUF4461)
Probab=27.00 E-value=3.6e+02 Score=26.39 Aligned_cols=77 Identities=14% Similarity=0.248 Sum_probs=44.0
Q ss_pred CCcEEEEEcCCCCCccccccChHhHHHHHHHHHHHhhhhhHHHHHHHhhhhcCCCCCCCCCCCccccccccccCCCCccc
Q 021705 131 GADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKAGAVYSQRIQRLEREKMGLEGTHDDMADPMYNLSKAAVSPTRSFR 210 (309)
Q Consensus 131 G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (309)
|+.|....|....+ -.+|...+..|.+.... +..+ ..-+.+-+...-++.= .+.|. ..
T Consensus 139 giqI~~~~~~p~~~-------~~~Y~~~L~~~~~~~~~-----------~~~~-~~~~~~~p~sl~~~~l-~v~s~--~~ 196 (313)
T PF14688_consen 139 GIQIGRREFMPKQT-------APEYASFLSKLITSLSD-----------YRGG-RKFHKDWPESLSDFQL-VVESE--SG 196 (313)
T ss_pred CCCEEEEecCCccc-------HHHHHHHHHHHHHHHHH-----------hcCc-ccccccCccccccceE-EEecC--CC
Confidence 88998888763333 37888888888885432 2111 1122222212222222 22222 14
Q ss_pred ccccCCCCceeccCCcccc
Q 021705 211 GTSLVPSDHFVLPSSLEYY 229 (309)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~ 229 (309)
-..+.|..||.+|++..+-
T Consensus 197 ~~~v~~~G~~~iP~~~~~~ 215 (313)
T PF14688_consen 197 PPMVSETGQFIIPSSCPPP 215 (313)
T ss_pred CCcccCCCcEEeeCCCCHH
Confidence 4456999999999998875
No 119
>PF05321 HHA: Haemolysin expression modulating protein; InterPro: IPR007985 This family consists of haemolysin expression modulating protein (Hha) from Escherichia coli and its enterobacterial homologues, such as YmoA from Yersinia enterocolitica, and RmoA encoded on the R100 plasmid. These proteins act as modulators of bacterial gene expression. Members of the Hha/YmoA/RmoA family act in conjunction with members of the H-NS family, participating in the thermoregulation of different virulence factors and in plasmid transfer []. Hha, along with the chromatin-associated protein H-NS, is involved in the regulation of expression of the toxin alpha-haemolysin in response to osmolarity and temperature []. YmoA modulates the expression of various virulence factors, such as Yop proteins and YadA adhesin, in response to temperature. RmoA is a plasmid R100 modulator involved in plasmid transfer []. The HHA family of proteins display striking similarity to the oligomerization domain of the H-NS proteins.; PDB: 1JW2_A 2K5S_A 2JQT_A.
Probab=26.55 E-value=16 Score=27.31 Aligned_cols=8 Identities=63% Similarity=1.086 Sum_probs=1.9
Q ss_pred hccccccCC
Q 021705 264 LFDVCVPKN 272 (309)
Q Consensus 264 ~~~~~~~~~ 272 (309)
||| ||||.
T Consensus 47 lyD-kVP~~ 54 (57)
T PF05321_consen 47 LYD-KVPKS 54 (57)
T ss_dssp --S-S--CH
T ss_pred hhh-hCCHH
Confidence 455 55544
No 120
>PF15585 Imm46: Immunity protein 46
Probab=26.11 E-value=1.7e+02 Score=25.37 Aligned_cols=99 Identities=25% Similarity=0.332 Sum_probs=63.2
Q ss_pred eeCCCC-ccChHHHHHHHHHHHHCCCc--EEEEEcCCCC--CccccccChHhHHHHHHHHHHHhhhhhHHHHHHHhhhhc
Q 021705 108 CSEDDD-LAPYQVIYNFAQRLCDLGAD--VKLVKWNSSP--HVGHYRHYPIDYKAAVTELLGKAGAVYSQRIQRLEREKM 182 (309)
Q Consensus 108 YSkaD~-LVp~~dVE~~a~~ar~~G~d--V~~~~Fe~Sp--HV~H~R~hPeeY~~aV~~FL~k~~~~~~~~~~~l~~~~~ 182 (309)
|+.+|. .-.-+.+++..+...++++. |.+....++. |++.+-.|+.+++..|.+.++++. .+.-.+-
T Consensus 14 ~~~~D~~~~~~~~~~~i~~~i~~~~~~~~~~L~~~NG~~~l~~~g~~NHr~~~~~eii~lf~~i~--------e~aPGSY 85 (129)
T PF15585_consen 14 YSDEDDEAKLEKIIQEIQERISELDWGGLVDLRAMNGSYFLHFGGLSNHRGQEAPEIIELFERIA--------EIAPGSY 85 (129)
