BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021706
         (309 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1T0P|A Chain A, Structural Basis Of Icam Recognition By Integrin
           Alpahlbeta2 Revealed In The Complex Structure Of Binding
           Domains Of Icam-3 And Alphalbeta2 At 1.65 A
          Length = 175

 Score = 31.2 bits (69), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 189 SPHVKWG------LWVVHRLVLTAVYGIILFMYHSKWRERLPARPAFYKYISIM 236
           S +VKW         V H L+LT  +G I ++    +RE L ARP   K + I+
Sbjct: 58  SDYVKWKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIII 111


>pdb|3HI6|A Chain A, Crystal Structure Of Intermediate Affinity I Domain Of
           Integrin Lfa-1 With The Fab Fragment Of Its Antibody
           Al-57
 pdb|3HI6|B Chain B, Crystal Structure Of Intermediate Affinity I Domain Of
           Integrin Lfa-1 With The Fab Fragment Of Its Antibody
           Al-57
          Length = 180

 Score = 31.2 bits (69), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 189 SPHVKWG------LWVVHRLVLTAVYGIILFMYHSKWRERLPARPAFYKYISIM 236
           S +VKW         V H L+LT  +G I ++    +RE L ARP   K + I+
Sbjct: 57  SDYVKWKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIII 110


>pdb|1XDD|A Chain A, X-ray Structure Of Lfa-1 I-domain In Complex With Lfa703
           At 2.2a Resolution
 pdb|1XDD|B Chain B, X-ray Structure Of Lfa-1 I-domain In Complex With Lfa703
           At 2.2a Resolution
 pdb|1XDG|A Chain A, X-ray Structure Of Lfa-1 I-domain In Complex With Lfa878
           At 2.1a Resolution
 pdb|1XDG|B Chain B, X-ray Structure Of Lfa-1 I-domain In Complex With Lfa878
           At 2.1a Resolution
 pdb|1XUO|A Chain A, X-ray Structure Of Lfa-1 I-domain Bound To A
           1,4-diazepane- 2,5-dione Inhibitor At 1.8a Resolution
 pdb|1XUO|B Chain B, X-ray Structure Of Lfa-1 I-domain Bound To A
           1,4-diazepane- 2,5-dione Inhibitor At 1.8a Resolution
 pdb|1DGQ|A Chain A, Nmr Solution Structure Of The Inserted Domain Of Human
           Leukocyte Function Associated Antigen-1
          Length = 188

 Score = 30.8 bits (68), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 189 SPHVKWG------LWVVHRLVLTAVYGIILFMYHSKWRERLPARPAFYKYISIM 236
           S +VKW         V H L+LT  +G I ++    +RE L ARP   K + I+
Sbjct: 61  SDYVKWKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIII 114


>pdb|1CQP|A Chain A, Crystal Structure Analysis Of The Complex Lfa-1 (Cd11a) I-
           Domain  LOVASTATIN AT 2.6 A RESOLUTION
 pdb|1CQP|B Chain B, Crystal Structure Analysis Of The Complex Lfa-1 (Cd11a) I-
           Domain  LOVASTATIN AT 2.6 A RESOLUTION
 pdb|3BQM|B Chain B, Lfa-1 I Domain Bound To Inhibitors
 pdb|3BQM|C Chain C, Lfa-1 I Domain Bound To Inhibitors
 pdb|3BQN|B Chain B, Lfa-1 I Domain Bound To Inhibitors
 pdb|3BQN|C Chain C, Lfa-1 I Domain Bound To Inhibitors
          Length = 182

 Score = 30.8 bits (68), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 189 SPHVKWG------LWVVHRLVLTAVYGIILFMYHSKWRERLPARPAFYKYISIM 236
           S +VKW         V H L+LT  +G I ++    +RE L ARP   K + I+
Sbjct: 57  SDYVKWKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIII 110


>pdb|3E2M|A Chain A, Lfa-1 I Domain Bound To Inhibitors
 pdb|3E2M|B Chain B, Lfa-1 I Domain Bound To Inhibitors
          Length = 185

