Query 021706
Match_columns 309
No_of_seqs 51 out of 53
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 05:03:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021706.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021706hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10160 Tmemb_40: Predicted m 100.0 1E-104 2E-109 736.1 26.4 256 40-296 1-261 (261)
2 KOG4536 Predicted membrane pro 100.0 3.8E-92 8.2E-97 660.1 26.2 294 1-309 4-315 (347)
3 KOG4536 Predicted membrane pro 85.7 3.5 7.5E-05 40.8 7.8 80 59-138 57-138 (347)
4 PF10192 GpcrRhopsn4: Rhodopsi 75.5 69 0.0015 29.7 15.5 158 76-242 54-221 (257)
5 cd00927 Cyt_c_Oxidase_VIc Cyto 58.7 4.3 9.4E-05 32.2 0.7 25 279-306 45-69 (70)
6 PF03189 Otopetrin: Otopetrin; 57.8 2.1E+02 0.0045 29.3 12.6 191 40-241 229-431 (441)
7 PF09586 YfhO: Bacterial membr 49.7 2.5E+02 0.0055 29.9 12.2 121 47-170 142-264 (843)
8 COG3083 Predicted hydrolase of 49.0 3.8E+02 0.0083 29.0 13.9 144 96-249 23-186 (600)
9 TIGR00939 2a57 Equilibrative N 48.4 2.4E+02 0.0052 28.5 11.3 31 189-219 170-200 (437)
10 PF02937 COX6C: Cytochrome c o 45.6 7 0.00015 31.0 0.0 25 279-306 47-71 (73)
11 PRK13825 conjugal transfer pro 37.0 69 0.0015 32.1 5.5 71 158-240 48-118 (388)
12 PF12273 RCR: Chitin synthesis 34.9 30 0.00066 29.0 2.2 13 73-85 23-35 (130)
13 KOG4193 G protein-coupled rece 34.1 68 0.0015 34.4 5.1 68 41-108 462-536 (610)
14 KOG0461 Selenocysteine-specifi 34.0 19 0.00041 37.2 1.0 32 140-171 11-42 (522)
15 PF08285 DPM3: Dolichol-phosph 32.6 87 0.0019 25.7 4.5 50 197-249 7-60 (91)
16 KOG3966 p53-mediated apoptosis 28.0 2.7E+02 0.0059 28.0 7.7 73 82-168 138-228 (360)
17 PF13041 PPR_2: PPR repeat fam 27.9 32 0.00068 23.5 1.0 31 274-304 5-35 (50)
18 TIGR00756 PPR pentatricopeptid 27.8 29 0.00064 20.7 0.8 31 274-304 2-32 (35)
19 COG1914 MntH Mn2+ and Fe2+ tra 27.6 6.3E+02 0.014 25.9 10.5 127 88-229 47-190 (416)
20 PF12725 DUF3810: Protein of u 26.9 1.3E+02 0.0027 29.4 5.3 54 50-105 25-78 (318)
21 PF01535 PPR: PPR repeat; Int 24.2 38 0.00082 20.1 0.8 30 274-303 2-31 (31)
22 PF04235 DUF418: Protein of un 23.3 4.3E+02 0.0093 22.4 7.3 104 144-255 9-115 (163)
23 COG2142 SdhD Succinate dehydro 21.6 5.2E+02 0.011 22.2 8.3 91 35-130 10-103 (117)
24 PF09529 Intg_mem_TP0381: Inte 21.5 2.8E+02 0.0062 24.9 6.1 92 120-217 126-222 (225)
25 KOG2568 Predicted membrane pro 20.2 5E+02 0.011 27.8 8.3 86 56-141 348-440 (518)
No 1
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=100.00 E-value=1.1e-104 Score=736.05 Aligned_cols=256 Identities=46% Similarity=0.843 Sum_probs=251.2
Q ss_pred chhhhcccchhhhHHHHHHHHHHHHHHHhhchhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhhhhcccchh-hHHH
Q 021706 40 YKWLVECHGFLHNVVLIVSSVCFVLYLSFQAKKSFSKLSNGRSHIMIAYYGCLWLVSLLSLAWCCLQAWECTRGK-EVAW 118 (309)
Q Consensus 40 ~~w~~~c~~~~~dv~llvPn~lFllFL~~~~~~s~~KL~~t~SpI~~tyY~llw~v~llnl~rc~lsm~~~~~~~-~~~w 118 (309)
++|+.+|||++||+++++||++|++||++|+||+++|||+||||||+|||+++|+++++|++||++|||||+|++ +++|
T Consensus 1 y~~~~~~~v~~~d~~l~vPn~lFllfL~~~~~~s~~KL~~~~SpI~~tyY~llw~v~llnl~rc~vsm~~~~~~~~~~~d 80 (261)
T PF10160_consen 1 YRWIGGSRVRIWDVVLLVPNLLFLLFLAWRLRKSRRKLRHTRSPIFITYYALLWVVALLNLARCFVSMWVCSPGKGGIAD 80 (261)
T ss_pred CcccccCceEehHHHHHHHHHHHHHHHHHhchHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHH
Confidence 579999999999999999999999999999999999999999999999999999999999999999999998875 7899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-cccCChhHHHHHHHHHHHHHHhHHHHHHHHHhhccc-cceeecCCCCCCCccchh
Q 021706 119 NILSLFTKSGMLFLEVSLLAFLFQ-GNYASGPEALARTFGISGLVVGLDIILKAVYLFGFG-IPLFIDSNGQSPHVKWGL 196 (309)
Q Consensus 119 niLwl~trf~lL~lEvSvvvFgL~-Ghl~Sg~~si~rtl~iT~lis~~d~~lkaiy~f~~G-vplf~~~~~~~~hgg~~f 196 (309)
|++|+++||+||++|+||++||+| ||+|| |||||||+++|++||++|+++|++|||++| +|+++++++.++||||+|
T Consensus 81 ~~lW~ilrfflL~lEvSvvvFgL~fghlds-~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d~~l~~~~~~~~~hgg~~f 159 (261)
T PF10160_consen 81 KVLWNILRFFLLSLEVSVVVFGLQFGHLDS-RSSIKRTLLITGLISLADSLTQAILEFGFGDVPLFIENFDLFGHGGWGF 159 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHHHHHHHHHHHHheeecCcccccCCCCCcCCcCCeeh
Confidence 999999999999999999999998 88887 999999999999999999999999999999 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhccCCCChhHHHHHHHHHHHHHHHHHHHHH--hcCCceeEEecchhhHHHHhhhHHH
Q 021706 197 WVVHRLVLTAVYGIILFMYHSKWRERLPARPAFYKYISIMFILNALALFACVL--NGASFGYWLYGVTNVCYHAFYLPLI 274 (309)
Q Consensus 197 W~~ss~~f~lVY~~I~~Lp~t~~r~rLPar~SFY~Yv~iL~lLN~iq~~Gs~L--~~~~~GlClvdvTt~~Yfaly~PLl 274 (309)
|++||++|++||++|++||++|||+|||||||||+||++|++||++|++||+| +|+++|+|+||+|+++|||+|+|++
T Consensus 160 W~~~s~~f~~vY~~I~~L~~~r~r~~LPar~SFY~Y~~~L~~LN~~q~~Gs~Ll~~~~~~Glc~~d~t~~~Yfa~y~Pll 239 (261)