T ss_pred cccCcchhhHHHHHHHHHHHHHhcCCCCeEEEEecCCcEEEEEccccCCCccchHHHHHHHHHHH--------HhCCCce
Confidence 455555 44455566666677777666 7777766664 999999999999999998888754 4444445
Q ss_pred CCCCCCCCCCCccccccccccCCCCcc------cccccCCCCceeccC
Q 021705 183 GLEGTHDDMADPMYNLSKAAVSPTRSF------RGTSLVPSDHFVLPS 224 (309)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 224 (309)
|+=-.+|+= + ...+| .| |+--..-.|+|+.|=
T Consensus 86 GlLy~rDDE-d--------~~~~n-eFrV~vl~RG~~te~~D~~LSP~ 123 (129)
T PF15585_consen 86 GLLYIRDDE-D--------PEHFN-EFRVFVLARGELTEQRDPFLSPC 123 (129)
T ss_pred eEEEEecCC-C--------CCCCC-ceEEEEEEccEEeeccCCCcCCc
Confidence 533333331 1 13344 34 345566778888774
No 121
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=26.05 E-value=1.8e+02 Score=31.62 Aligned_cols=48 Identities=13% Similarity=0.225 Sum_probs=41.8
Q ss_pred CCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCcccccc
Q 021705 100 FGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRH 150 (309)
Q Consensus 100 ~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~ 150 (309)
++.|.||+-+.+|.+++....|++.++.+. .++.+.-++..|---.-+
T Consensus 303 mk~PVLFV~Gsnd~mcspn~ME~vreKMqA---~~elhVI~~adhsmaipk 350 (784)
T KOG3253|consen 303 MKQPVLFVIGSNDHMCSPNSMEEVREKMQA---EVELHVIGGADHSMAIPK 350 (784)
T ss_pred cCCceEEEecCCcccCCHHHHHHHHHHhhc---cceEEEecCCCccccCCc
Confidence 678999999999999999999999999998 588888888888755444
No 122
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=24.59 E-value=2e+02 Score=29.01 Aligned_cols=61 Identities=15% Similarity=0.093 Sum_probs=41.8
Q ss_pred CCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 021705 101 GAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGK 165 (309)
Q Consensus 101 ~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~k 165 (309)
.+|.++||+..|=+=.....+..-.. ... .|+...-+++.|- -|-++|+.+.++|.+++++
T Consensus 303 ~~pv~fiyG~~dWmD~~~g~~~~~~~-~~~--~~~~~~v~~aGHh-vylDnp~~Fn~~v~~~~~~ 363 (365)
T KOG4409|consen 303 DVPVTFIYGDRDWMDKNAGLEVTKSL-MKE--YVEIIIVPGAGHH-VYLDNPEFFNQIVLEECDK 363 (365)
T ss_pred CCCEEEEecCcccccchhHHHHHHHh-hcc--cceEEEecCCCce-eecCCHHHHHHHHHHHHhc
Confidence 48999999999977444444333222 222 3666666666663 3567899999999999875
No 123
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=23.71 E-value=21 Score=27.85 Aligned_cols=15 Identities=60% Similarity=0.846 Sum_probs=9.4
Q ss_pred chhhhhccc-cccCCC
Q 021705 259 VLGQILFDV-CVPKNV 273 (309)
Q Consensus 259 ~~~~~~~~~-~~~~~~ 273 (309)
+.|--|||+ ||||.|
T Consensus 51 ~~~~kLyD~gkVP~sV 66 (71)
T PRK10391 51 VSGGRLFDLGQVPKSV 66 (71)
T ss_pred HhCccccccccCCHHH
Confidence 345557774 777765
No 124
>PRK10945 gene expression modulator; Provisional
Probab=23.13 E-value=19 Score=28.16 Aligned_cols=10 Identities=40% Similarity=0.800 Sum_probs=5.0
Q ss_pred hhccccccCCC
Q 021705 263 ILFDVCVPKNV 273 (309)
Q Consensus 263 ~~~~~~~~~~~ 273 (309)
-||| ||||.|
T Consensus 58 KLyD-kVP~~v 67 (72)
T PRK10945 58 KLYD-KIPSSV 67 (72)
T ss_pred hhHh-hcCHHH
Confidence 3555 555544
No 125
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases. This domain is also related to alkaline phosphatase IPR001952 from INTERPRO []. The most conserved residues are probably involved in metal binding and catalysis.; GO: 0003824 catalytic activity, 0046872 metal ion binding; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3UN5_F 3UN3_B 3M8Y_C 3UO0_B 3UN2_B 3UNY_E ....
