Query 021707
Match_columns 309
No_of_seqs 145 out of 1621
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:03:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00891 Methyltransf_2: O-met 100.0 9.4E-43 2E-47 309.5 15.5 229 62-295 3-234 (241)
2 KOG3178 Hydroxyindole-O-methyl 100.0 7.8E-41 1.7E-45 301.5 18.6 287 3-296 24-313 (342)
3 TIGR02716 C20_methyl_CrtF C-20 100.0 7.7E-36 1.7E-40 274.1 19.3 242 4-265 9-261 (306)
4 COG2226 UbiE Methylase involve 99.6 2.9E-15 6.3E-20 131.4 11.2 114 149-266 41-164 (238)
5 PRK06922 hypothetical protein; 99.6 5.1E-15 1.1E-19 145.0 12.5 144 120-265 377-544 (677)
6 PRK15451 tRNA cmo(5)U34 methyl 99.6 1.1E-14 2.4E-19 129.8 12.5 107 159-266 55-172 (247)
7 PF12847 Methyltransf_18: Meth 99.6 4.1E-15 8.9E-20 115.9 8.0 97 161-258 2-111 (112)
8 TIGR00740 methyltransferase, p 99.6 2.1E-14 4.4E-19 127.4 10.1 106 159-265 52-168 (239)
9 PF01209 Ubie_methyltran: ubiE 99.5 6.4E-15 1.4E-19 129.9 6.2 112 149-264 37-159 (233)
10 PRK14103 trans-aconitate 2-met 99.5 7.3E-14 1.6E-18 125.1 12.2 106 148-258 18-126 (255)
11 PLN02233 ubiquinone biosynthes 99.5 2.2E-13 4.7E-18 122.5 13.0 104 158-264 71-188 (261)
12 PRK11207 tellurite resistance 99.5 2.3E-13 4.9E-18 117.3 10.7 112 148-263 19-139 (197)
13 PTZ00098 phosphoethanolamine N 99.5 3E-13 6.5E-18 121.7 11.9 114 148-264 41-162 (263)
14 smart00138 MeTrc Methyltransfe 99.5 2.7E-12 5.9E-17 115.5 16.2 102 158-260 97-244 (264)
15 PRK01683 trans-aconitate 2-met 99.4 8.8E-13 1.9E-17 118.2 11.5 106 148-257 20-129 (258)
16 TIGR02752 MenG_heptapren 2-hep 99.4 1.6E-12 3.4E-17 114.6 12.4 111 149-263 35-156 (231)
17 KOG1540 Ubiquinone biosynthesi 99.4 1.2E-12 2.6E-17 113.6 11.1 110 151-264 92-220 (296)
18 PF13847 Methyltransf_31: Meth 99.4 3.5E-13 7.6E-18 111.1 7.4 97 160-260 3-112 (152)
19 PF08241 Methyltransf_11: Meth 99.4 4.8E-13 1E-17 100.3 6.7 88 165-256 1-95 (95)
20 PF08242 Methyltransf_12: Meth 99.4 8.4E-14 1.8E-18 106.3 2.3 87 165-254 1-99 (99)
21 TIGR03587 Pse_Me-ase pseudamin 99.4 2.9E-12 6.3E-17 110.9 11.3 103 158-263 41-147 (204)
22 PLN02244 tocopherol O-methyltr 99.4 2.3E-12 5E-17 120.1 11.2 99 159-261 117-226 (340)
23 TIGR00477 tehB tellurite resis 99.4 2.6E-12 5.7E-17 110.5 10.4 109 149-261 20-136 (195)
24 COG4106 Tam Trans-aconitate me 99.4 3.5E-12 7.7E-17 108.2 9.3 120 136-260 8-131 (257)
25 PLN02490 MPBQ/MSBQ methyltrans 99.3 4.7E-12 1E-16 117.2 10.7 109 151-263 104-220 (340)
26 smart00828 PKS_MT Methyltransf 99.3 5.3E-12 1.2E-16 110.7 9.7 96 163-261 2-107 (224)
27 PF13649 Methyltransf_25: Meth 99.3 1.9E-12 4.1E-17 99.3 5.7 88 164-252 1-101 (101)
28 PLN02336 phosphoethanolamine N 99.3 9.5E-12 2.1E-16 121.1 11.6 110 149-263 256-374 (475)
29 PRK12335 tellurite resistance 99.3 1.7E-11 3.7E-16 111.7 10.5 109 150-262 111-227 (287)
30 PRK08317 hypothetical protein; 99.3 2.6E-11 5.7E-16 106.5 11.3 108 150-261 10-127 (241)
31 PRK11036 putative S-adenosyl-L 99.3 2E-11 4.4E-16 109.3 10.1 102 151-259 37-150 (255)
32 PRK15068 tRNA mo(5)U34 methylt 99.3 2.5E-11 5.5E-16 112.2 10.9 111 149-264 112-232 (322)
33 PLN02336 phosphoethanolamine N 99.3 3.4E-11 7.5E-16 117.2 12.2 113 148-264 26-148 (475)
34 PLN03075 nicotianamine synthas 99.3 2.1E-11 4.5E-16 110.3 9.8 98 159-258 122-233 (296)
35 PRK10258 biotin biosynthesis p 99.3 5.4E-11 1.2E-15 106.2 12.5 108 148-261 31-143 (251)
36 PRK00216 ubiE ubiquinone/menaq 99.3 4.9E-11 1.1E-15 105.0 11.8 112 149-264 41-164 (239)
37 PRK15001 SAM-dependent 23S rib 99.3 3.3E-11 7.2E-16 113.0 10.9 108 149-258 218-340 (378)
38 TIGR00452 methyltransferase, p 99.3 4.3E-11 9.4E-16 109.8 11.2 111 149-264 111-231 (314)
39 PRK06202 hypothetical protein; 99.2 6.9E-11 1.5E-15 104.4 12.0 101 159-262 59-170 (232)
40 PLN02396 hexaprenyldihydroxybe 99.2 1.8E-11 3.9E-16 112.8 8.5 96 160-260 131-237 (322)
41 TIGR02072 BioC biotin biosynth 99.2 3.9E-11 8.4E-16 105.6 10.1 100 160-262 34-139 (240)
42 PF05401 NodS: Nodulation prot 99.2 1.3E-11 2.9E-16 104.1 6.4 102 154-259 38-147 (201)
43 PRK08287 cobalt-precorrin-6Y C 99.2 4.6E-11 9.9E-16 102.0 9.6 103 151-260 23-133 (187)
44 PRK11873 arsM arsenite S-adeno 99.2 4.8E-11 1E-15 107.8 9.8 103 158-263 75-188 (272)
45 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 1.2E-10 2.6E-15 101.4 10.8 112 149-264 29-149 (223)
46 PF02353 CMAS: Mycolic acid cy 99.2 5E-11 1.1E-15 107.5 8.0 114 148-264 51-172 (273)
47 PF13489 Methyltransf_23: Meth 99.2 8.9E-11 1.9E-15 96.9 8.8 97 158-263 20-120 (161)
48 COG2230 Cfa Cyclopropane fatty 99.2 1.4E-10 3E-15 103.8 10.6 115 148-265 61-183 (283)
49 TIGR02469 CbiT precorrin-6Y C5 99.2 1.3E-10 2.8E-15 91.7 9.3 100 151-257 11-121 (124)
50 TIGR02021 BchM-ChlM magnesium 99.2 2.3E-10 4.9E-15 100.1 11.5 123 130-255 24-155 (219)
51 PRK11705 cyclopropane fatty ac 99.2 1.9E-10 4E-15 108.8 11.3 111 150-263 158-272 (383)
52 PF05175 MTS: Methyltransferas 99.2 7.6E-11 1.7E-15 99.2 7.6 98 160-258 31-140 (170)
53 PRK09489 rsmC 16S ribosomal RN 99.2 2E-10 4.3E-15 106.9 11.0 109 150-260 187-305 (342)
54 PRK05785 hypothetical protein; 99.2 1.4E-10 3.1E-15 102.0 9.5 97 160-264 51-151 (226)
55 TIGR03840 TMPT_Se_Te thiopurin 99.2 4.9E-10 1.1E-14 97.6 12.5 101 159-262 33-156 (213)
56 TIGR00138 gidB 16S rRNA methyl 99.2 8.1E-11 1.8E-15 100.0 7.2 91 161-258 43-142 (181)
57 TIGR03438 probable methyltrans 99.1 1.8E-10 3.9E-15 105.7 9.7 98 160-258 63-177 (301)
58 PRK00107 gidB 16S rRNA methylt 99.1 1.7E-10 3.6E-15 98.5 8.7 94 160-260 45-147 (187)
59 KOG1270 Methyltransferases [Co 99.1 6.5E-11 1.4E-15 103.5 5.6 97 161-262 90-199 (282)
60 PF03848 TehB: Tellurite resis 99.1 2.5E-10 5.4E-15 97.2 8.1 108 149-260 20-135 (192)
61 TIGR00537 hemK_rel_arch HemK-r 99.1 5.2E-10 1.1E-14 94.8 8.8 100 160-262 19-144 (179)
62 COG2227 UbiG 2-polyprenyl-3-me 99.1 2E-10 4.4E-15 99.6 6.3 99 160-263 59-166 (243)
63 PRK00121 trmB tRNA (guanine-N( 99.1 4.5E-10 9.7E-15 97.2 8.4 105 151-258 33-156 (202)
64 PRK13255 thiopurine S-methyltr 99.1 1.3E-09 2.9E-14 95.2 11.4 102 158-262 35-159 (218)
65 PRK04266 fibrillarin; Provisio 99.1 1.7E-09 3.6E-14 95.1 11.9 96 154-256 67-174 (226)
66 TIGR00091 tRNA (guanine-N(7)-) 99.0 3.6E-10 7.8E-15 97.1 6.9 97 160-258 16-132 (194)
67 COG2813 RsmC 16S RNA G1207 met 99.0 1.8E-09 3.8E-14 97.1 11.0 110 148-259 147-267 (300)
68 PRK13944 protein-L-isoaspartat 99.0 1.5E-09 3.3E-14 94.1 9.2 99 149-257 62-172 (205)
69 COG2242 CobL Precorrin-6B meth 99.0 2E-09 4.4E-14 90.2 9.3 104 151-262 26-139 (187)
70 PRK07580 Mg-protoporphyrin IX 99.0 2.8E-09 6E-14 93.6 10.4 90 159-252 62-160 (230)
71 PRK13942 protein-L-isoaspartat 99.0 2.6E-09 5.6E-14 93.1 9.6 100 148-257 65-175 (212)
72 TIGR03533 L3_gln_methyl protei 99.0 2.1E-09 4.6E-14 97.8 9.4 96 160-256 121-249 (284)
73 PRK07402 precorrin-6B methylas 99.0 2.4E-09 5.3E-14 92.0 9.2 103 151-261 32-145 (196)
74 PRK11188 rrmJ 23S rRNA methylt 99.0 7.7E-09 1.7E-13 89.9 11.9 103 151-258 42-165 (209)
75 PRK14121 tRNA (guanine-N(7)-)- 98.9 4.3E-09 9.4E-14 98.6 10.0 105 150-257 113-234 (390)
76 TIGR00080 pimt protein-L-isoas 98.9 4.4E-09 9.6E-14 91.8 9.4 99 149-257 67-176 (215)
77 TIGR03534 RF_mod_PrmC protein- 98.9 4E-09 8.6E-14 93.8 9.1 97 160-257 87-216 (251)
78 PRK11805 N5-glutamine S-adenos 98.9 3.4E-09 7.4E-14 97.4 8.9 94 162-256 135-261 (307)
79 PRK04457 spermidine synthase; 98.9 2.3E-09 5.1E-14 96.3 7.5 97 160-257 66-176 (262)
80 PRK11088 rrmA 23S rRNA methylt 98.9 2.6E-09 5.6E-14 96.6 7.7 90 160-259 85-182 (272)
81 TIGR00536 hemK_fam HemK family 98.9 8E-09 1.7E-13 94.0 10.2 94 162-256 116-242 (284)
82 cd02440 AdoMet_MTases S-adenos 98.9 1.4E-08 3E-13 76.1 8.7 92 163-257 1-103 (107)
83 PLN02585 magnesium protoporphy 98.8 9.9E-09 2.1E-13 94.4 8.6 92 160-255 144-247 (315)
84 PRK09328 N5-glutamine S-adenos 98.8 2.1E-08 4.5E-13 90.6 10.5 98 158-256 106-236 (275)
85 COG4123 Predicted O-methyltran 98.8 9.7E-09 2.1E-13 90.5 7.6 107 151-258 35-170 (248)
86 PRK00377 cbiT cobalt-precorrin 98.8 2.2E-08 4.8E-13 86.2 9.4 98 152-256 33-143 (198)
87 PF05891 Methyltransf_PK: AdoM 98.8 7.3E-09 1.6E-13 89.0 6.2 103 160-264 55-167 (218)
88 TIGR00438 rrmJ cell division p 98.8 4.9E-08 1.1E-12 83.3 11.1 102 151-257 23-145 (188)
89 PF08003 Methyltransf_9: Prote 98.8 5.3E-08 1.2E-12 87.6 11.5 112 148-265 104-226 (315)
90 PF13659 Methyltransf_26: Meth 98.8 5.3E-09 1.1E-13 81.9 4.3 94 162-257 2-114 (117)
91 PRK05134 bifunctional 3-demeth 98.8 3.8E-08 8.3E-13 86.7 9.4 95 160-259 48-152 (233)
92 KOG2361 Predicted methyltransf 98.8 1.2E-08 2.5E-13 88.4 5.7 100 162-262 73-187 (264)
93 PRK13256 thiopurine S-methyltr 98.8 1.1E-07 2.5E-12 83.1 11.9 102 158-262 41-167 (226)
94 KOG4300 Predicted methyltransf 98.8 2E-08 4.4E-13 84.9 6.8 101 161-265 77-189 (252)
95 PF01739 CheR: CheR methyltran 98.7 3.8E-08 8.2E-13 84.5 8.4 100 160-260 31-177 (196)
96 PRK14967 putative methyltransf 98.7 5.2E-08 1.1E-12 85.5 9.3 102 158-261 34-162 (223)
97 TIGR01983 UbiG ubiquinone bios 98.7 3.4E-08 7.5E-13 86.3 8.2 96 160-260 45-151 (224)
98 PTZ00146 fibrillarin; Provisio 98.7 1.4E-07 3E-12 85.3 12.1 95 158-257 130-236 (293)
99 TIGR03704 PrmC_rel_meth putati 98.7 5.6E-08 1.2E-12 86.9 9.4 96 161-257 87-215 (251)
100 PRK00312 pcm protein-L-isoaspa 98.7 6.7E-08 1.5E-12 84.1 9.6 97 150-258 69-175 (212)
101 PRK14968 putative methyltransf 98.7 7.5E-08 1.6E-12 81.6 9.5 99 159-260 22-150 (188)
102 TIGR00406 prmA ribosomal prote 98.7 4.5E-08 9.7E-13 89.3 8.2 96 160-262 159-263 (288)
103 KOG2899 Predicted methyltransf 98.7 5.7E-08 1.2E-12 84.1 8.0 109 148-257 45-208 (288)
104 TIGR02081 metW methionine bios 98.7 5.7E-08 1.2E-12 83.3 7.9 86 160-250 13-104 (194)
105 PRK01544 bifunctional N5-gluta 98.7 5.8E-08 1.3E-12 95.1 8.6 95 161-256 139-267 (506)
106 PRK00517 prmA ribosomal protei 98.7 6.8E-08 1.5E-12 86.3 8.4 93 159-263 118-218 (250)
107 PRK14966 unknown domain/N5-glu 98.7 6.8E-08 1.5E-12 91.3 8.7 99 160-260 251-382 (423)
108 PF06080 DUF938: Protein of un 98.7 2E-07 4.4E-12 79.8 10.8 106 158-264 22-147 (204)
109 PRK00811 spermidine synthase; 98.6 7.8E-08 1.7E-12 87.5 7.9 98 159-257 75-190 (283)
110 KOG3010 Methyltransferase [Gen 98.6 1.5E-07 3.2E-12 81.6 8.4 91 161-257 34-136 (261)
111 PHA03411 putative methyltransf 98.6 1.6E-07 3.4E-12 84.1 8.7 96 161-257 65-182 (279)
112 PF12147 Methyltransf_20: Puta 98.6 9.6E-07 2.1E-11 78.9 13.1 100 159-259 134-250 (311)
113 PRK13943 protein-L-isoaspartat 98.6 1.6E-07 3.5E-12 86.7 8.5 101 149-259 70-181 (322)
114 PRK10611 chemotaxis methyltran 98.6 2.9E-07 6.3E-12 83.5 9.5 97 161-258 116-262 (287)
115 COG2518 Pcm Protein-L-isoaspar 98.6 4.1E-07 8.9E-12 78.0 9.4 100 148-259 61-170 (209)
116 PLN02366 spermidine synthase 98.6 2.3E-07 5E-12 85.1 8.4 100 158-258 89-206 (308)
117 PLN02781 Probable caffeoyl-CoA 98.5 6.2E-07 1.4E-11 79.3 10.5 99 158-262 66-182 (234)
118 PRK01581 speE spermidine synth 98.5 2.5E-07 5.5E-12 85.8 8.1 100 158-258 148-268 (374)
119 PF01135 PCMT: Protein-L-isoas 98.5 9.2E-08 2E-12 83.0 4.9 103 147-259 60-173 (209)
120 PF05724 TPMT: Thiopurine S-me 98.5 1.9E-07 4E-12 81.7 6.5 102 158-262 35-159 (218)
121 COG2890 HemK Methylase of poly 98.5 3E-07 6.5E-12 83.4 8.0 99 163-263 113-242 (280)
122 COG1352 CheR Methylase of chem 98.5 1.6E-06 3.4E-11 77.8 12.1 99 160-259 96-242 (268)
123 TIGR00417 speE spermidine synt 98.5 2.8E-07 6E-12 83.3 7.3 98 159-257 71-185 (270)
124 PF07021 MetW: Methionine bios 98.5 4.2E-07 9E-12 76.9 7.4 83 159-247 12-101 (193)
125 TIGR01177 conserved hypothetic 98.5 1.1E-06 2.5E-11 81.6 10.6 105 151-259 174-295 (329)
126 PRK03612 spermidine synthase; 98.5 5E-07 1.1E-11 88.9 8.4 98 159-258 296-415 (521)
127 PF02390 Methyltransf_4: Putat 98.5 2.5E-07 5.4E-12 79.5 5.5 94 162-257 19-132 (195)
128 smart00650 rADc Ribosomal RNA 98.4 6.3E-07 1.4E-11 75.2 7.6 102 149-259 3-114 (169)
129 PF05148 Methyltransf_8: Hypot 98.4 9.6E-07 2.1E-11 75.5 8.6 125 125-264 33-164 (219)
130 PRK10901 16S rRNA methyltransf 98.4 1.3E-06 2.9E-11 84.0 10.4 111 151-263 236-377 (427)
131 PLN02232 ubiquinone biosynthes 98.4 3.8E-07 8.2E-12 75.9 5.6 74 189-264 1-87 (160)
132 PRK14904 16S rRNA methyltransf 98.4 1.8E-06 3.8E-11 83.6 11.0 106 158-264 248-383 (445)
133 PRK14902 16S rRNA methyltransf 98.4 1.5E-06 3.3E-11 84.1 10.1 108 152-261 243-382 (444)
134 TIGR00563 rsmB ribosomal RNA s 98.4 1.2E-06 2.5E-11 84.4 9.2 114 151-266 230-376 (426)
135 PF03291 Pox_MCEL: mRNA cappin 98.4 8.1E-07 1.7E-11 82.3 7.4 117 133-258 38-186 (331)
136 PF08123 DOT1: Histone methyla 98.3 1.6E-06 3.6E-11 74.9 7.4 112 149-265 32-165 (205)
137 COG2264 PrmA Ribosomal protein 98.3 2.5E-06 5.4E-11 77.3 8.8 96 159-261 161-266 (300)
138 PHA03412 putative methyltransf 98.3 3E-06 6.5E-11 74.3 8.5 95 161-257 50-161 (241)
139 PRK14901 16S rRNA methyltransf 98.3 3.5E-06 7.7E-11 81.2 9.8 110 152-263 245-389 (434)
140 KOG1975 mRNA cap methyltransfe 98.3 2.1E-06 4.5E-11 77.5 7.3 103 151-257 110-236 (389)
141 KOG1271 Methyltransferases [Ge 98.3 1E-06 2.2E-11 73.4 4.9 103 161-264 68-187 (227)
142 TIGR00446 nop2p NOL1/NOP2/sun 98.3 6.3E-06 1.4E-10 74.3 9.9 105 158-263 69-204 (264)
143 PRK14903 16S rRNA methyltransf 98.3 5.6E-06 1.2E-10 79.7 10.1 110 153-264 231-372 (431)
144 COG2519 GCD14 tRNA(1-methylade 98.2 1E-05 2.2E-10 71.1 10.6 117 138-263 69-200 (256)
145 PF06325 PrmA: Ribosomal prote 98.2 2E-06 4.4E-11 78.3 6.0 94 160-263 161-264 (295)
146 PLN02672 methionine S-methyltr 98.2 5.3E-06 1.1E-10 86.9 9.7 98 161-260 119-279 (1082)
147 COG0220 Predicted S-adenosylme 98.2 3.4E-06 7.3E-11 74.0 7.0 95 161-257 49-163 (227)
148 COG4976 Predicted methyltransf 98.2 1.1E-06 2.5E-11 75.6 2.9 110 150-265 116-232 (287)
149 COG3963 Phospholipid N-methylt 98.2 1.3E-05 2.8E-10 65.9 8.8 111 148-260 37-158 (194)
150 PF05219 DREV: DREV methyltran 98.1 9.2E-06 2E-10 71.7 7.9 96 160-262 94-191 (265)
151 PF10294 Methyltransf_16: Puta 98.1 8.4E-06 1.8E-10 68.7 6.9 102 158-262 43-160 (173)
152 PF09243 Rsm22: Mitochondrial 98.1 1.3E-05 2.8E-10 72.6 8.4 102 160-264 33-145 (274)
153 TIGR00755 ksgA dimethyladenosi 98.1 1.4E-05 3E-10 71.5 8.3 91 148-246 18-116 (253)
154 PRK14896 ksgA 16S ribosomal RN 98.1 1.4E-05 3.1E-10 71.6 8.4 81 148-233 18-104 (258)
155 KOG2904 Predicted methyltransf 98.1 2.2E-05 4.7E-10 69.5 8.9 100 157-257 145-284 (328)
156 PRK10909 rsmD 16S rRNA m(2)G96 98.1 7.6E-06 1.6E-10 70.5 6.0 93 160-257 53-158 (199)
157 PRK00274 ksgA 16S ribosomal RN 98.1 1.1E-05 2.4E-10 72.9 7.3 82 148-233 31-118 (272)
158 KOG3045 Predicted RNA methylas 98.1 3.4E-05 7.3E-10 67.8 9.8 122 125-263 141-269 (325)
159 PF04672 Methyltransf_19: S-ad 98.0 1.2E-05 2.6E-10 71.7 6.5 104 160-264 68-196 (267)
160 PRK13168 rumA 23S rRNA m(5)U19 98.0 1.1E-05 2.5E-10 77.9 6.4 100 148-257 286-399 (443)
161 PLN02476 O-methyltransferase 98.0 2.1E-05 4.6E-10 70.9 7.4 100 158-263 116-233 (278)
162 PLN02823 spermine synthase 98.0 2.3E-05 4.9E-10 72.8 7.6 97 159-257 102-219 (336)
163 PF05185 PRMT5: PRMT5 arginine 97.9 1.7E-05 3.8E-10 76.4 6.8 126 122-255 152-294 (448)
164 PF01596 Methyltransf_3: O-met 97.9 5.3E-06 1.1E-10 71.8 2.8 99 159-263 44-160 (205)
165 PRK04148 hypothetical protein; 97.9 7.3E-05 1.6E-09 59.9 8.9 98 151-260 8-111 (134)
166 KOG1541 Predicted protein carb 97.9 1.6E-05 3.4E-10 68.3 5.2 111 148-264 37-164 (270)
167 COG0421 SpeE Spermidine syntha 97.9 3.3E-05 7.2E-10 69.9 7.4 98 158-257 74-189 (282)
168 KOG1661 Protein-L-isoaspartate 97.9 2.7E-05 5.8E-10 66.4 6.1 99 150-257 71-192 (237)
169 PF08704 GCD14: tRNA methyltra 97.9 3.5E-05 7.7E-10 68.4 7.1 120 135-263 12-151 (247)
170 PTZ00338 dimethyladenosine tra 97.9 4.1E-05 9E-10 69.9 7.8 89 148-241 25-122 (294)
171 TIGR03439 methyl_EasF probable 97.9 0.00011 2.4E-09 67.8 10.3 105 149-257 68-196 (319)
172 PRK15128 23S rRNA m(5)C1962 me 97.8 4.7E-05 1E-09 72.4 7.1 98 159-258 219-339 (396)
173 COG5459 Predicted rRNA methyla 97.8 1.4E-05 3E-10 73.0 3.2 103 161-263 114-230 (484)
174 PRK11783 rlmL 23S rRNA m(2)G24 97.8 4.4E-05 9.5E-10 77.9 6.9 96 160-257 538-655 (702)
175 PRK01544 bifunctional N5-gluta 97.8 5.5E-05 1.2E-09 74.3 7.3 96 160-257 347-461 (506)
176 TIGR00478 tly hemolysin TlyA f 97.7 0.00023 4.9E-09 62.6 9.8 96 149-258 64-172 (228)
177 COG4122 Predicted O-methyltran 97.7 8.9E-05 1.9E-09 64.5 7.2 99 158-262 57-170 (219)
178 COG2263 Predicted RNA methylas 97.7 6E-05 1.3E-09 63.5 5.6 67 161-229 46-118 (198)
179 KOG1500 Protein arginine N-met 97.7 0.00011 2.4E-09 66.9 7.7 90 161-255 178-279 (517)
180 PRK03522 rumB 23S rRNA methylu 97.7 6.5E-05 1.4E-09 69.4 6.4 64 160-226 173-247 (315)
181 KOG1331 Predicted methyltransf 97.7 0.00014 3E-09 65.0 8.0 104 150-258 35-143 (293)
182 PF03141 Methyltransf_29: Puta 97.7 2.9E-05 6.2E-10 74.3 4.0 97 160-262 117-223 (506)
183 PF01564 Spermine_synth: Sperm 97.7 2.9E-05 6.3E-10 69.2 3.4 99 159-258 75-191 (246)
184 PRK00536 speE spermidine synth 97.7 0.00015 3.2E-09 65.0 7.9 90 158-258 70-171 (262)
185 PLN02589 caffeoyl-CoA O-methyl 97.6 0.00013 2.8E-09 65.0 6.1 99 158-262 77-194 (247)
186 TIGR00479 rumA 23S rRNA (uraci 97.6 6.4E-05 1.4E-09 72.5 4.2 97 150-256 283-394 (431)
187 TIGR00095 RNA methyltransferas 97.5 0.00011 2.4E-09 62.8 4.5 95 161-261 50-161 (189)
188 PRK11727 23S rRNA mA1618 methy 97.5 0.00025 5.5E-09 65.4 6.3 104 160-264 114-253 (321)
189 PRK00050 16S rRNA m(4)C1402 me 97.5 0.00023 5E-09 64.9 5.9 66 148-215 8-79 (296)
190 KOG3115 Methyltransferase-like 97.4 0.00014 3E-09 61.8 3.9 99 161-260 61-185 (249)
191 TIGR02085 meth_trns_rumB 23S r 97.4 0.0002 4.3E-09 67.8 5.2 89 161-257 234-333 (374)
192 KOG1499 Protein arginine N-met 97.4 0.00024 5.2E-09 65.2 5.6 94 160-255 60-164 (346)
193 COG4262 Predicted spermidine s 97.2 0.0007 1.5E-08 62.4 6.3 95 159-259 288-408 (508)
194 PF02527 GidB: rRNA small subu 97.2 0.00026 5.7E-09 60.1 2.7 90 163-259 51-149 (184)
195 COG4076 Predicted RNA methylas 97.1 0.0011 2.3E-08 55.9 5.8 97 162-261 34-138 (252)
196 KOG0820 Ribosomal RNA adenine 97.1 0.0011 2.5E-08 58.8 6.3 74 148-225 47-129 (315)
197 PF08100 Dimerisation: Dimeris 97.1 0.00023 5E-09 47.2 1.1 45 4-48 5-51 (51)
198 COG0030 KsgA Dimethyladenosine 97.1 0.0032 7E-08 56.2 8.7 84 148-235 19-110 (259)
199 PF04816 DUF633: Family of unk 97.0 0.001 2.2E-08 57.6 4.7 81 164-249 1-92 (205)
200 COG0500 SmtA SAM-dependent met 96.9 0.0066 1.4E-07 47.7 8.9 96 164-264 52-161 (257)
201 KOG3191 Predicted N6-DNA-methy 96.9 0.003 6.5E-08 52.9 6.2 101 161-262 44-172 (209)
202 PF02475 Met_10: Met-10+ like- 96.8 0.0006 1.3E-08 58.7 2.1 90 158-254 99-198 (200)
203 PF00398 RrnaAD: Ribosomal RNA 96.8 0.0021 4.6E-08 57.8 5.6 95 148-250 19-123 (262)
204 PRK11933 yebU rRNA (cytosine-C 96.8 0.0067 1.5E-07 59.0 9.1 102 158-260 111-243 (470)
205 PF13679 Methyltransf_32: Meth 96.8 0.0026 5.6E-08 51.6 5.4 76 159-235 24-115 (141)
206 COG0357 GidB Predicted S-adeno 96.8 0.0024 5.2E-08 55.5 5.3 95 161-262 68-172 (215)
207 PF01728 FtsJ: FtsJ-like methy 96.8 0.00099 2.1E-08 56.3 2.9 107 149-260 10-141 (181)
208 PRK04338 N(2),N(2)-dimethylgua 96.8 0.0023 4.9E-08 60.7 5.5 90 161-257 58-157 (382)
209 COG0293 FtsJ 23S rRNA methylas 96.7 0.013 2.9E-07 50.4 9.0 108 148-260 33-161 (205)
210 smart00550 Zalpha Z-DNA-bindin 96.6 0.0041 8.9E-08 43.9 4.8 59 5-69 6-66 (68)
211 KOG2940 Predicted methyltransf 96.6 0.0042 9.2E-08 54.0 5.3 91 161-255 73-171 (325)
212 PF01978 TrmB: Sugar-specific 96.5 0.0016 3.4E-08 45.9 2.0 47 7-57 10-56 (68)
213 smart00346 HTH_ICLR helix_turn 96.5 0.0052 1.1E-07 45.5 5.0 56 9-71 9-65 (91)
214 COG2521 Predicted archaeal met 96.5 0.0039 8.4E-08 54.3 4.6 94 158-258 132-245 (287)
215 PF07942 N2227: N2227-like pro 96.5 0.014 3.1E-07 52.5 8.4 97 160-261 56-205 (270)
216 TIGR01444 fkbM_fam methyltrans 96.5 0.0032 6.8E-08 50.8 3.9 51 163-214 1-58 (143)
217 KOG3420 Predicted RNA methylas 96.5 0.003 6.6E-08 51.0 3.5 76 151-229 40-124 (185)
218 PF09445 Methyltransf_15: RNA 96.5 0.00083 1.8E-08 55.8 0.3 62 162-226 1-76 (163)
219 PRK11760 putative 23S rRNA C24 96.4 0.0088 1.9E-07 55.4 7.0 97 159-264 210-310 (357)
220 PF11968 DUF3321: Putative met 96.3 0.01 2.2E-07 51.3 5.8 89 162-262 53-153 (219)
221 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.2 0.0027 5.8E-08 56.7 1.9 99 160-260 56-201 (256)
222 PF11312 DUF3115: Protein of u 96.1 0.016 3.4E-07 52.9 6.5 98 161-259 87-243 (315)
223 COG3897 Predicted methyltransf 96.0 0.041 9E-07 46.8 8.3 102 157-263 76-184 (218)
224 PF02082 Rrf2: Transcriptional 96.0 0.011 2.4E-07 43.3 4.5 48 18-71 24-71 (83)
225 TIGR02143 trmA_only tRNA (urac 96.0 0.0058 1.3E-07 57.4 3.6 51 162-215 199-256 (353)
226 PRK11783 rlmL 23S rRNA m(2)G24 96.0 0.035 7.5E-07 57.0 9.5 110 148-259 178-348 (702)
227 PF09339 HTH_IclR: IclR helix- 96.0 0.0077 1.7E-07 40.0 3.0 43 10-56 8-51 (52)
228 cd00092 HTH_CRP helix_turn_hel 95.9 0.018 3.8E-07 39.9 4.8 46 16-69 22-67 (67)
229 smart00419 HTH_CRP helix_turn_ 95.9 0.019 4.1E-07 36.9 4.6 41 19-68 8-48 (48)
230 PF01269 Fibrillarin: Fibrilla 95.9 0.051 1.1E-06 47.3 8.3 96 158-258 71-178 (229)
231 TIGR00027 mthyl_TIGR00027 meth 95.9 0.027 5.9E-07 50.6 7.0 100 160-262 81-200 (260)
232 PF02384 N6_Mtase: N-6 DNA Met 95.8 0.02 4.4E-07 52.5 6.2 98 158-257 44-182 (311)
233 PF13463 HTH_27: Winged helix 95.8 0.012 2.7E-07 41.0 3.6 52 16-71 15-68 (68)
234 PF14947 HTH_45: Winged helix- 95.8 0.014 3E-07 42.2 4.0 52 16-76 16-67 (77)
235 COG1889 NOP1 Fibrillarin-like 95.8 0.12 2.5E-06 44.3 10.0 113 149-266 63-188 (231)
236 PF03602 Cons_hypoth95: Conser 95.8 0.0073 1.6E-07 51.3 2.7 98 160-262 42-156 (183)
237 COG4798 Predicted methyltransf 95.7 0.051 1.1E-06 46.2 7.6 105 158-264 46-172 (238)
238 PRK05031 tRNA (uracil-5-)-meth 95.7 0.0085 1.8E-07 56.5 3.2 51 162-215 208-265 (362)
239 KOG4589 Cell division protein 95.7 0.066 1.4E-06 45.3 7.9 99 153-256 62-182 (232)
240 PF12840 HTH_20: Helix-turn-he 95.7 0.012 2.7E-07 40.3 3.2 49 5-57 10-58 (61)
241 TIGR02987 met_A_Alw26 type II 95.7 0.033 7.2E-07 55.1 7.4 66 160-226 31-119 (524)
242 COG4627 Uncharacterized protei 95.6 0.007 1.5E-07 49.4 2.1 55 205-259 30-87 (185)
243 PF01170 UPF0020: Putative RNA 95.6 0.027 5.8E-07 47.7 5.7 103 149-252 18-145 (179)
244 PRK15090 DNA-binding transcrip 95.6 0.023 5E-07 50.9 5.5 54 12-72 21-74 (257)
245 COG3355 Predicted transcriptio 95.5 0.026 5.6E-07 44.6 4.9 44 10-57 32-76 (126)
246 COG4301 Uncharacterized conser 95.5 0.067 1.4E-06 47.2 7.7 122 160-283 78-222 (321)
247 PF03059 NAS: Nicotianamine sy 95.5 0.04 8.8E-07 49.7 6.6 95 161-257 121-229 (276)
248 PRK10141 DNA-binding transcrip 95.5 0.026 5.7E-07 44.3 4.7 61 5-70 16-76 (117)
249 PF01022 HTH_5: Bacterial regu 95.4 0.023 4.9E-07 36.8 3.6 45 6-55 3-47 (47)
250 PF03141 Methyltransf_29: Puta 95.4 0.026 5.6E-07 54.5 5.3 97 158-260 363-469 (506)
251 PRK03902 manganese transport t 95.3 0.042 9.2E-07 44.5 5.7 58 10-75 13-70 (142)
252 TIGR00308 TRM1 tRNA(guanine-26 95.2 0.047 1E-06 51.7 6.4 91 162-258 46-147 (374)
253 PF13412 HTH_24: Winged helix- 95.2 0.029 6.3E-07 36.4 3.6 43 8-54 6-48 (48)
254 KOG1663 O-methyltransferase [S 95.2 0.13 2.8E-06 44.9 8.5 99 160-263 73-188 (237)
255 KOG1709 Guanidinoacetate methy 95.2 0.085 1.8E-06 45.6 7.2 100 158-260 99-208 (271)
256 smart00347 HTH_MARR helix_turn 95.2 0.045 9.8E-07 40.8 5.2 67 6-76 11-79 (101)
257 COG2384 Predicted SAM-dependen 95.2 0.14 3E-06 44.4 8.5 100 161-265 17-148 (226)
258 TIGR02702 SufR_cyano iron-sulf 95.1 0.039 8.5E-07 47.6 5.3 66 7-76 3-72 (203)
259 COG1189 Predicted rRNA methyla 95.0 0.15 3.2E-06 44.8 8.5 101 149-256 68-176 (245)
260 KOG3987 Uncharacterized conser 95.0 0.013 2.7E-07 50.3 1.7 94 158-257 109-206 (288)
261 PLN02668 indole-3-acetate carb 95.0 0.16 3.5E-06 48.1 9.2 103 160-263 63-242 (386)
262 KOG1269 SAM-dependent methyltr 94.9 0.028 6.1E-07 52.8 3.9 100 161-264 111-221 (364)
263 PF13578 Methyltransf_24: Meth 94.9 0.011 2.4E-07 45.1 1.0 91 165-258 1-105 (106)
264 PHA00738 putative HTH transcri 94.8 0.052 1.1E-06 41.5 4.5 62 5-71 12-73 (108)
265 KOG4058 Uncharacterized conser 94.8 0.089 1.9E-06 42.8 6.0 108 149-264 62-178 (199)
266 COG4742 Predicted transcriptio 94.8 0.042 9.2E-07 49.0 4.6 55 14-77 21-75 (260)
267 COG2520 Predicted methyltransf 94.8 0.054 1.2E-06 50.4 5.3 99 160-266 188-297 (341)
268 PF07757 AdoMet_MTase: Predict 94.7 0.027 5.7E-07 43.2 2.7 32 159-193 57-88 (112)
269 PRK11050 manganese transport r 94.7 0.072 1.6E-06 43.8 5.4 58 11-76 43-100 (152)
270 KOG3924 Putative protein methy 94.6 0.075 1.6E-06 49.8 5.8 110 151-265 184-315 (419)
271 TIGR02431 pcaR_pcaU beta-ketoa 94.6 0.061 1.3E-06 47.8 5.2 47 17-72 22-68 (248)
272 TIGR02010 IscR iron-sulfur clu 94.5 0.065 1.4E-06 43.1 4.7 47 17-69 23-69 (135)
273 PRK09834 DNA-binding transcrip 94.5 0.069 1.5E-06 48.0 5.4 52 17-75 24-75 (263)
274 COG1414 IclR Transcriptional r 94.5 0.061 1.3E-06 47.9 4.9 46 19-71 19-64 (246)
275 COG3315 O-Methyltransferase in 94.5 0.048 1E-06 50.0 4.3 96 161-259 93-210 (297)
276 PF09012 FeoC: FeoC like trans 94.5 0.034 7.3E-07 39.2 2.6 44 10-57 5-48 (69)
277 PRK11569 transcriptional repre 94.4 0.076 1.6E-06 48.0 5.4 48 17-71 41-88 (274)
278 COG2345 Predicted transcriptio 94.4 0.12 2.7E-06 44.8 6.4 66 7-76 13-82 (218)
279 COG1321 TroR Mn-dependent tran 94.4 0.1 2.2E-06 43.0 5.6 63 6-76 11-73 (154)
280 PRK10857 DNA-binding transcrip 94.2 0.076 1.6E-06 44.3 4.6 47 17-69 23-69 (164)
281 PF13601 HTH_34: Winged helix 94.2 0.041 8.9E-07 40.1 2.6 66 7-76 2-70 (80)
282 TIGR00738 rrf2_super rrf2 fami 94.2 0.072 1.6E-06 42.4 4.3 48 18-71 24-71 (132)
283 PF04072 LCM: Leucine carboxyl 94.1 0.059 1.3E-06 45.7 3.8 85 160-245 78-183 (183)
284 COG1959 Predicted transcriptio 94.1 0.092 2E-06 43.1 4.8 47 18-70 24-70 (150)
285 TIGR00006 S-adenosyl-methyltra 94.0 0.13 2.7E-06 47.3 6.0 66 148-215 9-80 (305)
286 PF07091 FmrO: Ribosomal RNA m 94.0 0.13 2.7E-06 45.6 5.8 104 159-265 104-215 (251)
287 TIGR02337 HpaR homoprotocatech 94.0 0.14 3.1E-06 39.9 5.6 64 10-77 33-98 (118)
288 COG1092 Predicted SAM-dependen 94.0 0.076 1.7E-06 50.4 4.6 102 158-262 215-340 (393)
289 PF04703 FaeA: FaeA-like prote 93.9 0.1 2.2E-06 36.0 4.1 37 17-57 13-49 (62)
290 PF03492 Methyltransf_7: SAM d 93.8 0.22 4.8E-06 46.4 7.4 105 158-263 14-188 (334)
291 PRK10163 DNA-binding transcrip 93.8 0.11 2.4E-06 46.9 5.1 48 17-71 38-85 (271)
292 KOG2730 Methylase [General fun 93.7 0.041 8.9E-07 47.7 2.1 54 160-216 94-155 (263)
293 PF01795 Methyltransf_5: MraW 93.6 0.15 3.3E-06 46.8 5.8 66 148-215 9-80 (310)
294 smart00418 HTH_ARSR helix_turn 93.6 0.18 3.9E-06 33.9 4.9 48 17-69 8-55 (66)
295 KOG2187 tRNA uracil-5-methyltr 93.5 0.057 1.2E-06 52.3 2.9 53 158-213 381-440 (534)
296 PF10672 Methyltrans_SAM: S-ad 93.5 0.081 1.8E-06 48.1 3.7 98 160-259 123-239 (286)
297 PF08220 HTH_DeoR: DeoR-like h 93.4 0.15 3.2E-06 34.5 4.1 44 10-57 5-48 (57)
298 PF04989 CmcI: Cephalosporin h 93.2 0.36 7.7E-06 41.7 7.0 100 161-263 33-152 (206)
299 smart00420 HTH_DEOR helix_turn 93.0 0.18 3.9E-06 32.7 4.0 42 12-57 7-48 (53)
300 COG0742 N6-adenine-specific me 93.0 0.34 7.4E-06 41.1 6.6 100 160-262 43-157 (187)
301 PF01325 Fe_dep_repress: Iron 92.9 0.19 4.2E-06 34.4 4.1 47 7-57 10-56 (60)
302 TIGR02944 suf_reg_Xantho FeS a 92.9 0.14 3E-06 40.8 3.9 47 17-69 23-69 (130)
303 smart00529 HTH_DTXR Helix-turn 92.8 0.2 4.3E-06 37.4 4.5 47 22-76 2-48 (96)
304 PF03444 HrcA_DNA-bdg: Winged 92.8 0.24 5.1E-06 35.7 4.5 64 5-74 8-72 (78)
305 KOG2798 Putative trehalase [Ca 92.8 0.63 1.4E-05 42.6 8.2 96 161-261 151-299 (369)
306 COG2265 TrmA SAM-dependent met 92.7 0.071 1.5E-06 51.4 2.3 113 149-283 283-409 (432)
307 PRK11920 rirA iron-responsive 92.7 0.19 4.2E-06 41.3 4.6 47 17-69 22-68 (153)
308 KOG2915 tRNA(1-methyladenosine 92.6 1.2 2.7E-05 39.9 9.6 90 134-225 76-183 (314)
309 PF12802 MarR_2: MarR family; 92.5 0.14 3E-06 34.8 3.0 34 20-57 22-55 (62)
310 cd00090 HTH_ARSR Arsenical Res 92.3 0.31 6.8E-06 33.7 4.8 47 18-69 19-65 (78)
311 PRK14165 winged helix-turn-hel 92.2 0.37 8E-06 42.0 5.9 69 3-76 3-73 (217)
312 smart00345 HTH_GNTR helix_turn 92.1 0.4 8.8E-06 31.9 4.9 36 18-57 18-54 (60)
313 PF01638 HxlR: HxlR-like helix 92.0 0.2 4.4E-06 37.2 3.5 58 16-76 15-74 (90)
314 PRK11512 DNA-binding transcrip 91.8 0.38 8.2E-06 38.9 5.2 57 16-76 51-109 (144)
315 PF05958 tRNA_U5-meth_tr: tRNA 91.7 0.076 1.6E-06 49.9 1.2 61 148-213 186-253 (352)
316 PRK11014 transcriptional repre 91.6 0.32 6.9E-06 39.3 4.7 46 18-69 24-69 (141)
317 TIGR01884 cas_HTH CRISPR locus 91.6 0.35 7.7E-06 41.6 5.2 55 11-71 149-203 (203)
318 TIGR01610 phage_O_Nterm phage 91.5 0.39 8.5E-06 36.1 4.7 45 17-68 45-89 (95)
319 COG4190 Predicted transcriptio 91.4 0.32 6.9E-06 38.5 4.2 46 8-57 67-112 (144)
320 KOG1562 Spermidine synthase [A 91.3 0.22 4.8E-06 45.1 3.6 101 158-260 119-238 (337)
321 COG0144 Sun tRNA and rRNA cyto 91.2 2.1 4.5E-05 40.3 10.3 110 153-264 150-294 (355)
322 KOG3201 Uncharacterized conser 91.0 0.08 1.7E-06 43.7 0.5 99 161-262 30-144 (201)
323 KOG2793 Putative N2,N2-dimethy 90.9 0.99 2.1E-05 40.1 7.3 99 160-262 86-203 (248)
324 PF01047 MarR: MarR family; I 90.7 0.21 4.5E-06 33.6 2.3 40 14-57 12-51 (59)
325 PF11899 DUF3419: Protein of u 90.7 0.47 1E-05 45.0 5.5 61 204-264 275-340 (380)
326 PRK06266 transcription initiat 90.7 0.35 7.5E-06 40.9 4.1 46 8-57 25-70 (178)
327 TIGR00373 conserved hypothetic 90.6 0.38 8.2E-06 39.8 4.2 43 10-56 19-61 (158)
328 cd07377 WHTH_GntR Winged helix 90.6 0.54 1.2E-05 31.9 4.4 34 20-57 26-59 (66)
329 COG0116 Predicted N6-adenine-s 90.2 2 4.3E-05 40.6 9.0 108 149-257 181-343 (381)
330 TIGR00122 birA_repr_reg BirA b 90.0 0.61 1.3E-05 32.6 4.3 48 15-70 9-56 (69)
331 COG0275 Predicted S-adenosylme 90.0 0.74 1.6E-05 41.9 5.8 66 148-214 12-83 (314)
332 KOG0822 Protein kinase inhibit 89.9 2.6 5.6E-05 41.4 9.6 126 121-255 333-475 (649)
333 TIGR01889 Staph_reg_Sar staphy 89.6 0.81 1.8E-05 35.2 5.1 57 16-76 40-98 (109)
334 PF06163 DUF977: Bacterial pro 89.5 0.54 1.2E-05 37.0 3.9 49 5-57 12-60 (127)
335 PRK03573 transcriptional regul 89.5 0.84 1.8E-05 36.8 5.4 56 18-77 45-102 (144)
336 COG1378 Predicted transcriptio 89.1 0.76 1.7E-05 40.9 5.2 59 10-74 21-79 (247)
337 smart00344 HTH_ASNC helix_turn 89.0 0.51 1.1E-05 36.0 3.6 45 8-56 6-50 (108)
338 PF08461 HTH_12: Ribonuclease 89.0 0.69 1.5E-05 32.3 3.9 53 16-73 10-64 (66)
339 PF00325 Crp: Bacterial regula 89.0 0.51 1.1E-05 27.9 2.7 31 19-53 2-32 (32)
340 COG1041 Predicted DNA modifica 88.9 4.6 0.0001 37.7 10.2 103 158-263 195-315 (347)
341 PRK10870 transcriptional repre 88.7 0.93 2E-05 38.1 5.2 57 17-77 69-127 (176)
342 PF13545 HTH_Crp_2: Crp-like h 88.6 0.91 2E-05 32.1 4.4 44 18-70 27-70 (76)
343 PF08279 HTH_11: HTH domain; 88.5 0.92 2E-05 30.0 4.1 39 10-52 5-44 (55)
344 KOG2918 Carboxymethyl transfer 88.3 3.2 7E-05 38.0 8.6 104 159-264 86-232 (335)
345 PF07789 DUF1627: Protein of u 87.9 0.97 2.1E-05 36.6 4.5 46 16-68 3-50 (155)
346 PF01861 DUF43: Protein of unk 87.2 2.8 6.1E-05 37.1 7.4 87 161-252 45-142 (243)
347 KOG1099 SAM-dependent methyltr 87.0 2 4.4E-05 37.7 6.2 95 158-256 39-161 (294)
348 PRK15431 ferrous iron transpor 87.0 1 2.2E-05 32.5 3.7 42 12-57 9-50 (78)
349 PRK04172 pheS phenylalanyl-tRN 86.9 1.1 2.5E-05 43.9 5.4 67 8-80 9-75 (489)
350 COG1497 Predicted transcriptio 86.9 1.1 2.4E-05 39.3 4.6 59 11-77 17-75 (260)
351 PHA02943 hypothetical protein; 86.9 1.3 2.7E-05 36.2 4.6 43 10-57 16-58 (165)
352 PF01726 LexA_DNA_bind: LexA D 86.8 0.94 2E-05 31.5 3.5 35 19-57 25-60 (65)
353 KOG2352 Predicted spermine/spe 86.5 2.9 6.2E-05 40.6 7.6 102 163-266 51-171 (482)
354 PF14394 DUF4423: Domain of un 86.3 1.4 3.1E-05 36.9 5.0 49 18-72 38-86 (171)
355 cd07153 Fur_like Ferric uptake 86.2 1.7 3.6E-05 33.6 5.0 61 8-68 4-66 (116)
356 PF06859 Bin3: Bicoid-interact 85.8 0.39 8.4E-06 37.0 1.2 37 221-257 3-43 (110)
357 PF07381 DUF1495: Winged helix 85.5 1.7 3.6E-05 32.4 4.4 54 17-75 23-87 (90)
358 PRK09424 pntA NAD(P) transhydr 85.5 3.4 7.4E-05 40.8 7.8 94 160-259 164-286 (509)
359 PF05732 RepL: Firmicute plasm 85.4 1.3 2.7E-05 37.0 4.1 44 19-70 75-118 (165)
360 PF08221 HTH_9: RNA polymerase 85.1 0.82 1.8E-05 31.5 2.4 44 9-56 17-60 (62)
361 PF02002 TFIIE_alpha: TFIIE al 84.5 0.53 1.2E-05 35.9 1.4 44 10-57 18-61 (105)
362 PF12692 Methyltransf_17: S-ad 84.2 1.7 3.6E-05 35.5 4.1 95 161-261 29-137 (160)
363 PRK04214 rbn ribonuclease BN/u 84.2 1.6 3.4E-05 42.0 4.8 46 16-69 307-352 (412)
364 cd08283 FDH_like_1 Glutathione 83.9 8.8 0.00019 36.2 9.8 99 158-259 182-307 (386)
365 PF10354 DUF2431: Domain of un 83.6 6.2 0.00013 32.9 7.6 95 166-261 2-128 (166)
366 PF10007 DUF2250: Uncharacteri 83.4 2.7 5.9E-05 31.4 4.7 38 16-57 18-55 (92)
367 PF00392 GntR: Bacterial regul 83.3 2.1 4.5E-05 29.4 3.9 36 18-57 22-58 (64)
368 PRK13509 transcriptional repre 83.0 1.9 4.2E-05 38.4 4.6 46 8-57 8-53 (251)
369 KOG1596 Fibrillarin and relate 82.9 4.8 0.0001 35.7 6.7 103 158-265 154-268 (317)
370 COG1733 Predicted transcriptio 82.5 2.8 6E-05 33.0 4.7 57 16-76 33-92 (120)
371 PF02153 PDH: Prephenate dehyd 82.4 1.6 3.4E-05 39.1 3.8 72 174-252 1-73 (258)
372 PF05711 TylF: Macrocin-O-meth 82.2 1.7 3.6E-05 38.8 3.8 99 161-261 75-215 (248)
373 PLN02853 Probable phenylalanyl 82.2 2.4 5.3E-05 41.3 5.2 65 10-80 8-73 (492)
374 PRK10742 putative methyltransf 82.2 2.1 4.6E-05 38.1 4.4 109 149-263 76-224 (250)
375 TIGR00498 lexA SOS regulatory 82.2 1.7 3.7E-05 37.1 3.8 36 18-57 24-60 (199)
376 PF13730 HTH_36: Helix-turn-he 81.9 1.8 3.8E-05 28.6 3.0 29 21-53 27-55 (55)
377 COG1064 AdhP Zn-dependent alco 81.8 3 6.5E-05 38.9 5.4 93 158-261 164-262 (339)
378 PF13518 HTH_28: Helix-turn-he 81.6 2.4 5.2E-05 27.3 3.6 38 9-52 4-41 (52)
379 PF01189 Nol1_Nop2_Fmu: NOL1/N 81.4 2.7 5.8E-05 38.2 4.9 106 158-263 83-224 (283)
380 PF11599 AviRa: RRNA methyltra 81.3 5.5 0.00012 34.7 6.4 100 159-258 50-214 (246)
381 PRK11179 DNA-binding transcrip 81.1 2 4.4E-05 35.1 3.7 45 8-56 12-56 (153)
382 PRK11169 leucine-responsive tr 80.5 2.6 5.7E-05 34.9 4.2 45 8-56 17-61 (164)
383 PF12324 HTH_15: Helix-turn-he 80.4 2.1 4.5E-05 30.8 3.0 37 9-49 28-64 (77)
384 PF12793 SgrR_N: Sugar transpo 80.1 2.6 5.7E-05 32.9 3.8 36 18-57 18-53 (115)
385 PRK07502 cyclohexadienyl dehyd 80.1 7.1 0.00015 35.7 7.4 89 162-256 7-98 (307)
386 COG1565 Uncharacterized conser 79.4 2.7 5.9E-05 39.3 4.2 59 129-195 51-119 (370)
387 COG1846 MarR Transcriptional r 79.4 4 8.7E-05 31.1 4.8 56 18-77 35-92 (126)
388 COG3432 Predicted transcriptio 79.3 1.6 3.5E-05 32.7 2.3 56 16-76 28-83 (95)
389 PRK13777 transcriptional regul 79.2 4.8 0.0001 34.2 5.4 58 16-77 56-115 (185)
390 KOG2651 rRNA adenine N-6-methy 79.0 3.3 7.1E-05 39.0 4.6 43 151-195 144-186 (476)
391 COG1522 Lrp Transcriptional re 78.9 2.7 5.8E-05 34.1 3.7 45 9-57 12-56 (154)
392 COG1255 Uncharacterized protei 78.7 25 0.00054 27.5 8.6 90 161-264 14-107 (129)
393 COG1063 Tdh Threonine dehydrog 78.6 8.3 0.00018 36.1 7.4 93 162-263 170-274 (350)
394 PRK10411 DNA-binding transcrip 78.1 3.9 8.4E-05 36.2 4.8 45 9-57 8-52 (240)
395 PTZ00326 phenylalanyl-tRNA syn 78.0 4.1 8.9E-05 39.9 5.2 58 17-80 19-76 (494)
396 COG4189 Predicted transcriptio 77.9 2.9 6.2E-05 36.7 3.7 49 5-57 23-71 (308)
397 PF03514 GRAS: GRAS domain fam 77.6 7.4 0.00016 36.9 6.8 113 149-265 100-250 (374)
398 PF05971 Methyltransf_10: Prot 77.5 4.2 9.1E-05 37.2 4.9 73 161-235 103-193 (299)
399 TIGR02147 Fsuc_second hypothet 77.3 4.1 8.9E-05 36.8 4.7 48 18-71 136-183 (271)
400 COG1510 Predicted transcriptio 77.3 2.6 5.6E-05 35.1 3.1 40 14-57 36-75 (177)
401 COG1675 TFA1 Transcription ini 77.0 3.4 7.5E-05 34.7 3.9 44 10-57 23-66 (176)
402 PRK10906 DNA-binding transcrip 76.9 3.1 6.6E-05 37.2 3.8 46 8-57 8-53 (252)
403 PRK11886 bifunctional biotin-- 76.9 4.5 9.9E-05 37.3 5.1 55 9-70 8-62 (319)
404 COG1725 Predicted transcriptio 76.8 5.7 0.00012 31.5 4.8 41 20-67 36-76 (125)
405 COG1568 Predicted methyltransf 76.7 4.3 9.3E-05 36.7 4.5 202 21-258 36-260 (354)
406 PRK07417 arogenate dehydrogena 76.2 10 0.00022 34.2 7.1 81 163-252 2-85 (279)
407 COG4565 CitB Response regulato 76.0 4.1 8.9E-05 35.3 4.1 49 5-57 158-207 (224)
408 PRK05638 threonine synthase; V 75.9 4.5 9.7E-05 39.2 4.9 64 7-76 373-439 (442)
409 KOG1501 Arginine N-methyltrans 75.1 4 8.7E-05 39.2 4.1 87 161-249 67-165 (636)
410 PF09821 AAA_assoc_C: C-termin 75.1 4 8.6E-05 32.1 3.6 46 24-78 2-47 (120)
411 PF09904 HTH_43: Winged helix- 75.0 1.9 4.1E-05 31.9 1.6 51 15-69 17-70 (90)
412 PF02254 TrkA_N: TrkA-N domain 74.6 3.1 6.8E-05 31.7 2.9 82 169-257 4-95 (116)
413 PRK09802 DNA-binding transcrip 73.5 4.6 9.9E-05 36.4 4.1 45 9-57 21-65 (269)
414 PRK06474 hypothetical protein; 73.3 5.6 0.00012 33.5 4.3 65 5-72 11-80 (178)
415 TIGR03879 near_KaiC_dom probab 73.1 1.8 3.9E-05 30.9 1.1 41 11-55 24-64 (73)
416 PRK09775 putative DNA-binding 72.9 4.8 0.0001 39.0 4.3 51 12-69 6-56 (442)
417 PF09681 Phage_rep_org_N: N-te 72.9 7.7 0.00017 30.5 4.7 49 18-74 52-100 (121)
418 smart00531 TFIIE Transcription 72.8 4 8.7E-05 33.2 3.2 40 10-53 6-45 (147)
419 PRK09333 30S ribosomal protein 72.8 8.1 0.00018 31.6 4.9 52 16-76 64-129 (150)
420 COG0287 TyrA Prephenate dehydr 72.6 14 0.00031 33.4 7.1 86 162-253 4-93 (279)
421 TIGR02698 CopY_TcrY copper tra 72.5 8.1 0.00017 30.7 4.8 52 6-57 5-56 (130)
422 PRK11753 DNA-binding transcrip 71.5 6.4 0.00014 33.4 4.4 35 19-57 168-202 (211)
423 PF13384 HTH_23: Homeodomain-l 71.5 2.8 6.1E-05 26.9 1.7 40 7-52 7-46 (50)
424 PF05584 Sulfolobus_pRN: Sulfo 71.2 6.6 0.00014 27.9 3.5 38 15-56 14-51 (72)
425 PRK09462 fur ferric uptake reg 71.1 9.3 0.0002 31.0 5.0 53 5-57 17-72 (148)
426 TIGR03697 NtcA_cyano global ni 71.1 6.9 0.00015 32.6 4.4 35 19-57 143-177 (193)
427 PRK00215 LexA repressor; Valid 70.7 6.1 0.00013 33.8 4.1 37 17-57 21-58 (205)
428 PRK11161 fumarate/nitrate redu 70.6 6.9 0.00015 33.9 4.5 42 19-69 184-225 (235)
429 PF05206 TRM13: Methyltransfer 70.5 9.4 0.0002 34.3 5.3 35 158-193 16-55 (259)
430 PRK09391 fixK transcriptional 70.5 7.2 0.00016 34.0 4.6 43 19-69 179-221 (230)
431 PF06962 rRNA_methylase: Putat 70.4 3.9 8.4E-05 33.1 2.5 74 188-264 2-97 (140)
432 TIGR02787 codY_Gpos GTP-sensin 69.7 9.5 0.00021 33.7 5.0 37 17-57 196-232 (251)
433 PTZ00357 methyltransferase; Pr 69.7 18 0.00039 37.0 7.4 124 121-250 640-823 (1072)
434 COG1349 GlpR Transcriptional r 69.7 5.8 0.00013 35.4 3.8 45 9-57 9-53 (253)
435 PRK11534 DNA-binding transcrip 68.7 9.8 0.00021 32.9 5.0 47 17-71 28-74 (224)
436 PF13404 HTH_AsnC-type: AsnC-t 68.2 6 0.00013 24.8 2.6 35 9-47 7-41 (42)
437 PRK13918 CRP/FNR family transc 68.2 8 0.00017 32.6 4.3 42 19-69 149-190 (202)
438 cd01842 SGNH_hydrolase_like_5 68.2 11 0.00024 31.8 4.8 41 221-261 52-102 (183)
439 PF10668 Phage_terminase: Phag 67.6 5.3 0.00012 27.3 2.4 33 8-44 10-43 (60)
440 PRK03659 glutathione-regulated 67.5 23 0.00049 35.9 7.9 87 162-257 401-497 (601)
441 COG2512 Predicted membrane-ass 67.5 6.6 0.00014 35.2 3.6 48 7-58 197-245 (258)
442 PF14338 Mrr_N: Mrr N-terminal 67.1 11 0.00024 27.8 4.3 34 40-77 57-90 (92)
443 PRK10434 srlR DNA-bindng trans 66.8 7.8 0.00017 34.6 4.0 45 9-57 9-53 (256)
444 PF03686 UPF0146: Uncharacteri 66.0 11 0.00023 30.0 4.1 86 161-259 14-103 (127)
445 PRK00082 hrcA heat-inducible t 65.9 8.4 0.00018 36.0 4.2 49 5-57 10-61 (339)
446 PF11994 DUF3489: Protein of u 65.8 22 0.00048 25.2 5.3 42 10-55 15-58 (72)
447 TIGR03433 padR_acidobact trans 65.5 19 0.0004 27.1 5.3 63 15-77 13-83 (100)
448 PRK09954 putative kinase; Prov 65.4 8.2 0.00018 36.1 4.1 43 9-55 7-49 (362)
449 KOG2539 Mitochondrial/chloropl 65.2 6.2 0.00014 38.2 3.2 105 160-264 200-321 (491)
450 PF00165 HTH_AraC: Bacterial r 65.2 7.9 0.00017 23.9 2.7 29 17-49 6-34 (42)
451 TIGR03338 phnR_burk phosphonat 65.1 11 0.00024 32.2 4.5 47 17-71 32-78 (212)
452 PF04182 B-block_TFIIIC: B-blo 65.0 10 0.00022 26.9 3.6 37 17-57 16-52 (75)
453 PF05491 RuvB_C: Holliday junc 64.7 10 0.00022 27.3 3.4 47 16-71 22-69 (76)
454 PF06969 HemN_C: HemN C-termin 64.5 11 0.00025 25.6 3.7 47 17-72 18-65 (66)
455 PF14502 HTH_41: Helix-turn-he 64.4 15 0.00034 23.8 3.9 35 19-57 6-40 (48)
456 PRK11639 zinc uptake transcrip 64.2 15 0.00033 30.6 5.0 54 4-57 25-80 (169)
457 TIGR00635 ruvB Holliday juncti 64.2 7.2 0.00016 35.4 3.4 38 16-57 252-290 (305)
458 PF08784 RPA_C: Replication pr 63.6 7.7 0.00017 29.2 2.9 36 17-56 63-98 (102)
459 PF01475 FUR: Ferric uptake re 63.4 7.6 0.00016 30.1 2.9 64 6-69 9-74 (120)
460 PRK10402 DNA-binding transcrip 63.4 11 0.00024 32.7 4.2 41 19-68 169-209 (226)
461 PRK06719 precorrin-2 dehydroge 63.3 42 0.00091 27.5 7.5 63 161-227 13-78 (157)
462 PF05331 DUF742: Protein of un 62.8 11 0.00023 29.4 3.6 37 17-57 53-89 (114)
463 PRK03562 glutathione-regulated 62.5 40 0.00086 34.3 8.6 87 162-256 401-496 (621)
464 PRK08507 prephenate dehydrogen 62.3 23 0.00049 31.8 6.2 81 163-252 2-85 (275)
465 PF03297 Ribosomal_S25: S25 ri 62.3 24 0.00053 27.0 5.4 46 17-66 57-102 (105)
466 PF02796 HTH_7: Helix-turn-hel 61.8 5.5 0.00012 25.3 1.5 30 10-45 14-43 (45)
467 COG1802 GntR Transcriptional r 61.7 14 0.00031 32.1 4.7 48 17-72 37-84 (230)
468 TIGR01714 phage_rep_org_N phag 61.5 19 0.0004 28.3 4.7 46 18-71 50-95 (119)
469 PF13814 Replic_Relax: Replica 61.5 19 0.00042 30.1 5.3 56 17-76 7-71 (191)
470 COG0735 Fur Fe2+/Zn2+ uptake r 61.5 19 0.0004 29.3 5.0 54 4-57 20-75 (145)
471 PF02636 Methyltransf_28: Puta 61.3 9.9 0.00021 33.7 3.6 33 161-194 19-59 (252)
472 cd00315 Cyt_C5_DNA_methylase C 61.2 28 0.00062 31.3 6.6 99 163-263 2-115 (275)
473 KOG0024 Sorbitol dehydrogenase 61.2 37 0.00079 31.6 7.2 98 157-263 166-278 (354)
474 COG5379 BtaA S-adenosylmethion 61.0 9.8 0.00021 34.8 3.4 57 204-260 307-368 (414)
475 COG2524 Predicted transcriptio 60.9 19 0.0004 32.3 5.1 65 5-75 10-75 (294)
476 PRK11414 colanic acid/biofilm 60.8 17 0.00036 31.4 4.9 37 17-57 32-68 (221)
477 PF11972 HTH_13: HTH DNA bindi 60.4 16 0.00035 24.4 3.6 48 9-67 3-50 (54)
478 PRK04424 fatty acid biosynthes 60.1 5.5 0.00012 33.8 1.7 44 9-56 11-54 (185)
479 cd08237 ribitol-5-phosphate_DH 59.9 44 0.00095 30.8 7.9 93 159-259 162-257 (341)
480 PF07848 PaaX: PaaX-like prote 59.8 12 0.00025 26.5 3.0 52 17-70 18-69 (70)
481 KOG2165 Anaphase-promoting com 59.4 16 0.00036 37.0 5.0 52 16-71 613-664 (765)
482 TIGR00331 hrcA heat shock gene 59.1 11 0.00024 35.2 3.6 49 5-57 6-57 (337)
483 TIGR01470 cysG_Nterm siroheme 58.9 47 0.001 28.5 7.3 65 161-227 9-77 (205)
484 PRK12423 LexA repressor; Provi 58.7 15 0.00033 31.5 4.2 35 19-57 25-60 (202)
485 COG0686 Ald Alanine dehydrogen 58.6 21 0.00044 33.1 5.1 90 161-255 168-265 (371)
486 PRK10736 hypothetical protein; 58.3 18 0.00039 34.3 4.9 45 16-68 318-362 (374)
487 PF08280 HTH_Mga: M protein tr 57.9 7.1 0.00015 26.3 1.6 37 8-48 8-44 (59)
488 PF03965 Penicillinase_R: Peni 57.9 8.5 0.00018 29.7 2.3 51 7-57 5-55 (115)
489 PRK09334 30S ribosomal protein 57.8 22 0.00048 26.2 4.3 37 17-57 39-75 (86)
490 COG4519 Uncharacterized protei 57.8 21 0.00045 25.8 4.0 49 17-69 20-71 (95)
491 PF02981 FokI_N: Restriction e 57.7 11 0.00023 30.4 2.8 34 40-76 109-142 (145)
492 PRK13239 alkylmercury lyase; P 57.5 11 0.00025 32.5 3.2 39 6-48 23-61 (206)
493 PF08222 HTH_CodY: CodY helix- 56.8 12 0.00026 25.3 2.5 37 17-57 2-38 (61)
494 PLN02494 adenosylhomocysteinas 56.4 23 0.0005 34.7 5.4 101 146-259 239-342 (477)
495 PF01210 NAD_Gly3P_dh_N: NAD-d 55.8 9.1 0.0002 31.3 2.3 89 163-258 1-103 (157)
496 KOG2352 Predicted spermine/spe 55.3 10 0.00022 36.9 2.8 103 159-264 294-421 (482)
497 PF04445 SAM_MT: Putative SAM- 55.2 15 0.00032 32.5 3.6 109 149-263 63-211 (234)
498 KOG1098 Putative SAM-dependent 54.7 43 0.00094 33.8 6.9 44 151-194 35-78 (780)
499 PF08672 APC2: Anaphase promot 54.6 15 0.00033 25.1 2.8 29 34-67 32-60 (60)
500 PRK01747 mnmC bifunctional tRN 54.4 10 0.00022 38.7 2.8 92 161-257 58-205 (662)
No 1
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=9.4e-43 Score=309.54 Aligned_cols=229 Identities=28% Similarity=0.462 Sum_probs=198.8
Q ss_pred CceEEcChhchhhhcCCCCCChHHHHHHhcchhhhhhhhhHHHHhcCCCCChhhhhhCCChhhhhhcCchHHHHHHHHhh
Q 021707 62 ERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAIS 141 (309)
Q Consensus 62 ~~~y~~t~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 141 (309)
+++|+||+.|+.|+.+.++.++..++.++..+..+++|.+|.+++++|. ++|+..+|.++|+|++++|+..+.|+++|+
T Consensus 3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 81 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMA 81 (241)
T ss_dssp TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence 5799999999999888655678887777677888999999999999999 899999999999999999999999999999
Q ss_pred cCCcccH-HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCCCCceEEeCCCCCCCCCC
Q 021707 142 GVSVPFM-TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAA 220 (309)
Q Consensus 142 ~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~~p~~ 220 (309)
..+.... +.+...++ |++..+|||||||+|.++.+++++||+++ ++++|+|++++.+++.+||++++||+|+++|.+
T Consensus 82 ~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~-~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~ 159 (241)
T PF00891_consen 82 EYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLR-ATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVA 159 (241)
T ss_dssp HHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSE-EEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSE
T ss_pred hhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCc-ceeeccHhhhhccccccccccccccHHhhhccc
Confidence 9888766 77888887 99999999999999999999999999999 999999999999888999999999999889999
Q ss_pred ceeeehhhhhcCChhHHHHHHHHHHHhcCCC--cEEEEeccccCCCCCchhhhhhhhcccHhhhcccccCCccccee
Q 021707 221 NAIFMKWVLATWTDDECKLIMENCYKALLAG--GKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFYF 295 (309)
Q Consensus 221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pg--G~l~i~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~~g~~rt~~ 295 (309)
|+|+++++||+|+|+++++||++++++|+|| |+|+|.|.++++++...........+||+||+ +.+|++||..
T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~--~~~G~~rt~~ 234 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLV--LTGGKERTEE 234 (241)
T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHH--HHSSS-EEHH
T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHH--hcCCCCcCHH
Confidence 9999999999999999999999999999999 99999999999987633221122689999999 5669999964
No 2
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=7.8e-41 Score=301.49 Aligned_cols=287 Identities=34% Similarity=0.567 Sum_probs=250.7
Q ss_pred cchhhhhhhhhhcCCCCCCHHHHHHHhC-cCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcCCCCC
Q 021707 3 DNECRDGRKKVRLANTPLSVSQILTCIL-PSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEGL 81 (309)
Q Consensus 3 ~~~~~~g~~~~~l~~~~~t~~eLA~~~~-~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~~~~~ 81 (309)
+++|++|+|+.+-..++ ..|+|..++ |.+..++-.+.|+||.|++.++++....+ .. .|+++|+++++.+..+..
T Consensus 24 k~A~eL~v~d~l~~~~~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~-~~-~Y~~~~~~~~~l~~~~~~ 99 (342)
T KOG3178|consen 24 KAACELGVFDILANAGS--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVG-GE-VYSATPVCKYFLKDSGGG 99 (342)
T ss_pred HHHHHcChHHHHHhCCC--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeec-ce-eeeccchhhhheecCCCC
Confidence 47899999998866554 888888884 45567789999999999999999987632 12 899999999988765557
Q ss_pred ChHHHHHHhcchhhhhhhhhHHHHhcCCCCChhhhhhCCChhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhcCCCCCc
Q 021707 82 SYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGV 161 (309)
Q Consensus 82 ~~~~~i~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~ 161 (309)
++..+++..++...++.|..|.++++.+. .+|..++|+..++|...++.....|+++|...+..+...+++.+..|+..