 Score = 30.8 bits (68), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 189 SPHVKWG------LWVVHRLVLTAVYGIILFMYHSKWRERLPARPAFYKYISIM 236
           S +VKW         V H L+LT  +G I ++    +RE L ARP   K + I+
Sbjct: 60  SDYVKWKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIII 113


>pdb|3F74|A Chain A, Crystal Structure Of Wild Type Lfa1 I Domain
 pdb|3F74|B Chain B, Crystal Structure Of Wild Type Lfa1 I Domain
 pdb|3F74|C Chain C, Crystal Structure Of Wild Type Lfa1 I Domain
 pdb|3F78|A Chain A, Crystal Structure Of Wild Type Lfa1 I Domain Complexed
           With Isoflurane
 pdb|3F78|B Chain B, Crystal Structure Of Wild Type Lfa1 I Domain Complexed
           With Isoflurane
 pdb|3F78|C Chain C, Crystal Structure Of Wild Type Lfa1 I Domain Complexed
           With Isoflurane
          Length = 181

 Score = 30.8 bits (68), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 189 SPHVKWG------LWVVHRLVLTAVYGIILFMYHSKWRERLPARPAFYKYISIM 236
           S +VKW         V H L+LT  +G I ++    +RE L ARP   K + I+
Sbjct: 58  SDYVKWKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIII 111


>pdb|3BN3|A Chain A, Crystal Structure Of Icam-5 In Complex With Al I Domain
          Length = 180

 Score = 30.8 bits (68), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 189 SPHVKWG------LWVVHRLVLTAVYGIILFMYHSKWRERLPARPAFYKYISIM 236
           S +VKW         V H L+LT  +G I ++    +RE L ARP   K + I+
Sbjct: 57  SDYVKWKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIII 110


>pdb|3TCX|B Chain B, Structure Of Engineered Single Domain Icam-1 D1 With
           High-Affinity Al Integrin I Domain Of Native C-Terminal
           Helix Conformation
 pdb|3TCX|D Chain D, Structure Of Engineered Single Domain Icam-1 D1 With
           High-Affinity Al Integrin I Domain Of Native C-Terminal
           Helix Conformation
 pdb|3TCX|F Chain F, Structure Of Engineered Single Domain Icam-1 D1 With
           High-Affinity Al Integrin I Domain Of Native C-Terminal
           Helix Conformation
 pdb|3TCX|H Chain H, Structure Of Engineered Single Domain Icam-1 D1 With
           High-Affinity Al Integrin I Domain Of Native C-Terminal
           Helix Conformation
 pdb|3TCX|J Chain J, Structure Of Engineered Single Domain Icam-1 D1 With
           High-Affinity Al Integrin I Domain Of Native C-Terminal
           Helix Conformation
 pdb|3TCX|L Chain L, Structure Of Engineered Single Domain Icam-1 D1 With
           High-Affinity Al Integrin I Domain Of Native C-Terminal
           Helix Conformation
 pdb|3TCX|N Chain N, Structure Of Engineered Single Domain Icam-1 D1 With
           High-Affinity Al Integrin I Domain Of Native C-Terminal
           Helix Conformation
 pdb|3TCX|P Chain P, Structure Of Engineered Single Domain Icam-1 D1 With
           High-Affinity Al Integrin I Domain Of Native C-Terminal
           Helix Conformation
 pdb|3TCX|R Chain R, Structure Of Engineered Single Domain Icam-1 D1 With
           High-Affinity Al Integrin I Domain Of Native C-Terminal
           Helix Conformation
 pdb|3TCX|T Chain T, Structure Of Engineered Single Domain Icam-1 D1 With
           High-Affinity Al Integrin I Domain Of Native C-Terminal
           Helix Conformation
 pdb|3TCX|V Chain V, Structure Of Engineered Single Domain Icam-1 D1 With
           High-Affinity Al Integrin I Domain Of Native C-Terminal
           Helix Conformation
 pdb|3TCX|X Chain X, Structure Of Engineered Single Domain Icam-1 D1 With
           High-Affinity Al Integrin I Domain Of Native C-Terminal
           Helix Conformation
 pdb|3TCX|Z Chain Z, Structure Of Engineered Single Domain Icam-1 D1 With
           High-Affinity Al Integrin I Domain Of Native C-Terminal
           Helix Conformation
 pdb|3TCX|BB Chain b, Structure Of Engineered Single Domain Icam-1 D1 With
           High-Affinity Al Integrin I Domain Of Native C-Terminal
           Helix Conformation
          Length = 180