T PF10160_consen 160 WFISSLVFALVYGFILILTPLRWRDRLPARPSFYRYVGILFLLNLLQSIGSGLLGYGASFGLCLVDLTTFLYFALYPPLL 239 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 7999999999999999999999999
Q ss_pred HHHHHHhhhcccccccccchhh
Q 021706 275 YVTFLADFFQEEDLRLENVYYS 296 (309)
Q Consensus 275 Y~TFLadFF~ee~~~l~~~yYS 296 (309)
|+|||||||||||.|+||.|||
T Consensus 240 Y~TFL~~fF~~~d~~L~~~Yys 261 (261)
T PF10160_consen 240 YVTFLADFFQEEDVHLENVYYS 261 (261)
T ss_pred HHHHHHHHhCccccCCCCCCCC
Confidence 9999999999999999999997
No 2
>KOG4536 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=3.8e-92 Score=660.06 Aligned_cols=294 Identities=53% Similarity=0.881 Sum_probs=269.2
Q ss_pred ChhhhhhhcCCcccccccCCCCCCCCccccCCcccccccchhhhcccc-h---hhhHHHHHHHHHHHHHHHhhchhhhhh
Q 021706 1 MRVLDQIAQSPFPLIALSQNPNYSSSSIVKGGSFFGSGLYKWLVECHG-F---LHNVVLIVSSVCFVLYLSFQAKKSFSK 76 (309)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~c~~-~---~~dv~llvPn~lFllFL~~~~~~s~~K 76 (309)
||+..+++++|...++. +||+|. +| +...|+.+||| + +||+++++||++|++||++|++++++|
T Consensus 4 ~e~~~~i~~Sp~li~~L--~Pn~s~---------~~-~~~~~vyk~~G~frvrywd~vllipnilFl~fL~~k~~s~~~K 71 (347)
T KOG4536|consen 4 MEVLTEIAESPFLISPL--APNSSA---------PG-RCLLWVYKCHGTFRVRYWDTVLLIPNILFLAFLAYKAKSSLSK 71 (347)
T ss_pred HHHHHHhccCCCcCCCC--CCCCcC---------CC-cceEEEEecCCcceehhhhHHHHHHHHHHHHHHHHhchhHHHH
Confidence 68899999999998887 888644 33 26779999999 6 999999999999999999999999999
Q ss_pred hccCCchHHHHHHHHHHHHHHHHHHHHHhhh-hcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hcccCChhHH
Q 021706 77 LSNGRSHIMIAYYGCLWLVSLLSLAWCCLQA-WECTRGKEVAWNILSLFTKSGMLFLEVSLLAFLF----QGNYASGPEA 151 (309)
Q Consensus 77 L~~t~SpI~~tyY~llw~v~llnl~rc~lsm-~~~~~~~~~~wniLwl~trf~lL~lEvSvvvFgL----~Ghl~Sg~~s 151 (309)
||++|||||+|||+++|+|+++|++||++|| |+|+|++|++||++|.++|||.++.|+++.++|+ |||..|++++
T Consensus 72 lr~~~SpI~iafy~lv~vvsLvniarc~~smt~s~t~g~e~~dkvlW~i~~fF~ls~el~~~v~glaFg~~~n~~Si~~a 151 (347)
T KOG4536|consen 72 LRNRRSPIMIAFYGLVWVVSLVNIARCCLSMTWSCTPGKEVADKVLWNILTFFTLSGELFLEVSGLAFGFQGNYASIAEA 151 (347)
T ss_pred hhcCCChhHHHHHHHHHHHHHHHHHHHHHhceeeccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 9999999999999999999999999999999 5689999999999999999998888877777666 4677777788
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhccccceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcc--cchhccCCCChhH
Q 021706 152 LARTFGISGLVVGLDIILKAVYLFGFGIPLFIDSNGQSPHVKWGLWVVHRLVLTAVYGIILFMYH--SKWRERLPARPAF 229 (309)
Q Consensus 152 i~rtl~iT~lis~~d~~lkaiy~f~~Gvplf~~~~~~~~hgg~~fW~~ss~~f~lVY~~I~~Lp~--t~~r~rLPar~SF 229 (309)
++||+++|+..+..|.++|++|.+++|+|++.|.+ .|||..||+.+|..+++||..++++|. +|||+|||+||||
T Consensus 152 L~~T~liS~~~~a~q~~le~~y~d~~~~pl~fdi~---~~gg~~fWl~ss~~l~Lvy~~~milp~~~~k~r~kLPsr~sF 228 (347)
T KOG4536|consen 152 LTRTFLISGAYSALQLLLEAIYLDGFGVPLFFDIN---EHGGRFFWLWSSHKLLLVYSYGMILPMYNSKWREKLPSRPSF 228 (347)
T ss_pred HHHHHHHhhHHHHHHHHHHheeeccccCceeeeec---ccCcEEEehHHHHHHHHHHHHHheeeccchhhhhcCCCcchH
Confidence 88888888888888889999999999999977654 389999999999999999999999887 5666669999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hcCCceeEEecchhhHHHHhhhHHHHHHHHHhhhcccccccccch-hhhhhh-cc---
Q 021706 230 YKYISIMFILNALALFACVL--NGASFGYWLYGVTNVCYHAFYLPLIYVTFLADFFQEEDLRLENVY-YSEMKD-AG--- 302 (309)
Q Consensus 230 Y~Yv~iL~lLN~iq~~Gs~L--~~~~~GlClvdvTt~~Yfaly~PLlY~TFLadFF~ee~~~l~~~y-YSemkD-ag--- 302 (309)
|+|+++|++||.+|++||+| +|+.+|+|+||+||+|||++|+|+||+||||||||||+.++||+| |+|||| ||
T Consensus 229 y~Y~~im~~Ln~Lq~~gsal~~f~~~~Glc~vgitt~~Yf~fy~PliYvtFLr~ff~~ep~nl~~~~~yre~kd~aGa~~ 308 (347)
T KOG4536|consen 229 YVYIGIMAALNLLQLLGSALTAFDAHFGLCLVGITTVCYFAFYLPLIYVTFLRDFFQEEPLNLENVYCYREMKDAAGAAG 308 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccceEEechhHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHhhhhhccCCC
Confidence 99999999999999999999 699999999999999999999999999999999999999999999 999999 77
Q ss_pred CCCCCCC
Q 021706 303 FFDADWE 309 (309)
Q Consensus 303 ~fd~dw~ 309 (309)
+||+|||
T Consensus 309 ~~da~y~ 315 (347)
T KOG4536|consen 309 FFDADYE 315 (347)
T ss_pred CccccCc
Confidence 9999997
No 3
>KOG4536 consensus Predicted membrane protein [Function unknown]
Probab=85.69 E-value=3.5 Score=40.79 Aligned_cols=80 Identities=26% Similarity=0.297 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhchhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHH-hhhhcc-cchhhHHHHHHHHHHHHHHHHHHHHH
Q 021706 59 SVCFVLYLSFQAKKSFSKLSNGRSHIMIAYYGCLWLVSLLSLAWCC-LQAWEC-TRGKEVAWNILSLFTKSGMLFLEVSL 136 (309)
Q Consensus 59 n~lFllFL~~~~~~s~~KL~~t~SpI~~tyY~llw~v~llnl~rc~-lsm~~~-~~~~~~~wniLwl~trf~lL~lEvSv 136 (309)
-++|+++=+-+.++-+|-=|.-==--+--.--++-++.+.--+=.. +||+-+ ....++.||++-+|+..+++++|+|.