T Consensus 100 S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v 178 (342)
T KOG3178|consen 100 SLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGV 178 (342)
T ss_pred chhHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccC
Confidence 88888888888889999999999999998 68999999889999988888889999999998888888888887667788
Q ss_pred ceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCC-CCceEEeCCCCCCCCCCceeeehhhhhcCChhHHHHH
Q 021707 162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSI-PGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLI 240 (309)
Q Consensus 162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~-~ri~~~~~d~~~~~p~~D~i~~~~vlh~~~d~~~~~i 240 (309)
...||||||.|..+..++.+||+++ ++.+|+|.+++.++.. +.|+.+.||+|++.|.+|+|++.|+||||+|++|+++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik-~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvki 257 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIK-GINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVKI 257 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCc-eeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccCChHHHHHH
Confidence 9999999999999999999999999 9999999999999988 8999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEeccccCC-CCCchhhhhhhhcccHhhhcccccCCcccceee
Q 021707 241 MENCYKALLAGGKLIACEPVLLD-DSNESQRTRALLEGDIFVMTIYRAKDDNSFYFF 296 (309)
Q Consensus 241 L~~~~~aL~pgG~l~i~e~~~~~-~~~~~~~~~~~~~~dl~ml~~~~~~g~~rt~~~ 296 (309)
|++|+++|+|||+|++.|.+.|+ +....-.....+.+|+.||+ .+.+|++||...
T Consensus 258 LknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~-~~~~Gkert~~e 313 (342)
T KOG3178|consen 258 LKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLT-QTSGGKERTLKE 313 (342)
T ss_pred HHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHH-HhccceeccHHH
Confidence 99999999999999999999996 22211123456789999999 578899999754
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=7.7e-36 Score=274.15 Aligned_cols=242 Identities=18% Similarity=0.235 Sum_probs=188.6
Q ss_pred chhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcCCCCCC-
Q 021707 4 NECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEGLS- 82 (309)
Q Consensus 4 ~~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~~~~~~- 82 (309)
+.|++|+|+.+ .++|.|++|||+++ |++++.++|||++|+++|++++. ++.|++|+.++.++.+.++.+
T Consensus 9 aa~~Lglfd~L-~~gp~t~~eLA~~~----~~~~~~~~~lL~~L~~lgll~~~-----~~~y~~t~~~~~~l~~~~~~~~ 78 (306)
T TIGR02716 9 AAIELDLFSHM-AEGPKDLATLAADT----GSVPPRLEMLLETLRQMRVINLE-----DGKWSLTEFADYMFSPTPKEPN 78 (306)
T ss_pred HHHHcCcHHHH-hcCCCCHHHHHHHc----CCChHHHHHHHHHHHhCCCeEec-----CCcEecchhHHhhccCCccchh
Confidence 46889999977 67999999999999 99999999999999999999987 579999999987776644321
Q ss_pred --hHHHHHHhcchhhhhhhhhHHHHhcCCCCChhhhhhCCChhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhcCCCCC
Q 021707 83 --YAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKG 160 (309)
Q Consensus 83 --~~~~i~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~ 160 (309)
+..++.+.. ......|.+|+++++++ ++|...++ +.+..++....|...+........+.+++.++ +++
T Consensus 79 ~~~~~~~~~~~-~~~~~~~~~l~~~~r~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~ 149 (306)
T TIGR02716 79 LHQTPVAKAMA-FLADDFYMGLSQAVRGQ--KNFKGQVP-----YPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDG 149 (306)
T ss_pred hhcCchHHHHH-HHHHHHHHhHHHHhcCC--cccccccC-----CCCCCHHHHHhHHHHHHhcchhHHHHHHHHcC-CCC
Confidence 122333221 12335789999999853 34432221 11112223233343333444445566777776 888
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCC-------CCceEEeCCCCCC-CCCCceeeehhhhhcC
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSI-------PGVTHIGGDMFNS-IPAANAIFMKWVLATW 232 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~-------~ri~~~~~d~~~~-~p~~D~i~~~~vlh~~ 232 (309)
..+|||||||+|.++..+++++|+++ ++++|+|.+++.++++ +||+++++|+++. +|.+|+|++++++|+|
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~~~-~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~~ 228 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPELD-STILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSA 228 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCCCE-EEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhhcC
Confidence 89999999999999999999999999 9999999998877542 6899999999964 6767999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707 233 TDDECKLIMENCYKALLAGGKLIACEPVLLDDS 265 (309)
Q Consensus 233 ~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~ 265 (309)
+++++.++|++++++|+|||+++|.|.+++++.
T Consensus 229 ~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~ 261 (306)
T TIGR02716 229 NEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE 261 (306)
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC
Confidence 999999999999999999999999999887754
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=2.9e-15 Score=131.36 Aligned_cols=114 Identities=20% Similarity=0.281 Sum_probs=97.6
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC-CCC-
Q 021707 149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-IPA- 219 (309)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-~p~- 219 (309)
+.+++... ..++.+|||||||||.++..+++..+..+ ++++|. +.|++.++++ ..|+|+.+|+.+. +|.
T Consensus 41 ~~~i~~~~-~~~g~~vLDva~GTGd~a~~~~k~~g~g~-v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~ 118 (238)
T COG2226 41 RALISLLG-IKPGDKVLDVACGTGDMALLLAKSVGTGE-VVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDN 118 (238)
T ss_pred HHHHHhhC-CCCCCEEEEecCCccHHHHHHHHhcCCce-EEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCC
Confidence 33444443 33678999999999999999999999888 999999 7899998764 2399999999874 776
Q ss_pred -CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCCC
Q 021707 220 -ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSN 266 (309)
Q Consensus 220 -~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~~ 266 (309)
.|+|.+++.||+++|.+ +.|++++|+|+|||++++.|+..|+.+.
T Consensus 119 sFD~vt~~fglrnv~d~~--~aL~E~~RVlKpgG~~~vle~~~p~~~~ 164 (238)
T COG2226 119 SFDAVTISFGLRNVTDID--KALKEMYRVLKPGGRLLVLEFSKPDNPV 164 (238)
T ss_pred ccCEEEeeehhhcCCCHH--HHHHHHHHhhcCCeEEEEEEcCCCCchh
Confidence 39999999999999874 9999999999999999999999998754
No 5
>PRK06922 hypothetical protein; Provisional
Probab=99.61 E-value=5.1e-15 Score=144.96 Aligned_cols=144 Identities=17% Similarity=0.223 Sum_probs=113.2
Q ss_pred CChhhhhhcCchHHHHHHHHhhcCCcc--cHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhH
Q 021707 120 EPAYSYYGKMPEMNGLMRRAISGVSVP--FMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEV 196 (309)
Q Consensus 120 ~~~~~~~~~~~~~~~~f~~~m~~~~~~--~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~ 196 (309)
..+|+++..+++..++|...|...... ........++ +.++.+|||||||+|.++..+++.+|+.+ ++++|+ +.+
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~k-VtGIDIS~~M 454 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKR-IYGIDISENV 454 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCE-EEEEECCHHH
Confidence 568899888888888888777653332 1222233444 66678999999999999999999999999 999999 567
Q ss_pred HhhCCCC-----CCceEEeCCCCCC---CCC--CceeeehhhhhcC-----------ChhHHHHHHHHHHHhcCCCcEEE
Q 021707 197 VGEAPSI-----PGVTHIGGDMFNS---IPA--ANAIFMKWVLATW-----------TDDECKLIMENCYKALLAGGKLI 255 (309)
Q Consensus 197 ~~~a~~~-----~ri~~~~~d~~~~---~p~--~D~i~~~~vlh~~-----------~d~~~~~iL~~~~~aL~pgG~l~ 255 (309)
++.++++ .+++++++|..+. ++. .|+|+++.++|+| ++++..++|++++++|+|||+++
T Consensus 455 Le~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLI 534 (677)
T PRK06922 455 IDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRII 534 (677)
T ss_pred HHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEE
Confidence 7776542 4688899998652 333 4999999999976 34678899999999999999999
Q ss_pred EeccccCCCC
Q 021707 256 ACEPVLLDDS 265 (309)
Q Consensus 256 i~e~~~~~~~ 265 (309)
|.|.+.++++
T Consensus 535 I~D~v~~E~~ 544 (677)
T PRK06922 535 IRDGIMTEDK 544 (677)
T ss_pred EEeCccCCch
Confidence 9999888764
No 6
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.59 E-value=1.1e-14 Score=129.82 Aligned_cols=107 Identities=21% Similarity=0.341 Sum_probs=92.3
Q ss_pred CCcceEEEecCCccHHHHHHHH--hcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC-CCCCceeeehh
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQ--KHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS-IPAANAIFMKW 227 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~--~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~p~~D~i~~~~ 227 (309)
....+|||||||+|..+..+++ .+|+.+ ++++|. +.+++.++++ .+++++++|+.+. .+..|+|++..
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~-v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~ 133 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCK-IIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 133 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhh
Confidence 4567999999999999999988 468899 999998 8888887652 4899999999764 44569999999
Q ss_pred hhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCCC
Q 021707 228 VLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSN 266 (309)
Q Consensus 228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~~ 266 (309)
++|++++++..+++++++++|+|||.+++.|.+..++..
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~ 172 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAK 172 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcch
Confidence 999999888889999999999999999999988776543
No 7
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.59 E-value=4.1e-15 Score=115.87 Aligned_cols=97 Identities=21% Similarity=0.293 Sum_probs=81.8
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCC-CCC-CC-CCceeeehh-h
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDM-FNS-IP-AANAIFMKW-V 228 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~-~~~-~p-~~D~i~~~~-v 228 (309)
..+|||||||+|.++..+++.+|+.+ ++++|. |.+++.+++ .+||+++.+|+ ... .+ +.|+|++.. .
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGAR-VVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSE-EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 57899999999999999999999999 999998 777776654 38999999999 333 33 359999998 6
Q ss_pred hhcCCh-hHHHHHHHHHHHhcCCCcEEEEec
Q 021707 229 LATWTD-DECKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 229 lh~~~d-~~~~~iL~~~~~aL~pgG~l~i~e 258 (309)
+|++.+ ++..++|+++++.|+|||+++|.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 665543 578899999999999999999875
No 8
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.55 E-value=2.1e-14 Score=127.43 Aligned_cols=106 Identities=17% Similarity=0.213 Sum_probs=92.1
Q ss_pred CCcceEEEecCCccHHHHHHHHhc--CCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC-CCCCceeeehh
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQKH--HFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS-IPAANAIFMKW 227 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~p~~D~i~~~~ 227 (309)
....+|||||||+|.++..+++.+ |+.+ ++++|+ +.+++.++++ .+++++.+|+.+. .+..|++++.+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~-v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVK-IIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeec
Confidence 355789999999999999999874 7889 999999 7888777542 4789999999764 55579999999
Q ss_pred hhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707 228 VLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS 265 (309)
Q Consensus 228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~ 265 (309)
++|++++++..++|++++++|+|||.+++.|.+.+++.
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~ 168 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDT 168 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCH
Confidence 99999988888999999999999999999999887754
No 9
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.54 E-value=6.4e-15 Score=129.93 Aligned_cols=112 Identities=19% Similarity=0.315 Sum_probs=83.7
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC-CCC
Q 021707 149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-IPA 219 (309)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-~p~ 219 (309)
..+++... ...+.+|||||||+|.++..+++.. |+.+ ++++|+ +.|++.++++ .+|+++.+|..+. +|.
T Consensus 37 ~~~~~~~~-~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~-v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d 114 (233)
T PF01209_consen 37 RKLIKLLG-LRPGDRVLDVACGTGDVTRELARRVGPNGK-VVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD 114 (233)
T ss_dssp SHHHHHHT---S--EEEEET-TTSHHHHHHGGGSS---E-EEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T
T ss_pred HHHHhccC-CCCCCEEEEeCCChHHHHHHHHHHCCCccE-EEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC
Confidence 34455443 5567899999999999999999875 6678 999998 7899888752 5899999999764 665
Q ss_pred --CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 220 --ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 220 --~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
.|+|++++.+|+++|. .+.|++++++|||||+++|+|...|+.
T Consensus 115 ~sfD~v~~~fglrn~~d~--~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 115 NSFDAVTCSFGLRNFPDR--ERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp T-EEEEEEES-GGG-SSH--HHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred CceeEEEHHhhHHhhCCH--HHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 3999999999999986 479999999999999999999998886
No 10
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.53 E-value=7.3e-14 Score=125.09 Aligned_cols=106 Identities=19% Similarity=0.233 Sum_probs=90.4
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCCCCC--Cceee
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNSIPA--ANAIF 224 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~~p~--~D~i~ 224 (309)
...+++.+. .....+|||||||+|.++..+++++|+.+ ++++|. +.+++.+++. +++++.+|+.+..+. .|+|+
T Consensus 18 ~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~-v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~fD~v~ 94 (255)
T PRK14103 18 FYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAV-IEALDSSPEMVAAARER-GVDARTGDVRDWKPKPDTDVVV 94 (255)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHhc-CCcEEEcChhhCCCCCCceEEE
Confidence 356777775 66778999999999999999999999999 999999 7888888653 799999998654332 59999
Q ss_pred ehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707 225 MKWVLATWTDDECKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 225 ~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e 258 (309)
++.++|++++. .++|++++++|+|||++++..
T Consensus 95 ~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 95 SNAALQWVPEH--ADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EehhhhhCCCH--HHHHHHHHHhCCCCcEEEEEc
Confidence 99999999876 589999999999999999874
No 11
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.51 E-value=2.2e-13 Score=122.47 Aligned_cols=104 Identities=21% Similarity=0.202 Sum_probs=88.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCCC---------CCceEEeCCCCCC-CCC--Ccee
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPSI---------PGVTHIGGDMFNS-IPA--ANAI 223 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~~---------~ri~~~~~d~~~~-~p~--~D~i 223 (309)
.....+|||||||+|.++..+++.+ |+.+ ++++|. +.|++.++++ ++++++.+|+.+. ++. .|+|
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~-V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V 149 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGK-VMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAI 149 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEE
Confidence 4556799999999999999999875 6678 999999 7788877532 4799999998763 554 3999
Q ss_pred eehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 224 FMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 224 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
++.+++|++++. .++|++++++|+|||++++.|...++.
T Consensus 150 ~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~ 188 (261)
T PLN02233 150 TMGYGLRNVVDR--LKAMQEMYRVLKPGSRVSILDFNKSTQ 188 (261)
T ss_pred EEecccccCCCH--HHHHHHHHHHcCcCcEEEEEECCCCCc
Confidence 999999999876 589999999999999999999887664
No 12
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.48 E-value=2.3e-13 Score=117.32 Aligned_cols=112 Identities=14% Similarity=0.118 Sum_probs=89.9
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC-CCC
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-IPA 219 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-~p~ 219 (309)
.+.+++.++ .....+|||+|||+|.++..++++ ..+ ++++|. +.+++.+++. .++++...|+.+. ++.
T Consensus 19 ~~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~-V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 94 (197)
T PRK11207 19 HSEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFD-VTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDG 94 (197)
T ss_pred hHHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCE-EEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCC
Confidence 355666665 555689999999999999999986 457 999999 6677766532 5688999998764 444
Q ss_pred -CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 220 -ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 220 -~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
.|+|++..++|++++++..+++++++++|+|||++++.+.+.++
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~ 139 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTA 139 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCC
Confidence 49999999999999888899999999999999998777655443
No 13
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.48 E-value=3e-13 Score=121.69 Aligned_cols=114 Identities=18% Similarity=0.264 Sum_probs=94.6
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----CCCceEEeCCCCCC-CCC--
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----IPGVTHIGGDMFNS-IPA-- 219 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~~ri~~~~~d~~~~-~p~-- 219 (309)
...+++.++ ..+..+|||||||+|..+..+++.+ ..+ ++++|+ +.+++.+++ .++++++.+|+.+. +|.
T Consensus 41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~-v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAH-VHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCE-EEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence 355677775 7778899999999999999998775 668 999998 667776654 36899999999764 554
Q ss_pred CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
.|+|++..++++++.++..++|+++++.|+|||++++.|......
T Consensus 118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~ 162 (263)
T PTZ00098 118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKI 162 (263)
T ss_pred eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccc
Confidence 499999999988987677899999999999999999999876653
No 14
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.46 E-value=2.7e-12 Score=115.47 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=84.2
Q ss_pred CCCcceEEEecCCccH----HHHHHHHhcC-----CCceEEEeec-hhHHhhCCCC------------------------
Q 021707 158 FKGVKRLVDVGGSAGD----CLRMILQKHH-----FICEGINFDL-PEVVGEAPSI------------------------ 203 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~----~~~~l~~~~p-----~~~~~~~~D~-p~~~~~a~~~------------------------ 203 (309)
..+..+|+|+|||+|. +++.+++.+| +.+ +++.|+ +.+++.|++.
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~-I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~ 175 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVK-ILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVED 175 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeE-EEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCC
Confidence 3445799999999996 5667777665 467 999999 7788877652
Q ss_pred ---------CCceEEeCCCCCCCC-C--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707 204 ---------PGVTHIGGDMFNSIP-A--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV 260 (309)
Q Consensus 204 ---------~ri~~~~~d~~~~~p-~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~ 260 (309)
.+|+|..+|+.++.+ . .|+|++++++|+|++++..+++++++++|+|||++++...-
T Consensus 176 ~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 176 KYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred eEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 378999999988633 3 49999999999999888899999999999999999987543
No 15
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.44 E-value=8.8e-13 Score=118.20 Aligned_cols=106 Identities=20% Similarity=0.290 Sum_probs=90.7
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-CCceEEeCCCCCCCCC--Ccee
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-PGVTHIGGDMFNSIPA--ANAI 223 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-~ri~~~~~d~~~~~p~--~D~i 223 (309)
...++..++ ..+..+|||||||+|.++..+++.+|+.+ ++++|. +.+++.++++ ++++++.+|+.+..+. .|+|
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~-v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAAR-ITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence 456777775 66778999999999999999999999999 999999 7788888764 7899999998764332 4999
Q ss_pred eehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707 224 FMKWVLATWTDDECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 224 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
+++.++|++++. .++|++++++|+|||++++.
T Consensus 98 ~~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 98 FANASLQWLPDH--LELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEccChhhCCCH--HHHHHHHHHhcCCCcEEEEE
Confidence 999999988876 58999999999999999886
No 16
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.43 E-value=1.6e-12 Score=114.55 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=90.9
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCC-CCC
Q 021707 149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNS-IPA 219 (309)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~-~p~ 219 (309)
..+++.++ .....+|||+|||+|.++..+++.+ |+.+ ++++|. +.+++.+++ .++++++.+|..+. ++.
T Consensus 35 ~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (231)
T TIGR02752 35 KDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGH-VIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDD 112 (231)
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCC
Confidence 44566664 6667899999999999999999886 6778 999999 677766653 26899999998764 444
Q ss_pred --CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 220 --ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 220 --~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
.|+|++.+++|++++. .++|+++.+.|+|||++++.|...+.
T Consensus 113 ~~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~ 156 (231)
T TIGR02752 113 NSFDYVTIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPT 156 (231)
T ss_pred CCccEEEEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 3999999999998876 48999999999999999999876544
No 17
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.42 E-value=1.2e-12 Score=113.55 Aligned_cols=110 Identities=17% Similarity=0.238 Sum_probs=92.8
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCC------CceEEEeec-hhHHhhCCCC---------CCceEEeCCCC
Q 021707 151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF------ICEGINFDL-PEVVGEAPSI---------PGVTHIGGDMF 214 (309)
Q Consensus 151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~------~~~~~~~D~-p~~~~~a~~~---------~ri~~~~~d~~ 214 (309)
.+..+. -.+..++|||+||+|..+..++++-+. .+ ++++|. |++++.++++ .++.|+++|..
T Consensus 92 ~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~-V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE 169 (296)
T KOG1540|consen 92 FVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESK-VTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAE 169 (296)
T ss_pred hhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCce-EEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcc
Confidence 334443 344689999999999999999999887 56 999998 8888877542 56999999997
Q ss_pred CC-CCC--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 215 NS-IPA--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 215 ~~-~p~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
+. +|. .|.|.+.+-+.+|++.+ +.|++++|+|||||++.+.|+..-++
T Consensus 170 ~LpFdd~s~D~yTiafGIRN~th~~--k~l~EAYRVLKpGGrf~cLeFskv~~ 220 (296)
T KOG1540|consen 170 DLPFDDDSFDAYTIAFGIRNVTHIQ--KALREAYRVLKPGGRFSCLEFSKVEN 220 (296)
T ss_pred cCCCCCCcceeEEEecceecCCCHH--HHHHHHHHhcCCCcEEEEEEcccccc
Confidence 64 776 39999999999999885 99999999999999999999987775
No 18
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.42 E-value=3.5e-13 Score=111.15 Aligned_cols=97 Identities=26% Similarity=0.405 Sum_probs=84.9
Q ss_pred CcceEEEecCCccHHHHHHH-HhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCCCC----C-Cceeeeh
Q 021707 160 GVKRLVDVGGSAGDCLRMIL-QKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNSIP----A-ANAIFMK 226 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~~p----~-~D~i~~~ 226 (309)
+..+|||+|||+|.++..++ +.+|..+ ++++|. +.+++.+++ .+++++..+|+.+ ++ . .|+|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~-i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAK-IIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSE-EEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCE-EEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence 46799999999999999999 5688999 999998 778888765 2689999999988 33 3 5999999
Q ss_pred hhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707 227 WVLATWTDDECKLIMENCYKALLAGGKLIACEPV 260 (309)
Q Consensus 227 ~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~ 260 (309)
.++|++++.+ .+|+++++.|+|+|.+++.+..
T Consensus 81 ~~l~~~~~~~--~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDPE--KVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHHH--HHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCHH--HHHHHHHHHcCCCcEEEEEECC
Confidence 9999999874 8999999999999999999988
No 19
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.41 E-value=4.8e-13 Score=100.34 Aligned_cols=88 Identities=22% Similarity=0.389 Sum_probs=73.2
Q ss_pred EEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC---CCCceEEeCCCCCC-CCC-C-ceeeehhhhhcCChhHH
Q 021707 165 VDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS---IPGVTHIGGDMFNS-IPA-A-NAIFMKWVLATWTDDEC 237 (309)
Q Consensus 165 lDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~---~~ri~~~~~d~~~~-~p~-~-D~i~~~~vlh~~~d~~~ 237 (309)
||+|||+|..+..++++ +..+ ++++|. +.+++.+++ ..+++++.+|+.+. +|. . |+|++.+++|+++ +.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~-v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~--~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGAS-VTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE--DP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCE-EEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSS--HH
T ss_pred CEecCcCCHHHHHHHhc-cCCE-EEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeecc--CH
Confidence 79999999999999999 8888 999998 566776654 36677999998775 554 3 9999999999994 44
Q ss_pred HHHHHHHHHhcCCCcEEEE
Q 021707 238 KLIMENCYKALLAGGKLIA 256 (309)
Q Consensus 238 ~~iL~~~~~aL~pgG~l~i 256 (309)
.+++++++++|||||+++|
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 7999999999999999986
No 20
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.40 E-value=8.4e-14 Score=106.32 Aligned_cols=87 Identities=24% Similarity=0.350 Sum_probs=60.0
Q ss_pred EEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------C---CceEEeCCCCCCCC--CCceeeehhhhhcC
Q 021707 165 VDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------P---GVTHIGGDMFNSIP--AANAIFMKWVLATW 232 (309)
Q Consensus 165 lDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~---ri~~~~~d~~~~~p--~~D~i~~~~vlh~~ 232 (309)
||||||+|.++..+++.+|..+ ++++|. +.+++.++++ . ++++...|.++..+ ..|+|++.+++|++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~-~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDAR-YTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEE-EEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 7999999999999999999999 999998 7888888764 2 34555555554433 35999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCCcEE
Q 021707 233 TDDECKLIMENCYKALLAGGKL 254 (309)
Q Consensus 233 ~d~~~~~iL~~~~~aL~pgG~l 254 (309)
++ ...+|+++++.|+|||+|
T Consensus 80 ~~--~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ED--IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S---HHHHHHHHTTT-TSS-EE
T ss_pred hh--HHHHHHHHHHHcCCCCCC
Confidence 44 469999999999999986
No 21
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.39 E-value=2.9e-12 Score=110.93 Aligned_cols=103 Identities=16% Similarity=0.240 Sum_probs=89.0
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-CCceEEeCCCCCCCCC--CceeeehhhhhcCC
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-PGVTHIGGDMFNSIPA--ANAIFMKWVLATWT 233 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-~ri~~~~~d~~~~~p~--~D~i~~~~vlh~~~ 233 (309)
..+..+|||||||+|.++..+++..|..+ ++++|. +.+++.++++ +++++..+|+.++++. .|+|++..+||+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~-v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKH-IYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCe-EEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCC
Confidence 34567899999999999999999889899 999998 7799988774 7789999999886554 39999999999998
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 234 DDECKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 234 d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
+++..++++++++++ ++.++|.|...+.
T Consensus 120 p~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 120 PDNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 888899999999997 4789999887654
No 22
>PLN02244 tocopherol O-methyltransferase
Probab=99.39 E-value=2.3e-12 Score=120.10 Aligned_cols=99 Identities=20% Similarity=0.209 Sum_probs=83.6
Q ss_pred CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC-CCC--Cceeeehh
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS-IPA--ANAIFMKW 227 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~-~p~--~D~i~~~~ 227 (309)
....+|||||||+|.++..+++++ +.+ ++++|+ +.+++.+++ .++++++.+|+.+. ++. .|+|++..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~-v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GAN-VKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECC
Confidence 456799999999999999999988 678 999998 666766543 15799999999764 444 49999999
Q ss_pred hhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707 228 VLATWTDDECKLIMENCYKALLAGGKLIACEPVL 261 (309)
Q Consensus 228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~ 261 (309)
++|++++. .++|++++++|+|||+++|.+...
T Consensus 195 ~~~h~~d~--~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 195 SGEHMPDK--RKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred chhccCCH--HHHHHHHHHHcCCCcEEEEEEecc
Confidence 99999876 589999999999999999988654
No 23
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.38 E-value=2.6e-12 Score=110.50 Aligned_cols=109 Identities=13% Similarity=0.084 Sum_probs=85.1
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC-CCC-C
Q 021707 149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS-IPA-A 220 (309)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~-~p~-~ 220 (309)
..+++.++ .....+|||+|||+|..+..++++ +.+ ++++|. +.+++.+++. -++++...|+... .++ .
T Consensus 20 ~~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~-V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 95 (195)
T TIGR00477 20 SAVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYD-VRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDY 95 (195)
T ss_pred HHHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCC
Confidence 34555654 445679999999999999999986 467 999998 6677765432 2467777787543 334 5
Q ss_pred ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707 221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL 261 (309)
Q Consensus 221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~ 261 (309)
|+|+++.++|++++++...++++++++|+|||++++.+...
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~ 136 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMD 136 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecc
Confidence 99999999999988888899999999999999988776544
No 24
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.36 E-value=3.5e-12 Score=108.19 Aligned_cols=120 Identities=19% Similarity=0.264 Sum_probs=100.7
Q ss_pred HHHHhhcCCcccHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-CCceEEeCCC
Q 021707 136 MRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-PGVTHIGGDM 213 (309)
Q Consensus 136 f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-~ri~~~~~d~ 213 (309)
|.++-...+.+. .+++..++ .....+|+|+|||+|.....|++++|+.. ++++|. +.|++.|+.. ++++|..+|+
T Consensus 8 Yl~F~~eRtRPa-~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~-i~GiDsS~~Mla~Aa~rlp~~~f~~aDl 84 (257)
T COG4106 8 YLQFEDERTRPA-RDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAV-ITGIDSSPAMLAKAAQRLPDATFEEADL 84 (257)
T ss_pred HHHHHHhccCcH-HHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCe-EeeccCCHHHHHHHHHhCCCCceecccH
Confidence 444444444443 56777776 77889999999999999999999999999 999998 8899998765 9999999999
Q ss_pred CCCCCC--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707 214 FNSIPA--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV 260 (309)
Q Consensus 214 ~~~~p~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~ 260 (309)
.+-.|+ .|+++.+-+||-++|- .++|.++...|.|||.|.+.=+-
T Consensus 85 ~~w~p~~~~dllfaNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 85 RTWKPEQPTDLLFANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred hhcCCCCccchhhhhhhhhhcccc--HHHHHHHHHhhCCCceEEEECCC
Confidence 776664 5999999999988876 69999999999999999887444
No 25
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.35 E-value=4.7e-12 Score=117.16 Aligned_cols=109 Identities=23% Similarity=0.302 Sum_probs=89.3
Q ss_pred HHhhcCCCC-CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC---CCceEEeCCCCCC-CCC--Cce
Q 021707 151 VLDSYNGFK-GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI---PGVTHIGGDMFNS-IPA--ANA 222 (309)
Q Consensus 151 ~~~~~~~~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~---~ri~~~~~d~~~~-~p~--~D~ 222 (309)
+++... +. ...+|||||||+|.++..+++.++..+ ++++|. +.+++.++++ .+++++.+|+.+. ++. .|+
T Consensus 104 ~l~~~~-l~~~~~~VLDLGcGtG~~~l~La~~~~~~~-VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDv 181 (340)
T PLN02490 104 ALEPAD-LSDRNLKVVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADR 181 (340)
T ss_pred HHhhcc-cCCCCCEEEEEecCCcHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeE
Confidence 444443 43 457999999999999999999988888 999998 6777777653 6799999998764 443 499
Q ss_pred eeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 223 IFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 223 i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
|++..++|++++.+ ++|+++++.|+|||++++.+...++
T Consensus 182 VIs~~~L~~~~d~~--~~L~e~~rvLkPGG~LvIi~~~~p~ 220 (340)
T PLN02490 182 YVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACLIGPVHPT 220 (340)
T ss_pred EEEcChhhhCCCHH--HHHHHHHHhcCCCcEEEEEEecCcc
Confidence 99999999999875 7899999999999999998766543
No 26
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.33 E-value=5.3e-12 Score=110.65 Aligned_cols=96 Identities=19% Similarity=0.251 Sum_probs=82.4
Q ss_pred eEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC-CCC-CceeeehhhhhcC
Q 021707 163 RLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS-IPA-ANAIFMKWVLATW 232 (309)
Q Consensus 163 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~-~p~-~D~i~~~~vlh~~ 232 (309)
+|||||||+|.++..+++.+|+.+ ++++|+ +.+++.+++ .++++++.+|+.+. .+. .|+|+...++|++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~-v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQ-LHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 799999999999999999999999 999998 556665543 26899999998654 444 4999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707 233 TDDECKLIMENCYKALLAGGKLIACEPVL 261 (309)
Q Consensus 233 ~d~~~~~iL~~~~~aL~pgG~l~i~e~~~ 261 (309)
++. ..+|+++++.|+|||++++.+...
T Consensus 81 ~~~--~~~l~~~~~~LkpgG~l~i~~~~~ 107 (224)
T smart00828 81 KDK--MDLFSNISRHLKDGGHLVLADFIA 107 (224)
T ss_pred CCH--HHHHHHHHHHcCCCCEEEEEEccc
Confidence 875 589999999999999999998764
No 27
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.33 E-value=1.9e-12 Score=99.26 Aligned_cols=88 Identities=19% Similarity=0.319 Sum_probs=71.7
Q ss_pred EEEecCCccHHHHHHHHhc---CCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC-CC--CCceeeeh-hhhh
Q 021707 164 LVDVGGSAGDCLRMILQKH---HFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS-IP--AANAIFMK-WVLA 230 (309)
Q Consensus 164 vlDvG~G~G~~~~~l~~~~---p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~-~p--~~D~i~~~-~vlh 230 (309)
|||+|||+|..+..+++.+ |+.+ ++++|+ +.+++.+++. .++++++.|+.+. ++ ..|+|++. .++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~-~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSR-VIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SE-EEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccce-EEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 7999999999999999997 5577 999998 7788777652 5899999999763 22 24999995 5599
Q ss_pred cCChhHHHHHHHHHHHhcCCCc
Q 021707 231 TWTDDECKLIMENCYKALLAGG 252 (309)
Q Consensus 231 ~~~d~~~~~iL~~~~~aL~pgG 252 (309)
++++++..++|+++++.|+|||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999997
No 28
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.32 E-value=9.5e-12 Score=121.14 Aligned_cols=110 Identities=17% Similarity=0.230 Sum_probs=90.6
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-----CCCceEEeCCCCCC-CCC--
Q 021707 149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-----IPGVTHIGGDMFNS-IPA-- 219 (309)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-----~~ri~~~~~d~~~~-~p~-- 219 (309)
..+++.+. ..+..+|||||||+|..+..+++.+ +.+ ++++|+ +.+++.+++ ..+++++.+|+++. +|.
T Consensus 256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~-v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVH-VVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCE-EEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence 34556654 6667899999999999999988876 778 999999 567776643 25799999999875 554
Q ss_pred CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
.|+|++..+++++++. .++|++++++|+|||++++.+.....
T Consensus 333 fD~I~s~~~l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~ 374 (475)
T PLN02336 333 FDVIYSRDTILHIQDK--PALFRSFFKWLKPGGKVLISDYCRSP 374 (475)
T ss_pred EEEEEECCcccccCCH--HHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 4999999999999876 48999999999999999999987654
No 29
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.29 E-value=1.7e-11 Score=111.68 Aligned_cols=109 Identities=15% Similarity=0.086 Sum_probs=85.6
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC-CCC-Cc
Q 021707 150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS-IPA-AN 221 (309)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~-~p~-~D 221 (309)
.++..++ ..+..+|||||||+|..+..+++. +.+ ++++|. +.+++.+++. -++++...|+.+. +++ .|
T Consensus 111 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~--g~~-V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD 186 (287)
T PRK12335 111 EVLEAVQ-TVKPGKALDLGCGQGRNSLYLALL--GFD-VTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYD 186 (287)
T ss_pred HHHHHhh-ccCCCCEEEeCCCCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCcc
Confidence 3445443 334569999999999999999886 467 999999 5666665432 3688888888664 444 49
Q ss_pred eeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707 222 AIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL 262 (309)
Q Consensus 222 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~ 262 (309)
+|++..++|++++++...++++++++|+|||++++++....
T Consensus 187 ~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~ 227 (287)
T PRK12335 187 FILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDT 227 (287)
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 99999999999988889999999999999999887765433
No 30
>PRK08317 hypothetical protein; Provisional
Probab=99.29 E-value=2.6e-11 Score=106.55 Aligned_cols=108 Identities=19% Similarity=0.243 Sum_probs=88.4
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCC-----CCCceEEeCCCCCC-CCC--
Q 021707 150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPS-----IPGVTHIGGDMFNS-IPA-- 219 (309)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~-----~~ri~~~~~d~~~~-~p~-- 219 (309)
.+++.++ .....+|||+|||+|.++..+++.+ |..+ ++++|. +..++.+++ ..++++..+|+.+. ++.
T Consensus 10 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~-v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 87 (241)
T PRK08317 10 RTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGR-VVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGS 87 (241)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcE-EEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCC
Confidence 3455554 6677899999999999999999998 7788 999998 566665543 26799999998753 443
Q ss_pred CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707 220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL 261 (309)
Q Consensus 220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~ 261 (309)
.|+|++.+++|++++. .++++++++.|+|||++++.++..
T Consensus 88 ~D~v~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~ 127 (241)
T PRK08317 88 FDAVRSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDW 127 (241)
T ss_pred ceEEEEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCC
Confidence 4999999999999876 578999999999999999998643
No 31
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.28 E-value=2e-11 Score=109.32 Aligned_cols=102 Identities=21% Similarity=0.200 Sum_probs=82.0
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC--CC-C
Q 021707 151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS--IP-A 219 (309)
Q Consensus 151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~--~p-~ 219 (309)
+++.++ +...+|||||||+|.++..+++. ..+ ++++|. +.+++.++++ ++++++.+|+.+. .+ .
T Consensus 37 ~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~-v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 37 LLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQ-VILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCE-EEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence 444442 34579999999999999999987 456 999999 7788877642 5789999988643 22 3
Q ss_pred -CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707 220 -ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP 259 (309)
Q Consensus 220 -~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~ 259 (309)
.|+|++..++|++++. .++|++++++|+|||++++...
T Consensus 112 ~fD~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 112 PVDLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred CCCEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEE
Confidence 4999999999999876 4899999999999999988643
No 32
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.27 E-value=2.5e-11 Score=112.19 Aligned_cols=111 Identities=15% Similarity=0.083 Sum_probs=84.4
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeech-hHHhhC-------CCCCCceEEeCCCCCC-CCC
Q 021707 149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP-EVVGEA-------PSIPGVTHIGGDMFNS-IPA 219 (309)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p-~~~~~a-------~~~~ri~~~~~d~~~~-~p~ 219 (309)
..++..++ .-.+.+|||||||+|.++..+++.++. + ++++|.+ .++..+ ....+++++.+|+.+. .+.
T Consensus 112 ~~l~~~l~-~l~g~~VLDIGCG~G~~~~~la~~g~~-~-V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~ 188 (322)
T PRK15068 112 DRVLPHLS-PLKGRTVLDVGCGNGYHMWRMLGAGAK-L-VVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALK 188 (322)
T ss_pred HHHHHhhC-CCCCCEEEEeccCCcHHHHHHHHcCCC-E-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcC
Confidence 34455554 334579999999999999999998765 5 9999983 344321 1135899999998653 333
Q ss_pred -CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 220 -ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 220 -~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
.|+|++..++|+..+. ..+|+++++.|+|||.+++.+.+.+.+
T Consensus 189 ~FD~V~s~~vl~H~~dp--~~~L~~l~~~LkpGG~lvl~~~~i~~~ 232 (322)
T PRK15068 189 AFDTVFSMGVLYHRRSP--LDHLKQLKDQLVPGGELVLETLVIDGD 232 (322)
T ss_pred CcCEEEECChhhccCCH--HHHHHHHHHhcCCCcEEEEEEEEecCC
Confidence 4999999999998876 479999999999999998877665544
No 33
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.27 E-value=3.4e-11 Score=117.21 Aligned_cols=113 Identities=21% Similarity=0.304 Sum_probs=92.1
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----CCCceEEeCCCCC---CCCC
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----IPGVTHIGGDMFN---SIPA 219 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~~ri~~~~~d~~~---~~p~ 219 (309)
...+++.++ .....+|||||||+|.++..+++.+. + ++++|. +.+++.+++ .++++++.+|+.+ ++|.
T Consensus 26 ~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~--~-v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 26 RPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAG--Q-VIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCC--E-EEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCC
Confidence 455666664 44567999999999999999998853 5 999998 667766542 3679999999864 2443
Q ss_pred --CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 220 --ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 220 --~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
.|+|++..++|++++++..++|+++++.|+|||++++.|.....+
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~ 148 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQS 148 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC
Confidence 499999999999999888999999999999999999999876654
No 34
>PLN03075 nicotianamine synthase; Provisional
Probab=99.27 E-value=2.1e-11 Score=110.25 Aligned_cols=98 Identities=15% Similarity=0.155 Sum_probs=79.1
Q ss_pred CCcceEEEecCCccHH--HHHHHHhcCCCceEEEeec-hhHHhhCCC--------CCCceEEeCCCCCCCC---CCceee
Q 021707 159 KGVKRLVDVGGSAGDC--LRMILQKHHFICEGINFDL-PEVVGEAPS--------IPGVTHIGGDMFNSIP---AANAIF 224 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~--~~~l~~~~p~~~~~~~~D~-p~~~~~a~~--------~~ri~~~~~d~~~~~p---~~D~i~ 224 (309)
..+.+|+|||||.|-+ ...+++.+|+.+ ++++|. +++++.|++ .+|++|+.+|..+..+ +.|+|+
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~-~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF 200 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTS-FHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVF 200 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEE
Confidence 3678999999998844 333445789999 999999 667766653 2689999999987532 359999
Q ss_pred ehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707 225 MKWVLATWTDDECKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 225 ~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e 258 (309)
+. ++|+|..++-.++|++++++|+|||.+++--
T Consensus 201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred Ee-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99 9999976666899999999999999998874
No 35
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.27 E-value=5.4e-11 Score=106.18 Aligned_cols=108 Identities=14% Similarity=0.174 Sum_probs=85.3
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-CCceEEeCCCCCC-CCC--Cce
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-PGVTHIGGDMFNS-IPA--ANA 222 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-~ri~~~~~d~~~~-~p~--~D~ 222 (309)
...+++.++ .....+|||+|||+|.++..+.+. ..+ ++++|+ +.+++.+++. ..+.++.+|+.+. ++. .|+
T Consensus 31 a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~ 106 (251)
T PRK10258 31 ADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQ-VTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDL 106 (251)
T ss_pred HHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEE
Confidence 344556664 445679999999999999888764 456 999999 7888888764 4568889998663 444 499
Q ss_pred eeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707 223 IFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL 261 (309)
Q Consensus 223 i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~ 261 (309)
|+.+.++|..++. .++|++++++|+|||.+++..+..
T Consensus 107 V~s~~~l~~~~d~--~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 107 AWSNLAVQWCGNL--STALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred EEECchhhhcCCH--HHHHHHHHHHcCCCeEEEEEeCCC
Confidence 9999999877665 589999999999999999986553
No 36
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.26 E-value=4.9e-11 Score=105.02 Aligned_cols=112 Identities=15% Similarity=0.207 Sum_probs=90.1
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC-CC
Q 021707 149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS-IP 218 (309)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~p 218 (309)
..++..+. .....+|+|||||+|.++..+++.+| +.+ ++++|. +.+++.++++ .+++++.+|+.+. .+
T Consensus 41 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 41 RKTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGE-VVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP 118 (239)
T ss_pred HHHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC
Confidence 34555554 44567999999999999999999998 678 999998 5666665442 5789999999764 33
Q ss_pred C--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 219 A--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 219 ~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
. .|+|++++++|++++. ..+|+++++.|+|||++++.|...+..
T Consensus 119 ~~~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~gG~li~~~~~~~~~ 164 (239)
T PRK00216 119 DNSFDAVTIAFGLRNVPDI--DKALREMYRVLKPGGRLVILEFSKPTN 164 (239)
T ss_pred CCCccEEEEecccccCCCH--HHHHHHHHHhccCCcEEEEEEecCCCc
Confidence 2 4999999999999876 588999999999999999998876654
No 37
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.26 E-value=3.3e-11 Score=113.05 Aligned_cols=108 Identities=15% Similarity=0.124 Sum_probs=86.3
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC---------CCceEEeCCCCCCCC
Q 021707 149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI---------PGVTHIGGDMFNSIP 218 (309)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~---------~ri~~~~~d~~~~~p 218 (309)
.-+++.++ .....+|||+|||+|..+..+++++|+.+ ++++|. +.+++.++++ .+++++..|.++..+
T Consensus 218 rllL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~-V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 218 RFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAK-VVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 34566665 33346999999999999999999999999 999999 4666666532 378999999987654
Q ss_pred C--Cceeeehhhhh---cCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707 219 A--ANAIFMKWVLA---TWTDDECKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 219 ~--~D~i~~~~vlh---~~~d~~~~~iL~~~~~aL~pgG~l~i~e 258 (309)
. .|+|+++-.+| .+++..+.++++.++++|+|||.++|+-
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3 49999975554 4566677899999999999999999983
No 38
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.25 E-value=4.3e-11 Score=109.82 Aligned_cols=111 Identities=15% Similarity=0.055 Sum_probs=84.6
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhC-------CCCCCceEEeCCCCCCC-C-
Q 021707 149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEA-------PSIPGVTHIGGDMFNSI-P- 218 (309)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a-------~~~~ri~~~~~d~~~~~-p- 218 (309)
..++..+. ..++.+|||||||+|.++..++..++. . ++++|. +.++..+ ....++++..+++.+.. .
T Consensus 111 ~~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~-v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~ 187 (314)
T TIGR00452 111 DRVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-S-LVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELY 187 (314)
T ss_pred HHHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-E-EEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCC
Confidence 44555554 444679999999999999999988764 6 999998 4454432 12367888888875432 2
Q ss_pred CCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 219 AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 219 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
..|+|++..++|++++. ...|++++++|+|||.|++.+.+.+.+
T Consensus 188 ~FD~V~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~ 231 (314)
T TIGR00452 188 AFDTVFSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGD 231 (314)
T ss_pred CcCEEEEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCc
Confidence 24999999999999877 489999999999999999987766543
No 39
>PRK06202 hypothetical protein; Provisional
Probab=99.25 E-value=6.9e-11 Score=104.35 Aligned_cols=101 Identities=16% Similarity=0.096 Sum_probs=79.3
Q ss_pred CCcceEEEecCCccHHHHHHHHh----cCCCceEEEeec-hhHHhhCCCC---CCceEEeCCCCC--CCCC-Cceeeehh
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQK----HHFICEGINFDL-PEVVGEAPSI---PGVTHIGGDMFN--SIPA-ANAIFMKW 227 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~~D~-p~~~~~a~~~---~ri~~~~~d~~~--~~p~-~D~i~~~~ 227 (309)
.+..+|||||||+|.++..+++. .|+.+ ++++|+ +.+++.+++. .++++..++... ..++ .|+|+++.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLE-VTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcE-EEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 45679999999999999888764 45678 999999 7888887654 456666654422 2223 49999999
Q ss_pred hhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707 228 VLATWTDDECKLIMENCYKALLAGGKLIACEPVLL 262 (309)
Q Consensus 228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~ 262 (309)
++|++++++..++|+++++.++ |.+++.|...+
T Consensus 138 ~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 138 FLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred eeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 9999999888899999999998 67777776654
No 40
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.25 E-value=1.8e-11 Score=112.78 Aligned_cols=96 Identities=9% Similarity=-0.011 Sum_probs=79.2
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC-CCC--Cceeeehhh
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS-IPA--ANAIFMKWV 228 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~p~--~D~i~~~~v 228 (309)
...+|||||||+|.++..+++ ++.+ ++++|. +.+++.++++ .+++++++|+.+. .+. .|+|++..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~-V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGAT-VTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCE-EEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 346899999999999998886 3667 999998 6777777532 4799999987543 232 599999999
Q ss_pred hhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707 229 LATWTDDECKLIMENCYKALLAGGKLIACEPV 260 (309)
Q Consensus 229 lh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~ 260 (309)
+|++++.+ .+|+++++.|+|||.++|....
T Consensus 208 LeHv~d~~--~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 208 IEHVANPA--EFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred HHhcCCHH--HHHHHHHHHcCCCcEEEEEECC
Confidence 99999874 8999999999999999998654
No 41
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.24 E-value=3.9e-11 Score=105.59 Aligned_cols=100 Identities=19% Similarity=0.162 Sum_probs=83.4
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--CCceEEeCCCCCC-CCC--CceeeehhhhhcCC
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--PGVTHIGGDMFNS-IPA--ANAIFMKWVLATWT 233 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--~ri~~~~~d~~~~-~p~--~D~i~~~~vlh~~~ 233 (309)
...+|||||||+|.++..+++.+|..+ ++++|. +.++..+++. ++++++.+|+.+. ++. .|+|++.+++|+..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAE-FIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCc-EEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc
Confidence 347899999999999999999999999 999998 5666655543 5799999998764 333 49999999999887
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707 234 DDECKLIMENCYKALLAGGKLIACEPVLL 262 (309)
Q Consensus 234 d~~~~~iL~~~~~aL~pgG~l~i~e~~~~ 262 (309)
+. .++|+++++.|+|||.+++.++...
T Consensus 113 ~~--~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 113 DL--SQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred CH--HHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 65 5899999999999999999865443
No 42
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.24 E-value=1.3e-11 Score=104.12 Aligned_cols=102 Identities=22% Similarity=0.318 Sum_probs=81.5
Q ss_pred hcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----CCCceEEeCCCCCCCCC--Cceeeeh
Q 021707 154 SYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----IPGVTHIGGDMFNSIPA--ANAIFMK 226 (309)
Q Consensus 154 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~~ri~~~~~d~~~~~p~--~D~i~~~ 226 (309)
.++ -....+++|+|||.|.++..|+.++- + .+++|. +..++.+++ .++|+++..|+-+..|. .|+|+++
T Consensus 38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd--~-LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 38 ALP-RRRYRRALEVGCSIGVLTERLAPRCD--R-LLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp HHT-TSSEEEEEEE--TTSHHHHHHGGGEE--E-EEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEE
T ss_pred hcC-ccccceeEecCCCccHHHHHHHHhhC--c-eEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEe
Confidence 454 55678999999999999999998873 3 899998 777877764 48999999999887776 3999999
Q ss_pred hhhhcCCh-hHHHHHHHHHHHhcCCCcEEEEecc
Q 021707 227 WVLATWTD-DECKLIMENCYKALLAGGKLIACEP 259 (309)
Q Consensus 227 ~vlh~~~d-~~~~~iL~~~~~aL~pgG~l~i~e~ 259 (309)
-++|++++ ++...+++++.++|+|||.+++...
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 99999986 6788899999999999999999876
No 43
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.23 E-value=4.6e-11 Score=102.00 Aligned_cols=103 Identities=19% Similarity=0.254 Sum_probs=81.7
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC-Cce
Q 021707 151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA-ANA 222 (309)
Q Consensus 151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~-~D~ 222 (309)
++..++ .....+|||||||+|.++..+++.+|+.+ ++++|. +.+++.++++ .+++++.+|.....+. .|+
T Consensus 23 ~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~ 100 (187)
T PRK08287 23 ALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQ-VTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADA 100 (187)
T ss_pred HHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCE
Confidence 345554 66678999999999999999999999999 999999 6777776542 5799999998655554 599
Q ss_pred eeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707 223 IFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV 260 (309)
Q Consensus 223 i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~ 260 (309)
|++....++ ...+++++++.|+|||++++....
T Consensus 101 v~~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 101 IFIGGSGGN-----LTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred EEECCCccC-----HHHHHHHHHHhcCCCeEEEEEEec
Confidence 998765543 246899999999999999886543
No 44
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.22 E-value=4.8e-11 Score=107.81 Aligned_cols=103 Identities=18% Similarity=0.285 Sum_probs=85.2
Q ss_pred CCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC-CCC--Cceeeeh
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-IPA--ANAIFMK 226 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-~p~--~D~i~~~ 226 (309)
.....+|||||||+|..+..+++.. ++.+ ++++|+ +.+++.++++ ++++++.+|+.+. ++. .|+|+..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~-v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGK-VIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence 4567899999999999888777764 5667 999998 7788877652 6899999998763 444 4999999
Q ss_pred hhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 227 WVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 227 ~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
.++|++++. .+++++++++|+|||++++.+.....
T Consensus 154 ~v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~ 188 (272)
T PRK11873 154 CVINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRG 188 (272)
T ss_pred CcccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccC
Confidence 999988876 47999999999999999999887654
No 45
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.20 E-value=1.2e-10 Score=101.43 Aligned_cols=112 Identities=17% Similarity=0.159 Sum_probs=89.9
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCC-CceEEEeec-hhHHhhCCC----CCCceEEeCCCCCC-CCC--
Q 021707 149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF-ICEGINFDL-PEVVGEAPS----IPGVTHIGGDMFNS-IPA-- 219 (309)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-p~~~~~a~~----~~ri~~~~~d~~~~-~p~-- 219 (309)
..+++... .....+|+|+|||+|.++..+++.+|. .+ ++++|. +.+++.+++ ..+++++.+|+.+. .+.
T Consensus 29 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~-~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 106 (223)
T TIGR01934 29 RRAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGK-VTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNS 106 (223)
T ss_pred HHHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCce-EEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCc
Confidence 34455543 446689999999999999999999987 67 999998 566666544 25799999999764 333
Q ss_pred CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
.|+|++++.+|+.++. ..+|+++++.|+|||++++.+...+..
T Consensus 107 ~D~i~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~ 149 (223)
T TIGR01934 107 FDAVTIAFGLRNVTDI--QKALREMYRVLKPGGRLVILEFSKPAN 149 (223)
T ss_pred EEEEEEeeeeCCcccH--HHHHHHHHHHcCCCcEEEEEEecCCCc
Confidence 4999999999988765 589999999999999999998875543
No 46
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.19 E-value=5e-11 Score=107.54 Aligned_cols=114 Identities=14% Similarity=0.060 Sum_probs=84.9
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeech-hHHhhCC----C---CCCceEEeCCCCCCCCC
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP-EVVGEAP----S---IPGVTHIGGDMFNSIPA 219 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p-~~~~~a~----~---~~ri~~~~~d~~~~~p~ 219 (309)
.+.+++.++ .+++.+|||||||-|.++..+++++ +++ ++++.++ +-.+.++ + .+++++...|+.+.-+.
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~-v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~ 127 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCH-VTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGK 127 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---E-EEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCC
Confidence 456777875 8889999999999999999999999 889 9999983 3333332 2 27899999998754444
Q ss_pred CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
.|.|+....+.++..+...++++++.+.|+|||++++.....++.
T Consensus 128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~ 172 (273)
T PF02353_consen 128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDP 172 (273)
T ss_dssp -SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--H
T ss_pred CCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccc
Confidence 699999999999998888999999999999999999988777664
No 47
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.19 E-value=8.9e-11 Score=96.86 Aligned_cols=97 Identities=24% Similarity=0.357 Sum_probs=74.6
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC-CCC--CceeeehhhhhcCC
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS-IPA--ANAIFMKWVLATWT 233 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~-~p~--~D~i~~~~vlh~~~ 233 (309)
.....+|||||||.|.++..+.+... + ++++|. +.+++. .++.....+.... .+. .|+|++..+||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~-~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--E-VTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--E-EEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--E-EEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcc
Confidence 35678999999999999999976644 7 999999 666666 2333333222222 222 49999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 234 DDECKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 234 d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
+. .++|+++++.|+|||++++.++....
T Consensus 93 d~--~~~l~~l~~~LkpgG~l~~~~~~~~~ 120 (161)
T PF13489_consen 93 DP--EEFLKELSRLLKPGGYLVISDPNRDD 120 (161)
T ss_dssp HH--HHHHHHHHHCEEEEEEEEEEEEBTTS
T ss_pred cH--HHHHHHHHHhcCCCCEEEEEEcCCcc
Confidence 75 69999999999999999999988643
No 48
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.18 E-value=1.4e-10 Score=103.79 Aligned_cols=115 Identities=15% Similarity=0.126 Sum_probs=98.7
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCCCCC
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNSIPA 219 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~~p~ 219 (309)
.+.+++.+. ++++.+|||||||-|.+++..+++| +++ ++++++ ++..+.+++ ..+|++.-.|+.+..+.
T Consensus 61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~-V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVT-VVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCE-EEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence 466788886 9999999999999999999999999 999 999999 444444433 26899999999765555
Q ss_pred CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707 220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS 265 (309)
Q Consensus 220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~ 265 (309)
.|-|+..-.++++..+.-...++++++.|+|||++++.....++.+
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~ 183 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQE 183 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcc
Confidence 7999999999999998889999999999999999999998887743
No 49
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.18 E-value=1.3e-10 Score=91.66 Aligned_cols=100 Identities=15% Similarity=0.195 Sum_probs=77.5
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCC---CCC-
Q 021707 151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNS---IPA- 219 (309)
Q Consensus 151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~---~p~- 219 (309)
+++.+. .....+|+|+|||+|.++..+++++|+.+ ++++|. +.+++.+++ ..+++++.+|.... .++
T Consensus 11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGR-VYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCce-EEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence 455554 55567999999999999999999999988 999998 566666543 26789998887542 223
Q ss_pred CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707 220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
.|+|++....+ ...++++++++.|+|||++++.
T Consensus 89 ~D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CCEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 59999876433 3458999999999999998874
No 50
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.18 E-value=2.3e-10 Score=100.13 Aligned_cols=123 Identities=12% Similarity=0.038 Sum_probs=87.2
Q ss_pred chHHHHHHHHhhcCCcccHHHHHhhcCC-CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC----
Q 021707 130 PEMNGLMRRAISGVSVPFMTSVLDSYNG-FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI---- 203 (309)
Q Consensus 130 ~~~~~~f~~~m~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~---- 203 (309)
+.....+...|......+...+++.+.. ..+..+|||||||+|.++..+++. +.+ ++++|. +.++..++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~-v~gvD~s~~~i~~a~~~~~~~ 100 (219)
T TIGR02021 24 GDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAI-VKAVDISEQMVQMARNRAQGR 100 (219)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHhc
Confidence 3333444444422222333444444421 345689999999999999999876 446 999998 7788777542
Q ss_pred ---CCceEEeCCCCCCCCCCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEE
Q 021707 204 ---PGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLI 255 (309)
Q Consensus 204 ---~ri~~~~~d~~~~~p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~ 255 (309)
.++++..+|+.+.....|+|++..+++++++++..++++++++.+++++.+.
T Consensus 101 ~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 101 DVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFT 155 (219)
T ss_pred CCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 4899999998664433599999999999988778899999999988665444
No 51
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.17 E-value=1.9e-10 Score=108.80 Aligned_cols=111 Identities=13% Similarity=0.023 Sum_probs=88.9
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC---CCceEEeCCCCCCCCCCceeee
Q 021707 150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI---PGVTHIGGDMFNSIPAANAIFM 225 (309)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~---~ri~~~~~d~~~~~p~~D~i~~ 225 (309)
.+++.++ ...+.+|||||||+|.++..+++.+ +.+ ++++|+ +.+++.++++ .++++...|+.+.....|+|+.
T Consensus 158 ~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~-V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs 234 (383)
T PRK11705 158 LICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVS-VVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVS 234 (383)
T ss_pred HHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEE
Confidence 4555654 6677899999999999999998876 678 999998 6777766543 3578888887543223599999
Q ss_pred hhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 226 KWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 226 ~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
..++++.++.....+++++++.|+|||++++.+...+.
T Consensus 235 ~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~ 272 (383)
T PRK11705 235 VGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNK 272 (383)
T ss_pred eCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCC
Confidence 99999998877789999999999999999998766553
No 52
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.17 E-value=7.6e-11 Score=99.17 Aligned_cols=98 Identities=19% Similarity=0.245 Sum_probs=79.0
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC--Cceeeehhhhh
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA--ANAIFMKWVLA 230 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~--~D~i~~~~vlh 230 (309)
...+|||+|||+|..+..+++++|+.+ ++++|. +.+++.++++ ..++++..|.++..+. .|+|+++-.+|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~-v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAK-VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEE-EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchh
Confidence 457899999999999999999999999 999998 6667666542 3499999999998663 49999998877
Q ss_pred cCCh---hHHHHHHHHHHHhcCCCcEEEEec
Q 021707 231 TWTD---DECKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 231 ~~~d---~~~~~iL~~~~~aL~pgG~l~i~e 258 (309)
.-.+ +-..++++.+++.|+|||+++++-
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 6654 346789999999999999997643
No 53
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.16 E-value=2e-10 Score=106.94 Aligned_cols=109 Identities=15% Similarity=0.159 Sum_probs=85.5
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCCCCC-Cce
Q 021707 150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNSIPA-ANA 222 (309)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~~p~-~D~ 222 (309)
.+++.++ .....+|||+|||+|.++..+++++|+.+ ++++|. +.+++.++++ -..+++.+|.++..++ .|+
T Consensus 187 lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~-v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDl 264 (342)
T PRK09489 187 LLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIR-LTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDM 264 (342)
T ss_pred HHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccE
Confidence 3455554 33345899999999999999999999999 999998 5677766542 2457788898776554 499
Q ss_pred eeehhhhhcC---ChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707 223 IFMKWVLATW---TDDECKLIMENCYKALLAGGKLIACEPV 260 (309)
Q Consensus 223 i~~~~vlh~~---~d~~~~~iL~~~~~aL~pgG~l~i~e~~ 260 (309)
|+++..+|+. ......++++++.+.|+|||.++|+-.-
T Consensus 265 IvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 265 IISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred EEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 9999999864 2345689999999999999999987543
No 54
>PRK05785 hypothetical protein; Provisional
Probab=99.16 E-value=1.4e-10 Score=101.96 Aligned_cols=97 Identities=8% Similarity=0.050 Sum_probs=78.4
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC-CCC--CceeeehhhhhcCChh
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS-IPA--ANAIFMKWVLATWTDD 235 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~-~p~--~D~i~~~~vlh~~~d~ 235 (309)
...+|||||||+|.++..+++.+ +.+ ++++|. ++|++.+++. ..++.+|+.+. ++. .|+|++.+++|+++|.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~-v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~ 126 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYY-VVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI 126 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCE-EEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH
Confidence 35799999999999999999987 567 999999 7899988764 34677888653 444 3999999999999876
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 236 ECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 236 ~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
.+.|++++++|+| .+.++|...|+.
T Consensus 127 --~~~l~e~~RvLkp--~~~ile~~~p~~ 151 (226)
T PRK05785 127 --EKVIAEFTRVSRK--QVGFIAMGKPDN 151 (226)
T ss_pred --HHHHHHHHHHhcC--ceEEEEeCCCCc
Confidence 4899999999999 355667665543
No 55
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.16 E-value=4.9e-10 Score=97.62 Aligned_cols=101 Identities=11% Similarity=0.036 Sum_probs=82.1
Q ss_pred CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC------------------CCCCceEEeCCCCCCCC-
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP------------------SIPGVTHIGGDMFNSIP- 218 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~------------------~~~ri~~~~~d~~~~~p- 218 (309)
....+|||+|||.|..+..|+++ +.+ ++++|+ |..++.+. +..+|+++.+|+++..+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~-V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHR-VLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCe-EEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 45579999999999999999986 567 999999 55555431 12579999999998532
Q ss_pred ---CCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707 219 ---AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL 262 (309)
Q Consensus 219 ---~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~ 262 (309)
..|.|+-+.++|+++.++..+.++++.+.|+|||++++.-...+
T Consensus 110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~ 156 (213)
T TIGR03840 110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYD 156 (213)
T ss_pred cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcC
Confidence 24999999999999999999999999999999998777755443
No 56
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.15 E-value=8.1e-11 Score=100.00 Aligned_cols=91 Identities=18% Similarity=0.153 Sum_probs=72.4
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCCCC--CCceeeehhhhhc
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNSIP--AANAIFMKWVLAT 231 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~~p--~~D~i~~~~vlh~ 231 (309)
+.+|+|||||+|..+..++..+|+.+ ++++|. +.+++.+++ .++++++.+|+.+..+ ..|+|++.. +|+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~-V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~ 120 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELK-LTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS 120 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCe-EEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC
Confidence 57999999999999999999999999 999998 556555432 2579999999976422 259998866 543
Q ss_pred CChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707 232 WTDDECKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 232 ~~d~~~~~iL~~~~~aL~pgG~l~i~e 258 (309)
+ ..+++.+++.|+|||++++..
T Consensus 121 ~-----~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 121 L-----NVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred H-----HHHHHHHHHhcCCCCEEEEEc
Confidence 3 357888899999999999874
No 57
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.15 E-value=1.8e-10 Score=105.70 Aligned_cols=98 Identities=18% Similarity=0.267 Sum_probs=78.6
Q ss_pred CcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC--CCC-----C-ce
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS--IPA-----A-NA 222 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~--~p~-----~-D~ 222 (309)
...+|||+|||+|..+..|++..+ ..+ ++++|+ +++++.++++ -+|.++++|+.+. ++. . .+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~-~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPAR-YVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCe-EEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 446899999999999999999987 577 999999 5677666432 3467789999864 222 1 35
Q ss_pred eeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707 223 IFMKWVLATWTDDECKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 223 i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e 258 (309)
+++...+|+++++++.++|++++++|+|||.++|.-
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 666789999999999999999999999999888643
No 58
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.14 E-value=1.7e-10 Score=98.46 Aligned_cols=94 Identities=19% Similarity=0.158 Sum_probs=76.4
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC--Cceeeehhhhh
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA--ANAIFMKWVLA 230 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~--~D~i~~~~vlh 230 (309)
...+|||||||+|..+..+++.+|+.+ ++++|. +.+++.++++ ++++++.+|+.+..+. .|+|+++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~-V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELK-VTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCe-EEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc--
Confidence 468999999999999999999999999 999998 6777766542 4699999998764222 599998652
Q ss_pred cCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707 231 TWTDDECKLIMENCYKALLAGGKLIACEPV 260 (309)
Q Consensus 231 ~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~ 260 (309)
. ....+++++++.|+|||++++.+..
T Consensus 122 --~--~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 122 --A--SLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred --c--CHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 2 2357999999999999999988644
No 59
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.13 E-value=6.5e-11 Score=103.49 Aligned_cols=97 Identities=15% Similarity=0.061 Sum_probs=81.8
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------------CCceEEeCCCCCCCCCCceeeehh
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------------PGVTHIGGDMFNSIPAANAIFMKW 227 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------------~ri~~~~~d~~~~~p~~D~i~~~~ 227 (309)
+.+|||||||.|.++.-|++.. .+ ++++|. +.+++.|+++ .|+++.+.|.....+..|+|+++-
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~-V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQ-VTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhC--Ce-eEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence 3679999999999999999886 55 999998 6788887653 257788877766666689999999
Q ss_pred hhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707 228 VLATWTDDECKLIMENCYKALLAGGKLIACEPVLL 262 (309)
Q Consensus 228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~ 262 (309)
+++|..|. ..+++.+.+.|+|||+++|......
T Consensus 167 vleHV~dp--~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 167 VLEHVKDP--QEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred HHHHHhCH--HHHHHHHHHHhCCCCceEeeehhhh
Confidence 99999877 4899999999999999999886544
No 60
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.11 E-value=2.5e-10 Score=97.21 Aligned_cols=108 Identities=15% Similarity=0.123 Sum_probs=81.5
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeech-hHHhhCC-----CCCCceEEeCCCCCC-CCCC-
Q 021707 149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP-EVVGEAP-----SIPGVTHIGGDMFNS-IPAA- 220 (309)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p-~~~~~a~-----~~~ri~~~~~d~~~~-~p~~- 220 (309)
+.+++..+ .-+..++||+|||.|+.+.-|+++ +.. ++++|.+ ..++.++ +.-.|+....|+.+. +++.
T Consensus 20 s~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~-VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y 95 (192)
T PF03848_consen 20 SEVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFD-VTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY 95 (192)
T ss_dssp HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-E-EEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred HHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence 45666665 556789999999999999999998 556 9999983 3343332 123488899998765 5554
Q ss_pred ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707 221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV 260 (309)
Q Consensus 221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~ 260 (309)
|+|+...++++++.+...++++++.++++|||.+++...+
T Consensus 96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 96 DFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp EEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred CEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEec
Confidence 9999999999999999999999999999999998886654
No 61
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.08 E-value=5.2e-10 Score=94.80 Aligned_cols=100 Identities=18% Similarity=0.273 Sum_probs=80.0
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCCCCC-CceeeehhhhhcC
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNSIPA-ANAIFMKWVLATW 232 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~~p~-~D~i~~~~vlh~~ 232 (309)
+..+|+|+|||+|.++..+++..+ + ++++|. |.+++.++++ .+++++.+|+++..+. .|+|+++..+|..
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--C-ILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPL 95 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--E-EEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCC
Confidence 346899999999999999999876 7 999998 7777766542 4688899998775444 5999998887766
Q ss_pred Chh-------------------HHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707 233 TDD-------------------ECKLIMENCYKALLAGGKLIACEPVLL 262 (309)
Q Consensus 233 ~d~-------------------~~~~iL~~~~~aL~pgG~l~i~e~~~~ 262 (309)
++. -..++|+++.+.|+|||++++++....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 532 135789999999999999999886555
No 62
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.07 E-value=2e-10 Score=99.61 Aligned_cols=99 Identities=17% Similarity=0.104 Sum_probs=79.3
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC---CC--ceEEeCCCCCC-C--CCCceeeehhhhh
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI---PG--VTHIGGDMFNS-I--PAANAIFMKWVLA 230 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~---~r--i~~~~~d~~~~-~--p~~D~i~~~~vlh 230 (309)
...+|||||||-|.++..+++.. .+ ++++|+ ++.++.|+.+ .. +.+.+....+. . ...|+|++..+|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~-VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--AS-VTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--Ce-eEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 35799999999999999999986 67 999998 7788888754 33 33555544332 2 2359999999999
Q ss_pred cCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 231 TWTDDECKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 231 ~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
|.++++ .++++|.+.+||||.+++.......
T Consensus 136 Hv~dp~--~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 136 HVPDPE--SFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred ccCCHH--HHHHHHHHHcCCCcEEEEeccccCH
Confidence 999996 5999999999999999998776443
No 63
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.07 E-value=4.5e-10 Score=97.16 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=78.5
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCC----CCC
Q 021707 151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNS----IPA 219 (309)
Q Consensus 151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~----~p~ 219 (309)
+.+.+. - ...+|||||||+|.++..+++.+|+.+ ++++|. +.+++.+++ .++++++.+|+.+. ++.
T Consensus 33 ~~~~~~-~-~~~~VLDiGcGtG~~~~~la~~~p~~~-v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~ 109 (202)
T PRK00121 33 WAELFG-N-DAPIHLEIGFGKGEFLVEMAKANPDIN-FIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPD 109 (202)
T ss_pred HHHHcC-C-CCCeEEEEccCCCHHHHHHHHHCCCcc-EEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCc
Confidence 444443 2 457899999999999999999999999 999998 667776653 26899999998321 333
Q ss_pred --CceeeehhhhhcCC------hhHHHHHHHHHHHhcCCCcEEEEec
Q 021707 220 --ANAIFMKWVLATWT------DDECKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 220 --~D~i~~~~vlh~~~------d~~~~~iL~~~~~aL~pgG~l~i~e 258 (309)
.|.|++.+..+... ......+|+++++.|+|||.+++..
T Consensus 110 ~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 110 GSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred cccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 49998865442111 1124689999999999999999874
No 64
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.07 E-value=1.3e-09 Score=95.24 Aligned_cols=102 Identities=12% Similarity=0.038 Sum_probs=81.3
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC------------------CCCCceEEeCCCCCCCC
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP------------------SIPGVTHIGGDMFNSIP 218 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~------------------~~~ri~~~~~d~~~~~p 218 (309)
..+..+|||+|||.|..+..|+++ +.+ ++++|+ +..++.+. ...+|++..+|+++..+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~--G~~-V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ--GHE-VLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC--CCe-EEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence 345579999999999999999986 667 999999 45555431 12579999999998632
Q ss_pred ----CCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707 219 ----AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL 262 (309)
Q Consensus 219 ----~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~ 262 (309)
..|+|+-+.++|+++.+...+.++++.+.|+|||++++.....+
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~ 159 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYP 159 (218)
T ss_pred ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeC
Confidence 24999999999999999999999999999999997655444333
No 65
>PRK04266 fibrillarin; Provisional
Probab=99.07 E-value=1.7e-09 Score=95.06 Aligned_cols=96 Identities=14% Similarity=0.210 Sum_probs=73.7
Q ss_pred hcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHh----hCCCCCCceEEeCCCCCC-----CCC-Cce
Q 021707 154 SYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVG----EAPSIPGVTHIGGDMFNS-----IPA-ANA 222 (309)
Q Consensus 154 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~----~a~~~~ri~~~~~d~~~~-----~p~-~D~ 222 (309)
.++ ..+..+|+|+|||+|.++..+++..+..+ ++++|. +.+++ .+++..+|.++.+|...+ +++ .|+
T Consensus 67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~-V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~ 144 (226)
T PRK04266 67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGV-VYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDV 144 (226)
T ss_pred hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCe-EEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCE
Confidence 344 66778999999999999999999987667 999998 55554 444457899999998653 233 488
Q ss_pred eeehhhhhcCChh-HHHHHHHHHHHhcCCCcEEEE
Q 021707 223 IFMKWVLATWTDD-ECKLIMENCYKALLAGGKLIA 256 (309)
Q Consensus 223 i~~~~vlh~~~d~-~~~~iL~~~~~aL~pgG~l~i 256 (309)
|+ |+.++. +...+|+++++.|+|||+++|
T Consensus 145 i~-----~d~~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 145 IY-----QDVAQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred EE-----ECCCChhHHHHHHHHHHHhcCCCcEEEE
Confidence 87 344433 334678999999999999999
No 66
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.05 E-value=3.6e-10 Score=97.11 Aligned_cols=97 Identities=13% Similarity=0.232 Sum_probs=74.9
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCC----CCC--Cceeeeh
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNS----IPA--ANAIFMK 226 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~----~p~--~D~i~~~ 226 (309)
...++||||||+|.++..+++++|+.+ ++++|. +.+++.+++ ..+++++.+|+.+. .+. .|.+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~-v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKN-FLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCC-EEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 346899999999999999999999999 999999 667766643 26899999998642 343 3888776
Q ss_pred hhhhcCChhH-------HHHHHHHHHHhcCCCcEEEEec
Q 021707 227 WVLATWTDDE-------CKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 227 ~vlh~~~d~~-------~~~iL~~~~~aL~pgG~l~i~e 258 (309)
+.. .|+... ...++++++++|+|||.|++..
T Consensus 95 ~pd-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 95 FPD-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCC-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 543 233221 1479999999999999998764
No 67
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=1.8e-09 Score=97.08 Aligned_cols=110 Identities=13% Similarity=0.104 Sum_probs=87.7
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC-
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA- 219 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~- 219 (309)
.+-+++.++ .....+|+|+|||.|.+++.+++.+|+.+ ++.+|. ...++.++++ .+..+...|.+++.+.
T Consensus 147 S~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~-vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~k 224 (300)
T COG2813 147 SRLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAK-LTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGK 224 (300)
T ss_pred HHHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCe-EEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccc
Confidence 345677776 44445999999999999999999999999 999998 4566666653 3336777888888555
Q ss_pred Cceeeehhhhhc---CChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707 220 ANAIFMKWVLAT---WTDDECKLIMENCYKALLAGGKLIACEP 259 (309)
Q Consensus 220 ~D~i~~~~vlh~---~~d~~~~~iL~~~~~aL~pgG~l~i~e~ 259 (309)
.|.|+++--+|. ....-+.+++++++++|++||.|.|+-.
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 699999999985 2334456999999999999999999866
No 68
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.01 E-value=1.5e-09 Score=94.08 Aligned_cols=99 Identities=15% Similarity=0.085 Sum_probs=76.0
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC
Q 021707 149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA 219 (309)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~ 219 (309)
..+++.++ .....+|||||||+|..+..+++..+ ..+ ++++|. +.+++.++++ .+++++.+|..+.++.
