Query 021706
Match_columns 309
No_of_seqs 51 out of 53
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 08:06:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021706.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021706hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_I STA, cytochrome C oxida 57.7 2.6 8.8E-05 32.5 0.4 24 280-306 48-71 (73)
2 2k9p_A Pheromone alpha factor 24.9 1.1E+02 0.0037 23.6 4.8 26 79-108 45-70 (80)
3 1btq_A BAND 3 anion transport 21.5 24 0.00083 22.2 0.4 16 260-275 4-19 (26)
4 4ev6_A Magnesium transport pro 19.2 2E+02 0.007 26.1 6.3 56 152-215 278-334 (339)
5 1bnx_A Protein (BAND 3); human 15.6 73 0.0025 21.1 1.7 14 262-275 13-26 (34)
6 3gia_A Uncharacterized protein 12.0 2.1E+02 0.0073 25.7 4.4 22 205-227 352-373 (444)
7 3arc_K Photosystem II reaction 10.4 1.2E+02 0.004 20.7 1.5 26 50-75 12-37 (37)
8 2iub_A CORA, divalent cation t 10.1 2.3E+02 0.0079 26.0 4.0 52 152-211 302-354 (363)
9 3am6_A Rhodopsin-2, AR2; seven 9.6 3E+02 0.01 24.2 4.3 45 185-236 2-47 (229)
10 3arc_D Photosystem II reaction 8.4 8.4E+02 0.029 23.5 7.1 76 33-112 85-162 (342)
No 1
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=57.72 E-value=2.6 Score=32.47 Aligned_cols=24 Identities=38% Similarity=0.699 Sum_probs=18.7
Q ss_pred HhhhcccccccccchhhhhhhccCCCC
Q 021706 280 ADFFQEEDLRLENVYYSEMKDAGFFDA 306 (309)
Q Consensus 280 adFF~ee~~~l~~~yYSemkDag~fd~ 306 (309)
+||+++=|+.- -|.|||++|+|+.
T Consensus 48 adFYknYD~~k---~ferMk~aG~fqS 71 (73)
T 1v54_I 48 ADFYRNYDSMK---DFEEMRKAGIFQS 71 (73)
T ss_dssp HHHHHTCCHHH---HHHHHHHTTCCSS
T ss_pred HHHHHhcCcHH---HHHHHHHcccccc
Confidence 56787777544 4899999999974
No 2
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=24.87 E-value=1.1e+02 Score=23.65 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=17.5
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021706 79 NGRSHIMIAYYGCLWLVSLLSLAWCCLQAW 108 (309)
Q Consensus 79 ~t~SpI~~tyY~llw~v~llnl~rc~lsm~ 108 (309)
..|||||+.= -+.-++|++|+.++..
T Consensus 45 krrspiF~lN----~~~L~l~iirs~l~~~ 70 (80)
T 2k9p_A 45 SRKTPIFIIN----QVSLFLIILHSALYFK 70 (80)
T ss_dssp CSCCCHHHHH----HHHHHHHHHHHHHHHH
T ss_pred cccChhhHHH----HHHHHHHHHHHHHHHH
Confidence 4789997432 2334778899888653
No 3
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=21.50 E-value=24 Score=22.22 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=13.3
Q ss_pred cchhhHHHHhhhHHHH
Q 021706 260 GVTNVCYHAFYLPLIY 275 (309)
Q Consensus 260 dvTt~~Yfaly~PLlY 275 (309)
..+.|+||++.+|-|-
T Consensus 4 aa~~FlyFa~l~paIa 19 (26)
T 1btq_A 4 AAVIFIYFAALSPAIT 19 (26)
T ss_pred HHHHHHHHHHHcchhc
Confidence 4578999999999874
No 4
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=19.23 E-value=2e+02 Score=26.07 Aligned_cols=56 Identities=14% Similarity=0.450 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhccc-cceeecCCCCCCCccchhHHHHHHHHHHHHHHHHHhc