T Consensus 57 Fl~fL~~k~~s~~~Klr~~~SpI~iafy~lv~vvsLvniarc~~smt~s~t~g~e~~dkvlW~i~~fF~ls~el~~~v~g 136 (347)
T KOG4536|consen 57 FLAFLAYKAKSSLSKLRNRRSPIMIAFYGLVWVVSLVNIARCCLSMTWSCTPGKEVADKVLWNILTFFTLSGELFLEVSG 136 (347)
T ss_pred HHHHHHHhchhHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhceeeccCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777655444433322222111122222233333333333333 788886 56899999999999999999999997
Q ss_pred HH
Q 021706 137 LA 138 (309)
Q Consensus 137 vv 138 (309)
++
T Consensus 137 la 138 (347)
T KOG4536|consen 137 LA 138 (347)
T ss_pred HH
Confidence 64
No 4
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=75.47 E-value=69 Score=29.70 Aligned_cols=158 Identities=16% Similarity=0.155 Sum_probs=72.9
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHHHHhhhhc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh---hcccCChhHH
Q 021706 76 KLSNGRSHIMIAYYGCLWLVSLLSLAWCCLQAWE-CTRGKEVAWNILSLFTKSGMLFLEVSLLAFLF---QGNYASGPEA 151 (309)
Q Consensus 76 KL~~t~SpI~~tyY~llw~v~llnl~rc~lsm~~-~~~~~~~~wniLwl~trf~lL~lEvSvvvFgL---~Ghl~Sg~~s 151 (309)
|-++..++++..+.+.+.+- .+++.-....... +..+.+ ...+..+-+.+-...|...+.-++ +|--.+ +..
T Consensus 54 ~~~~~~h~~~~l~~~~l~l~-~~s~~l~~ih~~~ya~nG~G--~~~l~~~g~i~~~~s~~~~~lLLllla~GwTi~-~~~ 129 (257)
T PF10192_consen 54 KKRGLMHPVYKLFSAALLLQ-FLSLLLNLIHYIVYAYNGVG--IPFLKVLGQIFDILSQILFLLLLLLLAKGWTIT-RSR 129 (257)
T ss_pred HhcCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHcccccc-cCc
Confidence 33556667765555444433 3344444444443 322222 234445555555555555444333 364333 322
Q ss_pred HH--HHHHHHHHHHhHHHHHHHHHhhccccceeecC-CCCCC---CccchhHHHHHHHHHHHHHHHHHhcccchhccCCC
Q 021706 152 LA--RTFGISGLVVGLDIILKAVYLFGFGIPLFIDS-NGQSP---HVKWGLWVVHRLVLTAVYGIILFMYHSKWRERLPA 225 (309)
Q Consensus 152 i~--rtl~iT~lis~~d~~lkaiy~f~~Gvplf~~~-~~~~~---hgg~~fW~~ss~~f~lVY~~I~~Lp~t~~r~rLPa 225 (309)
++ ... .+..++.....+|.++..-+.--. .|+ +.... ..|+.+=.+. ..+.-.++.....|.-+||=|.
T Consensus 130 ~s~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~-~d~~~~~~~y~s~pGy~li~lr---i~~~~~F~~~~~~t~~~~~~~~ 204 (257)
T PF10192_consen 130 LSQSNSV-KLIVFIILYVVLQVILFIWENRFY-FDPHSYLYFYDSWPGYILIALR---IVLAIWFIYGLYQTISKEKDPE 204 (257)
T ss_pred cchhhHH-HHHHHHHHHHHHHHHHHHHHHhcc-CCcccceeecccHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCHH
Confidence 32 111 122333333344443333311111 122 22222 4444443332 2222234445566888889999
Q ss_pred ChhHHHHHHHHHHHHHH
Q 021706 226 RPAFYKYISIMFILNAL 242 (309)
Q Consensus 226 r~SFY~Yv~iL~lLN~i 242 (309)
|+.||.--++.+.+=.+
T Consensus 205 k~~Fy~~f~~~~~lWFl 221 (257)
T PF10192_consen 205 KRKFYLPFGIIFSLWFL 221 (257)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999887777666554
No 5
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=58.74 E-value=4.3 Score=32.20 Aligned_cols=25 Identities=32% Similarity=0.640 Sum_probs=20.1
Q ss_pred HHhhhcccccccccchhhhhhhccCCCC
Q 021706 279 LADFFQEEDLRLENVYYSEMKDAGFFDA 306 (309)
Q Consensus 279 LadFF~ee~~~l~~~yYSemkDag~fd~ 306 (309)
-+||+++=|+.- -+.+||++|+|+.