T Consensus 62 ~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~-V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~ 139 (205)
T PRK13944 62 AMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGK-VYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence 34555554 55668999999999999999998875 456 999998 6777666542 4689999999875442
Q ss_pred ---CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707 220 ---ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 220 ---~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
.|+|++...+++++ +++.+.|+|||++++.
T Consensus 140 ~~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 140 HAPFDAIIVTAAASTIP--------SALVRQLKDGGVLVIP 172 (205)
T ss_pred CCCccEEEEccCcchhh--------HHHHHhcCcCcEEEEE
Confidence 49999998877655 3577889999999874
No 69
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.00 E-value=2e-09 Score=90.22 Aligned_cols=104 Identities=21% Similarity=0.238 Sum_probs=84.4
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC---CCCC
Q 021707 151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS---IPAA 220 (309)
Q Consensus 151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~---~p~~ 220 (309)
.++.+. ..+..+++|||||+|..+.+.+..+|..+ ++.+|. ++.++..+++ ++++++.||.-+. .|..
T Consensus 26 ~ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~-v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~ 103 (187)
T COG2242 26 TLSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGR-VIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSP 103 (187)
T ss_pred HHHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCce-EEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCC
Confidence 456664 77788999999999999999999999999 999998 6666665543 8999999998665 3445
Q ss_pred ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707 221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL 262 (309)
Q Consensus 221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~ 262 (309)
|.||+.-. .....+|+.+.+.|+|||+|++.-..+.
T Consensus 104 daiFIGGg------~~i~~ile~~~~~l~~ggrlV~naitlE 139 (187)
T COG2242 104 DAIFIGGG------GNIEEILEAAWERLKPGGRLVANAITLE 139 (187)
T ss_pred CEEEECCC------CCHHHHHHHHHHHcCcCCeEEEEeecHH
Confidence 99999875 2345899999999999999998854444
No 70
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.99 E-value=2.8e-09 Score=93.63 Aligned_cols=90 Identities=17% Similarity=0.195 Sum_probs=72.6
Q ss_pred CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC-Cceeeehhhh
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA-ANAIFMKWVL 229 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~-~D~i~~~~vl 229 (309)
.+..+|||||||+|.++..+++.. .+ ++++|. +.+++.+++. +++++..+|+ +...+ .|+|++..++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~-v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~fD~v~~~~~l 137 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AK-VVASDISPQMVEEARERAPEAGLAGNITFEVGDL-ESLLGRFDTVVCLDVL 137 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc-hhccCCcCEEEEcchh
Confidence 446799999999999999999875 45 999998 6777776542 4799999994 33333 5999999999
Q ss_pred hcCChhHHHHHHHHHHHhcCCCc
Q 021707 230 ATWTDDECKLIMENCYKALLAGG 252 (309)
Q Consensus 230 h~~~d~~~~~iL~~~~~aL~pgG 252 (309)
|++++++..++++++.+.+++++
T Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 138 IHYPQEDAARMLAHLASLTRGSL 160 (230)
T ss_pred hcCCHHHHHHHHHHHHhhcCCeE
Confidence 99999988999999998765444
No 71
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.98 E-value=2.6e-09 Score=93.09 Aligned_cols=100 Identities=14% Similarity=0.166 Sum_probs=77.2
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA 219 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~ 219 (309)
...+++.++ ..+..+|||||||+|.++..+++.. ++.+ ++++|. +.+++.++++ .+++++.+|..+.++.
T Consensus 65 ~~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~-V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~ 142 (212)
T PRK13942 65 VAIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGK-VVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE 142 (212)
T ss_pred HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc
Confidence 445666665 7778899999999999999988875 4467 999998 6777776542 5799999998775432
Q ss_pred ---CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707 220 ---ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 220 ---~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
.|+|++....+..+ +.+.+.|+|||++++.
T Consensus 143 ~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 143 NAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEE
Confidence 49999877665443 4567789999999885
No 72
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.98 E-value=2.1e-09 Score=97.75 Aligned_cols=96 Identities=21% Similarity=0.205 Sum_probs=75.0
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC--Cceeeehh--
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA--ANAIFMKW-- 227 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~--~D~i~~~~-- 227 (309)
+..+|+|+|||+|.++..+++++|+.+ ++++|. +.+++.++++ ++++++.+|+++.++. .|+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~-v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAE-VDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 346899999999999999999999999 999999 6777777642 5799999999877654 49999751
Q ss_pred -----------hhhcCCh----------hHHHHHHHHHHHhcCCCcEEEE
Q 021707 228 -----------VLATWTD----------DECKLIMENCYKALLAGGKLIA 256 (309)
Q Consensus 228 -----------vlh~~~d----------~~~~~iL~~~~~aL~pgG~l~i 256 (309)
..++.|. +...++++++.+.|+|||++++
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1121111 1246889999999999998764
No 73
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.98 E-value=2.4e-09 Score=92.03 Aligned_cols=103 Identities=19% Similarity=0.197 Sum_probs=78.4
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC---CC-C
Q 021707 151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS---IP-A 219 (309)
Q Consensus 151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~---~p-~ 219 (309)
+++.++ .....+|+|+|||+|.++..+++..|+.+ ++++|. |.+++.++++ ++++++.+|..+. .. .
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~-V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGR-VIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 455554 56678999999999999999998889888 999999 7777776542 5799999988652 22 2
Q ss_pred CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707 220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL 261 (309)
Q Consensus 220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~ 261 (309)
.|.+++.. .....++++++++.|+|||++++.....
T Consensus 110 ~d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 110 PDRVCIEG------GRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred CCEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 36654421 2234689999999999999999986543
No 74
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.97 E-value=7.7e-09 Score=89.92 Aligned_cols=103 Identities=18% Similarity=0.254 Sum_probs=76.5
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeechhHHhhCCCCCCceEEeCCCCCC---------CCC-
Q 021707 151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNS---------IPA- 219 (309)
Q Consensus 151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~---------~p~- 219 (309)
+.+.+.-+.+..+|||||||+|.++..+++.. +..+ ++++|+.++ ...++++++.+|+.+. .+.
T Consensus 42 ~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~-V~aVDi~~~----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 42 IQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGR-VIACDILPM----DPIVGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred HHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCce-EEEEecccc----cCCCCcEEEecCCCChHHHHHHHHHhCCC
Confidence 34444323556799999999999999999987 4567 999999663 2346799999999873 222
Q ss_pred -CceeeehhhhhcCChh---------HHHHHHHHHHHhcCCCcEEEEec
Q 021707 220 -ANAIFMKWVLATWTDD---------ECKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 220 -~D~i~~~~vlh~~~d~---------~~~~iL~~~~~aL~pgG~l~i~e 258 (309)
.|+|++....|...+. ....+|+.+++.|+|||.+++..
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 4999987665544321 12578999999999999999974
No 75
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.94 E-value=4.3e-09 Score=98.63 Aligned_cols=105 Identities=17% Similarity=0.271 Sum_probs=79.1
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCC---CCCC
Q 021707 150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFN---SIPA 219 (309)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~---~~p~ 219 (309)
.+++.+. -.....+||||||+|.++..+++++|+.. ++++|. +.+++.+.+ ..++.++.+|+.. .+|.
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~-~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~ 190 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKL-FIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPS 190 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCC-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCC
Confidence 4555553 34456899999999999999999999999 999998 556555432 2689999999843 3554
Q ss_pred -C-ceeeehhhhhcCChhH-----HHHHHHHHHHhcCCCcEEEEe
Q 021707 220 -A-NAIFMKWVLATWTDDE-----CKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 220 -~-D~i~~~~vlh~~~d~~-----~~~iL~~~~~aL~pgG~l~i~ 257 (309)
. |.|++++.. .|+... ...+|+.++++|+|||.+.+.
T Consensus 191 ~s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 191 NSVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred CceeEEEEeCCC-CccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 3 888876432 344322 257899999999999999885
No 76
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.94 E-value=4.4e-09 Score=91.77 Aligned_cols=99 Identities=17% Similarity=0.172 Sum_probs=76.4
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCC--
Q 021707 149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIP-- 218 (309)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p-- 218 (309)
..+++.++ .....+|||||||+|.++..+++..+ +.+ ++++|. +.+++.++++ ++++++.+|..+..+
T Consensus 67 ~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~-V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~ 144 (215)
T TIGR00080 67 AMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGL-VVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPL 144 (215)
T ss_pred HHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCccc
Confidence 44566665 66778999999999999999999865 467 999997 7777776542 689999999976533
Q ss_pred -CCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707 219 -AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 219 -~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
..|+|++....+. +.+.+.+.|+|||++++.
T Consensus 145 ~~fD~Ii~~~~~~~--------~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 145 APYDRIYVTAAGPK--------IPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCCCEEEEcCCccc--------ccHHHHHhcCcCcEEEEE
Confidence 2599998765543 345578899999998874
No 77
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.93 E-value=4e-09 Score=93.80 Aligned_cols=97 Identities=21% Similarity=0.269 Sum_probs=74.9
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC--Cceeeehhhh-
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA--ANAIFMKWVL- 229 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~--~D~i~~~~vl- 229 (309)
...+|+|+|||+|.++..+++.+|+.+ ++++|. +.+++.++++ ++++++.+|+++.++. .|+|+++-..
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDAR-VTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCC
Confidence 346899999999999999999999999 999998 6677666532 5799999999886543 4999874322
Q ss_pred -----hcCChh------------------HHHHHHHHHHHhcCCCcEEEEe
Q 021707 230 -----ATWTDD------------------ECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 230 -----h~~~d~------------------~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
|.+... ....+++++.+.|+|||++++.
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 222211 1247899999999999998875
No 78
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.93 E-value=3.4e-09 Score=97.39 Aligned_cols=94 Identities=19% Similarity=0.188 Sum_probs=74.7
Q ss_pred ceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC--Cceeeehh----
Q 021707 162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA--ANAIFMKW---- 227 (309)
Q Consensus 162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~--~D~i~~~~---- 227 (309)
.+|+|+|||+|.++..+++.+|+.+ ++++|. +.+++.++++ ++|+++.+|+++.+|. .|+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~-V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAE-VDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 6899999999999999999999999 999999 7777776642 5799999999877654 49999751
Q ss_pred ---------hhhcCCh----------hHHHHHHHHHHHhcCCCcEEEE
Q 021707 228 ---------VLATWTD----------DECKLIMENCYKALLAGGKLIA 256 (309)
Q Consensus 228 ---------vlh~~~d----------~~~~~iL~~~~~aL~pgG~l~i 256 (309)
..++.|. +...++++++.+.|+|||++++
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1122221 2246899999999999998876
No 79
>PRK04457 spermidine synthase; Provisional
Probab=98.93 E-value=2.3e-09 Score=96.34 Aligned_cols=97 Identities=14% Similarity=0.183 Sum_probs=76.3
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC---CCC-Cceeeehh
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS---IPA-ANAIFMKW 227 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~---~p~-~D~i~~~~ 227 (309)
.+.+|||||||.|.++..+++.+|+.+ ++++|+ |.+++.+++ .+|++++.+|..+. .+. .|+|++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~-v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTR-QTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 457899999999999999999999999 999999 888887764 27899999998653 344 49998742
Q ss_pred hh-hcCChh-HHHHHHHHHHHhcCCCcEEEEe
Q 021707 228 VL-ATWTDD-ECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 228 vl-h~~~d~-~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
.- ...+.. ...++++++++.|+|||++++.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 11 112211 1368999999999999999986
No 80
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.92 E-value=2.6e-09 Score=96.60 Aligned_cols=90 Identities=19% Similarity=0.222 Sum_probs=71.4
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCC---ceEEEeec-hhHHhhCCCC-CCceEEeCCCCCC-CCC--Cceeeehhhhhc
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFI---CEGINFDL-PEVVGEAPSI-PGVTHIGGDMFNS-IPA--ANAIFMKWVLAT 231 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~~D~-p~~~~~a~~~-~ri~~~~~d~~~~-~p~--~D~i~~~~vlh~ 231 (309)
...+|||||||+|.++..+++.+|.. + ++++|+ +.+++.+++. +++++..+|..+. ++. .|+|+....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~-v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~--- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQ-LFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA--- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCe-EEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC---
Confidence 34689999999999999999988754 5 899998 6788877654 7899999998763 444 499986543
Q ss_pred CChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707 232 WTDDECKLIMENCYKALLAGGKLIACEP 259 (309)
Q Consensus 232 ~~d~~~~~iL~~~~~aL~pgG~l~i~e~ 259 (309)
+ ..+++++++|+|||+++++.+
T Consensus 161 -~-----~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 161 -P-----CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred -C-----CCHHHHHhhccCCCEEEEEeC
Confidence 1 246789999999999998754
No 81
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.90 E-value=8e-09 Score=94.02 Aligned_cols=94 Identities=18% Similarity=0.205 Sum_probs=74.2
Q ss_pred ceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC--Cceeeeh-----
Q 021707 162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA--ANAIFMK----- 226 (309)
Q Consensus 162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~--~D~i~~~----- 226 (309)
.+|+|+|||+|.++..++..+|+.+ ++++|. +.+++.++++ .+++++.+|++++.+. .|+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~-v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAE-VIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCC
Confidence 5899999999999999999999999 999998 6677766642 4699999999987654 4998875
Q ss_pred --------hhhhcCCh----------hHHHHHHHHHHHhcCCCcEEEE
Q 021707 227 --------WVLATWTD----------DECKLIMENCYKALLAGGKLIA 256 (309)
Q Consensus 227 --------~vlh~~~d----------~~~~~iL~~~~~aL~pgG~l~i 256 (309)
.+.++-|. +...++++++.+.|+|||.+++
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 12222221 2467899999999999997654
No 82
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.86 E-value=1.4e-08 Score=76.05 Aligned_cols=92 Identities=18% Similarity=0.181 Sum_probs=74.0
Q ss_pred eEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC------CCCCceEEeCCCCCCC---CC-Cceeeehhhhhc
Q 021707 163 RLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP------SIPGVTHIGGDMFNSI---PA-ANAIFMKWVLAT 231 (309)
Q Consensus 163 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~------~~~ri~~~~~d~~~~~---p~-~D~i~~~~vlh~ 231 (309)
+|+|+|||.|.++..+++ .+..+ ++++|. +..+..++ ...+++++.+|+.+.. +. .|++++...+++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGAR-VTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCE-EEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 589999999999999998 66777 999998 44444333 2378999999998763 22 499999999987
Q ss_pred CChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707 232 WTDDECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 232 ~~d~~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
+ .+...++++++.+.|+|||.+++.
T Consensus 79 ~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 5 456689999999999999999875
No 83
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.84 E-value=9.9e-09 Score=94.42 Aligned_cols=92 Identities=14% Similarity=0.050 Sum_probs=70.8
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----------CCceEEeCCCCCCCCCCceeeehh
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----------PGVTHIGGDMFNSIPAANAIFMKW 227 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----------~ri~~~~~d~~~~~p~~D~i~~~~ 227 (309)
+..+|||||||+|.++..+++. +.+ ++++|+ +.+++.++++ .++++..+|+.+.....|+|++..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~-V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAI-VSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence 3579999999999999999986 467 999999 6687766542 357888888754322359999999
Q ss_pred hhhcCChhHHHHHHHHHHHhcCCCcEEE
Q 021707 228 VLATWTDDECKLIMENCYKALLAGGKLI 255 (309)
Q Consensus 228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~ 255 (309)
++|++++++...+++.+.+ +.+++.++
T Consensus 221 vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred EEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 9999998877788888875 45555443
No 84
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.84 E-value=2.1e-08 Score=90.55 Aligned_cols=98 Identities=22% Similarity=0.286 Sum_probs=75.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCCCC-C-Cceeeehhh
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNSIP-A-ANAIFMKWV 228 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~~p-~-~D~i~~~~v 228 (309)
..+..+|+|+|||+|..+..+++.+|+.+ ++++|. +.+++.+++ ..+++++.+|++++.+ . .|+|+++-.
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~-v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npP 184 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAE-VTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPP 184 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCC
Confidence 34567899999999999999999999999 999998 566666553 2689999999988754 3 499987422
Q ss_pred h------hcCCh------------------hHHHHHHHHHHHhcCCCcEEEE
Q 021707 229 L------ATWTD------------------DECKLIMENCYKALLAGGKLIA 256 (309)
Q Consensus 229 l------h~~~d------------------~~~~~iL~~~~~aL~pgG~l~i 256 (309)
. +...+ +...++++++.+.|+|||++++
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 1 11111 1236789999999999999887
No 85
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.83 E-value=9.7e-09 Score=90.45 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=82.1
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCC---CC
Q 021707 151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSI---PA 219 (309)
Q Consensus 151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~---p~ 219 (309)
++..+-......+|+|+|||+|..+..+++++++++ ++++|+ +.+.+.|+++ +||++++.|+.+.. +.
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~-I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~ 113 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAK-IVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF 113 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCc-EEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc
Confidence 444443244578999999999999999999999999 999999 5666666542 89999999997642 22
Q ss_pred --CceeeehhhhhcCCh----------------hHHHHHHHHHHHhcCCCcEEEEec
Q 021707 220 --ANAIFMKWVLATWTD----------------DECKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 220 --~D~i~~~~vlh~~~d----------------~~~~~iL~~~~~aL~pgG~l~i~e 258 (309)
.|+|+++--.+.-.+ -....+++.+.+.|+|||++.++-
T Consensus 114 ~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 114 ASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred cccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 489998755443222 135688999999999999999874
No 86
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.82 E-value=2.2e-08 Score=86.24 Aligned_cols=98 Identities=14% Similarity=0.210 Sum_probs=75.2
Q ss_pred HhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC---C-C
Q 021707 152 LDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS---I-P 218 (309)
Q Consensus 152 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~---~-p 218 (309)
+..++ .....+|+|+|||+|.++..+++.. +..+ ++++|. +.+++.+++ .++++++.+|+.+. . +
T Consensus 33 l~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~-v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~ 110 (198)
T PRK00377 33 LSKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGK-VYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINE 110 (198)
T ss_pred HHHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCC
Confidence 34554 6677899999999999999998764 5678 999999 777776543 25789999998653 2 2
Q ss_pred CCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEE
Q 021707 219 AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIA 256 (309)
Q Consensus 219 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i 256 (309)
..|+|++.. ...+...+|+.+.+.|+|||++++
T Consensus 111 ~~D~V~~~~-----~~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 111 KFDRIFIGG-----GSEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CCCEEEECC-----CcccHHHHHHHHHHHcCCCcEEEE
Confidence 359998853 223446899999999999999986
No 87
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.81 E-value=7.3e-09 Score=89.05 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=73.8
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-----CCC-ceEEeCCCCCCCCC---Cceeeehhhh
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-----IPG-VTHIGGDMFNSIPA---ANAIFMKWVL 229 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-----~~r-i~~~~~d~~~~~p~---~D~i~~~~vl 229 (309)
+..+.||+|+|.|+.+..++... .+++.++|. +..++.|++ ..+ .++.+..+.+..|+ .|+|++.|++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 35789999999999999887554 333778886 777777763 234 34555444332343 3999999999
Q ss_pred hcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 230 ATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 230 h~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
-|++|++.++.|++|+++|+|+|.|+|-|.+...+
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~ 167 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG 167 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC
Confidence 99999999999999999999999999999887654
No 88
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.81 E-value=4.9e-08 Score=83.33 Aligned_cols=102 Identities=17% Similarity=0.258 Sum_probs=74.0
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeechhHHhhCCCCCCceEEeCCCCCC---------CCC-
Q 021707 151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNS---------IPA- 219 (309)
Q Consensus 151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~---------~p~- 219 (309)
+.+.+....++.+|||+|||+|.++..+++++ +..+ ++++|+.+.. ..++++++.+|+.+. .+.
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~-v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGR-VIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCce-EEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 33344334667899999999999999999887 5677 9999996532 346789999998653 233
Q ss_pred -Cceeeehhhhh---cCC------hhHHHHHHHHHHHhcCCCcEEEEe
Q 021707 220 -ANAIFMKWVLA---TWT------DDECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 220 -~D~i~~~~vlh---~~~------d~~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
.|+|++....| .|. .+...++|+++++.|+|||++++.
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 49999754322 111 122468999999999999999986
No 89
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.80 E-value=5.3e-08 Score=87.62 Aligned_cols=112 Identities=20% Similarity=0.212 Sum_probs=80.3
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeech-------hHHhhCC-CCCCceEEeCCCCCCCC-
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP-------EVVGEAP-SIPGVTHIGGDMFNSIP- 218 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p-------~~~~~a~-~~~ri~~~~~d~~~~~p- 218 (309)
.+.+...+..+ .+.+|+|||||.|.++.+++.+.|. .++++|.. ..++..- ...++.+.+.-+ +.+|
T Consensus 104 W~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~--~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgv-E~Lp~ 179 (315)
T PF08003_consen 104 WDRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAK--SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGV-EDLPN 179 (315)
T ss_pred HHHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCC--EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcch-hhccc
Confidence 45566666324 4579999999999999999998654 38999972 2223222 223445543322 3333
Q ss_pred -C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707 219 -A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS 265 (309)
Q Consensus 219 -~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~ 265 (309)
+ +|+|++..||+|..++ ...|+++++.|+|||.+++-..+.+.+.
T Consensus 180 ~~~FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~ 226 (315)
T PF08003_consen 180 LGAFDTVFSMGVLYHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDE 226 (315)
T ss_pred cCCcCEEEEeeehhccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCC
Confidence 2 4999999999999888 6899999999999998887777766654
No 90
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.79 E-value=5.3e-09 Score=81.88 Aligned_cols=94 Identities=23% Similarity=0.253 Sum_probs=73.0
Q ss_pred ceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC---CCC--Cceeeehhh
Q 021707 162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS---IPA--ANAIFMKWV 228 (309)
Q Consensus 162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~---~p~--~D~i~~~~v 228 (309)
.+|+|+|||+|.++..+++.. ..+ ++++|+ |..++.++. .++++++.+|+++. .+. .|+|+++-.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~-~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AAR-VTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCE-EEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCe-EEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 589999999999999999998 677 999999 666665543 27899999998763 333 499999866
Q ss_pred hhcCC------hhHHHHHHHHHHHhcCCCcEEEEe
Q 021707 229 LATWT------DDECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 229 lh~~~------d~~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
.+... .+...++++++.+.|+|||.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 65432 123568999999999999999876
No 91
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.76 E-value=3.8e-08 Score=86.71 Aligned_cols=95 Identities=16% Similarity=0.042 Sum_probs=74.6
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-----CCCceEEeCCCCCCC--C-C-Cceeeehhhh
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-----IPGVTHIGGDMFNSI--P-A-ANAIFMKWVL 229 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-----~~ri~~~~~d~~~~~--p-~-~D~i~~~~vl 229 (309)
+..+|||||||+|.++..+++. ..+ ++++|. +.+++.+++ ..+++++..|+.+.. + . .|+|++.+++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL--GAD-VTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCe-EEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 4678999999999999988876 457 999998 556665543 235777777765431 2 2 4999999999
Q ss_pred hcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707 230 ATWTDDECKLIMENCYKALLAGGKLIACEP 259 (309)
Q Consensus 230 h~~~d~~~~~iL~~~~~aL~pgG~l~i~e~ 259 (309)
++.++. ..+|+++.+.|+|||++++...
T Consensus 125 ~~~~~~--~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 125 EHVPDP--ASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hccCCH--HHHHHHHHHHcCCCcEEEEEec
Confidence 998876 4789999999999999998754
No 92
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.76 E-value=1.2e-08 Score=88.37 Aligned_cols=100 Identities=16% Similarity=0.224 Sum_probs=83.6
Q ss_pred ceEEEecCCccHHHHHHHHhcCC--CceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC-----CCC-C-ceeeeh
Q 021707 162 KRLVDVGGSAGDCLRMILQKHHF--ICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS-----IPA-A-NAIFMK 226 (309)
Q Consensus 162 ~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~-----~p~-~-D~i~~~ 226 (309)
.+|++||||.|....-+++.+|+ ++ +..+|. |..++..+++ .++.--..|+..+ .+. . |++.+.
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~-v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLK-VYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeE-EEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 38999999999999999999998 88 999998 7788877764 5566556676654 222 3 999999
Q ss_pred hhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707 227 WVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL 262 (309)
Q Consensus 227 ~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~ 262 (309)
++|...+++.-.+.++++++.|+|||.|+..|--.-
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence 999999999999999999999999999999875443
No 93
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.75 E-value=1.1e-07 Score=83.11 Aligned_cols=102 Identities=10% Similarity=-0.062 Sum_probs=84.0
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------------------CCCceEEeCCCCCCCC
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------------------IPGVTHIGGDMFNSIP 218 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------------------~~ri~~~~~d~~~~~p 218 (309)
..+..+|++.|||.|.-+..|++. +.+ ++++|+ +..++.+.+ ..+|++.++|+|+..+
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~--G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK--GVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC--CCc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence 344579999999999999999987 556 999999 445555311 2589999999998632
Q ss_pred ------CCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707 219 ------AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL 262 (309)
Q Consensus 219 ------~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~ 262 (309)
..|+|+=..+++.++++...+..+.+.+.|+|||+++++-...+
T Consensus 118 ~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~ 167 (226)
T PRK13256 118 IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD 167 (226)
T ss_pred cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence 24999999999999999999999999999999999998876544
No 94
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.75 E-value=2e-08 Score=84.95 Aligned_cols=101 Identities=17% Similarity=0.168 Sum_probs=74.4
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCce-EEeCCCCCC--CCCC--ceeeehhh
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVT-HIGGDMFNS--IPAA--NAIFMKWV 228 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~-~~~~d~~~~--~p~~--D~i~~~~v 228 (309)
...||+||||+|..-.- -..-|..+ +|.+|. |.|-+.+.+ ...+. |+.++..+. ++.+ |+|++..+
T Consensus 77 K~~vLEvgcGtG~Nfkf-y~~~p~~s-vt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKF-YPWKPINS-VTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred ccceEEecccCCCCccc-ccCCCCce-EEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 35689999999986521 11224556 999998 555544332 25666 777776543 3443 99999999
Q ss_pred hhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707 229 LATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS 265 (309)
Q Consensus 229 lh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~ 265 (309)
|....+. ++.|+++++.|+|||++++.|.+..+.+
T Consensus 155 LCSve~~--~k~L~e~~rlLRpgG~iifiEHva~~y~ 189 (252)
T KOG4300|consen 155 LCSVEDP--VKQLNEVRRLLRPGGRIIFIEHVAGEYG 189 (252)
T ss_pred EeccCCH--HHHHHHHHHhcCCCcEEEEEecccccch
Confidence 9866655 7999999999999999999999988875
No 95
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.74 E-value=3.8e-08 Score=84.50 Aligned_cols=100 Identities=18% Similarity=0.235 Sum_probs=70.4
Q ss_pred CcceEEEecCCccH----HHHHHHHhcC-----CCceEEEeec-hhHHhhCCCC--------------------------
Q 021707 160 GVKRLVDVGGSAGD----CLRMILQKHH-----FICEGINFDL-PEVVGEAPSI-------------------------- 203 (309)
Q Consensus 160 ~~~~vlDvG~G~G~----~~~~l~~~~p-----~~~~~~~~D~-p~~~~~a~~~-------------------------- 203 (309)
+.-+|...||++|. +++.+.+..+ +.+ +++.|+ +.+++.|++.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~-I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFR-ILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEE-EEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceE-EEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 56799999999997 3444444222 345 899998 6677776530
Q ss_pred --------CCceEEeCCCCCC-CC-C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707 204 --------PGVTHIGGDMFNS-IP-A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV 260 (309)
Q Consensus 204 --------~ri~~~~~d~~~~-~p-~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~ 260 (309)
.+|+|..+|..+. .+ . .|+|+|+|||-+|+++...+++++++++|+|||.|++...-
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence 5799999999983 22 2 49999999999999999999999999999999999987543
No 96
>PRK14967 putative methyltransferase; Provisional
Probab=98.74 E-value=5.2e-08 Score=85.53 Aligned_cols=102 Identities=14% Similarity=0.077 Sum_probs=73.3
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCCCCC--Cceeeehhhh
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNSIPA--ANAIFMKWVL 229 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~~p~--~D~i~~~~vl 229 (309)
.....+|||+|||+|.++..+++.. ..+ ++++|. +.+++.++++ .+++++.+|+.+..+. .|+|+++--.
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~-v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy 111 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG-AGS-VTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPY 111 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC-CCe-EEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCC
Confidence 4456799999999999999988763 346 999998 6667655542 3588999999776543 4999986322
Q ss_pred hcCCh-------------------hHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707 230 ATWTD-------------------DECKLIMENCYKALLAGGKLIACEPVL 261 (309)
Q Consensus 230 h~~~d-------------------~~~~~iL~~~~~aL~pgG~l~i~e~~~ 261 (309)
+.-++ ....++++++.+.|+|||+++++..-.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 11100 124578899999999999999865443
No 97
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.74 E-value=3.4e-08 Score=86.34 Aligned_cols=96 Identities=17% Similarity=0.067 Sum_probs=76.2
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC---CCC-Cceeeehhh
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS---IPA-ANAIFMKWV 228 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~---~p~-~D~i~~~~v 228 (309)
...+|||+|||+|.++..+++.. .+ ++++|. +.+++.++++ .++++...|+.+. .+. .|+|++.++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--AN-VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--Ce-EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 46799999999999999988764 45 899998 5666665442 2688888887543 223 499999999
Q ss_pred hhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707 229 LATWTDDECKLIMENCYKALLAGGKLIACEPV 260 (309)
Q Consensus 229 lh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~ 260 (309)
+|+..+.+ .+|+++++.|+|||.+++....
T Consensus 122 l~~~~~~~--~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 122 LEHVPDPQ--AFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred HHhCCCHH--HHHHHHHHhcCCCcEEEEEecC
Confidence 99998764 7999999999999999987653
No 98
>PTZ00146 fibrillarin; Provisional
Probab=98.73 E-value=1.4e-07 Score=85.29 Aligned_cols=95 Identities=17% Similarity=0.219 Sum_probs=73.5
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeechh-----HHhhCCCCCCceEEeCCCCCCC------CCCceeee
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDLPE-----VVGEAPSIPGVTHIGGDMFNSI------PAANAIFM 225 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~p~-----~~~~a~~~~ri~~~~~d~~~~~------p~~D~i~~ 225 (309)
+....+|||+|||+|.++..++.... .-+ ++++|+.+ +++.+++.++|.++.+|+..+. +..|+|++
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~-VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGV-VYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCE-EEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence 56678999999999999999999873 456 99999842 6666666689999999986541 22499987
Q ss_pred hhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707 226 KWVLATWTDDECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 226 ~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
... .++ +...++.++++.|+|||+++|.
T Consensus 209 Dva---~pd-q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 209 DVA---QPD-QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred eCC---Ccc-hHHHHHHHHHHhccCCCEEEEE
Confidence 764 133 4456667899999999999994
No 99
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.73 E-value=5.6e-08 Score=86.86 Aligned_cols=96 Identities=19% Similarity=0.187 Sum_probs=73.0
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC---CCceEEeCCCCCCCC----C-Cceeeehhhh--
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI---PGVTHIGGDMFNSIP----A-ANAIFMKWVL-- 229 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~---~ri~~~~~d~~~~~p----~-~D~i~~~~vl-- 229 (309)
..+|+|+|||+|.++..+++.+|..+ ++++|. +.+++.++++ .+++++.+|+++..+ . .|+|+++--.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~-v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIE-LHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 45899999999999999999999999 999999 7788777654 347899999987543 2 4998875321
Q ss_pred ----hcCChh------------------HHHHHHHHHHHhcCCCcEEEEe
Q 021707 230 ----ATWTDD------------------ECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 230 ----h~~~d~------------------~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
+..+++ -..++++++.+.|+|||++++.
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 111111 1358888899999999988865
No 100
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.72 E-value=6.7e-08 Score=84.08 Aligned_cols=97 Identities=18% Similarity=0.187 Sum_probs=72.9
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC---
Q 021707 150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA--- 219 (309)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~--- 219 (309)
.++..++ ..+..+|||||||+|.++..+++... + ++++|. +.+++.++++ .+++++.+|..+.++.
T Consensus 69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~-v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 144 (212)
T PRK00312 69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--R-VFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAP 144 (212)
T ss_pred HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--E-EEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCC
Confidence 4455554 66678999999999999987777653 6 899997 6676666542 5699999998776442
Q ss_pred CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707 220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e 258 (309)
.|+|++...++++ .+.+.+.|+|||++++.-
T Consensus 145 fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 145 FDRILVTAAAPEI--------PRALLEQLKEGGILVAPV 175 (212)
T ss_pred cCEEEEccCchhh--------hHHHHHhcCCCcEEEEEE
Confidence 4999998766544 345678999999998853
No 101
>PRK14968 putative methyltransferase; Provisional
Probab=98.72 E-value=7.5e-08 Score=81.63 Aligned_cols=99 Identities=17% Similarity=0.219 Sum_probs=73.9
Q ss_pred CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CC-ceEEeCCCCCCCCC--Cceeeehh
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PG-VTHIGGDMFNSIPA--ANAIFMKW 227 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~r-i~~~~~d~~~~~p~--~D~i~~~~ 227 (309)
.+..+|||+|||+|.++..+++. ..+ ++++|. +.+++.++++ ++ +.++.+|+.+.++. .|+|+++.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~ 98 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKK-VVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNP 98 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cce-EEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECC
Confidence 34568999999999999999988 567 999998 6677666432 22 89999999887554 49998765
Q ss_pred hhhcCC-------------------hhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707 228 VLATWT-------------------DDECKLIMENCYKALLAGGKLIACEPV 260 (309)
Q Consensus 228 vlh~~~-------------------d~~~~~iL~~~~~aL~pgG~l~i~e~~ 260 (309)
..+..+ .....++++++.+.|+|||.+++....
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 432211 122457899999999999999887543
No 102
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.71 E-value=4.5e-08 Score=89.30 Aligned_cols=96 Identities=19% Similarity=0.120 Sum_probs=70.8
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC-Cceeeehhhhh
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA-ANAIFMKWVLA 230 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~-~D~i~~~~vlh 230 (309)
...+|||||||+|.++..+++.. ..+ ++++|. |.+++.++++ .++.+..+|.....+. .|+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g-~~~-V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~- 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLG-AAK-VVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA- 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcC-CCe-EEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH-
Confidence 45799999999999998887653 446 999998 6677766542 4567776664333333 5999986543
Q ss_pred cCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707 231 TWTDDECKLIMENCYKALLAGGKLIACEPVLL 262 (309)
Q Consensus 231 ~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~ 262 (309)
....++++++++.|+|||++++......
T Consensus 236 ----~~l~~ll~~~~~~LkpgG~li~sgi~~~ 263 (288)
T TIGR00406 236 ----EVIKELYPQFSRLVKPGGWLILSGILET 263 (288)
T ss_pred ----HHHHHHHHHHHHHcCCCcEEEEEeCcHh
Confidence 2346899999999999999999876543
No 103
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.70 E-value=5.7e-08 Score=84.12 Aligned_cols=109 Identities=20% Similarity=0.293 Sum_probs=79.6
Q ss_pred HHHHHhhcC-CCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC----------------------
Q 021707 148 MTSVLDSYN-GFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI---------------------- 203 (309)
Q Consensus 148 ~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~---------------------- 203 (309)
.+..++.+. .|-....+|||||..|.++..+++.|-... ++++|+ +..+..|+++
T Consensus 45 ~D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~-iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~ 123 (288)
T KOG2899|consen 45 SDPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRR-ILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQ 123 (288)
T ss_pred CChhhhhccccccCcceeEeccCCcchhHHHHHHhhccce-eeEeeccHHHHHHHHHhccccccccccccCCCccccccc
Confidence 345666664 466788999999999999999999998777 999999 5566666542
Q ss_pred -------------------CCce-------EEeCCCCCC-CCCCceeee----hhhhhcCChhHHHHHHHHHHHhcCCCc
Q 021707 204 -------------------PGVT-------HIGGDMFNS-IPAANAIFM----KWVLATWTDDECKLIMENCYKALLAGG 252 (309)
Q Consensus 204 -------------------~ri~-------~~~~d~~~~-~p~~D~i~~----~~vlh~~~d~~~~~iL~~~~~aL~pgG 252 (309)
+++. +..-|+.+. .|+.|+|++ .||=-+|.|+-..++++++++.|.|||
T Consensus 124 ~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgG 203 (288)
T KOG2899|consen 124 FGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGG 203 (288)
T ss_pred cccccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCc
Confidence 0122 222234433 455688775 344457999999999999999999999
Q ss_pred EEEEe
Q 021707 253 KLIAC 257 (309)
Q Consensus 253 ~l~i~ 257 (309)
.|++-
T Consensus 204 iLvvE 208 (288)
T KOG2899|consen 204 ILVVE 208 (288)
T ss_pred EEEEc
Confidence 66553
No 104
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.69 E-value=5.7e-08 Score=83.34 Aligned_cols=86 Identities=17% Similarity=0.305 Sum_probs=66.9
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC---CCC--CceeeehhhhhcCC
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS---IPA--ANAIFMKWVLATWT 233 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~---~p~--~D~i~~~~vlh~~~ 233 (309)
...+|||||||+|.++..+++. ...+ ++++|. +.+++.+++ .+++++.+|+.+. ++. .|+|++++++|+++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~-~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE-KQVR-GYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-cCCc-EEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 4568999999999999888766 3567 899998 667766643 4688888888652 333 49999999999998
Q ss_pred hhHHHHHHHHHHHhcCC
Q 021707 234 DDECKLIMENCYKALLA 250 (309)
Q Consensus 234 d~~~~~iL~~~~~aL~p 250 (309)
+. .++|+++.+.+++
T Consensus 90 d~--~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 NP--EEILDEMLRVGRH 104 (194)
T ss_pred CH--HHHHHHHHHhCCe
Confidence 75 4788888887653
No 105
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.68 E-value=5.8e-08 Score=95.08 Aligned_cols=95 Identities=19% Similarity=0.174 Sum_probs=73.3
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC--Cceeeehh--h
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA--ANAIFMKW--V 228 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~--~D~i~~~~--v 228 (309)
..+|||+|||+|.++..+++.+|+.+ ++++|. +.+++.++++ ++++++.+|+++..+. .|+|+++- +
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~-v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNAN-VIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCe-EEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 46899999999999999999999999 999998 6777777642 5899999999876543 49999731 1
Q ss_pred h------------hcCCh----------hHHHHHHHHHHHhcCCCcEEEE
Q 021707 229 L------------ATWTD----------DECKLIMENCYKALLAGGKLIA 256 (309)
Q Consensus 229 l------------h~~~d----------~~~~~iL~~~~~aL~pgG~l~i 256 (309)
- .+.|. +-..++++++.+.|+|||.+++
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 1 11111 1245688899999999998875
No 106
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.68 E-value=6.8e-08 Score=86.29 Aligned_cols=93 Identities=20% Similarity=0.181 Sum_probs=67.2
Q ss_pred CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCCCceeeehhhhh
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPAANAIFMKWVLA 230 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~~D~i~~~~vlh 230 (309)
....+|+|||||+|.++..+++..+ .+ ++++|. |.+++.++++ +++++..+|. ..|+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~-v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~- 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KK-VLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA- 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-Ce-EEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH-
Confidence 3567999999999999998776554 36 999998 6777776653 2344433332 35998875332
Q ss_pred cCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 231 TWTDDECKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 231 ~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
+....+++++.+.|+|||++++......+
T Consensus 190 ----~~~~~l~~~~~~~LkpgG~lilsgi~~~~ 218 (250)
T PRK00517 190 ----NPLLELAPDLARLLKPGGRLILSGILEEQ 218 (250)
T ss_pred ----HHHHHHHHHHHHhcCCCcEEEEEECcHhh
Confidence 23467899999999999999998766543
No 107
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.68 E-value=6.8e-08 Score=91.27 Aligned_cols=99 Identities=18% Similarity=0.195 Sum_probs=74.1
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC-CCC---Cceeeehhhh
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS-IPA---ANAIFMKWVL 229 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~-~p~---~D~i~~~~vl 229 (309)
+..+|+|+|||+|.++..+++.+|+.+ ++++|. +.+++.++++ .+++++.+|+++. .|. .|+|+++-.-
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~-VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAF-VRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 446899999999999999999999999 999999 7788777653 4799999999875 332 4999985321
Q ss_pred hcC---------------------Ch--hHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707 230 ATW---------------------TD--DECKLIMENCYKALLAGGKLIACEPV 260 (309)
Q Consensus 230 h~~---------------------~d--~~~~~iL~~~~~aL~pgG~l~i~e~~ 260 (309)
..- .+ +-..++++.+.+.|+|||.++ +|.-
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~li-lEiG 382 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLL-LEHG 382 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEE-EEEC
Confidence 100 00 123478888889999999865 4443
No 108
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.68 E-value=2e-07 Score=79.76 Aligned_cols=106 Identities=16% Similarity=0.158 Sum_probs=76.5
Q ss_pred CCCcc-eEEEecCCccHHHHHHHHhcCCCceEEEeech-----hHHhhCCC--CCCc-eEEeCCCCCC---CC-------
Q 021707 158 FKGVK-RLVDVGGSAGDCLRMILQKHHFICEGINFDLP-----EVVGEAPS--IPGV-THIGGDMFNS---IP------- 218 (309)
Q Consensus 158 ~~~~~-~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p-----~~~~~a~~--~~ri-~~~~~d~~~~---~p------- 218 (309)
++... +||+||+|+|.++..+++++|+++ ----|.. .+.+-+.+ .+++ .-+..|..++ ++
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~-WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~ 100 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALPHLT-WQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSP 100 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCCCCE-EcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCC
Confidence 33444 599999999999999999999987 5444441 22221111 1221 1222344333 21
Q ss_pred C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 219 A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 219 ~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
. .|+|++.+++|-.+-+.+..+++.+.+.|+|||.|+++-++.-+.
T Consensus 101 ~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G 147 (204)
T PF06080_consen 101 ESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDG 147 (204)
T ss_pred CCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCC
Confidence 2 399999999999999999999999999999999999999998774
No 109
>PRK00811 spermidine synthase; Provisional
Probab=98.65 E-value=7.8e-08 Score=87.47 Aligned_cols=98 Identities=23% Similarity=0.272 Sum_probs=73.2
Q ss_pred CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-----------CCCceEEeCCCCCCC---CC-Cce
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-----------IPGVTHIGGDMFNSI---PA-ANA 222 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-----------~~ri~~~~~d~~~~~---p~-~D~ 222 (309)
+++.+||+||||.|..+.+++++.+..+ ++++|+ +.+++.+++ .+|++++.+|..+.. ++ .|+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~-V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEK-ITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCE-EEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 4567999999999999999997644556 999999 677777654 368999999987642 22 499
Q ss_pred eeehhhhhcCChh--HHHHHHHHHHHhcCCCcEEEEe
Q 021707 223 IFMKWVLATWTDD--ECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 223 i~~~~vlh~~~d~--~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
|++-..-+.-+.. -..++++.+++.|+|||.+++.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9975432222222 1367899999999999988875
No 110
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.62 E-value=1.5e-07 Score=81.64 Aligned_cols=91 Identities=19% Similarity=0.203 Sum_probs=69.3
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeC-------CCCCCC--CCC-ceeeehhhh
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGG-------DMFNSI--PAA-NAIFMKWVL 229 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~-------d~~~~~--p~~-D~i~~~~vl 229 (309)
...++|||||+|..+..+++.|.+ +++.|. +.++..++++++++.... ++.... ++. |+|++...+
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k~---VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYKE---VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhhh---heeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 348999999999888888877655 999998 789999998766555432 222222 344 999999999
Q ss_pred hcCChhHHHHHHHHHHHhcCCCc-EEEEe
Q 021707 230 ATWTDDECKLIMENCYKALLAGG-KLIAC 257 (309)
Q Consensus 230 h~~~d~~~~~iL~~~~~aL~pgG-~l~i~ 257 (309)
|-|.-+ ++.++++++|+++| .+.+.
T Consensus 111 HWFdle---~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 111 HWFDLE---RFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred HhhchH---HHHHHHHHHcCCCCCEEEEE
Confidence 988655 89999999999766 44443
No 111
>PHA03411 putative methyltransferase; Provisional
Probab=98.61 E-value=1.6e-07 Score=84.10 Aligned_cols=96 Identities=11% Similarity=0.115 Sum_probs=76.1
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-CCceEEeCCCCCCC-CC-CceeeehhhhhcCChhH
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-PGVTHIGGDMFNSI-PA-ANAIFMKWVLATWTDDE 236 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-~ri~~~~~d~~~~~-p~-~D~i~~~~vlh~~~d~~ 236 (309)
..+|||+|||+|.++..++++.+..+ ++++|. +.+++.++++ ++++++.+|+++.. +. .|+|+++-..++.+..+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~-V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEK-IVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence 46899999999999999999887788 999998 7788877664 78999999998753 23 59999987776654321
Q ss_pred ------------------HHHHHHHHHHhcCCCcEEEEe
Q 021707 237 ------------------CKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 237 ------------------~~~iL~~~~~aL~pgG~l~i~ 257 (309)
..+.++.....|+|+|.++++
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 245677778888999977665
No 112
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.60 E-value=9.6e-07 Score=78.89 Aligned_cols=100 Identities=21% Similarity=0.267 Sum_probs=81.1
Q ss_pred CCcceEEEecCCccHHHHHHHHhcCC--CceEEEeec-hhHHhhCCC------CCC-ceEEeCCCCCC------CCCCce
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQKHHF--ICEGINFDL-PEVVGEAPS------IPG-VTHIGGDMFNS------IPAANA 222 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~~D~-p~~~~~a~~------~~r-i~~~~~d~~~~------~p~~D~ 222 (309)
..+.+||||.||+|.+....++.+|. .+ +...|. |..++..++ ... ++|..+|.|+. .|..++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~-i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDS-ILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCce-EEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 35789999999999999999999998 56 899998 555555543 244 49999999975 233499
Q ss_pred eeehhhhhcCChhH-HHHHHHHHHHhcCCCcEEEEecc
Q 021707 223 IFMKWVLATWTDDE-CKLIMENCYKALLAGGKLIACEP 259 (309)
Q Consensus 223 i~~~~vlh~~~d~~-~~~iL~~~~~aL~pgG~l~i~e~ 259 (309)
++.+-....|+|.+ +.+.|+.+++++.|||.++-.-.
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQ 250 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQ 250 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCC
Confidence 99999999999987 44579999999999998877643
No 113
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.60 E-value=1.6e-07 Score=86.66 Aligned_cols=101 Identities=17% Similarity=0.266 Sum_probs=74.8
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCC-CceEEEeec-hhHHhhCCC------CCCceEEeCCCCCCCCC-
Q 021707 149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF-ICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNSIPA- 219 (309)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~~p~- 219 (309)
..+++.++ .++..+|||||||+|.++..+++.++. .+ ++++|. +.+++.+++ .++++++.+|..+..+.
T Consensus 70 a~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~-VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~ 147 (322)
T PRK13943 70 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGL-VVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF 147 (322)
T ss_pred HHHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc
Confidence 34455554 566789999999999999999998864 46 899998 677766654 26799999998765332
Q ss_pred --CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707 220 --ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP 259 (309)
Q Consensus 220 --~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~ 259 (309)
.|+|++...++..+ ..+.+.|+|||++++...
T Consensus 148 ~~fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 148 APYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred CCccEEEECCchHHhH--------HHHHHhcCCCCEEEEEeC
Confidence 49999876554433 346678999999888543
No 114
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.58 E-value=2.9e-07 Score=83.48 Aligned_cols=97 Identities=19% Similarity=0.140 Sum_probs=76.3
Q ss_pred cceEEEecCCccH----HHHHHHHhcC----CCceEEEeec-hhHHhhCCCC----------------------------
Q 021707 161 VKRLVDVGGSAGD----CLRMILQKHH----FICEGINFDL-PEVVGEAPSI---------------------------- 203 (309)
Q Consensus 161 ~~~vlDvG~G~G~----~~~~l~~~~p----~~~~~~~~D~-p~~~~~a~~~---------------------------- 203 (309)
..+|...||++|. +++.+.+..+ +.+ +++.|+ +.+++.|++.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~-I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWK-VFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcE-EEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 4799999999997 4444445433 356 899998 5566555320
Q ss_pred ---------CCceEEeCCCCCC-CC--C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707 204 ---------PGVTHIGGDMFNS-IP--A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 204 ---------~ri~~~~~d~~~~-~p--~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e 258 (309)
.+|+|..+|..++ +| . .|+|+|++++.+|+++...+++++++++|+|||.|++..
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 4689999999884 44 3 499999999999999999999999999999999988765
No 115
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=4.1e-07 Score=77.99 Aligned_cols=100 Identities=18% Similarity=0.225 Sum_probs=80.3
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC-
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA- 219 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~- 219 (309)
...+++.++ .+...+||+||||+|..+.-+++.-- + ++.+|. +...+.|+++ .+|+++.+|-..-+|+
T Consensus 61 vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~-V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 61 VARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--R-VVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--e-EEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 345677775 88889999999999999999988765 5 899998 7777777653 6799999999887776
Q ss_pred C--ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707 220 A--NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP 259 (309)
Q Consensus 220 ~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~ 259 (309)
+ |.|+..-..-..|+. +.+.|+|||++++-..
T Consensus 137 aPyD~I~Vtaaa~~vP~~--------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEVPEA--------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCCCHH--------HHHhcccCCEEEEEEc
Confidence 3 999988776656654 5567999999998766
No 116
>PLN02366 spermidine synthase
Probab=98.56 E-value=2.3e-07 Score=85.15 Aligned_cols=100 Identities=22% Similarity=0.208 Sum_probs=72.3
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------CCCceEEeCCCCCC---CC-C-Cc
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------IPGVTHIGGDMFNS---IP-A-AN 221 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------~~ri~~~~~d~~~~---~p-~-~D 221 (309)
.+++.+||+||||.|..+.+++++ |...+++++|+ +.+++.+++ .+|++++.+|.++. .+ + .|
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence 345789999999999999999866 65433999998 557776654 26999999997543 33 2 49
Q ss_pred eeeehhhhhcCChh--HHHHHHHHHHHhcCCCcEEEEec
Q 021707 222 AIFMKWVLATWTDD--ECKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 222 ~i~~~~vlh~~~d~--~~~~iL~~~~~aL~pgG~l~i~e 258 (309)
+|++-..-+.-+.. -..++++.+++.|+|||.+++.-
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 99874322221211 13578999999999999987643
No 117
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.54 E-value=6.2e-07 Score=79.30 Aligned_cols=99 Identities=14% Similarity=0.130 Sum_probs=75.5
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCC---------CC
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSI---------PA 219 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~---------p~ 219 (309)
..+..+|||||||+|..+..+++..| +.+ ++.+|. ++.++.++++ ++|+++.+|..+.+ +.
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~-v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~ 144 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGR-ITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPE 144 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence 34578999999999999999998865 567 999998 6666666542 68999999997631 12
Q ss_pred CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707 220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL 262 (309)
Q Consensus 220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~ 262 (309)
.|+|++- -....-...+..+.+.|+|||.|++-+.++.
T Consensus 145 fD~VfiD-----a~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~ 182 (234)
T PLN02781 145 FDFAFVD-----ADKPNYVHFHEQLLKLVKVGGIIAFDNTLWF 182 (234)
T ss_pred CCEEEEC-----CCHHHHHHHHHHHHHhcCCCeEEEEEcCCcC
Confidence 4998873 2334556889999999999998777655543
No 118
>PRK01581 speE spermidine synthase; Validated
Probab=98.54 E-value=2.5e-07 Score=85.84 Aligned_cols=100 Identities=16% Similarity=0.133 Sum_probs=74.2
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------------CCCceEEeCCCCCCC---CC-
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------------IPGVTHIGGDMFNSI---PA- 219 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------------~~ri~~~~~d~~~~~---p~- 219 (309)
..++.+||+||||.|..+.++++..+..+ ++++|+ |.|++.+++ .+|++++.+|..+.. +.
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~-It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLH-VDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence 34567999999999999999997655567 999999 778887763 279999999987642 22
Q ss_pred Cceeeehhhhh---cCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707 220 ANAIFMKWVLA---TWTDDECKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 220 ~D~i~~~~vlh---~~~d~~~~~iL~~~~~aL~pgG~l~i~e 258 (309)
.|+|++-..-. .....-..++++.+++.|+|||.+++..
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 49999763110 0111223678999999999999988773
No 119
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.53 E-value=9.2e-08 Score=82.97 Aligned_cols=103 Identities=17% Similarity=0.262 Sum_probs=74.9
Q ss_pred cHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCC
Q 021707 147 FMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIP 218 (309)
Q Consensus 147 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p 218 (309)
....+++.++ ..+..+|||||||+|.++..++.... .-+ ++.+|. +.+++.++++ .+|+++.+|....+|
T Consensus 60 ~~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~-Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 60 MVARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGR-VVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP 137 (209)
T ss_dssp HHHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEE-EEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG
T ss_pred HHHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccce-EEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc
Confidence 3455777876 88889999999999999999998753 445 889997 7777777653 689999999877665
Q ss_pred C---CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707 219 A---ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP 259 (309)
Q Consensus 219 ~---~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~ 259 (309)
. .|.|++.......|.. +.+.|++||++++--.
T Consensus 138 ~~apfD~I~v~~a~~~ip~~--------l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 138 EEAPFDRIIVTAAVPEIPEA--------LLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GG-SEEEEEESSBBSS--HH--------HHHTEEEEEEEEEEES
T ss_pred cCCCcCEEEEeeccchHHHH--------HHHhcCCCcEEEEEEc
Confidence 4 3999998877555432 5667999999997533
No 120
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.52 E-value=1.9e-07 Score=81.65 Aligned_cols=102 Identities=18% Similarity=0.162 Sum_probs=79.7
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC----C--------------CCCceEEeCCCCCCCC
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP----S--------------IPGVTHIGGDMFNSIP 218 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~----~--------------~~ri~~~~~d~~~~~p 218 (309)
.....+||+.|||.|.-+..|+++ +.+ ++++|+ +..++.+. . ..+|++.++|+|+.-+
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~-VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHD-VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEE-EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCe-EEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 456679999999999999999987 457 999999 45565541 0 1578999999998533
Q ss_pred C----CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707 219 A----ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL 262 (309)
Q Consensus 219 ~----~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~ 262 (309)
. .|+|+=...++-++++...+-.+.+++.|+|||+++++-...+
T Consensus 112 ~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~ 159 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYP 159 (218)
T ss_dssp SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-
T ss_pred hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcC
Confidence 2 4999999999999999999999999999999999554444433
No 121
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=3e-07 Score=83.42 Aligned_cols=99 Identities=20% Similarity=0.269 Sum_probs=74.4
Q ss_pred eEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC-Cceeeeh--hhhhc-
Q 021707 163 RLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA-ANAIFMK--WVLAT- 231 (309)
Q Consensus 163 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~-~D~i~~~--~vlh~- 231 (309)
+|+|+|||+|..++.++.++|+.+ +++.|+ |..++.|+++ .++.++.+|+|+..++ .|+|+++ ++-..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~-V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~ 191 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAE-VIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAED 191 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCe-EEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCcc
Confidence 799999999999999999999999 999999 7788777653 5567777799988665 5988865 22221
Q ss_pred ----------------CCh----hHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 232 ----------------WTD----DECKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 232 ----------------~~d----~~~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
+.. +-..+++.++.+.|+|||.+ ++|.-...
T Consensus 192 ~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l-~le~g~~q 242 (280)
T COG2890 192 PELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVL-ILEIGLTQ 242 (280)
T ss_pred cccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEE-EEEECCCc
Confidence 000 24678899999999997754 45544443
No 122
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.51 E-value=1.6e-06 Score=77.84 Aligned_cols=99 Identities=17% Similarity=0.193 Sum_probs=81.8
Q ss_pred CcceEEEecCCccH----HHHHHHHhcCC-----CceEEEeec-hhHHhhCCCC--------------------------
Q 021707 160 GVKRLVDVGGSAGD----CLRMILQKHHF-----ICEGINFDL-PEVVGEAPSI-------------------------- 203 (309)
Q Consensus 160 ~~~~vlDvG~G~G~----~~~~l~~~~p~-----~~~~~~~D~-p~~~~~a~~~-------------------------- 203 (309)
+.-+|.-.||++|. +++.+.+.+|. .+ +++-|+ ..+++.|+..
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~-I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~ 174 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVK-ILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDG 174 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceE-EEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCC
Confidence 46799999999996 67777778863 56 899998 5677766530
Q ss_pred ---------CCceEEeCCCCCCC--CC-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707 204 ---------PGVTHIGGDMFNSI--PA-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP 259 (309)
Q Consensus 204 ---------~ri~~~~~d~~~~~--p~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~ 259 (309)
..|.|..+|.+++. ++ .|+|+|+|||-+|+.+...+++++.+..|+|||.|+|-..
T Consensus 175 ~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 175 SYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred cEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 35899999998874 33 4999999999999999999999999999999999998753
No 123
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.50 E-value=2.8e-07 Score=83.33 Aligned_cols=98 Identities=21% Similarity=0.208 Sum_probs=72.9
Q ss_pred CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------CCCceEEeCCCCCC---CCC-Ccee
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------IPGVTHIGGDMFNS---IPA-ANAI 223 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------~~ri~~~~~d~~~~---~p~-~D~i 223 (309)
+++.+||+||||+|..+.+++++.+..+ ++++|. +.+++.+++ .+|++++.+|.++. .++ .|+|
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~-v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEK-ATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcce-EEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 3456999999999999999998765667 999998 566666544 26889999888653 233 4999
Q ss_pred eehhhhhcCChhH--HHHHHHHHHHhcCCCcEEEEe
Q 021707 224 FMKWVLATWTDDE--CKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 224 ~~~~vlh~~~d~~--~~~iL~~~~~aL~pgG~l~i~ 257 (309)
++...-+.-+... ..+.++++++.|+|||.+++.
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 9765432222222 468899999999999998886
No 124
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.48 E-value=4.2e-07 Score=76.86 Aligned_cols=83 Identities=19% Similarity=0.390 Sum_probs=64.7
Q ss_pred CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hh-HHhhCCCCCCceEEeCCCCCC---CCC--Cceeeehhhhhc
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PE-VVGEAPSIPGVTHIGGDMFNS---IPA--ANAIFMKWVLAT 231 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~-~~~~a~~~~ri~~~~~d~~~~---~p~--~D~i~~~~vlh~ 231 (309)
+.+.+|||+|||.|.++..|.+. .+++ +.++|+ ++ +.+..+ ..+.++.+|+.+. +|. .|.|+++.+|..
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~-g~GvEid~~~v~~cv~--rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~ 87 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVD-GYGVEIDPDNVAACVA--RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQA 87 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCe-EEEEecCHHHHHHHHH--cCCCEEECCHHHhHhhCCCCCccEEehHhHHHh
Confidence 45689999999999999888876 5888 999998 33 333332 5788999998765 554 399999999998
Q ss_pred CChhHHHHHHHHHHHh
Q 021707 232 WTDDECKLIMENCYKA 247 (309)
Q Consensus 232 ~~d~~~~~iL~~~~~a 247 (309)
....+ ++|+++.++
T Consensus 88 ~~~P~--~vL~EmlRV 101 (193)
T PF07021_consen 88 VRRPD--EVLEEMLRV 101 (193)
T ss_pred HhHHH--HHHHHHHHh
Confidence 87764 778887766
No 125
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.47 E-value=1.1e-06 Score=81.59 Aligned_cols=105 Identities=15% Similarity=0.046 Sum_probs=75.6
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC-CCC--C
Q 021707 151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-IPA--A 220 (309)
Q Consensus 151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-~p~--~ 220 (309)
++.... ++.+.+|+|+|||+|.++.+.+.. ..+ ++++|. +.++..++++ ..+++..+|+.+. .+. .
T Consensus 174 ~~~l~~-~~~g~~vLDp~cGtG~~lieaa~~--~~~-v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~ 249 (329)
T TIGR01177 174 MVNLAR-VTEGDRVLDPFCGTGGFLIEAGLM--GAK-VIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESV 249 (329)
T ss_pred HHHHhC-CCCcCEEEECCCCCCHHHHHHHHh--CCe-EEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCC
Confidence 344443 667789999999999999887653 567 999998 6677765542 4488999999864 322 4
Q ss_pred ceeeehhhhh-------cCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707 221 NAIFMKWVLA-------TWTDDECKLIMENCYKALLAGGKLIACEP 259 (309)
Q Consensus 221 D~i~~~~vlh-------~~~d~~~~~iL~~~~~aL~pgG~l~i~e~ 259 (309)
|+|++.-... +...+-..++|+++++.|+|||++++.-+
T Consensus 250 D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 250 DAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 9999852211 11123357899999999999999988754
No 126
>PRK03612 spermidine synthase; Provisional
Probab=98.46 E-value=5e-07 Score=88.92 Aligned_cols=98 Identities=21% Similarity=0.198 Sum_probs=74.3
Q ss_pred CCcceEEEecCCccHHHHHHHHhcCC-CceEEEeec-hhHHhhCCC-------------CCCceEEeCCCCCC---CCC-
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQKHHF-ICEGINFDL-PEVVGEAPS-------------IPGVTHIGGDMFNS---IPA- 219 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-p~~~~~a~~-------------~~ri~~~~~d~~~~---~p~- 219 (309)
+++.+|||||||+|..+.++++ +|. .+ ++++|+ |++++.+++ .+|++++.+|.++. .++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~-v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQ-VTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCe-EEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCC
Confidence 4568999999999999999997 465 56 999999 788888765 16899999998763 333
Q ss_pred CceeeehhhhhcCChh---HHHHHHHHHHHhcCCCcEEEEec
Q 021707 220 ANAIFMKWVLATWTDD---ECKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 220 ~D~i~~~~vlh~~~d~---~~~~iL~~~~~aL~pgG~l~i~e 258 (309)
.|+|++...-+..+.. -..++++++++.|+|||.+++.-
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 4999986432221111 12468999999999999988764
No 127
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.45 E-value=2.5e-07 Score=79.53 Aligned_cols=94 Identities=19% Similarity=0.354 Sum_probs=66.9
Q ss_pred ceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC------CCCCceEEeCCCCCC----CC-CC-ceeeehhh
Q 021707 162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP------SIPGVTHIGGDMFNS----IP-AA-NAIFMKWV 228 (309)
Q Consensus 162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~------~~~ri~~~~~d~~~~----~p-~~-D~i~~~~v 228 (309)
..+||||||.|.++..+++.+|+.. .+++|. ...+..+. ...++.++++|.... ++ .. |-|++.+.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n-~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDIN-FIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSE-EEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCC-EEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 4899999999999999999999999 999998 34443332 248999999998763 34 33 65555432
Q ss_pred hhcCChh-------HHHHHHHHHHHhcCCCcEEEEe
Q 021707 229 LATWTDD-------ECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 229 lh~~~d~-------~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
= -|+.. -...+|+.+++.|+|||.|.+.
T Consensus 98 D-PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 98 D-PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred C-CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 1 13321 1457999999999999988765
No 128
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.44 E-value=6.3e-07 Score=75.15 Aligned_cols=102 Identities=12% Similarity=0.210 Sum_probs=69.6
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----CCCceEEeCCCCCC-CCC--C
Q 021707 149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----IPGVTHIGGDMFNS-IPA--A 220 (309)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~~ri~~~~~d~~~~-~p~--~ 220 (309)
+.+++.++ +....+|+|||||+|.++..++++ ..+ ++++|. +.+++.+++ .++++++.+|+.+. .+. .
T Consensus 3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~-v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AAR-VTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCe-EEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCC
Confidence 45666665 667789999999999999999988 456 999998 556666544 36899999999875 443 3
Q ss_pred ceeeehhhhhcCChhHHHHHHHHHHHhc--CCCcEEEEecc
Q 021707 221 NAIFMKWVLATWTDDECKLIMENCYKAL--LAGGKLIACEP 259 (309)
Q Consensus 221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL--~pgG~l~i~e~ 259 (309)
|.|+.+ ..++... .++.++.+.. .++|.+++-..
T Consensus 79 d~vi~n-~Py~~~~----~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 79 YKVVGN-LPYNIST----PILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred CEEEEC-CCcccHH----HHHHHHHhcCCCcceEEEEEEHH
Confidence 777654 4444443 3444444332 35666655443
No 129
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.44 E-value=9.6e-07 Score=75.48 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=73.0
Q ss_pred hhhcCchHHHHH----HHHhhcCCcccHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhC
Q 021707 125 YYGKMPEMNGLM----RRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEA 200 (309)
Q Consensus 125 ~~~~~~~~~~~f----~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a 200 (309)
.+.++|+....| ++.+..|...-.+.+++.+...++...|.|.|||.+.++..+.. ..+ +..+|+-..
T Consensus 33 lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~-V~SfDLva~---- 104 (219)
T PF05148_consen 33 LFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHK-VHSFDLVAP---- 104 (219)
T ss_dssp HHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-------EEEEESS-S----
T ss_pred HHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---Cce-EEEeeccCC----
Confidence 345566555544 44444444444666777775345567999999999999976542 346 889998431
Q ss_pred CCCCCceEEeCCCCC-CCCC-C-ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 201 PSIPGVTHIGGDMFN-SIPA-A-NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 201 ~~~~ri~~~~~d~~~-~~p~-~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
++ .+.+.|+.+ |++. . |++++.-.|- ..+....|+++.|.|+|||.|.|.|....-.
T Consensus 105 --n~--~Vtacdia~vPL~~~svDv~VfcLSLM---GTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~ 164 (219)
T PF05148_consen 105 --NP--RVTACDIANVPLEDESVDVAVFCLSLM---GTNWPDFIREANRVLKPGGILKIAEVKSRFE 164 (219)
T ss_dssp --ST--TEEES-TTS-S--TT-EEEEEEES------SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S
T ss_pred --CC--CEEEecCccCcCCCCceeEEEEEhhhh---CCCcHHHHHHHHheeccCcEEEEEEecccCc
Confidence 23 356678855 3544 3 9988877763 2345689999999999999999999765443
No 130
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.43 E-value=1.3e-06 Score=83.97 Aligned_cols=111 Identities=16% Similarity=0.176 Sum_probs=79.8
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC---CC-C-
Q 021707 151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS---IP-A- 219 (309)
Q Consensus 151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~---~p-~- 219 (309)
+...++ ...+.+|||+|||+|..+..+++..++.+ ++++|. +.+++.++++ -+++++.+|..+. .+ .
T Consensus 236 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~-v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 236 AATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQ-VVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCC
Confidence 344554 55678999999999999999999998777 999998 6777766543 3478999999764 22 2
Q ss_pred Cceeeehh------hhh-------cCChhH-------HHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 220 ANAIFMKW------VLA-------TWTDDE-------CKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 220 ~D~i~~~~------vlh-------~~~d~~-------~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
.|.|++.- ++. .+..++ ..++|+++.+.|+|||++++.......
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 377 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP 377 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 49988422 111 112221 357999999999999999988754443
No 131
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.42 E-value=3.8e-07 Score=75.90 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=60.1
Q ss_pred EEeec-hhHHhhCCCC---------CCceEEeCCCCCC-CCC--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEE
Q 021707 189 INFDL-PEVVGEAPSI---------PGVTHIGGDMFNS-IPA--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLI 255 (309)
Q Consensus 189 ~~~D~-p~~~~~a~~~---------~ri~~~~~d~~~~-~p~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~ 255 (309)
+++|. +.|++.++++ .+|+++.+|..+. ++. .|+|++.+++|+++|. .++|++++++|+|||+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCcCeEEE
Confidence 46787 6788776431 4699999999764 444 3999999999999866 589999999999999999
Q ss_pred EeccccCCC
Q 021707 256 ACEPVLLDD 264 (309)
Q Consensus 256 i~e~~~~~~ 264 (309)
|.|...+++
T Consensus 79 i~d~~~~~~ 87 (160)
T PLN02232 79 ILDFNKSNQ 87 (160)
T ss_pred EEECCCCCh
Confidence 999986654
No 132
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.42 E-value=1.8e-06 Score=83.58 Aligned_cols=106 Identities=17% Similarity=0.165 Sum_probs=76.8
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC--Cceeeeh-
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA--ANAIFMK- 226 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~--~D~i~~~- 226 (309)
...+.+|||+|||+|..+..+++..+ ..+ ++++|. +.+++.++++ .+|+++.+|+.+..+. .|+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~-V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~ 326 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQ-ITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDA 326 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcC
Confidence 44567999999999999998888764 356 999998 6677666542 5689999998765333 4998851
Q ss_pred -----hhh-------hcCChhH-------HHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 227 -----WVL-------ATWTDDE-------CKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 227 -----~vl-------h~~~d~~-------~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
.++ +.++.++ -.++|+++++.|+|||+++.........
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~ 383 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPE 383 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence 111 1233332 2469999999999999999887665443
No 133
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.40 E-value=1.5e-06 Score=84.06 Aligned_cols=108 Identities=14% Similarity=0.108 Sum_probs=77.2
Q ss_pred HhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC---CCC-
Q 021707 152 LDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS---IPA- 219 (309)
Q Consensus 152 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~---~p~- 219 (309)
...++ ..++.+|+|+|||+|..+..+++.. ++.+ ++++|. +..++.++++ .+|+++.+|+.+. ++.
T Consensus 243 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~-v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~ 320 (444)
T PRK14902 243 APALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGK-VVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEK 320 (444)
T ss_pred HHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhccc
Confidence 34443 5566899999999999999999986 6678 999999 6666665442 4699999998764 333
Q ss_pred Cceeeehhh------hh-------cCChhH-------HHHHHHHHHHhcCCCcEEEEecccc
Q 021707 220 ANAIFMKWV------LA-------TWTDDE-------CKLIMENCYKALLAGGKLIACEPVL 261 (309)
Q Consensus 220 ~D~i~~~~v------lh-------~~~d~~-------~~~iL~~~~~aL~pgG~l~i~e~~~ 261 (309)
.|+|++.-- +. .+...+ ..++|+++.+.|+|||+++......
T Consensus 321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 599986321 11 112222 2468999999999999998765443
No 134
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.40 E-value=1.2e-06 Score=84.38 Aligned_cols=114 Identities=16% Similarity=0.157 Sum_probs=81.3
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------C-CceEEeCCCCCCC---C-
Q 021707 151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------P-GVTHIGGDMFNSI---P- 218 (309)
Q Consensus 151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~-ri~~~~~d~~~~~---p- 218 (309)
+...++ ...+.+|+|+|||+|..+..+++..++.+ ++++|. +..++.++++ . +++++.+|..... +
T Consensus 230 ~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~-v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~ 307 (426)
T TIGR00563 230 VATWLA-PQNEETILDACAAPGGKTTHILELAPQAQ-VVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAEN 307 (426)
T ss_pred HHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCe-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccc
Confidence 444554 55678999999999999999999988777 999998 6677666542 1 3444777776431 2
Q ss_pred C-Cceeee------hhhhhcCCh-------h-------HHHHHHHHHHHhcCCCcEEEEeccccCCCCC
Q 021707 219 A-ANAIFM------KWVLATWTD-------D-------ECKLIMENCYKALLAGGKLIACEPVLLDDSN 266 (309)
Q Consensus 219 ~-~D~i~~------~~vlh~~~d-------~-------~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~~ 266 (309)
. .|.|++ ..+++..|+ + ...++|+++++.|+|||+++..........+
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~En 376 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEEN 376 (426)
T ss_pred cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhC
Confidence 2 499885 245554443 1 1368999999999999999998776654433
No 135
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.39 E-value=8.1e-07 Score=82.34 Aligned_cols=117 Identities=16% Similarity=0.230 Sum_probs=77.4
Q ss_pred HHHHHHHhhcCCcccHHHHHhhcC----CCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC----
Q 021707 133 NGLMRRAISGVSVPFMTSVLDSYN----GFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI---- 203 (309)
Q Consensus 133 ~~~f~~~m~~~~~~~~~~~~~~~~----~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~---- 203 (309)
.+.|+.++. ..++..+- .-....+|||+|||.|.-+.--... +.+..+++|+ +..+++|+++
T Consensus 38 lR~fNNwvK-------s~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~ 108 (331)
T PF03291_consen 38 LRNFNNWVK-------SVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQL 108 (331)
T ss_dssp HHHHHHHHH-------HHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHH
T ss_pred HHHHhHHHH-------HHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 467777665 23333331 0115689999999988866555544 3334899998 4455554321
Q ss_pred ------------CCceEEeCCCCCC-----C-CC---CceeeehhhhhcC--ChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707 204 ------------PGVTHIGGDMFNS-----I-PA---ANAIFMKWVLATW--TDDECKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 204 ------------~ri~~~~~d~~~~-----~-p~---~D~i~~~~vlh~~--~d~~~~~iL~~~~~aL~pgG~l~i~e 258 (309)
-...++.+|.+.. + +. .|+|-+.+.+|+. +++.+..+|+++.+.|+|||.++..-
T Consensus 109 ~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 109 KKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp HTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 2357788888753 2 22 3999999999984 56678889999999999999998763
No 136
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.32 E-value=1.6e-06 Score=74.88 Aligned_cols=112 Identities=19% Similarity=0.314 Sum_probs=68.2
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC---------------CCCCceEEeCC
Q 021707 149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP---------------SIPGVTHIGGD 212 (309)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~---------------~~~ri~~~~~d 212 (309)
..+++.+. ......++|+|||.|......+..++--+ ++++++ +...+.+. +..++++..+|
T Consensus 32 ~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~-~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 32 SKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKK-SVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SE-EEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcE-EEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 44566664 77778999999999999988887765444 999998 33332221 12678999999
Q ss_pred CCCC------CCCCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707 213 MFNS------IPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS 265 (309)
Q Consensus 213 ~~~~------~p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~ 265 (309)
+.+. +..+|+|++++.+ |+++- ..-|++....|+||.+++-...+.+...
