Query 021706
Match_columns 309
No_of_seqs 51 out of 53
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 08:06:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021706.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021706hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54i_ f.23.3.1 (I:) Mitochon 52.3 1.7 0.00012 31.9 0.4 40 262-306 32-71 (73)
2 d3cx5c1 f.32.1.1 (C:262-385) M 22.0 61 0.0044 24.5 5.0 66 207-272 34-104 (124)
3 d1kf6c_ f.21.2.2 (C:) Fumarate 14.9 2.5E+02 0.018 21.7 9.4 69 56-124 32-115 (130)
4 d1jnya3 c.37.1.8 (A:4-227) Elo 10.3 61 0.0044 25.5 2.2 18 141-158 8-25 (224)
5 d2axtk1 f.23.36.1 (K:10-46) Ph 10.2 56 0.0041 20.6 1.5 26 50-75 12-37 (37)
6 d1kk1a3 c.37.1.8 (A:6-200) Ini 8.3 71 0.0052 24.1 1.8 16 142-157 11-26 (195)
7 d2c78a3 c.37.1.8 (A:9-212) Elo 7.4 81 0.0059 24.6 1.8 17 141-157 8-24 (204)
8 d2dy1a2 c.37.1.8 (A:8-274) Elo 7.3 83 0.0061 26.2 1.9 20 141-160 7-26 (267)
9 d1zunb3 c.37.1.8 (B:16-237) Su 7.3 87 0.0063 25.0 1.9 17 142-158 15-31 (222)
10 d2qn6a3 c.37.1.8 (A:2-206) Ini 7.2 85 0.0062 24.0 1.8 17 141-157 13-29 (205)
No 1
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]}
Probab=52.32 E-value=1.7 Score=31.92 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=25.2
Q ss_pred hhhHHHHhhhHHHHHHHHHhhhcccccccccchhhhhhhccCCCC
Q 021706 262 TNVCYHAFYLPLIYVTFLADFFQEEDLRLENVYYSEMKDAGFFDA 306 (309)
Q Consensus 262 Tt~~Yfaly~PLlY~TFLadFF~ee~~~l~~~yYSemkDag~fd~ 306 (309)
+....|...=|= -.=-+||+++=|.+- .|.+|+++|.|+.
T Consensus 32 a~~~Kf~v~epr--KkaYadFYknYDa~K---dFe~Mr~aGvFqS 71 (73)
T d1v54i_ 32 ATFYKFAVAEKR--KKAYADFYRNYDSMK---DFEEMRKAGIFQS 71 (73)
T ss_dssp HHHHHHHTHHHH--HHHHHHHHHTCCHHH---HHHHHHHTTCCSS
T ss_pred HHHHHHHhccHh--HHHHHHHHHccchhh---hHHHHHHcccccc
Confidence 344445555553 222357777776444 5889999999975
No 2
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.00 E-value=61 Score=24.53 Aligned_cols=66 Identities=18% Similarity=0.320 Sum_probs=34.1
Q ss_pred HHHHHHHhcccchhccC----CCChhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEe-cchhhHHHHhhhH
Q 021706 207 VYGIILFMYHSKWRERL----PARPAFYKYISIMFILNALALFACVLNGASFGYWLY-GVTNVCYHAFYLP 272 (309)
Q Consensus 207 VY~~I~~Lp~t~~r~rL----Par~SFY~Yv~iL~lLN~iq~~Gs~L~~~~~GlClv-dvTt~~Yfaly~P 272 (309)
.-..|++|-..+|-||- +..+-.++....+++.|.+-..-.|=+....-+..+ -+.|..||++|.=
T Consensus 34 ~~~si~il~~lP~l~~s~~~s~~~rp~~k~~fw~fv~~fi~LtwlG~~p~e~p~~~~gqi~s~~YF~~Fli 104 (124)
T d3cx5c1 34 MFAAILVLLVLPFTDRSVVRGNTFKVLSKFFFFIFVFNFVLLGQIGACHVEVPYVLMGQIATFIYFAYFLI 104 (124)
T ss_dssp HHHHHHGGGGHHHHCCCSSSSSTTCHHHHHHHHHHHHHHHHHHHHHTSCSCTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 33444445555566664 454555566666667666532211112222222222 3678999998853
No 3
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=14.90 E-value=2.5e+02 Score=21.67 Aligned_cols=69 Identities=16% Similarity=0.033 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhhchh------h-hhhhccCCchHHHHHHHHHHHHHHHHHHHHHhhhhcccc--------hhhHHHHH
Q 021706 56 IVSSVCFVLYLSFQAKK------S-FSKLSNGRSHIMIAYYGCLWLVSLLSLAWCCLQAWECTR--------GKEVAWNI 120 (309)
Q Consensus 56 lvPn~lFllFL~~~~~~------s-~~KL~~t~SpI~~tyY~llw~v~llnl~rc~lsm~~~~~--------~~~~~wni 120 (309)
.+|.+.|-+.|++..-. + -.=+.--++|+++...++.-.-++++-.==+--|=+.+| +.+..-+.
