BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021707
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 183 bits (465), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 151/258 (58%), Gaps = 7/258 (2%)
Query: 30 LPSGGGDAE-NLQCILRLLTSYGVFS----EHREFRGERKYSLTEIGKSLVTDAEGLSYA 84
LP+ DA L +LRLL Y + + ++ + +R Y L + K LV + +G+S +
Sbjct: 66 LPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNEDGVSIS 125
Query: 85 PYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVS 144
L + M +W + +AVLD I PF K +G A+ Y+G P N + + +S S
Sbjct: 126 ALNLMNQDKVLMESWYHLKDAVLDGGI-PFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHS 184
Query: 145 VPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIP 204
M +L++Y GF+G+K LVDVGG G + I+ K+ I +GINFDLP V+ +APS P
Sbjct: 185 TITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTI-KGINFDLPHVIEDAPSYP 243
Query: 205 GVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264
GV H+GGDMF SIP A+A+FMKW+ W+D+ C ++NCY+AL GK+I E +L
Sbjct: 244 GVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVA 303
Query: 265 SNESQRTRALLEGDIFVM 282
+ S T+ ++ D+ ++
Sbjct: 304 PDSSLATKGVVHIDVIML 321
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 136/245 (55%), Gaps = 6/245 (2%)
Query: 43 ILRLLTSYGVFS----EHREFRGERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDAFMSA 98
ILRLL SY V + E ++ R R Y + K L + +G+S A L + M +
Sbjct: 81 ILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMES 140
Query: 99 WPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGF 158
W + +AVLD I PF K +G A+ Y+G P N + + S+ +L+ Y+GF
Sbjct: 141 WYYLKDAVLDGGI-PFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGF 199
Query: 159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIP 218
+G+ LVDVGG G + I H+ +G+NFDLP V+ EAP PGVTH+GGDMF +P
Sbjct: 200 EGLGTLVDVGGGVGATVAAI-AAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVP 258
Query: 219 AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGD 278
+ + I MKW+L W+D C +++NCY AL A GK++ + +L + + ++ + D
Sbjct: 259 SGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVD 318
Query: 279 IFVMT 283
+ ++
Sbjct: 319 MIMLA 323
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 167 bits (422), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 6/247 (2%)
Query: 40 LQCILRLLTSYGVFS-EHREF---RGERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDAF 95
L +LRLL SY V + RE + ER Y L + K L + +G+S AP++L
Sbjct: 80 LDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVL 139
Query: 96 MSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSY 155
+ W + +A+L+ I PF K +G + Y+G +N + + +S S M +L+ Y
Sbjct: 140 LEPWFYLKDAILEGGI-PFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMY 198
Query: 156 NGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFN 215
NGF+G+ +VDVGG G MI+ K+ I INFDLP V+ +AP+ GV H+GGDMF+
Sbjct: 199 NGFEGLTTIVDVGGGTGAVASMIVAKYPSI-NAINFDLPHVIQDAPAFSGVEHLGGDMFD 257
Query: 216 SIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALL 275
+P +AIF+KW+ W+D+ C +++NCY AL GK+I E +L + S T+ ++
Sbjct: 258 GVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVI 317
Query: 276 EGDIFVM 282
D ++
Sbjct: 318 HTDALML 324
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 144/260 (55%), Gaps = 7/260 (2%)
Query: 40 LQCILRLLTSYGVF-SEHREFR---GERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDAF 95
L +LRLL SY V S R ER Y L+ +GK LV D A + A
Sbjct: 85 LDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPAL 144
Query: 96 MSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSY 155
+ W EAV+D I+ F VHG Y + GK +MN + +++ V M +L+ Y
Sbjct: 145 LQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIY 204
Query: 156 NGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFN 215
GF+G+ LVDVGG +G L +I+ K+ I +GINFDLP+V+ AP + G+ H+GGDMF
Sbjct: 205 TGFEGISTLVDVGGGSGRNLELIISKYPLI-KGINFDLPQVIENAPPLSGIEHVGGDMFA 263
Query: 216 SIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTR--A 273
S+P +A+ +K V W+D++C + NC+KAL GK+I E +L ++ N S+ ++ +
Sbjct: 264 SVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVS 323
Query: 274 LLEGDIFVMTIYRAKDDNSF 293
L+ +F+ R + + +
Sbjct: 324 TLDNLMFITVGGRERTEKQY 343
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 150 bits (380), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 117/212 (55%), Gaps = 1/212 (0%)