Q 021706 152 LARTFGISGLVVGLDIILKAVYLFGFG-IPLFIDSNGQSPHVKWGLWVVHRLVLTAVYGIILFMY 215 (309)
Q Consensus 152 i~rtl~iT~lis~~d~~lkaiy~f~~G-vplf~~~~~~~~hgg~~fW~~ss~~f~lVY~~I~~Lp 215 (309)
+-++|.+-+.|-.|=+++-.+|-+-|+ .|+ -|..|+||++-.+..+++-+++..+-
T Consensus 278 ~mk~LTiit~IflP~T~IaGiyGMNf~~mPe--------l~~~~gy~~~l~~m~~~~~~~~~~fk 334 (339)
T 4ev6_A 278 IMKILTMVTTIFAVPMWITGIYGMNFSYLPL--------ANNPQGFWLVMALMVVIIMIFVYIFR 334 (339)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHTTCCCSCCTT--------SSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcCCCCCC--------ccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 446677766676677777778877664 452 25567888876655555444444433
No 5
>1bnx_A Protein (BAND 3); human erythrocyte anion transporter, transmembrane, synthetic peptide, electron transport; NMR {Synthetic} SCOP: j.35.1.1
Probab=15.57 E-value=73 Score=21.09 Aligned_cols=14 Identities=29% Similarity=0.249 Sum_probs=12.2
Q ss_pred hhhHHHHhhhHHHH
Q 021706 262 TNVCYHAFYLPLIY 275 (309)
Q Consensus 262 Tt~~Yfaly~PLlY 275 (309)
|+++||++.+|-|-
T Consensus 13 ~~fiyFa~l~PaIa 26 (34)
T 1bnx_A 13 VIFIYFAALSPAIT 26 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88999999999863
No 6
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=11.97 E-value=2.1e+02 Score=25.74 Aligned_cols=22 Identities=14% Similarity=0.313 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcccchhccCCCCh
Q 021706 205 TAVYGIILFMYHSKWRERLPARP 227 (309)
Q Consensus 205 ~lVY~~I~~Lp~t~~r~rLPar~ 227 (309)
.+.|.++. +.+-++|+|-|.+|
T Consensus 352 ~~~~~~~~-~~~~~~r~~~~~~~ 373 (444)
T 3gia_A 352 MVIYLFVI-LSHYILIDEVGGRK 373 (444)
T ss_dssp HHHHHHHH-HHHHHTHHHHCCCH
T ss_pred HHHHHHHH-HHHHHhhhcCCCcc
Confidence 34555443 34567888788876
No 7
>3arc_K Photosystem II reaction center protein K; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_K* 1s5l_K* 2axt_K* 3bz1_K* 3bz2_K* 3kzi_K* 3prq_K* 3prr_K* 3a0b_K* 3a0h_K*
Probab=10.41 E-value=1.2e+02 Score=20.75 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhchhhhh
Q 021706 50 LHNVVLIVSSVCFVLYLSFQAKKSFS 75 (309)
Q Consensus 50 ~~dv~llvPn~lFllFL~~~~~~s~~ 75 (309)
+-|++=+||.+.|++=..||+..++|
T Consensus 12 ivDvmPiIPv~f~lLafvWQAav~fR 37 (37)
T 3arc_K 12 LVDVLPVIPVLFLALAFVWQAAVGFR 37 (37)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhchHHHHHHHHHHHHHHhhcCC
Confidence 45899999999999999999876653
No 8
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=10.10 E-value=2.3e+02 Score=26.01 Aligned_cols=52 Identities=17% Similarity=0.299 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhccc-cceeecCCCCCCCccchhHHHHHHHHHHHHHHH
Q 021706 152 LARTFGISGLVVGLDIILKAVYLFGFG-IPLFIDSNGQSPHVKWGLWVVHRLVLTAVYGII 211 (309)