T Consensus 32 ~v~~~~f~lvLl~Gl~~L~~g~~aw~~fv~flqnP~vv~lniiaLaa~L~Ha~TwF~l~Pk~m~i~v~~~~~~~~~iv~~ 111 (130)
T d1kf6c_ 32 AVPAVWFSIELIFGLFALKNGPEAWAGFVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKS 111 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHGGGGCCCBSSSSBCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhcCccCChHHHHHH
Confidence 57888887777765322 2 122445688999888877666666653322222223444 45666677
Q ss_pred HHHH
Q 021706 121 LSLF 124 (309)
Q Consensus 121 Lwl~ 124 (309)
+|..
T Consensus 112 ~wa~ 115 (130)
T d1kf6c_ 112 LWAV 115 (130)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7744
No 4
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=10.29 E-value=61 Score=25.51 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=14.9
Q ss_pred hhcccCChhHHHHHHHHH
Q 021706 141 FQGNYASGPEALARTFGI 158 (309)
Q Consensus 141 L~Ghl~Sg~~si~rtl~i 158 (309)
+.||.|+||+.+.-.|+.
T Consensus 8 viGHVd~GKTTL~~~Ll~ 25 (224)
T d1jnya3 8 VIGHVDHGKSTLVGRLLM 25 (224)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHH
Confidence 459999999999877765
No 5
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.17 E-value=56 Score=20.62 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhchhhhh
Q 021706 50 LHNVVLIVSSVCFVLYLSFQAKKSFS 75 (309)
Q Consensus 50 ~~dv~llvPn~lFllFL~~~~~~s~~ 75 (309)
+-|++=+||.+.|++=..||+-.++|
T Consensus 12 ivdvlPiIPv~f~lLafVWQAaV~Fr 37 (37)
T d2axtk1 12 LVDVLPVIPVLFLALAFVWQAAVGFR 37 (37)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhccHHHHHHHHHHHHHHHhccC
Confidence 45889999999999999999876653
No 6
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=8.33 E-value=71 Score=24.11 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=13.8
Q ss_pred hcccCChhHHHHHHHH
Q 021706 142 QGNYASGPEALARTFG 157 (309)
Q Consensus 142 ~Ghl~Sg~~si~rtl~ 157 (309)
.||.|+|||++...|.
T Consensus 11 iGhvd~GKSTL~~~L~ 26 (195)
T d1kk1a3 11 VGHVDHGKTTLTKALT 26 (195)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred EeccCCcHHHHHHHHH
Confidence 4999999999988774
No 7
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}
Probab=7.42 E-value=81 Score=24.58 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=14.4
Q ss_pred hhcccCChhHHHHHHHH
Q 021706 141 FQGNYASGPEALARTFG 157 (309)
Q Consensus 141 L~Ghl~Sg~~si~rtl~ 157 (309)
+.||.|+||++|...|+
T Consensus 8 iiGhvd~GKSTL~~~Ll 24 (204)
T d2c78a3 8 TIGHVDHGKTTLTAALT 24 (204)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EEeCCCCcHHHHHHHHH
Confidence 35999999999987775
No 8
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Probab=7.29 E-value=83 Score=26.19 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=16.0
Q ss_pred hhcccCChhHHHHHHHHHHH
Q 021706 141 FQGNYASGPEALARTFGISG 160 (309)
Q Consensus 141 L~Ghl~Sg~~si~rtl~iT~ 160 (309)
+.||.++||+++...++..+
T Consensus 7 iiGh~~~GKTtL~e~ll~~~ 26 (267)
T d2dy1a2 7 LVGHAGSGKTTLTEALLYKT 26 (267)
T ss_dssp EEESTTSSHHHHHHHHHHHT
T ss_pred EEcCCCCcHHHHHHHHHHHc
Confidence 45999999999988776533
No 9
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=7.25 E-value=87 Score=25.02 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=13.9
Q ss_pred hcccCChhHHHHHHHHH
Q 021706 142 QGNYASGPEALARTFGI 158 (309)
Q Consensus 142 ~Ghl~Sg~~si~rtl~i 158 (309)
.||.|+||+.+...|+.
T Consensus 15 iGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 15 CGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 49999999998776654
No 10
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=7.24 E-value=85 Score=23.98 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=14.1
Q ss_pred hhcccCChhHHHHHHHH
Q 021706 141 FQGNYASGPEALARTFG 157 (309)
Q Consensus 141 L~Ghl~Sg~~si~rtl~ 157 (309)
..||.|+|||.+...|+
T Consensus 13 iiGhVd~GKSTL~~~L~ 29 (205)
T d2qn6a3 13 VVGHVDHGKTTLVQAIT 29 (205)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EEEccCCcHHHHHHHHH
Confidence 45999999999887764
Done!