T Consensus 45 YadFYknYD~~k---dFerM~~~G~f~S 69 (70)
T cd00927 45 YADFYKTYDAMK---DFERMRKAGLFQS 69 (70)
T ss_pred HHHHHHccChHH---HHHHHHHcCCccc
Confidence 367888888655 5899999999974
No 6
>PF03189 Otopetrin: Otopetrin; InterPro: IPR004878 The otopetrins are a group of proteins that are restricted to the metazoa. The structure of otopetrin-1 (Q80VM9 from SWISSPROT) shows it to have 12 transmembrane domains, with three conserved sub-domains (OD-1 to OD-III) []. Otopetrins modulate calcium homeostasis and influx of calcium in response to extracellular ATP. The otopetrins are required for normal formation of otoconia/otoliths in the inner ear. Otoconia are minute biomineral particles embedded in a gelatinous membrane that overlies the sensory epithelium in the inner ear. Gravity and acceleration cause the octoconia to deflect the stereocilia of sensory hair cells. Otoconia are required for normal processing of information regarding spatial orientation and acceleration.
Probab=57.76 E-value=2.1e+02 Score=29.26 Aligned_cols=191 Identities=12% Similarity=0.148 Sum_probs=108.1
Q ss_pred chhhhcccch----hhhHHHHHHHH-HHHHHHHhhchhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhhhhc----c
Q 021706 40 YKWLVECHGF----LHNVVLIVSSV-CFVLYLSFQAKKSFSKLSNGRSHIMIAYYGCLWLVSLLSLAWCCLQAWE----C 110 (309)
Q Consensus 40 ~~w~~~c~~~----~~dv~llvPn~-lFllFL~~~~~~s~~KL~~t~SpI~~tyY~llw~v~llnl~rc~lsm~~----~ 110 (309)
..+=.||+|. .--+++++-.+ .+.+|.+..-++.. +..--.++-.+-..+..++++..+-|+.+|-. .
T Consensus 229 ~~~~vdc~~a~~Glf~Gil~lv~tii~lilf~v~~~~~~~---~~~A~~~~~i~~~~l~~l~~~a~i~g~~~~r~l~~~~ 305 (441)
T PF03189_consen 229 HHISVDCSGASKGLFLGILVLVATIIVLILFFVLINDPEY---SELAILLVYIFELVLYSLSILAVIIGIYRMRKLKFSS 305 (441)
T ss_pred CceeEEeCCcchhHHHHHHHHHHHHHHhehhhheecCCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 3344788754 45555555444 34455555533322 22222345566677777888887777777765 2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHhHHHHHHHHHhhccccceeecCCC-CC
Q 021706 111 TRGKEVAWNILSLFTKSGMLFLEVSLLAFLFQGNYASGPEALARTFGISGLVVGLDIILKAVYLFGFGIPLFIDSNG-QS 189 (309)
Q Consensus 111 ~~~~~~~wniLwl~trf~lL~lEvSvvvFgL~Ghl~Sg~~si~rtl~iT~lis~~d~~lkaiy~f~~Gvplf~~~~~-~~ 189 (309)
...++..|++|=++.-+|....-+--++=+..+...+ ......++++++..+...+|..+.+.-=-..-..+++ ..
T Consensus 306 ~~~~~~LD~iLL~va~~G~~ly~~fsIia~~~~~~~~---~~~~l~l~~~ll~iiQv~~QtlFIl~a~rR~~~~~~~~~~ 382 (441)
T PF03189_consen 306 KNPGRSLDVILLVVAAFGEFLYSYFSIIAGIFTDPHG---SLNWLNLIYSLLRIIQVTLQTLFILDASRRRCSSEEQQRR 382 (441)
T ss_pred cCccccHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---CcChHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 3346779999999988888776665554444333333 2456678899999999999998887520010011111 11
Q ss_pred CCcc--chhHHHHHHHHHHHHHHHHHhcccchhccCCCChhHHHHHHHHHHHHH
Q 021706 190 PHVK--WGLWVVHRLVLTAVYGIILFMYHSKWRERLPARPAFYKYISIMFILNA 241 (309)
Q Consensus 190 ~hgg--~~fW~~ss~~f~lVY~~I~~Lp~t~~r~rLPar~SFY~Yv~iL~lLN~ 241 (309)
.-|| ..|-++..+.+.+++.+-. .|. +.-|-...||-+..=-.+.|.
T Consensus 383 kpgrq~itFLl~~N~~lw~~~tf~~----~~~-~~~~~~~~~yg~~~W~~i~~~ 431 (441)
T PF03189_consen 383 KPGRQIITFLLVCNISLWIINTFEA----KKA-GFNPVQIEFYGFWAWTIITHI 431 (441)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhc----ccc-cCChhHHHHhCccHHHHHHHH
Confidence 1222 2455555555555544432 222 336888889855544444443
No 7
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=49.67 E-value=2.5e+02 Score=29.89 Aligned_cols=121 Identities=10% Similarity=0.110 Sum_probs=62.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhchhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Q 021706 47 HGFLHNVVLIVSSVCFVLYLSFQAKKSFSKLSNGRSHIMIAYYGCLWLVSLLSLAWCCLQAWECTRGKEVAWNILSLFTK 126 (309)
Q Consensus 47 ~~~~~dv~llvPn~lFllFL~~~~~~s~~KL~~t~SpI~~tyY~llw~v~llnl~rc~lsm~~~~~~~~~~wniLwl~tr 126 (309)
+-++.|.++++|-++.-+=-+.|-||...=.-..---++.- |...+..++..++..++.... ......++.++-+.-
T Consensus 142 ~~~fld~~i~lPL~llgie~~~~~~k~~~~~~~~~l~~i~n-fYf~ym~~if~~iY~~~r~~~--~~~k~~~~~~~~~~~ 218 (843)
T PF09586_consen 142 NIMFLDAMILLPLLLLGIERLLKEKKWWLFIISLALALISN-FYFAYMICIFLVIYFLIRYFF--KNWKNFFKKILRFIG 218 (843)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 44678999999988876655555443211110000011222 334566777777777776652 233334555666666
Q ss_pred HHHHHHHHHHHHHHhh--cccCChhHHHHHHHHHHHHHHhHHHHHH
Q 021706 127 SGMLFLEVSLLAFLFQ--GNYASGPEALARTFGISGLVVGLDIILK 170 (309)
Q Consensus 127 f~lL~lEvSvvvFgL~--Ghl~Sg~~si~rtl~iT~lis~~d~~lk 170 (309)
...+.+=+|.++++=. +-+.+.|++-........-+...+.+.|