Query: 61 GERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGE 120
ER Y L+ +GK LV D A + A + W EAV+D I+ F VHG
Sbjct: 110 AERVYGLSXVGKYLVPDESRGYLASFTTFLCYPALLQVWXNFKEAVVDEDIDLFKNVHGV 169
Query: 121 PAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQ 180
Y + GK + N + ++ V L+ Y GF+G+ LVDVGG +G L +I+
Sbjct: 170 TKYEFXGKDKKXNQIFNKSXVDVCATEXKRXLEIYTGFEGISTLVDVGGGSGRNLELIIS 229
Query: 181 KHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLI 240
K+ I +GINFDLP+V+ AP + G+ H+GGD F S+P +A +K V W+D++C
Sbjct: 230 KYPLI-KGINFDLPQVIENAPPLSGIEHVGGDXFASVPQGDAXILKAVCHNWSDEKCIEF 288
Query: 241 MENCYKALLAGGKLIACEPVLLDDSNESQRTR 272
+ NC+KAL GK+I E +L ++ N S+ ++
Sbjct: 289 LSNCHKALSPNGKVIIVEFILPEEPNTSEESK 320
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 143/288 (49%), Gaps = 11/288 (3%)
Query: 19 PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFS--EHREFRGERK-YSLTEIGKSLV 75
P+++S +++ IL +N+Q ++R L G F ++E E + Y+LT + LV
Sbjct: 51 PITLSNLVS-ILQIPSTKVDNVQRLMRYLAHNGFFEIITNQELENEEEAYALTVASELLV 109
Query: 76 TDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGL 135
E L AP V +++ + + V + + F G + + K PE N L
Sbjct: 110 KGTE-LCLAPMVECVLDPTLSTSFHNLKKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTL 168
Query: 136 MRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDLP 194
A++ S ++ D F+G++ +VDVGG G ++I + C + FD P
Sbjct: 169 YNDALASDSKMINLAMKDCNLVFEGLESIVDVGGGNGTTGKIICETFPKLTC--VVFDRP 226
Query: 195 EVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAG--- 251
+VV +T++GGDMF S+P A+A+ +K VL WTD +C I++ C +A+ +
Sbjct: 227 KVVENLCGSNNLTYVGGDMFISVPKADAVLLKAVLHDWTDKDCIKILKKCKEAVTSDGKR 286
Query: 252 GKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFYFFLFI 299
GK+I + V+ + +E+Q T+ L ++ + + + + + LFI
Sbjct: 287 GKVIVIDMVINEKKDENQLTQIKLLMNVTISCVNGKERNEEEWKKLFI 334
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 134/284 (47%), Gaps = 8/284 (2%)
Query: 19 PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDA 78
P+S+S +++ IL N++ ++R L G F + E Y+LT + L+
Sbjct: 51 PISLSNLVS-ILQVPSSKIGNVRRLMRYLAHNGFFEIIT--KEEESYALT-VASELLVRG 106
Query: 79 EGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRR 138
L AP V ++ + + + + + F G + + K PE N
Sbjct: 107 SDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFND 166
Query: 139 AISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVG 198
A++ S ++ D F G++ +VDVGG G ++I + + + I FD P+VV
Sbjct: 167 AMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKL-KCIVFDRPQVVE 225
Query: 199 EAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAG---GKLI 255
+T++GGDMF SIP A+A+ +K++L WTD +C I++ C +A+ GK+
Sbjct: 226 NLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVT 285
Query: 256 ACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFYFFLFI 299
+ V+ +E+Q T+ L D+ + + + + + LFI
Sbjct: 286 IIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFI 329
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 90.5 bits (223), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 123/264 (46%), Gaps = 8/264 (3%)
Query: 19 PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDA 78
P+S+S +++ IL N++ + R L G F + E Y+LT + L+
Sbjct: 51 PISLSNLVS-ILQVPSSKIGNVRRLXRYLAHNGFFEIIT--KEEESYALT-VASELLVRG 106
Query: 79 EGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRR 138
L AP V ++ + + + + + F G + + K PE N
Sbjct: 107 SDLCLAPXVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFND 166
Query: 139 AISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVG 198
A + S ++ D F G++ +VDVGG G ++I + + + I FD P+VV
Sbjct: 167 AXASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKL-KCIVFDRPQVVE 225
Query: 199 EAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAG---GKLI 255
+T++GGD F SIP A+A+ +K++L WTD +C I++ C +A+ GK+
Sbjct: 226 NLSGSNNLTYVGGDXFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVT 285
Query: 256 ACEPVLLDDSNESQRTRALLEGDI 279
+ V+ +E+Q T+ L D+
Sbjct: 286 IIDXVIDKKKDENQVTQIKLLXDV 309
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 95/177 (53%), Gaps = 8/177 (4%)
Query: 119 GEPAYSYYGKMPEMNGL--MRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLR 176
GE + + K E + L + A++ S F + ++ F+G++ LVDVGG G +
Sbjct: 150 GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTK 209