T Consensus 110 fl~~~~~~~~~s~AdvVf~Nn~~--F~~~l-~~~L~~~~~~lk~G~~IIs~~~~~~~~~ 165 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVVFVNNTC--FDPDL-NLALAELLLELKPGARIISTKPFCPRRR 165 (205)
T ss_dssp TTTHHHHHHHGHC-SEEEE--TT--T-HHH-HHHHHHHHTTS-TT-EEEESS-SS-TT-
T ss_pred ccccHhHhhhhcCCCEEEEeccc--cCHHH-HHHHHHHHhcCCCCCEEEECCCcCCCCc
Confidence 9874 2457999999875 55554 4555778888999999998888877653
No 137
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=2.5e-06 Score=77.28 Aligned_cols=96 Identities=20% Similarity=0.181 Sum_probs=66.8
Q ss_pred CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC---CCce----EEeCCCCCCCC--CCceeeehhh
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI---PGVT----HIGGDMFNSIP--AANAIFMKWV 228 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~---~ri~----~~~~d~~~~~p--~~D~i~~~~v 228 (309)
.++.+|+|||||+|-++++.++... .+ ++++|+ |..+..++++ .++. ....+..+... .+|+|+.+-.
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA-~~-v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL 238 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGA-KK-VVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL 238 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCC-ce-EEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhh
Confidence 4678999999999999999998753 34 899999 6667766654 3343 22233322222 2599887653
Q ss_pred hhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707 229 LATWTDDECKLIMENCYKALLAGGKLIACEPVL 261 (309)
Q Consensus 229 lh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~ 261 (309)
- +-.+++...+++.++|||++++.-.+-
T Consensus 239 A-----~vl~~La~~~~~~lkpgg~lIlSGIl~ 266 (300)
T COG2264 239 A-----EVLVELAPDIKRLLKPGGRLILSGILE 266 (300)
T ss_pred H-----HHHHHHHHHHHHHcCCCceEEEEeehH
Confidence 2 123588899999999999888876443
No 138
>PHA03412 putative methyltransferase; Provisional
Probab=98.30 E-value=3e-06 Score=74.28 Aligned_cols=95 Identities=14% Similarity=0.089 Sum_probs=69.0
Q ss_pred cceEEEecCCccHHHHHHHHhcC---CCceEEEeec-hhHHhhCCCC-CCceEEeCCCCCC-CCC-CceeeehhhhhcCC
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHH---FICEGINFDL-PEVVGEAPSI-PGVTHIGGDMFNS-IPA-ANAIFMKWVLATWT 233 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~~D~-p~~~~~a~~~-~ri~~~~~d~~~~-~p~-~D~i~~~~vlh~~~ 233 (309)
..+|||+|||+|.++..++++++ ..+ ++++|+ +.+++.++++ .+++++.+|+.+. .+. .|+|+++--.+...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~-V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPRE-IVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcE-EEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCcc
Confidence 57999999999999999998753 567 999999 6778888765 7799999999764 333 59999875554221
Q ss_pred --h--------hHHHHHHHHHHHhcCCCcEEEEe
Q 021707 234 --D--------DECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 234 --d--------~~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
+ .-..++++++.+.++| |.+++=
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~-G~~ILP 161 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQ-GTFIIP 161 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCC-CEEEeC
Confidence 1 1134588888884454 455443
No 139
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.29 E-value=3.5e-06 Score=81.22 Aligned_cols=110 Identities=14% Similarity=0.078 Sum_probs=79.2
Q ss_pred HhhcCCCCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCC------
Q 021707 152 LDSYNGFKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSI------ 217 (309)
Q Consensus 152 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~------ 217 (309)
...++ ...+.+|+|+|||+|..+..+++... ..+ ++++|. +..++.++++ .+|+++.+|..+..
T Consensus 245 ~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~-v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 322 (434)
T PRK14901 245 APLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGE-IWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQW 322 (434)
T ss_pred HHHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccc
Confidence 34453 55678999999999999999999864 457 999998 6677666542 56899999986532
Q ss_pred CC-Cceeeeh------hhhhcCCh-------hH-------HHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 218 PA-ANAIFMK------WVLATWTD-------DE-------CKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 218 p~-~D~i~~~------~vlh~~~d-------~~-------~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
++ +|.|++- .+++..++ ++ ..++|+++.+.|+|||+|+.....+..
T Consensus 323 ~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~ 389 (434)
T PRK14901 323 RGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP 389 (434)
T ss_pred cccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 12 4999862 34443332 22 368999999999999999887755443
No 140
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.28 E-value=2.1e-06 Score=77.47 Aligned_cols=103 Identities=23% Similarity=0.372 Sum_probs=75.6
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhH-HhhCCCC--------C----CceEEeCCCCCC-
Q 021707 151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEV-VGEAPSI--------P----GVTHIGGDMFNS- 216 (309)
Q Consensus 151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~-~~~a~~~--------~----ri~~~~~d~~~~- 216 (309)
++..+ .+....++|+|||-|.-++.--++. ....+++|+.+| +++++++ . .+.|+++|-+..
T Consensus 110 LI~~y--~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~ 185 (389)
T KOG1975|consen 110 LINLY--TKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKER 185 (389)
T ss_pred HHHHH--hccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhH
Confidence 44444 3456789999999998777665542 223799999654 6666542 2 468889987742
Q ss_pred --------CCCCceeeehhhhhc-C-ChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707 217 --------IPAANAIFMKWVLAT-W-TDDECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 217 --------~p~~D~i~~~~vlh~-~-~d~~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
.|..|+|-+.+++|+ | +.+.+..+|+++.+.|+|||.++-.
T Consensus 186 l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 186 LMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred HHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 233699999999998 3 4667899999999999999977754
No 141
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.28 E-value=1e-06 Score=73.37 Aligned_cols=103 Identities=16% Similarity=0.169 Sum_probs=74.6
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC------CC-CCceEEeCCCCCC--CCC-Cceeeehhhh
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP------SI-PGVTHIGGDMFNS--IPA-ANAIFMKWVL 229 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~------~~-~ri~~~~~d~~~~--~p~-~D~i~~~~vl 229 (309)
..+|||+|||.|+++..|++.--.-+ .+++|- +..++.|+ .. +.|+|+..|++++ .+. .|+|+=...+
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~-L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSK-LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCC-ccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 34999999999999999999875556 788887 44554443 22 4499999999986 333 3777744433
Q ss_pred -----h-cCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 230 -----A-TWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 230 -----h-~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
| +-++....--+-.+.+.|+|||+++|..-.+..+
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~d 187 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKD 187 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHH
Confidence 2 2233333456777888999999999998877766
No 142
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.25 E-value=6.3e-06 Score=74.26 Aligned_cols=105 Identities=17% Similarity=0.193 Sum_probs=74.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcCC-CceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC---CCCCceeeeh
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHHF-ICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS---IPAANAIFMK 226 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~---~p~~D~i~~~ 226 (309)
...+.+|||+|||+|..+..+++...+ .. ++++|. +..++.++++ .+|+++.+|.... .+..|.|++-
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~-v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D 147 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGA-IVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLD 147 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCE-EEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEc
Confidence 445679999999999999999988754 46 999998 6666655432 5688998887542 2235988852
Q ss_pred h------hh-------hcCChhH-------HHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 227 W------VL-------ATWTDDE-------CKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 227 ~------vl-------h~~~d~~-------~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
- ++ ..|.+++ ..++|+++.+.|+|||+|+.....+..
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 1 11 1233332 256999999999999998876554443
No 143
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.25 E-value=5.6e-06 Score=79.69 Aligned_cols=110 Identities=13% Similarity=0.063 Sum_probs=77.4
Q ss_pred hhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC---CCC-C
Q 021707 153 DSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS---IPA-A 220 (309)
Q Consensus 153 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~---~p~-~ 220 (309)
..++ ...+.+|||+|||+|..+..+++.. +..+ ++++|. +..++.++++ .+++++.+|..+. .++ .
T Consensus 231 ~~l~-~~~g~~VLD~cagpGgkt~~la~~~~~~g~-V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 231 LLME-LEPGLRVLDTCAAPGGKTTAIAELMKDQGK-ILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred HHhC-CCCCCEEEEeCCCccHHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccC
Confidence 3443 5567799999999999999999886 4567 999998 6677666542 4688999998653 122 4
Q ss_pred ceeeeh------hhh-------hcCChh-------HHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 221 NAIFMK------WVL-------ATWTDD-------ECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 221 D~i~~~------~vl-------h~~~d~-------~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
|.|++- .++ +.++.+ .-.++|.++++.|+|||+++.....+...
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e 372 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKE 372 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh
Confidence 988852 112 222322 23678999999999999987766555443
No 144
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=1e-05 Score=71.13 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=92.1
Q ss_pred HHhhcCCccc----HHHHHhhcCCCCCcceEEEecCCccHHHHHHHH-hcCCCceEEEeec-hhHHhhCCCC-------C
Q 021707 138 RAISGVSVPF----MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQ-KHHFICEGINFDL-PEVVGEAPSI-------P 204 (309)
Q Consensus 138 ~~m~~~~~~~----~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~-~~p~~~~~~~~D~-p~~~~~a~~~-------~ 204 (309)
..|...++.. +..++.... ...+.+|+|.|-|+|.++..|+. ..|.-+ ++.+|. +...+.|+++ +
T Consensus 69 ~~~~R~tQiIyPKD~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~-v~tyE~r~d~~k~A~~Nl~~~~l~d 146 (256)
T COG2519 69 LSMKRRTQIIYPKDAGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGH-VTTYEIREDFAKTARENLSEFGLGD 146 (256)
T ss_pred HhCcCCCceecCCCHHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCce-EEEEEecHHHHHHHHHHHHHhcccc
Confidence 3466666643 344667775 88899999999999999999997 568788 999997 6667666653 6
Q ss_pred CceEEeCCCCCC-CCC-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 205 GVTHIGGDMFNS-IPA-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 205 ri~~~~~d~~~~-~p~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
+|++..+|..+. .++ .|.+++ |.|++ -+.|.+++++|+|||.+++.-+..+.
T Consensus 147 ~v~~~~~Dv~~~~~~~~vDav~L-----Dmp~P--W~~le~~~~~Lkpgg~~~~y~P~veQ 200 (256)
T COG2519 147 RVTLKLGDVREGIDEEDVDAVFL-----DLPDP--WNVLEHVSDALKPGGVVVVYSPTVEQ 200 (256)
T ss_pred ceEEEeccccccccccccCEEEE-----cCCCh--HHHHHHHHHHhCCCcEEEEEcCCHHH
Confidence 799999999887 333 488876 56777 48999999999999999998777654
No 145
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.22 E-value=2e-06 Score=78.33 Aligned_cols=94 Identities=17% Similarity=0.093 Sum_probs=64.8
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCC--CCceeeehhhh
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIP--AANAIFMKWVL 229 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p--~~D~i~~~~vl 229 (309)
++.+|||||||+|-++++.++... -+ ++++|. |..++.++++ +++.+. . ..+.+ .+|+|+.+-..
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klGA-~~-v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~-~~~~~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLGA-KK-VVAIDIDPLAVEAARENAELNGVEDRIEVS--L-SEDLVEGKFDLVVANILA 235 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTTB-SE-EEEEESSCHHHHHHHHHHHHTT-TTCEEES--C-TSCTCCS-EEEEEEES-H
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC-Ce-EEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E-ecccccccCCEEEECCCH
Confidence 457999999999999999998743 35 999998 6666666553 555542 1 12222 25999865433
Q ss_pred hcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 230 ATWTDDECKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 230 h~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
+-...++..+.+.|+|||++++.-.+..+
T Consensus 236 -----~vL~~l~~~~~~~l~~~G~lIlSGIl~~~ 264 (295)
T PF06325_consen 236 -----DVLLELAPDIASLLKPGGYLILSGILEEQ 264 (295)
T ss_dssp -----HHHHHHHHHCHHHEEEEEEEEEEEEEGGG
T ss_pred -----HHHHHHHHHHHHhhCCCCEEEEccccHHH
Confidence 23467888899999999998887555443
No 146
>PLN02672 methionine S-methyltransferase
Probab=98.22 E-value=5.3e-06 Score=86.95 Aligned_cols=98 Identities=17% Similarity=0.085 Sum_probs=71.7
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC----------------------CCceEEeCCCCCCC
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI----------------------PGVTHIGGDMFNSI 217 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~----------------------~ri~~~~~d~~~~~ 217 (309)
..+|+|+|||+|..++.+++++|+.+ ++++|+ +.+++.++++ +|++++.+|+++..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~-v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSK-VYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 35899999999999999999999989 999998 6666555321 47999999998875
Q ss_pred CC----Cceeeeh--hhhhc----CC--------------------------hh----HHHHHHHHHHHhcCCCcEEEEe
Q 021707 218 PA----ANAIFMK--WVLAT----WT--------------------------DD----ECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 218 p~----~D~i~~~--~vlh~----~~--------------------------d~----~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
+. .|+|+.+ ++... .+ ++ -..++++++.+.|+|||.++ +
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~-l 276 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI-F 276 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE-E
Confidence 32 4887754 22110 00 01 13688899999999999665 5
Q ss_pred ccc
Q 021707 258 EPV 260 (309)
Q Consensus 258 e~~ 260 (309)
|.-
T Consensus 277 EiG 279 (1082)
T PLN02672 277 NMG 279 (1082)
T ss_pred EEC
Confidence 543
No 147
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.21 E-value=3.4e-06 Score=73.99 Aligned_cols=95 Identities=17% Similarity=0.307 Sum_probs=69.3
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhC-C---C--CCCceEEeCCCCCC----CCC-C-ceeeehh
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEA-P---S--IPGVTHIGGDMFNS----IPA-A-NAIFMKW 227 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a-~---~--~~ri~~~~~d~~~~----~p~-~-D~i~~~~ 227 (309)
...+||||||.|.+...+++++|+.. ++++|. ..++..+ + + ..++.++++|..+. .|. . |-|++++
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~n-fiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKN-FLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCC-EEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 36899999999999999999999999 999998 3333332 2 2 24999999998653 343 3 5555543
Q ss_pred hhhcCChh-------HHHHHHHHHHHhcCCCcEEEEe
Q 021707 228 VLATWTDD-------ECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 228 vlh~~~d~-------~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
. --|+.. -....|+.+.+.|+|||.|.+.
T Consensus 128 P-DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 128 P-DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred C-CCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 2 123321 1357899999999999998765
No 148
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.16 E-value=1.1e-06 Score=75.62 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=79.3
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCc---eEEe-CCCCCC--CCCCce
Q 021707 150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGV---THIG-GDMFNS--IPAANA 222 (309)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri---~~~~-~d~~~~--~p~~D~ 222 (309)
.++...+ .....+++|+|||||.++.++...-.. .+++|+ ..|++.+.+++-. ..-. .+|.+. ....|+
T Consensus 116 emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~~---ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DL 191 (287)
T COG4976 116 EMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMADR---LTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDL 191 (287)
T ss_pred HHHHhcc-CCccceeeecccCcCcccHhHHHHHhh---ccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccc
Confidence 3444443 444789999999999999998866433 789999 5689988775221 1111 124432 333699
Q ss_pred eeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707 223 IFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS 265 (309)
Q Consensus 223 i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~ 265 (309)
|....||-++.+-+ .++.-+...|+|||.+...-.-.++++
T Consensus 192 i~AaDVl~YlG~Le--~~~~~aa~~L~~gGlfaFSvE~l~~~~ 232 (287)
T COG4976 192 IVAADVLPYLGALE--GLFAGAAGLLAPGGLFAFSVETLPDDG 232 (287)
T ss_pred hhhhhHHHhhcchh--hHHHHHHHhcCCCceEEEEecccCCCC
Confidence 99999999998775 889999999999998887655555554
No 149
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.16 E-value=1.3e-05 Score=65.94 Aligned_cols=111 Identities=19% Similarity=0.234 Sum_probs=89.3
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCC-CCCCceEEeCCCCCC------CC
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAP-SIPGVTHIGGDMFNS------IP 218 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~-~~~ri~~~~~d~~~~------~p 218 (309)
++.+.+..+ +..+.-|+++|.|+|.+..+++++. ++-. .+.++- ++.+.... ..+.++++.||.+.. .+
T Consensus 37 A~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~-L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~ 114 (194)
T COG3963 37 ARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPES-LTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHK 114 (194)
T ss_pred HHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccc-eEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcC
Confidence 455666776 8888899999999999999999985 4455 777776 55555554 458888999998864 22
Q ss_pred C--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707 219 A--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV 260 (309)
Q Consensus 219 ~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~ 260 (309)
. .|.|++.--+-.+|-....++|+++...|++||.++-..--
T Consensus 115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 2 49999999999999999999999999999999988876543
No 150
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.13 E-value=9.2e-06 Score=71.73 Aligned_cols=96 Identities=20% Similarity=0.193 Sum_probs=70.8
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCCCCC-CceeeehhhhhcCChhHH
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNSIPA-ANAIFMKWVLATWTDDEC 237 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~~p~-~D~i~~~~vlh~~~d~~~ 237 (309)
+..++||||+|.|..+..++..|.+ +.+-+. +.|....++ .+++++..|-++.-+. .|+|.|.|+|-.-.++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~---v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P-- 167 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE---VYATEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP-- 167 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce---EEeecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCCH--
Confidence 3578999999999999999988876 556666 455555544 4566665544443332 5999999999766666
Q ss_pred HHHHHHHHHhcCCCcEEEEeccccC
Q 021707 238 KLIMENCYKALLAGGKLIACEPVLL 262 (309)
Q Consensus 238 ~~iL~~~~~aL~pgG~l~i~e~~~~ 262 (309)
..+|+.++++|+|+|++++. .++|
T Consensus 168 ~~LL~~i~~~l~p~G~lilA-vVlP 191 (265)
T PF05219_consen 168 LTLLRDIRRALKPNGRLILA-VVLP 191 (265)
T ss_pred HHHHHHHHHHhCCCCEEEEE-EEec
Confidence 58999999999999987764 4444
No 151
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.10 E-value=8.4e-06 Score=68.71 Aligned_cols=102 Identities=16% Similarity=0.058 Sum_probs=67.3
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCC---------CCCceEEeCCCCCCC------CC-Cc
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPS---------IPGVTHIGGDMFNSI------PA-AN 221 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~---------~~ri~~~~~d~~~~~------p~-~D 221 (309)
..++.+||++|||+|..++.+++.++..+ +++-|.++++...+. ..++++.+.|+.++. +. .|
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~-Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAAR-VVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SE-EEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCce-EEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 34568999999999999999999876667 999998766554432 267899998887641 22 59
Q ss_pred eeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707 222 AIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL 262 (309)
Q Consensus 222 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~ 262 (309)
+|+.+.++++ ++....+++.+.+.|+|+|.+++......
T Consensus 122 ~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~R~ 160 (173)
T PF10294_consen 122 VILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKRRR 160 (173)
T ss_dssp EEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S-
T ss_pred EEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCEec
Confidence 9999999985 56678899999999999988888776663
No 152
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.09 E-value=1.3e-05 Score=72.64 Aligned_cols=102 Identities=16% Similarity=0.212 Sum_probs=75.4
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----CCC---ceEEeCCCC---CCCCCCceeeehhh
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----IPG---VTHIGGDMF---NSIPAANAIFMKWV 228 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~~r---i~~~~~d~~---~~~p~~D~i~~~~v 228 (309)
.+.+|||+|+|.|..+.++.+.++....++++|. +.+.+.++. ... ..+. .++. .+++..|+|+++|+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~DLvi~s~~ 111 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-RVLYRDFLPFPPDDLVIASYV 111 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-hhhhcccccCCCCcEEEEehh
Confidence 4579999999999999999999996655899998 555554432 111 1111 1121 12334599999999
Q ss_pred hhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 229 LATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 229 lh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
|-.+++++..++++++.+.+.+ .|+|+|+-.+..
T Consensus 112 L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~G 145 (274)
T PF09243_consen 112 LNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAG 145 (274)
T ss_pred hhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHH
Confidence 9999998889999999888775 999999877765
No 153
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.08 E-value=1.4e-05 Score=71.51 Aligned_cols=91 Identities=10% Similarity=0.176 Sum_probs=63.8
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----CCCceEEeCCCCCC-CCCCc
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----IPGVTHIGGDMFNS-IPAAN 221 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~~ri~~~~~d~~~~-~p~~D 221 (309)
...+++.++ ..+..+|+|||||+|.++..++++++ + ++++|. +.+++.+++ .++++++.+|+.+. .+..|
T Consensus 18 ~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~-v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d 93 (253)
T TIGR00755 18 IQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAK--K-VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP 93 (253)
T ss_pred HHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCC--c-EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence 455666665 66778999999999999999999986 4 888888 556655543 37899999999875 44334
Q ss_pred --eeeehhhhhcCChhHHHHHHHHHHH
Q 021707 222 --AIFMKWVLATWTDDECKLIMENCYK 246 (309)
Q Consensus 222 --~i~~~~vlh~~~d~~~~~iL~~~~~ 246 (309)
.+++++.-++++. .++.++.+
T Consensus 94 ~~~~vvsNlPy~i~~----~il~~ll~ 116 (253)
T TIGR00755 94 KQLKVVSNLPYNISS----PLIFKLLE 116 (253)
T ss_pred CcceEEEcCChhhHH----HHHHHHhc
Confidence 3455555555544 45555544
No 154
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.08 E-value=1.4e-05 Score=71.65 Aligned_cols=81 Identities=12% Similarity=0.182 Sum_probs=60.1
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----CCCceEEeCCCCCC-CCCCc
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----IPGVTHIGGDMFNS-IPAAN 221 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~~ri~~~~~d~~~~-~p~~D 221 (309)
...+++.++ ..+..+|+|||||+|.++..++++. .+ ++++|. +.+++.+++ .++++++.+|+.+. ++..|
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~-v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d 93 (258)
T PRK14896 18 VDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KK-VYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFN 93 (258)
T ss_pred HHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CE-EEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhce
Confidence 455666664 6667899999999999999999984 46 999998 566665543 36899999999874 55568
Q ss_pred eeeehhhhhcCC
Q 021707 222 AIFMKWVLATWT 233 (309)
Q Consensus 222 ~i~~~~vlh~~~ 233 (309)
.|+.+- -++.+
T Consensus 94 ~Vv~Nl-Py~i~ 104 (258)
T PRK14896 94 KVVSNL-PYQIS 104 (258)
T ss_pred EEEEcC-CcccC
Confidence 776643 34444
No 155
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.06 E-value=2.2e-05 Score=69.53 Aligned_cols=100 Identities=13% Similarity=0.094 Sum_probs=68.8
Q ss_pred CCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeech-hHHhhCCC-------CCCceEEe----CCCCCCCC--CC--
Q 021707 157 GFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP-EVVGEAPS-------IPGVTHIG----GDMFNSIP--AA-- 220 (309)
Q Consensus 157 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p-~~~~~a~~-------~~ri~~~~----~d~~~~~p--~~-- 220 (309)
++.+...++|+|||+|..+..++...|+.+ ++.+|.+ ..+..+.+ .+++.++. .|.+.+.| ..
T Consensus 145 ~~~~~~~ildlgtGSGaIslsll~~L~~~~-v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~ 223 (328)
T KOG2904|consen 145 EHSKHTHILDLGTGSGAISLSLLHGLPQCT-VTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKI 223 (328)
T ss_pred hhcccceEEEecCCccHHHHHHHhcCCCce-EEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCce
Confidence 355667999999999999999999999999 9999984 44554444 27888774 45444432 22
Q ss_pred ceeeeh--hhhhcC-----------Ch-----------hHHHHHHHHHHHhcCCCcEEEEe
Q 021707 221 NAIFMK--WVLATW-----------TD-----------DECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 221 D~i~~~--~vlh~~-----------~d-----------~~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
|+++.+ ++.|+= .+ +-...++.=+.+.|+|||.+.+-
T Consensus 224 dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 224 DLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred eEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 777664 343320 00 22456667778999999876654
No 156
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.06 E-value=7.6e-06 Score=70.51 Aligned_cols=93 Identities=9% Similarity=0.007 Sum_probs=62.9
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCC---C-Cceeeehhh
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIP---A-ANAIFMKWV 228 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p---~-~D~i~~~~v 228 (309)
...+|||+|||+|.++.+++.+.. .+ ++++|. +.+++.++++ .+++++.+|+++.++ . .|+|++.=-
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~-V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AG-ATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CE-EEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 346899999999999998766653 46 999998 6666655442 579999999876432 2 599987655
Q ss_pred hhcCChhHHHHHHHHHHHh--cCCCcEEEEe
Q 021707 229 LATWTDDECKLIMENCYKA--LLAGGKLIAC 257 (309)
Q Consensus 229 lh~~~d~~~~~iL~~~~~a--L~pgG~l~i~ 257 (309)
.+. .-..++++.+.+. |+|++.+++-
T Consensus 131 y~~---g~~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 131 FRK---GLLEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred CCC---ChHHHHHHHHHHCCCcCCCcEEEEE
Confidence 322 1223455555553 7887755544
No 157
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.06 E-value=1.1e-05 Score=72.93 Aligned_cols=82 Identities=11% Similarity=0.157 Sum_probs=58.9
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC---CCceEEeCCCCCC-CCCC-c
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI---PGVTHIGGDMFNS-IPAA-N 221 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~---~ri~~~~~d~~~~-~p~~-D 221 (309)
...+++.++ .....+|||||||+|.++..++++.+ + ++++|. +.+++.+++. ++++++.+|+.+. ++.. .
T Consensus 31 ~~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~-v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~ 106 (272)
T PRK00274 31 LDKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--K-VTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQP 106 (272)
T ss_pred HHHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--c-EEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCc
Confidence 345666664 66678999999999999999999976 6 999998 6777776543 6899999999874 3332 2
Q ss_pred eeeehhhhhcCC
Q 021707 222 AIFMKWVLATWT 233 (309)
Q Consensus 222 ~i~~~~vlh~~~ 233 (309)
..+..+.-++.+
T Consensus 107 ~~vv~NlPY~is 118 (272)
T PRK00274 107 LKVVANLPYNIT 118 (272)
T ss_pred ceEEEeCCccch
Confidence 233344444444
No 158
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.05 E-value=3.4e-05 Score=67.80 Aligned_cols=122 Identities=15% Similarity=0.098 Sum_probs=81.2
Q ss_pred hhhcCchHHHHHHHHhhcCCc----ccHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhC
Q 021707 125 YYGKMPEMNGLMRRAISGVSV----PFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEA 200 (309)
Q Consensus 125 ~~~~~~~~~~~f~~~m~~~~~----~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a 200 (309)
.+.++|...+.|+......-. .-.+.+++.+...++...|.|+|||.+.++.. -..+ +..+|+-.+
T Consensus 141 lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~-----~~~k-V~SfDL~a~---- 210 (325)
T KOG3045|consen 141 LFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIASS-----ERHK-VHSFDLVAV---- 210 (325)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhhc-----cccc-eeeeeeecC----
Confidence 345677766666665544332 33556677665345678999999999998861 1224 788888543
Q ss_pred CCCCCceEEeCCCCC-CCCC--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 201 PSIPGVTHIGGDMFN-SIPA--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 201 ~~~~ri~~~~~d~~~-~~p~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
+=++++.|+.. |++. .|++++.-.|- ..+....+++++++|+|||.+.|.|.-..-
T Consensus 211 ----~~~V~~cDm~~vPl~d~svDvaV~CLSLM---gtn~~df~kEa~RiLk~gG~l~IAEv~SRf 269 (325)
T KOG3045|consen 211 ----NERVIACDMRNVPLEDESVDVAVFCLSLM---GTNLADFIKEANRILKPGGLLYIAEVKSRF 269 (325)
T ss_pred ----CCceeeccccCCcCccCcccEEEeeHhhh---cccHHHHHHHHHHHhccCceEEEEehhhhc
Confidence 33455678876 2433 38877665552 233468999999999999999999865443
No 159
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.02 E-value=1.2e-05 Score=71.66 Aligned_cols=104 Identities=20% Similarity=0.253 Sum_probs=67.5
Q ss_pred CcceEEEecCCcc--HHHHHHHH-hcCCCceEEEeec-hhHHhhCCC----CCC--ceEEeCCCCCC---C--CC---C-
Q 021707 160 GVKRLVDVGGSAG--DCLRMILQ-KHHFICEGINFDL-PEVVGEAPS----IPG--VTHIGGDMFNS---I--PA---A- 220 (309)
Q Consensus 160 ~~~~vlDvG~G~G--~~~~~l~~-~~p~~~~~~~~D~-p~~~~~a~~----~~r--i~~~~~d~~~~---~--p~---~- 220 (309)
+...+||||||.= ....++++ ..|+.+ ++-+|. |-+++.++. .++ ..++.+|+.++ + |. .
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aR-VVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~l 146 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDAR-VVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLL 146 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-E-EEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC-
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCce-EEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcC
Confidence 5789999999943 24455544 479999 999999 667776653 355 89999999876 2 22 1
Q ss_pred c-----eeeehhhhhcCCh-hHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 221 N-----AIFMKWVLATWTD-DECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 221 D-----~i~~~~vlh~~~d-~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
| .+++.-+||+.+| ++...+++..+++|.||+.|+|.....+..
T Consensus 147 D~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~ 196 (267)
T PF04672_consen 147 DFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGA 196 (267)
T ss_dssp -TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTS
T ss_pred CCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCC
Confidence 4 5889999999987 678999999999999999999998876544
No 160
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.99 E-value=1.1e-05 Score=77.93 Aligned_cols=100 Identities=11% Similarity=0.082 Sum_probs=68.3
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCC---
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSI--- 217 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~--- 217 (309)
.+.+++.++ .....+|||+|||+|.++..+++.. .+ ++++|. +.+++.++++ ++++++.+|+.+..
T Consensus 286 ~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~-V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~ 361 (443)
T PRK13168 286 VARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AE-VVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQ 361 (443)
T ss_pred HHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhh
Confidence 344455553 4456799999999999999999886 46 999998 6788777642 57999999986532
Q ss_pred --C-C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707 218 --P-A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 218 --p-~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
+ . .|+|++.- |-....++++.+.+ ++|++.+++.
T Consensus 362 ~~~~~~fD~Vi~dP-----Pr~g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 362 PWALGGFDKVLLDP-----PRAGAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred hhhcCCCCEEEECc-----CCcChHHHHHHHHh-cCCCeEEEEE
Confidence 1 2 49887642 21122345555544 6888766665
No 161
>PLN02476 O-methyltransferase
Probab=97.97 E-value=2.1e-05 Score=70.94 Aligned_cols=100 Identities=14% Similarity=0.099 Sum_probs=76.9
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCCCC---------C
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNSIP---------A 219 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~~p---------~ 219 (309)
..+..+|||||+++|..++.+++..| +-+ ++.+|. ++..+.|++ .++|+++.||..+.++ .
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~-V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGC-LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 45678999999999999999999876 556 899998 556666654 2799999999876421 2
Q ss_pred CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
.|+|++-. +..+-...+..+.+.|+|||.|++-+.++..
T Consensus 195 FD~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G 233 (278)
T PLN02476 195 YDFAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDNVLWHG 233 (278)
T ss_pred CCEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEecCccCC
Confidence 48887643 4456788899999999999987776666554
No 162
>PLN02823 spermine synthase
Probab=97.96 E-value=2.3e-05 Score=72.85 Aligned_cols=97 Identities=19% Similarity=0.135 Sum_probs=71.5
Q ss_pred CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------CCCceEEeCCCCCCC---CC-Ccee
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------IPGVTHIGGDMFNSI---PA-ANAI 223 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------~~ri~~~~~d~~~~~---p~-~D~i 223 (309)
+++.+||.||||.|..+.++++..+..+ ++++|+ |.+++.+++ .+|++++.+|.++.+ ++ .|+|
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~-v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEK-VVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCe-EEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 3567999999999999999998766667 999999 778877764 278999999987642 22 4999
Q ss_pred eehhhhhcCC---hh--HHHHHHH-HHHHhcCCCcEEEEe
Q 021707 224 FMKWVLATWT---DD--ECKLIME-NCYKALLAGGKLIAC 257 (309)
Q Consensus 224 ~~~~vlh~~~---d~--~~~~iL~-~~~~aL~pgG~l~i~ 257 (309)
++--. ..+. .. -..+.++ .+++.|+|||.+++.
T Consensus 181 i~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 181 IGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 97521 1110 00 0246787 899999999987764
No 163
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.95 E-value=1.7e-05 Score=76.40 Aligned_cols=126 Identities=21% Similarity=0.220 Sum_probs=77.7
Q ss_pred hhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhcCCC---CCcceEEEecCCccHHHHHHHHhc----CCCceEEEeec-
Q 021707 122 AYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGF---KGVKRLVDVGGSAGDCLRMILQKH----HFICEGINFDL- 193 (309)
Q Consensus 122 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~---~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~~D~- 193 (309)
.|+.+++++..-+.|.+++. ..+.+..... .+...|+|||||+|-++...+++. -..+ +.+++-
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~-------~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~-VyAVEkn 223 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIE-------EALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVK-VYAVEKN 223 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHH-------HHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESE-EEEEESS
T ss_pred cHhhHhcCHHHHHHHHHHHH-------HHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeE-EEEEcCC
Confidence 67778888888788888764 2233332201 135789999999999987776654 2456 899987
Q ss_pred hhHHhhC----CC---CCCceEEeCCCCCC-CCC-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEE
Q 021707 194 PEVVGEA----PS---IPGVTHIGGDMFNS-IPA-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLI 255 (309)
Q Consensus 194 p~~~~~a----~~---~~ri~~~~~d~~~~-~p~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~ 255 (309)
|..+... +. .++|+++.+|+.+- .|+ +|+|+.=..=.....+-..+.|..+.+-|+|||.++
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 3322211 11 28999999999875 554 699984222111122345567888888999998654
No 164
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.94 E-value=5.3e-06 Score=71.80 Aligned_cols=99 Identities=18% Similarity=0.207 Sum_probs=75.3
Q ss_pred CCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCCCC---------CC
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNSIP---------AA 220 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~~p---------~~ 220 (309)
.++.+||+||+++|..+..+++..| +.+ ++.+|. |+..+.|++ .+||+++.||..+.++ ..
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~-i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGK-ITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSE-EEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccce-EEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 3568999999999999999999987 477 999998 556666554 2799999999875321 24
Q ss_pred ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
|+|++-. ...+....+..+.+.|+|||.|++-+.++..
T Consensus 123 D~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G 160 (205)
T PF01596_consen 123 DFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLWRG 160 (205)
T ss_dssp EEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTGGG
T ss_pred eEEEEcc-----cccchhhHHHHHhhhccCCeEEEEccccccc
Confidence 9998754 4456678888999999999977777766543
No 165
>PRK04148 hypothetical protein; Provisional
Probab=97.93 E-value=7.3e-05 Score=59.94 Aligned_cols=98 Identities=17% Similarity=0.166 Sum_probs=68.7
Q ss_pred HHhhcCCCCCcceEEEecCCccH-HHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCCCC----CCceee
Q 021707 151 VLDSYNGFKGVKRLVDVGGSAGD-CLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNSIP----AANAIF 224 (309)
Q Consensus 151 ~~~~~~~~~~~~~vlDvG~G~G~-~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~~p----~~D~i~ 224 (309)
+.+.+. -.+..+++|||||.|. ++..|.+. +.. ++++|. |..++.+++. .++++..|+|++-+ .+|+|+
T Consensus 8 l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~-ViaIDi~~~aV~~a~~~-~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 8 IAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFD-VIVIDINEKAVEKAKKL-GLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred HHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCE-EEEEECCHHHHHHHHHh-CCeEEECcCCCCCHHHHhcCCEEE
Confidence 344443 3345789999999996 77777765 456 999998 6666666543 67999999999833 359998
Q ss_pred ehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707 225 MKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV 260 (309)
Q Consensus 225 ~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~ 260 (309)
..+ |+.|...-+.++++... .-++|....
T Consensus 83 sir-----pp~el~~~~~~la~~~~--~~~~i~~l~ 111 (134)
T PRK04148 83 SIR-----PPRDLQPFILELAKKIN--VPLIIKPLS 111 (134)
T ss_pred EeC-----CCHHHHHHHHHHHHHcC--CCEEEEcCC
Confidence 877 55666667777777665 446666433
No 166
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.92 E-value=1.6e-05 Score=68.31 Aligned_cols=111 Identities=15% Similarity=0.212 Sum_probs=75.5
Q ss_pred HHHHHhhcCCCCC--cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-CCceEEeCCCCCCCC--C--
Q 021707 148 MTSVLDSYNGFKG--VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-PGVTHIGGDMFNSIP--A-- 219 (309)
Q Consensus 148 ~~~~~~~~~~~~~--~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-~ri~~~~~d~~~~~p--~-- 219 (309)
....++.++ ++. ..-|||||||+|..+..+... +.. .+++|. |+|++.+.+. -.-.++-+|+-+.+| +
T Consensus 37 ~eRaLELLa-lp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~-wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGt 112 (270)
T KOG1541|consen 37 AERALELLA-LPGPKSGLILDIGCGSGLSGSVLSDS--GHQ-WIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGT 112 (270)
T ss_pred HHHHHHHhh-CCCCCCcEEEEeccCCCcchheeccC--Cce-EEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCc
Confidence 344555554 444 788999999999999888765 455 899998 8899988752 113466678877533 3
Q ss_pred Cceeeeh----hhhh-----cCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 220 ANAIFMK----WVLA-----TWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 220 ~D~i~~~----~vlh-----~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
.|.+|.. |.+| +.|......++..++..|++|++.++. +.|++
T Consensus 113 FDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q--fYpen 164 (270)
T KOG1541|consen 113 FDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ--FYPEN 164 (270)
T ss_pred cceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE--ecccc
Confidence 3766532 3333 234445566788899999999988764 45554
No 167
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.90 E-value=3.3e-05 Score=69.91 Aligned_cols=98 Identities=22% Similarity=0.254 Sum_probs=76.4
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC----------CCceEEeCCCCCC---CCC-Cce
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI----------PGVTHIGGDMFNS---IPA-ANA 222 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~----------~ri~~~~~d~~~~---~p~-~D~ 222 (309)
.++..+||-||+|.|..+.+++++.+.-+ ++++|+ |.|++.+++. +|++++.+|..+. .+. .|+
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~~ve~-i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHLPVER-ITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCCCCeEEEECCCccHHHHHHHhcCCcce-EEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence 34457999999999999999999988777 999999 8888887752 8999999998764 343 599
Q ss_pred eeehhhhhcCChh---HHHHHHHHHHHhcCCCcEEEEe
Q 021707 223 IFMKWVLATWTDD---ECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 223 i~~~~vlh~~~d~---~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
|++--.=.. ... -....++.|+++|+|+|.++..
T Consensus 153 Ii~D~tdp~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVDSTDPV-GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEcCCCCC-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 986443211 110 1258999999999999988887
No 168
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=2.7e-05 Score=66.40 Aligned_cols=99 Identities=16% Similarity=0.158 Sum_probs=72.1
Q ss_pred HHHhhcC-CCCCcceEEEecCCccHHHHHHHHhc--CCCceEEEeec-hhHHhhCCCC----------------CCceEE
Q 021707 150 SVLDSYN-GFKGVKRLVDVGGSAGDCLRMILQKH--HFICEGINFDL-PEVVGEAPSI----------------PGVTHI 209 (309)
Q Consensus 150 ~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-p~~~~~a~~~----------------~ri~~~ 209 (309)
.+++.++ .+..+.++||||+|+|.++..++.-- +... .+++|. |++++..+++ .++.++
T Consensus 71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~-~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv 149 (237)
T KOG1661|consen 71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGN-VHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV 149 (237)
T ss_pred HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCcc-ccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE
Confidence 3444442 25677899999999999999888542 3333 488997 8888776542 578999
Q ss_pred eCCCCCCCCC---CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707 210 GGDMFNSIPA---ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 210 ~~d~~~~~p~---~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
.||-.+-.++ .|.|++.- .+.++.++....|+|||+++|-
T Consensus 150 vGDgr~g~~e~a~YDaIhvGA--------aa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 150 VGDGRKGYAEQAPYDAIHVGA--------AASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred eCCccccCCccCCcceEEEcc--------CccccHHHHHHhhccCCeEEEe
Confidence 9998876544 39998872 2346778888899999999873
No 169
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.89 E-value=3.5e-05 Score=68.42 Aligned_cols=120 Identities=14% Similarity=0.225 Sum_probs=81.9
Q ss_pred HHHHHhhcCCccc----HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHh-cCCCceEEEeec-hhHHhhCCCC-----
Q 021707 135 LMRRAISGVSVPF----MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQK-HHFICEGINFDL-PEVVGEAPSI----- 203 (309)
Q Consensus 135 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-p~~~~~a~~~----- 203 (309)
.|...|...++-. +..++..++ ...+.+|++.|.|+|.++..|++. .|.-+ +..+|. ++..+.|+++
T Consensus 12 ~~~~~l~rrtQIiYpkD~~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~-v~t~E~~~~~~~~A~~n~~~~g 89 (247)
T PF08704_consen 12 LWTLSLPRRTQIIYPKDISYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGH-VYTYEFREDRAEKARKNFERHG 89 (247)
T ss_dssp HHHHTS-SSS----HHHHHHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSE-EEEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHhccCCcceeeCchHHHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeE-EEccccCHHHHHHHHHHHHHcC
Confidence 4555566666643 234667776 888899999999999999999975 58888 999998 5556655542
Q ss_pred --CCceEEeCCCCCC-CC----C-CceeeehhhhhcCChhHHHHHHHHHHHhc-CCCcEEEEeccccCC
Q 021707 204 --PGVTHIGGDMFNS-IP----A-ANAIFMKWVLATWTDDECKLIMENCYKAL-LAGGKLIACEPVLLD 263 (309)
Q Consensus 204 --~ri~~~~~d~~~~-~p----~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL-~pgG~l~i~e~~~~~ 263 (309)
++|++..+|..+. ++ . +|.|++ |+|++- ..+..+.++| +|||++.+.-+....
T Consensus 90 l~~~v~~~~~Dv~~~g~~~~~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~ieQ 151 (247)
T PF08704_consen 90 LDDNVTVHHRDVCEEGFDEELESDFDAVFL-----DLPDPW--EAIPHAKRALKKPGGRICCFSPCIEQ 151 (247)
T ss_dssp CCTTEEEEES-GGCG--STT-TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EEEEEEEEEESSHHH
T ss_pred CCCCceeEecceecccccccccCcccEEEE-----eCCCHH--HHHHHHHHHHhcCCceEEEECCCHHH
Confidence 6899999998653 32 2 488776 667663 6789999999 899999998766553
No 170
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.88 E-value=4.1e-05 Score=69.94 Aligned_cols=89 Identities=16% Similarity=0.260 Sum_probs=63.3
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC-CC
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS-IP 218 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~-~p 218 (309)
...+++..+ .....+|+|||||+|.++..+++.. .+ ++++|+ +.+++.+++ .++++++.+|+.+. .+
T Consensus 25 ~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~--~~-V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~ 100 (294)
T PTZ00338 25 LDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLA--KK-VIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP 100 (294)
T ss_pred HHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhC--Cc-EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc
Confidence 445666664 6667899999999999999999875 35 899998 556665543 36899999999875 44
Q ss_pred CCceeeehhhhhcCChhHHHHHH
Q 021707 219 AANAIFMKWVLATWTDDECKLIM 241 (309)
Q Consensus 219 ~~D~i~~~~vlh~~~d~~~~~iL 241 (309)
..|.|+ .+.-++++.+...++|
T Consensus 101 ~~d~Vv-aNlPY~Istpil~~ll 122 (294)
T PTZ00338 101 YFDVCV-ANVPYQISSPLVFKLL 122 (294)
T ss_pred ccCEEE-ecCCcccCcHHHHHHH
Confidence 457665 4555555555444444
No 171
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.87 E-value=0.00011 Score=67.78 Aligned_cols=105 Identities=11% Similarity=0.197 Sum_probs=75.2
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcC----CCceEEEeech-hHHhh----CC--CCCCceE--EeCCCCC
Q 021707 149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHH----FICEGINFDLP-EVVGE----AP--SIPGVTH--IGGDMFN 215 (309)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~~D~p-~~~~~----a~--~~~ri~~--~~~d~~~ 215 (309)
..+.+.++ ....++|+|||+|.-...|++... ..+ .+.+|++ +.++. .+ ..+.+++ +++|+.+
T Consensus 68 ~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~-Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 68 SDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVD-YYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred HHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCce-EEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 34454443 445899999999998777776653 355 8999984 33433 33 2366666 7788865
Q ss_pred C---CC-----C-Cc-eeeehhhhhcCChhHHHHHHHHHHH-hcCCCcEEEEe
Q 021707 216 S---IP-----A-AN-AIFMKWVLATWTDDECKLIMENCYK-ALLAGGKLIAC 257 (309)
Q Consensus 216 ~---~p-----~-~D-~i~~~~vlh~~~d~~~~~iL~~~~~-aL~pgG~l~i~ 257 (309)
. +| . .. ++++...+.+++++++..+|+++++ .|+||+.++|.
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 4 22 1 24 4556789999999999999999999 99999888774
No 172
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.81 E-value=4.7e-05 Score=72.40 Aligned_cols=98 Identities=17% Similarity=0.094 Sum_probs=68.3
Q ss_pred CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--------CCceEEeCCCCCCC------C-CCce
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--------PGVTHIGGDMFNSI------P-AANA 222 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--------~ri~~~~~d~~~~~------p-~~D~ 222 (309)
.++.+|||+|||+|.++...+.. ...+ ++.+|. +.+++.++++ ++++++.+|+++.. . ..|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~-V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQ-VVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCE-EEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 34679999999999998876643 3346 999998 6677666542 37899999998742 1 2499
Q ss_pred eeehhhhhcCCh-------hHHHHHHHHHHHhcCCCcEEEEec
Q 021707 223 IFMKWVLATWTD-------DECKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 223 i~~~~vlh~~~d-------~~~~~iL~~~~~aL~pgG~l~i~e 258 (309)
|++.----.-+. ..-.++++.+.+.|+|||.++.+.
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 997522100011 124466777889999999999865
No 173
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=1.4e-05 Score=72.97 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=73.4
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeechhHH----hhCCCC---CCceEEeCCCCCC---CCCCceeeehhhhh
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVV----GEAPSI---PGVTHIGGDMFNS---IPAANAIFMKWVLA 230 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~----~~a~~~---~ri~~~~~d~~~~---~p~~D~i~~~~vlh 230 (309)
..+|||||.|.|.-+.++-.-+|+++.+++++.+..+ .....+ .+..+...|+..+ +|.+|.|.+..++|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 4679999999999999999999999867778764333 222221 3333444455443 66678887777776
Q ss_pred cCCh----hHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 231 TWTD----DECKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 231 ~~~d----~~~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
.+-+ ......++.+...+.|||.|+|+|.-.|.
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 6533 33444889999999999999999976665
No 174
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.79 E-value=4.4e-05 Score=77.94 Aligned_cols=96 Identities=13% Similarity=0.087 Sum_probs=70.0
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--------CCceEEeCCCCCCC---CC-Cceeeeh
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--------PGVTHIGGDMFNSI---PA-ANAIFMK 226 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--------~ri~~~~~d~~~~~---p~-~D~i~~~ 226 (309)
++.+|||+|||+|.++..+++.. ..+ ++.+|. +.+++.++++ ++++++.+|.++.+ +. .|+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~-V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKS-TTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCE-EEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 45799999999999999999863 346 999998 6677766642 47999999987642 33 5999974
Q ss_pred hh--hh-----c-CC-hhHHHHHHHHHHHhcCCCcEEEEe
Q 021707 227 WV--LA-----T-WT-DDECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 227 ~v--lh-----~-~~-d~~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
-- .. . +. ...-..+++.+.+.|+|||.+++.
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 11 00 0 10 123467899999999999988765
No 175
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.78 E-value=5.5e-05 Score=74.30 Aligned_cols=96 Identities=15% Similarity=0.187 Sum_probs=69.6
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec--hhHHhhCCC-----CCCceEEeCCCC---CCCCC-C-ceeeehh
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL--PEVVGEAPS-----IPGVTHIGGDMF---NSIPA-A-NAIFMKW 227 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~--p~~~~~a~~-----~~ri~~~~~d~~---~~~p~-~-D~i~~~~ 227 (309)
....+||||||.|.++..+++.+|+.. ++++|. +.+...+++ ..++.++++|+. ..+|. . |.|++.+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~-~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDAL-FIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCC-EEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 357899999999999999999999999 999998 333322221 268888888763 22554 2 7666654
Q ss_pred hhhcCChh-------HHHHHHHHHHHhcCCCcEEEEe
Q 021707 228 VLATWTDD-------ECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 228 vlh~~~d~-------~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
.= -|+.. -....|+.+++.|+|||.|.+.
T Consensus 426 PD-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 426 PD-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CC-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 31 23321 2467899999999999998865
No 176
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.75 E-value=0.00023 Score=62.62 Aligned_cols=96 Identities=18% Similarity=0.163 Sum_probs=62.0
Q ss_pred HHHHhhcCCC-CCcceEEEecCCccHHHHHHHHhcCCCceEEEeechh-HH-hhCCCCCCceEEe-CCCCCC--------
Q 021707 149 TSVLDSYNGF-KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPE-VV-GEAPSIPGVTHIG-GDMFNS-------- 216 (309)
Q Consensus 149 ~~~~~~~~~~-~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~-~~-~~a~~~~ri~~~~-~d~~~~-------- 216 (309)
..+++.+. . .+..++||+|||+|.++..+++. +-.+ ++++|... ++ ...++.+++.... .|+...
T Consensus 64 ~~~l~~~~-~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~-v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d 140 (228)
T TIGR00478 64 KEALEEFN-IDVKNKIVLDVGSSTGGFTDCALQK-GAKE-VYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPD 140 (228)
T ss_pred HHHHHhcC-CCCCCCEEEEcccCCCHHHHHHHHc-CCCE-EEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCC
Confidence 44555554 3 34578999999999999999987 3345 99999933 44 4466666654332 344321
Q ss_pred CCCCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEE-Eec
Q 021707 217 IPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLI-ACE 258 (309)
Q Consensus 217 ~p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~-i~e 258 (309)
++..|+.+++..+ +|..+.+.|+| |.++ ++.
T Consensus 141 ~~~~DvsfiS~~~----------~l~~i~~~l~~-~~~~~L~K 172 (228)
T TIGR00478 141 FATFDVSFISLIS----------ILPELDLLLNP-NDLTLLFK 172 (228)
T ss_pred ceeeeEEEeehHh----------HHHHHHHHhCc-CeEEEEcC
Confidence 1224777766543 57788899999 5554 443
No 177
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.74 E-value=8.9e-05 Score=64.48 Aligned_cols=99 Identities=15% Similarity=0.176 Sum_probs=77.3
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC-------CCceEEe-CCCCCCC-----CCCce
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI-------PGVTHIG-GDMFNSI-----PAANA 222 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~-~d~~~~~-----p~~D~ 222 (309)
..+..+||+||.+.|..++.++...| +.+ .+.+|. |+..+.|+++ ++|+++. ||..+.+ +..|+
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~-l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGR-LTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCe-EEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 45788999999999999999999999 777 999998 7777777753 7788888 5776532 22499
Q ss_pred eeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707 223 IFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL 262 (309)
Q Consensus 223 i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~ 262 (309)
||+=. ...+-.+.|..+.+.|+|||.+++-..+++
T Consensus 136 iFIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 136 VFIDA-----DKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred EEEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 98743 445667889999999999996665555555
No 178
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=6e-05 Score=63.47 Aligned_cols=67 Identities=16% Similarity=0.119 Sum_probs=52.4
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCCCCCCceeeehhhh
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNSIPAANAIFMKWVL 229 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~~p~~D~i~~~~vl 229 (309)
..+|+|+|||+|.+++..+-..|. +++++|. |+.++.++++ .+|.|++.|..+.-...|.++++--+
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~--~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPF 118 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGAS--RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPF 118 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCc--EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCC
Confidence 468999999999999988876543 4899998 7788777764 68999999996654445777776544
No 179
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.73 E-value=0.00011 Score=66.86 Aligned_cols=90 Identities=21% Similarity=0.221 Sum_probs=65.4
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCC-------CCCceEEeCCCCCC-CCC-Cceee---ehhh
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPS-------IPGVTHIGGDMFNS-IPA-ANAIF---MKWV 228 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~-------~~ri~~~~~d~~~~-~p~-~D~i~---~~~v 228 (309)
...|||||||+|.++.-.++.. ..+ +..++.++|.+.|++ .+||++++|.+.+- +|+ +|+++ |.+.
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG-A~~-vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~m 255 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG-AKK-VYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYM 255 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC-cce-EEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhh
Confidence 4789999999999887666553 334 899999888888765 28999999999764 887 59988 4444
Q ss_pred hhcCChhHHHHHHHHHHHhcCCCcEEE
Q 021707 229 LATWTDDECKLIMENCYKALLAGGKLI 255 (309)
Q Consensus 229 lh~~~d~~~~~iL~~~~~aL~pgG~l~ 255 (309)
|. ++...+---.+++-|+|+|+.+
T Consensus 256 L~---NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 256 LV---NERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred hh---hHHHHHHHHHHHhhcCCCCccc
Confidence 42 2322233334678999999765
No 180
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.72 E-value=6.5e-05 Score=69.42 Aligned_cols=64 Identities=9% Similarity=-0.002 Sum_probs=50.1
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCC---CC-Cceeeeh
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSI---PA-ANAIFMK 226 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~---p~-~D~i~~~ 226 (309)
...+|||+|||+|.++..+++. ..+ ++++|. +.+++.++++ ++++++.+|+.+.. .. .|+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~-V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQ-LTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 3579999999999999999985 456 999998 6777776542 57999999986532 12 4998876
No 181
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.72 E-value=0.00014 Score=64.97 Aligned_cols=104 Identities=18% Similarity=0.174 Sum_probs=76.8
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC-CCC--Cceeee
Q 021707 150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS-IPA--ANAIFM 225 (309)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~-~p~--~D~i~~ 225 (309)
.+...++..+....++|+|||.|.+.. .+|.+. .++.|+ ...+..+++.+.......|+.+. .++ .|..+.
T Consensus 35 ~v~qfl~~~~~gsv~~d~gCGngky~~----~~p~~~-~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 35 MVRQFLDSQPTGSVGLDVGCGNGKYLG----VNPLCL-IIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALS 109 (293)
T ss_pred HHHHHHhccCCcceeeecccCCcccCc----CCCcce-eeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchh
Confidence 333333323346789999999998763 458888 999999 45666666554445666788764 433 499999
Q ss_pred hhhhhcCC-hhHHHHHHHHHHHhcCCCcEEEEec
Q 021707 226 KWVLATWT-DDECKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 226 ~~vlh~~~-d~~~~~iL~~~~~aL~pgG~l~i~e 258 (309)
.-++|+|. .....++++++.+.++|||..+|.-
T Consensus 110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 110 IAVIHHLSTRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 99999986 4567899999999999999977654
No 182
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.72 E-value=2.9e-05 Score=74.32 Aligned_cols=97 Identities=18% Similarity=0.339 Sum_probs=66.6
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec------hhHHhhCCCC--CCceEEeCCCCCCCCC-C-ceeeehhhh
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL------PEVVGEAPSI--PGVTHIGGDMFNSIPA-A-NAIFMKWVL 229 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~------p~~~~~a~~~--~ri~~~~~d~~~~~p~-~-D~i~~~~vl 229 (309)
...++||||||+|.|+..++++. ++.+-+ +..+.-|.+. +-+--+-+.-.=++|. + |++.+++++
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~-----V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~ 191 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERN-----VTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCL 191 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCC-----ceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhccccc
Confidence 35789999999999999999884 333332 1222222222 1111111222224665 4 999999999
Q ss_pred hcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707 230 ATWTDDECKLIMENCYKALLAGGKLIACEPVLL 262 (309)
Q Consensus 230 h~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~ 262 (309)
..|...+ -.+|-++-++|+|||++++.-+-..
T Consensus 192 i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 192 IPWHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccchhcc-cceeehhhhhhccCceEEecCCccc
Confidence 9998776 4689999999999999998887665
No 183
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.69 E-value=2.9e-05 Score=69.19 Aligned_cols=99 Identities=22% Similarity=0.232 Sum_probs=72.4
Q ss_pred CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------CCCceEEeCCCCCC---CCC--Cce
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------IPGVTHIGGDMFNS---IPA--ANA 222 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------~~ri~~~~~d~~~~---~p~--~D~ 222 (309)
+++.+||=||+|.|..+.++++..+..+ ++++|+ |.|++.+++ .+|++++.+|.+.. .++ .|+
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~-i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVES-ITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SE-EEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcce-EEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 3578999999999999999997766667 999999 777777654 27999999998653 334 499
Q ss_pred eeehhhhhcCChh--HHHHHHHHHHHhcCCCcEEEEec
Q 021707 223 IFMKWVLATWTDD--ECKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 223 i~~~~vlh~~~d~--~~~~iL~~~~~aL~pgG~l~i~e 258 (309)
|+.--.--.-+.. -..+.++.+++.|+|||.+++.-
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 8862221111111 13579999999999999988876
No 184
>PRK00536 speE spermidine synthase; Provisional
Probab=97.69 E-value=0.00015 Score=64.99 Aligned_cols=90 Identities=13% Similarity=0.055 Sum_probs=67.3
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------CCCceEEeCCCCCCCCC-Cceeee
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------IPGVTHIGGDMFNSIPA-ANAIFM 225 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------~~ri~~~~~d~~~~~p~-~D~i~~ 225 (309)
.+++.+||=||||.|..+.+++++ |. + ++.+|+ +.|++.+++ .+|++++.. +.+..++ .|+|++
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~-v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIv 145 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT-H-VDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIIC 145 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC-e-eEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEE
Confidence 456789999999999999999987 54 7 999999 667777765 288998862 2221223 599986
Q ss_pred hhhhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707 226 KWVLATWTDDECKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 226 ~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e 258 (309)
=.. .+ ....+.++++|+|||.++..-
T Consensus 146 Ds~----~~---~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 146 LQE----PD---IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred cCC----CC---hHHHHHHHHhcCCCcEEEECC
Confidence 532 22 367789999999999877753
No 185
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.59 E-value=0.00013 Score=64.96 Aligned_cols=99 Identities=12% Similarity=0.043 Sum_probs=73.7
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCCCC----------
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNSIP---------- 218 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~~p---------- 218 (309)
..+..+||+||.++|.-++.+++..| +.+ ++.+|. ++..+.|++ .++|+++.||..+.++
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~-v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGK-ILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCE-EEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCC
Confidence 34568999999999999999998875 667 999998 555555543 3899999999876421
Q ss_pred CCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707 219 AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL 262 (309)
Q Consensus 219 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~ 262 (309)
..|+||+=. ....-...+..+.+.|+|||.|++-+.++.
T Consensus 156 ~fD~iFiDa-----dK~~Y~~y~~~~l~ll~~GGviv~DNvl~~ 194 (247)
T PLN02589 156 TFDFIFVDA-----DKDNYINYHKRLIDLVKVGGVIGYDNTLWN 194 (247)
T ss_pred cccEEEecC-----CHHHhHHHHHHHHHhcCCCeEEEEcCCCCC
Confidence 248888743 344566788888899999997665555444
No 186
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.57 E-value=6.4e-05 Score=72.47 Aligned_cols=97 Identities=13% Similarity=0.249 Sum_probs=66.2
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCC----
Q 021707 150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIP---- 218 (309)
Q Consensus 150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p---- 218 (309)
.+.+.+. ..+..+|+|+|||+|.++..+++.. .+ ++++|. +.+++.++++ .+++++.+|+.+.++
T Consensus 283 ~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~--~~-V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~ 358 (431)
T TIGR00479 283 RALEALE-LQGEELVVDAYCGVGTFTLPLAKQA--KS-VVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPW 358 (431)
T ss_pred HHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC--CE-EEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHh
Confidence 3444443 5556799999999999999999875 35 999998 7788777653 689999999864211
Q ss_pred --C-CceeeehhhhhcCChhH-HHHHHHHHHHhcCCCcEEEE
Q 021707 219 --A-ANAIFMKWVLATWTDDE-CKLIMENCYKALLAGGKLIA 256 (309)
Q Consensus 219 --~-~D~i~~~~vlh~~~d~~-~~~iL~~~~~aL~pgG~l~i 256 (309)
. .|+|++.- |... ...+++.+.+ ++|++.+++
T Consensus 359 ~~~~~D~vi~dP-----Pr~G~~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 359 AGQIPDVLLLDP-----PRKGCAAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred cCCCCCEEEECc-----CCCCCCHHHHHHHHh-cCCCEEEEE
Confidence 2 38887632 2111 2355655543 788876655
No 187
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.52 E-value=0.00011 Score=62.81 Aligned_cols=95 Identities=14% Similarity=0.072 Sum_probs=60.6
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC---C--CC--Cceeee
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS---I--PA--ANAIFM 225 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~---~--p~--~D~i~~ 225 (309)
+.+|||++||+|.++.+++.+... + ++.+|. +..++.++++ ++++++.+|.++. . .. .|+|++
T Consensus 50 g~~vLDLfaGsG~lglea~srga~-~-v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAK-V-AFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCC-E-EEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 468999999999999999999753 6 899998 5555554432 5789999998653 1 12 366665
Q ss_pred hhhhhcCChhHHHHHHHHHHH--hcCCCcEEEEecccc
Q 021707 226 KWVLATWTDDECKLIMENCYK--ALLAGGKLIACEPVL 261 (309)
Q Consensus 226 ~~vlh~~~d~~~~~iL~~~~~--aL~pgG~l~i~e~~~ 261 (309)
-=-... ....++++.+.+ .|+++| ++++|...
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~~~~-iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILEDTV-LIVVEEDR 161 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCCCCe-EEEEEecC
Confidence 322221 112344544433 466666 55665443
No 188
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.46 E-value=0.00025 Score=65.40 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=68.4
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--------CCceEEe----CCCCCCC--CC--Cce
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--------PGVTHIG----GDMFNSI--PA--ANA 222 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--------~ri~~~~----~d~~~~~--p~--~D~ 222 (309)
...++||||||+|.....++.+.++.+ ++++|+ +..++.|+++ ++|+++. .++++.. +. .|+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~-~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWR-FVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCE-EEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 457999999999999999998889999 999998 6666666532 4777754 2444432 22 499
Q ss_pred eeehhhhhcCChhH---HHHHHHHHH----------------HhcCCCcEEEEeccccCCC
Q 021707 223 IFMKWVLATWTDDE---CKLIMENCY----------------KALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 223 i~~~~vlh~~~d~~---~~~iL~~~~----------------~aL~pgG~l~i~e~~~~~~ 264 (309)
|+++=-+|.-.++. ..+-.++.. +.+.+||.+-++..+..+.
T Consensus 193 ivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS 253 (321)
T PRK11727 193 TLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES 253 (321)
T ss_pred EEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH
Confidence 99998777544331 222233332 2344677766666655554
No 189
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.45 E-value=0.00023 Score=64.87 Aligned_cols=66 Identities=24% Similarity=0.222 Sum_probs=54.5
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC----CCceEEeCCCCC
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI----PGVTHIGGDMFN 215 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~----~ri~~~~~d~~~ 215 (309)
...+++.+. ......++|++||.|.++..+++.+| +.+ ++++|. |.+++.+++. +|++++.+|+.+
T Consensus 8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~-VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~ 79 (296)
T PRK00050 8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGR-LIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN 79 (296)
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCE-EEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence 456777774 55667999999999999999999996 678 999999 7788777643 589999999875
No 190
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.43 E-value=0.00014 Score=61.76 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=66.3
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhC-------CC------CCCceEEeCCCCCCCCC----C--
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEA-------PS------IPGVTHIGGDMFNSIPA----A-- 220 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a-------~~------~~ri~~~~~d~~~~~p~----~-- 220 (309)
...++|||||.|.++..|...||+.- ++++++ -.|.+.. +. ..++.+...+.+...|+ +
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtL-iLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTL-ILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred cceEEeeccCccchhhhccccCccce-eeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 35699999999999999999999999 999997 2333222 21 26678887777666665 1
Q ss_pred -ceeeehhhhhcCChh-----HHHHHHHHHHHhcCCCcEEEEeccc
Q 021707 221 -NAIFMKWVLATWTDD-----ECKLIMENCYKALLAGGKLIACEPV 260 (309)
Q Consensus 221 -D~i~~~~vlh~~~d~-----~~~~iL~~~~~aL~pgG~l~i~e~~ 260 (309)
-..++.---|.+... -...++.+..=.|++||.++.+.-+
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 122222222333222 1356778888889999999876543
No 191
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.42 E-value=0.0002 Score=67.83 Aligned_cols=89 Identities=10% Similarity=-0.034 Sum_probs=60.6
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCC----CCCceeeehhhh
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSI----PAANAIFMKWVL 229 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~----p~~D~i~~~~vl 229 (309)
..+|+|+|||+|.++..++.. ..+ ++++|. +..++.++++ ++++++.+|+.+.. ...|+|++.=-
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~--~~~-v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP- 309 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP--DTQ-LTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP- 309 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc--CCe-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC-
Confidence 468999999999999999965 356 999998 6677766542 57999999986532 22598887522
Q ss_pred hcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707 230 ATWTDDECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 230 h~~~d~~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
.. . -..++++.+. .++|++.+++.
T Consensus 310 r~-G--~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 310 RR-G--IGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CC-C--CcHHHHHHHH-hcCCCeEEEEE
Confidence 11 1 1124444443 37888766655
No 192
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.42 E-value=0.00024 Score=65.21 Aligned_cols=94 Identities=17% Similarity=0.145 Sum_probs=65.0
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCC-------CCCceEEeCCCCCC-CC-C-Cceeeehhhh
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPS-------IPGVTHIGGDMFNS-IP-A-ANAIFMKWVL 229 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~-------~~ri~~~~~d~~~~-~p-~-~D~i~~~~vl 229 (309)
+...|||||||+|-++.-.+++. ..+ +.++|.+.+...+.+ .+.|+++.|...+- +| + .|+|+.-|.=
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~-V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARK-VYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cce-EEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 45799999999999999888886 445 999999887776654 26689999887654 66 3 4999853322
Q ss_pred hcC-ChhHHHHHHHHHHHhcCCCcEEE
Q 021707 230 ATW-TDDECKLIMENCYKALLAGGKLI 255 (309)
Q Consensus 230 h~~-~d~~~~~iL~~~~~aL~pgG~l~ 255 (309)
+.+ -+.-...+|-.==+-|+|||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 221 12222334444456789999765
No 193
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.23 E-value=0.0007 Score=62.42 Aligned_cols=95 Identities=21% Similarity=0.306 Sum_probs=71.8
Q ss_pred CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------------CCCceEEeCCCCCCCCC----C
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------------IPGVTHIGGDMFNSIPA----A 220 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------------~~ri~~~~~d~~~~~p~----~ 220 (309)
++..+++-+|||.|..+.+++ +||+..+++.+|+ |.|++.++. .+|++++.-|.++-... .
T Consensus 288 ~~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 356799999999999999987 6797655999999 889988873 18999999998875322 2
Q ss_pred ceeeehhhhhcCChhH--------HHHHHHHHHHhcCCCcEEEEecc
Q 021707 221 NAIFMKWVLATWTDDE--------CKLIMENCYKALLAGGKLIACEP 259 (309)
Q Consensus 221 D~i~~~~vlh~~~d~~--------~~~iL~~~~~aL~pgG~l~i~e~ 259 (309)
|.++. |++|+. ..+.-+-++++|+++|.+++...
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 66553 444432 34667778899999998887653
No 194
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.16 E-value=0.00026 Score=60.15 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=68.0
Q ss_pred eEEEecCCccHHHHHHHHhcCCCceEEEeec-h---hHHhhCCC---CCCceEEeCCCCCC-CCC-CceeeehhhhhcCC
Q 021707 163 RLVDVGGSAGDCLRMILQKHHFICEGINFDL-P---EVVGEAPS---IPGVTHIGGDMFNS-IPA-ANAIFMKWVLATWT 233 (309)
Q Consensus 163 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p---~~~~~a~~---~~ri~~~~~d~~~~-~p~-~D~i~~~~vlh~~~ 233 (309)
+++|||+|.|.=++-++=.+|+.+ ++.+|. . ..++.+.. .++++++++...+. .+. .|+|+++-+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~-~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~---- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQ-VTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA---- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSE-EEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCc-EEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc----
Confidence 899999999999999999999999 999997 1 23333322 37899999888662 333 4999988763
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707 234 DDECKLIMENCYKALLAGGKLIACEP 259 (309)
Q Consensus 234 d~~~~~iL~~~~~aL~pgG~l~i~e~ 259 (309)
....++.-+...+++||+++..-.
T Consensus 126 --~l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 126 --PLDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp --SHHHHHHHHGGGEEEEEEEEEEES
T ss_pred --CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 234788888889999999998854
No 195
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.13 E-value=0.0011 Score=55.88 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=72.9
Q ss_pred ceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC-CCCCceeeehhhhhcCC
Q 021707 162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-IPAANAIFMKWVLATWT 233 (309)
Q Consensus 162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-~p~~D~i~~~~vlh~~~ 233 (309)
..+.|+|.|+|-++.-.+++ .-+ ++.++. |...+.+.++ .+++++.||..+. +..+|+|+|-..=--+-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~r-ViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi 110 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AER-VIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALI 110 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hce-EEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhh
Confidence 47899999999988766655 224 899998 6666666664 7899999999885 76689998765433344
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707 234 DDECKLIMENCYKALLAGGKLIACEPVL 261 (309)
Q Consensus 234 d~~~~~iL~~~~~aL~pgG~l~i~e~~~ 261 (309)
+++.+.+++.+.+-|+-+++++=.+...
T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiPq~v~~ 138 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTIIPQEVRI 138 (252)
T ss_pred cccccHHHHHHHHHhhcCCccccHHHhh
Confidence 5566889999999999888887555433
No 196
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.12 E-value=0.0011 Score=58.79 Aligned_cols=74 Identities=15% Similarity=0.339 Sum_probs=58.1
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC-CC
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS-IP 218 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~-~p 218 (309)
.+.+++.-+ ......||+||.|+|.++..++++. .+ ++.++. |.++++..+ ..+.+++.||+++- +|
T Consensus 47 ~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~--kk-VvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 47 IDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAG--KK-VVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP 122 (315)
T ss_pred HHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhc--Ce-EEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence 445666665 6677899999999999999999984 45 888888 677776544 26899999999975 77
Q ss_pred CCceeee
Q 021707 219 AANAIFM 225 (309)
Q Consensus 219 ~~D~i~~ 225 (309)
-.|.++.
T Consensus 123 ~fd~cVs 129 (315)
T KOG0820|consen 123 RFDGCVS 129 (315)
T ss_pred ccceeec
Confidence 7777765
No 197
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=97.06 E-value=0.00023 Score=47.19 Aligned_cols=45 Identities=27% Similarity=0.283 Sum_probs=34.1
Q ss_pred chhhhhhhhhhcCC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHH
Q 021707 4 NECRDGRKKVRLAN--TPLSVSQILTCILPSGGGDAENLQCILRLLT 48 (309)
Q Consensus 4 ~~~~~g~~~~~l~~--~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~ 48 (309)
..+++|+||.+... +++|.+||+.+++.++..++..|.|+||+|+
T Consensus 5 ~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 5 CAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 46789999988654 5999999999993232344679999999985
No 198
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.0032 Score=56.16 Aligned_cols=84 Identities=11% Similarity=0.187 Sum_probs=59.7
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC----CCCCceEEeCCCCCC-CCC--
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP----SIPGVTHIGGDMFNS-IPA-- 219 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~----~~~ri~~~~~d~~~~-~p~-- 219 (309)
.+.+++..+ ......|++||+|.|.++..|+++... ++++++ +.+++..+ ..++++++.+|+.+. +|.