T Consensus 219 ~~ilg~~lsa~~llP~~~~~l~~~r~~~~~~~~~~~~~~~~~~l~~ 264 (843)
T PF09586_consen 219 SSILGVGLSAFLLLPTILSLLQSKRSGGSFSFSLFYPISYYDILSK 264 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccccchHHHHHHH
Confidence 6677777777765432 3444444444322223333344444443
No 8
>COG3083 Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]
Probab=48.98 E-value=3.8e+02 Score=29.04 Aligned_cols=144 Identities=17% Similarity=0.200 Sum_probs=84.7
Q ss_pred HHHHHHHHHh--------hhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHH--HHHH---H
Q 021706 96 SLLSLAWCCL--------QAWECTRGKEVAWNILSLFTKSGMLFLEVSLLAFLFQGNYASGPEALARTFG--ISGL---V 162 (309)
Q Consensus 96 ~llnl~rc~l--------sm~~~~~~~~~~wniLwl~trf~lL~lEvSvvvFgL~Ghl~Sg~~si~rtl~--iT~l---i 162 (309)
+++|++.+++ .-|-++..+.+---+-|+--+.++.++---+++|.|.-=..|-| +-|.+. .|++ +
T Consensus 23 a~fNi~~aivlG~rYl~~~dwp~tl~g~lY~~~s~lGhFsflvFA~yLlvlfpltfiv~s~r--l~r~l~vi~stag~tL 100 (600)
T COG3083 23 AFFNILLAIVLGSRYLFIMDWPSTLAGRLYLYVSILGHFSFLVFALYLLVLFPLTFIVLSQR--LFRFLSVILSTAGMTL 100 (600)
T ss_pred HHHHHHHHHHhCCcceeeccCcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccHH--HHHHHHHHHHHHHHHH
Confidence 4566666665 22223333444344455555666777777778888743334422 223222 2222 2
Q ss_pred HhHHHHHHHHHhh---ccccceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcccch---hccCCCChh-HHHHHHH
Q 021706 163 VGLDIILKAVYLF---GFGIPLFIDSNGQSPHVKWGLWVVHRLVLTAVYGIILFMYHSKW---RERLPARPA-FYKYISI 235 (309)
Q Consensus 163 s~~d~~lkaiy~f---~~Gvplf~~~~~~~~hgg~~fW~~ss~~f~lVY~~I~~Lp~t~~---r~rLPar~S-FY~Yv~i 235 (309)
-.+|+-+=..|-+ ++-|-+.++|+..-..+-|..-+++--+-+++ .|=++.| |+|.|+|++ |-+++++
T Consensus 101 LlvD~evf~rf~lHLn~vVW~Llvnpe~~e~S~dwqllf~s~p~I~Ll-----~llfs~W~w~KlRsl~r~rr~~r~l~a 175 (600)
T COG3083 101 LLVDSEVFQRFNLHLNPVVWELLVNPEQSEMSRDWQLLFASVPVILLL-----ELLFSTWSWQKLRSLTRQRRFVRPLAA 175 (600)
T ss_pred HhhhHHHHHHhcccccceEEEEEECCCCcccccchhhhhhHHHHHHHH-----HHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence 2457766666665 45567788888766678887766654433322 2234444 566899999 9999998
Q ss_pred HHHHHHHHHHHHHH
Q 021706 236 MFILNALALFACVL 249 (309)
Q Consensus 236 L~lLN~iq~~Gs~L 249 (309)
-++.-+ +||-|
T Consensus 176 ~f~~sf---iashl 186 (600)
T COG3083 176 FFFCSF---IASHL 186 (600)
T ss_pred HHHHHH---HHHHH
Confidence 877654 56777
No 9
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=48.44 E-value=2.4e+02 Score=28.47 Aligned_cols=31 Identities=10% Similarity=0.027 Sum_probs=22.4
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHhcccch
Q 021706 189 SPHVKWGLWVVHRLVLTAVYGIILFMYHSKW 219 (309)
Q Consensus 189 ~~hgg~~fW~~ss~~f~lVY~~I~~Lp~t~~ 219 (309)
-.++...|-.+..++-.+....-..+++.++
T Consensus 170 ~~~~a~~YF~~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 170 LKKSALGYFGTPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 3578888888888777776666667776655
No 10
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=45.65 E-value=7 Score=30.96 Aligned_cols=25 Identities=36% Similarity=0.668 Sum_probs=15.9
Q ss_pred HHhhhcccccccccchhhhhhhccCCCC
Q 021706 279 LADFFQEEDLRLENVYYSEMKDAGFFDA 306 (309)
Q Consensus 279 LadFF~ee~~~l~~~yYSemkDag~fd~ 306 (309)
-+||+++=|+.- .+.||+++|.|..
T Consensus 47 YadFYknYD~~k---~fe~M~~~G~fqS 71 (73)
T PF02937_consen 47 YADFYKNYDPMK---DFEEMRKAGIFQS 71 (73)
T ss_dssp HHHHHHT--HHH---HHHHHHHTT--SS
T ss_pred HHHHHHccChHH---HHHHHHhcCCccc
Confidence 367888877654 4889999999974
No 11
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=37.02 E-value=69 Score=32.10 Aligned_cols=71 Identities=17% Similarity=0.247 Sum_probs=44.5
Q ss_pred HHHHHHhHHHHHHHHHhhccccceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcccchhccCCCChhHHHHHHHHH
Q 021706 158 ISGLVVGLDIILKAVYLFGFGIPLFIDSNGQSPHVKWGLWVVHRLVLTAVYGIILFMYHSKWRERLPARPAFYKYISIMF 237 (309)
Q Consensus 158 iT~lis~~d~~lkaiy~f~~Gvplf~~~~~~~~hgg~~fW~~ss~~f~lVY~~I~~Lp~t~~r~rLPar~SFY~Yv~iL~ 237 (309)
...+++.-+-+. +..-.-+|+.-|-.++- .-|+.+|..+|+.|++++... ++ +. ++++.+.+|++.+.
T Consensus 48 ~a~~~~~~y~l~-~~~~~~~~~~~f~~~~~---~~g~~~w~~~~~~~~~~~~~~----~~---~~-~~~~~~~r~~~~~~ 115 (388)
T PRK13825 48 AAALVSAGYFLA-ASRGLPQGVAAFFGSDL---WPGLALWLAASLSFVLVHAAL----WT---AP-RGRARALRYLLAAV 115 (388)
T ss_pred HHHHHHHHHHHH-HhccccchhhhhccchH---HHHHHHHHHHHHHHHHHHHhh----cc---cc-ccccHHHHHHHHHH
Confidence 344555333333 44444466665543221 457889999999999988765 22 11 56688889988877
Q ss_pred HHH
Q 021706 238 ILN 240 (309)
Q Consensus 238 lLN 240 (309)
+..