Query: 177 MILQKH-HFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDD 235
+I + H C FD P+VVG + +GGDMF SIP+A+A+ +KWVL W D+
Sbjct: 210 LIHEIFPHLKC--TVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDE 267
Query: 236 ECKLIMENCYKALL---AGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKD 289
+ I++N +A+ GK+I + + + S++ T L+ D+ ++T++ K+
Sbjct: 268 QSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKE 324
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 95/177 (53%), Gaps = 8/177 (4%)
Query: 119 GEPAYSYYGKMPEMNGL--MRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLR 176
GE + + K E + L + A++ S F + ++ F+G++ LVDVGG G +
Sbjct: 149 GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTK 208
Query: 177 MILQKH-HFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDD 235
+I + H C FD P+VVG + +GGDMF SIP+A+A+ +KWVL W D+
Sbjct: 209 LIHEIFPHLKC--TVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDE 266
Query: 236 ECKLIMENCYKALL---AGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKD 289
+ I++N +A+ GK+I + + + S++ T L+ D+ ++T++ K+
Sbjct: 267 QSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKE 323
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 95/177 (53%), Gaps = 8/177 (4%)
Query: 119 GEPAYSYYGKMPEMNGL--MRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLR 176
GE + + K E + L + A++ S F + ++ F+G++ LVDVGG G +
Sbjct: 146 GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTK 205
Query: 177 MILQKH-HFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDD 235
+I + H C FD P+VVG + +GGDMF SIP+A+A+ +KWVL W D+
Sbjct: 206 LIHEIFPHLKC--TVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDE 263
Query: 236 ECKLIMENCYKALL---AGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKD 289
+ I++N +A+ GK+I + + + S++ T L+ D+ ++T++ K+
Sbjct: 264 QSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKE 320
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 103/237 (43%), Gaps = 18/237 (7%)
Query: 40 LQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDAFMSAW 99
L+ +LRLL V E + +++LT+ G +L +D+ + A +L F W
Sbjct: 72 LRRVLRLLAVRDVVRE-----SDGRFALTDKGAALRSDSPVPARA-GILXFTDTXF---W 122
Query: 100 PLVHE--AVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNG 157
H + L P F + G +Y+ E+ L VS +L
Sbjct: 123 TXSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGXETVSAAEHL-ILARAGD 181
Query: 158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVG----EAPSIPGVTHI-GGD 212
F + DVGG G L +L++H + +G+ D EVV +AP + G + GD
Sbjct: 182 FPATGTVADVGGGRGGFLLTVLREHPGL-QGVLLDRAEVVARHRLDAPDVAGRWKVVEGD 240
Query: 213 MFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQ 269
+P A+ +K +L W D++ I+ NC + A G+++ + V+ + ++ Q
Sbjct: 241 FLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVXPAHGRVLVIDAVVPEGNDAHQ 297
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 112/239 (46%), Gaps = 26/239 (10%)
Query: 34 GGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKS-LVTDAEGLSYAPYVLQHHQ 92
G DAE + ++RLL ++ + F+G+ + S L+ D EG S+ VL + +
Sbjct: 52 GSDAERIHRLMRLLVAFEI------FQGDTRDGYANTPTSHLLRDVEG-SFRDMVLFYGE 104
Query: 93 DAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPF--MTS 150
+ F +AW EA+L T F GE YSY + P+ A+ ++ F +
Sbjct: 105 E-FHAAWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLLAMKASNLAFHEIPR 162
Query: 151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPS-----IPG 205
+LD F+G + VDVGG +G+ + ILQ G+ D +G A + G
Sbjct: 163 LLD----FRG-RSFVDVGGGSGELTKAILQAEPS-ARGVMLDREGSLGVARDNLSSLLAG 216
Query: 206 --VTHIGGDMFNSIPAANAIFMKWVLATWTDDECKL-IMENCYKALLAGGKLIACEPVL 261
V+ +GGDM +P+ I++ + D+ L ++ NC +A+ G+++ E +
Sbjct: 217 ERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTI 275
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 153 DSYNGFKGVKRLVDVGGSAGDCLRMI-LQKHHFICEGINFDLP-----EVVGEAPSIPGV 206
D+Y+ + V+ ++DVGG G L I L+ H + P +A V
Sbjct: 176 DAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRV 234
Query: 207 THIGGDMFNSIP-AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACE 258
T GD F +P A+ + + +VL W+D++ I+ C +AL GG+L+ +
Sbjct: 235 TVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLD 287
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Query: 147 FMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP---EVVGEAPSI 203