T Consensus 19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~---v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAAR---VTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCe---EEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhc
Confidence 566777775 656789999999999999999999765 666666 33343333 358999999999985 664
Q ss_pred CceeeehhhhhcCChh
Q 021707 220 ANAIFMKWVLATWTDD 235 (309)
Q Consensus 220 ~D~i~~~~vlh~~~d~ 235 (309)
.-..+.+|.-++.+.+
T Consensus 95 ~~~~vVaNlPY~Issp 110 (259)
T COG0030 95 QPYKVVANLPYNISSP 110 (259)
T ss_pred CCCEEEEcCCCcccHH
Confidence 2344455555666554
No 199
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.98 E-value=0.001 Score=57.57 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=52.8
Q ss_pred EEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCCCCC---CceeeehhhhhcC
Q 021707 164 LVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNSIPA---ANAIFMKWVLATW 232 (309)
Q Consensus 164 vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~~p~---~D~i~~~~vlh~~ 232 (309)
|+||||.+|.+...|++...--+ ++..|. +.-++.|++ .++|++..+|-++.++. .|+|++.-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~-~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM---- 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPK-AIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM---- 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEE-EEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE----
T ss_pred CceeccchhHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----
Confidence 68999999999999999987777 999998 444444433 38999999998887543 467665432
Q ss_pred ChhHHHHHHHHHHHhcC
Q 021707 233 TDDECKLIMENCYKALL 249 (309)
Q Consensus 233 ~d~~~~~iL~~~~~aL~ 249 (309)
......+||.+....++
T Consensus 76 GG~lI~~ILe~~~~~~~ 92 (205)
T PF04816_consen 76 GGELIIEILEAGPEKLS 92 (205)
T ss_dssp -HHHHHHHHHHTGGGGT
T ss_pred CHHHHHHHHHhhHHHhc
Confidence 33344455555544443
No 200
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.94 E-value=0.0066 Score=47.69 Aligned_cols=96 Identities=16% Similarity=0.260 Sum_probs=63.9
Q ss_pred EEEecCCccHHHHHHHHhcCC-CceEEEeec-hhHHhhCCCC---CC---ceEEeCCCCC---CCCC---Cceeeehhhh
Q 021707 164 LVDVGGSAGDCLRMILQKHHF-ICEGINFDL-PEVVGEAPSI---PG---VTHIGGDMFN---SIPA---ANAIFMKWVL 229 (309)
Q Consensus 164 vlDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-p~~~~~a~~~---~r---i~~~~~d~~~---~~p~---~D~i~~~~vl 229 (309)
++|+|||+|... .+....+. .. ++++|. +.++...+.. .. +.+..+|... +++. .|++ .....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAY-VVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCce-EEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence 999999999976 33333333 35 778887 4444443221 11 5788888765 2333 3888 44444
Q ss_pred hcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 230 ATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 230 h~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
+++.+ ....++++.+.++|+|.+++.+......
T Consensus 129 ~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (257)
T COG0500 129 LHLLP--PAKALRELLRVLKPGGRLVLSDLLRDGL 161 (257)
T ss_pred hhcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCC
Confidence 44433 4689999999999999999988776554
No 201
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.85 E-value=0.003 Score=52.93 Aligned_cols=101 Identities=10% Similarity=0.154 Sum_probs=69.1
Q ss_pred cceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCC-----CCCceEEeCCCCCCC-CC-Cceeeehh--hh
Q 021707 161 VKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPS-----IPGVTHIGGDMFNSI-PA-ANAIFMKW--VL 229 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~-----~~ri~~~~~d~~~~~-p~-~D~i~~~~--vl 229 (309)
..-+++||||+|..+.-|.+.. |+.. ....|+ |+.++...+ .-++..+..|++..+ ++ .|+++++- +.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~-~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQAL-YLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCce-EEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCc
Confidence 4679999999999998888765 6777 888998 666665433 245778888887653 23 37766652 22
Q ss_pred h------------cCC-----hhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707 230 A------------TWT-----DDECKLIMENCYKALLAGGKLIACEPVLL 262 (309)
Q Consensus 230 h------------~~~-----d~~~~~iL~~~~~aL~pgG~l~i~e~~~~ 262 (309)
- -|. .+-..++|.++-..|.|.|.++++-.-..
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN 172 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence 1 122 11245788888888999999998854433
No 202
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.85 E-value=0.0006 Score=58.74 Aligned_cols=90 Identities=18% Similarity=0.201 Sum_probs=62.0
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCCCCC--Cceeeehh
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNSIPA--ANAIFMKW 227 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~~p~--~D~i~~~~ 227 (309)
...+.+|+|.-||.|.+++.+++..+..+ ++..|+ |..++..++ .++|..+.+|..+..+. +|-|+|..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~-V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKR-VYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSE-EEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccE-EEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC
Confidence 34578999999999999999999777777 999998 666655543 27899999999776543 48888765
Q ss_pred hhhcCChhHHHHHHHHHHHhcCCCcEE
Q 021707 228 VLATWTDDECKLIMENCYKALLAGGKL 254 (309)
Q Consensus 228 vlh~~~d~~~~~iL~~~~~aL~pgG~l 254 (309)
. . .+.+.|..+.+.+++||.+
T Consensus 178 p-----~-~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 178 P-----E-SSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp T-----S-SGGGGHHHHHHHEEEEEEE
T ss_pred h-----H-HHHHHHHHHHHHhcCCcEE
Confidence 3 2 2346788888888888765
No 203
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.83 E-value=0.0021 Score=57.77 Aligned_cols=95 Identities=15% Similarity=0.256 Sum_probs=65.5
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC----CCCCceEEeCCCCCC-CCC--
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP----SIPGVTHIGGDMFNS-IPA-- 219 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~----~~~ri~~~~~d~~~~-~p~-- 219 (309)
.+.+++.++ ......|+|||+|.|.++..|++.. .+ ++++|. +..++..+ ..++++++.+|+++- .+.
T Consensus 19 ~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~-v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 19 ADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KR-VIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp HHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SE-EEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--Cc-ceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhh
Confidence 456777775 6678899999999999999999998 45 889987 44444433 358999999999975 333
Q ss_pred --CceeeehhhhhcCChhHHHHHHHHHHHhcCC
Q 021707 220 --ANAIFMKWVLATWTDDECKLIMENCYKALLA 250 (309)
Q Consensus 220 --~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p 250 (309)
....+..+.-++.+ ..++.++...-+.
T Consensus 95 ~~~~~~vv~NlPy~is----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 95 KNQPLLVVGNLPYNIS----SPILRKLLELYRF 123 (262)
T ss_dssp SSSEEEEEEEETGTGH----HHHHHHHHHHGGG
T ss_pred cCCceEEEEEecccch----HHHHHHHhhcccc
Confidence 34555555544333 3566666653333
No 204
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.79 E-value=0.0067 Score=58.98 Aligned_cols=102 Identities=18% Similarity=0.228 Sum_probs=69.4
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCC---CCC-Cceee--
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNS---IPA-ANAIF-- 224 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~---~p~-~D~i~-- 224 (309)
.+.+.+|||++++.|.=+..+++...+-..++..|. +.-+...++ ..++.+...|.... ++. .|.|+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 456789999999999999999998765322899998 343433332 25677777776532 344 48887
Q ss_pred --eh---------hhhhcCChhH-------HHHHHHHHHHhcCCCcEEEEeccc
Q 021707 225 --MK---------WVLATWTDDE-------CKLIMENCYKALLAGGKLIACEPV 260 (309)
Q Consensus 225 --~~---------~vlh~~~d~~-------~~~iL~~~~~aL~pgG~l~i~e~~ 260 (309)
|+ .+...|+.++ -.+||.++.+.|+|||+|+ .-++
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LV-YSTC 243 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLV-YSTC 243 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEE-EECC
Confidence 33 1223455433 2789999999999999875 4444
No 205
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.79 E-value=0.0026 Score=51.64 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=52.2
Q ss_pred CCcceEEEecCCccHHHHHHHHh----cCCCceEEEeec-hhHHhhCCC---------CCCceEEeCCCCCC-CCC-Cce
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQK----HHFICEGINFDL-PEVVGEAPS---------IPGVTHIGGDMFNS-IPA-ANA 222 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~~D~-p~~~~~a~~---------~~ri~~~~~d~~~~-~p~-~D~ 222 (309)
....+|+|+|||.|.++..++.. .|+++ ++++|. +..++.+.+ ..++++..+++... ... .++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLR-VLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCe-EEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 45789999999999999999982 27888 999997 444444332 15566666665433 222 377
Q ss_pred eeehhhhhcCChh
Q 021707 223 IFMKWVLATWTDD 235 (309)
Q Consensus 223 i~~~~vlh~~~d~ 235 (309)
++--|..-++++.
T Consensus 103 ~vgLHaCG~Ls~~ 115 (141)
T PF13679_consen 103 LVGLHACGDLSDR 115 (141)
T ss_pred EEEeecccchHHH
Confidence 7777777666653
No 206
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.78 E-value=0.0024 Score=55.49 Aligned_cols=95 Identities=17% Similarity=0.157 Sum_probs=69.0
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeec----hhHHhhCCC---CCCceEEeCCCCCCC--CC-Cceeeehhhhh
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL----PEVVGEAPS---IPGVTHIGGDMFNSI--PA-ANAIFMKWVLA 230 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~----p~~~~~a~~---~~ri~~~~~d~~~~~--p~-~D~i~~~~vlh 230 (309)
..+++|||.|.|.=++-++=.+|+.+ ++.+|. -..++.+.+ .++++++++-+.+.. +. .|+|..+-+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~-vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLK-VTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCc-EEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc-
Confidence 58999999999999999999999999 999997 234444433 378999988775542 24 7888877652
Q ss_pred cCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707 231 TWTDDECKLIMENCYKALLAGGKLIACEPVLL 262 (309)
Q Consensus 231 ~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~ 262 (309)
....++.-+..-+++||.++..-...-
T Consensus 146 -----~L~~l~e~~~pllk~~g~~~~~k~~~~ 172 (215)
T COG0357 146 -----SLNVLLELCLPLLKVGGGFLAYKGLAG 172 (215)
T ss_pred -----chHHHHHHHHHhcccCCcchhhhHHhh
Confidence 234566667777788887765544433
No 207
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.76 E-value=0.00099 Score=56.26 Aligned_cols=107 Identities=18% Similarity=0.210 Sum_probs=62.2
Q ss_pred HHHHhhcCCCC--CcceEEEecCCccHHHHHHHHhc-CCCceEEEeechhHHhhCCCCCCceEEeCCCCCC---------
Q 021707 149 TSVLDSYNGFK--GVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNS--------- 216 (309)
Q Consensus 149 ~~~~~~~~~~~--~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~--------- 216 (309)
..+.+.++-+. +..++||+||++|.++..++++. +..+ ++++|+...- ....+.++.+|+.++
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~-v~avDl~~~~----~~~~~~~i~~d~~~~~~~~~i~~~ 84 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGR-VVAVDLGPMD----PLQNVSFIQGDITNPENIKDIRKL 84 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEE-EEEEESSSTG----S-TTEEBTTGGGEEEEHSHHGGGS
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccce-EEEEeccccc----cccceeeeecccchhhHHHhhhhh
Confidence 34555554133 45899999999999999999998 6667 9999995441 114445545554432
Q ss_pred CC----CCceeeehh---hhhc--CC----hhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707 217 IP----AANAIFMKW---VLAT--WT----DDECKLIMENCYKALLAGGKLIACEPV 260 (309)
Q Consensus 217 ~p----~~D~i~~~~---vlh~--~~----d~~~~~iL~~~~~aL~pgG~l~i~e~~ 260 (309)
.+ ..|+|++=- +-.+ .. -.-+...|.-+.+.|+|||.+++--.-
T Consensus 85 ~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 85 LPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp HGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred ccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 11 237777432 1111 11 122444455556678999987765443
No 208
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.76 E-value=0.0023 Score=60.72 Aligned_cols=90 Identities=10% Similarity=0.017 Sum_probs=67.9
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCC---CCceeeehhhhh
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIP---AANAIFMKWVLA 230 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p---~~D~i~~~~vlh 230 (309)
..+|+|++||+|.+++.++.+.+..+ +++.|. |..++.++++ +++++..+|..+... ..|+|++-- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~-V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEK-VTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence 35899999999999999998877556 999998 6677766543 456788888755322 359988842 1
Q ss_pred cCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707 231 TWTDDECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 231 ~~~d~~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
.. ....|..+.+.++|||.+.+.
T Consensus 135 --Gs--~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 --GS--PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred --CC--cHHHHHHHHHHhcCCCEEEEE
Confidence 21 246788878889999999998
No 209
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.67 E-value=0.013 Score=50.35 Aligned_cols=108 Identities=19% Similarity=0.268 Sum_probs=74.4
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeechhHHhhCCCCCCceEEeCCCCCC---------C
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDLPEVVGEAPSIPGVTHIGGDMFNS---------I 217 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~---------~ 217 (309)
..++.+.+.-+.++..|+|+|+..|.++..+++... ..+ ++++|+-++-. .++|.++.+|++.+ +
T Consensus 33 L~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~-ivavDi~p~~~----~~~V~~iq~d~~~~~~~~~l~~~l 107 (205)
T COG0293 33 LLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGK-IVAVDILPMKP----IPGVIFLQGDITDEDTLEKLLEAL 107 (205)
T ss_pred HHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCc-EEEEECccccc----CCCceEEeeeccCccHHHHHHHHc
Confidence 344566664456789999999999999998888764 456 89999855422 35699999999865 2
Q ss_pred CC--Cceeee---hhhhhcCC------hhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707 218 PA--ANAIFM---KWVLATWT------DDECKLIMENCYKALLAGGKLIACEPV 260 (309)
Q Consensus 218 p~--~D~i~~---~~vlh~~~------d~~~~~iL~~~~~aL~pgG~l~i~e~~ 260 (309)
+. .|+|+. .++--.|. -.-+...+.-+.+.|+|||.+++-.+-
T Consensus 108 ~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 108 GGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred CCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 22 378772 22222222 223556677778899999988877543
No 210
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=96.63 E-value=0.0041 Score=43.89 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=48.6
Q ss_pred hhhhhhhhhhcCCCC--CCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707 5 ECRDGRKKVRLANTP--LSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE 69 (309)
Q Consensus 5 ~~~~g~~~~~l~~~~--~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~ 69 (309)
.++..+.+++...++ +|+.|||+.+ |++...+.+.|..|...|+|...++ .++.|.++.
T Consensus 6 ~~~~~IL~~L~~~g~~~~ta~eLa~~l----gl~~~~v~r~L~~L~~~G~V~~~~~--~~~~W~i~~ 66 (68)
T smart00550 6 SLEEKILEFLENSGDETSTALQLAKNL----GLPKKEVNRVLYSLEKKGKVCKQGG--TPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEecCC--CCCceEeec
Confidence 455667777766666 9999999999 9999999999999999999988652 146788764
No 211
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=96.57 E-value=0.0042 Score=53.95 Aligned_cols=91 Identities=21% Similarity=0.212 Sum_probs=65.9
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--CCc--eEEeCCCCC-CCCC--CceeeehhhhhcC
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--PGV--THIGGDMFN-SIPA--ANAIFMKWVLATW 232 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--~ri--~~~~~d~~~-~~p~--~D~i~~~~vlh~~ 232 (309)
...++|||||.|+....+..+. +...+.+|. -.|++.++.. +.| ....+|-.. ++.+ .|+++.+..+|-.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 5689999999999999998876 323788998 4677777653 333 333344322 2433 3999999999854
Q ss_pred ChhHHHHHHHHHHHhcCCCcEEE
Q 021707 233 TDDECKLIMENCYKALLAGGKLI 255 (309)
Q Consensus 233 ~d~~~~~iL~~~~~aL~pgG~l~ 255 (309)
++ ...-+.+|+.+|||+|.++
T Consensus 151 Nd--LPg~m~~ck~~lKPDg~Fi 171 (325)
T KOG2940|consen 151 ND--LPGSMIQCKLALKPDGLFI 171 (325)
T ss_pred cc--CchHHHHHHHhcCCCccch
Confidence 44 3678999999999999655
No 212
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=96.51 E-value=0.0016 Score=45.89 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=41.7
Q ss_pred hhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 7 RDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 7 ~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
+.-+...++.+++.|++|||+.+ |++...+.+.|+-|...|+|.+.+
T Consensus 10 E~~vy~~Ll~~~~~t~~eIa~~l----~i~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 10 EAKVYLALLKNGPATAEEIAEEL----GISRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp HHHHHHHHHHHCHEEHHHHHHHH----TSSHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEEc
Confidence 34455566678999999999999 999999999999999999999886
No 213
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=96.51 E-value=0.0052 Score=45.54 Aligned_cols=56 Identities=13% Similarity=0.181 Sum_probs=45.9
Q ss_pred hhhhhhcCC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707 9 GRKKVRLAN-TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG 71 (309)
Q Consensus 9 g~~~~~l~~-~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~ 71 (309)
.+++.+... ++.|..|||+.+ |++...+.|.|..|+..|++.... .++.|++++..
T Consensus 9 ~Il~~l~~~~~~~t~~~ia~~l----~i~~~tv~r~l~~L~~~g~l~~~~---~~~~y~l~~~~ 65 (91)
T smart00346 9 AVLRALAEEPGGLTLAELAERL----GLSKSTAHRLLNTLQELGYVEQDG---QNGRYRLGPKV 65 (91)
T ss_pred HHHHHHHhCCCCcCHHHHHHHh----CCCHHHHHHHHHHHHHCCCeeecC---CCCceeecHHH
Confidence 344544444 789999999999 999999999999999999999874 15689998744
No 214
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.49 E-value=0.0039 Score=54.33 Aligned_cols=94 Identities=21% Similarity=0.227 Sum_probs=69.6
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--------CCceEEeCCCCCC---CCC--Ccee
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--------PGVTHIGGDMFNS---IPA--ANAI 223 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--------~ri~~~~~d~~~~---~p~--~D~i 223 (309)
-+.+.+|||...|-|.++++.+++.. .. ++-++- |.|++.++-+ .+|+++.||.++. ++. .|+|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA-~~-VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA-IH-VITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC-cE-EEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 34678999999999999999999853 13 555554 7888777643 4689999998865 444 3877
Q ss_pred eehhhhhcCC------hhHHHHHHHHHHHhcCCCcEEEEec
Q 021707 224 FMKWVLATWT------DDECKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 224 ~~~~vlh~~~------d~~~~~iL~~~~~aL~pgG~l~i~e 258 (309)
+ ||-| .--..++-+++++.|+|||+++-.-
T Consensus 210 i-----HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 210 I-----HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred e-----eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 6 3322 2235678999999999999998663
No 215
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.49 E-value=0.014 Score=52.46 Aligned_cols=97 Identities=14% Similarity=0.193 Sum_probs=70.3
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeech--------hHHhhCCC-----------------------------
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP--------EVVGEAPS----------------------------- 202 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p--------~~~~~a~~----------------------------- 202 (309)
...+||-=|||-|+++.+++++ +.. +.+.|++ -++....+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~-~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYA-VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cce-EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 3579999999999999999999 445 6777762 12222111
Q ss_pred ----------CCCceEEeCCCCCCC--C---CC-ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707 203 ----------IPGVTHIGGDMFNSI--P---AA-NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL 261 (309)
Q Consensus 203 ----------~~ri~~~~~d~~~~~--p---~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~ 261 (309)
..+++..+|||.+.. + .. |+|+..+.+. +.....+-|..|++.|||||.++=+-+++
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID--TA~Ni~~Yi~tI~~lLkpgG~WIN~GPLl 205 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID--TAENIIEYIETIEHLLKPGGYWINFGPLL 205 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee--chHHHHHHHHHHHHHhccCCEEEecCCcc
Confidence 036888999998752 2 23 9998887664 34457899999999999999777665554
No 216
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.47 E-value=0.0032 Score=50.76 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=40.6
Q ss_pred eEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCC
Q 021707 163 RLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMF 214 (309)
Q Consensus 163 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~ 214 (309)
+++|||||.|.++..+++.+|..+ ++++|. |.+.+.++++ ++++++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~-v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGR-VIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCE-EEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 589999999999999999999988 999998 6666555432 45777776554
No 217
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.46 E-value=0.003 Score=50.98 Aligned_cols=76 Identities=14% Similarity=0.109 Sum_probs=53.7
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCCCCC---Cc
Q 021707 151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNSIPA---AN 221 (309)
Q Consensus 151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~~p~---~D 221 (309)
+-+.++ --.+.++.|+|||.|.+.. +-.+|..+.++++|+ |+.++....+ -++.+.+.|+.+..+. .|
T Consensus 40 Ih~Tyg-diEgkkl~DLgcgcGmLs~--a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fD 116 (185)
T KOG3420|consen 40 IHNTYG-DIEGKKLKDLGCGCGMLSI--AFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFD 116 (185)
T ss_pred HHhhhc-cccCcchhhhcCchhhhHH--HhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEe
Confidence 334443 2245789999999999994 455677666899999 8888887764 4578888888776443 27
Q ss_pred eeeehhhh
Q 021707 222 AIFMKWVL 229 (309)
Q Consensus 222 ~i~~~~vl 229 (309)
..+++--+
T Consensus 117 taviNppF 124 (185)
T KOG3420|consen 117 TAVINPPF 124 (185)
T ss_pred eEEecCCC
Confidence 77765544
No 218
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.46 E-value=0.00083 Score=55.83 Aligned_cols=62 Identities=19% Similarity=0.299 Sum_probs=44.9
Q ss_pred ceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCCCC-----C-Cceeeeh
Q 021707 162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNSIP-----A-ANAIFMK 226 (309)
Q Consensus 162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~~p-----~-~D~i~~~ 226 (309)
..|+|+-||.|..++.+++.+.. ++.+|. |..++.++. .+||+++.+|+++..+ . .|+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~---Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDR---VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-E---EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCCe---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 36999999999999999999754 889998 555665553 2799999999987522 2 4888865
No 219
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.45 E-value=0.0088 Score=55.35 Aligned_cols=97 Identities=16% Similarity=0.118 Sum_probs=69.5
Q ss_pred CCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCCCCceEEeCCCCCCCC-C--CceeeehhhhhcCChh
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIP-A--ANAIFMKWVLATWTDD 235 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~~p-~--~D~i~~~~vlh~~~d~ 235 (309)
..+.++|||||++|.++..++++ +.+ ++++|...+.......++|+.+.+|.+...| . .|++++=.+. .+.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~-V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve---~P~ 283 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMF-VTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE---KPA 283 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCE-EEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc---CHH
Confidence 45789999999999999999998 457 9999987777777778999999999988654 2 3888876653 233
Q ss_pred HHHHHHHHHHHhcCCC-cEEEEeccccCCC
Q 021707 236 ECKLIMENCYKALLAG-GKLIACEPVLLDD 264 (309)
Q Consensus 236 ~~~~iL~~~~~aL~pg-G~l~i~e~~~~~~ 264 (309)
++++-+.+-|..| -+-.|...=+|-.
T Consensus 284 ---rva~lm~~Wl~~g~cr~aIfnLKlpmk 310 (357)
T PRK11760 284 ---RVAELMAQWLVNGWCREAIFNLKLPMK 310 (357)
T ss_pred ---HHHHHHHHHHhcCcccEEEEEEEcCCC
Confidence 4444455555544 3344444444544
No 220
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.26 E-value=0.01 Score=51.34 Aligned_cols=89 Identities=21% Similarity=0.250 Sum_probs=65.3
Q ss_pred ceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCCCCceEEeCCCCCC-CCC-----CceeeehhhhhcCCh-
Q 021707 162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNS-IPA-----ANAIFMKWVLATWTD- 234 (309)
Q Consensus 162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~-~p~-----~D~i~~~~vlh~~~d- 234 (309)
-++|||||=+...... .++-+. ++-+|+.+. .+ .+...||++. +|. .|+|.++-||-+.|+
T Consensus 53 lrlLEVGals~~N~~s---~~~~fd-vt~IDLns~------~~--~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS---TSGWFD-VTRIDLNSQ------HP--GILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred ceEEeecccCCCCccc---ccCcee-eEEeecCCC------CC--CceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 6999999875543332 355666 899998441 12 3344688874 652 499999999999985
Q ss_pred hHHHHHHHHHHHhcCCCcE-----EEEeccccC
Q 021707 235 DECKLIMENCYKALLAGGK-----LIACEPVLL 262 (309)
Q Consensus 235 ~~~~~iL~~~~~aL~pgG~-----l~i~e~~~~ 262 (309)
.+.-++|+++++.|+|+|. |+|+=+..-
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence 4688999999999999999 888754433
No 221
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.16 E-value=0.0027 Score=56.70 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=61.8
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------------------C------------C
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------------------I------------P 204 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------------------~------------~ 204 (309)
++.+++|||||.-.+ .++...+..+.++..|. +...+..++ . .
T Consensus 56 ~g~~llDiGsGPtiy--~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIY--QLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--G--GGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHH--hhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 467999999998555 33444444444778786 332221110 0 1
Q ss_pred Cc-eEEeCCCCCC--------CCC-CceeeehhhhhcCC--hhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707 205 GV-THIGGDMFNS--------IPA-ANAIFMKWVLATWT--DDECKLIMENCYKALLAGGKLIACEPV 260 (309)
Q Consensus 205 ri-~~~~~d~~~~--------~p~-~D~i~~~~vlh~~~--d~~~~~iL~~~~~aL~pgG~l~i~e~~ 260 (309)
.| .++..|.+++ .|+ +|++++..+|.... .++-.+.++++.+.|||||.|++....
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 24 3666788764 233 69999999997643 457889999999999999999998654
No 222
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=96.10 E-value=0.016 Score=52.91 Aligned_cols=98 Identities=16% Similarity=0.203 Sum_probs=72.0
Q ss_pred cceEEEecCCccHHHHHHHHhc--------------------CCCceEEEeec---hhHHhhCCC---------------
Q 021707 161 VKRLVDVGGSAGDCLRMILQKH--------------------HFICEGINFDL---PEVVGEAPS--------------- 202 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~--------------------p~~~~~~~~D~---p~~~~~a~~--------------- 202 (309)
..+||-||||.|.=..+++..+ |.++ ++.+|. ..|+.....
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~-itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLS-ITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcce-EEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 3699999999988766666655 2256 889997 455554221
Q ss_pred --------CCCceEEeCCCCCC-C---------CCCceeeehhhhhcC---ChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707 203 --------IPGVTHIGGDMFNS-I---------PAANAIFMKWVLATW---TDDECKLIMENCYKALLAGGKLIACEP 259 (309)
Q Consensus 203 --------~~ri~~~~~d~~~~-~---------p~~D~i~~~~vlh~~---~d~~~~~iL~~~~~aL~pgG~l~i~e~ 259 (309)
.-+++|...|+++. . |..++|.+.+.++.+ .-.+.+++|.++-+.++||..|+|+|-
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 02478999999865 1 123888888888753 345678999999999999999999984
No 223
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.04 E-value=0.041 Score=46.80 Aligned_cols=102 Identities=16% Similarity=0.148 Sum_probs=68.0
Q ss_pred CCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCCCCCCceeeehhhhh
Q 021707 157 GFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNSIPAANAIFMKWVLA 230 (309)
Q Consensus 157 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~~p~~D~i~~~~vlh 230 (309)
++-.+.+|||.|.|+|..+++.++... .. ++.-|. |.....++-+ -.|.+...|..-.-|..|+++.+.+++
T Consensus 76 etVrgkrVLd~gagsgLvaIAaa~aGA-~~-v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy 153 (218)
T COG3897 76 ETVRGKRVLDLGAGSGLVAIAAARAGA-AE-VVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFY 153 (218)
T ss_pred cccccceeeecccccChHHHHHHHhhh-HH-HHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceec
Confidence 356688999999999999998887642 22 555555 5554444322 457777778766333459999999987
Q ss_pred cCChhHHHHHHHHHHHhcC-CCcEEEEeccccCC
Q 021707 231 TWTDDECKLIMENCYKALL-AGGKLIACEPVLLD 263 (309)
Q Consensus 231 ~~~d~~~~~iL~~~~~aL~-pgG~l~i~e~~~~~ 263 (309)
+-+.. .+++. ....++ .|-.+++.|+-.+.
T Consensus 154 ~~~~a--~~l~~-~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 154 NHTEA--DRLIP-WKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred CchHH--HHHHH-HHHHHHhCCCEEEEeCCCCCC
Confidence 66544 57777 555565 45566666655444
No 224
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=96.04 E-value=0.011 Score=43.28 Aligned_cols=48 Identities=25% Similarity=0.332 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707 18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG 71 (309)
Q Consensus 18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~ 71 (309)
++.|.+|||+.+ ++++..+++++..|...|+++...+ ..|.|.++...
T Consensus 24 ~~~s~~eiA~~~----~i~~~~l~kil~~L~~~Gli~s~~G--~~GGy~L~~~~ 71 (83)
T PF02082_consen 24 KPVSSKEIAERL----GISPSYLRKILQKLKKAGLIESSRG--RGGGYRLARPP 71 (83)
T ss_dssp C-BEHHHHHHHH----TS-HHHHHHHHHHHHHTTSEEEETS--TTSEEEESS-C
T ss_pred CCCCHHHHHHHH----CcCHHHHHHHHHHHhhCCeeEecCC--CCCceeecCCH
Confidence 469999999999 9999999999999999999987752 14788888633
No 225
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.03 E-value=0.0058 Score=57.41 Aligned_cols=51 Identities=14% Similarity=0.057 Sum_probs=42.4
Q ss_pred ceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCC
Q 021707 162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFN 215 (309)
Q Consensus 162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~ 215 (309)
.+|+|++||+|.++..+++.+. + ++++|. +++++.++++ ++++++.+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~-v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--R-VLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--E-EEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999998863 6 999998 6777777653 579999999865
No 226
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.02 E-value=0.035 Score=56.98 Aligned_cols=110 Identities=13% Similarity=0.022 Sum_probs=71.0
Q ss_pred HHHHHhhcCCC-CCcceEEEecCCccHHHHHHHHhc----C--------------------------------------C
Q 021707 148 MTSVLDSYNGF-KGVKRLVDVGGSAGDCLRMILQKH----H--------------------------------------F 184 (309)
Q Consensus 148 ~~~~~~~~~~~-~~~~~vlDvG~G~G~~~~~l~~~~----p--------------------------------------~ 184 (309)
+..++.... | .....++|-.||+|+++++.+... | .
T Consensus 178 Aaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~ 256 (702)
T PRK11783 178 AAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELP 256 (702)
T ss_pred HHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccC
Confidence 344454443 7 456899999999999999887631 1 2
Q ss_pred CceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC-CC---C-Cceeeehhhhh-cCC-hhHHHHHHHHHHHhcC
Q 021707 185 ICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS-IP---A-ANAIFMKWVLA-TWT-DDECKLIMENCYKALL 249 (309)
Q Consensus 185 ~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~p---~-~D~i~~~~vlh-~~~-d~~~~~iL~~~~~aL~ 249 (309)
.+ ++++|. +.+++.++++ ++|++..+|+.+. .+ + .|+|+++--.- .+. +.+..++-+++-+.++
T Consensus 257 ~~-i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 257 SK-FYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred ce-EEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 35 899998 7777777653 5789999999764 22 1 48888763321 122 2334445444444443
Q ss_pred ---CCcEEEEecc
Q 021707 250 ---AGGKLIACEP 259 (309)
Q Consensus 250 ---pgG~l~i~e~ 259 (309)
||+++++.-.
T Consensus 336 ~~~~g~~~~llt~ 348 (702)
T PRK11783 336 QQFGGWNAALFSS 348 (702)
T ss_pred HhCCCCeEEEEeC
Confidence 8888877643
No 227
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=95.97 E-value=0.0077 Score=39.99 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=35.3
Q ss_pred hhhhhcC-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707 10 RKKVRLA-NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH 56 (309)
Q Consensus 10 ~~~~~l~-~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~ 56 (309)
+++.+.. .++.|+.|||+.+ |++.-.+.|+|..|+..|+++++
T Consensus 8 iL~~l~~~~~~~t~~eia~~~----gl~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 8 ILEALAESGGPLTLSEIARAL----GLPKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHCHHCTBSCEEHHHHHHHH----TS-HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHcCCCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCcCeecC
Confidence 3344433 3568999999999 99999999999999999999986
No 228
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=95.90 E-value=0.018 Score=39.92 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707 16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE 69 (309)
Q Consensus 16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~ 69 (309)
...+.|..|||+.+ |++...+.+.|..|...|++.... .+.|.++|
T Consensus 22 ~~~~~s~~ela~~~----g~s~~tv~r~l~~L~~~g~i~~~~----~~~~~l~~ 67 (67)
T cd00092 22 VQLPLTRQEIADYL----GLTRETVSRTLKELEEEGLISRRG----RGKYRVNP 67 (67)
T ss_pred ccCCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEecC----CCeEEeCC
Confidence 35689999999999 999999999999999999999874 47888764
No 229
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=95.87 E-value=0.019 Score=36.88 Aligned_cols=41 Identities=22% Similarity=0.333 Sum_probs=36.7
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcC
Q 021707 19 PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLT 68 (309)
Q Consensus 19 ~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t 68 (309)
+.|..+||+.+ |++...+.+.|+.|...|+++.. .+.|.++
T Consensus 8 ~~s~~~la~~l----~~s~~tv~~~l~~L~~~g~l~~~-----~~~~~i~ 48 (48)
T smart00419 8 PLTRQEIAELL----GLTRETVSRTLKRLEKEGLISRE-----GGRIVIL 48 (48)
T ss_pred ccCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEEe-----CCEEEEC
Confidence 68999999999 99999999999999999999877 3677654
No 230
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.85 E-value=0.051 Score=47.29 Aligned_cols=96 Identities=18% Similarity=0.247 Sum_probs=69.8
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-h----hHHhhCCCCCCceEEeCCCCCC-----C-CCCceeee
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-P----EVVGEAPSIPGVTHIGGDMFNS-----I-PAANAIFM 225 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p----~~~~~a~~~~ri~~~~~d~~~~-----~-p~~D~i~~ 225 (309)
+..+.+||-+|..+|+...-+..--. +-. +.++++ | ..+..++++++|--+-.|...| + +..|+|+.
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~-VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGV-VYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSE-EEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCc-EEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEe
Confidence 56788999999999999998888654 555 778887 3 5677788889999898999876 1 22488876
Q ss_pred hhhhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707 226 KWVLATWTDDECKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 226 ~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e 258 (309)
--. ..+++.-++.|+..-||+||.++|.=
T Consensus 150 DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 150 DVA----QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp E-S----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCC----ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 543 23456677888889999999888764
No 231
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=95.85 E-value=0.027 Score=50.60 Aligned_cols=100 Identities=15% Similarity=0.129 Sum_probs=74.5
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCC---------CCCceEEeCCCCCCCC----------CC
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPS---------IPGVTHIGGDMFNSIP----------AA 220 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~---------~~ri~~~~~d~~~~~p----------~~ 220 (309)
+...||.+|||-=.....+... ++++ +.=+|+|++++..++ ..++++++.|+.+.+. ..
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~~~-~~~~-~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLPWP-DGTR-VFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred CCcEEEEeCCccccHHHhcCCC-CCCe-EEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 3467999999988888777422 2567 888888988875432 3689999999873321 12
Q ss_pred -ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707 221 -NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL 262 (309)
Q Consensus 221 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~ 262 (309)
-++++-.++.+++++++.++|+.+.+...||+.|+ .|.+.+
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~-~d~~~~ 200 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLA-FDYVRP 200 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEE-EEeccc
Confidence 36777899999999999999999999888887555 555544
No 232
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=95.81 E-value=0.02 Score=52.55 Aligned_cols=98 Identities=19% Similarity=0.252 Sum_probs=63.5
Q ss_pred CCCcceEEEecCCccHHHHHHHHh-------cCCCceEEEeec-hhHHhhCCC--------CCCceEEeCCCCCC--CC-
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQK-------HHFICEGINFDL-PEVVGEAPS--------IPGVTHIGGDMFNS--IP- 218 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~-------~p~~~~~~~~D~-p~~~~~a~~--------~~ri~~~~~d~~~~--~p- 218 (309)
.....+|+|-.||+|.++.++.+. .+..+ +.++|. +.++..++- .....+..+|.+.. ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~-i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEIN-IYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEE-EEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccce-eEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence 455678999999999999998874 46777 999998 444433321 13456888998865 32
Q ss_pred --CCceeeeh--hhhhcCC------------------hhHHHHHHHHHHHhcCCCcEEEEe
Q 021707 219 --AANAIFMK--WVLATWT------------------DDECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 219 --~~D~i~~~--~vlh~~~------------------d~~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
..|+|+++ +....|. ..+ ...+..+.+.|++||++.++
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAE-YAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHH-HHHHHHHHHTEEEEEEEEEE
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchh-hhhHHHHHhhcccccceeEE
Confidence 24998865 2222111 122 24778899999999986544
No 233
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=95.80 E-value=0.012 Score=40.97 Aligned_cols=52 Identities=21% Similarity=0.453 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc--ccCceEEcChhc
Q 021707 16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF--RGERKYSLTEIG 71 (309)
Q Consensus 16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~~t~~~ 71 (309)
.+++.|..+|++.+ +++...+.+.++.|...|+|++.... .....|++|+.|
T Consensus 15 ~~~~~t~~~l~~~~----~~~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G 68 (68)
T PF13463_consen 15 SDGPMTQSDLAERL----GISKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG 68 (68)
T ss_dssp -TS-BEHHHHHHHT----T--HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred cCCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence 47899999999999 99999999999999999999776532 112368998864
No 234
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=95.78 E-value=0.014 Score=42.21 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707 16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT 76 (309)
Q Consensus 16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~ 76 (309)
.+++.+..+|+..+ +++...+.+.|..|...|+++.. ++.|.+|+.|..++.
T Consensus 16 ~~~~~~~t~i~~~~----~L~~~~~~~yL~~L~~~gLI~~~-----~~~Y~lTekG~~~l~ 67 (77)
T PF14947_consen 16 SKGGAKKTEIMYKA----NLNYSTLKKYLKELEEKGLIKKK-----DGKYRLTEKGKEFLE 67 (77)
T ss_dssp -TT-B-HHHHHTTS----T--HHHHHHHHHHHHHTTSEEEE-----TTEEEE-HHHHHHHH
T ss_pred HcCCCCHHHHHHHh----CcCHHHHHHHHHHHHHCcCeeCC-----CCEEEECccHHHHHH
Confidence 47999999999999 99999999999999999999764 689999999976654
No 235
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.78 E-value=0.12 Score=44.34 Aligned_cols=113 Identities=13% Similarity=0.158 Sum_probs=83.0
Q ss_pred HHHHhhcC--CCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-----hhHHhhCCCCCCceEEeCCCCCCC----
Q 021707 149 TSVLDSYN--GFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-----PEVVGEAPSIPGVTHIGGDMFNSI---- 217 (309)
Q Consensus 149 ~~~~~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-----p~~~~~a~~~~ri~~~~~d~~~~~---- 217 (309)
..++..++ ....+.+||-+|..+|+....+..-.++-. +.++++ .+.+..+++++|+--+-+|...|+
T Consensus 63 AaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~-iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~ 141 (231)
T COG1889 63 AAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGR-IYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRH 141 (231)
T ss_pred HHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCc-EEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhh
Confidence 34555554 267789999999999999999998888666 778887 356777888899999999998762
Q ss_pred --CCCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCCC
Q 021707 218 --PAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSN 266 (309)
Q Consensus 218 --p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~~ 266 (309)
+..|+|+.--. .++++.-+..|+..-|++||.++|.=-...-+.+
T Consensus 142 ~Ve~VDviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT 188 (231)
T COG1889 142 LVEKVDVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVT 188 (231)
T ss_pred hcccccEEEEecC----CchHHHHHHHHHHHhcccCCeEEEEEEeeccccc
Confidence 22488875433 3456667778889999999977766544444443
No 236
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.75 E-value=0.0073 Score=51.34 Aligned_cols=98 Identities=17% Similarity=0.088 Sum_probs=63.1
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCC------CC-Cceee
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSI------PA-ANAIF 224 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~------p~-~D~i~ 224 (309)
.+.+|||+=||+|.++.+.+.+. +++++.+|. +..+...+++ ++++++.+|.+..+ .. .|+|+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 35799999999999999999885 333899998 5555555442 57899999976532 22 49998
Q ss_pred ehhhhhcCChhHHHHHHHHHH--HhcCCCcEEEEeccccC
Q 021707 225 MKWVLATWTDDECKLIMENCY--KALLAGGKLIACEPVLL 262 (309)
Q Consensus 225 ~~~vlh~~~d~~~~~iL~~~~--~aL~pgG~l~i~e~~~~ 262 (309)
+---.. .... ..++|..+. ..|+++| ++|+|....
T Consensus 120 lDPPY~-~~~~-~~~~l~~l~~~~~l~~~~-~ii~E~~~~ 156 (183)
T PF03602_consen 120 LDPPYA-KGLY-YEELLELLAENNLLNEDG-LIIIEHSKK 156 (183)
T ss_dssp E--STT-SCHH-HHHHHHHHHHTTSEEEEE-EEEEEEETT
T ss_pred ECCCcc-cchH-HHHHHHHHHHCCCCCCCE-EEEEEecCC
Confidence 753222 1211 356777776 6677777 566666544
No 237
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.73 E-value=0.051 Score=46.23 Aligned_cols=105 Identities=15% Similarity=0.127 Sum_probs=68.2
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec--hhHH-----------hhCCC--CCCceEEeCCCCCC-CCCC-
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL--PEVV-----------GEAPS--IPGVTHIGGDMFNS-IPAA- 220 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~--p~~~-----------~~a~~--~~ri~~~~~d~~~~-~p~~- 220 (309)
+....+|+|+=.|.|.+..-+...- ..+ +.+.-. .+.. ..+++ ..+++.+..+.... .|+.
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~v-gp~-G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~ 123 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAV-GPK-GKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKL 123 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhc-CCc-eeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcc
Confidence 5677899999999999998777543 333 433332 1221 11111 14555555555443 3333
Q ss_pred ceeeehhhhhc-----CChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 221 NAIFMKWVLAT-----WTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 221 D~i~~~~vlh~-----~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
|+++....-|+ +....+.++-+.++++|||||.+++.|......
T Consensus 124 d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG 172 (238)
T COG4798 124 DLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPG 172 (238)
T ss_pred cccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCC
Confidence 77776544443 335567899999999999999999999887663
No 238
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=95.70 E-value=0.0085 Score=56.50 Aligned_cols=51 Identities=12% Similarity=0.055 Sum_probs=42.0
Q ss_pred ceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCC
Q 021707 162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFN 215 (309)
Q Consensus 162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~ 215 (309)
.+|||++||+|.++..+++.+. + ++++|. +.+++.++++ ++++++.+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~-v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--R-VLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--E-EEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 4799999999999999998764 5 999998 6677766643 589999999865
No 239
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.66 E-value=0.066 Score=45.27 Aligned_cols=99 Identities=17% Similarity=0.293 Sum_probs=58.6
Q ss_pred hhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeechhHHhhCCCCCCceEEeC-CCCCC---------CCC--
Q 021707 153 DSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDLPEVVGEAPSIPGVTHIGG-DMFNS---------IPA-- 219 (309)
Q Consensus 153 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~p~~~~~a~~~~ri~~~~~-d~~~~---------~p~-- 219 (309)
+.+.-+.+..+|+|+||..|.++.-..++. |+-. +.++|+-++.. -..++++.+ |+.++ +|.
T Consensus 62 dKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~-v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 62 DKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGM-VLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred hhccccCCCCEEEEccCCCChHHHHHHHhhCCCce-EEEEeeeeccC----CCCcccccccccCCHHHHHHHHHhCCCCc
Confidence 344324567899999999999999888776 9888 99999844321 134555555 44332 343
Q ss_pred Cceeeehhhh---------hcCChhHHHHHHHHHHHhcCCCcEEEE
Q 021707 220 ANAIFMKWVL---------ATWTDDECKLIMENCYKALLAGGKLIA 256 (309)
Q Consensus 220 ~D~i~~~~vl---------h~~~d~~~~~iL~~~~~aL~pgG~l~i 256 (309)
.|+|+.-..- |+-.-+-|..+|.-...-+.|+|.++.
T Consensus 137 VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvc 182 (232)
T KOG4589|consen 137 VDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVC 182 (232)
T ss_pred ccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEE
Confidence 3666532110 111122344445444555678886654
No 240
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=95.66 E-value=0.012 Score=40.32 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=42.3
Q ss_pred hhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 5 ECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 5 ~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
..+..+++.+..++|.|+.|||+.+ |+++..+.+-|+.|...|+|+...
T Consensus 10 p~R~~Il~~L~~~~~~t~~ela~~l----~~~~~t~s~hL~~L~~aGli~~~~ 58 (61)
T PF12840_consen 10 PTRLRILRLLASNGPMTVSELAEEL----GISQSTVSYHLKKLEEAGLIEVER 58 (61)
T ss_dssp HHHHHHHHHHHHCSTBEHHHHHHHH----TS-HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCeEEec
Confidence 3456677766578999999999999 999999999999999999999875
No 241
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.66 E-value=0.033 Score=55.12 Aligned_cols=66 Identities=11% Similarity=0.148 Sum_probs=44.3
Q ss_pred CcceEEEecCCccHHHHHHHHhcCC--------CceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC--------
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHF--------ICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-------- 216 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~--------~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-------- 216 (309)
...+|+|.|||+|.++.+++++.+. .. ++++|. +..+..++.. ..+.+..+|+...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~-i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELN-IYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceee-eeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccc
Confidence 4568999999999999999988753 34 788888 4455544321 2455666665432
Q ss_pred CCCCceeeeh
Q 021707 217 IPAANAIFMK 226 (309)
Q Consensus 217 ~p~~D~i~~~ 226 (309)
.+..|+|+.+
T Consensus 110 ~~~fD~IIgN 119 (524)
T TIGR02987 110 LDLFDIVITN 119 (524)
T ss_pred cCcccEEEeC
Confidence 1224998865
No 242
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.65 E-value=0.007 Score=49.44 Aligned_cols=55 Identities=29% Similarity=0.380 Sum_probs=43.0
Q ss_pred CceEEeCCCCCC-CC-C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707 205 GVTHIGGDMFNS-IP-A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP 259 (309)
Q Consensus 205 ri~~~~~d~~~~-~p-~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~ 259 (309)
.+.+++.-.++. +. + +|+|+..|++.|++-++-...++.+++.|+|||+|-|.=+
T Consensus 30 ~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 30 EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 345555433332 33 3 4999999999999999999999999999999999988644
No 243
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=95.61 E-value=0.027 Score=47.67 Aligned_cols=103 Identities=16% Similarity=0.099 Sum_probs=63.2
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCc--------eEEEeec-hhHHhhCCCC-------CCceEEeCC
Q 021707 149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFIC--------EGINFDL-PEVVGEAPSI-------PGVTHIGGD 212 (309)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~--------~~~~~D~-p~~~~~a~~~-------~ri~~~~~d 212 (309)
..++.... |.+...|+|-=||+|.++++.+...++.. .+++.|. +.+++.++++ ..|.+...|
T Consensus 18 ~~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D 96 (179)
T PF01170_consen 18 AALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWD 96 (179)
T ss_dssp HHHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--
T ss_pred HHHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecc
Confidence 33455554 77788999999999999998877665533 2789998 6677666542 568999999
Q ss_pred CCCC-CCC--Cceeeehhhhhc-CCh-h----HHHHHHHHHHHhcCCCc
Q 021707 213 MFNS-IPA--ANAIFMKWVLAT-WTD-D----ECKLIMENCYKALLAGG 252 (309)
Q Consensus 213 ~~~~-~p~--~D~i~~~~vlh~-~~d-~----~~~~iL~~~~~aL~pgG 252 (309)
+.+. .+. .|.|++.--.-. ... . --.++++++.+.++|..
T Consensus 97 ~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~ 145 (179)
T PF01170_consen 97 ARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRA 145 (179)
T ss_dssp GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCE
T ss_pred hhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCE
Confidence 9875 233 388887543321 111 1 23456788888888833
No 244
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=95.58 E-value=0.023 Score=50.87 Aligned_cols=54 Identities=13% Similarity=0.140 Sum_probs=45.4
Q ss_pred hhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhch
Q 021707 12 KVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGK 72 (309)
Q Consensus 12 ~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~ 72 (309)
+.+-..++.|+.|||+.+ |++.-.+.|+|..|+..|++.++. .+++|++.+...
T Consensus 21 ~~l~~~~~l~l~eia~~l----gl~kstv~Rll~tL~~~G~l~~~~---~~~~Y~lG~~~~ 74 (257)
T PRK15090 21 QALGEEREIGITELSQRV----MMSKSTVYRFLQTMKTLGYVAQEG---ESEKYSLTLKLF 74 (257)
T ss_pred HHhhcCCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEcC---CCCcEEecHHHH
Confidence 333345689999999999 999999999999999999999874 257899998553
No 245
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=95.54 E-value=0.026 Score=44.65 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=39.3
Q ss_pred hhhhhc-CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 10 RKKVRL-ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 10 ~~~~~l-~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
++..++ .++|.|+++||+.+ +.+.-.+.|-|.-|...|++.+..
T Consensus 32 v~~~LL~~~~~~tvdelae~l----nr~rStv~rsl~~L~~~GlV~Rek 76 (126)
T COG3355 32 VYKALLEENGPLTVDELAEIL----NRSRSTVYRSLQNLLEAGLVEREK 76 (126)
T ss_pred HHHHHHhhcCCcCHHHHHHHH----CccHHHHHHHHHHHHHcCCeeeee
Confidence 344466 68999999999999 999999999999999999999876
No 246
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.067 Score=47.18 Aligned_cols=122 Identities=18% Similarity=0.275 Sum_probs=84.3
Q ss_pred CcceEEEecCCccHHHHHHHHhcCC----CceEEEeech-hHHh-----hCCCCCCceE--EeCCCCCC---CCC-C--c
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHF----ICEGINFDLP-EVVG-----EAPSIPGVTH--IGGDMFNS---IPA-A--N 221 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~----~~~~~~~D~p-~~~~-----~a~~~~ri~~--~~~d~~~~---~p~-~--D 221 (309)
+..+++|+|+|+-.=+..|+..+.+ ++ .+-+|.. .++. ..++.+.+++ +++|+... .|. + =
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~r-yvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLR-YVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcce-eeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 3678999999999988888887766 56 8899983 2332 2234455544 45787544 444 2 4
Q ss_pred eeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEec-cccCCCCC----chhhhhhhhcccHhhhc
Q 021707 222 AIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACE-PVLLDDSN----ESQRTRALLEGDIFVMT 283 (309)
Q Consensus 222 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e-~~~~~~~~----~~~~~~~~~~~dl~ml~ 283 (309)
++++...|-++++++|..+|.+++.+|.||-.+++.- ...+...- .++. .....|.+|||.
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~Ae~Le~AYdDp~-gVTa~FnlNvLa 222 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKPAERLEAAYDDPQ-GVTAEFNLNVLA 222 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCHHHHHHHhhcCcc-chHHHHHHHHHH
Confidence 5778899999999999999999999999998777653 33222110 1111 234578888887
No 247
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.47 E-value=0.04 Score=49.73 Aligned_cols=95 Identities=17% Similarity=0.241 Sum_probs=54.6
Q ss_pred cceEEEecCCccHH-HHHHHHhc-CCCceEEEeec-hhHHhhCCC--------CCCceEEeCCCCCC---CCCCceeeeh
Q 021707 161 VKRLVDVGGSAGDC-LRMILQKH-HFICEGINFDL-PEVVGEAPS--------IPGVTHIGGDMFNS---IPAANAIFMK 226 (309)
Q Consensus 161 ~~~vlDvG~G~G~~-~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~--------~~ri~~~~~d~~~~---~p~~D~i~~~ 226 (309)
+.+|+=||||.=-+ ++.+++++ ++.. ++++|. |..++.+++ ..+++|+++|..+. +...|+|++.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~-v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGAR-VHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--E-EEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 46999999996554 44555544 6777 899998 555555543 37899999998653 3335888876
Q ss_pred hhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707 227 WVLATWTDDECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 227 ~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
-..-. +.++=.++|.++.+.|+||.++++-
T Consensus 200 alVg~-~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVGM-DAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhccc-ccchHHHHHHHHHhhCCCCcEEEEe
Confidence 55421 2222369999999999999988876
No 248
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=95.46 E-value=0.026 Score=44.26 Aligned_cols=61 Identities=20% Similarity=0.234 Sum_probs=49.9
Q ss_pred hhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChh
Q 021707 5 ECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEI 70 (309)
Q Consensus 5 ~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~ 70 (309)
..++.++.++...++.++.||++.+ ++++..+.+-|+.|...|+|....+++ .-.|++++.
T Consensus 16 ptRl~IL~~L~~~~~~~v~ela~~l----~lsqstvS~HL~~L~~AGLV~~~r~Gr-~~~Y~l~~~ 76 (117)
T PRK10141 16 ETRLGIVLLLRESGELCVCDLCTAL----DQSQPKISRHLALLRESGLLLDRKQGK-WVHYRLSPH 76 (117)
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCceEEEEEcC-EEEEEECch
Confidence 4567788877667899999999999 999999999999999999998876321 235888763
No 249
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=95.41 E-value=0.023 Score=36.84 Aligned_cols=45 Identities=22% Similarity=0.284 Sum_probs=38.0
Q ss_pred hhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceee
Q 021707 6 CRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSE 55 (309)
Q Consensus 6 ~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~ 55 (309)
.++-++.++ .++|.++.||++.+ |+++..+.+-|+.|...|+|+.
T Consensus 3 ~R~~Il~~L-~~~~~~~~el~~~l----~~s~~~vs~hL~~L~~~glV~~ 47 (47)
T PF01022_consen 3 TRLRILKLL-SEGPLTVSELAEEL----GLSQSTVSHHLKKLREAGLVEK 47 (47)
T ss_dssp HHHHHHHHH-TTSSEEHHHHHHHH----TS-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHH-HhCCCchhhHHHhc----cccchHHHHHHHHHHHCcCeeC
Confidence 455566655 45999999999999 9999999999999999999863
No 250
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.41 E-value=0.026 Score=54.53 Aligned_cols=97 Identities=13% Similarity=0.229 Sum_probs=66.9
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-h----hHHhhCCCCCCceEEeCCCCCC---CCCC-ceeeehhh
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-P----EVVGEAPSIPGVTHIGGDMFNS---IPAA-NAIFMKWV 228 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p----~~~~~a~~~~ri~~~~~d~~~~---~p~~-D~i~~~~v 228 (309)
+.....|+|..+|.|.|+.+|.+. . +.++.. | ..+..+-.+. .--+-+|+-+. +|.. |++...++
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~----~-VWVMNVVP~~~~ntL~vIydRG-LIG~yhDWCE~fsTYPRTYDLlHA~~l 436 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD----P-VWVMNVVPVSGPNTLPVIYDRG-LIGVYHDWCEAFSTYPRTYDLLHADGL 436 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC----C-ceEEEecccCCCCcchhhhhcc-cchhccchhhccCCCCcchhheehhhh
Confidence 445678999999999999999754 2 555554 2 2222111111 11122455454 6666 99999999
Q ss_pred hhcCChh-HHHHHHHHHHHhcCCCcEEEEeccc
Q 021707 229 LATWTDD-ECKLIMENCYKALLAGGKLIACEPV 260 (309)
Q Consensus 229 lh~~~d~-~~~~iL~~~~~aL~pgG~l~i~e~~ 260 (309)
+..+.+. +...+|-++-|.|+|+|.++|-|.+
T Consensus 437 fs~~~~rC~~~~illEmDRILRP~G~~iiRD~~ 469 (506)
T PF03141_consen 437 FSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV 469 (506)
T ss_pred hhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence 8776543 5678999999999999999998765
No 251
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=95.31 E-value=0.042 Score=44.52 Aligned_cols=58 Identities=16% Similarity=0.074 Sum_probs=48.7
Q ss_pred hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhh
Q 021707 10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLV 75 (309)
Q Consensus 10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~ 75 (309)
+..+.-.+++.++.+||+.+ ++++..+.+.++.|...|+|.... .+.|++|+.|..+.
T Consensus 13 I~~l~~~~~~~~~~ela~~l----~vs~~svs~~l~~L~~~Gli~~~~----~~~i~LT~~G~~~a 70 (142)
T PRK03902 13 IYLLIEEKGYARVSDIAEAL----SVHPSSVTKMVQKLDKDEYLIYEK----YRGLVLTPKGKKIG 70 (142)
T ss_pred HHHHHhcCCCcCHHHHHHHh----CCChhHHHHHHHHHHHCCCEEEec----CceEEECHHHHHHH
Confidence 34444457899999999999 999999999999999999998664 56799999986554
No 252
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.21 E-value=0.047 Score=51.68 Aligned_cols=91 Identities=13% Similarity=0.083 Sum_probs=68.9
Q ss_pred ceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCC----CCCceeeehhhhh
Q 021707 162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSI----PAANAIFMKWVLA 230 (309)
Q Consensus 162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~----p~~D~i~~~~vlh 230 (309)
.+|||.-||+|..+++.+.+.++.+.++..|. |..++.++++ .++++..+|....+ ...|+|.+-- .
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 58999999999999999998766544999998 6677666543 45788888887542 2259888733 2
Q ss_pred cCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707 231 TWTDDECKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 231 ~~~d~~~~~iL~~~~~aL~pgG~l~i~e 258 (309)
... ...|..+.+.++++|.|.+.-
T Consensus 124 --Gs~--~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 --GTP--APFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred --CCc--HHHHHHHHHhcccCCEEEEEe
Confidence 211 368888999999999999984
No 253
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=95.19 E-value=0.029 Score=36.38 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=36.0
Q ss_pred hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCcee
Q 021707 8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFS 54 (309)
Q Consensus 8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~ 54 (309)
.-++..+..++++|..|||+.+ |++...+.+.++-|...|+++
T Consensus 6 ~~Il~~l~~~~~~t~~ela~~~----~is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 6 RKILNYLRENPRITQKELAEKL----GISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHCTTS-HHHHHHHH----TS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHh----CCCHHHHHHHHHHHHHCcCcC
Confidence 3456666678889999999999 999999999999999999985
No 254
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.19 E-value=0.13 Score=44.86 Aligned_cols=99 Identities=17% Similarity=0.182 Sum_probs=72.1
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeech--------hHHhhCCCCCCceEEeCCCCCCC----C----CC-ce
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP--------EVVGEAPSIPGVTHIGGDMFNSI----P----AA-NA 222 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p--------~~~~~a~~~~ri~~~~~d~~~~~----p----~~-D~ 222 (309)
++.+++|||.=+|.-+.+++.+-|+--+++.+|.+ .+.+.+.-...|+++.|+..+.+ + .+ |.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 46899999999999999999999874348999983 33333444589999999887652 2 12 77
Q ss_pred eeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 223 IFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 223 i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
+|+=+ ..........++-+-+++||.|++-...++.
T Consensus 153 aFvDa-----dK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 153 AFVDA-----DKDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred EEEcc-----chHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 76532 3334557788888899999977777666665
No 255
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.19 E-value=0.085 Score=45.61 Aligned_cols=100 Identities=14% Similarity=0.104 Sum_probs=72.5
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCC-----CCCceEEeCCCCC---CCCC--Cceeeehh
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPS-----IPGVTHIGGDMFN---SIPA--ANAIFMKW 227 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~-----~~ri~~~~~d~~~---~~p~--~D~i~~~~ 227 (309)
..++.+||.||=|-|.....+.++.|..+ .++---|.|..+.++ +.+|....|-+.+ .+|. .|-|+.-.
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H-~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPDEH-WIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDT 177 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCcce-EEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeec
Confidence 46779999999999999999999988888 555555999998875 3778888775533 2444 36665432
Q ss_pred hhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707 228 VLATWTDDECKLIMENCYKALLAGGKLIACEPV 260 (309)
Q Consensus 228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~ 260 (309)
.-.. -++....-+.+.+-|||+|.+-.+...
T Consensus 178 y~e~--yEdl~~~hqh~~rLLkP~gv~SyfNg~ 208 (271)
T KOG1709|consen 178 YSEL--YEDLRHFHQHVVRLLKPEGVFSYFNGL 208 (271)
T ss_pred hhhH--HHHHHHHHHHHhhhcCCCceEEEecCc
Confidence 2111 145677888999999999988766544
No 256
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=95.17 E-value=0.045 Score=40.78 Aligned_cols=67 Identities=24% Similarity=0.265 Sum_probs=51.8
Q ss_pred hhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707 6 CRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT 76 (309)
Q Consensus 6 ~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~ 76 (309)
.+.-++..+...++.|..+||+.+ ++++..+.+.++-|+..|+|..... +.....|.+|+.+..+..
T Consensus 11 ~~~~il~~l~~~~~~~~~~la~~~----~~s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~~ 79 (101)
T smart00347 11 TQFLVLRILYEEGPLSVSELAKRL----GVSPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELIE 79 (101)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHH----CCCchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHHH
Confidence 445566666667889999999999 9999999999999999999987642 111236888888766554
No 257
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.15 E-value=0.14 Score=44.43 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=66.6
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeec-h----hHHhhCCC---CCCceEEeCCCCCCC-CC--Cceeeehhhh
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-P----EVVGEAPS---IPGVTHIGGDMFNSI-PA--ANAIFMKWVL 229 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p----~~~~~a~~---~~ri~~~~~d~~~~~-p~--~D~i~~~~vl 229 (309)
..++.||||-++.+...+.+.+|..+ ++..|. + .++...++ .++|+...+|-+..+ ++ .|+++....
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~-~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM- 94 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPAST-AVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM- 94 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcce-EEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC-
Confidence 34599999999999999999999999 999997 3 33333333 389999999998773 33 376653221
Q ss_pred hcCChhHHHHHHHH---------------------HHHhcCCCcEEEEeccccCCCC
Q 021707 230 ATWTDDECKLIMEN---------------------CYKALLAGGKLIACEPVLLDDS 265 (309)
Q Consensus 230 h~~~d~~~~~iL~~---------------------~~~aL~pgG~l~i~e~~~~~~~ 265 (309)
...-..+||.+ +++-|..+++-++.|..+.+++
T Consensus 95 ---GG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E~ileE~~ 148 (226)
T COG2384 95 ---GGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAETILEEDG 148 (226)
T ss_pred ---cHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeeeeeecccC
Confidence 11222233333 3444445677777777777764
No 258
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=95.13 E-value=0.039 Score=47.58 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=51.6
Q ss_pred hhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc----cccCceEEcChhchhhhc
Q 021707 7 RDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE----FRGERKYSLTEIGKSLVT 76 (309)
Q Consensus 7 ~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~----~~~~~~y~~t~~~~~l~~ 76 (309)
+..++..+...++.|..|||+.+ |+++..+.+.|+.|...|+|+.... ++..-.|.+|+.+..+..
T Consensus 3 r~~IL~~L~~~~~~t~~eLA~~l----gis~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~~ 72 (203)
T TIGR02702 3 KEDILSYLLKQGQATAAALAEAL----AISPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQFP 72 (203)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhcc
Confidence 34566666677899999999999 9999999999999999999987621 111224899988876554
No 259
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.04 E-value=0.15 Score=44.79 Aligned_cols=101 Identities=20% Similarity=0.240 Sum_probs=66.7
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec--hhHHhhCCCCCCceEEeC-CCCCCCC----C-C
Q 021707 149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL--PEVVGEAPSIPGVTHIGG-DMFNSIP----A-A 220 (309)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~--p~~~~~a~~~~ri~~~~~-d~~~~~p----~-~ 220 (309)
...++.|+-..++..+||||++||.|+..++++. ++.+.++|. -+.....+..+||..++. |+....| + .
T Consensus 68 ~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 68 EKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred HHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCC
Confidence 3456666523457899999999999999999884 323888887 455555666788877764 4443222 2 2
Q ss_pred ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEE
Q 021707 221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIA 256 (309)
Q Consensus 221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i 256 (309)
|++++--.+ --...+|-.+...++|++.++.
T Consensus 146 d~~v~DvSF-----ISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 146 DLIVIDVSF-----ISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred CeEEEEeeh-----hhHHHHHHHHHHhcCCCceEEE
Confidence 666642221 1235788888889998876654
No 260
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=95.00 E-value=0.013 Score=50.29 Aligned_cols=94 Identities=13% Similarity=0.126 Sum_probs=59.4
Q ss_pred CC-CcceEEEecCCccHHHHHHHHhcCCCceEEEeech-hHHhhCCCCCCceEEe-CCCCCCCCCCceeeehhhhhcCCh
Q 021707 158 FK-GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP-EVVGEAPSIPGVTHIG-GDMFNSIPAANAIFMKWVLATWTD 234 (309)
Q Consensus 158 ~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p-~~~~~a~~~~ri~~~~-~d~~~~~p~~D~i~~~~vlh~~~d 234 (309)
|. .+.++||+|+|.|..+..++..+.+ +..-+++ .|..+.++. +..+.. .+..+---+.|+|.+.+.|.-..+
T Consensus 109 w~~~~~~lLDlGAGdGeit~~m~p~fee---vyATElS~tMr~rL~kk-~ynVl~~~ew~~t~~k~dli~clNlLDRc~~ 184 (288)
T KOG3987|consen 109 WGQEPVTLLDLGAGDGEITLRMAPTFEE---VYATELSWTMRDRLKKK-NYNVLTEIEWLQTDVKLDLILCLNLLDRCFD 184 (288)
T ss_pred cCCCCeeEEeccCCCcchhhhhcchHHH---HHHHHhhHHHHHHHhhc-CCceeeehhhhhcCceeehHHHHHHHHhhcC
Confidence 53 3679999999999999888866544 3333442 344444332 222221 122111111399999999965554
Q ss_pred hHHHHHHHHHHHhcCC-CcEEEEe
Q 021707 235 DECKLIMENCYKALLA-GGKLIAC 257 (309)
Q Consensus 235 ~~~~~iL~~~~~aL~p-gG~l~i~ 257 (309)
+ -++|+.++.+|+| +|++++.
T Consensus 185 p--~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 185 P--FKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred h--HHHHHHHHHHhccCCCcEEEE
Confidence 4 5899999999999 7877654
No 261
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.96 E-value=0.16 Score=48.05 Aligned_cols=103 Identities=16% Similarity=0.168 Sum_probs=65.3
Q ss_pred CcceEEEecCCccHHHHHH--------HHh-------cCCCceEEEeechh-----HHhhCCC---------------CC
Q 021707 160 GVKRLVDVGGSAGDCLRMI--------LQK-------HHFICEGINFDLPE-----VVGEAPS---------------IP 204 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l--------~~~-------~p~~~~~~~~D~p~-----~~~~a~~---------------~~ 204 (309)
+..+|+|+|||+|..+..+ .++ -|+.+ +..-|+|. +...... ..
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~q-v~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~ 141 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFS-AFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGH 141 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcce-EEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCC
Confidence 4568999999999765433 232 24677 88888851 2221110 11
Q ss_pred C---ceEEeCCCCCC-CCCC--ceeeehhhhhcCCh------------------------------------hHHHHHHH
Q 021707 205 G---VTHIGGDMFNS-IPAA--NAIFMKWVLATWTD------------------------------------DECKLIME 242 (309)
Q Consensus 205 r---i~~~~~d~~~~-~p~~--D~i~~~~vlh~~~d------------------------------------~~~~~iL~ 242 (309)
+ +.-++|.|+.. +|.. ++++.++.||-++. .|-..+|+
T Consensus 142 ~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~ 221 (386)
T PLN02668 142 RSYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLR 221 (386)
T ss_pred CceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 34455888876 7873 99999999985431 01234555
Q ss_pred HHHHhcCCCcEEEEeccccCC
Q 021707 243 NCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 243 ~~~~aL~pgG~l~i~e~~~~~ 263 (309)
.=++-|.|||++++.=.-.+.
T Consensus 222 ~Ra~ELvpGG~mvl~~~Gr~~ 242 (386)
T PLN02668 222 ARAQEMKRGGAMFLVCLGRTS 242 (386)
T ss_pred HHHHHhccCcEEEEEEecCCC
Confidence 557789999999988666653
No 262
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=94.89 E-value=0.028 Score=52.82 Aligned_cols=100 Identities=17% Similarity=0.114 Sum_probs=74.0
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC-CCC--Cceeeehhhh
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS-IPA--ANAIFMKWVL 229 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~-~p~--~D~i~~~~vl 229 (309)
..+++|+|||.|.....+... ...+ .+++|. +.-+.++.. ..+..++.+|+.+. +++ +|.+.+..+.
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f-~~~~-~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVF-KKAG-VVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred cccccccCcCcCchhHHHHHh-ccCC-ccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 347999999999998877654 3556 788887 222222221 14445588888876 554 4999988888
Q ss_pred hcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 230 ATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 230 h~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
.+.++. ..++++++++++|||.++..|.+....
T Consensus 189 ~~~~~~--~~~y~Ei~rv~kpGG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 189 CHAPDL--EKVYAEIYRVLKPGGLFIVKEWIKTAK 221 (364)
T ss_pred ccCCcH--HHHHHHHhcccCCCceEEeHHHHHhhh
Confidence 888877 489999999999999999999876554
No 263
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=94.86 E-value=0.011 Score=45.11 Aligned_cols=91 Identities=16% Similarity=0.136 Sum_probs=39.6
Q ss_pred EEecCCccHHHHHHHHhcCCCc--eEEEeechh----HHhhCCC---CCCceEEeCCCCCC---CC-C-Cceeeehhhhh
Q 021707 165 VDVGGSAGDCLRMILQKHHFIC--EGINFDLPE----VVGEAPS---IPGVTHIGGDMFNS---IP-A-ANAIFMKWVLA 230 (309)
Q Consensus 165 lDvG~G~G~~~~~l~~~~p~~~--~~~~~D~p~----~~~~a~~---~~ri~~~~~d~~~~---~p-~-~D~i~~~~vlh 230 (309)
|+||+..|..+..+++..+... +++++|... .-+..++ .++++++.+|..+. ++ . .|++++=- -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 6899999999998888776542 289999833 3333332 37899999998654 22 2 37777532 12
Q ss_pred cCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707 231 TWTDDECKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 231 ~~~d~~~~~iL~~~~~aL~pgG~l~i~e 258 (309)
..+.+.+-++.+.+.|+|||.+++.|
T Consensus 80 --~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 --SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred --CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 22456788999999999999888765
No 264
>PHA00738 putative HTH transcription regulator
Probab=94.81 E-value=0.052 Score=41.54 Aligned_cols=62 Identities=19% Similarity=0.041 Sum_probs=50.4
Q ss_pred hhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707 5 ECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG 71 (309)
Q Consensus 5 ~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~ 71 (309)
..+..+++++..++++++.+|++.+ +++...+.+-|+.|...|+|.....++ .-.|++++..
T Consensus 12 ptRr~IL~lL~~~e~~~V~eLae~l----~lSQptVS~HLKvLreAGLV~srK~Gr-~vyY~Ln~~~ 73 (108)
T PHA00738 12 ILRRKILELIAENYILSASLISHTL----LLSYTTVLRHLKILNEQGYIELYKEGR-TLYAKIRENS 73 (108)
T ss_pred HHHHHHHHHHHHcCCccHHHHHHhh----CCCHHHHHHHHHHHHHCCceEEEEECC-EEEEEECCCc
Confidence 3567788877666689999999999 999999999999999999999887331 2457777633
No 265
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.81 E-value=0.089 Score=42.77 Aligned_cols=108 Identities=15% Similarity=0.136 Sum_probs=72.9
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC-CCC
Q 021707 149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS-IPA 219 (309)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~-~p~ 219 (309)
+.+++-+. -.+..+.+|+|+|.|....+.++.. -.. .+++++ |..++..+- ..+..|..-|+++. +..
T Consensus 62 ~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~-a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d 138 (199)
T KOG4058|consen 62 ENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRP-AVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD 138 (199)
T ss_pred HHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCc-CCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc
Confidence 44555554 3445799999999999999888876 455 899998 777766542 26788888888874 544
Q ss_pred CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
...++++.+= .-...+--+++.-|+.|.+++.+-+-+|+-
T Consensus 139 y~~vviFgae-----s~m~dLe~KL~~E~p~nt~vvacRFPLP~w 178 (199)
T KOG4058|consen 139 YRNVVIFGAE-----SVMPDLEDKLRTELPANTRVVACRFPLPTW 178 (199)
T ss_pred cceEEEeehH-----HHHhhhHHHHHhhCcCCCeEEEEecCCCcc
Confidence 4222222211 112233445666788899999999888883
No 266
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=94.81 E-value=0.042 Score=48.95 Aligned_cols=55 Identities=20% Similarity=0.367 Sum_probs=49.9
Q ss_pred hcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcC
Q 021707 14 RLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTD 77 (309)
Q Consensus 14 ~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~ 77 (309)
+|.+||.|.+||-..+ ++++..+..=++-|...|+|.++ ++.|++|++|..++..
T Consensus 21 lL~egPkti~EI~~~l----~vs~~ai~pqiKkL~~~~LV~~~-----~~~Y~LS~~G~iiv~k 75 (260)
T COG4742 21 LLKEGPKTIEEIKNEL----NVSSSAILPQIKKLKDKGLVVQE-----GDRYSLSSLGKIIVEK 75 (260)
T ss_pred HHHhCCCCHHHHHHHh----CCCcHHHHHHHHHHhhCCCEEec-----CCEEEecchHHHHHHH
Confidence 3568999999999999 99999999999999999999999 5899999999877764
No 267
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=94.75 E-value=0.054 Score=50.37 Aligned_cols=99 Identities=22% Similarity=0.156 Sum_probs=78.1
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC---Cceeeehhh
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA---ANAIFMKWV 228 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~---~D~i~~~~v 228 (309)
.+.+|||.=+|.|.+++.++++. ..+ ++.+|+ |+.++..+++ .+|..+.||..+..+. +|-|+|.+.
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g-~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKG-RPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcC-Cce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 47899999999999999999775 445 899998 7777766542 6699999999886444 799999875
Q ss_pred hhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCCC
Q 021707 229 LATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSN 266 (309)
Q Consensus 229 lh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~~ 266 (309)
- .+.+.+-.+.+.+++||.+...+.+..++..