T Consensus 116 l~~ 118 (388)
T PRK13825 116 LMA 118 (388)
T ss_pred HHh
Confidence 654
No 12
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=34.85 E-value=30 Score=29.04 Aligned_cols=13 Identities=15% Similarity=0.140 Sum_probs=6.9
Q ss_pred hhhhhccCCchHH
Q 021706 73 SFSKLSNGRSHIM 85 (309)
Q Consensus 73 s~~KL~~t~SpI~ 85 (309)
++||.|.+..|+.
T Consensus 23 ~rRR~r~G~~P~~ 35 (130)
T PF12273_consen 23 NRRRRRRGLQPIY 35 (130)
T ss_pred HHHHhhcCCCCcC
Confidence 4444444666664
No 13
>KOG4193 consensus G protein-coupled receptors [Signal transduction mechanisms]
Probab=34.10 E-value=68 Score=34.35 Aligned_cols=68 Identities=22% Similarity=0.287 Sum_probs=55.2
Q ss_pred hhhhcccchhhh-----HHHHHHHHHHHHHHHhhchhhhhhhccCCchHHHH--HHHHHHHHHHHHHHHHHhhhh
Q 021706 41 KWLVECHGFLHN-----VVLIVSSVCFVLYLSFQAKKSFSKLSNGRSHIMIA--YYGCLWLVSLLSLAWCCLQAW 108 (309)
Q Consensus 41 ~w~~~c~~~~~d-----v~llvPn~lFllFL~~~~~~s~~KL~~t~SpI~~t--yY~llw~v~llnl~rc~lsm~ 108 (309)
=|+..-.+++|- .++++-|+.+++--++|+.+...+++...++...+ +-..+-+..++++.|++-=++
T Consensus 462 CWl~~~~~~~~~F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~~~~~~~~~~~~~~~l~L~~lLGlTW~fgi~s 536 (610)
T KOG4193|consen 462 CWLDTQNGFIWSFLGPVTLIILVNIVMFVVTLKKLLRRLSKLQPIASKLENISLIRSALALLFLLGLTWIFGIFS 536 (610)
T ss_pred eEEecCCceEEEEehHHHHHHHHHHHHHHHHHHHHhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888888776 67889999999999999999999999998888766 666677777888877765443
No 14
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=34.03 E-value=19 Score=37.18 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=26.8
Q ss_pred HhhcccCChhHHHHHHHHHHHHHHhHHHHHHH
Q 021706 140 LFQGNYASGPEALARTFGISGLVVGLDIILKA 171 (309)
Q Consensus 140 gL~Ghl~Sg~~si~rtl~iT~lis~~d~~lka 171 (309)
|+.||.|||++.+.|.+--++--|.+|-.-|.
T Consensus 11 GiLGHvDSGKTtLarals~~~STaAFDk~pqS 42 (522)
T KOG0461|consen 11 GILGHVDSGKTTLARALSELGSTAAFDKHPQS 42 (522)
T ss_pred eeEeeccCchHHHHHHHHhhccchhhccCCcc
Confidence 56799999999999999887777877776664
No 15
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=32.63 E-value=87 Score=25.70 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHH----hcccchhccCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 021706 197 WVVHRLVLTAVYGIILF----MYHSKWRERLPARPAFYKYISIMFILNALALFACVL 249 (309)
Q Consensus 197 W~~ss~~f~lVY~~I~~----Lp~t~~r~rLPar~SFY~Yv~iL~lLN~iq~~Gs~L 249 (309)
|+.+..+++++|..... +|..++++-+|.=| .|+.+++-...+..+|=++
T Consensus 7 ~l~~~~~l~~~w~~l~~~~~~~~~~~~~~ii~~lP---~~~Lv~fG~Ysl~~lgy~v 60 (91)
T PF08285_consen 7 WLSALLLLSALWLALLLGLLPLPPEPQQEIIPYLP---FYALVSFGCYSLFTLGYGV 60 (91)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCchhHHHHHHHhh---HHHHHHHHHHHHHHHHHhh
Confidence 77888888889888776 55566777755555 4888888888888887777
No 16
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=27.99 E-value=2.7e+02 Score=28.00 Aligned_cols=73 Identities=21% Similarity=0.354 Sum_probs=49.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhhcc------------cc------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021706 82 SHIMIAYYGCLWLVSLLSLAWCCLQAWEC------------TR------GKEVAWNILSLFTKSGMLFLEVSLLAFLFQG 143 (309)
Q Consensus 82 SpI~~tyY~llw~v~llnl~rc~lsm~~~------------~~------~~~~~wniLwl~trf~lL~lEvSvvvFgL~G 143 (309)
-||....++.+|+..+.-+-|-+-+.|-+ .| ++-+||.+.+.. --+.|+.||
T Consensus 138 ~~~ls~lfg~iwVlPiF~lSkiV~alWF~DIa~aa~rv~k~~P~p~p~~Sk~~Ad~Lfs~l----------~Q~lFLiQg 207 (360)
T KOG3966|consen 138 HPILSLLFGYIWVLPIFFLSKIVQALWFSDIAGAAMRVLKLPPPPVPPFSKMLADTLFSAL----------HQILFLIQG 207 (360)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH----------HHHHHHHHH
Confidence 48899999999999998888877777631 01 345566555443 334577888
Q ss_pred ccCChhHHHHHHHHHHHHHHhHHHH
Q 021706 144 NYASGPEALARTFGISGLVVGLDII 168 (309)
Q Consensus 144 hl~Sg~~si~rtl~iT~lis~~d~~ 168 (309)
-+.+ +--+=+++.+++.+|..