F +L GVK+++DVGG GD +L KH + +LP ++V E +
Sbjct: 177 FAIQLLLEEAKLDGVKKMIDVGGGIGDISAAML-KHFPELDSTILNLPGAIDLVNENAAE 235
Query: 204 PGVTH----IGGDMFN-SIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACE 258
GV I D++ S P A+A+ +L + + ++ + + A+ +GG+L+ +
Sbjct: 236 KGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 295
Query: 259 PVLLDDSN 266
V+ D N
Sbjct: 296 MVIDDPEN 303
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 164 LVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAP---SIPGVTHIG---GDMF-NS 216
+ D+GG AG + + + C+ FD+PEVV A S I GD F +
Sbjct: 183 MCDLGGGAGALAKECMSLYPG-CKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDP 241
Query: 217 IPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264
+P A+ + VL W D +C ++E Y GG ++ E +L +D
Sbjct: 242 LPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDED 289
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 206 VTHIGGDMFNSIP-AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACE 258
VT GD F +P A+ + + +VL W+D++ I+ C +AL GG+L+ +
Sbjct: 234 VTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLD 287
>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW2|B Chain B, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW3|A Chain A, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
pdb|1TW3|B Chain B, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
Length = 360
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 209 IGGDMFNSIP-AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNE 267
+ GD F +P A+AI + +VL W D + I+ C +AL GG+++ E DD +E
Sbjct: 238 VEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE---RDDLHE 294
Query: 268 SQRTRALLEGDIFVM 282
+ E D+ ++
Sbjct: 295 NSFNEQFTELDLRML 309
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 97/250 (38%), Gaps = 29/250 (11%)
Query: 24 QILTCILPSGGGDAENLQCILRLLTSYGVFSE--HREFRGERKYS---LTEIGKSLVTDA 78
+ T + + G + L+ +LRLL + GVF + H + + S L + + TDA
Sbjct: 72 RTATALAEATGAHEQTLRRLLRLLATVGVFDDLGHDDLFAQNALSAVLLPDPASPVATDA 131
Query: 79 EGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRR 138
AP+ AW + +V F +G + + P+ L R
Sbjct: 132 R-FQAAPW--------HWRAWEQLTHSVRTGEAS-FDVANGTSFWQLTHEDPKARELFNR 181
Query: 139 AISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVG 198
A VS+ V +Y+ F G VD+GG G +L + G + P V
Sbjct: 182 AXGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLXAAVLDAFPGL-RGTLLERPPVAE 239
Query: 199 EAPSIPGVTHIG---------GDMFNSIP-AANAIFMKWVLATWTDDECKLIMENCYKAL 248
EA + +T G GD F +IP A+ +K VL W DD+ I+ A
Sbjct: 240 EAREL--LTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAX 297
Query: 249 LAGGKLIACE 258
+L+ +
Sbjct: 298 KPDSRLLVID 307
>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I53|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I58|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I58|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I5U|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I5U|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I64|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
pdb|3I64|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
Length = 332
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 211 GDMFNSIPA-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264
G F+ +PA A + VL W D I+ C +A +GG ++ E V D+
Sbjct: 226 GSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE 280
>pdb|3H4I|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products
pdb|3H4T|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products - Gtfah1 In Complex With Udp-2f-Glc
Length = 404
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 98 AWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNG 157
AW L + L +E F++ P Y +G P R AI V VL S G
Sbjct: 200 AWILPDQRPLSAELEGFLRAGSPPVYVGFGSGPAPAEAARVAIEAVRAQGRRVVLSS--G 257
Query: 158 FKGVKRLVDVGGSAGDCLRMILQKHHFI 185
+ G+ R +D G DCL + H +
Sbjct: 258 WAGLGR-IDEG---DDCLVVGEVNHQVL 281
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,847,211
Number of Sequences: 62578
Number of extensions: 412295
Number of successful extensions: 838
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 799
Number of HSP's gapped (non-prelim): 22
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)