T Consensus 266 ~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~ 297 (341)
T COG2520 266 K------SAHEFLPLALELLKDGGIIHYYEFVPEDDIE 297 (341)
T ss_pred C------cchhhHHHHHHHhhcCcEEEEEeccchhhcc
Confidence 3 2346677777888889999999888877753
No 268
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.72 E-value=0.027 Score=43.22 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=26.5
Q ss_pred CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL 193 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~ 193 (309)
.....++|||||.|.+.--|.+. +.+ +.++|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~-G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYP-GWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCC-cccccc
Confidence 34678999999999999988877 445 888886
No 269
>PRK11050 manganese transport regulator MntR; Provisional
Probab=94.67 E-value=0.072 Score=43.80 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=47.8
Q ss_pred hhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707 11 KKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT 76 (309)
Q Consensus 11 ~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~ 76 (309)
...+...++.+..+||+.+ ++++..+.++++.|...|+|.... ...+.+|+.+..+..
T Consensus 43 ~~~l~~~~~~t~~eLA~~l----~is~stVsr~l~~Le~~GlI~r~~----~~~v~LT~~G~~l~~ 100 (152)
T PRK11050 43 ADLIAEVGEARQVDIAARL----GVSQPTVAKMLKRLARDGLVEMRP----YRGVFLTPEGEKLAQ 100 (152)
T ss_pred HHHHHhcCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEEec----CCceEECchHHHHHH
Confidence 3334346889999999999 999999999999999999998765 457889988766543
No 270
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.61 E-value=0.075 Score=49.83 Aligned_cols=110 Identities=15% Similarity=0.283 Sum_probs=76.8
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec---hhHHhhCC-------------CCCCceEEeCCCC
Q 021707 151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL---PEVVGEAP-------------SIPGVTHIGGDMF 214 (309)
Q Consensus 151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~---p~~~~~a~-------------~~~ri~~~~~d~~ 214 (309)
+.+.+ +.......+|+|+|.|.....++....-.+ -+++++ |.-++... +...++.+.+++.
T Consensus 184 i~dEl-~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~-svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 184 IVDEL-KLGPADVFMDLGSGVGQLVCFVAAYAGCKK-SVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHh-ccCCCCcccCCCcccchhhHHHHHhhcccc-ccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 44444 367788999999999998877776554444 566665 43332221 1256888899998
Q ss_pred CC------CCCCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707 215 NS------IPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS 265 (309)
Q Consensus 215 ~~------~p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~ 265 (309)
.+ ++++++|+++++. |+++...+ +.++..-+++|-+++-.+++.+.+.
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~--Fdp~L~lr-~~eil~~ck~gtrIiS~~~L~~r~r 315 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVA--FDPELKLR-SKEILQKCKDGTRIISSKPLVPRPR 315 (419)
T ss_pred CHHHHHHHhhcceEEEEeccc--CCHHHHHh-hHHHHhhCCCcceEecccccccccc
Confidence 65 4557999999986 34444333 3488888999999999999998543
No 271
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=94.60 E-value=0.061 Score=47.82 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhch
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGK 72 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~ 72 (309)
+++.|+.|||+.+ |++.-.+.|+|..|+..|+++++ +++|++.+...
T Consensus 22 ~~~~~l~eia~~l----glpksT~~RlL~tL~~~G~l~~~-----~~~Y~lG~~~~ 68 (248)
T TIGR02431 22 RPRLTLTDVAEAT----GLTRAAARRFLLTLVELGYVTSD-----GRLFWLTPRVL 68 (248)
T ss_pred CCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEeC-----CCEEEecHHHH
Confidence 5689999999999 99999999999999999999875 47899998553
No 272
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=94.51 E-value=0.065 Score=43.08 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE 69 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~ 69 (309)
+++.|.+|||+.. ++|+..++.+|..|...|++....+ ..|.|.++.
T Consensus 23 ~~~~s~~~ia~~~----~ip~~~l~kil~~L~~~glv~s~~G--~~Ggy~l~~ 69 (135)
T TIGR02010 23 TGPVTLADISERQ----GISLSYLEQLFAKLRKAGLVKSVRG--PGGGYQLGR 69 (135)
T ss_pred CCcCcHHHHHHHH----CcCHHHHHHHHHHHHHCCceEEEeC--CCCCEeccC
Confidence 3589999999999 9999999999999999999987542 145688775
No 273
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=94.50 E-value=0.069 Score=47.96 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhh
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLV 75 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~ 75 (309)
++++|..|||+.+ |++...+.|+|..|+..|++.++. .++.|++++....+.
T Consensus 24 ~~~ls~~eia~~l----gl~kstv~RlL~tL~~~g~v~~~~---~~~~Y~Lg~~~~~l~ 75 (263)
T PRK09834 24 DGGATVGLLAELT----GLHRTTVRRLLETLQEEGYVRRSA---SDDSFRLTLKVRQLS 75 (263)
T ss_pred CCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEec---CCCcEEEcHHHHHHH
Confidence 3569999999999 999999999999999999999875 257899998664443
No 274
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=94.49 E-value=0.061 Score=47.91 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=41.3
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707 19 PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG 71 (309)
Q Consensus 19 ~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~ 71 (309)
++++.|||+++ |++.-.+.|+|..|+..|++++++ .+++|++++-.
T Consensus 19 ~l~l~ela~~~----glpksT~~RlL~tL~~~G~v~~d~---~~g~Y~Lg~~~ 64 (246)
T COG1414 19 GLSLAELAERL----GLPKSTVHRLLQTLVELGYVEQDP---EDGRYRLGPRL 64 (246)
T ss_pred CCCHHHHHHHh----CcCHHHHHHHHHHHHHCCCEEEcC---CCCcEeehHHH
Confidence 45699999999 999999999999999999999997 25689999855
No 275
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.47 E-value=0.048 Score=49.95 Aligned_cols=96 Identities=11% Similarity=0.086 Sum_probs=73.9
Q ss_pred cceEEEecCCccHHHHHHHHhcC-CCceEEEeechhHHhhCCC----C-----CCceEEeCCCCC-CCCC----------
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHH-FICEGINFDLPEVVGEAPS----I-----PGVTHIGGDMFN-SIPA---------- 219 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~p~~~~~a~~----~-----~ri~~~~~d~~~-~~p~---------- 219 (309)
...||-+|||-=.-+-.+- .| .++ +.=+|.|++++..++ . .++++++.|+++ +++.
T Consensus 93 ~~qvViLgaGLDTRayRl~--~~~~~~-vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLD--WPKGTR-VFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEeccccccceeecC--CCCCCe-EEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 5789999999665554443 33 355 777788999987654 2 389999999994 4432
Q ss_pred C-ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707 220 A-NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP 259 (309)
Q Consensus 220 ~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~ 259 (309)
. -++++-.++-+++++++.++|++|....+||..++....
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 1 367888999999999999999999999999987776654
No 276
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=94.47 E-value=0.034 Score=39.24 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=35.7
Q ss_pred hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
+-+.+-.++.+|..|||..+ ++++..++.+|+.|+..|.|.+..
T Consensus 5 i~~~l~~~~~~S~~eLa~~~----~~s~~~ve~mL~~l~~kG~I~~~~ 48 (69)
T PF09012_consen 5 IRDYLRERGRVSLAELAREF----GISPEAVEAMLEQLIRKGYIRKVD 48 (69)
T ss_dssp HHHHHHHS-SEEHHHHHHHT----T--HHHHHHHHHHHHCCTSCEEEE
T ss_pred HHHHHHHcCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCcEEEec
Confidence 33444457899999999999 999999999999999999999875
No 277
>PRK11569 transcriptional repressor IclR; Provisional
Probab=94.40 E-value=0.076 Score=48.02 Aligned_cols=48 Identities=8% Similarity=0.156 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG 71 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~ 71 (309)
+++.|+.|||+.+ |++.-.+.|+|..|+..|++++++ ..++|++.+..
T Consensus 41 ~~~~~lseia~~l----glpksTv~RlL~tL~~~G~l~~~~---~~~~Y~lG~~l 88 (274)
T PRK11569 41 NGSVALTELAQQA----GLPNSTTHRLLTTMQQQGFVRQVG---ELGHWAIGAHA 88 (274)
T ss_pred CCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEcC---CCCeEecCHHH
Confidence 4689999999999 999999999999999999999875 25899998755
No 278
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=94.37 E-value=0.12 Score=44.83 Aligned_cols=66 Identities=21% Similarity=0.267 Sum_probs=52.3
Q ss_pred hhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc----cccCceEEcChhchhhhc
Q 021707 7 RDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE----FRGERKYSLTEIGKSLVT 76 (309)
Q Consensus 7 ~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~----~~~~~~y~~t~~~~~l~~ 76 (309)
+.-+..++...+|+|+.|||+.+ |+++..+++-|+.|++.|+++.... ++..-.|++|..+...+.
T Consensus 13 r~~il~lL~~~g~~sa~elA~~L----gis~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~~f~ 82 (218)
T COG2345 13 RERILELLKKSGPVSADELAEEL----GISPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGREQFP 82 (218)
T ss_pred HHHHHHHHhccCCccHHHHHHHh----CCCHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchhhcc
Confidence 44455666678999999999999 9999999999999999999987542 122236999998876444
No 279
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=94.35 E-value=0.1 Score=43.01 Aligned_cols=63 Identities=13% Similarity=0.077 Sum_probs=53.4
Q ss_pred hhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707 6 CRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT 76 (309)
Q Consensus 6 ~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~ 76 (309)
++..+..+.-..+++...+||+.+ ++++..+..+++-|...|+++..+ .+.+.+|+.|.....
T Consensus 11 YL~~Iy~l~~~~~~~~~~diA~~L----~Vsp~sVt~ml~rL~~~GlV~~~~----y~gi~LT~~G~~~a~ 73 (154)
T COG1321 11 YLETIYELLEEKGFARTKDIAERL----KVSPPSVTEMLKRLERLGLVEYEP----YGGVTLTEKGREKAK 73 (154)
T ss_pred HHHHHHHHHhccCcccHHHHHHHh----CCCcHHHHHHHHHHHHCCCeEEec----CCCeEEChhhHHHHH
Confidence 344455555567899999999999 999999999999999999999986 788999998875554
No 280
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=94.23 E-value=0.076 Score=44.27 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE 69 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~ 69 (309)
+++.|+++||+.. ++|+.++..+|..|...|+|....+ ..|.|.+..
T Consensus 23 ~~~vs~~eIA~~~----~ip~~~l~kIl~~L~~aGLv~s~rG--~~GGy~Lar 69 (164)
T PRK10857 23 AGPVPLADISERQ----GISLSYLEQLFSRLRKNGLVSSVRG--PGGGYLLGK 69 (164)
T ss_pred CCcCcHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEeCCC--CCCCeeccC
Confidence 3589999999999 9999999999999999999997642 146688765
No 281
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=94.18 E-value=0.041 Score=40.09 Aligned_cols=66 Identities=27% Similarity=0.322 Sum_probs=49.4
Q ss_pred hhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccccc---CceEEcChhchhhhc
Q 021707 7 RDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRG---ERKYSLTEIGKSLVT 76 (309)
Q Consensus 7 ~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~---~~~y~~t~~~~~l~~ 76 (309)
++++...+...+.++..+|.+.+ |++...|..-|..|...|+|+......+ .-.|++|+.|+....
T Consensus 2 Rl~Il~~L~~~~~~~f~~L~~~l----~lt~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr~~~~ 70 (80)
T PF13601_consen 2 RLAILALLYANEEATFSELKEEL----GLTDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGREAFE 70 (80)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHT----T--HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHHHHHH
T ss_pred HHHHHHHHhhcCCCCHHHHHHHh----CcCHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHHHHHH
Confidence 45666766667889999999999 9999999999999999999988764211 124999998865443
No 282
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=94.17 E-value=0.072 Score=42.39 Aligned_cols=48 Identities=29% Similarity=0.317 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707 18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG 71 (309)
Q Consensus 18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~ 71 (309)
++.|.++||+.+ ++++..++++|+.|...|++....+ ..|.|.++...
T Consensus 24 ~~~s~~eia~~~----~i~~~~v~~il~~L~~~gli~~~~g--~~ggy~l~~~~ 71 (132)
T TIGR00738 24 GPVSVKEIAERQ----GISRSYLEKILRTLRRAGLVESVRG--PGGGYRLARPP 71 (132)
T ss_pred CcCcHHHHHHHH----CcCHHHHHHHHHHHHHCCcEEeccC--CCCCccCCCCH
Confidence 489999999999 9999999999999999999987531 13567776533
No 283
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=94.08 E-value=0.059 Score=45.65 Aligned_cols=85 Identities=14% Similarity=0.237 Sum_probs=61.4
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCC---------CCceEEeCCCCCC-----C------CC
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSI---------PGVTHIGGDMFNS-----I------PA 219 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~---------~ri~~~~~d~~~~-----~------p~ 219 (309)
+...||-+|||-=.....+...+++++ .+-+|+|++++..++. .++++++.|+.+. + +.
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~-~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVR-WFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEE-EEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred CCcEEEEcCCCCCchHHHhhccccceE-EEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 445899999999999999999888888 8999999988776542 3367899999854 1 12
Q ss_pred C-ceeeehhhhhcCChhHHHHHHHHHH
Q 021707 220 A-NAIFMKWVLATWTDDECKLIMENCY 245 (309)
Q Consensus 220 ~-D~i~~~~vlh~~~d~~~~~iL~~~~ 245 (309)
. -++++=.++.+++++++..+|+.+.
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 2 4677778899999999999998763
No 284
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=94.06 E-value=0.092 Score=43.09 Aligned_cols=47 Identities=26% Similarity=0.267 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChh
Q 021707 18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEI 70 (309)
Q Consensus 18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~ 70 (309)
++.|+++||+.. ++++.+|.+++..|...|+|+...+- .|.|++...
T Consensus 24 ~~~s~~~IA~~~----~is~~~L~kil~~L~kaGlV~S~rG~--~GGy~Lar~ 70 (150)
T COG1959 24 GPVSSAEIAERQ----GISPSYLEKILSKLRKAGLVKSVRGK--GGGYRLARP 70 (150)
T ss_pred CcccHHHHHHHh----CcCHHHHHHHHHHHHHcCCEEeecCC--CCCccCCCC
Confidence 389999999999 99999999999999999999887631 567888753
No 285
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=94.01 E-value=0.13 Score=47.27 Aligned_cols=66 Identities=21% Similarity=0.179 Sum_probs=52.6
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCC
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFN 215 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~ 215 (309)
.+.+++.+. ...+..++|.=+|.|.++.++++..|+.+ ++++|. |.+++.+++. .|++++.+++.+
T Consensus 9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~-vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGR-LIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 456777774 55667999999999999999999988888 999998 6777666542 578888887754
No 286
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=94.01 E-value=0.13 Score=45.65 Aligned_cols=104 Identities=12% Similarity=0.022 Sum_probs=64.2
Q ss_pred CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-----CCCceEEeCCCCCCCCC--Cceeeehhhhh
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-----IPGVTHIGGDMFNSIPA--ANAIFMKWVLA 230 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-----~~ri~~~~~d~~~~~p~--~D~i~~~~vlh 230 (309)
..+.+|+|||||---++.-.....|+++ .++.|+ ...++.... ..+.+....|.....|+ +|+.++.-++|
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~-Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGAT-YIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLP 182 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-E-EEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcE-EEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHH
Confidence 3478999999999999998888888998 999998 444444332 25677777899888555 49999998888
Q ss_pred cCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707 231 TWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS 265 (309)
Q Consensus 231 ~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~ 265 (309)
-+..++. ..-.++.+.+. .-.++|..+...=.+
T Consensus 183 ~le~q~~-g~g~~ll~~~~-~~~~vVSfPtrSL~g 215 (251)
T PF07091_consen 183 CLERQRR-GAGLELLDALR-SPHVVVSFPTRSLGG 215 (251)
T ss_dssp HHHHHST-THHHHHHHHSC-ESEEEEEEES-----
T ss_pred HHHHHhc-chHHHHHHHhC-CCeEEEecccccccc
Confidence 7655442 33334444554 235666666655444
No 287
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=93.97 E-value=0.14 Score=39.87 Aligned_cols=64 Identities=17% Similarity=0.134 Sum_probs=50.1
Q ss_pred hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc--ccCceEEcChhchhhhcC
Q 021707 10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF--RGERKYSLTEIGKSLVTD 77 (309)
Q Consensus 10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~~t~~~~~l~~~ 77 (309)
++..+..+++.|..|||+.+ +++...+.+.++-|...|+|++.... ...-.+.+|+.|..+...
T Consensus 33 iL~~l~~~~~~t~~ela~~~----~~~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~~ 98 (118)
T TIGR02337 33 ILRILAEQGSMEFTQLANQA----CILRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYAS 98 (118)
T ss_pred HHHHHHHcCCcCHHHHHHHh----CCCchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHH
Confidence 33334457899999999999 99999999999999999999986421 112369999999776654
No 288
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=93.97 E-value=0.076 Score=50.39 Aligned_cols=102 Identities=16% Similarity=0.118 Sum_probs=73.9
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcCCC-ceEEEeec-hhHHhhCCCC--------CCceEEeCCCCCCCC-------CC
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHHFI-CEGINFDL-PEVVGEAPSI--------PGVTHIGGDMFNSIP-------AA 220 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~~D~-p~~~~~a~~~--------~ri~~~~~d~~~~~p-------~~ 220 (309)
..++.+|||+=|=||.++...+.. ++ + +|.+|+ ...+.-++++ +++.|+.+|.|+.+. ..
T Consensus 215 ~~~GkrvLNlFsYTGgfSv~Aa~g--GA~~-vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~f 291 (393)
T COG1092 215 LAAGKRVLNLFSYTGGFSVHAALG--GASE-VTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKF 291 (393)
T ss_pred hccCCeEEEecccCcHHHHHHHhc--CCCc-eEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcc
Confidence 334789999999999999988866 44 5 899999 4566666553 678999999997522 14
Q ss_pred ceeeehh------hhhcCC-hhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707 221 NAIFMKW------VLATWT-DDECKLIMENCYKALLAGGKLIACEPVLL 262 (309)
Q Consensus 221 D~i~~~~------vlh~~~-d~~~~~iL~~~~~aL~pgG~l~i~e~~~~ 262 (309)
|+|++=- -=..|. ..+-.+++..+.+.|+|||.++++.....
T Consensus 292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 9998621 001122 23567899999999999999998855443
No 289
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=93.94 E-value=0.1 Score=36.00 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
++|++..|||+.+ |++....+++|..|...|.|+..+
T Consensus 13 ~~p~~T~eiA~~~----gls~~~aR~yL~~Le~eG~V~~~~ 49 (62)
T PF04703_consen 13 NGPLKTREIADAL----GLSIYQARYYLEKLEKEGKVERSP 49 (62)
T ss_dssp TS-EEHHHHHHHH----TS-HHHHHHHHHHHHHCTSEEEES
T ss_pred CCCCCHHHHHHHh----CCCHHHHHHHHHHHHHCCCEEEec
Confidence 7899999999999 999999999999999999998765
No 290
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=93.85 E-value=0.22 Score=46.42 Aligned_cols=105 Identities=17% Similarity=0.240 Sum_probs=62.4
Q ss_pred CCCcceEEEecCCccHHHHHHHH--------hc--------CCCceEEEeechh-----HHhhCCC-------CCC--ce
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQ--------KH--------HFICEGINFDLPE-----VVGEAPS-------IPG--VT 207 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~--------~~--------p~~~~~~~~D~p~-----~~~~a~~-------~~r--i~ 207 (309)
.++.-+|+|+||.+|..+..+.. ++ |.++ ++.-|+|. +...... ..+ +.
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~-v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQ-VFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEE-EEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEE-EEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 45667999999999997765543 23 2356 78888852 2221111 133 45
Q ss_pred EEeCCCCCC-CCCC--ceeeehhhhhcCC-------h------------------------------hHHHHHHHHHHHh
Q 021707 208 HIGGDMFNS-IPAA--NAIFMKWVLATWT-------D------------------------------DECKLIMENCYKA 247 (309)
Q Consensus 208 ~~~~d~~~~-~p~~--D~i~~~~vlh~~~-------d------------------------------~~~~~iL~~~~~a 247 (309)
-++|.|+.. +|.. |+++.++.||-++ + .|-..+|+.=++-
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 567999986 7774 9999999998432 1 2234455555677
Q ss_pred cCCCcEEEEeccccCC
Q 021707 248 LLAGGKLIACEPVLLD 263 (309)
Q Consensus 248 L~pgG~l~i~e~~~~~ 263 (309)
|+|||++++.=.-.++
T Consensus 173 Lv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 173 LVPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEEE-ST
T ss_pred eccCcEEEEEEeeccc
Confidence 8999999998776666
No 291
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=93.75 E-value=0.11 Score=46.89 Aligned_cols=48 Identities=13% Similarity=-0.015 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG 71 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~ 71 (309)
++++|+.|||+.+ |++.-.+.|+|..|+..|+|.+++ ..++|++.+-.
T Consensus 38 ~~~~tl~eIa~~l----glpkStv~RlL~tL~~~G~l~~~~---~~~~Y~lG~~l 85 (271)
T PRK10163 38 GGSSSVSDISLNL----DLPLSTTFRLLKVLQAADFVYQDS---QLGWWHIGLGV 85 (271)
T ss_pred CCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEcC---CCCeEEecHHH
Confidence 3579999999999 999999999999999999998875 25789999754
No 292
>KOG2730 consensus Methylase [General function prediction only]
Probab=93.71 E-value=0.041 Score=47.65 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=45.2
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS 216 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~ 216 (309)
....|+|.-||-|...+.++..+|. ++.+|. |--++.|+.+ +||+|++||+++.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~---VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~ 155 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY---VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDL 155 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe---EEEEeccHHHHHHHhccceeecCCceeEEEechHHHH
Confidence 4578999999999999999999886 888998 5557777653 8999999999764
No 293
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=93.62 E-value=0.15 Score=46.78 Aligned_cols=66 Identities=27% Similarity=0.228 Sum_probs=48.8
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCC
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFN 215 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~ 215 (309)
...+++.+. ......++|.=-|.|.++.++++++|+.+ ++++|. |.+++.+++. +|+.++.++|-+
T Consensus 9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~-li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGR-LIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-E-EEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCe-EEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 456777775 66678999999999999999999999988 999999 7788666542 789999888753
No 294
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=93.59 E-value=0.18 Score=33.92 Aligned_cols=48 Identities=25% Similarity=0.327 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE 69 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~ 69 (309)
+++.|..+|++.+ +++...+.+.|+.|...|++.....+ ....|.++.
T Consensus 8 ~~~~~~~~i~~~l----~is~~~v~~~l~~L~~~g~i~~~~~~-~~~~~~~~~ 55 (66)
T smart00418 8 EGELCVCELAEIL----GLSQSTVSHHLKKLREAGLVESRREG-KRVYYSLTD 55 (66)
T ss_pred cCCccHHHHHHHH----CCCHHHHHHHHHHHHHCCCeeeeecC-CEEEEEEch
Confidence 7889999999999 99999999999999999999866421 124566665
No 295
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=93.52 E-value=0.057 Score=52.25 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=43.3
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCC
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDM 213 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~ 213 (309)
.+....++||-||+|.++.++++..- + ++++++ |+.++.|+++ .+.+|++|-.
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~~--~-ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqa 440 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGVK--R-VIGVEISPDAVEDAEKNAQINGISNATFIVGQA 440 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcccc--c-eeeeecChhhcchhhhcchhcCccceeeeecch
Confidence 55668999999999999999997753 4 899998 7788777654 7889999943
No 296
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=93.46 E-value=0.081 Score=48.14 Aligned_cols=98 Identities=17% Similarity=0.235 Sum_probs=66.7
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--------CCceEEeCCCCCCCC------CCceee
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--------PGVTHIGGDMFNSIP------AANAIF 224 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--------~ri~~~~~d~~~~~p------~~D~i~ 224 (309)
+..+|||+=|=+|.++...+... -.+ ++.+|. ...++.++++ ++++++++|.|+.+. ..|+|+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~-v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG-AKE-VVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT-ESE-EEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCC-CCE-EEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 35799999999999999876542 335 899998 4566665542 689999999987421 249988
Q ss_pred eh---hhhhcCC-hhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707 225 MK---WVLATWT-DDECKLIMENCYKALLAGGKLIACEP 259 (309)
Q Consensus 225 ~~---~vlh~~~-d~~~~~iL~~~~~aL~pgG~l~i~e~ 259 (309)
+- +.=..+. ..+-.++++.+.+.|+|||.|+.+-.
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 62 1111122 23457899999999999999876643
No 297
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=93.42 E-value=0.15 Score=34.52 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=39.2
Q ss_pred hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
+.+.+-.++.+|++|||+.+ ++++.-++|=|..|...|++.+..
T Consensus 5 Il~~l~~~~~~s~~ela~~~----~VS~~TiRRDl~~L~~~g~i~r~~ 48 (57)
T PF08220_consen 5 ILELLKEKGKVSVKELAEEF----GVSEMTIRRDLNKLEKQGLIKRTH 48 (57)
T ss_pred HHHHHHHcCCEEHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEEc
Confidence 44555567899999999999 999999999999999999999885
No 298
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=93.19 E-value=0.36 Score=41.69 Aligned_cols=100 Identities=18% Similarity=0.174 Sum_probs=55.1
Q ss_pred cceEEEecCCccHHHHH---HHHhc-CCCceEEEeec--hhHHhhCCC----CCCceEEeCCCCCC---CCC------C-
Q 021707 161 VKRLVDVGGSAGDCLRM---ILQKH-HFICEGINFDL--PEVVGEAPS----IPGVTHIGGDMFNS---IPA------A- 220 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~---l~~~~-p~~~~~~~~D~--p~~~~~a~~----~~ri~~~~~d~~~~---~p~------~- 220 (309)
+..|+++|--.|.-+.- +++.+ ++.+ ++++|+ +..-..+.+ .+||+++.||-.++ .+. .
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~-VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGK-VIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---E-EEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCce-EEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 57999999877665543 44555 7777 999998 232222333 38999999998754 111 1
Q ss_pred ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
-++++-..-|.. +.+.+.|+.....++||+++++-|.....
T Consensus 112 ~vlVilDs~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~~~~ 152 (206)
T PF04989_consen 112 PVLVILDSSHTH--EHVLAELEAYAPLVSPGSYLIVEDTIIED 152 (206)
T ss_dssp SEEEEESS------SSHHHHHHHHHHT--TT-EEEETSHHHHH
T ss_pred ceEEEECCCccH--HHHHHHHHHhCccCCCCCEEEEEeccccc
Confidence 233333443433 34578888899999999999999876543
No 299
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=93.04 E-value=0.18 Score=32.71 Aligned_cols=42 Identities=14% Similarity=0.213 Sum_probs=36.7
Q ss_pred hhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 12 KVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 12 ~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
+.+..+++.|..+|++.+ ++++..+.+.|..|...|++....
T Consensus 7 ~~l~~~~~~s~~~l~~~l----~~s~~tv~~~l~~L~~~g~i~~~~ 48 (53)
T smart00420 7 ELLAQQGKVSVEELAELL----GVSEMTIRRDLNKLEEQGLLTRVH 48 (53)
T ss_pred HHHHHcCCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEEee
Confidence 333346789999999999 999999999999999999998874
No 300
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=93.04 E-value=0.34 Score=41.15 Aligned_cols=100 Identities=14% Similarity=0.052 Sum_probs=62.3
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC------CCCCceeee
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS------IPAANAIFM 225 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~------~p~~D~i~~ 225 (309)
.+.++||+=+|+|.++.+.+.++-. + ++.+|. ...+..+++ ..+++++..|.... .+..|+|++
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~-~-~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAA-R-VVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCc-e-EEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 4689999999999999999999633 4 788887 333433332 37888888887732 112599987
Q ss_pred hhhhh-cCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707 226 KWVLA-TWTDDECKLIMENCYKALLAGGKLIACEPVLL 262 (309)
Q Consensus 226 ~~vlh-~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~ 262 (309)
=--.+ ..-+.+..-++-.-...|+|+|.++ +|.-..
T Consensus 121 DPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv-~E~~~~ 157 (187)
T COG0742 121 DPPYAKGLLDKELALLLLEENGWLKPGALIV-VEHDKD 157 (187)
T ss_pred CCCCccchhhHHHHHHHHHhcCCcCCCcEEE-EEeCCC
Confidence 54443 1222221222222456689998555 444433
No 301
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=92.93 E-value=0.19 Score=34.40 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=40.6
Q ss_pred hhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 7 RDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 7 ~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
+..++++.-.+++++..+||+.+ ++++..+..+++-|...|+|+..+
T Consensus 10 L~~Iy~l~~~~~~v~~~~iA~~L----~vs~~tvt~ml~~L~~~GlV~~~~ 56 (60)
T PF01325_consen 10 LKAIYELSEEGGPVRTKDIAERL----GVSPPTVTEMLKRLAEKGLVEYEP 56 (60)
T ss_dssp HHHHHHHHHCTSSBBHHHHHHHH----TS-HHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHcCCCCccHHHHHHHH----CCChHHHHHHHHHHHHCCCEEecC
Confidence 44566666677899999999999 999999999999999999999875
No 302
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=92.89 E-value=0.14 Score=40.78 Aligned_cols=47 Identities=28% Similarity=0.413 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE 69 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~ 69 (309)
+++.|+.|||+.+ ++++..+.+.|+.|...|++....+ ..+.|.+..
T Consensus 23 ~~~~s~~eia~~l----~is~~~v~~~l~~L~~~Gli~~~~g--~~ggy~l~~ 69 (130)
T TIGR02944 23 SQPYSAAEIAEQT----GLNAPTVSKILKQLSLAGIVTSKRG--VEGGYTLAR 69 (130)
T ss_pred CCCccHHHHHHHH----CcCHHHHHHHHHHHHHCCcEEecCC--CCCChhhcC
Confidence 4689999999999 9999999999999999999986531 135566643
No 303
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=92.85 E-value=0.2 Score=37.37 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=41.4
Q ss_pred HHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707 22 VSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT 76 (309)
Q Consensus 22 ~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~ 76 (309)
+.+||+.+ ++++..+.+.++.|...|+|.... +..|.+|+.+..+..
T Consensus 2 ~~ela~~l----~is~stvs~~l~~L~~~glI~r~~----~~~~~lT~~g~~~~~ 48 (96)
T smart00529 2 TSEIAERL----NVSPPTVTQMLKKLEKDGLVEYEP----YRGITLTEKGRRLAR 48 (96)
T ss_pred HHHHHHHh----CCChHHHHHHHHHHHHCCCEEEcC----CCceEechhHHHHHH
Confidence 56899999 999999999999999999999986 568999998876653
No 304
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=92.79 E-value=0.24 Score=35.75 Aligned_cols=64 Identities=11% Similarity=0.120 Sum_probs=50.5
Q ss_pred hhhhhhhhhhcC-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhh
Q 021707 5 ECRDGRKKVRLA-NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSL 74 (309)
Q Consensus 5 ~~~~g~~~~~l~-~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l 74 (309)
+.+..++++... +.|+...+||+.+ ++++..++--|..|.++|||+... +..+.|..|..+-.+
T Consensus 8 ~IL~alV~~Y~~~~~PVgSk~ia~~l----~~s~aTIRN~M~~Le~lGlve~~p--~~s~GriPT~~aYr~ 72 (78)
T PF03444_consen 8 EILKALVELYIETGEPVGSKTIAEEL----GRSPATIRNEMADLEELGLVESQP--HPSGGRIPTDKAYRA 72 (78)
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHH----CCChHHHHHHHHHHHHCCCccCCC--CCCCCCCcCHHHHHH
Confidence 456778888776 4699999999999 999999999999999999998532 013567777766433
No 305
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=92.76 E-value=0.63 Score=42.57 Aligned_cols=96 Identities=16% Similarity=0.216 Sum_probs=67.1
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeec--------hhHHhhCCC------------------------------
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL--------PEVVGEAPS------------------------------ 202 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~--------p~~~~~a~~------------------------------ 202 (309)
..+||-=|||.|.++..|+..++.++ +- ++ .-++...+.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~q-GN--EfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQ-GN--EFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred CceEEecCCCchhHHHHHHHhccccc-cc--HHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 57899999999999999999988876 43 22 112221111
Q ss_pred ---------CCCceEEeCCCCCCCC--C---C-ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707 203 ---------IPGVTHIGGDMFNSIP--A---A-NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL 261 (309)
Q Consensus 203 ---------~~ri~~~~~d~~~~~p--~---~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~ 261 (309)
....+.-+|||.+-.+ . . |+|+..+.+. +.....+-|..|++.|+|||.++=+-+++
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~GGvWiNlGPLl 299 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKPGGVWINLGPLL 299 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccCCcEEEecccee
Confidence 0234556789987533 2 2 8888876653 34557889999999999999888666653
No 306
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.72 E-value=0.071 Score=51.38 Aligned_cols=113 Identities=15% Similarity=0.154 Sum_probs=71.9
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC---CC
Q 021707 149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS---IP 218 (309)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~---~p 218 (309)
..+++.++ ..+..+++|.=||.|.++..++++. .+ ++++|. ++.++.|+++ ++++|+++|..+. +.
T Consensus 283 ~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~~--~~-V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~ 358 (432)
T COG2265 283 ETALEWLE-LAGGERVLDLYCGVGTFGLPLAKRV--KK-VHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW 358 (432)
T ss_pred HHHHHHHh-hcCCCEEEEeccCCChhhhhhcccC--CE-EEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc
Confidence 33444443 4556799999999999999999543 34 999998 7777776642 6799999998764 21
Q ss_pred ---CCceeeehhhhhcCChhHHH-HHHHHHHHhcCCCcEEEEeccccCCCCCchhhhhhhhcccHhhhc
Q 021707 219 ---AANAIFMKWVLATWTDDECK-LIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMT 283 (309)
Q Consensus 219 ---~~D~i~~~~vlh~~~d~~~~-~iL~~~~~aL~pgG~l~i~e~~~~~~~~~~~~~~~~~~~dl~ml~ 283 (309)
..|.|+. |-|..-+. .+++.+.+ ++|-..++|. +- |. .-..|+..|+
T Consensus 359 ~~~~~d~Vvv-----DPPR~G~~~~~lk~l~~-~~p~~IvYVS--CN-------P~---TlaRDl~~L~ 409 (432)
T COG2265 359 EGYKPDVVVV-----DPPRAGADREVLKQLAK-LKPKRIVYVS--CN-------PA---TLARDLAILA 409 (432)
T ss_pred ccCCCCEEEE-----CCCCCCCCHHHHHHHHh-cCCCcEEEEe--CC-------HH---HHHHHHHHHH
Confidence 1377665 33332233 44444443 5666666664 11 11 2357887787
No 307
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=92.72 E-value=0.19 Score=41.31 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE 69 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~ 69 (309)
+++.|+++||+.. ++++.+|+.+|..|...|+|+...+ ..|.|+++.
T Consensus 22 ~~~~s~~eIA~~~----~is~~~L~kIl~~L~~aGlv~S~rG--~~GGy~La~ 68 (153)
T PRK11920 22 GKLSRIPEIARAY----GVSELFLFKILQPLVEAGLVETVRG--RNGGVRLGR 68 (153)
T ss_pred CCcCcHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEeecC--CCCCeeecC
Confidence 4578999999999 9999999999999999999988763 146788875
No 308
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=92.57 E-value=1.2 Score=39.93 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=63.6
Q ss_pred HHHHHHhhcCCccc----HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeech-----hHHhhCCCC
Q 021707 134 GLMRRAISGVSVPF----MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDLP-----EVVGEAPSI 203 (309)
Q Consensus 134 ~~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~p-----~~~~~a~~~ 203 (309)
+.|-.+|...++-. +..++..++ ...+.+|++-|.|+|.++.++++.- |.-+ ..-+|.- .+.++-+++
T Consensus 76 ELWTl~LphRTQI~Yt~Dia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGh-l~tfefH~~Ra~ka~eeFr~h 153 (314)
T KOG2915|consen 76 ELWTLALPHRTQILYTPDIAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGH-LYTFEFHETRAEKALEEFREH 153 (314)
T ss_pred HHhhhhccCcceEEecccHHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcc-eEEEEecHHHHHHHHHHHHHh
Confidence 44666777777632 445777776 7788999999999999999999985 6656 8888883 233333333
Q ss_pred ---CCceEEeCCCCCC-CCC----Cceeee
Q 021707 204 ---PGVTHIGGDMFNS-IPA----ANAIFM 225 (309)
Q Consensus 204 ---~ri~~~~~d~~~~-~p~----~D~i~~ 225 (309)
+++++...|.-.. ++. +|.|++
T Consensus 154 gi~~~vt~~hrDVc~~GF~~ks~~aDaVFL 183 (314)
T KOG2915|consen 154 GIGDNVTVTHRDVCGSGFLIKSLKADAVFL 183 (314)
T ss_pred CCCcceEEEEeecccCCccccccccceEEE
Confidence 7888888887554 322 477775
No 309
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=92.51 E-value=0.14 Score=34.77 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=31.8
Q ss_pred CCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 20 LSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 20 ~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
.|..|||+.+ ++++..+.+.++.|...|+|++..
T Consensus 22 ~t~~~la~~l----~~~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 22 LTQSELAERL----GISKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp EEHHHHHHHH----TS-HHHHHHHHHHHHHTTSEEEEE
T ss_pred cCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEeC
Confidence 8999999999 999999999999999999999875
No 310
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=92.34 E-value=0.31 Score=33.75 Aligned_cols=47 Identities=30% Similarity=0.397 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707 18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE 69 (309)
Q Consensus 18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~ 69 (309)
++.+..||++.+ +++...+.+.|+.|...|++...... ....|++++
T Consensus 19 ~~~~~~ei~~~~----~i~~~~i~~~l~~L~~~g~i~~~~~~-~~~~~~~~~ 65 (78)
T cd00090 19 GPLTVSELAERL----GLSQSTVSRHLKKLEEAGLVESRREG-RRVYYSLTD 65 (78)
T ss_pred CCcCHHHHHHHH----CcCHhHHHHHHHHHHHCCCeEEEEec-cEEEEEeCC
Confidence 349999999999 99999999999999999999876421 135678876
No 311
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=92.16 E-value=0.37 Score=42.02 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=50.7
Q ss_pred cchhhhhhhhhhcC--CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707 3 DNECRDGRKKVRLA--NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT 76 (309)
Q Consensus 3 ~~~~~~g~~~~~l~--~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~ 76 (309)
+-+|+.-+..+... ...+|..|||+.+ ++++..+.|.|+.|...|++++.... ....+++|+.+..+..
T Consensus 3 ~~~~Lk~iallg~l~~~~~IS~~eLA~~L----~iS~~Tvsr~Lk~LEe~GlI~R~~~~-r~~~v~LTekG~~ll~ 73 (217)
T PRK14165 3 DIEALKKLALLGAVNNTVKISSSEFANHT----GTSSKTAARILKQLEDEGYITRTIVP-RGQLITITEKGLDVLY 73 (217)
T ss_pred hhHHHHHHHHHhccCCCCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEEEcC-CceEEEECHHHHHHHH
Confidence 33444444443322 3468999999999 99999999999999999999887521 1357899988866553
No 312
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=92.12 E-value=0.4 Score=31.88 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=32.8
Q ss_pred CCC-CHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 18 TPL-SVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 18 ~~~-t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
+.+ |..|||+.. +++...+++.+..|...|++....
T Consensus 18 ~~l~s~~~la~~~----~vs~~tv~~~l~~L~~~g~i~~~~ 54 (60)
T smart00345 18 DKLPSERELAAQL----GVSRTTVREALSRLEAEGLVQRRP 54 (60)
T ss_pred CcCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEEec
Confidence 445 899999999 999999999999999999998765
No 313
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=91.95 E-value=0.2 Score=37.16 Aligned_cols=58 Identities=28% Similarity=0.339 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccC--ceEEcChhchhhhc
Q 021707 16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGE--RKYSLTEIGKSLVT 76 (309)
Q Consensus 16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~--~~y~~t~~~~~l~~ 76 (309)
..|+....||.+.+ | |+++..|.+-|+.|...|+|++......+ -.|++|+.|..|..
T Consensus 15 ~~g~~rf~el~~~l-~--~is~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~~ 74 (90)
T PF01638_consen 15 FQGPMRFSELQRRL-P--GISPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELLP 74 (90)
T ss_dssp TTSSEEHHHHHHHS-T--TS-HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHHH
T ss_pred HhCCCcHHHHHHhc-c--hhHHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHHH
Confidence 45999999999998 5 78999999999999999999886421111 25999999987764
No 314
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=91.76 E-value=0.38 Score=38.91 Aligned_cols=57 Identities=14% Similarity=0.122 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707 16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT 76 (309)
Q Consensus 16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~ 76 (309)
.+++.|..|||+.+ ++++..+.++++-|+..|+|.+... |...-.+.+|+.|..+..
T Consensus 51 ~~~~~t~~eLa~~l----~i~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~~ 109 (144)
T PRK11512 51 CAACITPVELKKVL----SVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAICE 109 (144)
T ss_pred HcCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHHH
Confidence 46789999999999 9999999999999999999998652 111234788888876654
No 315
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=91.70 E-value=0.076 Score=49.88 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=42.3
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCC
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDM 213 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~ 213 (309)
.+.+++.++ ..+. +|+|+=||.|.++..+++.+. + ++++|. +.+++.|+++ ++++|+.++.
T Consensus 186 ~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~--~-V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 186 YEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAK--K-VIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSS--E-EEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCC--e-EEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 445555654 4333 799999999999999997764 3 899998 7777777642 7899998764
No 316
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=91.63 E-value=0.32 Score=39.32 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707 18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE 69 (309)
Q Consensus 18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~ 69 (309)
.+.+.++||+.. |+++..+++.|..|...|+++...+- .|.|.+..
T Consensus 24 ~~~s~~~ia~~~----~is~~~vrk~l~~L~~~Glv~s~~G~--~GG~~l~~ 69 (141)
T PRK11014 24 RMTSISEVTEVY----GVSRNHMVKIINQLSRAGYVTAVRGK--NGGIRLGK 69 (141)
T ss_pred CccCHHHHHHHH----CcCHHHHHHHHHHHHhCCEEEEecCC--CCCeeecC
Confidence 478999999999 99999999999999999999887621 35677764
No 317
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=91.60 E-value=0.35 Score=41.62 Aligned_cols=55 Identities=27% Similarity=0.365 Sum_probs=44.6
Q ss_pred hhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707 11 KKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG 71 (309)
Q Consensus 11 ~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~ 71 (309)
...+..+++.+..|||+.+ ++++..+.+.|..|...|++.+.+. ....|.+|+.|
T Consensus 149 L~~l~~~g~~s~~eia~~l----~is~stv~r~L~~Le~~GlI~r~~~--r~~~~~lT~~G 203 (203)
T TIGR01884 149 LEVLKAEGEKSVKNIAKKL----GKSLSTISRHLRELEKKGLVEQKGR--KGKRYSLTKLG 203 (203)
T ss_pred HHHHHHcCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEEcC--CccEEEeCCCC
Confidence 3333345789999999999 9999999999999999999998851 14578888754
No 318
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=91.53 E-value=0.39 Score=36.10 Aligned_cols=45 Identities=7% Similarity=0.039 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcC
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLT 68 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t 68 (309)
..++|..|||+.+ |++...+.|.|..|...|+|...+ +-+.|+.+
T Consensus 45 ~~~is~~eLa~~~----g~sr~tVsr~L~~Le~~GlI~r~~---~~~~~~~n 89 (95)
T TIGR01610 45 QDRVTATVIAELT----GLSRTHVSDAIKSLARRRIIFRQG---MMGIVGVN 89 (95)
T ss_pred CCccCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeeeec---CCceeecC
Confidence 4689999999999 999999999999999999999875 24778877
No 319
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=91.44 E-value=0.32 Score=38.55 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=41.1
Q ss_pred hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
+-+++++..++|.|..|+|+.. |-+...+.|-|+.|...|++....
T Consensus 67 leLl~~Ia~~~P~Si~ElAe~v----gRdv~nvhr~Ls~l~~~GlI~fe~ 112 (144)
T COG4190 67 LELLELIAQEEPASINELAELV----GRDVKNVHRTLSTLADLGLIFFEE 112 (144)
T ss_pred HHHHHHHHhcCcccHHHHHHHh----CcchHHHHHHHHHHHhcCeEEEec
Confidence 3466777778999999999999 999999999999999999998775
No 320
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=91.29 E-value=0.22 Score=45.07 Aligned_cols=101 Identities=17% Similarity=0.144 Sum_probs=67.8
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhH-HhhCCC----------CCCceEEeCCCCCC---CCC--Cc
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEV-VGEAPS----------IPGVTHIGGDMFNS---IPA--AN 221 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~-~~~a~~----------~~ri~~~~~d~~~~---~p~--~D 221 (309)
..++.+++-||+|.|.+..+..++ +.+..+..+|.... ++.-++ .++|.++.||-+.. .+. .|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 456789999999999999999988 66654677777443 333222 38999999997654 433 38
Q ss_pred eeeehhhhhcCChhH---HHHHHHHHHHhcCCCcEEEEeccc
Q 021707 222 AIFMKWVLATWTDDE---CKLIMENCYKALLAGGKLIACEPV 260 (309)
Q Consensus 222 ~i~~~~vlh~~~d~~---~~~iL~~~~~aL~pgG~l~i~e~~ 260 (309)
+|+.--.=- ..+.. -...+.-+.++|||||.+++..-.
T Consensus 198 Vii~dssdp-vgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec 238 (337)
T KOG1562|consen 198 VIITDSSDP-VGPACALFQKPYFGLVLDALKGDGVVCTQGEC 238 (337)
T ss_pred EEEEecCCc-cchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence 887532110 01111 134555678899999999887643
No 321
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=91.18 E-value=2.1 Score=40.28 Aligned_cols=110 Identities=18% Similarity=0.206 Sum_probs=70.5
Q ss_pred hhcCCCCCcceEEEecCCccHHHHHHHHhcCC--CceEEEeec-hhHHhhCCC----C--CCceEEeCCCCCC---CCC-
Q 021707 153 DSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF--ICEGINFDL-PEVVGEAPS----I--PGVTHIGGDMFNS---IPA- 219 (309)
Q Consensus 153 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~~D~-p~~~~~a~~----~--~ri~~~~~d~~~~---~p~- 219 (309)
..++ -..+.+|+|..++.|.=+..+++..++ .. ++.+|. +.-+...++ . .++..+..|.... .+.
T Consensus 150 ~~L~-p~pge~VlD~cAAPGGKTthla~~~~~~~~i-V~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~ 227 (355)
T COG0144 150 LVLD-PKPGERVLDLCAAPGGKTTHLAELMENEGAI-VVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGG 227 (355)
T ss_pred HHcC-CCCcCEEEEECCCCCCHHHHHHHhcCCCCce-EEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccccc
Confidence 3443 556789999999999999999998876 34 589998 333333322 1 4466777765422 222
Q ss_pred --Cceeee------hhhhh-------cCChh-------HHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 220 --ANAIFM------KWVLA-------TWTDD-------ECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 220 --~D~i~~------~~vlh-------~~~d~-------~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
+|.|++ ..+++ .|..+ --.+||+.+.+.|+|||.|+-..-.+...
T Consensus 228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e 294 (355)
T COG0144 228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE 294 (355)
T ss_pred CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh
Confidence 466663 23332 33332 24689999999999999887665444433
No 322
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.99 E-value=0.08 Score=43.75 Aligned_cols=99 Identities=16% Similarity=0.124 Sum_probs=66.0
Q ss_pred cceEEEecCC-ccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC---------CCCceEEeCCCCCC---CCC--Cceee
Q 021707 161 VKRLVDVGGS-AGDCLRMILQKHHFICEGINFDL-PEVVGEAPS---------IPGVTHIGGDMFNS---IPA--ANAIF 224 (309)
Q Consensus 161 ~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~---------~~ri~~~~~d~~~~---~p~--~D~i~ 224 (309)
+.+|+++||| +|..+..++...|... +.+-|= ...++..++ ..++..+..+.... +.. .|+|+
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~-v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSS-VWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCce-EEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 4689999999 6667777777778877 888785 333333222 14454444444433 112 49999
Q ss_pred ehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707 225 MKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL 262 (309)
Q Consensus 225 ~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~ 262 (309)
+...+- -++-...+.+.|+..|+|.|+-++..+-..
T Consensus 109 aADClF--fdE~h~sLvdtIk~lL~p~g~Al~fsPRRg 144 (201)
T KOG3201|consen 109 AADCLF--FDEHHESLVDTIKSLLRPSGRALLFSPRRG 144 (201)
T ss_pred eccchh--HHHHHHHHHHHHHHHhCcccceeEecCccc
Confidence 988762 445556888999999999999777654433
No 323
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=90.88 E-value=0.99 Score=40.14 Aligned_cols=99 Identities=15% Similarity=0.017 Sum_probs=61.7
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCC------------CCceEEeCCCCCC------CCC-C
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSI------------PGVTHIGGDMFNS------IPA-A 220 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~------------~ri~~~~~d~~~~------~p~-~ 220 (309)
+..+||++|+|+|..++..+. ....+ ++.-|.|.++...+.. ..+....-++-++ .|. .
T Consensus 86 ~~~~vlELGsGtglvG~~aa~-~~~~~-v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAAL-LLGAE-VVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHH-Hhcce-eccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 356899999999965555544 34667 8888887666554321 2455555444433 334 6
Q ss_pred ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707 221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL 262 (309)
Q Consensus 221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~ 262 (309)
|+|+.+.++++-..- ..+++-++.-|..++.+++.-....
T Consensus 164 DlilasDvvy~~~~~--e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 164 DLILASDVVYEEESF--EGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred cEEEEeeeeecCCcc--hhHHHHHHHHHhcCCeEEEEEeccc
Confidence 999999888643322 3556666667777775555544444
No 324
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=90.74 E-value=0.21 Score=33.65 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=35.3
Q ss_pred hcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 14 RLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 14 ~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
+-..++.|..+||+.+ +++...+.++++-|...|++++..
T Consensus 12 l~~~~~~~~~~la~~~----~~~~~~~t~~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 12 LYENGGITQSELAEKL----GISRSTVTRIIKRLEKKGLIERER 51 (59)
T ss_dssp HHHHSSEEHHHHHHHH----TS-HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHcCCCCHHHHHHHH----CCChhHHHHHHHHHHHCCCEEecc
Confidence 3346789999999999 999999999999999999998875
No 325
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=90.72 E-value=0.47 Score=44.97 Aligned_cols=61 Identities=5% Similarity=0.012 Sum_probs=53.1
Q ss_pred CCceEEeCCCCCC---CCC-C-ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 204 PGVTHIGGDMFNS---IPA-A-NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 204 ~ri~~~~~d~~~~---~p~-~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
+||+++.+++.+. .|. . |.+++..+.-.+++++..++++++.++++|||+++.-....+..
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~~ 340 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPPW 340 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCCC
Confidence 8999999988653 433 4 99999999988999999999999999999999999988776654
No 326
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=90.68 E-value=0.35 Score=40.89 Aligned_cols=46 Identities=15% Similarity=0.036 Sum_probs=40.6
Q ss_pred hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
.-+++++...|++|.++||+.+ |++...+++.|..|...|++....
T Consensus 25 ~~Vl~~L~~~g~~tdeeLA~~L----gi~~~~VRk~L~~L~e~gLv~~~r 70 (178)
T PRK06266 25 FEVLKALIKKGEVTDEEIAEQT----GIKLNTVRKILYKLYDARLADYKR 70 (178)
T ss_pred hHHHHHHHHcCCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCCeEEee
Confidence 3466777777999999999999 999999999999999999998543
No 327
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=90.62 E-value=0.38 Score=39.84 Aligned_cols=43 Identities=12% Similarity=-0.035 Sum_probs=39.1
Q ss_pred hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707 10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH 56 (309)
Q Consensus 10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~ 56 (309)
+++.++..+.+|-+|||+.+ |++...++++|..|...|++...
T Consensus 19 Vl~aL~~~~~~tdEeLa~~L----gi~~~~VRk~L~~L~e~~Lv~~~ 61 (158)
T TIGR00373 19 VLFSLGIKGEFTDEEISLEL----GIKLNEVRKALYALYDAGLADYK 61 (158)
T ss_pred HHHHHhccCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCceee
Confidence 56777778899999999999 99999999999999999999644
No 328
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=90.56 E-value=0.54 Score=31.93 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=31.2
Q ss_pred CCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 20 LSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 20 ~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
.|..+||+.+ +++...+.+.|..|...|+++...
T Consensus 26 ~~~~~la~~~----~is~~~v~~~l~~L~~~G~i~~~~ 59 (66)
T cd07377 26 PSERELAEEL----GVSRTTVREALRELEAEGLVERRP 59 (66)
T ss_pred CCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEecC
Confidence 3599999999 999999999999999999998664
No 329
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=90.19 E-value=2 Score=40.59 Aligned_cols=108 Identities=11% Similarity=0.014 Sum_probs=68.8
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCC----Cce----------------------------------EEE
Q 021707 149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF----ICE----------------------------------GIN 190 (309)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~----~~~----------------------------------~~~ 190 (309)
..++..-. |.....++|==||+|+++++.+...++ +.+ .++
T Consensus 181 aAil~lag-w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G 259 (381)
T COG0116 181 AAILLLAG-WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG 259 (381)
T ss_pred HHHHHHcC-CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence 34444443 877789999999999999998887753 222 568
Q ss_pred eec-hhHHhhCCCC-------CCceEEeCCCCCC-CC-C-Cceeeehhhhhc-CChhHHH-----HHHHHHHHhcCCCcE
Q 021707 191 FDL-PEVVGEAPSI-------PGVTHIGGDMFNS-IP-A-ANAIFMKWVLAT-WTDDECK-----LIMENCYKALLAGGK 253 (309)
Q Consensus 191 ~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~p-~-~D~i~~~~vlh~-~~d~~~~-----~iL~~~~~aL~pgG~ 253 (309)
.|. +.+++.|+.+ +.|+|..+|+... -| + .|+|+++----. +.++..+ ++.+.+++.++--++
T Consensus 260 ~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~ 339 (381)
T COG0116 260 SDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSR 339 (381)
T ss_pred ecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCce
Confidence 998 7788877653 7799999998754 22 2 388887632211 2222222 334444455554455
Q ss_pred EEEe
Q 021707 254 LIAC 257 (309)
Q Consensus 254 l~i~ 257 (309)
.++.
T Consensus 340 ~v~t 343 (381)
T COG0116 340 YVFT 343 (381)
T ss_pred EEEE
Confidence 5554
No 330
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=90.04 E-value=0.61 Score=32.59 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=39.4
Q ss_pred cCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChh
Q 021707 15 LANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEI 70 (309)
Q Consensus 15 l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~ 70 (309)
+.+++.|..+||+.+ |++...+++-++.|.+.|+..... +..|.+.+.
T Consensus 9 L~~~~~~~~eLa~~l----~vS~~tv~~~l~~L~~~g~~i~~~----~~g~~l~~~ 56 (69)
T TIGR00122 9 LADNPFSGEKLGEAL----GMSRTAVNKHIQTLREWGVDVLTV----GKGYRLPPP 56 (69)
T ss_pred HHcCCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCCeEEec----CCceEecCc
Confidence 457789999999999 999999999999999999965553 345666543
No 331
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=89.96 E-value=0.74 Score=41.93 Aligned_cols=66 Identities=24% Similarity=0.207 Sum_probs=53.4
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCC
Q 021707 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMF 214 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~ 214 (309)
...+++.+. .......+|.==|.|.++.++++.+|+..+.+++|. |.+++.+++. +|++++.++|.
T Consensus 12 l~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~ 83 (314)
T COG0275 12 LNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFA 83 (314)
T ss_pred HHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHH
Confidence 456677775 556689999999999999999999998766999998 7888887652 68888887664
No 332
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=89.93 E-value=2.6 Score=41.36 Aligned_cols=126 Identities=21% Similarity=0.242 Sum_probs=81.8
Q ss_pred ChhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhcC--CCCCcceEEEecCCccHHHHHHHHhcC----CCceEEEeec-
Q 021707 121 PAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYN--GFKGVKRLVDVGGSAGDCLRMILQKHH----FICEGINFDL- 193 (309)
Q Consensus 121 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~~D~- 193 (309)
..|+.++++|.--..|+++.. ..+.+..+ +-+....|+-+|+|.|-+..+.++.-. .++ ..+++-
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai~-------~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVk-lyavEKN 404 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAIL-------KALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVK-LYAVEKN 404 (649)
T ss_pred hhhhhhhccchHHHHHHHHHH-------HHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceE-EEEEecC
Confidence 356677778877677776653 34444443 112256788999999998887776543 333 566664
Q ss_pred hhHHhhCCC------CCCceEEeCCCCCCC-C-C-CceeeehhhhhcCChhH-HHHHHHHHHHhcCCCcEEE
Q 021707 194 PEVVGEAPS------IPGVTHIGGDMFNSI-P-A-ANAIFMKWVLATWTDDE-CKLIMENCYKALLAGGKLI 255 (309)
Q Consensus 194 p~~~~~a~~------~~ri~~~~~d~~~~~-p-~-~D~i~~~~vlh~~~d~~-~~~iL~~~~~aL~pgG~l~ 255 (309)
|..+-..+. ..||+++..||.+-. | + +|+++ +-.|-.|.|.| ..+.|--+-+-|+|+|.-+
T Consensus 405 PNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~V-SELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 405 PNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIV-SELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred cchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchH-HHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 554443332 288999999998753 3 2 47654 45566666543 5677888889999997443
No 333
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=89.61 E-value=0.81 Score=35.17 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccc--cCceEEcChhchhhhc
Q 021707 16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFR--GERKYSLTEIGKSLVT 76 (309)
Q Consensus 16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~~t~~~~~l~~ 76 (309)
.+++.|..+||+.+ ++++..+.++++.|+..|+|.+..... ..-.+.+|+.+..+..
T Consensus 40 ~~~~~t~~eL~~~l----~~~~stvs~~i~~Le~kg~I~r~~~~~D~R~~~i~lT~~G~~~~~ 98 (109)
T TIGR01889 40 NEGKLTLKEIIKEI----LIKQSALVKIIKKLSKKGYLSKERSEDDERKVIISINKEQRSKIE 98 (109)
T ss_pred cCCcCcHHHHHHHH----CCCHHHHHHHHHHHHHCCCEeccCCcccCCeEEEEECHHHHHHHH
Confidence 45789999999999 999999999999999999999765321 1224778887766554
No 334
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=89.53 E-value=0.54 Score=37.03 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=44.0
Q ss_pred hhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 5 ECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 5 ~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
++..-++++.-.+|..|..|++..+ |++-..+.+.++.|++.|-|...+
T Consensus 12 eLk~rIvElVRe~GRiTi~ql~~~T----GasR~Tvk~~lreLVa~G~l~~~G 60 (127)
T PF06163_consen 12 ELKARIVELVREHGRITIKQLVAKT----GASRNTVKRYLRELVARGDLYRHG 60 (127)
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHH----CCCHHHHHHHHHHHHHcCCeEeCC
Confidence 4556677777788999999999999 999999999999999999999885
No 335
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=89.48 E-value=0.84 Score=36.77 Aligned_cols=56 Identities=25% Similarity=0.299 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhcC
Q 021707 18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVTD 77 (309)
Q Consensus 18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~~ 77 (309)
++.|..|||+.+ ++++..+.++++-|+..|+|++... |...-.+.+|+.|..+...
T Consensus 45 ~~~t~~eLa~~l----~~~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~ 102 (144)
T PRK03573 45 PEQSQIQLAKAI----GIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLISE 102 (144)
T ss_pred CCCCHHHHHHHh----CCChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHHHH
Confidence 468999999999 9999999999999999999998752 2112358899888766653
No 336
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=89.09 E-value=0.76 Score=40.94 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=48.3
Q ss_pred hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhh
Q 021707 10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSL 74 (309)
Q Consensus 10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l 74 (309)
+.-.++.-|++|+.|||+.+ |+|...+..+|+.|...|++...++ .+-+|+.-+....+
T Consensus 21 vY~aLl~~g~~tA~eis~~s----gvP~~kvY~vl~sLe~kG~v~~~~g--~P~~y~av~p~~~i 79 (247)
T COG1378 21 VYLALLCLGEATAKEISEAS----GVPRPKVYDVLRSLEKKGLVEVIEG--RPKKYRAVPPEELI 79 (247)
T ss_pred HHHHHHHhCCccHHHHHHHc----CCCchhHHHHHHHHHHCCCEEeeCC--CCceEEeCCHHHHH
Confidence 34445667999999999999 9999999999999999999998752 26688887755533
No 337
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=88.98 E-value=0.51 Score=35.97 Aligned_cols=45 Identities=11% Similarity=0.128 Sum_probs=39.1
Q ss_pred hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707 8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH 56 (309)
Q Consensus 8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~ 56 (309)
..++..+..++++|..+||+.+ |+++..+.+.++.|...|++...
T Consensus 6 ~~il~~L~~~~~~~~~~la~~l----~~s~~tv~~~l~~L~~~g~i~~~ 50 (108)
T smart00344 6 RKILEELQKDARISLAELAKKV----GLSPSTVHNRVKRLEEEGVIKGY 50 (108)
T ss_pred HHHHHHHHHhCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeece
Confidence 3455556567899999999999 99999999999999999999854
No 338
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=88.97 E-value=0.69 Score=32.29 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHhCcCCC--CCcchHHHHHHHHHcCCceeeecccccCceEEcChhchh
Q 021707 16 ANTPLSVSQILTCILPSGG--GDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKS 73 (309)
Q Consensus 16 ~~~~~t~~eLA~~~~~~~g--~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~ 73 (309)
.++|++..+|++.+ ...| +++..++|-|++|...|++.+.+ ...+.+|+.+..
T Consensus 10 ~~~P~g~~~l~~~L-~~~g~~~se~avRrrLr~me~~Glt~~~g----~~G~~iT~~G~~ 64 (66)
T PF08461_consen 10 SDKPLGRKQLAEEL-KLRGEELSEEAVRRRLRAMERDGLTRKVG----RQGRIITEKGLD 64 (66)
T ss_pred cCCCCCHHHHHHHH-HhcChhhhHHHHHHHHHHHHHCCCccccC----CcccccCHHHHh
Confidence 46899999999998 2223 34589999999999999888664 445678877643
No 339
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=88.95 E-value=0.51 Score=27.94 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=26.1
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCce
Q 021707 19 PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVF 53 (309)
Q Consensus 19 ~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll 53 (309)
|+|-.|||..+ |+...-+.|.|.-|...|++
T Consensus 2 ~mtr~diA~~l----G~t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYL----GLTRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHH----TS-HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHh----CCcHHHHHHHHHHHHHcCCC
Confidence 47889999999 99999999999999999875
No 340
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=88.85 E-value=4.6 Score=37.66 Aligned_cols=103 Identities=17% Similarity=0.068 Sum_probs=72.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeC-CCCCC-CCC--Cceeeeh
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGG-DMFNS-IPA--ANAIFMK 226 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~-d~~~~-~p~--~D~i~~~ 226 (309)
...+..|+|==||||.++++..-- +++ +++.|. ..++..++.+ ..+.+..+ |+... +++ .|.|.+=
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~-viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatD 271 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GAR-VIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATD 271 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--Cce-EeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEec
Confidence 445679999999999999987744 677 999999 5688888765 34444444 77653 655 4777641
Q ss_pred ------hhhhcCC-hhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 227 ------WVLATWT-DDECKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 227 ------~vlh~~~-d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
....--. ++-..++|..+.++|++||++++.-+..+.
T Consensus 272 PPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~ 315 (347)
T COG1041 272 PPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPR 315 (347)
T ss_pred CCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcch
Confidence 1111111 344678999999999999999988774333
No 341
>PRK10870 transcriptional repressor MprA; Provisional
Probab=88.69 E-value=0.93 Score=38.14 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=46.5
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc--ccCceEEcChhchhhhcC
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF--RGERKYSLTEIGKSLVTD 77 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~~t~~~~~l~~~ 77 (309)
++++|..|||+.+ +++...+.+++.-|...|+|++.... ...-.+.+|+.|..+...
T Consensus 69 ~~~it~~eLa~~l----~l~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~~~ 127 (176)
T PRK10870 69 NHSIQPSELSCAL----GSSRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFLRE 127 (176)
T ss_pred CCCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHH
Confidence 4678999999999 99999999999999999999986521 112358899988776654
No 342
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=88.56 E-value=0.91 Score=32.06 Aligned_cols=44 Identities=25% Similarity=0.380 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChh
Q 021707 18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEI 70 (309)
Q Consensus 18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~ 70 (309)
-+.|.++||..+ |++...+.+.|+.|...|+++... +.+.+...
T Consensus 27 ~~lt~~~iA~~~----g~sr~tv~r~l~~l~~~g~I~~~~-----~~i~I~d~ 70 (76)
T PF13545_consen 27 LPLTQEEIADML----GVSRETVSRILKRLKDEGIIEVKR-----GKIIILDP 70 (76)
T ss_dssp EESSHHHHHHHH----TSCHHHHHHHHHHHHHTTSEEEET-----TEEEESSH
T ss_pred ecCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEEcC-----CEEEECCH
Confidence 378999999999 999999999999999999999874 56766543
No 343
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=88.46 E-value=0.92 Score=29.99 Aligned_cols=39 Identities=15% Similarity=0.361 Sum_probs=31.9
Q ss_pred hhhhhc-CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCc
Q 021707 10 RKKVRL-ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGV 52 (309)
Q Consensus 10 ~~~~~l-~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gl 52 (309)
++..++ .+++.|.++||+.+ +++.+.+++-+..|...|+
T Consensus 5 il~~L~~~~~~it~~eLa~~l----~vS~rTi~~~i~~L~~~~~ 44 (55)
T PF08279_consen 5 ILKLLLESKEPITAKELAEEL----GVSRRTIRRDIKELREWGI 44 (55)
T ss_dssp HHHHHHHTTTSBEHHHHHHHC----TS-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHcCCCcCHHHHHHHh----CCCHHHHHHHHHHHHHCCC
Confidence 344453 45679999999999 9999999999999999993
No 344
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.32 E-value=3.2 Score=38.01 Aligned_cols=104 Identities=18% Similarity=0.234 Sum_probs=76.4
Q ss_pred CCcceEEEecCCccHHHHHHHHhc--CCCceEEEeechhHHhhCC----CC------------------------CCceE
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQKH--HFICEGINFDLPEVVGEAP----SI------------------------PGVTH 208 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~~D~p~~~~~a~----~~------------------------~ri~~ 208 (309)
.+...|+-+|||.-.....++..+ +.++ .+=+|.|.+++..- +. ++...
T Consensus 86 ~~~~qivnLGcG~D~l~frL~s~~~~~~~~-fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 86 DGKKQIVNLGAGFDTLYFRLLSSGELDRVK-FIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred CCceEEEEcCCCccchhhhhhccCCCCcce-EEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 456789999999999999999998 7778 89999988776432 10 35566
Q ss_pred EeCCCCCC------CCC----C---ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 209 IGGDMFNS------IPA----A---NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 209 ~~~d~~~~------~p~----~---D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
+..|..+. +.. . -+++.=-+|-+.+++++..+++.+.+... .+.+++.|.+.+.+
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~-~a~fv~YEQi~~~D 232 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFE-NAHFVNYEQINPND 232 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCC-cccEEEEeccCCCC
Confidence 66666522 111 1 12334467788899999999999988765 66799999999766
No 345
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=87.92 E-value=0.97 Score=36.57 Aligned_cols=46 Identities=11% Similarity=0.252 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCc--eEEcC
Q 021707 16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGER--KYSLT 68 (309)
Q Consensus 16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~--~y~~t 68 (309)
.+|+.|++|||-+. |++.+.+.--|..+++-|-+.+..+ +| +|.++
T Consensus 3 q~Ga~T~eELA~~F----GvttRkvaStLa~~ta~Grl~Rv~q---~gkfRy~iP 50 (155)
T PF07789_consen 3 QEGAKTAEELAGKF----GVTTRKVASTLAMVTATGRLIRVNQ---NGKFRYCIP 50 (155)
T ss_pred ccCcccHHHHHHHh----CcchhhhHHHHHHHHhcceeEEecC---CCceEEeCC
Confidence 36899999999999 9999999999999999999988764 44 46664
No 346
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=87.22 E-value=2.8 Score=37.07 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=50.4
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-----CCCceEEeCCCCCCCCC-----Cceeeehhhh
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-----IPGVTHIGGDMFNSIPA-----ANAIFMKWVL 229 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-----~~ri~~~~~d~~~~~p~-----~D~i~~~~vl 229 (309)
+.+|+=|| -.-..+++++-.++..+ ++++|+ +.+++..++ .-+|+.+..|+..++|+ +|++++--.
T Consensus 45 gk~il~lG-DDDLtSlA~al~~~~~~-I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 45 GKRILFLG-DDDLTSLALALTGLPKR-ITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp T-EEEEES--TT-HHHHHHHHT--SE-EEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred CCEEEEEc-CCcHHHHHHHhhCCCCe-EEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 57899998 44556666666677777 999999 445554432 23499999999999875 399887532
Q ss_pred hcCChhHHHHHHHHHHHhcCCCc
Q 021707 230 ATWTDDECKLIMENCYKALLAGG 252 (309)
Q Consensus 230 h~~~d~~~~~iL~~~~~aL~pgG 252 (309)
++.+-..-.|.+..++|+..|
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT
T ss_pred --CCHHHHHHHHHHHHHHhCCCC
Confidence 344667788999999998544
No 347
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=86.98 E-value=2 Score=37.69 Aligned_cols=95 Identities=23% Similarity=0.341 Sum_probs=64.2
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcCC-Cc----e---EEEeechhHHhhCCCCCCceEEeCCCCCC---------CCC-
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHHF-IC----E---GINFDLPEVVGEAPSIPGVTHIGGDMFNS---------IPA- 219 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~----~---~~~~D~p~~~~~a~~~~ri~~~~~d~~~~---------~p~- 219 (309)
+.+..++||+..-.|.++.-+.++.-+ +. + ++.+|+..|.. .+.|..+.+|+.+. +..
T Consensus 39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~Ii~hfgge 114 (294)
T KOG1099|consen 39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEAIIEHFGGE 114 (294)
T ss_pred HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHHHHHHhCCC
Confidence 456689999999999999888876422 11 1 78888865532 46778888898764 222
Q ss_pred -Cceeeeh-----hhhhcCChhHHHHH----HHHHHHhcCCCcEEEE
Q 021707 220 -ANAIFMK-----WVLATWTDDECKLI----MENCYKALLAGGKLIA 256 (309)
Q Consensus 220 -~D~i~~~-----~vlh~~~d~~~~~i----L~~~~~aL~pgG~l~i 256 (309)
+|+|++- .-+|++++=-..++ |+-...+|+|||.++.
T Consensus 115 kAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 115 KADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred CccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 5999973 45787765322333 3444677899998763
No 348
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=86.95 E-value=1 Score=32.51 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=37.4
Q ss_pred hhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 12 KVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 12 ~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
+.+-.+|.+++.+||..+ +.+++.++-+|..++..|-+++..
T Consensus 9 d~l~~~gr~s~~~Ls~~~----~~p~~~VeaMLe~l~~kGkverv~ 50 (78)
T PRK15431 9 DLLALRGRMEAAQISQTL----NTPQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_pred HHHHHcCcccHHHHHHHH----CcCHHHHHHHHHHHHHCCCeEeec
Confidence 334457899999999999 999999999999999999999874
No 349
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=86.94 E-value=1.1 Score=43.95 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=53.4
Q ss_pred hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcCCCC
Q 021707 8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEG 80 (309)
Q Consensus 8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~~~~ 80 (309)
..+...+-..++.|..+||+.+ ++++..+.++++.|.+.|+|+.... ....|.+|+.|+.++....|
T Consensus 9 ~~vL~~L~~~~~~s~~eLA~~l----~l~~~tVt~~i~~Le~kGlV~~~~~--~~~~i~LTeeG~~~~~~g~p 75 (489)
T PRK04172 9 KKVLKALKELKEATLEELAEKL----GLPPEAVMRAAEWLEEKGLVKVEER--VEEVYVLTEEGKKYAEEGLP 75 (489)
T ss_pred HHHHHHHHhCCCCCHHHHHHHh----CcCHHHHHHHHHHHHhCCCEEEEee--eEEEEEECHHHHHHHHhcCH
Confidence 3444444456789999999999 9999999999999999999997641 13579999999877765443
No 350
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=86.85 E-value=1.1 Score=39.30 Aligned_cols=59 Identities=12% Similarity=0.258 Sum_probs=49.7
Q ss_pred hhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcC
Q 021707 11 KKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTD 77 (309)
Q Consensus 11 ~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~ 77 (309)
++.....+.....|||..+ |+.+..+..-++-|+..|++++.+ .+.|..|..+..++..
T Consensus 17 ~ei~~~qp~v~q~eIA~~l----giT~QaVsehiK~Lv~eG~i~~~g----R~~Y~iTkkG~e~l~~ 75 (260)
T COG1497 17 SEIAVRQPRVKQKEIAKKL----GITLQAVSEHIKELVKEGLIEKEG----RGEYEITKKGAEWLLE 75 (260)
T ss_pred HHHHHhCCCCCHHHHHHHc----CCCHHHHHHHHHHHHhccceeecC----CeeEEEehhHHHHHHH
Confidence 3444445678999999999 999999999999999999999975 6799999999665543
No 351
>PHA02943 hypothetical protein; Provisional
Probab=86.85 E-value=1.3 Score=36.19 Aligned_cols=43 Identities=16% Similarity=0.110 Sum_probs=38.4
Q ss_pred hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
+.+.+ +.|..|..|||+.+ |++-..++..|..|...|.|.+..