Q Consensus 152 i~rtl~iT~lis~~d~~lkaiy~f~~G-vplf~~~~~~~~hgg~~fW~~ss~~f~lVY~~I 211 (309)
+-++|.+-+.|-.+=+++-.+|-+-|+ .|+. |.+|+||.+--+..+++-+.+
T Consensus 302 imk~LTiit~IflP~T~IaGiyGMNf~~mPel--------~~~~Gy~~~l~~m~~i~~~~~ 354 (363)
T 2iub_A 302 VMKVLTIIATIFMPLTFIAGIYGMNFEYMPEL--------RWKWGYPVVLAVMGVIAVIMV 354 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC----------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc--------cCcHHHHHHHHHHHHHHHHHH
Confidence 445666666666565666566666554 4532 456677776555444443333
No 9
>3am6_A Rhodopsin-2, AR2; seven trans-membrane, transport protein; HET: RET CLR; 3.20A {Acetabularia acetabulum}
Probab=9.58 E-value=3e+02 Score=24.18 Aligned_cols=45 Identities=16% Similarity=0.128 Sum_probs=26.5
Q ss_pred CCCCCCCccchhHHHHHHHHHHH-HHHHHHhcccchhccCCCChhHHHHHHHH
Q 021706 185 SNGQSPHVKWGLWVVHRLVLTAV-YGIILFMYHSKWRERLPARPAFYKYISIM 236 (309)
Q Consensus 185 ~~~~~~hgg~~fW~~ss~~f~lV-Y~~I~~Lp~t~~r~rLPar~SFY~Yv~iL 236 (309)
+|..++||.--+|.+.....+.. ++++ .+.|.|+|+.-+.|+..+
T Consensus 2 ~~~~~~~gs~~lw~~~a~m~~~tv~f~~-------~~~~~~~~~r~~~~~~~l 47 (229)
T 3am6_A 2 ADVETETGMIAQWIVFAIMAAAAIAFGV-------AVHFRPSELKSAYYINIA 47 (229)
T ss_dssp CBCCCHHHHHHHHHHHHHHHHHHHHHHH-------HGGGCC--CHHHHHHHHH
T ss_pred cchhhcchhHHHHHHHHHHHHHHHHHHH-------HHhccCCcceehhHHHHH
Confidence 46788899999999877755433 3322 233556665555555543
No 10
>3arc_D Photosystem II reaction center D2 protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_D* 1izl_D* 1s5l_D* 1w5c_D* 2axt_D* 3bz2_D* 3kzi_D* 3prq_D* 3prr_D* 3a0b_D* 3a0h_D*
Probab=8.39 E-value=8.4e+02 Score=23.53 Aligned_cols=76 Identities=12% Similarity=0.044 Sum_probs=55.8
Q ss_pred cccccccchhhhcccchhhhHHHHHHHHHHHHHHHhhchhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhhhh--cc
Q 021706 33 SFFGSGLYKWLVECHGFLHNVVLIVSSVCFVLYLSFQAKKSFSKLSNGRSHIMIAYYGCLWLVSLLSLAWCCLQAW--EC 110 (309)
Q Consensus 33 ~~~~~~~~~w~~~c~~~~~dv~llvPn~lFllFL~~~~~~s~~KL~~t~SpI~~tyY~llw~v~llnl~rc~lsm~--~~ 110 (309)
...+.++..|+. +|=+|-.+.+--.+-++.+.+-+-.+|+ || ..|-||-.+|=+-+|+...+.++|=++|-- ++
T Consensus 85 p~~~~~~~~wL~--~GG~w~~i~~~~~~sv~~w~~R~~e~ar-~L-GMg~hia~AFsaaI~~~~~l~lirPilmGSWs~a 160 (342)
T 3arc_D 85 PEAQGDFTRWCQ--LGGLWTFIALHGAFGLIGFMLRQFEIAR-LV-GVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFA 160 (342)
T ss_dssp TTTTTCHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-TCCCHHHHHHHHHHHHHHHHHTHHHHHSSSGGGS
T ss_pred CcccCCCChhHh--cCCcHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCcchhHHHHHHHHHHHHHHHhhhccccccccc
Confidence 334445556885 4567888777777777777776666553 34 667799999999999999999999998543 35
Q ss_pred cc
Q 021706 111 TR 112 (309)
Q Consensus 111 ~~ 112 (309)
.|
T Consensus 161 ~P 162 (342)
T 3arc_D 161 PS 162 (342)
T ss_dssp CC
T ss_pred CC
Confidence 66
Done!