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 189 SPHVKWG------LWVVHRLVLTAVYGIILFMYHSKWRERLPARPAFYKYISIM 236
           S +VKW         V H L+LT  +G I ++    +RE L ARP   K + I+
Sbjct: 57  SDYVKWKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIII 110


>pdb|1MQ9|A Chain A, Crystal Structure Of High Affinity Alphal I Domain With
           Ligand Mimetic Crystal Contact
 pdb|1MQA|A Chain A, Crystal Structure Of High Affinity Alphal I Domain In The
           Absence Of Ligand Or Metal
          Length = 180

 Score = 29.6 bits (65), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 198 VVHRLVLTAVYGIILFMYHSKWRERLPARPAFYKYISIM 236
           V H L+LT  +G I ++    +RE L ARP   K + I+
Sbjct: 73  VKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIII 111


>pdb|1MJN|A Chain A, Crystal Structure Of The Intermediate Affinity Al I Domain
           M
          Length = 179

 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 198 VVHRLVLTAVYGIILFMYHSKWRERLPARPAFYKYISIM 236
           V H L+LT  +G I ++    +RE L ARP   K + I+
Sbjct: 72  VKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIII 110


>pdb|1RD4|A Chain A, An Allosteric Inhibitor Of Lfa-1 Bound To Its I-Domain
 pdb|1RD4|B Chain B, An Allosteric Inhibitor Of Lfa-1 Bound To Its I-Domain
 pdb|1RD4|C Chain C, An Allosteric Inhibitor Of Lfa-1 Bound To Its I-Domain
 pdb|1RD4|D Chain D, An Allosteric Inhibitor Of Lfa-1 Bound To Its I-Domain
          Length = 191

 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 198 VVHRLVLTAVYGIILFMYHSKWRERLPARPAFYKYISIM 236
           V H L+LT  +G I ++    +RE L ARP   K + I+
Sbjct: 79  VKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIII 117


>pdb|1MQ8|B Chain B, Crystal Structure Of Alphal I Domain In Complex With
           Icam-1
 pdb|1MQ8|D Chain D, Crystal Structure Of Alphal I Domain In Complex With
           Icam-1
          Length = 177

 Score = 29.6 bits (65), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 198 VVHRLVLTAVYGIILFMYHSKWRERLPARPAFYKYISIM 236
           V H L+LT  +G I ++    +RE L ARP   K + I+
Sbjct: 70  VKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIII 108


>pdb|1LFA|A Chain A, Cd11a I-Domain With Bound Mn++
 pdb|1LFA|B Chain B, Cd11a I-Domain With Bound Mn++
 pdb|1ZOO|A Chain A, Cd11a I-Domain With Bound Magnesium Ion
 pdb|1ZOO|B Chain B, Cd11a I-Domain With Bound Magnesium Ion
 pdb|1ZOP|A Chain A, Cd11a I-Domain With Bound Magnesium Ion
 pdb|1ZOP|B Chain B, Cd11a I-Domain With Bound Magnesium Ion
 pdb|1ZON|A Chain A, Cd11a I-Domain Without Bound Cation
          Length = 187

 Score = 29.3 bits (64), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 198 VVHRLVLTAVYGIILFMYHSKWRERLPARPAFYKYISIM 236
           V H L+LT  +G I ++    +RE L ARP   K + I+
Sbjct: 75  VKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIII 113