T Consensus 16 ILE~L-k~G~~TtseIAkaL----GlS~~qa~~~LyvLErEG~VkrV~ 58 (165)
T PHA02943 16 TLRLL-ADGCKTTSRIANKL----GVSHSMARNALYQLAKEGMVLKVE 58 (165)
T ss_pred HHHHH-hcCCccHHHHHHHH----CCCHHHHHHHHHHHHHcCceEEEe
Confidence 34444 78999999999999 999999999999999999999876
No 352
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=86.85 E-value=0.94 Score=31.53 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=30.4
Q ss_pred CCCHHHHHHHhCcCCCCC-cchHHHHHHHHHcCCceeeec
Q 021707 19 PLSVSQILTCILPSGGGD-AENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 19 ~~t~~eLA~~~~~~~g~~-~~~l~rlL~~L~~~gll~~~~ 57 (309)
|-|+.|||+.+ |++ +..+.+.|++|...|++....
T Consensus 25 ~Pt~rEIa~~~----g~~S~~tv~~~L~~Le~kG~I~r~~ 60 (65)
T PF01726_consen 25 PPTVREIAEAL----GLKSTSTVQRHLKALERKGYIRRDP 60 (65)
T ss_dssp ---HHHHHHHH----TSSSHHHHHHHHHHHHHTTSEEEGC
T ss_pred CCCHHHHHHHh----CCCChHHHHHHHHHHHHCcCccCCC
Confidence 77999999999 998 899999999999999999874
No 353
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=86.48 E-value=2.9 Score=40.60 Aligned_cols=102 Identities=18% Similarity=0.251 Sum_probs=72.9
Q ss_pred eEEEecCCccHHHHHHHHhcCCCceEEEeechhH-HhhC-----CCCCCceEEeCCCCCC-CCC--CceeeehhhhhcCC
Q 021707 163 RLVDVGGSAGDCLRMILQKHHFICEGINFDLPEV-VGEA-----PSIPGVTHIGGDMFNS-IPA--ANAIFMKWVLATWT 233 (309)
Q Consensus 163 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~-~~~a-----~~~~ri~~~~~d~~~~-~p~--~D~i~~~~vlh~~~ 233 (309)
+++-+|||.-.+...+-+.. .-. ++.+|.+++ ++.. ++.+-..+...|+... ++. .|+++....++.+-
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G-~~d-I~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG-FED-ITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC-CCC-ceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 89999999998887766543 123 778888543 3322 3346788999999876 664 49999999998753
Q ss_pred -hh-------HHHHHHHHHHHhcCCCcEEEEeccc--cCCCCC
Q 021707 234 -DD-------ECKLIMENCYKALLAGGKLIACEPV--LLDDSN 266 (309)
Q Consensus 234 -d~-------~~~~iL~~~~~aL~pgG~l~i~e~~--~~~~~~ 266 (309)
++ .+-..+..+.+.|+|||+.+.+-.. .|..++
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~r~ 171 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLVQVVPQGRK 171 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEeeeeccCCCC
Confidence 22 3445689999999999999988774 555443
No 354
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=86.30 E-value=1.4 Score=36.86 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhch
Q 021707 18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGK 72 (309)
Q Consensus 18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~ 72 (309)
+..+.++||+++.| ++++..++.-|+.|..+|++++++ +|.|..|..+-
T Consensus 38 ~~~d~~~iak~l~p--~is~~ev~~sL~~L~~~gli~k~~----~g~y~~t~~~l 86 (171)
T PF14394_consen 38 FAPDPEWIAKRLRP--KISAEEVRDSLEFLEKLGLIKKDG----DGKYVQTDKSL 86 (171)
T ss_pred CCCCHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCeEECC----CCcEEEeccee
Confidence 34499999999966 899999999999999999999997 78999997553
No 355
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=86.17 E-value=1.7 Score=33.56 Aligned_cols=61 Identities=21% Similarity=0.230 Sum_probs=42.8
Q ss_pred hhhhhhhcC-CCCCCHHHHHHHhCcCC-CCCcchHHHHHHHHHcCCceeeecccccCceEEcC
Q 021707 8 DGRKKVRLA-NTPLSVSQILTCILPSG-GGDAENLQCILRLLTSYGVFSEHREFRGERKYSLT 68 (309)
Q Consensus 8 ~g~~~~~l~-~~~~t~~eLA~~~~~~~-g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t 68 (309)
..+++.+.. +++.|++||.+.+.... +++...+.|.|+.|+..|++.+...+.+...|.++
T Consensus 4 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~~~~~~~~y~~~ 66 (116)
T cd07153 4 LAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIELGDGKARYELN 66 (116)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEEeCCCceEEEeC
Confidence 445665554 57899999999982211 46778999999999999999987532112356554
No 356
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=85.80 E-value=0.39 Score=37.05 Aligned_cols=37 Identities=30% Similarity=0.587 Sum_probs=28.6
Q ss_pred ceeeeh----hhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707 221 NAIFMK----WVLATWTDDECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 221 D~i~~~----~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
|+|++. |+=-+|.|+-..++++++++.|+|||.+++-
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 666653 3333678999999999999999999976654
No 357
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=85.48 E-value=1.7 Score=32.40 Aligned_cols=54 Identities=33% Similarity=0.457 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHH----------HHHcCCce-eeecccccCceEEcChhchhhh
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILR----------LLTSYGVF-SEHREFRGERKYSLTEIGKSLV 75 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~----------~L~~~gll-~~~~~~~~~~~y~~t~~~~~l~ 75 (309)
..+.+..|||..+ +.++..+..-|+ .|+.+|+| .+.... +.-.|++|+.+..++
T Consensus 23 p~~~~~~eIar~v----~~~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~-g~k~Y~lT~~G~~~~ 87 (90)
T PF07381_consen 23 PEPAYPSEIARSV----GSDYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKG-GFKYYRLTEKGKRIA 87 (90)
T ss_pred CCcCCHHHHHHHH----CCCHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecC-CeeEEEeChhhhhHH
Confidence 4688999999999 999988888885 58999999 333211 234799999886554
No 358
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=85.48 E-value=3.4 Score=40.78 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=60.7
Q ss_pred CcceEEEecCC-ccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCC-----------------------
Q 021707 160 GVKRLVDVGGS-AGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMF----------------------- 214 (309)
Q Consensus 160 ~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~----------------------- 214 (309)
.+.+|+-+|+| .|..++..++.. +.+ ++++|. ++..+.+++. ..+++..|..
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l-GA~-V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL-GAI-VRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 46899999998 677888888776 457 999998 6677776654 2222211110
Q ss_pred --CC-CCCCceeeehhhhhcCChhHHHHH-HHHHHHhcCCCcEEEEecc
Q 021707 215 --NS-IPAANAIFMKWVLATWTDDECKLI-MENCYKALLAGGKLIACEP 259 (309)
Q Consensus 215 --~~-~p~~D~i~~~~vlh~~~d~~~~~i-L~~~~~aL~pgG~l~i~e~ 259 (309)
.. ...+|+++..--. +...+..+ .++..+.|+|||+++.+-.
T Consensus 241 ~~~~~~~gaDVVIetag~---pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALI---PGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCC---CcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 00 1235888765432 33223345 5999999999999887643
No 359
>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication. ; GO: 0006260 DNA replication, 0006276 plasmid maintenance
Probab=85.42 E-value=1.3 Score=37.03 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=40.3
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChh
Q 021707 19 PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEI 70 (309)
Q Consensus 19 ~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~ 70 (309)
-+|..+||+.+ |++...+.|.+..|...+++.+.. .|.|.++|.
T Consensus 75 ~~t~~~ia~~l----~iS~~Tv~r~ik~L~e~~iI~k~~----~G~Y~iNP~ 118 (165)
T PF05732_consen 75 VATQKEIAEKL----GISKPTVSRAIKELEEKNIIKKIR----NGAYMINPN 118 (165)
T ss_pred EeeHHHHHHHh----CCCHHHHHHHHHHHHhCCcEEEcc----CCeEEECcH
Confidence 35899999999 999999999999999999999886 789999984
No 360
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=85.08 E-value=0.82 Score=31.49 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=36.3
Q ss_pred hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707 9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH 56 (309)
Q Consensus 9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~ 56 (309)
.+++.++..|+.|..+|.+.+ +++++.++.-|-.|...+++...
T Consensus 17 ~V~~~Ll~~G~ltl~~i~~~t----~l~~~~Vk~~L~~LiQh~~v~y~ 60 (62)
T PF08221_consen 17 KVGEVLLSRGRLTLREIVRRT----GLSPKQVKKALVVLIQHNLVQYF 60 (62)
T ss_dssp HHHHHHHHC-SEEHHHHHHHH----T--HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCcCHHHHHHHh----CCCHHHHHHHHHHHHHcCCeeee
Confidence 356667788999999999999 99999999999999999998754
No 361
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=84.52 E-value=0.53 Score=35.94 Aligned_cols=44 Identities=20% Similarity=0.187 Sum_probs=33.5
Q ss_pred hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
+++.++.++.++-++||+.+ |+++..++++|..|...|++....
T Consensus 18 Il~~L~~~~~l~de~la~~~----~l~~~~vRkiL~~L~~~~lv~~~~ 61 (105)
T PF02002_consen 18 ILDALLRKGELTDEDLAKKL----GLKPKEVRKILYKLYEDGLVSYRR 61 (105)
T ss_dssp HHHHHHHH--B-HHHHHHTT-----S-HHHHHHHHHHHHHHSS-EEEE
T ss_pred HHHHHHHcCCcCHHHHHHHh----CCCHHHHHHHHHHHHHCCCeEEEE
Confidence 46666667899999999999 999999999999999999997664
No 362
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=84.23 E-value=1.7 Score=35.48 Aligned_cols=95 Identities=19% Similarity=0.213 Sum_probs=46.8
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeec-----hhHHhhCCCCCCceEEeCCCCCCCCC-----Cceeeehhhhh
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-----PEVVGEAPSIPGVTHIGGDMFNSIPA-----ANAIFMKWVLA 230 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-----p~~~~~a~~~~ri~~~~~d~~~~~p~-----~D~i~~~~vlh 230 (309)
..-|+|+|=|.|..=--+.+.+|+-+ +.++|. |+.+. +.=.++-||+.+..|. ..+.+...=+-
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~-I~vfDR~l~~hp~~~P-----~~~~~ilGdi~~tl~~~~~~g~~a~laHaD~G 102 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRR-IYVFDRALACHPSSTP-----PEEDLILGDIRETLPALARFGAGAALAHADIG 102 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS--EEEEESS--S-GGG--------GGGEEES-HHHHHHHHHHH-S-EEEEEE---
T ss_pred CCceEEeccCCCccHHHHHHhCCCCe-EEEEeeecccCCCCCC-----chHheeeccHHHHhHHHHhcCCceEEEEeecC
Confidence 36899999999999999999999999 999998 33322 2235566666543221 12222222221
Q ss_pred cCChhHHHHHH----HHHHHhcCCCcEEEEecccc
Q 021707 231 TWTDDECKLIM----ENCYKALLAGGKLIACEPVL 261 (309)
Q Consensus 231 ~~~d~~~~~iL----~~~~~aL~pgG~l~i~e~~~ 261 (309)
.-..++..... --+...|.|||.++-..++.
T Consensus 103 ~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 103 TGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp -S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred CCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 11222222223 33456678999777665554
No 363
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=84.22 E-value=1.6 Score=41.98 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=39.3
Q ss_pred CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707 16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE 69 (309)
Q Consensus 16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~ 69 (309)
.+.|.|.+||++.+ +++++.++++|+.|...|++.+.+ ++.|.+..
T Consensus 307 ~g~~~t~~~La~~l----~~~~~~v~~iL~~L~~agLI~~~~----~g~~~l~r 352 (412)
T PRK04214 307 HGKALDVDEIRRLE----PMGYDELGELLCELARIGLLRRGE----RGQWVLAR 352 (412)
T ss_pred cCCCCCHHHHHHHh----CCCHHHHHHHHHHHHhCCCeEecC----CCceEecC
Confidence 35689999999999 999999999999999999998764 45676553
No 364
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=83.93 E-value=8.8 Score=36.18 Aligned_cols=99 Identities=18% Similarity=0.072 Sum_probs=61.7
Q ss_pred CCCcceEEEecCCc-cHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeC---C-CCCC----CCC--Cceeee
Q 021707 158 FKGVKRLVDVGGSA-GDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGG---D-MFNS----IPA--ANAIFM 225 (309)
Q Consensus 158 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~---d-~~~~----~p~--~D~i~~ 225 (309)
.....+|+.+|+|. |..+..+++...-.+ +++++. ++..+.+++...+.++.. + +.+. .+. .|+++-
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~-vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld 260 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAER-VIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCID 260 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCE-EEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEE
Confidence 55668899999987 889999999886445 778776 556665554322233221 1 1111 121 366653
Q ss_pred h---------------hhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707 226 K---------------WVLATWTDDECKLIMENCYKALLAGGKLIACEP 259 (309)
Q Consensus 226 ~---------------~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~ 259 (309)
. ++|+..++. ...+.++.+.|+|+|++++...
T Consensus 261 ~vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 261 AVGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCCcccccccccccccccccccCc--hHHHHHHHHHhccCCEEEEEcC
Confidence 2 222322333 4678889999999999999854
No 365
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=83.63 E-value=6.2 Score=32.86 Aligned_cols=95 Identities=13% Similarity=0.050 Sum_probs=58.8
Q ss_pred EecCCccHHHHHHHHhcC---CCceEEEeechhHHh-hCCC---------CCCceEEe-CCCCCC---C--CC--Cceee
Q 021707 166 DVGGSAGDCLRMILQKHH---FICEGINFDLPEVVG-EAPS---------IPGVTHIG-GDMFNS---I--PA--ANAIF 224 (309)
Q Consensus 166 DvG~G~G~~~~~l~~~~p---~~~~~~~~D~p~~~~-~a~~---------~~ri~~~~-~d~~~~---~--p~--~D~i~ 224 (309)
=||=|.-.|+.+|++++. ++. ++.+|-.+.+. .-.. ..+++++. .|..+. . .. .|.|+
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~-ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLV-ATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEE-EeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEE
Confidence 378888999999999987 344 78888743332 2221 23444443 355432 2 12 48888
Q ss_pred ehhhhhcCC-----------hhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707 225 MKWVLATWT-----------DDECKLIMENCYKALLAGGKLIACEPVL 261 (309)
Q Consensus 225 ~~~vlh~~~-----------d~~~~~iL~~~~~aL~pgG~l~i~e~~~ 261 (309)
.++--.-.. ..-....++.+.+.|+++|.|.|.=.--
T Consensus 81 FNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 81 FNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred EeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 776543211 1224567888899999999999875443
No 366
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=83.38 E-value=2.7 Score=31.39 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=35.5
Q ss_pred CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
.-+|-.+.-+|..+ +++...+...++-|..+|++++..
T Consensus 18 ~~~~Dy~k~ia~~l----~~~~~~v~~~l~~Le~~GLler~~ 55 (92)
T PF10007_consen 18 KAGPDYAKSIARRL----KIPLEEVREALEKLEEMGLLERVE 55 (92)
T ss_pred HHCCCcHHHHHHHH----CCCHHHHHHHHHHHHHCCCeEEec
Confidence 45888999999999 999999999999999999999986
No 367
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=83.33 E-value=2.1 Score=29.36 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=31.8
Q ss_pred CCC-CHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 18 TPL-SVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 18 ~~~-t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
..+ |..+||+.. |++...+++.|+.|.+.|+++...
T Consensus 22 ~~lps~~~la~~~----~vsr~tvr~al~~L~~~g~i~~~~ 58 (64)
T PF00392_consen 22 DRLPSERELAERY----GVSRTTVREALRRLEAEGLIERRP 58 (64)
T ss_dssp SBE--HHHHHHHH----TS-HHHHHHHHHHHHHTTSEEEET
T ss_pred CEeCCHHHHHHHh----ccCCcHHHHHHHHHHHCCcEEEEC
Confidence 467 999999999 999999999999999999998875
No 368
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=83.04 E-value=1.9 Score=38.41 Aligned_cols=46 Identities=11% Similarity=0.077 Sum_probs=40.3
Q ss_pred hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
.-+.+.+..++..++.|||+.+ |+++.-++|-|+.|...|++.+..
T Consensus 8 ~~Il~~l~~~~~~~~~ela~~l----~vS~~TirRdL~~Le~~g~i~r~~ 53 (251)
T PRK13509 8 QILLELLAQLGFVTVEKVIERL----GISPATARRDINKLDESGKLKKVR 53 (251)
T ss_pred HHHHHHHHHcCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEec
Confidence 3355556667899999999999 999999999999999999998875
No 369
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=82.95 E-value=4.8 Score=35.66 Aligned_cols=103 Identities=16% Similarity=0.207 Sum_probs=69.8
Q ss_pred CCCcceEEEecCCccHHHHHHHHh-cCCCceEEEeec-----hhHHhhCCCCCCceEEeCCCCCCCC-----C-Cceeee
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQK-HHFICEGINFDL-----PEVVGEAPSIPGVTHIGGDMFNSIP-----A-ANAIFM 225 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-----p~~~~~a~~~~ri~~~~~d~~~~~p-----~-~D~i~~ 225 (309)
.+...+||-+|.++|+....+... .|+-- +..++. -..+..|++..+|--+..|...+.. . .|+||.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~-VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGC-VYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCce-EEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec
Confidence 356789999999999987776654 35545 566666 3678888888999888889987733 1 277664
Q ss_pred hhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707 226 KWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS 265 (309)
Q Consensus 226 ~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~ 265 (309)
--. +++++.-+.-++.--|++||.++|.=-...-++
T Consensus 233 Dva----qpdq~RivaLNA~~FLk~gGhfvisikancids 268 (317)
T KOG1596|consen 233 DVA----QPDQARIVALNAQYFLKNGGHFVISIKANCIDS 268 (317)
T ss_pred cCC----CchhhhhhhhhhhhhhccCCeEEEEEecccccc
Confidence 322 223344445567778899998887644433333
No 370
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=82.49 E-value=2.8 Score=33.01 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHhCcCCC-CCcchHHHHHHHHHcCCceeeeccc-c-cCceEEcChhchhhhc
Q 021707 16 ANTPLSVSQILTCILPSGG-GDAENLQCILRLLTSYGVFSEHREF-R-GERKYSLTEIGKSLVT 76 (309)
Q Consensus 16 ~~~~~t~~eLA~~~~~~~g-~~~~~l~rlL~~L~~~gll~~~~~~-~-~~~~y~~t~~~~~l~~ 76 (309)
.+|+.-..||-..+ + +++.-|.+-|+.|...|++.+..-. + ..-.|++|+.+..|..
T Consensus 33 ~~g~~RF~eL~r~i----~~Is~k~Ls~~Lk~Le~~Glv~R~~~~~~PprveY~LT~~G~~L~~ 92 (120)
T COG1733 33 FDGPKRFNELRRSI----GGISPKMLSRRLKELEEDGLVERVVYPEEPPRVEYRLTEKGRDLLP 92 (120)
T ss_pred hcCCCcHHHHHHHc----cccCHHHHHHHHHHHHHCCCEEeeecCCCCceeEEEEhhhHHHHHH
Confidence 35999999999999 5 9999999999999999999987521 1 0236999998876654
No 371
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=82.39 E-value=1.6 Score=39.09 Aligned_cols=72 Identities=13% Similarity=0.134 Sum_probs=42.2
Q ss_pred HHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCCCCCCceeeehhhhhcCChhHHHHHHHHHHHhcCCCc
Q 021707 174 CLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGG 252 (309)
Q Consensus 174 ~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~~p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG 252 (309)
++.+|.++.++.+ +++.|. +..+..+.+..-+.-...+ .+....+|+|++.- |.....++|+++...+++|.
T Consensus 1 ~A~aL~~~g~~~~-v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~~~ 73 (258)
T PF02153_consen 1 IALALRKAGPDVE-VYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKPGA 73 (258)
T ss_dssp HHHHHHHTTTTSE-EEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-TTS
T ss_pred ChHHHHhCCCCeE-EEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCCCc
Confidence 4678889999999 999998 5666666444333333322 12244568888765 33445566666666555554
No 372
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=82.23 E-value=1.7 Score=38.77 Aligned_cols=99 Identities=21% Similarity=0.161 Sum_probs=55.9
Q ss_pred cceEEEecCCccHHHHH---HHHhc--CCCceEEEeec----hhHHhh---------------------------CCC--
Q 021707 161 VKRLVDVGGSAGDCLRM---ILQKH--HFICEGINFDL----PEVVGE---------------------------APS-- 202 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~---l~~~~--p~~~~~~~~D~----p~~~~~---------------------------a~~-- 202 (309)
+.-|+++|+-.|..++. +++.+ ++-+ +.++|. |+.-.. ..+
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~-i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRR-IYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS---EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCE-EEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 57899999988876654 44444 3445 899995 322110 000
Q ss_pred --CCCceEEeCCCCCCCCCC--ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707 203 --IPGVTHIGGDMFNSIPAA--NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL 261 (309)
Q Consensus 203 --~~ri~~~~~d~~~~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~ 261 (309)
.++++++.|.+.+-+|.. +-|-+-++=-|+-+. ....|..++..|.|||.|++-|-..
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYes-T~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYES-TKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHH-HHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEeccchHH-HHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 157999999985545542 222222222244444 3689999999999999888888666
No 373
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=82.21 E-value=2.4 Score=41.35 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=51.6
Q ss_pred hhhhhcCCCC-CCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcCCCC
Q 021707 10 RKKVRLANTP-LSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEG 80 (309)
Q Consensus 10 ~~~~~l~~~~-~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~~~~ 80 (309)
+.+.+...++ .+.++||+.+ |++...+.+.+..|.+.|+++..... ...|.+|+.++..+.+.+|
T Consensus 8 iL~~l~~~~~~~~~~~la~~~----g~~~~~v~~~~~~L~~kg~v~~~~~~--~~~~~LT~eG~~~l~~G~P 73 (492)
T PLN02853 8 LLGALSNNEEISDSGQFAASH----GLDHNEVVGVIKSLHGFRYVDAQDIK--RETWVLTEEGKKYAAEGSP 73 (492)
T ss_pred HHHHHHhcCCCCCHHHHHHHc----CCCHHHHHHHHHHHHhCCCEEEEEEE--EEEEEECHHHHHHHHcCCH
Confidence 3444434454 8999999999 99999999999999999999876522 4689999999877766554
No 374
>PRK10742 putative methyltransferase; Provisional
Probab=82.19 E-value=2.1 Score=38.08 Aligned_cols=109 Identities=13% Similarity=0.121 Sum_probs=72.1
Q ss_pred HHHHhhcCCCCCcc--eEEEecCCccHHHHHHHHhcCCCceEEEeechhHH--------hhCC------C--CCCceEEe
Q 021707 149 TSVLDSYNGFKGVK--RLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVV--------GEAP------S--IPGVTHIG 210 (309)
Q Consensus 149 ~~~~~~~~~~~~~~--~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~--------~~a~------~--~~ri~~~~ 210 (309)
+.+++++. +.++. +|||.=+|.|..+..++.+ +++ ++.+|...++ +.+. . ..|++++.
T Consensus 76 ~~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 76 EAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred cHHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 45677774 55544 9999999999999999988 777 9999983322 2221 1 15788999
Q ss_pred CCCCCC---CCC-Cceeee----------------hhhhhcC--ChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 211 GDMFNS---IPA-ANAIFM----------------KWVLATW--TDDECKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 211 ~d~~~~---~p~-~D~i~~----------------~~vlh~~--~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
+|..+. .+. .|+|++ ..++|.+ .+.+..++|+.+.++-+ -++++-++...+
T Consensus 152 ~da~~~L~~~~~~fDVVYlDPMfp~~~ksa~vkk~mr~~~~l~g~d~d~~~lL~~Al~~A~--kRVVVKrp~~a~ 224 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLAT--KRVVVKRPDYAP 224 (250)
T ss_pred CcHHHHHhhCCCCCcEEEECCCCCCCccccchhhhHHHHHHhcCCCCChHHHHHHHHHhcC--ceEEEecCCCCC
Confidence 887653 233 488774 1223332 24456788888877755 678887765544
No 375
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=82.16 E-value=1.7 Score=37.08 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHhCcCCCCC-cchHHHHHHHHHcCCceeeec
Q 021707 18 TPLSVSQILTCILPSGGGD-AENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 18 ~~~t~~eLA~~~~~~~g~~-~~~l~rlL~~L~~~gll~~~~ 57 (309)
-+.|..|||+.+ |++ +..+.+.|+.|...|+++...
T Consensus 24 ~~~~~~ela~~~----~~~s~~tv~~~l~~L~~~g~i~~~~ 60 (199)
T TIGR00498 24 YPPSIREIARAV----GLRSPSAAEEHLKALERKGYIERDP 60 (199)
T ss_pred CCCcHHHHHHHh----CCCChHHHHHHHHHHHHCCCEecCC
Confidence 378999999999 999 899999999999999999884
No 376
>PF13730 HTH_36: Helix-turn-helix domain
Probab=81.94 E-value=1.8 Score=28.59 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=27.8
Q ss_pred CHHHHHHHhCcCCCCCcchHHHHHHHHHcCCce
Q 021707 21 SVSQILTCILPSGGGDAENLQCILRLLTSYGVF 53 (309)
Q Consensus 21 t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll 53 (309)
|.+.||+.+ |++.+.+.+.+..|+..|++
T Consensus 27 S~~~la~~~----g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDL----GVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHH----CcCHHHHHHHHHHHHHCcCC
Confidence 899999999 99999999999999999985
No 377
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=81.79 E-value=3 Score=38.88 Aligned_cols=93 Identities=20% Similarity=0.126 Sum_probs=63.6
Q ss_pred CCCcceEEEecC-CccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCC---CCCCCCC-Cceeeehhhhhc
Q 021707 158 FKGVKRLVDVGG-SAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGD---MFNSIPA-ANAIFMKWVLAT 231 (309)
Q Consensus 158 ~~~~~~vlDvG~-G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d---~~~~~p~-~D~i~~~~vlh~ 231 (309)
.....+|+=+|. |.|+++..+++..- .+ ++++|. ++-.+.+++...-.++... ..+..++ +|+++-.-.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~-Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~--- 238 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AE-VIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG--- 238 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-Ce-EEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC---
Confidence 445667777765 57889999999775 88 999998 5567777776555666543 2222333 577665432
Q ss_pred CChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707 232 WTDDECKLIMENCYKALLAGGKLIACEPVL 261 (309)
Q Consensus 232 ~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~ 261 (309)
...+....+.|+++|+++++-...
T Consensus 239 ------~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 239 ------PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred ------hhhHHHHHHHHhcCCEEEEECCCC
Confidence 134566777899999999997664
No 378
>PF13518 HTH_28: Helix-turn-helix domain
Probab=81.62 E-value=2.4 Score=27.34 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=31.9
Q ss_pred hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCc
Q 021707 9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGV 52 (309)
Q Consensus 9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gl 52 (309)
-++++.+ +|. |+.++|+.. |++...+.+|++.....|+
T Consensus 4 ~iv~~~~-~g~-s~~~~a~~~----gis~~tv~~w~~~y~~~G~ 41 (52)
T PF13518_consen 4 QIVELYL-EGE-SVREIAREF----GISRSTVYRWIKRYREGGI 41 (52)
T ss_pred HHHHHHH-cCC-CHHHHHHHH----CCCHhHHHHHHHHHHhcCH
Confidence 3556555 444 999999999 9999999999999998885
No 379
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=81.40 E-value=2.7 Score=38.24 Aligned_cols=106 Identities=17% Similarity=0.168 Sum_probs=67.6
Q ss_pred CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCC----CCC-Cceeee
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNS----IPA-ANAIFM 225 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~----~p~-~D~i~~ 225 (309)
-..+.+|||..++.|.=+..+++...+-..+++.|. ++-+...++ ..++.....|..+. .+. .|.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 455678999999999999999999874323899997 333333322 25677776665543 122 366663
Q ss_pred ----h--hhhhcCCh--------------hHHHHHHHHHHHhc----CCCcEEEEeccccCC
Q 021707 226 ----K--WVLATWTD--------------DECKLIMENCYKAL----LAGGKLIACEPVLLD 263 (309)
Q Consensus 226 ----~--~vlh~~~d--------------~~~~~iL~~~~~aL----~pgG~l~i~e~~~~~ 263 (309)
+ .++..-++ .--.++|+++.+.+ +|||+++-..-.+..
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~ 224 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP 224 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH
Confidence 1 22221111 12468999999999 999988866544433
No 380
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=81.32 E-value=5.5 Score=34.69 Aligned_cols=100 Identities=13% Similarity=0.158 Sum_probs=60.3
Q ss_pred CCcceEEEecCCccHHHHHHHHhcCC-CceEEEeec-hhHHhhCCCC---------------------------------
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQKHHF-ICEGINFDL-PEVVGEAPSI--------------------------------- 203 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-p~~~~~a~~~--------------------------------- 203 (309)
..+.++-|-.||.|.++.-+.-.+++ ++.+.+-|. +.+++.|+++
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 45679999999999998877766654 444788887 5666655431
Q ss_pred ---------------CCceEEeCCCCCCC-------CCC-ceeeehh---hhhcCCh----hHHHHHHHHHHHhcCCCcE
Q 021707 204 ---------------PGVTHIGGDMFNSI-------PAA-NAIFMKW---VLATWTD----DECKLIMENCYKALLAGGK 253 (309)
Q Consensus 204 ---------------~ri~~~~~d~~~~~-------p~~-D~i~~~~---vlh~~~d----~~~~~iL~~~~~aL~pgG~ 253 (309)
....+.+.|.|++. +.+ |+|+.-- -+-+|.. +-+.++|.+++.+|.+++.
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 12567778998852 223 8877532 2234643 3478999999999966666
Q ss_pred EEEec
Q 021707 254 LIACE 258 (309)
Q Consensus 254 l~i~e 258 (309)
+.+.+
T Consensus 210 V~v~~ 214 (246)
T PF11599_consen 210 VAVSD 214 (246)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66643
No 381
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=81.11 E-value=2 Score=35.11 Aligned_cols=45 Identities=9% Similarity=0.193 Sum_probs=39.3
Q ss_pred hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707 8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH 56 (309)
Q Consensus 8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~ 56 (309)
..+.+.+-.++..|..+||+.+ |+++..+.+=++-|...|++...
T Consensus 12 ~~Il~~Lq~d~R~s~~eiA~~l----glS~~tV~~Ri~rL~~~GvI~~~ 56 (153)
T PRK11179 12 RGILEALMENARTPYAELAKQF----GVSPGTIHVRVEKMKQAGIITGT 56 (153)
T ss_pred HHHHHHHHHcCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeeeE
Confidence 3455556678999999999999 99999999999999999999854
No 382
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=80.46 E-value=2.6 Score=34.88 Aligned_cols=45 Identities=11% Similarity=0.005 Sum_probs=39.4
Q ss_pred hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707 8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH 56 (309)
Q Consensus 8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~ 56 (309)
.-+...+-.++.+|..|||+.+ |+++..+.+=++-|...|++...
T Consensus 17 ~~IL~~Lq~d~R~s~~eiA~~l----glS~~tv~~Ri~rL~~~GvI~~~ 61 (164)
T PRK11169 17 RNILNELQKDGRISNVELSKRV----GLSPTPCLERVRRLERQGFIQGY 61 (164)
T ss_pred HHHHHHhccCCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeEEE
Confidence 3455566678999999999999 99999999999999999999854
No 383
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=80.38 E-value=2.1 Score=30.80 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=25.6
Q ss_pred hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHc
Q 021707 9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTS 49 (309)
Q Consensus 9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~ 49 (309)
-++.++...+|+|.++||..+ |++.+.++..|..+-.
T Consensus 28 ~LLr~LA~G~PVt~~~LA~a~----g~~~e~v~~~L~~~p~ 64 (77)
T PF12324_consen 28 PLLRLLAKGQPVTVEQLAAAL----GWPVEEVRAALAAMPD 64 (77)
T ss_dssp HHHHHHTTTS-B-HHHHHHHH----T--HHHHHHHHHH-TT
T ss_pred HHHHHHHcCCCcCHHHHHHHH----CCCHHHHHHHHHhCCC
Confidence 355666667899999999999 9999888888887753
No 384
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=80.10 E-value=2.6 Score=32.88 Aligned_cols=36 Identities=8% Similarity=0.155 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
.+.|++|||+.+ ..+++.++.+|+.|...|.++-.+
T Consensus 18 ~~vtl~elA~~l----~cS~Rn~r~lLkkm~~~gWi~W~p 53 (115)
T PF12793_consen 18 VEVTLDELAELL----FCSRRNARTLLKKMQEEGWITWQP 53 (115)
T ss_pred cceeHHHHHHHh----CCCHHHHHHHHHHHHHCCCeeeeC
Confidence 478999999999 999999999999999999999876
No 385
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=80.05 E-value=7.1 Score=35.67 Aligned_cols=89 Identities=12% Similarity=0.040 Sum_probs=48.2
Q ss_pred ceEEEecCCc-c-HHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCCCCCCceeeehhhhhcCChhHHH
Q 021707 162 KRLVDVGGSA-G-DCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECK 238 (309)
Q Consensus 162 ~~vlDvG~G~-G-~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~~p~~D~i~~~~vlh~~~d~~~~ 238 (309)
.+|.=||+|. | .++..+.+.....+ ++++|. ++..+.+++..-......+..+....+|+|++.-. .....
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~-V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp-----~~~~~ 80 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGE-IVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVP-----VGASG 80 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcE-EEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCC-----HHHHH
Confidence 5788888774 3 34444444433246 888998 44444443322111111222112344698887653 33445
Q ss_pred HHHHHHHHhcCCCcEEEE
Q 021707 239 LIMENCYKALLAGGKLIA 256 (309)
Q Consensus 239 ~iL~~~~~aL~pgG~l~i 256 (309)
.+++.+...++|+..++.
T Consensus 81 ~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 81 AVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred HHHHHHHhhCCCCCEEEe
Confidence 677777778888875443
No 386
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=79.38 E-value=2.7 Score=39.34 Aligned_cols=59 Identities=19% Similarity=0.293 Sum_probs=40.3
Q ss_pred CchHHHHHHHHhhcCCcccHHHHHhhcC--CCCCcceEEEecCCccHHHHHHHHh----cC----CCceEEEeechh
Q 021707 129 MPEMNGLMRRAISGVSVPFMTSVLDSYN--GFKGVKRLVDVGGSAGDCLRMILQK----HH----FICEGINFDLPE 195 (309)
Q Consensus 129 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~----~p----~~~~~~~~D~p~ 195 (309)
-|++...|.+..+. .+++.+. ..+...++|++|+|+|.++..+++. +| .++ ..+++.++
T Consensus 51 Apels~lFGella~-------~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~-~~iiE~s~ 119 (370)
T COG1565 51 APELSQLFGELLAE-------QFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALS-YYIIEPSP 119 (370)
T ss_pred chhHHHHHHHHHHH-------HHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcce-EEEEecCH
Confidence 47777888877652 2333332 1344678999999999999888765 45 445 78888743
No 387
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=79.38 E-value=4 Score=31.06 Aligned_cols=56 Identities=23% Similarity=0.354 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc--ccCceEEcChhchhhhcC
Q 021707 18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF--RGERKYSLTEIGKSLVTD 77 (309)
Q Consensus 18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~~t~~~~~l~~~ 77 (309)
++.+..+||+.+ ++++..+.++++-|...|+|.+.... ...-.+.+|+.++.+...
T Consensus 35 ~~~~~~~la~~l----~i~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~~~ 92 (126)
T COG1846 35 GGITVKELAERL----GLDRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELLEQ 92 (126)
T ss_pred CCCcHHHHHHHH----CCCHHHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHHHH
Confidence 444449999999 99999999999999999999987631 112368899988776654
No 388
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=79.31 E-value=1.6 Score=32.73 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707 16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT 76 (309)
Q Consensus 16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~ 76 (309)
.+++....-|.-.+ +++-...+..++.|+..|++.....+ ....|.+|+.|..|+.
T Consensus 28 ~~~~~~~Tri~y~a----Nlny~~~~~yi~~L~~~Gli~~~~~~-~~~~y~lT~KG~~fle 83 (95)
T COG3432 28 SEGGIGITRIIYGA----NLNYKRAQKYIEMLVEKGLIIKQDNG-RRKVYELTEKGKRFLE 83 (95)
T ss_pred cCCCCCceeeeeec----CcCHHHHHHHHHHHHhCCCEEeccCC-ccceEEEChhHHHHHH
Confidence 56777888888888 88999999999999999977666411 0127999999987764
No 389
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=79.20 E-value=4.8 Score=34.21 Aligned_cols=58 Identities=17% Similarity=0.107 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhcC
Q 021707 16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVTD 77 (309)
Q Consensus 16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~~ 77 (309)
..+++|..+||+.+ +++...+.++++-|...|+|.+... |...-...+|+.|+.+...
T Consensus 56 ~~~~itq~eLa~~l----~l~~sTvtr~l~rLE~kGlI~R~~~~~DrR~~~I~LTekG~~l~~~ 115 (185)
T PRK13777 56 HLKGASISEIAKFG----VMHVSTAFNFSKKLEERGYLTFSKKEDDKRNTYIELTEKGEELLLE 115 (185)
T ss_pred hCCCcCHHHHHHHH----CCCHhhHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHH
Confidence 45789999999999 9999999999999999999997642 2122358889888776653
No 390
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=79.01 E-value=3.3 Score=39.03 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=33.3
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechh
Q 021707 151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPE 195 (309)
Q Consensus 151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~ 195 (309)
+++.+..+.+...++|||.|.|+++.-+.-.| +++ +.++|-.+
T Consensus 144 lvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~ls-V~aIegsq 186 (476)
T KOG2651|consen 144 LVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLS-VKAIEGSQ 186 (476)
T ss_pred HHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-Cce-EEEeccch
Confidence 44433237778999999999999998877666 788 99999743
No 391
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=78.89 E-value=2.7 Score=34.06 Aligned_cols=45 Identities=11% Similarity=0.128 Sum_probs=39.8
Q ss_pred hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
-+.+.+-.+++.|..+||+.+ |+++..+.+-++-|...|++....
T Consensus 12 ~IL~~L~~d~r~~~~eia~~l----glS~~~v~~Ri~~L~~~GiI~~~~ 56 (154)
T COG1522 12 RILRLLQEDARISNAELAERV----GLSPSTVLRRIKRLEEEGVIKGYT 56 (154)
T ss_pred HHHHHHHHhCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCceeeEE
Confidence 345556678899999999999 999999999999999999998774
No 392
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=78.69 E-value=25 Score=27.52 Aligned_cols=90 Identities=20% Similarity=0.152 Sum_probs=58.1
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCCCCceEEeCCCCCC----CCCCceeeehhhhhcCChhH
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNS----IPAANAIFMKWVLATWTDDE 236 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~----~p~~D~i~~~~vlh~~~d~~ 236 (309)
..+|++||-|.=......++++ +.. ++..|..+- .++ ..++++.-|++.| ...+|+|+.-. |+.+
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~-g~d-v~atDI~~~--~a~--~g~~~v~DDitnP~~~iY~~A~lIYSiR-----pppE 82 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER-GFD-VLATDINEK--TAP--EGLRFVVDDITNPNISIYEGADLIYSIR-----PPPE 82 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc-CCc-EEEEecccc--cCc--ccceEEEccCCCccHHHhhCccceeecC-----CCHH
Confidence 4599999988766555545444 255 888888543 222 7899999999987 33468887665 4455
Q ss_pred HHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 237 CKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 237 ~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
...-+-.+.++.+ ..++|. ++..++
T Consensus 83 l~~~ildva~aVg--a~l~I~-pL~Ge~ 107 (129)
T COG1255 83 LQSAILDVAKAVG--APLYIK-PLTGEP 107 (129)
T ss_pred HHHHHHHHHHhhC--CCEEEE-ecCCCC
Confidence 5555555666654 334444 555555
No 393
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=78.59 E-value=8.3 Score=36.06 Aligned_cols=93 Identities=17% Similarity=0.129 Sum_probs=63.8
Q ss_pred ceEEEecCC-ccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCce---EEeCC-C----CCCC-C-CCceeeehhhh
Q 021707 162 KRLVDVGGS-AGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVT---HIGGD-M----FNSI-P-AANAIFMKWVL 229 (309)
Q Consensus 162 ~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~---~~~~d-~----~~~~-p-~~D~i~~~~vl 229 (309)
.+|+-+||| .|.++..+++.+.-.+ +++.|. +.-++.|++..... ....+ . .+.. . .+|+++-.--
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~-Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASV-VIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCce-EEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 389999999 6888889999988788 999998 77788887632222 11111 0 0111 1 2488774332
Q ss_pred hcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 230 ATWTDDECKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 230 h~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
....+..+.++++|+|++.++-..-++
T Consensus 248 -------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 -------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred -------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 234788899999999999998766555
No 394
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=78.14 E-value=3.9 Score=36.22 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=39.3
Q ss_pred hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
.+.+.+..++..+++|||+.+ ++++.-++|-|..|...|.+.+..
T Consensus 8 ~Il~~l~~~~~~~~~eLa~~l----~VS~~TiRRdL~~L~~~~~l~r~~ 52 (240)
T PRK10411 8 AIVDLLLNHTSLTTEALAEQL----NVSKETIRRDLNELQTQGKILRNH 52 (240)
T ss_pred HHHHHHHHcCCCcHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEec
Confidence 355556567899999999999 999999999999999999998764
No 395
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=77.99 E-value=4.1 Score=39.91 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=49.2
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcCCCC
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEG 80 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~~~~ 80 (309)
.+..+.++||+.+ |++...+.+.+..|.+.|+++..... ...|.+|+.++..+.+.+|
T Consensus 19 ~~~~~~~~la~~~----~~~~~~v~~~~~~L~~kg~v~~~~~~--~~~~~LT~eG~~~~~~G~P 76 (494)
T PTZ00326 19 NEIVNSLALAESL----NIDHQKVVGAIKSLESANYITTEMKK--SNTWTLTEEGEDYLKNGSP 76 (494)
T ss_pred CCCCCHHHHHHHc----CCCHHHHHHHHHHHHhCCCEEEEEEE--EEEEEECHHHHHHHHcCCH
Confidence 3679999999999 99999999999999999999876532 4689999999877766555
No 396
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=77.85 E-value=2.9 Score=36.66 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=43.7
Q ss_pred hhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 5 ECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 5 ~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
..+..+.+++...+|+.+.|||+++ |+++-.+..=+..|...|+++...
T Consensus 23 ~vRv~Il~lL~~k~plNvneiAe~l----gLpqst~s~~ik~Le~aGlirT~t 71 (308)
T COG4189 23 KVRVAILQLLHRKGPLNVNEIAEAL----GLPQSTMSANIKVLEKAGLIRTET 71 (308)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHh----CCchhhhhhhHHHHHhcCceeeee
Confidence 4567788888888999999999999 999999999999999999998654
No 397
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=77.62 E-value=7.4 Score=36.88 Aligned_cols=113 Identities=12% Similarity=0.135 Sum_probs=67.3
Q ss_pred HHHHhhcCCCCCcceEEEecCCccH----HHHHHHHhc---CCCceEEEeechh-----HHhhCCCC---------CCce
Q 021707 149 TSVLDSYNGFKGVKRLVDVGGSAGD----CLRMILQKH---HFICEGINFDLPE-----VVGEAPSI---------PGVT 207 (309)
Q Consensus 149 ~~~~~~~~~~~~~~~vlDvG~G~G~----~~~~l~~~~---p~~~~~~~~D~p~-----~~~~a~~~---------~ri~ 207 (309)
+.+++.+. -.+..+|+|+|.|.|. +..+|+++. |.++ +|+++.|. .++.+.++ =..+
T Consensus 100 qaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~Lr-IT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fe 177 (374)
T PF03514_consen 100 QAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLR-ITGIGPPNSGSADELQETGRRLAEFARSLGVPFE 177 (374)
T ss_pred HHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEE-EEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEE
Confidence 45777775 5567899999999997 555666653 6677 99999832 23322221 1234
Q ss_pred EEe--CCCCCCC-C------CCc--eeeehhhhhcCChh------HHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707 208 HIG--GDMFNSI-P------AAN--AIFMKWVLATWTDD------ECKLIMENCYKALLAGGKLIACEPVLLDDS 265 (309)
Q Consensus 208 ~~~--~d~~~~~-p------~~D--~i~~~~vlh~~~d~------~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~ 265 (309)
|.. .+-.+.+ + ... +|-+...||+..++ ....+|+.++ .|+|. .++++|.-.+.++
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P~-vvv~~E~ea~~n~ 250 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNPK-VVVLVEQEADHNS 250 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCCC-EEEEEeecCCCCC
Confidence 444 1222221 1 122 34466777887632 2345776655 78998 5777777766643
No 398
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=77.46 E-value=4.2 Score=37.24 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=39.2
Q ss_pred cceEEEecCCccH-HHHHHHHhcCCCceEEEeec-hhHHhhCCC--------CCCceEEeC----CCCCCC--C-C-Cce
Q 021707 161 VKRLVDVGGSAGD-CLRMILQKHHFICEGINFDL-PEVVGEAPS--------IPGVTHIGG----DMFNSI--P-A-ANA 222 (309)
Q Consensus 161 ~~~vlDvG~G~G~-~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~--------~~ri~~~~~----d~~~~~--p-~-~D~ 222 (309)
..+++|||+|... +.+--++.| +.+ +++-|. +..++.|++ .++|+++.. +++... + + .|+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~-fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWS-FVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---E-EEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCe-EEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 5789999999775 445445555 888 999998 555555543 278888754 455542 2 2 388
Q ss_pred eeehhhhhcCChh
Q 021707 223 IFMKWVLATWTDD 235 (309)
Q Consensus 223 i~~~~vlh~~~d~ 235 (309)
.+|+--+|.-.++
T Consensus 181 tmCNPPFy~s~~e 193 (299)
T PF05971_consen 181 TMCNPPFYSSQEE 193 (299)
T ss_dssp EEE-----SS---
T ss_pred EecCCccccChhh
Confidence 9998888765543
No 399
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=77.32 E-value=4.1 Score=36.81 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707 18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG 71 (309)
Q Consensus 18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~ 71 (309)
+..+.++||+.+.| .++...++.-|+.|..+|++++++ +|.|.-|..+
T Consensus 136 ~~~~~~~ia~~l~p--~is~~ev~~sL~~L~~~glikk~~----~g~y~~t~~~ 183 (271)
T TIGR02147 136 FADDPEELAKRCFP--KISAEQVKESLDLLERLGLIKKNE----DGFYKQTDKA 183 (271)
T ss_pred CCCCHHHHHHHhCC--CCCHHHHHHHHHHHHHCCCeeECC----CCcEEeecce
Confidence 44489999999922 378899999999999999999986 7899998754
No 400
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=77.28 E-value=2.6 Score=35.14 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=36.4
Q ss_pred hcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 14 RLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 14 ~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
.+..+|+|++||++.+ |++...+..-|+-|...|++.+.-
T Consensus 36 yls~~Pmtl~Ei~E~l----g~Sks~vS~~lkkL~~~~lV~~~~ 75 (177)
T COG1510 36 YLSRKPLTLDEIAEAL----GMSKSNVSMGLKKLQDWNLVKKVF 75 (177)
T ss_pred eecCCCccHHHHHHHH----CCCcchHHHHHHHHHhcchHHhhh
Confidence 3568999999999999 999999999999999999998753
No 401
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=77.01 E-value=3.4 Score=34.71 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=38.7
Q ss_pred hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
+++.++..|.+|=+|||+.+ |+...-++++|.+|...|++....
T Consensus 23 v~~~l~~kge~tDeela~~l----~i~~~~vrriL~~L~e~~li~~~k 66 (176)
T COG1675 23 VVDALLEKGELTDEELAELL----GIKKNEVRRILYALYEDGLISYRK 66 (176)
T ss_pred HHHHHHhcCCcChHHHHHHh----CccHHHHHHHHHHHHhCCceEEEe
Confidence 45556666789999999999 999999999999999999998654
No 402
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=76.92 E-value=3.1 Score=37.16 Aligned_cols=46 Identities=11% Similarity=0.092 Sum_probs=40.1
Q ss_pred hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
.-+.+.+-..+.+++.|||+.+ ++++.-++|-|..|...|++.+.-
T Consensus 8 ~~Il~~l~~~~~~~~~ela~~l----~vS~~TiRRdL~~Le~~g~l~r~~ 53 (252)
T PRK10906 8 DAIIELVKQQGYVSTEELVEHF----SVSPQTIRRDLNDLAEQNKILRHH 53 (252)
T ss_pred HHHHHHHHHcCCEeHHHHHHHh----CCCHHHHHHHHHHHHHCCCEEEec
Confidence 3455656567899999999999 999999999999999999998875
No 403
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=76.86 E-value=4.5 Score=37.28 Aligned_cols=55 Identities=15% Similarity=0.043 Sum_probs=41.9
Q ss_pred hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChh
Q 021707 9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEI 70 (309)
Q Consensus 9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~ 70 (309)
.+.+.+..+.+.+.++||+.+ |++...+.+-++.|...|++..... ...|.+.+-
T Consensus 8 ~il~~L~~~~~~s~~~LA~~l----gvsr~tV~~~l~~L~~~G~~i~~~~---~~Gy~L~~~ 62 (319)
T PRK11886 8 QLLSLLADGDFHSGEQLGEEL----GISRAAIWKHIQTLEEWGLDIFSVK---GKGYRLAEP 62 (319)
T ss_pred HHHHHHHcCCCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCCceEEec---CCeEEecCc
Confidence 344555556789999999999 9999999999999999999443321 235876554
No 404
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=76.83 E-value=5.7 Score=31.46 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=35.6
Q ss_pred CCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEc
Q 021707 20 LSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSL 67 (309)
Q Consensus 20 ~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~ 67 (309)
-|+.|||..+ |+++.-+.|..+.|...|++.... +.|.|-.
T Consensus 36 PSvRelA~~~----~VNpnTv~raY~eLE~eG~i~t~r---g~G~fV~ 76 (125)
T COG1725 36 PSVRELAKDL----GVNPNTVQRAYQELEREGIVETKR---GKGTFVT 76 (125)
T ss_pred CcHHHHHHHh----CCCHHHHHHHHHHHHHCCCEEEec---CeeEEEc
Confidence 3999999999 999999999999999999999886 2455544
No 405
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=76.66 E-value=4.3 Score=36.69 Aligned_cols=202 Identities=14% Similarity=0.069 Sum_probs=106.6
Q ss_pred CHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcCCCCCChHHHHHHhcch------h
Q 021707 21 SVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQD------A 94 (309)
Q Consensus 21 t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~i~~~~~~------~ 94 (309)
+.-.|++.. ..|.+.+..++..|...|++.... |...+|..+..|+..- .+... .....+ .
T Consensus 36 d~wkIvd~s----~~plp~v~~i~~~l~~egiv~~~~-----g~v~~TekG~E~~e~~---gi~~~-~~~~C~~CeGrgi 102 (354)
T COG1568 36 DFWKIVDYS----DLPLPLVASILEILEDEGIVKIEE-----GGVELTEKGEELAEEL---GIKKK-YDYTCECCEGRGI 102 (354)
T ss_pred chHhhhhhc----cCCchHHHHHHHHHHhcCcEEEec-----CcEeehhhhHHHHHHh---CCCcc-ccccccCcCCccc
Confidence 888999999 999999999999999999999985 5699999998777631 11100 000000 0
Q ss_pred hhhhhhhHHHHhcCCCCChhhhhhCCChhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhcC--CCCCcceEEEecCCcc
Q 021707 95 FMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYN--GFKGVKRLVDVGGSAG 172 (309)
Q Consensus 95 ~~~~~~~L~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~--~~~~~~~vlDvG~G~G 172 (309)
....+..|-+- |-+|..+.|+....|.+....--.. ...+.=.+. .+ .+..|+-+| -.-
T Consensus 103 ~l~~f~dll~k----------------f~eiaK~RP~p~~~yDQgfvTpEtt-v~Rv~lm~~RGDL-~gK~I~vvG-DDD 163 (354)
T COG1568 103 SLQAFKDLLEK----------------FREIAKDRPEPLHQYDQGFVTPETT-VSRVALMYSRGDL-EGKEIFVVG-DDD 163 (354)
T ss_pred cchhHHHHHHH----------------HHHHHhcCCCcchhcccccccccce-eeeeeeeccccCc-CCCeEEEEc-Cch
Confidence 00111111111 1112222333322332221100000 011111111 02 245699998 555
Q ss_pred HHHHHHHHhcCCCceEEEeechh-HHhhCC----C--CCCceEEeCCCCCCCCC-----CceeeehhhhhcCChhHHHHH
Q 021707 173 DCLRMILQKHHFICEGINFDLPE-VVGEAP----S--IPGVTHIGGDMFNSIPA-----ANAIFMKWVLATWTDDECKLI 240 (309)
Q Consensus 173 ~~~~~l~~~~p~~~~~~~~D~p~-~~~~a~----~--~~ri~~~~~d~~~~~p~-----~D~i~~~~vlh~~~d~~~~~i 240 (309)
.++++++-..---+ +.++|..+ .+.-.+ + .++|+.+..|..+++|+ .|+++.--.= +-.-....
T Consensus 164 Ltsia~aLt~mpk~-iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpe---Ti~alk~F 239 (354)
T COG1568 164 LTSIALALTGMPKR-IAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPPE---TIKALKLF 239 (354)
T ss_pred hhHHHHHhcCCCce-EEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCchh---hHHHHHHH
Confidence 55555554432334 88889843 333222 2 27799999999999886 3776642100 00122344
Q ss_pred HHHHHHhcCCC---cEEEEec
Q 021707 241 MENCYKALLAG---GKLIACE 258 (309)
Q Consensus 241 L~~~~~aL~pg---G~l~i~e 258 (309)
|.+=..+|+.- |++.|.-
T Consensus 240 lgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 240 LGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred HhccHHHhcCCCccceEeeee
Confidence 55556777743 6666653
No 406
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=76.19 E-value=10 Score=34.18 Aligned_cols=81 Identities=11% Similarity=-0.068 Sum_probs=47.2
Q ss_pred eEEEecCCc--cHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCCCCCCceeeehhhhhcCChhHHHH
Q 021707 163 RLVDVGGSA--GDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKL 239 (309)
Q Consensus 163 ~vlDvG~G~--G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~~p~~D~i~~~~vlh~~~d~~~~~ 239 (309)
+|.=||+|. |.++..|.++ +.+ ++++|. ++..+.+.+...+.....+. +....+|+|++.- |+....+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~-V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVilav-----p~~~~~~ 72 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHT-VYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILAL-----PIGLLLP 72 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCE-EEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEcC-----CHHHHHH
Confidence 456677663 3455555444 456 899997 45555544332222211121 1233469988875 5566678
Q ss_pred HHHHHHHhcCCCc
Q 021707 240 IMENCYKALLAGG 252 (309)
Q Consensus 240 iL~~~~~aL~pgG 252 (309)
+++++...++|+.
T Consensus 73 ~~~~l~~~l~~~~ 85 (279)
T PRK07417 73 PSEQLIPALPPEA 85 (279)
T ss_pred HHHHHHHhCCCCc
Confidence 8899988888764
No 407
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=76.04 E-value=4.1 Score=35.31 Aligned_cols=49 Identities=12% Similarity=0.162 Sum_probs=39.3
Q ss_pred hhhhhhhhhhc-CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 5 ECRDGRKKVRL-ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 5 ~~~~g~~~~~l-~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
.++.-+.+.+- .+.+.|++|+|+.+ |++.--.+|.|.+|++.|++...-
T Consensus 158 ~Tl~~i~~~~~~~~~~~Taeela~~~----giSRvTaRRYLeyl~~~~~l~a~i 207 (224)
T COG4565 158 LTLQKVREALKEPDQELTAEELAQAL----GISRVTARRYLEYLVSNGILEAEI 207 (224)
T ss_pred HHHHHHHHHHhCcCCccCHHHHHHHh----CccHHHHHHHHHHHHhcCeeeEEe
Confidence 34444444443 35799999999999 999999999999999999998653
No 408
>PRK05638 threonine synthase; Validated
Probab=75.92 E-value=4.5 Score=39.22 Aligned_cols=64 Identities=20% Similarity=0.242 Sum_probs=48.4
Q ss_pred hhhhhhhhcCCCCCCHHHHHHHhCcCCC--CCcchHHHHHHHHHcCCceeee-cccccCceEEcChhchhhhc
Q 021707 7 RDGRKKVRLANTPLSVSQILTCILPSGG--GDAENLQCILRLLTSYGVFSEH-REFRGERKYSLTEIGKSLVT 76 (309)
Q Consensus 7 ~~g~~~~~l~~~~~t~~eLA~~~~~~~g--~~~~~l~rlL~~L~~~gll~~~-~~~~~~~~y~~t~~~~~l~~ 76 (309)
++-++.++ ..++.+.-||++.+ + +++..+.+.|+.|...|+|+.. .++ ..-.|++|+.+..++.
T Consensus 373 r~~IL~~L-~~~~~~~~el~~~l----~~~~s~~~v~~hL~~Le~~GLV~~~~~~g-~~~~Y~Lt~~g~~~l~ 439 (442)
T PRK05638 373 KLEILKIL-SEREMYGYEIWKAL----GKPLKYQAVYQHIKELEELGLIEEAYRKG-RRVYYKLTEKGRRLLE 439 (442)
T ss_pred HHHHHHHH-hhCCccHHHHHHHH----cccCCcchHHHHHHHHHHCCCEEEeecCC-CcEEEEECcHHHHHHH
Confidence 34455543 57799999999999 8 7889999999999999999764 211 1235999998876543
No 409
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=75.14 E-value=4 Score=39.21 Aligned_cols=87 Identities=11% Similarity=0.017 Sum_probs=54.6
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC--CCC--Cceeeehhh
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS--IPA--ANAIFMKWV 228 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~--~p~--~D~i~~~~v 228 (309)
...|||||.|+|.++...+++..+ + ++.++. -.|+..+++ .++|+++.---.+- .|. +|+++.--+
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD-~-vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~f 144 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGAD-S-VTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDF 144 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCC-e-EEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhh
Confidence 468999999999999999998744 3 788886 556665553 26777765322221 223 466655444
Q ss_pred hhcCChhHHHHHHHHHHHhcC
Q 021707 229 LATWTDDECKLIMENCYKALL 249 (309)
Q Consensus 229 lh~~~d~~~~~iL~~~~~aL~ 249 (309)
.-.+.-+-+..-++.+.+.|.
T Consensus 145 dtEligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 145 DTELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhhhccccchhHHHHHHHhc
Confidence 444433434556666666664
No 410
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=75.06 E-value=4 Score=32.13 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=41.1
Q ss_pred HHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcCC
Q 021707 24 QILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDA 78 (309)
Q Consensus 24 eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~~ 78 (309)
+||+.+ +++-+-|--+++++.-+||++.. +|-..+|+.|+.|+..+
T Consensus 2 ~La~~l----~~eiDdL~p~~eAaelLgf~~~~-----~Gdi~LT~~G~~f~~a~ 47 (120)
T PF09821_consen 2 QLADEL----HLEIDDLLPIVEAAELLGFAEVE-----EGDIRLTPLGRRFAEAD 47 (120)
T ss_pred chHHHh----CCcHHHHHHHHHHHHHcCCeeec-----CCcEEeccchHHHHHCC
Confidence 478888 99999999999999999999998 47799999999998763
No 411
>PF09904 HTH_43: Winged helix-turn helix; InterPro: IPR017162 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3KE2_B.
Probab=75.00 E-value=1.9 Score=31.89 Aligned_cols=51 Identities=14% Similarity=0.254 Sum_probs=32.8
Q ss_pred cCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc-c--ccCceEEcCh
Q 021707 15 LANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE-F--RGERKYSLTE 69 (309)
Q Consensus 15 l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~-~--~~~~~y~~t~ 69 (309)
++.+..++..|-+.+ |+|.+-+++.+.+|..+|+..+-.+ + +..|.|+++.
T Consensus 17 i~~~~~nvp~L~~~T----GmPrRT~Qd~i~aL~~~~I~~~Fvq~G~R~~~GyY~i~~ 70 (90)
T PF09904_consen 17 IDSGERNVPALMEAT----GMPRRTIQDTIKALPELGIECEFVQDGERNNAGYYRISD 70 (90)
T ss_dssp HHHS-B-HHHHHHHH-------HHHHHHHHHGGGGGT-EEEEE--TTS-S--EEEEEE
T ss_pred HhcCCccHHHHHHHh----CCCHhHHHHHHHHhhcCCeEEEEEecCccCCCCcEEeee
Confidence 345556999999999 9999999999999999999765221 1 2257788874
No 412
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=74.58 E-value=3.1 Score=31.74 Aligned_cols=82 Identities=27% Similarity=0.178 Sum_probs=47.7
Q ss_pred CCccHHHHHHHHhcC--CCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC--CC-----CCceeeehhhhhcCChhHHH
Q 021707 169 GSAGDCLRMILQKHH--FICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS--IP-----AANAIFMKWVLATWTDDECK 238 (309)
Q Consensus 169 ~G~G~~~~~l~~~~p--~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~--~p-----~~D~i~~~~vlh~~~d~~~~ 238 (309)
||.|.++..+++... +.+ ++++|. ++.++.+++.. +.++.||..++ +. .++.+++..- .|....
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~-vvvid~d~~~~~~~~~~~-~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n~ 77 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGID-VVVIDRDPERVEELREEG-VEVIYGDATDPEVLERAGIEKADAVVILTD----DDEENL 77 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSE-EEEEESSHHHHHHHHHTT-SEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCE-EEEEECCcHHHHHHHhcc-cccccccchhhhHHhhcCccccCEEEEccC----CHHHHH
Confidence 455566666666542 335 899998 56666655443 88999999875 21 2466655432 444444
Q ss_pred HHHHHHHHhcCCCcEEEEe
Q 021707 239 LIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 239 ~iL~~~~~aL~pgG~l~i~ 257 (309)
.+.. ..+.+.|..+++..
T Consensus 78 ~~~~-~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 78 LIAL-LARELNPDIRIIAR 95 (116)
T ss_dssp HHHH-HHHHHTTTSEEEEE
T ss_pred HHHH-HHHHHCCCCeEEEE
Confidence 4444 44566777776654
No 413
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=73.47 E-value=4.6 Score=36.41 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=39.4
Q ss_pred hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
-+.+.+-..+.+++.|||+.+ ++++.-++|=|..|...|++.+..
T Consensus 21 ~Il~~L~~~~~vtv~eLa~~l----~VS~~TIRRDL~~Le~~G~l~r~~ 65 (269)
T PRK09802 21 QIIQRLRQQGSVQVNDLSALY----GVSTVTIRNDLAFLEKQGIAVRAY 65 (269)
T ss_pred HHHHHHHHcCCEeHHHHHHHH----CCCHHHHHHHHHHHHhCCCeEEEe
Confidence 345555567889999999999 999999999999999999999875
No 414
>PRK06474 hypothetical protein; Provisional
Probab=73.26 E-value=5.6 Score=33.51 Aligned_cols=65 Identities=17% Similarity=0.192 Sum_probs=47.8
Q ss_pred hhhhhhhhhhcCCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc----ccCceEEcChhch
Q 021707 5 ECRDGRKKVRLANT-PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF----RGERKYSLTEIGK 72 (309)
Q Consensus 5 ~~~~g~~~~~l~~~-~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~----~~~~~y~~t~~~~ 72 (309)
..++.+++.+...+ +.|+.||++.+ + +++...+.|-|+.|...|+|...... .....|++++.+.
T Consensus 11 p~R~~Il~~L~~~~~~~ta~el~~~l-~--~is~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~~ 80 (178)
T PRK06474 11 PVRMKICQVLMRNKEGLTPLELVKIL-K--DVPQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEEDA 80 (178)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHh-c--CCCHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEecccee
Confidence 35667777776655 49999999998 1 36777899999999999999976521 1123588887653
No 415
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=73.06 E-value=1.8 Score=30.86 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=33.4
Q ss_pred hhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceee
Q 021707 11 KKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSE 55 (309)
Q Consensus 11 ~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~ 55 (309)
|.+.......|.+|||+.+ |+++..++.++..+...|.+.+
T Consensus 24 f~L~R~~eGlS~kEIAe~L----GIS~~TVk~~l~~~~~~~~~~~ 64 (73)
T TIGR03879 24 AALAREEAGKTASEIAEEL----GRTEQTVRNHLKGETKAGGLVK 64 (73)
T ss_pred HHHHHHHcCCCHHHHHHHH----CcCHHHHHHHHhcCcccchHHH
Confidence 3333234679999999999 9999999999999888887754
No 416
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=72.90 E-value=4.8 Score=39.04 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=39.7
Q ss_pred hhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707 12 KVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE 69 (309)
Q Consensus 12 ~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~ 69 (309)
..+|.+||.|+.||++.+ |++...+.+.|..| .|+|...+++. .-.|+++.
T Consensus 6 ~~~L~~g~~~~~eL~~~l----~~sq~~~s~~L~~L--~~~V~~~~~gr-~~~Y~l~~ 56 (442)
T PRK09775 6 TTLLLQGPLSAAELAARL----GVSQATLSRLLAAL--GDQVVRFGKAR-ATRYALLR 56 (442)
T ss_pred HHHHhcCCCCHHHHHHHh----CCCHHHHHHHHHHh--hcceeEeccCc-eEEEEecc
Confidence 445678999999999999 99999999999999 88887776321 12455544
No 417
>PF09681 Phage_rep_org_N: N-terminal phage replisome organiser (Phage_rep_org_N); InterPro: IPR010056 This entry is represented by the N-terminal domain of Bacteriophage A500, Gp45. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The proteins in this entry contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The low-complexity region is adjacent to this N-terminal domain.
Probab=72.86 E-value=7.7 Score=30.54 Aligned_cols=49 Identities=8% Similarity=0.164 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhh
Q 021707 18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSL 74 (309)
Q Consensus 18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l 74 (309)
-|-|.++||..+ +-+.+.++.-|..+...|+++..+ ++.|.++...+..
T Consensus 52 ipy~~e~LA~~~----~~~~~~V~~AL~~f~k~glIe~~e----d~~i~i~~~~~~~ 100 (121)
T PF09681_consen 52 IPYTAEMLALEF----DRPVDTVRLALAVFQKLGLIEIDE----DGVIYIPNWEKHQ 100 (121)
T ss_pred CCCcHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEEec----CCeEEeecHHHHh
Confidence 499999999999 999999999999999999999986 7888888655443
No 418
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=72.78 E-value=4 Score=33.22 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=35.5
Q ss_pred hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCce
Q 021707 10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVF 53 (309)
Q Consensus 10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll 53 (309)
+++.++.++.+|-++||+.+ |++...++++|..|..-+++
T Consensus 6 v~d~L~~~~~~~dedLa~~l----~i~~n~vRkiL~~L~ed~~~ 45 (147)
T smart00531 6 VLDALMRNGCVTEEDLAELL----GIKQKQLRKILYLLYDEKLI 45 (147)
T ss_pred ehHHHHhcCCcCHHHHHHHh----CCCHHHHHHHHHHHHhhhcc
Confidence 56777788999999999999 99999999999999994443
No 419
>PRK09333 30S ribosomal protein S19e; Provisional
Probab=72.77 E-value=8.1 Score=31.56 Aligned_cols=52 Identities=25% Similarity=0.471 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHhCcCCCC-------Ccch-------HHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707 16 ANTPLSVSQILTCILPSGGG-------DAEN-------LQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT 76 (309)
Q Consensus 16 ~~~~~t~~eLA~~~~~~~g~-------~~~~-------l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~ 76 (309)
.++|+.+..|+... |. +... ++..|+.|..+|+|+... .|+ .+|+.+..++.
T Consensus 64 ~~gpvGV~~L~~~y----Gg~k~~G~~P~h~~~~sg~iiR~~LqqLE~~glVek~~----~GR-~lT~~G~~~LD 129 (150)
T PRK09333 64 IDGPVGVERLRTAY----GGRKNRGVRPEHFVKGSGSIIRKILQQLEKAGLVEKTK----KGR-VITPKGRSLLD 129 (150)
T ss_pred HcCCccHHHHHHHH----CCCcCCCCCCCccccCccHHHHHHHHHHHHCCCeeeCC----CCC-EeCHHHHHHHH
Confidence 47899999999999 76 5555 999999999999999875 333 47887766654
No 420
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=72.55 E-value=14 Score=33.45 Aligned_cols=86 Identities=12% Similarity=0.068 Sum_probs=51.9
Q ss_pred ceEEEecCC--ccHHHHHHHHhcCCCceEEEeech-hHHhhCCCCCCceEEeCCC-CCCCCCCceeeehhhhhcCChhHH
Q 021707 162 KRLVDVGGS--AGDCLRMILQKHHFICEGINFDLP-EVVGEAPSIPGVTHIGGDM-FNSIPAANAIFMKWVLATWTDDEC 237 (309)
Q Consensus 162 ~~vlDvG~G--~G~~~~~l~~~~p~~~~~~~~D~p-~~~~~a~~~~ri~~~~~d~-~~~~p~~D~i~~~~vlh~~~d~~~ 237 (309)
.+|+=+|.| -|.++..+.++.+... +++.|.. ..+..+.+..=+.-...+. ......+|+|+++-- -...
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~-i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavP-----i~~~ 77 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVR-IIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVP-----IEAT 77 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEE-EEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEecc-----HHHH
Confidence 356666665 4567777777777777 8888873 3444443322111111222 233555799998763 3556
Q ss_pred HHHHHHHHHhcCCCcE
Q 021707 238 KLIMENCYKALLAGGK 253 (309)
Q Consensus 238 ~~iL~~~~~aL~pgG~ 253 (309)
.++++++...|+||..
T Consensus 78 ~~~l~~l~~~l~~g~i 93 (279)
T COG0287 78 EEVLKELAPHLKKGAI 93 (279)
T ss_pred HHHHHHhcccCCCCCE
Confidence 7888888888888753
No 421
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=72.48 E-value=8.1 Score=30.75 Aligned_cols=52 Identities=10% Similarity=0.107 Sum_probs=39.7
Q ss_pred hhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 6 CRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 6 ~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
.+.-+.+.+-..++.|+.||.+.++...+++..-+..+|+-|...|+|....
T Consensus 5 ~E~~VM~vlW~~~~~t~~eI~~~l~~~~~~~~tTv~T~L~rL~~KG~v~~~k 56 (130)
T TIGR02698 5 AEWEVMRVVWTLGETTSRDIIRILAEKKDWSDSTIKTLLGRLVDKGCLTTEK 56 (130)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhccCCcHHHHHHHHHHHHHCCceeeec
Confidence 3444555555778999999777763222788889999999999999998775
No 422
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=71.50 E-value=6.4 Score=33.41 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=33.2
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 19 PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 19 ~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
+.|..+||+.+ |+++..+.|+|..|...|++...+
T Consensus 168 ~~t~~~lA~~l----G~tr~tvsR~l~~l~~~gii~~~~ 202 (211)
T PRK11753 168 KITRQEIGRIV----GCSREMVGRVLKMLEDQGLISAHG 202 (211)
T ss_pred CCCHHHHHHHh----CCCHHHHHHHHHHHHHCCCEEecC
Confidence 78999999999 999999999999999999998874
No 423
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=71.48 E-value=2.8 Score=26.94 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=22.9
Q ss_pred hhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCc
Q 021707 7 RDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGV 52 (309)
Q Consensus 7 ~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gl 52 (309)
++-++.+... ..|..+||+.+ |++...+.+|++.....|+
T Consensus 7 R~~ii~l~~~--G~s~~~ia~~l----gvs~~Tv~~w~kr~~~~G~ 46 (50)
T PF13384_consen 7 RAQIIRLLRE--GWSIREIAKRL----GVSRSTVYRWIKRYREEGL 46 (50)
T ss_dssp ---HHHHHHH--T--HHHHHHHH----TS-HHHHHHHHT-------
T ss_pred HHHHHHHHHC--CCCHHHHHHHH----CcCHHHHHHHHHHcccccc
Confidence 3445555543 79999999999 9999999999998777664
No 424
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=71.22 E-value=6.6 Score=27.88 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=35.0
Q ss_pred cCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707 15 LANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH 56 (309)
Q Consensus 15 l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~ 56 (309)
++.+..|.+||-+.+ |++...|...|.-|...|++.+.
T Consensus 14 ls~~c~TLeeL~ekT----gi~k~~LlV~LsrL~k~GiI~Rk 51 (72)
T PF05584_consen 14 LSKRCCTLEELEEKT----GISKNTLLVYLSRLAKRGIIERK 51 (72)
T ss_pred HHhccCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCeeee
Confidence 355689999999999 99999999999999999999876
No 425
>PRK09462 fur ferric uptake regulator; Provisional
Probab=71.12 E-value=9.3 Score=30.96 Aligned_cols=53 Identities=15% Similarity=0.156 Sum_probs=40.5
Q ss_pred hhhhhhhhhhcC--CCCCCHHHHHHHhCcCC-CCCcchHHHHHHHHHcCCceeeec
Q 021707 5 ECRDGRKKVRLA--NTPLSVSQILTCILPSG-GGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 5 ~~~~g~~~~~l~--~~~~t~~eLA~~~~~~~-g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
.=+..+++.+.. +++.|++||-+.+.... +++..-+.|.|+.|+..|++.+..