Probab=22.96 E-value=74 Score=29.53 Aligned_cols=44 Identities=18% Similarity=0.139 Sum_probs=36.0
Q ss_pred HHHHHHHHHHCCCcEEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 021705 120 IYNFAQRLCDLGADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLG 164 (309)
Q Consensus 120 VE~~a~~ar~~G~dV~~~~Fe~SpHV~H~R~hPeeY~~aV~~FL~ 164 (309)
+++.++.+++..++.-..-+.+...+||- .++++|.++|..+=+
T Consensus 129 ~~~~~~~l~~~~~~~v~~~~~~~D~~GH~-~~~~~~~~~ie~~D~ 172 (252)
T PF01676_consen 129 AEAAIEALKKDKYDFVFVHVKGTDEAGHR-GDPEAYIEAIERIDR 172 (252)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEHHHHHHTT-T-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccCCeEEEeecCcchhhcc-CCHHHHHHHHHHHHH
Confidence 67888888888889888888889999995 689999998876555
No 126
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=22.24 E-value=1.7e+02 Score=28.26 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=46.7
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCcEEEEEcC-CCCCccccccChHhHHHHHHHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWN-SSPHVGHYRHYPIDYKAAVTELLG 164 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~a~~ar~~G~dV~~~~Fe-~SpHV~H~R~hPeeY~~aV~~FL~ 164 (309)
.++.|.+++-..+|+-+|+..++.|+.--++. .+++.... .-.-++|+.-..+.......+++.
T Consensus 214 aVrtPi~~~~~~DD~w~P~As~d~f~~~y~nA--pl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~ 278 (281)
T COG4757 214 AVRTPITFSRALDDPWAPPASRDAFASFYRNA--PLEMRDLPRAEGPLGHMGYFREPFEALWKEMLG 278 (281)
T ss_pred HhcCceeeeccCCCCcCCHHHHHHHHHhhhcC--cccceecCcccCcccchhhhccchHHHHHHHHH
Confidence 37789999999999999999999999888764 34433321 112488888887777555555554
No 127
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=21.47 E-value=33 Score=28.68 Aligned_cols=12 Identities=25% Similarity=0.952 Sum_probs=8.5
Q ss_pred hhccccccCCCc
Q 021705 263 ILFDVCVPKNVE 274 (309)
Q Consensus 263 ~~~~~~~~~~~~ 274 (309)
++||++||.||+
T Consensus 104 ~v~Dla~Pr~i~ 115 (135)
T PF01488_consen 104 LVIDLAVPRDID 115 (135)
T ss_dssp EEEES-SS-SB-
T ss_pred ceeccccCCCCC
Confidence 789999999997
No 128
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=20.39 E-value=1.4e+02 Score=31.82 Aligned_cols=60 Identities=17% Similarity=0.333 Sum_probs=40.3
Q ss_pred CCCCCEEEEeeCCCCccChHHHHHH-------HHHHHHCCCcEEEEEcCCCCCcccccc---ChHhHHHH
Q 021705 99 RFGAPYLILCSEDDDLAPYQVIYNF-------AQRLCDLGADVKLVKWNSSPHVGHYRH---YPIDYKAA 158 (309)
Q Consensus 99 ~~~~PrLyLYSkaD~LVp~~dVE~~-------a~~ar~~G~dV~~~~Fe~SpHV~H~R~---hPeeY~~a 158 (309)
..++|..+|+|..|.+.|++++-.. .++.+..|-.+-...=++-.|-|.+.. -.+|+.+.
T Consensus 295 ~Ir~Piivfas~gDnITPP~QaL~WI~dlY~~~~ei~a~gQ~IVY~~h~~vGHLGIFVS~~VarkEH~~i 364 (581)
T PF11339_consen 295 NIRSPIIVFASYGDNITPPQQALNWIPDLYPDTEEIKAAGQTIVYLLHESVGHLGIFVSGKVARKEHREI 364 (581)
T ss_pred hCCCCEEEEeccCCCCCChhHhccchHhhcCCHHHHHhCCCEEEEEecCCCCceEEEeccHhhHHHHHHH
Confidence 4779999999999999999988433 345566676665555455556555544 24555433
Done!