T Consensus 208 Mlv~----l~Pi~lVg~~i~~lHm~ 228 (360)
T KOG3966|consen 208 MLVQ----LLPIPLVGPVIVYLHMA 228 (360)
T ss_pred HHHh----hcChhhcchHHHHHHHH
Confidence 8777 44555677777766643
No 17
>PF13041 PPR_2: PPR repeat family
Probab=27.93 E-value=32 Score=23.53 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=26.8
Q ss_pred HHHHHHHhhhcccccccccchhhhhhhccCC
Q 021706 274 IYVTFLADFFQEEDLRLENVYYSEMKDAGFF 304 (309)
Q Consensus 274 lY~TFLadFF~ee~~~l~~~yYSemkDag~f 304 (309)
.|-|.++.|.++.+++.-..-|++|++.|.-
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~ 35 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIK 35 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 4788999999999988777899999999863
No 18
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=27.78 E-value=29 Score=20.70 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=25.5
Q ss_pred HHHHHHHhhhcccccccccchhhhhhhccCC
Q 021706 274 IYVTFLADFFQEEDLRLENVYYSEMKDAGFF 304 (309)
Q Consensus 274 lY~TFLadFF~ee~~~l~~~yYSemkDag~f 304 (309)
.|-+.++.|.+..+++.-..-|.+|+++|.-
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~ 32 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIE 32 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 3677888899988887777889999999864
No 19
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=27.63 E-value=6.3e+02 Score=25.92 Aligned_cols=127 Identities=21% Similarity=0.206 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc-------cc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChhHHHHH----H
Q 021706 88 YYGCLWLVSLLSLAWCCLQAWE-------CT-RGKEVAWNILSLFTKSGMLFLEVSLLAFLFQGNYASGPEALAR----T 155 (309)
Q Consensus 88 yY~llw~v~llnl~rc~lsm~~-------~~-~~~~~~wniLwl~trf~lL~lEvSvvvFgL~Ghl~Sg~~si~r----t 155 (309)
=|.++|++-+.|+.=+.+|.-. .+ -++...++..|-+..+..+.+|+--+++-++ +...+.-++.- .
T Consensus 47 Gy~ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~ia-e~~G~aial~ll~~ip 125 (416)
T COG1914 47 GYSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGIATDIA-EVAGIAIALNLLFGIP 125 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCh
Confidence 3889999999999999998764 12 3567788899999999999999999988775 33333333332 2
Q ss_pred HHHHHHHHhHHHHHHHHHhhccccceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcccchhcc-----CCCChhH
Q 021706 156 FGISGLVVGLDIILKAVYLFGFGIPLFIDSNGQSPHVKWGLWVVHRLVLTAVYGIILFMYHSKWRER-----LPARPAF 229 (309)
Q Consensus 156 l~iT~lis~~d~~lkaiy~f~~Gvplf~~~~~~~~hgg~~fW~~ss~~f~lVY~~I~~Lp~t~~r~r-----LPar~SF 229 (309)
+....+|..+|.++=. ..+ |.- .--+...++..-.+.+.+|-+...-|. |.+. +|+.|.+
T Consensus 126 ~~~g~iItav~~~iil--~~~-~~r---------~~E~~v~~l~~~~~i~~~~~~~~~~p~--~~~~~~~~f~P~~~~~ 190 (416)
T COG1914 126 LIIGAVITAVDVLIIL--LLK-GYR---------LLERVVLILGLVLVILFVYVAFVAPPP--WGEVAKGDFLPSSPWT 190 (416)
T ss_pred HHHHHHHHHHHHHHHH--Hhc-chH---------HHHHHHHHHHHHHHHHHHHHHhhcCCC--HHHHhccCCCCCCcch
Confidence 2344445555544311 111 110 012344555555555666666666665 6654 7888886
No 20
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=26.90 E-value=1.3e+02 Score=29.45 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhchhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHh
Q 021706 50 LHNVVLIVSSVCFVLYLSFQAKKSFSKLSNGRSHIMIAYYGCLWLVSLLSLAWCCL 105 (309)
Q Consensus 50 ~~dv~llvPn~lFllFL~~~~~~s~~KL~~t~SpI~~tyY~llw~v~llnl~rc~l 105 (309)
+-|++..+..++.+.++....++.++|-+..+ ...+.-.+.++..+..+.|.+-
T Consensus 25 vgdi~~~~~il~ll~~~~~~~~~~~k~~~~~~--l~~~~~~~~~~y~~F~~~WGlN 78 (318)
T PF12725_consen 25 VGDILYYLLILFLLYYLIRLIRKIFKKKKRFK--LLNILFFLSVLYFLFYLLWGLN 78 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHHhhhh
Confidence 44777777666655555555444433333222 5667777888888888888876
No 21
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=24.16 E-value=38 Score=20.09 Aligned_cols=30 Identities=13% Similarity=0.400 Sum_probs=24.1
Q ss_pred HHHHHHHhhhcccccccccchhhhhhhccC
Q 021706 274 IYVTFLADFFQEEDLRLENVYYSEMKDAGF 303 (309)
Q Consensus 274 lY~TFLadFF~ee~~~l~~~yYSemkDag~ 303 (309)
.|-+.++.|-+..+++--..-|.+|++.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 467788888888887776678999999885
No 22
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=23.34 E-value=4.3e+02 Score=22.37 Aligned_cols=104 Identities=18% Similarity=0.077 Sum_probs=56.1
Q ss_pred ccCChhHHHHHHHHHHHHHHhHHHHHHHHHhhccccceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhcccchhccC
Q 021706 144 NYASGPEALARTFGISGLVVGLDIILKAVYLFGFGIPLFIDSNGQSPHVKWGLWVVHRLVLTAVYGIILFMYHSKWRERL 223 (309)
Q Consensus 144 hl~Sg~~si~rtl~iT~lis~~d~~lkaiy~f~~Gvplf~~~~~~~~hgg~~fW~~ss~~f~lVY~~I~~Lp~t~~r~rL 223 (309)
+.+..+.-.+|++.++..++.+=.+..+ ...+...+.....+..-..-.+.....++.|..++++=..+-+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~y~~l~~ll~~~~~~~- 81 (163)
T PF04235_consen 9 RPEEHRKLLRRLLLIGLAVGLPLALLSA------ASWLSAWPSPPAAHLSSVLYMLGGPLLALGYVALLILLCQKRPRQ- 81 (163)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc-
Confidence 3444477888999998888865555544 011111222233344445566677778888877665543222211
Q ss_pred CCChhHHHHHHHHHHHH-HHHHHHHHH--hcCCce
Q 021706 224 PARPAFYKYISIMFILN-ALALFACVL--NGASFG 255 (309)
Q Consensus 224 Par~SFY~Yv~iL~lLN-~iq~~Gs~L--~~~~~G 255 (309)
.=-....+++=|++=| ..|++-+.. ++.+.|
T Consensus 82 -~~~~~l~~~GrmaLT~Yi~qsii~~~lf~~~~l~ 115 (163)
T PF04235_consen 82 -RLLRPLAAVGRMALTNYILQSIIGTLLFYGYGLG 115 (163)
T ss_pred -HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 0134566667676644 556654544 344444
No 23
>COG2142 SdhD Succinate dehydrogenase, hydrophobic anchor subunit [Energy production and conversion]
Probab=21.59 E-value=5.2e+02 Score=22.19 Aligned_cols=91 Identities=18% Similarity=0.222 Sum_probs=47.6
Q ss_pred cccccchhhhcccchhhhHHHHHHHHHHHHHHHhhch-hhhhhh-ccCCchHHHHHHHHHHHHHHHHHHHHHhhh-hccc
Q 021706 35 FGSGLYKWLVECHGFLHNVVLIVSSVCFVLYLSFQAK-KSFSKL-SNGRSHIMIAYYGCLWLVSLLSLAWCCLQA-WECT 111 (309)
Q Consensus 35 ~~~~~~~w~~~c~~~~~dv~llvPn~lFllFL~~~~~-~s~~KL-~~t~SpI~~tyY~llw~v~llnl~rc~lsm-~~~~ 111 (309)
.-+|.++|+..= -..++++|-+.+.++.+..-+ ...+-. ..=++|....+..+.-+.+++- +|-.++- ++..