T Consensus 17 ~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~~~ 72 (148)
T PRK09462 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (148)
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 345667777764 36999999999882211 466789999999999999998764
No 426
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=71.06 E-value=6.9 Score=32.63 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=33.3
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 19 PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 19 ~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
|.|-+|||..+ |+....+.|.|..|...|+++...
T Consensus 143 ~~t~~~iA~~l----G~tretvsR~l~~l~~~g~I~~~~ 177 (193)
T TIGR03697 143 RLSHQAIAEAI----GSTRVTITRLLGDLRKKKLISIHK 177 (193)
T ss_pred CCCHHHHHHHh----CCcHHHHHHHHHHHHHCCCEEecC
Confidence 68999999999 999999999999999999999874
No 427
>PRK00215 LexA repressor; Validated
Probab=70.67 E-value=6.1 Score=33.83 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHhCcCCCC-CcchHHHHHHHHHcCCceeeec
Q 021707 17 NTPLSVSQILTCILPSGGG-DAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~-~~~~l~rlL~~L~~~gll~~~~ 57 (309)
+.+.|..|||+.+ |+ +...+.++|..|...|++++..
T Consensus 21 ~~~~s~~ela~~~----~~~~~~tv~~~l~~L~~~g~i~~~~ 58 (205)
T PRK00215 21 GYPPSRREIADAL----GLRSPSAVHEHLKALERKGFIRRDP 58 (205)
T ss_pred CCCCCHHHHHHHh----CCCChHHHHHHHHHHHHCCCEEeCC
Confidence 4578999999999 99 8999999999999999998875
No 428
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=70.56 E-value=6.9 Score=33.95 Aligned_cols=42 Identities=12% Similarity=0.248 Sum_probs=37.5
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707 19 PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE 69 (309)
Q Consensus 19 ~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~ 69 (309)
|+|.++||+.+ |+....+.|+|..|...|+++..+ +.+.+..
T Consensus 184 ~lt~~~iA~~l----G~sr~tvsR~l~~l~~~g~I~~~~-----~~i~i~d 225 (235)
T PRK11161 184 TMTRGDIGNYL----GLTVETISRLLGRFQKSGMLAVKG-----KYITIEN 225 (235)
T ss_pred cccHHHHHHHh----CCcHHHHHHHHHHHHHCCCEEecC-----CEEEEcC
Confidence 68999999999 999999999999999999999884 5666654
No 429
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=70.51 E-value=9.4 Score=34.28 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=30.6
Q ss_pred CCCcceEEEecCCccHHHHHHHHhc-----CCCceEEEeec
Q 021707 158 FKGVKRLVDVGGSAGDCLRMILQKH-----HFICEGINFDL 193 (309)
Q Consensus 158 ~~~~~~vlDvG~G~G~~~~~l~~~~-----p~~~~~~~~D~ 193 (309)
+.+...++++|||.|.++..+.+.. +..+ ++.+|.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~-~~lIDR 55 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSR-FVLIDR 55 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCcc-EEEEec
Confidence 5667799999999999999999988 4567 899998
No 430
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=70.50 E-value=7.2 Score=33.97 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=37.2
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707 19 PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE 69 (309)
Q Consensus 19 ~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~ 69 (309)
+.|.++||..+ |+.+..+.|.|..|...|+++..+ .+++.+..
T Consensus 179 ~lt~~~IA~~l----GisretlsR~L~~L~~~GlI~~~~----~~~i~I~D 221 (230)
T PRK09391 179 PMSRRDIADYL----GLTIETVSRALSQLQDRGLIGLSG----ARQIELRN 221 (230)
T ss_pred cCCHHHHHHHH----CCCHHHHHHHHHHHHHCCcEEecC----CceEEEcC
Confidence 68999999999 999999999999999999998763 35676654
No 431
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=70.45 E-value=3.9 Score=33.10 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=45.8
Q ss_pred EEEeec-hhHHhhCCC-------CCCceEEeCCC---CCCCCC--CceeeehhhhhcCC---------hhHHHHHHHHHH
Q 021707 188 GINFDL-PEVVGEAPS-------IPGVTHIGGDM---FNSIPA--ANAIFMKWVLATWT---------DDECKLIMENCY 245 (309)
Q Consensus 188 ~~~~D~-p~~~~~a~~-------~~ri~~~~~d~---~~~~p~--~D~i~~~~vlh~~~---------d~~~~~iL~~~~ 245 (309)
+.++|. ++.++..++ .+|++++..+= .+..+. .|+++++. -++| .+.....|+++.
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 788998 566666553 26899887532 223454 37776542 2333 234678899999
Q ss_pred HhcCCCcEEEEeccccCCC
Q 021707 246 KALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 246 ~aL~pgG~l~i~e~~~~~~ 264 (309)
+.|+|||.+.|+ ....++
T Consensus 80 ~lL~~gG~i~iv-~Y~GH~ 97 (140)
T PF06962_consen 80 ELLKPGGIITIV-VYPGHP 97 (140)
T ss_dssp HHEEEEEEEEEE-E--STC
T ss_pred HhhccCCEEEEE-EeCCCC
Confidence 999999988887 445454
No 432
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=69.74 E-value=9.5 Score=33.72 Aligned_cols=37 Identities=27% Similarity=0.258 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
++.++..+||++. |++.-.+++-++.|.+.|+++...
T Consensus 196 egrlse~eLAerl----GVSRs~ireAlrkLE~aGvIe~r~ 232 (251)
T TIGR02787 196 EGLLVASKIADRV----GITRSVIVNALRKLESAGVIESRS 232 (251)
T ss_pred cccccHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEecc
Confidence 4899999999999 999999999999999999998874
No 433
>PTZ00357 methyltransferase; Provisional
Probab=69.73 E-value=18 Score=37.05 Aligned_cols=124 Identities=13% Similarity=0.033 Sum_probs=74.2
Q ss_pred ChhhhhhcCchHHHHHHHHhhcCCcccHHHHHh----------------------hcCC---CCCcceEEEecCCccHHH
Q 021707 121 PAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLD----------------------SYNG---FKGVKRLVDVGGSAGDCL 175 (309)
Q Consensus 121 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~----------------------~~~~---~~~~~~vlDvG~G~G~~~ 175 (309)
..|+.++++|.--+.|.+++...- .++.+ ..+. -.....|+-||+|.|-+.
T Consensus 640 ~TYEVFEKDpVKYdqYE~AI~kAL----~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLV 715 (1072)
T PTZ00357 640 GVYEVFERDARKYRQYREAVFHYV----RDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLI 715 (1072)
T ss_pred hhHHHHcCCcHHHHHHHHHHHHHH----HHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHH
Confidence 467888888877778887775321 11111 0000 011246899999999998
Q ss_pred HHHHHhcCC----CceEEEeec-hhHH--hhCC-----CC--------CCceEEeCCCCCC-CC-------------CCc
Q 021707 176 RMILQKHHF----ICEGINFDL-PEVV--GEAP-----SI--------PGVTHIGGDMFNS-IP-------------AAN 221 (309)
Q Consensus 176 ~~l~~~~p~----~~~~~~~D~-p~~~--~~a~-----~~--------~ri~~~~~d~~~~-~p-------------~~D 221 (309)
.+.++.... ++ +.+++- |..+ ...+ .. ++|+++..||.+- .| .+|
T Consensus 716 draLrAak~~gvkVr-IyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaD 794 (1072)
T PTZ00357 716 DECLHAVSALGVRLR-IFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCD 794 (1072)
T ss_pred HHHHHHHHHcCCcEE-EEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccc
Confidence 888776553 34 666664 3421 1111 11 3589999999874 22 235
Q ss_pred eeeehhhhhcCChhH-HHHHHHHHHHhcCC
Q 021707 222 AIFMKWVLATWTDDE-CKLIMENCYKALLA 250 (309)
Q Consensus 222 ~i~~~~vlh~~~d~~-~~~iL~~~~~aL~p 250 (309)
+++ +-.|--|.|.| ..+.|.-+.+-||+
T Consensus 795 IVV-SELLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 795 LIV-SELLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred eeh-HhhhcccccccCCHHHHHHHHHhhhh
Confidence 554 55566666654 45677777777765
No 434
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=69.71 E-value=5.8 Score=35.40 Aligned_cols=45 Identities=13% Similarity=0.108 Sum_probs=40.5
Q ss_pred hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
-+++++-.+|.++++|||+.+ ++++.-++|=|..|...|++.+.-
T Consensus 9 ~Il~~l~~~g~v~v~eLa~~~----~VS~~TIRRDL~~Le~~g~l~R~h 53 (253)
T COG1349 9 KILELLKEKGKVSVEELAELF----GVSEMTIRRDLNELEEQGLLLRVH 53 (253)
T ss_pred HHHHHHHHcCcEEHHHHHHHh----CCCHHHHHHhHHHHHHCCcEEEEe
Confidence 456666678999999999999 999999999999999999999975
No 435
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=68.70 E-value=9.8 Score=32.92 Aligned_cols=47 Identities=13% Similarity=0.170 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG 71 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~ 71 (309)
+..++..+||+.. |++...++.-|+.|...|+|+..+ ...+...+.+
T Consensus 28 G~~L~e~eLae~l----gVSRtpVREAL~~L~~eGlv~~~~----~~G~~V~~~~ 74 (224)
T PRK11534 28 DEKLRMSLLTSRY----ALGVGPLREALSQLVAERLVTVVN----QKGYRVASMS 74 (224)
T ss_pred CCcCCHHHHHHHH----CCChHHHHHHHHHHHHCCCEEEeC----CCceEeCCCC
Confidence 4578999999999 999999999999999999999875 3335555544
No 436
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=68.22 E-value=6 Score=24.83 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=23.8
Q ss_pred hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHH
Q 021707 9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLL 47 (309)
Q Consensus 9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L 47 (309)
.+.+.+-.++..|.++||+.+ |+++..+.+=++.|
T Consensus 7 ~Il~~Lq~d~r~s~~~la~~l----glS~~~v~~Ri~rL 41 (42)
T PF13404_consen 7 KILRLLQEDGRRSYAELAEEL----GLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHH-TTS-HHHHHHHH----TS-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCccHHHHHHHH----CcCHHHHHHHHHHh
Confidence 345556668999999999999 99987666555443
No 437
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=68.20 E-value=8 Score=32.57 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=36.7
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707 19 PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE 69 (309)
Q Consensus 19 ~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~ 69 (309)
+.|-++||..+ |+.+..+.|.|..|...|+++.. .+++.+..
T Consensus 149 ~~t~~~iA~~l----G~tretvsR~l~~l~~~g~I~~~-----~~~i~I~d 190 (202)
T PRK13918 149 YATHDELAAAV----GSVRETVTKVIGELSREGYIRSG-----YGKIQLLD 190 (202)
T ss_pred cCCHHHHHHHh----CccHHHHHHHHHHHHHCCCEEcC-----CCEEEEEC
Confidence 78999999999 99999999999999999999966 35565543
No 438
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=68.15 E-value=11 Score=31.82 Aligned_cols=41 Identities=7% Similarity=0.053 Sum_probs=31.9
Q ss_pred ceeeehhhhhcCCh----------hHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707 221 NAIFMKWVLATWTD----------DECKLIMENCYKALLAGGKLIACEPVL 261 (309)
Q Consensus 221 D~i~~~~vlh~~~d----------~~~~~iL~~~~~aL~pgG~l~i~e~~~ 261 (309)
|+|++++.|||+.- +...+++.+++++|+|+.+++..-+..
T Consensus 52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 99999999998753 346788888888998887766665444
No 439
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=67.61 E-value=5.3 Score=27.31 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=27.6
Q ss_pred hhhhhhhcC-CCCCCHHHHHHHhCcCCCCCcchHHHHH
Q 021707 8 DGRKKVRLA-NTPLSVSQILTCILPSGGGDAENLQCIL 44 (309)
Q Consensus 8 ~g~~~~~l~-~~~~t~~eLA~~~~~~~g~~~~~l~rlL 44 (309)
.-||++.+. +|.++..+||+.+ |+++..++.|=
T Consensus 10 dkA~e~y~~~~g~i~lkdIA~~L----gvs~~tIr~WK 43 (60)
T PF10668_consen 10 DKAFEIYKESNGKIKLKDIAEKL----GVSESTIRKWK 43 (60)
T ss_pred HHHHHHHHHhCCCccHHHHHHHH----CCCHHHHHHHh
Confidence 457787775 5899999999999 99998888873
No 440
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=67.51 E-value=23 Score=35.88 Aligned_cols=87 Identities=16% Similarity=0.086 Sum_probs=53.9
Q ss_pred ceEEEecCCccHHHHHHHHhc--CCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC-------CCCCceeeehhhhhc
Q 021707 162 KRLVDVGGSAGDCLRMILQKH--HFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS-------IPAANAIFMKWVLAT 231 (309)
Q Consensus 162 ~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~-------~p~~D~i~~~~vlh~ 231 (309)
.+|+=+|+| .++..+++.. .+.+ ++++|. |+.++.+++ .....+.||..++ ..++|+++...-
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~-vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~--- 473 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMR-ITVLERDISAVNLMRK-YGYKVYYGDATQLELLRAAGAEKAEAIVITCN--- 473 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCC-EEEEECCHHHHHHHHh-CCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC---
Confidence 466666554 5555444432 3556 999998 677777765 4678889999865 223576665432
Q ss_pred CChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707 232 WTDDECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 232 ~~d~~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
+++++..+...+++ +.|+.+++..
T Consensus 474 -d~~~n~~i~~~~r~-~~p~~~IiaR 497 (601)
T PRK03659 474 -EPEDTMKIVELCQQ-HFPHLHILAR 497 (601)
T ss_pred -CHHHHHHHHHHHHH-HCCCCeEEEE
Confidence 34455555555554 6788777763
No 441
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=67.45 E-value=6.6 Score=35.23 Aligned_cols=48 Identities=13% Similarity=0.218 Sum_probs=40.7
Q ss_pred hhhhhhhhcCC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc
Q 021707 7 RDGRKKVRLAN-TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE 58 (309)
Q Consensus 7 ~~g~~~~~l~~-~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~ 58 (309)
+.-+.+.+... |.++.+||..++ |.+..-+.|+|+-|...|++++.+.
T Consensus 197 e~~il~~i~~~GGri~Q~eL~r~l----glsktTvsR~L~~LEk~GlIe~~K~ 245 (258)
T COG2512 197 EKEILDLIRERGGRITQAELRRAL----GLSKTTVSRILRRLEKRGLIEKEKK 245 (258)
T ss_pred HHHHHHHHHHhCCEEeHHHHHHhh----CCChHHHHHHHHHHHhCCceEEEEe
Confidence 44556666554 569999999999 9999999999999999999998874
No 442
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=67.09 E-value=11 Score=27.85 Aligned_cols=34 Identities=15% Similarity=0.344 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCceeeecccccCceEEcChhchhhhcC
Q 021707 40 LQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTD 77 (309)
Q Consensus 40 l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~ 77 (309)
+.=-+-.|...|+++... .|.|++|+.|+.++..
T Consensus 57 i~Wa~~~L~~aGli~~~~----rG~~~iT~~G~~~l~~ 90 (92)
T PF14338_consen 57 IRWARSYLKKAGLIERPK----RGIWRITEKGRKALAE 90 (92)
T ss_pred HHHHHHHHHHCCCccCCC----CCceEECHhHHHHHhh
Confidence 333456699999998876 6899999999876654
No 443
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=66.85 E-value=7.8 Score=34.61 Aligned_cols=45 Identities=11% Similarity=0.049 Sum_probs=39.4
Q ss_pred hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
-+.+.+-.++.+++.|||+.+ ++++.-++|=|..|...|++.+.-
T Consensus 9 ~Il~~L~~~~~v~v~eLa~~l----~VS~~TIRRDL~~Le~~g~l~r~~ 53 (256)
T PRK10434 9 AILEYLQKQGKTSVEELAQYF----DTTGTTIRKDLVILEHAGTVIRTY 53 (256)
T ss_pred HHHHHHHHcCCEEHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEEEE
Confidence 345555567899999999999 999999999999999999998875
No 444
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=66.00 E-value=11 Score=30.00 Aligned_cols=86 Identities=22% Similarity=0.193 Sum_probs=45.3
Q ss_pred cceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCCCCceEEeCCCCCCC----CCCceeeehhhhhcCChhH
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSI----PAANAIFMKWVLATWTDDE 236 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~~----p~~D~i~~~~vlh~~~d~~ 236 (309)
..++++||-|.=.-....++.+ +.. +++.|..+. .++ .++.++.-|+|+|- ..+|+|+.-+. +.|
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~-G~d-V~~tDi~~~--~a~--~g~~~v~DDif~P~l~iY~~a~lIYSiRP-----P~E 82 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER-GFD-VIATDINPR--KAP--EGVNFVVDDIFNPNLEIYEGADLIYSIRP-----PPE 82 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH-S-E-EEEE-SS-S--------STTEE---SSS--HHHHTTEEEEEEES-------TT
T ss_pred CCcEEEECcCCCHHHHHHHHHc-CCc-EEEEECccc--ccc--cCcceeeecccCCCHHHhcCCcEEEEeCC-----ChH
Confidence 3599999988766555555554 366 899998433 222 78999999999872 23599988774 344
Q ss_pred HHHHHHHHHHhcCCCcEEEEecc
Q 021707 237 CKLIMENCYKALLAGGKLIACEP 259 (309)
Q Consensus 237 ~~~iL~~~~~aL~pgG~l~i~e~ 259 (309)
...-+.++++... .-++|.-.
T Consensus 83 l~~~il~lA~~v~--adlii~pL 103 (127)
T PF03686_consen 83 LQPPILELAKKVG--ADLIIRPL 103 (127)
T ss_dssp SHHHHHHHHHHHT---EEEEE-B
T ss_pred HhHHHHHHHHHhC--CCEEEECC
Confidence 4555555665543 55666633
No 445
>PRK00082 hrcA heat-inducible transcription repressor; Provisional
Probab=65.87 E-value=8.4 Score=36.02 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=41.3
Q ss_pred hhhhhhhhhhcC-CCCCCHHHHHHH--hCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 5 ECRDGRKKVRLA-NTPLSVSQILTC--ILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 5 ~~~~g~~~~~l~-~~~~t~~eLA~~--~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
+.+..+++..+. .+|.+..+||+. . ++++.-+++-|..|...|++.+.-
T Consensus 10 ~Il~~IV~~yi~~~~pv~s~~l~~~~~l----~~S~aTIR~dm~~Le~~G~l~~~h 61 (339)
T PRK00082 10 EILRAIVEDYIATGEPVGSKTLSKRYGL----GVSSATIRNDMADLEELGLLEKPH 61 (339)
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHhCC----CCChHHHHHHHHHHHhCCCcCCCc
Confidence 345566777775 579999999977 8 999999999999999999999764
No 446
>PF11994 DUF3489: Protein of unknown function (DUF3489); InterPro: IPR021880 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 84 to 211 amino acids in length. This protein has a single completely conserved residue W that may be functionally important.
Probab=65.77 E-value=22 Score=25.23 Aligned_cols=42 Identities=12% Similarity=0.089 Sum_probs=33.0
Q ss_pred hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHH--HcCCceee
Q 021707 10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLL--TSYGVFSE 55 (309)
Q Consensus 10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L--~~~gll~~ 55 (309)
+++++-..+.+|++||++.+ |+.+..++-.|--+ -.+|+-..
T Consensus 15 li~mL~rp~GATi~ei~~at----GWq~HTvRgalsg~~kKklGl~i~ 58 (72)
T PF11994_consen 15 LIAMLRRPEGATIAEICEAT----GWQPHTVRGALSGLLKKKLGLTIT 58 (72)
T ss_pred HHHHHcCCCCCCHHHHHHhh----CCchhhHHHHHHHHHHHhcCcEEE
Confidence 45556567899999999999 99999888888777 56666543
No 447
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=65.46 E-value=19 Score=27.10 Aligned_cols=63 Identities=22% Similarity=0.173 Sum_probs=45.4
Q ss_pred cCCCCCCHHHHHHHhCcC----CCCCcchHHHHHHHHHcCCceeeec--c--cccCceEEcChhchhhhcC
Q 021707 15 LANTPLSVSQILTCILPS----GGGDAENLQCILRLLTSYGVFSEHR--E--FRGERKYSLTEIGKSLVTD 77 (309)
Q Consensus 15 l~~~~~t~~eLA~~~~~~----~g~~~~~l~rlL~~L~~~gll~~~~--~--~~~~~~y~~t~~~~~l~~~ 77 (309)
|.++|.+--||.+.+... -.+++..+.+.|+-|...|+++... . +...-.|++|+.|+.+...
T Consensus 13 L~~~~~~GYei~~~l~~~~~~~~~i~~gtlY~~L~rLe~~GlI~~~~~~~~~~~~rk~y~iT~~Gr~~l~~ 83 (100)
T TIGR03433 13 LSLGPLHGYGIAQRIQQISEDVLQVEEGSLYPALHRLERRGWIAAEWGESENNRRAKFYRLTAAGRKQLAA 83 (100)
T ss_pred HhcCCCCHHHHHHHHHHHcCCccccCCCcHHHHHHHHHHCCCeEEEeeecCCCCCceEEEECHHHHHHHHH
Confidence 356889988888886111 1577889999999999999999742 1 1112369999999766653
No 448
>PRK09954 putative kinase; Provisional
Probab=65.40 E-value=8.2 Score=36.10 Aligned_cols=43 Identities=9% Similarity=0.006 Sum_probs=38.3
Q ss_pred hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceee
Q 021707 9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSE 55 (309)
Q Consensus 9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~ 55 (309)
-+.+.+..++++|..|||+.+ +++...+++.++.|...|++..
T Consensus 7 ~il~~l~~~~~~s~~~la~~l----~~s~~~v~~~i~~L~~~g~i~~ 49 (362)
T PRK09954 7 EILAILRRNPLIQQNEIADIL----QISRSRVAAHIMDLMRKGRIKG 49 (362)
T ss_pred HHHHHHHHCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCcCC
Confidence 356667678899999999999 9999999999999999999853
No 449
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=65.24 E-value=6.2 Score=38.16 Aligned_cols=105 Identities=13% Similarity=-0.053 Sum_probs=64.9
Q ss_pred CcceEEEecCCccHHHHHHHHhcCCCc-eEEEeech-hHHhhCCCC-------CCceEEe---CCCCCCCC--CC-ceee
Q 021707 160 GVKRLVDVGGSAGDCLRMILQKHHFIC-EGINFDLP-EVVGEAPSI-------PGVTHIG---GDMFNSIP--AA-NAIF 224 (309)
Q Consensus 160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~~D~p-~~~~~a~~~-------~ri~~~~---~d~~~~~p--~~-D~i~ 224 (309)
.+..+.|+|.|.|.-..++....++.. ..+.+|.. .+....... ....... .+-+-+.+ +. |+++
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 357899999998887777777777643 26778872 333333221 1111111 12222222 23 9999
Q ss_pred ehhhhhcCChh-HHHHHHHHH-HHhcCCCcEEEEeccccCCC
Q 021707 225 MKWVLATWTDD-ECKLIMENC-YKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 225 ~~~vlh~~~d~-~~~~iL~~~-~~aL~pgG~l~i~e~~~~~~ 264 (309)
+.|++|.++.. ....+.++. ++..++|+.++|+|.-.+-.
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g 321 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMG 321 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccc
Confidence 99999998644 344555555 45568999999999766554
No 450
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=65.19 E-value=7.9 Score=23.90 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHc
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTS 49 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~ 49 (309)
..+.|+++||+.+ |.++..+.|..+....
T Consensus 6 ~~~~~l~~iA~~~----g~S~~~f~r~Fk~~~g 34 (42)
T PF00165_consen 6 QQKLTLEDIAEQA----GFSPSYFSRLFKKETG 34 (42)
T ss_dssp -SS--HHHHHHHH----TS-HHHHHHHHHHHTS
T ss_pred cCCCCHHHHHHHH----CCCHHHHHHHHHHHHC
Confidence 3569999999999 9999999999887654
No 451
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=65.06 E-value=11 Score=32.22 Aligned_cols=47 Identities=21% Similarity=0.295 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG 71 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~ 71 (309)
+..++-.+||+.. |++...++.-|..|...|+|+..+ ...+..++.+
T Consensus 32 G~~L~e~~La~~l----gVSRtpVReAL~~L~~eGlv~~~~----~~G~~V~~~~ 78 (212)
T TIGR03338 32 GAKLNESDIAARL----GVSRGPVREAFRALEEAGLVRNEK----NRGVFVREIS 78 (212)
T ss_pred CCEecHHHHHHHh----CCChHHHHHHHHHHHHCCCEEEec----CCCeEEecCC
Confidence 4577999999999 999999999999999999999876 3345555444
No 452
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=64.96 E-value=10 Score=26.95 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
..+++..+|+..+ |.+++.+-..++.|...|++.+..
T Consensus 16 ~~Gi~q~~L~~~~----~~D~r~i~~~~k~L~~~gLI~k~~ 52 (75)
T PF04182_consen 16 YNGITQSDLSKLL----GIDPRSIFYRLKKLEKKGLIVKQS 52 (75)
T ss_pred CCCEehhHHHHHh----CCCchHHHHHHHHHHHCCCEEEEE
Confidence 4578999999999 999999999999999999999875
No 453
>PF05491 RuvB_C: Holliday junction DNA helicase ruvB C-terminus; InterPro: IPR008823 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the C-terminal region of the proteins; it is thought to be a helicase DNA-binding domain.; GO: 0003677 DNA binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3PFI_B 1IXR_C 1HQC_B 1IXS_B 1IN8_A 1IN4_A 1IN5_A 1J7K_A 1IN6_A 1IN7_A.
Probab=64.69 E-value=10 Score=27.27 Aligned_cols=47 Identities=15% Similarity=0.330 Sum_probs=35.4
Q ss_pred CCCCCCHHHHHHHhCcCCCCCcchHHHHHHH-HHcCCceeeecccccCceEEcChhc
Q 021707 16 ANTPLSVSQILTCILPSGGGDAENLQCILRL-LTSYGVFSEHREFRGERKYSLTEIG 71 (309)
Q Consensus 16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~-L~~~gll~~~~~~~~~~~y~~t~~~ 71 (309)
.++|..++.||..+ |.+++.+..+.+- |...||+.+.. .|+ .+|+.+
T Consensus 22 ~ggPvGl~tlA~~l----~ed~~Tie~v~EPyLiq~G~I~RT~----rGR-~~T~~a 69 (76)
T PF05491_consen 22 KGGPVGLDTLAAAL----GEDKETIEDVIEPYLIQIGFIQRTP----RGR-VATPKA 69 (76)
T ss_dssp TTS-B-HHHHHHHT----TS-HHHHHHTTHHHHHHTTSEEEET----TEE-EE-HHH
T ss_pred CCCCeeHHHHHHHH----CCCHhHHHHHhhHHHHHhhhHhhCc----cHH-HhHHHH
Confidence 57899999999999 9999888877764 99999999996 455 556555
No 454
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=64.48 E-value=11 Score=25.63 Aligned_cols=47 Identities=28% Similarity=0.325 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHhCcCCCCCc-chHHHHHHHHHcCCceeeecccccCceEEcChhch
Q 021707 17 NTPLSVSQILTCILPSGGGDA-ENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGK 72 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~-~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~ 72 (309)
...++.+++.++. |.+. ......+..+...|+++.+ ++.+++|+.|.
T Consensus 18 ~~Gi~~~~~~~~~----g~~~~~~~~~~l~~l~~~Gll~~~-----~~~l~lT~~G~ 65 (66)
T PF06969_consen 18 NEGIDLSEFEQRF----GIDFAEEFQKELEELQEDGLLEID-----GGRLRLTEKGR 65 (66)
T ss_dssp HSEEEHHHHHHHT----T--THHH-HHHHHHHHHTTSEEE------SSEEEE-TTTG
T ss_pred HCCcCHHHHHHHH----CcCHHHHHHHHHHHHHHCCCEEEe-----CCEEEECcccC
Confidence 4678999999999 8874 4447889999999999998 58999998764
No 455
>PF14502 HTH_41: Helix-turn-helix domain
Probab=64.45 E-value=15 Score=23.82 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=32.4
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 19 PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 19 ~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
-.|++|+++++ ++....++.-|..|...|.+....
T Consensus 6 i~tI~e~~~~~----~vs~GtiQ~Alk~Le~~gaI~Le~ 40 (48)
T PF14502_consen 6 IPTISEYSEKF----GVSRGTIQNALKFLEENGAIKLES 40 (48)
T ss_pred cCCHHHHHHHh----CcchhHHHHHHHHHHHCCcEEeee
Confidence 35899999999 999999999999999999998876
No 456
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=64.19 E-value=15 Score=30.57 Aligned_cols=54 Identities=11% Similarity=0.073 Sum_probs=40.7
Q ss_pred chhhhhhhhhhcC-CCCCCHHHHHHHhCcCC-CCCcchHHHHHHHHHcCCceeeec
Q 021707 4 NECRDGRKKVRLA-NTPLSVSQILTCILPSG-GGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 4 ~~~~~g~~~~~l~-~~~~t~~eLA~~~~~~~-g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
|.-+..+++.+.. +++.|++||.+.+.... +++..-+.|.|+.|+..|+|.+..
T Consensus 25 T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~~ 80 (169)
T PRK11639 25 TPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKVE 80 (169)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 3345566666654 47999999999982221 456788999999999999999875
No 457
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=64.18 E-value=7.2 Score=35.41 Aligned_cols=38 Identities=16% Similarity=0.418 Sum_probs=34.5
Q ss_pred CCCCCCHHHHHHHhCcCCCCCcchHHHHHH-HHHcCCceeeec
Q 021707 16 ANTPLSVSQILTCILPSGGGDAENLQCILR-LLTSYGVFSEHR 57 (309)
Q Consensus 16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~-~L~~~gll~~~~ 57 (309)
.+++.+++++|+.+ |.++..+.++++ .|+..|++...+
T Consensus 252 ~~~~~~~~~ia~~l----g~~~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 252 QGGPVGLKTLAAAL----GEDADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred CCCcccHHHHHHHh----CCCcchHHHhhhHHHHHcCCcccCC
Confidence 56789999999999 999999999999 699999998664
No 458
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=63.56 E-value=7.7 Score=29.22 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH 56 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~ 56 (309)
+..+++.+|++.+ ++++..++..|+.|...|++-..
T Consensus 63 ~~Gv~v~~I~~~l----~~~~~~v~~al~~L~~eG~IYsT 98 (102)
T PF08784_consen 63 EEGVHVDEIAQQL----GMSENEVRKALDFLSNEGHIYST 98 (102)
T ss_dssp TTTEEHHHHHHHS----TS-HHHHHHHHHHHHHTTSEEES
T ss_pred CCcccHHHHHHHh----CcCHHHHHHHHHHHHhCCeEecc
Confidence 5689999999999 99999999999999999998654
No 459
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=63.38 E-value=7.6 Score=30.11 Aligned_cols=64 Identities=19% Similarity=0.173 Sum_probs=43.3
Q ss_pred hhhhhhhhhcC-CCCCCHHHHHHHhCcCC-CCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707 6 CRDGRKKVRLA-NTPLSVSQILTCILPSG-GGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE 69 (309)
Q Consensus 6 ~~~g~~~~~l~-~~~~t~~eLA~~~~~~~-g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~ 69 (309)
-+..+++.+.. +++.|++||.+.+.... .++..-+.|.|+.|...|++.+...+.+...|....
T Consensus 9 ~R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~~~~~~~~~Y~~~~ 74 (120)
T PF01475_consen 9 QRLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKIEFGDGESRYELST 74 (120)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEETTSEEEEEESS
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEEEcCCCcceEeecC
Confidence 34555665554 46999999999982221 455567999999999999999876321123676664
No 460
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=63.37 E-value=11 Score=32.68 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=36.4
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcC
Q 021707 19 PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLT 68 (309)
Q Consensus 19 ~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t 68 (309)
+.|-++||+.+ |+..+.+.|.|..|...|+++..+ +++.+.
T Consensus 169 ~~t~~~lA~~l----G~sretvsR~L~~L~~~G~I~~~~-----~~i~I~ 209 (226)
T PRK10402 169 HEKHTQAAEYL----GVSYRHLLYVLAQFIQDGYLKKSK-----RGYLIK 209 (226)
T ss_pred cchHHHHHHHH----CCcHHHHHHHHHHHHHCCCEEeeC-----CEEEEe
Confidence 56889999999 999999999999999999999884 566654
No 461
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=63.35 E-value=42 Score=27.51 Aligned_cols=63 Identities=21% Similarity=0.170 Sum_probs=36.3
Q ss_pred cceEEEecCCccHH--HHHHHHhcCCCceEEEeechhHHhhCCCCCCceEEeCCCCCC-CCCCceeeehh
Q 021707 161 VKRLVDVGGSAGDC--LRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNS-IPAANAIFMKW 227 (309)
Q Consensus 161 ~~~vlDvG~G~G~~--~~~l~~~~p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~-~p~~D~i~~~~ 227 (309)
+.+|+=||||.=.. +..|++. +.+ +++++ |+..+...+.+.+++....+.+. +..+|+++...
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~--ga~-V~VIs-p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT 78 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDT--GAF-VTVVS-PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAAT 78 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCE-EEEEc-CccCHHHHhccCcEEEecccChhcCCCceEEEECC
Confidence 57899999985443 2334443 445 66765 43333333345677766555443 44568877753
No 462
>PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.
Probab=62.83 E-value=11 Score=29.43 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
..|.|++|||..+ ++|..-++-++.-|...|++....
T Consensus 53 ~~~~SVAEiAA~L----~lPlgVvrVLvsDL~~~G~v~v~~ 89 (114)
T PF05331_consen 53 RRPLSVAEIAARL----GLPLGVVRVLVSDLADAGLVRVRA 89 (114)
T ss_pred CCCccHHHHHHhh----CCCchhhhhhHHHHHhCCCEEEeC
Confidence 3599999999999 999999999999999999999875
No 463
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=62.49 E-value=40 Score=34.29 Aligned_cols=87 Identities=15% Similarity=0.128 Sum_probs=53.9
Q ss_pred ceEEEecCC-ccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC--C-----CCCceeeehhhhhcC
Q 021707 162 KRLVDVGGS-AGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS--I-----PAANAIFMKWVLATW 232 (309)
Q Consensus 162 ~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~--~-----p~~D~i~~~~vlh~~ 232 (309)
.+|+=+|+| .|....+.+++. +.+ ++++|. ++.++.+++ .....+.||..++ + ..+|+++...-
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~-g~~-vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~---- 473 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS-GVK-MTVLDHDPDHIETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINAID---- 473 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC-CCC-EEEEECCHHHHHHHHh-cCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC----
Confidence 578878776 344444444442 566 899998 666776654 4678899998765 2 23576665441
Q ss_pred ChhHHHHHHHHHHHhcCCCcEEEE
Q 021707 233 TDDECKLIMENCYKALLAGGKLIA 256 (309)
Q Consensus 233 ~d~~~~~iL~~~~~aL~pgG~l~i 256 (309)
+++.+..+...+++ +.|+-+++.
T Consensus 474 d~~~n~~i~~~ar~-~~p~~~iia 496 (621)
T PRK03562 474 DPQTSLQLVELVKE-HFPHLQIIA 496 (621)
T ss_pred CHHHHHHHHHHHHH-hCCCCeEEE
Confidence 34555555555444 567766655
No 464
>PRK08507 prephenate dehydrogenase; Validated
Probab=62.34 E-value=23 Score=31.78 Aligned_cols=81 Identities=12% Similarity=0.065 Sum_probs=46.0
Q ss_pred eEEEecCCc--cHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCCCCCCceeeehhhhhcCChhHHHH
Q 021707 163 RLVDVGGSA--GDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKL 239 (309)
Q Consensus 163 ~vlDvG~G~--G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~~p~~D~i~~~~vlh~~~d~~~~~ 239 (309)
+|.=||+|. |.++..+.+.....+ +++.|. +...+.+.+..-+.. ..+. +....+|+|++.- |+....+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~-v~~~d~~~~~~~~~~~~g~~~~-~~~~-~~~~~aD~Vilav-----p~~~~~~ 73 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISK-VYGYDHNELHLKKALELGLVDE-IVSF-EELKKCDVIFLAI-----PVDAIIE 73 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCE-EEEEcCCHHHHHHHHHCCCCcc-cCCH-HHHhcCCEEEEeC-----cHHHHHH
Confidence 456677764 445555655544446 888887 444444433221111 1121 1122368888765 5566778
Q ss_pred HHHHHHHhcCCCc
Q 021707 240 IMENCYKALLAGG 252 (309)
Q Consensus 240 iL~~~~~aL~pgG 252 (309)
+++++.. ++|+.
T Consensus 74 ~~~~l~~-l~~~~ 85 (275)
T PRK08507 74 ILPKLLD-IKENT 85 (275)
T ss_pred HHHHHhc-cCCCC
Confidence 8888888 87775
No 465
>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.
Probab=62.32 E-value=24 Score=27.02 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEE
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYS 66 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~ 66 (309)
-.-+|...||+++ +++--..++.|+.|...|++......+....|.
T Consensus 57 ~K~ITp~~lserl----kI~~SlAr~~Lr~L~~kG~Ik~V~k~~~~~IYt 102 (105)
T PF03297_consen 57 MKLITPSVLSERL----KINGSLARKALRELESKGLIKPVSKHHRQRIYT 102 (105)
T ss_dssp SSCECHHHHHHHH----CCSCHHHHHHHHHHHHCCSSEEEECCTTCEEEE
T ss_pred CcEeeHHHHHHhH----hhHHHHHHHHHHHHHHCCCEEEEeccCCeEEEe
Confidence 3568999999999 999999999999999999998775333334454
No 466
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=61.79 E-value=5.5 Score=25.27 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=20.9
Q ss_pred hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHH
Q 021707 10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILR 45 (309)
Q Consensus 10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~ 45 (309)
+++++ .+| .|+.+||+.+ |++..-+.|+|.
T Consensus 14 i~~l~-~~G-~si~~IA~~~----gvsr~TvyR~l~ 43 (45)
T PF02796_consen 14 IKELY-AEG-MSIAEIAKQF----GVSRSTVYRYLN 43 (45)
T ss_dssp HHHHH-HTT---HHHHHHHT----TS-HHHHHHHHC
T ss_pred HHHHH-HCC-CCHHHHHHHH----CcCHHHHHHHHh
Confidence 34433 455 9999999999 999998888874
No 467
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=61.70 E-value=14 Score=32.10 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhch
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGK 72 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~ 72 (309)
+.+++-.+||+.. |++...++.-|..|.+.|+|+..+ ...+..++++.
T Consensus 37 G~~l~e~~La~~~----gvSrtPVReAL~rL~~eGlv~~~p----~rG~~V~~~~~ 84 (230)
T COG1802 37 GERLSEEELAEEL----GVSRTPVREALRRLEAEGLVEIEP----NRGAFVAPLSL 84 (230)
T ss_pred CCCccHHHHHHHh----CCCCccHHHHHHHHHHCCCeEecC----CCCCeeCCCCH
Confidence 4689999999999 999999999999999999999986 44566666553
No 468
>TIGR01714 phage_rep_org_N phage replisome organizer, putative, N-terminal region. This model represents the N-terminal domain of a small family of phage proteins. The protein contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The region covered by this model is N-terminal to the low-complexity region.
Probab=61.51 E-value=19 Score=28.33 Aligned_cols=46 Identities=15% Similarity=0.287 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707 18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG 71 (309)
Q Consensus 18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~ 71 (309)
-|-|.++||..+ +-+...++.-|..+...|+++... +|.|.++...
T Consensus 50 ipy~~e~LA~~~----~~~~~~V~~Al~~f~k~glIe~~d----~g~i~i~~~~ 95 (119)
T TIGR01714 50 APYNAEMLATMF----NRNVGDIRITLQTLESLGLIEKKN----NGDIFLENWE 95 (119)
T ss_pred CCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEEec----CCcEEehhHH
Confidence 589999999999 999999999999999999999985 6778887654
No 469
>PF13814 Replic_Relax: Replication-relaxation
Probab=61.49 E-value=19 Score=30.08 Aligned_cols=56 Identities=21% Similarity=0.228 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHhCcCCCCCcc---hHHHHHHHHHcCCceeeecc------cccCceEEcChhchhhhc
Q 021707 17 NTPLSVSQILTCILPSGGGDAE---NLQCILRLLTSYGVFSEHRE------FRGERKYSLTEIGKSLVT 76 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~---~l~rlL~~L~~~gll~~~~~------~~~~~~y~~t~~~~~l~~ 76 (309)
-..+|.++|+... ..+.. .+++.|.-|...|+|..... +...-.|.+|+.|..++.
T Consensus 7 ~r~lt~~Qi~~l~----~~~~~~~~~~~rrL~~L~~~glv~~~~~~~~~~~g~~~~vy~Lt~~G~~~l~ 71 (191)
T PF13814_consen 7 HRFLTTDQIARLL----FPSSKSERTARRRLKRLRELGLVDRFRRRVGARGGSQPYVYYLTPAGARLLA 71 (191)
T ss_pred hcCcCHHHHHHHH----cCCCcchHHHHHHHHHHhhCCcEEeecccccccCCCcceEEEECHHHHHHHH
Confidence 4678999999999 66654 89999999999999987752 112357999999976655
No 470
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=61.45 E-value=19 Score=29.25 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=42.1
Q ss_pred chhhhhhhhhhcC-CCCCCHHHHHHHhCcCC-CCCcchHHHHHHHHHcCCceeeec
Q 021707 4 NECRDGRKKVRLA-NTPLSVSQILTCILPSG-GGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 4 ~~~~~g~~~~~l~-~~~~t~~eLA~~~~~~~-g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
|.-++.+++.+.. .++.|+++|=..+.... +++..-+.|.|+.|...|+|.+..
T Consensus 20 T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~~~ 75 (145)
T COG0735 20 TPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHRLE 75 (145)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEEEE
Confidence 4456777887774 46899999998882111 566789999999999999999875
No 471
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=61.30 E-value=9.9 Score=33.73 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=24.8
Q ss_pred cceEEEecCCccHHHHHHHHhcCCC--------ceEEEeech
Q 021707 161 VKRLVDVGGSAGDCLRMILQKHHFI--------CEGINFDLP 194 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~p~~--------~~~~~~D~p 194 (309)
..+|+++|+|+|.++..+++..... + .++++.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~-y~ivE~S 59 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLR-YHIVEIS 59 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCE-EEEE-TT
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcce-EEEEcCC
Confidence 4799999999999999998865443 5 8888873
No 472
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=61.18 E-value=28 Score=31.31 Aligned_cols=99 Identities=13% Similarity=0.027 Sum_probs=59.4
Q ss_pred eEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC-----CCCCceeeehhhhhcCCh--
Q 021707 163 RLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS-----IPAANAIFMKWVLATWTD-- 234 (309)
Q Consensus 163 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~-----~p~~D~i~~~~vlh~~~d-- 234 (309)
+++|+-||.|.+...+.+.. .+.+..+|. +..++..+.+-.-.++.+|+.+. .+..|+++....+..|+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag 79 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAG 79 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHh
Confidence 68999999999999988774 442577887 55555444432212566777653 123499997766554431
Q ss_pred ------hHHHHHHHHHHHhcC-CCcEEEEeccccCC
Q 021707 235 ------DECKLIMENCYKALL-AGGKLIACEPVLLD 263 (309)
Q Consensus 235 ------~~~~~iL~~~~~aL~-pgG~l~i~e~~~~~ 263 (309)
+..-.++....+.++ -.-++++.|.+..-
T Consensus 80 ~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~ 115 (275)
T cd00315 80 KRKGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGL 115 (275)
T ss_pred hcCCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcch
Confidence 122234444433332 12458899988664
No 473
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=61.15 E-value=37 Score=31.57 Aligned_cols=98 Identities=12% Similarity=0.063 Sum_probs=62.0
Q ss_pred CCCCcceEEEecCC-ccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--CCceEEeCCC-----CCC----CCC--Cc
Q 021707 157 GFKGVKRLVDVGGS-AGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--PGVTHIGGDM-----FNS----IPA--AN 221 (309)
Q Consensus 157 ~~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--~ri~~~~~d~-----~~~----~p~--~D 221 (309)
++....+||-+|+| .|..+...++.+--.+ +++.|+ +.-++.|++. .-+......- .+. ... .|
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~-VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d 244 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASD-VVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPD 244 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCc-EEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCC
Confidence 35668899999999 6888888888887777 999998 7778888763 1111111110 000 110 24
Q ss_pred eeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 222 AIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 222 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
+.+-...+ ...++.+..+++++|.+++...-.+.
T Consensus 245 ~~~dCsG~--------~~~~~aai~a~r~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 245 VTFDCSGA--------EVTIRAAIKATRSGGTVVLVGMGAEE 278 (354)
T ss_pred eEEEccCc--------hHHHHHHHHHhccCCEEEEeccCCCc
Confidence 44422222 24566778899999998888755444
No 474
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=61.04 E-value=9.8 Score=34.76 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=48.0
Q ss_pred CCceEEeCCCCCCC---CC--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707 204 PGVTHIGGDMFNSI---PA--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV 260 (309)
Q Consensus 204 ~ri~~~~~d~~~~~---p~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~ 260 (309)
.||.++.+|+.+.. |. .|.|++..+-.-.+|.+.-.++.++.+.+.||.++++-...
T Consensus 307 ~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRtaa 368 (414)
T COG5379 307 RRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRTAA 368 (414)
T ss_pred hheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEeccc
Confidence 78999999998752 22 39999999988889999999999999999999998876433
No 475
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=60.94 E-value=19 Score=32.28 Aligned_cols=65 Identities=11% Similarity=0.137 Sum_probs=51.5
Q ss_pred hhhhhhhhhhcC-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhh
Q 021707 5 ECRDGRKKVRLA-NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLV 75 (309)
Q Consensus 5 ~~~~g~~~~~l~-~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~ 75 (309)
+.+..++++.-. ++++--+|+|+.+ +-+|..++-.+..|-++|+++-..+ ..|.|..|-.+...+
T Consensus 10 eIL~aLi~LY~~~~r~IKgeeIA~~l----~rnpGTVRNqmq~LkaLgLVegvpG--PkGGY~PT~kAYe~L 75 (294)
T COG2524 10 EILQALINLYRRKKRPIKGEEIAEVL----NRNPGTVRNQMQSLKALGLVEGVPG--PKGGYKPTSKAYEAL 75 (294)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHH----ccCcchHHHHHHHHHhcCccccccC--CCCCccccHHHHHHh
Confidence 456677777653 5699999999999 9999999999999999999987652 146798887664333
No 476
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=60.83 E-value=17 Score=31.41 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
+..++..+||+.. |++...++.-|+.|...|+|+..+
T Consensus 32 G~~L~e~~La~~l----gVSRtpVREAL~~L~~eGLV~~~~ 68 (221)
T PRK11414 32 GARLITKNLAEQL----GMSITPVREALLRLVSVNALSVAP 68 (221)
T ss_pred CCccCHHHHHHHH----CCCchhHHHHHHHHHHCCCEEecC
Confidence 4577899999999 999999999999999999999875
No 477
>PF11972 HTH_13: HTH DNA binding domain; InterPro: IPR021068 The proteins in this entry have not been characterised. They contain a C-terminal helix-turn-helix DNA binding domain.
Probab=60.45 E-value=16 Score=24.37 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=35.2
Q ss_pred hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEc
Q 021707 9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSL 67 (309)
Q Consensus 9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~ 67 (309)
.++|+++..--.|+..+|+.+ ++++....++++-| |+-+..+ .++|+.
T Consensus 3 ~Lidll~~~P~Vsa~mva~~L----~vT~~~A~~li~eL---g~rEiTG----r~R~Ra 50 (54)
T PF11972_consen 3 RLIDLLLSRPLVSAPMVAKEL----GVTPQAAQRLIAEL---GLREITG----RGRYRA 50 (54)
T ss_pred HHHHHHHhCccccHHHHHHHh----CCCHHHHHHHHHHh---hceeecC----Ccccch
Confidence 467777777778999999999 99999999987654 4433333 566663
No 478
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=60.07 E-value=5.5 Score=33.78 Aligned_cols=44 Identities=7% Similarity=-0.055 Sum_probs=38.7
Q ss_pred hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707 9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH 56 (309)
Q Consensus 9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~ 56 (309)
-+.+.+..++.+++.+||+.+ ++++.-++|=|..|...|++.+.
T Consensus 11 ~Il~~l~~~~~~~~~~La~~~----~vS~~TiRRDl~~L~~~g~~~r~ 54 (185)
T PRK04424 11 ALQELIEENPFITDEELAEKF----GVSIQTIRLDRMELGIPELRERI 54 (185)
T ss_pred HHHHHHHHCCCEEHHHHHHHH----CcCHHHHHHHHHHHhcchHHHHH
Confidence 345555568999999999999 99999999999999999999865
No 479
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=59.95 E-value=44 Score=30.81 Aligned_cols=93 Identities=11% Similarity=-0.028 Sum_probs=52.8
Q ss_pred CCcceEEEecCC-ccHHHHHHHHh-cCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCCCCCCceeeehhhhhcCChh
Q 021707 159 KGVKRLVDVGGS-AGDCLRMILQK-HHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDD 235 (309)
Q Consensus 159 ~~~~~vlDvG~G-~G~~~~~l~~~-~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~~p~~D~i~~~~vlh~~~d~ 235 (309)
....+|+-+|+| .|.++..++++ +...+ +++.|. ++-.+.+++.... ....+..+ ....|+++=.- ...
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~-vi~~~~~~~k~~~a~~~~~~-~~~~~~~~-~~g~d~viD~~-----G~~ 233 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESK-LVVFGKHQEKLDLFSFADET-YLIDDIPE-DLAVDHAFECV-----GGR 233 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCc-EEEEeCcHhHHHHHhhcCce-eehhhhhh-ccCCcEEEECC-----CCC
Confidence 446788888865 56677777775 55567 888887 4444444432211 11111111 11236665211 100
Q ss_pred HHHHHHHHHHHhcCCCcEEEEecc
Q 021707 236 ECKLIMENCYKALLAGGKLIACEP 259 (309)
Q Consensus 236 ~~~~iL~~~~~aL~pgG~l~i~e~ 259 (309)
.....+....+.|+++|+++++-.
T Consensus 234 ~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 234 GSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred ccHHHHHHHHHhCcCCcEEEEEee
Confidence 123567888889999999998764
No 480
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=59.79 E-value=12 Score=26.46 Aligned_cols=52 Identities=21% Similarity=0.215 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChh
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEI 70 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~ 70 (309)
.+++++.+|.+.+.. -|+++..++--|-=|+..|+++....+. .-.|++|+-
T Consensus 18 g~~i~~~~Li~ll~~-~Gv~e~avR~alsRl~~~G~L~~~r~Gr-~~~Y~Lt~~ 69 (70)
T PF07848_consen 18 GGWIWVASLIRLLAA-FGVSESAVRTALSRLVRRGWLESERRGR-RSYYRLTER 69 (70)
T ss_dssp TS-EEHHHHHHHHCC-TT--HHHHHHHHHHHHHTTSEEEECCCT-EEEEEE-HH
T ss_pred CCceeHHHHHHHHHH-cCCChHHHHHHHHHHHHcCceeeeecCc-cceEeeCCC
Confidence 456666666655511 2999999999999999999999987221 126999874
No 481
>KOG2165 consensus Anaphase-promoting complex (APC), subunit 2 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=59.36 E-value=16 Score=36.99 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707 16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG 71 (309)
Q Consensus 16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~ 71 (309)
....-|.+|||+.+ |++...++|-|.-....|++.+......++.|+..+..
T Consensus 613 ek~twt~eelse~l----~ip~~~lrrrL~fWi~~GvL~e~~~~s~tgt~T~iEse 664 (765)
T KOG2165|consen 613 EKNTWTLEELSESL----GIPVPALRRRLSFWIQKGVLREEPIISDTGTLTVIESE 664 (765)
T ss_pred CcccccHHHHHHHh----CCCHHHHHHHHHHHHHcCeeecCCCCCCCceeeecccc
Confidence 34578999999999 99999999999999999999988522225788888733
No 482
>TIGR00331 hrcA heat shock gene repressor HrcA. In Bacillus subtilis, hrcA is the first gene of the dnaK operon and so is itself a heat shock gene.
Probab=59.10 E-value=11 Score=35.22 Aligned_cols=49 Identities=10% Similarity=0.171 Sum_probs=42.3
Q ss_pred hhhhhhhhhhcC-CCCCCHHHHHHH--hCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 5 ECRDGRKKVRLA-NTPLSVSQILTC--ILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 5 ~~~~g~~~~~l~-~~~~t~~eLA~~--~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
+.+..+++..+. ++|.+..+|++. + ++++.-+++-|..|...|++.+.-
T Consensus 6 ~il~aIV~~~l~~~~pv~s~~l~~~~~~----~vS~aTiR~d~~~Le~~G~l~~~h 57 (337)
T TIGR00331 6 KILKAIVEEYIKTGQPVGSKTLLEKYNL----GLSSATIRNDMADLEDLGFIEKPH 57 (337)
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHhhcCC----CCChHHHHHHHHHHHHCCCccCCC
Confidence 345667777765 579999999999 8 999999999999999999998874
No 483
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=58.89 E-value=47 Score=28.54 Aligned_cols=65 Identities=12% Similarity=-0.026 Sum_probs=38.8
Q ss_pred cceEEEecCCccHHH-HHHHHhcCCCceEEEeec--hhHHhhCCCCCCceEEeCCCCCC-CCCCceeeehh
Q 021707 161 VKRLVDVGGSAGDCL-RMILQKHHFICEGINFDL--PEVVGEAPSIPGVTHIGGDMFNS-IPAANAIFMKW 227 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~-~~l~~~~p~~~~~~~~D~--p~~~~~a~~~~ri~~~~~d~~~~-~p~~D~i~~~~ 227 (309)
+.+||-||||.=... ...+..+ +.+ +++++. .+-+....+..+++++.+++... +..+|+|+...
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~-ga~-VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at 77 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA-GAQ-LRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAAT 77 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-CCE-EEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECC
Confidence 468999999864433 2233232 456 777765 22233333345899999887543 44467777654
No 484
>PRK12423 LexA repressor; Provisional
Probab=58.73 E-value=15 Score=31.46 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=31.7
Q ss_pred CCCHHHHHHHhCcCCCC-CcchHHHHHHHHHcCCceeeec
Q 021707 19 PLSVSQILTCILPSGGG-DAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 19 ~~t~~eLA~~~~~~~g~-~~~~l~rlL~~L~~~gll~~~~ 57 (309)
+-|..|||+.+ |+ ++..+++.|+.|...|+++...
T Consensus 25 ~Ps~~eia~~~----g~~s~~~v~~~l~~L~~~G~l~~~~ 60 (202)
T PRK12423 25 PPSLAEIAQAF----GFASRSVARKHVQALAEAGLIEVVP 60 (202)
T ss_pred CCCHHHHHHHh----CCCChHHHHHHHHHHHHCCCEEecC
Confidence 56999999999 95 6778999999999999999875
No 485
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=58.62 E-value=21 Score=33.07 Aligned_cols=90 Identities=14% Similarity=0.163 Sum_probs=56.5
Q ss_pred cceEEEecCC-ccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--CCceEEeCCCCC---CCCCCceeeehhhhhcCC
Q 021707 161 VKRLVDVGGS-AGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--PGVTHIGGDMFN---SIPAANAIFMKWVLATWT 233 (309)
Q Consensus 161 ~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--~ri~~~~~d~~~---~~p~~D~i~~~~vlh~~~ 233 (309)
..+|+-+|+| .|..+..++--. +.+ ++++|+ ..-+.+.... .|++..--+... ..+++|+++-.-.+ +
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~-Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLI---p 242 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GAD-VTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLI---P 242 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCe-eEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEe---c
Confidence 4688999998 566666666433 566 899998 3444444432 566666544332 25567888755444 3
Q ss_pred hhHHH-HHHHHHHHhcCCCcEEE
Q 021707 234 DDECK-LIMENCYKALLAGGKLI 255 (309)
Q Consensus 234 d~~~~-~iL~~~~~aL~pgG~l~ 255 (309)
-.++. -+.++..+.|+||+.|+
T Consensus 243 gakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 243 GAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred CCCCceehhHHHHHhcCCCcEEE
Confidence 22222 35566788999999665
No 486
>PRK10736 hypothetical protein; Provisional
Probab=58.27 E-value=18 Score=34.28 Aligned_cols=45 Identities=13% Similarity=0.038 Sum_probs=39.5
Q ss_pred CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcC
Q 021707 16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLT 68 (309)
Q Consensus 16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t 68 (309)
...|.++++|++.+ |++...+...|-.|.-.|++.+.. ++.|+.-
T Consensus 318 ~~~~~~iD~L~~~~----~l~~~~v~~~L~~LEl~G~v~~~~----g~~~~~~ 362 (374)
T PRK10736 318 GDEVTPVDVVAERA----GQPVPEVVTQLLELELAGWIAAVP----GGYVRLR 362 (374)
T ss_pred CCCCCCHHHHHHHH----CcCHHHHHHHHHHHHhCCcEEEcC----CcEEEEe
Confidence 45789999999999 999999999999999999999986 5666654
No 487
>PF08280 HTH_Mga: M protein trans-acting positive regulator (MGA) HTH domain; InterPro: IPR013199 Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions [].; PDB: 2WTE_A 3SQN_A.
Probab=57.89 E-value=7.1 Score=26.33 Aligned_cols=37 Identities=8% Similarity=0.041 Sum_probs=30.8
Q ss_pred hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHH
Q 021707 8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLT 48 (309)
Q Consensus 8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~ 48 (309)
+-+++.++.++..|..|||+.+ +++++.++.-+..|-
T Consensus 8 ~~Ll~~L~~~~~~~~~ela~~l----~~S~rti~~~i~~L~ 44 (59)
T PF08280_consen 8 LKLLELLLKNKWITLKELAKKL----NISERTIKNDINELN 44 (59)
T ss_dssp HHHHHHHHHHTSBBHHHHHHHC----TS-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHH----CCCHHHHHHHHHHHH
Confidence 3456777778899999999999 999999999888876
No 488
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=57.87 E-value=8.5 Score=29.72 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=39.0
Q ss_pred hhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 7 RDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 7 ~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
+.-+-+.+-..+++|+.||.+.++...+++..-+.-+|+-|+..|+|....
T Consensus 5 E~~IM~~lW~~~~~t~~eI~~~l~~~~~~~~sTv~t~L~rL~~Kg~l~~~~ 55 (115)
T PF03965_consen 5 ELEIMEILWESGEATVREIHEALPEERSWAYSTVQTLLNRLVEKGFLTREK 55 (115)
T ss_dssp HHHHHHHHHHHSSEEHHHHHHHHCTTSS--HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhccccchhHHHHHHHHHHhCCceeEee
Confidence 334444455567799999999994444677889999999999999999886
No 489
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=57.81 E-value=22 Score=26.19 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
..-+|...||+++ +++--..++.|+.|...|++....
T Consensus 39 ~K~ITps~lserl----kI~~SlAr~~Lr~L~~kG~Ik~V~ 75 (86)
T PRK09334 39 EKIVTPYTLASKY----GIKISVAKKVLRELEKRGVLVLYS 75 (86)
T ss_pred CcEEcHHHHHHHh----cchHHHHHHHHHHHHHCCCEEEEe
Confidence 3578999999999 999999999999999999997764
No 490
>COG4519 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.77 E-value=21 Score=25.81 Aligned_cols=49 Identities=16% Similarity=0.307 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc---ccCceEEcCh
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF---RGERKYSLTE 69 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~---~~~~~y~~t~ 69 (309)
....++-+|.+.+ |+|.+.++..+.+|-.+|++-+-.++ ..+|.|.+..
T Consensus 20 ~e~~nVP~lm~~T----GwPRRT~QDvikAlpglgi~l~FvQ~G~Rnn~GyYql~d 71 (95)
T COG4519 20 GETANVPELMAAT----GWPRRTAQDVIKALPGLGIVLEFVQEGARNNQGYYQLRD 71 (95)
T ss_pred cccCChHHHHHHc----CCchhHHHHHHHhCcCCCeEEEeeecccccCCCceEeee
Confidence 3478999999999 99999999999999999998654321 1245666653
No 491
>PF02981 FokI_N: Restriction endonuclease FokI, recognition domain; InterPro: IPR004234 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. Thie entry represents the type IIS restriction endonuclease FokI (3.1.21.4 from EC), which is a member of an unusual class of bipartite restriction enzymes that recognise a specific DNA sequence and cleave DNA nonspecifically a short distance away from that sequence []. FokI contains amino- and carboxy-terminal domains corresponding to the DNA-recognition and cleavage functions (IPR004233 from INTERPRO), respectively. The recognition domain is made of three smaller subdomains (D1, D2 and D3) which are evolutionarily related to the helix-turn-helix-containing DNA-binding domain of the catabolite gene activator protein CAP []. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 1FOK_A 2FOK_B.
Probab=57.66 E-value=11 Score=30.45 Aligned_cols=34 Identities=32% Similarity=0.497 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707 40 LQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT 76 (309)
Q Consensus 40 l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~ 76 (309)
..-+||-.+++||++.+. +.++|++|++|+.++.
T Consensus 109 Ad~flrwAvslgfl~~~~---~~Dtf~IT~lG~~~~~ 142 (145)
T PF02981_consen 109 ADGFLRWAVSLGFLDYDR---ETDTFSITELGKKYVK 142 (145)
T ss_dssp HHHHHHHHHHTTSEEEET---TTTEEEE-HHHHHHHH
T ss_pred ccceeeeeeeeCceeecc---CCCEEEeehhHHHHhh
Confidence 456899999999999987 4789999999987764
No 492
>PRK13239 alkylmercury lyase; Provisional
Probab=57.54 E-value=11 Score=32.47 Aligned_cols=39 Identities=15% Similarity=0.259 Sum_probs=31.9
Q ss_pred hhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHH
Q 021707 6 CRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLT 48 (309)
Q Consensus 6 ~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~ 48 (309)
-...++.++..+.|.|.++||+.+ |.+.+.++..|..|.
T Consensus 23 ~~~~llr~la~G~pvt~~~lA~~~----~~~~~~v~~~L~~l~ 61 (206)
T PRK13239 23 LLVPLLRLLAKGRPVSVTTLAAAL----GWPVEEVEAVLEAMP 61 (206)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHh----CCCHHHHHHHHHhCC
Confidence 345566766667899999999999 999988888888764
No 493
>PF08222 HTH_CodY: CodY helix-turn-helix domain; InterPro: IPR013198 This family consists of the C-terminal helix-turn-helix domain found in several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; PDB: 2B0L_C.
Probab=56.78 E-value=12 Score=25.25 Aligned_cols=37 Identities=27% Similarity=0.271 Sum_probs=30.1
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707 17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR 57 (309)
Q Consensus 17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~ 57 (309)
+|-++.+.+|++. |+...-+..-||-|.+.|+++...
T Consensus 2 eg~lvas~iAd~~----GiTRSvIVNALRKleSaGvIesrS 38 (61)
T PF08222_consen 2 EGRLVASKIADRV----GITRSVIVNALRKLESAGVIESRS 38 (61)
T ss_dssp EEEE-HHHHHHHH----T--HHHHHHHHHHHHHTTSEEEEE
T ss_pred CceehHHHHHHHh----CccHHHHHHHHHHHHhcCceeecc
Confidence 3456889999999 999999999999999999999765
No 494
>PLN02494 adenosylhomocysteinase
Probab=56.40 E-value=23 Score=34.66 Aligned_cols=101 Identities=11% Similarity=0.033 Sum_probs=57.6
Q ss_pred ccHHHHHhhcCCCCCcceEEEecCC-ccHHHHHHHHhcCCCceEEEeechh-HHhhCCCCCCceEEeCCCCCCCCCCcee
Q 021707 146 PFMTSVLDSYNGFKGVKRLVDVGGS-AGDCLRMILQKHHFICEGINFDLPE-VVGEAPSIPGVTHIGGDMFNSIPAANAI 223 (309)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~~D~p~-~~~~a~~~~ri~~~~~d~~~~~p~~D~i 223 (309)
+..+.+.+..+..-.+.+|+-+|+| .|......++.+ +.+ +++.|... ....+.. ..+.++ ++.+.++.+|++
T Consensus 239 S~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~-Ga~-VIV~e~dp~r~~eA~~-~G~~vv--~leEal~~ADVV 313 (477)
T PLN02494 239 SLPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA-GAR-VIVTEIDPICALQALM-EGYQVL--TLEDVVSEADIF 313 (477)
T ss_pred cHHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC-CCE-EEEEeCCchhhHHHHh-cCCeec--cHHHHHhhCCEE
Confidence 3445555554422346789999987 455555555555 667 89998733 2222221 222222 221224557998
Q ss_pred eehhhhhcCChhHHHHH-HHHHHHhcCCCcEEEEecc
Q 021707 224 FMKWVLATWTDDECKLI-MENCYKALLAGGKLIACEP 259 (309)
Q Consensus 224 ~~~~vlh~~~d~~~~~i-L~~~~~aL~pgG~l~i~e~ 259 (309)
+... . ...+ -+...+.|+||+.|+..-.
T Consensus 314 I~tT------G--t~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 314 VTTT------G--NKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred EECC------C--CccchHHHHHhcCCCCCEEEEcCC
Confidence 8621 1 1233 3778889999998887744
No 495
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=55.83 E-value=9.1 Score=31.29 Aligned_cols=89 Identities=12% Similarity=0.106 Sum_probs=49.0
Q ss_pred eEEEecCCccHHHHHHHHhcCCCceEEEeech-hHHhhCC---CC----------CCceEEeCCCCCCCCCCceeeehhh
Q 021707 163 RLVDVGGSAGDCLRMILQKHHFICEGINFDLP-EVVGEAP---SI----------PGVTHIGGDMFNSIPAANAIFMKWV 228 (309)
Q Consensus 163 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p-~~~~~a~---~~----------~ri~~~~~d~~~~~p~~D~i~~~~v 228 (309)
+|.-+|+|.+..+.+..-..-..+ +++...+ +.++..+ .+ .++.+ ..|+.+-...+|+|++.-
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~-V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~~ad~Iiiav- 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHE-VTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALEDADIIIIAV- 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEE-EEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHTT-SEEEE-S-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCE-EEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhCcccEEEecc-
Confidence 467788887776665444433455 8888873 3333322 11 22332 223322244568888654
Q ss_pred hhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707 229 LATWTDDECKLIMENCYKALLAGGKLIACE 258 (309)
Q Consensus 229 lh~~~d~~~~~iL~~~~~aL~pgG~l~i~e 258 (309)
|-.....+++++...++++-.+++.-
T Consensus 78 ----Ps~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 78 ----PSQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp -----GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred ----cHHHHHHHHHHHhhccCCCCEEEEec
Confidence 33444678999999997776666544
No 496
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=55.25 E-value=10 Score=36.88 Aligned_cols=103 Identities=12% Similarity=0.039 Sum_probs=69.4
Q ss_pred CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC-------CCC---Cc
Q 021707 159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-------IPA---AN 221 (309)
Q Consensus 159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-------~p~---~D 221 (309)
....+++-||-|.|.+..-+....|... .++++. |++++.++.+ .|..++-.|-.+. .++ .|
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~-i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQ-ITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccc-eeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCc
Confidence 3456788888888999999999999999 999998 8999988763 3344443333221 111 26
Q ss_pred eeee----hhhhhcC--Chh--HHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707 222 AIFM----KWVLATW--TDD--ECKLIMENCYKALLAGGKLIACEPVLLDD 264 (309)
Q Consensus 222 ~i~~----~~vlh~~--~d~--~~~~iL~~~~~aL~pgG~l~i~e~~~~~~ 264 (309)
+++. .. .|-. |.. -+..+|..++.+|+|.|.++|. .+.++.
T Consensus 373 vl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in-lv~r~~ 421 (482)
T KOG2352|consen 373 VLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN-LVTRNS 421 (482)
T ss_pred EEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEE-EecCCc
Confidence 6663 22 3433 222 3678999999999999977555 555544
No 497
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=55.25 E-value=15 Score=32.49 Aligned_cols=109 Identities=11% Similarity=0.162 Sum_probs=59.9
Q ss_pred HHHHhhcCCCCCc--ceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCC--------C---C-----CCceEEe
Q 021707 149 TSVLDSYNGFKGV--KRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAP--------S---I-----PGVTHIG 210 (309)
Q Consensus 149 ~~~~~~~~~~~~~--~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~--------~---~-----~ri~~~~ 210 (309)
+.+++++. ..+. .+|||.=+|-|.-+.-++.. +.+ +++++...++...- . . .||+++.
T Consensus 63 ~~l~kA~G-lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~-V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 63 DPLAKAVG-LKPGMRPSVLDATAGLGRDAFVLASL--GCK-VTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234)
T ss_dssp SHHHHHTT--BTTB---EEETT-TTSHHHHHHHHH--T---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred cHHHHHhC-CCCCCCCEEEECCCcchHHHHHHHcc--CCe-EEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence 45667764 4443 49999999999999888754 668 99999855543321 1 1 5899999
Q ss_pred CCCCCCCC--C--Cceeeehh----------------hhhcC--ChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707 211 GDMFNSIP--A--ANAIFMKW----------------VLATW--TDDECKLIMENCYKALLAGGKLIACEPVLLD 263 (309)
Q Consensus 211 ~d~~~~~p--~--~D~i~~~~----------------vlh~~--~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~ 263 (309)
+|..+.++ . .|+|++=- ++|.+ ++.+..++|+.+.++-+ -++++-++...+
T Consensus 139 ~d~~~~L~~~~~s~DVVY~DPMFp~~~ksa~vkk~m~~lr~L~~~d~~~~ell~~Alr~Ar--~RVVvKrp~~a~ 211 (234)
T PF04445_consen 139 GDALEYLRQPDNSFDVVYFDPMFPERKKSALVKKEMRVLRDLAGHDPDAEELLEEALRVAR--KRVVVKRPRKAP 211 (234)
T ss_dssp S-CCCHCCCHSS--SEEEE--S-----TTTT-SHHHHHHHHHHSHHTTGGGGHHHHHHH-S--SEEEEEEETT--
T ss_pred CCHHHHHhhcCCCCCEEEECCCCCCcccccccccchHHHHHhhccCcCHHHHHHHHHHhcC--cEEEEecCCCCc
Confidence 99887532 2 39888521 22221 12233455666555543 678877655443
No 498
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=54.75 E-value=43 Score=33.81 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=34.5
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeech
Q 021707 151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP 194 (309)
Q Consensus 151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p 194 (309)
+-..|.-+.....|||+||..|.++.-.++..|--.-++++|+.
T Consensus 35 ln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~ 78 (780)
T KOG1098|consen 35 LNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLV 78 (780)
T ss_pred HHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeee
Confidence 44555423567789999999999999999999865447999983
No 499
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=54.57 E-value=15 Score=25.06 Aligned_cols=29 Identities=28% Similarity=0.245 Sum_probs=22.5
Q ss_pred CCCcchHHHHHHHHHcCCceeeecccccCceEEc
Q 021707 34 GGDAENLQCILRLLTSYGVFSEHREFRGERKYSL 67 (309)
Q Consensus 34 g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~ 67 (309)
+.+.+.|+.+|..++..|.++.. +|.|++
T Consensus 32 ~~s~~eL~~fL~~lv~e~~L~~~-----~G~YkL 60 (60)
T PF08672_consen 32 DISLEELQEFLDRLVEEGKLECS-----GGSYKL 60 (60)
T ss_dssp T--HHHHHHHHHHHHHTTSEE-------TTEEEE
T ss_pred CCCHHHHHHHHHHHHHCCcEEec-----CCEEeC
Confidence 66778999999999999999999 488975
No 500
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=54.39 E-value=10 Score=38.72 Aligned_cols=92 Identities=18% Similarity=0.187 Sum_probs=58.0
Q ss_pred cceEEEecCCccHHHHHHHHhc-------C-----CCceEEEeec-h---hHHhhCC----------------------C
Q 021707 161 VKRLVDVGGSAGDCLRMILQKH-------H-----FICEGINFDL-P---EVVGEAP----------------------S 202 (309)
Q Consensus 161 ~~~vlDvG~G~G~~~~~l~~~~-------p-----~~~~~~~~D~-p---~~~~~a~----------------------~ 202 (309)
.-+|+|+|=|+|....+..+.+ | .++ .+.++. | +.+..+. .
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~-~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLH-FISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEE-EEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 4689999999999777777655 4 345 788885 2 1111110 0
Q ss_pred -------CC--CceEEeCCCCCCCC---C-Cceeeehh-hh----hcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707 203 -------IP--GVTHIGGDMFNSIP---A-ANAIFMKW-VL----ATWTDDECKLIMENCYKALLAGGKLIAC 257 (309)
Q Consensus 203 -------~~--ri~~~~~d~~~~~p---~-~D~i~~~~-vl----h~~~d~~~~~iL~~~~~aL~pgG~l~i~ 257 (309)
.. ++++.-||+.+.++ . +|++++=- .- ..|+ ..+|+++++.++|||++.-.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~----~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWS----PNLFNALARLARPGATLATF 205 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhcc----HHHHHHHHHHhCCCCEEEEe
Confidence 02 24466688765433 2 58888632 11 2244 36899999999999988844
Done!