>pdb|3EOA|I Chain I, Crystal Structure The Fab Fragment Of Efalizumab In
           Complex With Lfa-1 I Domain, Form I
 pdb|3EOA|J Chain J, Crystal Structure The Fab Fragment Of Efalizumab In
           Complex With Lfa-1 I Domain, Form I
 pdb|3EOB|I Chain I, Crystal Structure The Fab Fragment Of Efalizumab In
           Complex With Lfa-1 I Domain, Form Ii
 pdb|3EOB|J Chain J, Crystal Structure The Fab Fragment Of Efalizumab In
           Complex With Lfa-1 I Domain, Form Ii
          Length = 181

 Score = 29.3 bits (64), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 198 VVHRLVLTAVYGIILFMYHSKWRERLPARPAFYKYISIM 236
           V H L+LT  +G I ++    +RE L ARP   K + I+
Sbjct: 72  VKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIII 110


>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase
 pdb|1HR6|D Chain D, Yeast Mitochondrial Processing Peptidase
 pdb|1HR6|F Chain F, Yeast Mitochondrial Processing Peptidase
 pdb|1HR6|H Chain H, Yeast Mitochondrial Processing Peptidase
          Length = 443

 Score = 29.3 bits (64), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 2   RVLDQIAQSPFPL-IALSQNPNYSSSSIVKGGSFFGSGLYKWLVECHGFLHNVVLIVSSV 60
           R +     SP PL +A SQN + ++S +    S+  SGL+   +      HNV LIV+ +
Sbjct: 278 RAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEI 337


>pdb|2ICA|A Chain A, Cd11a (Lfa1) I-Domain Complexed With Bms-587101 Aka
           5-[(5s,
           9r)-9-(4-Cyanophenyl)-3-(3,5-Dichlorophenyl)-1-Methyl-2,
           4- Dioxo-1,3,7-Triazaspiro [4.4]non-7-Yl]methyl]-3-
           Thiophenecarboxylicacid
 pdb|2O7N|A Chain A, Cd11a (Lfa1) I-Domain Complexed With 7a-[(4-Cyanophenyl)
           Methyl]-6-(3,5-Dichlorophenyl)-5-Oxo-2,3,5,
           7a-Tetrahydro- 1h-Pyrrolo[1,2-A]pyrrole-7-Carbonitrile
 pdb|3M6F|A Chain A, Cd11a I-Domain Complexed With
           6-((5s,9r)-9-(4-Cyanophenyl)-3
           Dichlorophenyl)-1-Methyl-2,4-Dioxo-1,3,7-
           Triazaspiro[4.4]n Nicotinic Acid
          Length = 183

 Score = 29.3 bits (64), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 198 VVHRLVLTAVYGIILFMYHSKWRERLPARPAFYKYISIM 236
           V H L+LT  +G I ++    +RE L ARP   K + I+
Sbjct: 75  VKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIII 113


>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
 pdb|1HR7|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
 pdb|1HR7|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
 pdb|1HR7|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
 pdb|1HR8|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
           Complexed With Cytochrome C Oxidase Iv Signal Peptide
 pdb|1HR8|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
           Complexed With Cytochrome C Oxidase Iv Signal Peptide
 pdb|1HR8|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
           Complexed With Cytochrome C Oxidase Iv Signal Peptide
 pdb|1HR8|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
           Complexed With Cytochrome C Oxidase Iv Signal Peptide
 pdb|1HR9|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
           Complexed With Malate Dehydrogenase Signal Peptide
 pdb|1HR9|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
           Complexed With Malate Dehydrogenase Signal Peptide
 pdb|1HR9|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
           Complexed With Malate Dehydrogenase Signal Peptide
 pdb|1HR9|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
           Complexed With Malate Dehydrogenase Signal Peptide
          Length = 443

 Score = 29.3 bits (64), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 2   RVLDQIAQSPFPL-IALSQNPNYSSSSIVKGGSFFGSGLYKWLVECHGFLHNVVLIVSSV 60
           R +     SP PL +A SQN + ++S +    S+  SGL+   +      HNV LIV+ +
Sbjct: 278 RAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEI 337


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.143    0.467 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,378,924
Number of Sequences: 62578
Number of extensions: 375553
Number of successful extensions: 817
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 801
Number of HSP's gapped (non-prelim): 21
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)