T Consensus 10 ar~G~~~~l~qR----vTav~Lv~l~~~~l~~~l~~~~~~y~~~~~~~s~p~~~v~~lL~l~~~l~H-~~~Glr~Ii~DY 84 (117)
T COG2142 10 ARYGSHDWLLQR----VTAVILVLLVIWHLYFLLTWLNATYAAWVAFLANPFWKVFLLLLLVAALIH-AWNGLRVIIEDY 84 (117)
T ss_pred cccchHHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHH-HHhhhHHHHHHH
Confidence 334566676543 378899999999887764443 222222 2334677777776655555443 3333322 2233
Q ss_pred chhhHHHHHHHHHHHHHHH
Q 021706 112 RGKEVAWNILSLFTKSGML 130 (309)
Q Consensus 112 ~~~~~~wniLwl~trf~lL 130 (309)
.-++...+.+=..+.+.++
T Consensus 85 i~~~~~r~~l~~~~~~~~v 103 (117)
T COG2142 85 IKPEKLRLALQILLVLALV 103 (117)
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 24
>PF09529 Intg_mem_TP0381: Integral membrane protein (intg_mem_TP0381); InterPro: IPR011737 This entry represents a family of hydrophobic proteins with seven predicted transmembrane alpha helices. Members are found in Bacillus subtilis (ywaF), TP0381 from Treponema pallidum (TP0381), Streptococcus pyogenes, Rhodococcus erythropolis, etc.
Probab=21.46 E-value=2.8e+02 Score=24.86 Aligned_cols=92 Identities=12% Similarity=0.216 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-cccCChhHHHHHHHHHHHHHHhHHHHHHHH----HhhccccceeecCCCCCCCccc
Q 021706 120 ILSLFTKSGMLFLEVSLLAFLFQ-GNYASGPEALARTFGISGLVVGLDIILKAV----YLFGFGIPLFIDSNGQSPHVKW 194 (309)
Q Consensus 120 iLwl~trf~lL~lEvSvvvFgL~-Ghl~Sg~~si~rtl~iT~lis~~d~~lkai----y~f~~Gvplf~~~~~~~~hgg~ 194 (309)
+-..+.+.+++. +.++.+. .+..-.+.+++|++.++.+++.+-..+-.+ |-+...-|+-...-+. =|+|
T Consensus 126 ~~f~i~H~~li~----~~~~~~~~~~~~p~~k~~~~~~~~~~~~~~~~~~~N~~~~~NY~yl~~~p~~~s~l~~--~~~~ 199 (225)
T PF09529_consen 126 IQFFISHGLLIL----APLYLLFVEKYRPTFKDFWRSFIFLNILAIIIFIVNYILGSNYFYLNEPPEGNSILDF--FGPW 199 (225)
T ss_pred HHHHHHHHHHHH----HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHCCCeEeecCCCCCCcHHHH--cccc
Confidence 334444444443 3334443 455555788899999888877554444333 3332222200000012 2788
Q ss_pred hhHHHHHHHHHHHHHHHHHhccc
Q 021706 195 GLWVVHRLVLTAVYGIILFMYHS 217 (309)
Q Consensus 195 ~fW~~ss~~f~lVY~~I~~Lp~t 217 (309)
-+-.+...+...++..++-+|+.
T Consensus 200 p~yii~~~~l~~~~~~l~ylpf~ 222 (225)
T PF09529_consen 200 PFYIIVLILLGIILFLLLYLPFR 222 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888888888888864
No 25
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=20.19 E-value=5e+02 Score=27.76 Aligned_cols=86 Identities=16% Similarity=0.249 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhchhhhhhhccCCchH----HHHHHHHHHHHHHHHHHHHHhhhhcc-cchhhHHHHHHHHHHHHH-H
Q 021706 56 IVSSVCFVLYLSFQAKKSFSKLSNGRSHI----MIAYYGCLWLVSLLSLAWCCLQAWEC-TRGKEVAWNILSLFTKSG-M 129 (309)
Q Consensus 56 lvPn~lFllFL~~~~~~s~~KL~~t~SpI----~~tyY~llw~v~llnl~rc~lsm~~~-~~~~~~~wniLwl~trf~-l 129 (309)
.+--..|......-+.+..+|||-.|.-+ .+-|-..+.+..+.+++|-++++.-+ .+.=+--|+.+|+++-|= +
T Consensus 348 ai~d~~f~~wIF~SL~~Tlk~Lr~rRn~vKl~lYr~F~n~l~~~Vvas~~~i~~~~~~~~~~~~~~~Wk~~Wv~~a~W~~ 427 (518)
T KOG2568|consen 348 AILDAAFIYWIFISLAKTLKKLRLRRNIVKLSLYRKFTNTLAFSVVASFAFILVETIFYSIMSCNKDWKERWVDTAFWPL 427 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhccHHH
Confidence 33344555566667788899999877655 34444556666677888888887764 334455899999998653 3
Q ss_pred HHHH-HHHHHHHh
Q 021706 130 LFLE-VSLLAFLF 141 (309)
Q Consensus 130 L~lE-vSvvvFgL 141 (309)
|+.. +.++.|+-
T Consensus 428 l~~~iLvvI~~LW 440 (518)
T KOG2568|consen 428 LFFLILVVIMFLW 440 (518)
T ss_pred HHHHHHHHHHHhc
Confidence 3333 34444554
Done!