BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021708
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 95.9 bits (237), Expect = 2e-20, Method: Composition-based stats.
Identities = 37/47 (78%), Positives = 42/47 (89%)
Query: 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 152
DG+ECAVCL+ELEDGE+AR LP+C HGFH EC+DMW SHSTCPLCR
Sbjct: 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 56.2 bits (134), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Query: 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158
+C +CLS LE+GE R LP C H FH C+D W ++ CP+CR VD+E
Sbjct: 16 KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICR--VDIE 62
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 93 KIPVVAFNQQDFK-DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLC 151
++P FN + + + C VC+ + E + R+LP CNH FH +C+D W +++ TCP+C
Sbjct: 8 QLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPIC 66
Query: 152 R 152
R
Sbjct: 67 R 67
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 100 NQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRN 153
++ GLEC VC + GE R LP CNH FH CI W + H +CP+CR
Sbjct: 8 TEEHVGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRK 60
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 152
C +C SE G+ A LP C+H FH C+ +W Q TCP+CR
Sbjct: 43 CPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV 155
CAVCL + + ++ + P C H FH +C+ W + CPLC PV
Sbjct: 18 CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPV 62
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 102 QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 152
+ D EC +C+ DG +LP C H F +CID W H CP+CR
Sbjct: 10 KQLTDEEECCICM----DGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156
C +CL ED + C H F CI W + + TCPLC+ PV+
Sbjct: 7 RCPICL---EDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 36.6 bits (83), Expect = 0.020, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 129 CNHGFHVECIDMWFQSHSTCPL 150
CNH FH CI W ++ CPL
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 36.6 bits (83), Expect = 0.020, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 129 CNHGFHVECIDMWFQSHSTCPL 150
CNH FH CI W ++ CPL
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 36.2 bits (82), Expect = 0.024, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 129 CNHGFHVECIDMWFQSHSTCPL 150
CNH FH CI W ++ CPL
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER 159
C C +E + + + +CNH FH C+ +W + ++ CPLC+ V+R
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQR 78
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 129 CNHGFHVECIDMWFQSHSTCPL 150
CNH FH CI W ++ CPL
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 129 CNHGFHVECIDMWFQSHSTCPL 150
CNH FH CI W ++ CPL
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 129 CNHGFHVECIDMWFQSHSTCPL 150
CNH FH CI W ++ CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 129 CNHGFHVECIDMWFQSHSTCPL 150
CNH FH CI W ++ CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 32.7 bits (73), Expect = 0.24, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 15/73 (20%)
Query: 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH------STCPLCRNPVDVE 158
K+ + C +CL L++ A CNH F CI + ++S+ CP+CR P
Sbjct: 17 KEEVTCPICLELLKEPVSA----DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF- 71
Query: 159 RSNNGNGEPSVEI 171
GN +P++ +
Sbjct: 72 ----GNLKPNLHV 80
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 32.7 bits (73), Expect = 0.27, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 108 LECAVCL---SELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER 159
+ C +C+ SE+ + + +C H F +C+ ++ +TCP CR ++ +R
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 32.3 bits (72), Expect = 0.33, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 108 LECAVCL---SELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER 159
+ C +C+ SE+ + + +C H F +C+ ++ +TCP CR ++ +R
Sbjct: 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 32.3 bits (72), Expect = 0.36, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLC 151
D L C +C E A ++P+C+H + CI + + CP C
Sbjct: 21 DLLRCGICF---EYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 129 CNHGFHVECIDMWFQSHSTCPLCRNPV 155
C H F CI+ W + CP+CR +
Sbjct: 71 CAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 108 LECAVCL---SELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSN--- 161
+ C +C+ SE+ + + +C H F +C+ ++ +TCP CR ++ +R +
Sbjct: 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 67
Query: 162 NGNGEPSVEIDIQNSQESLESG 183
G+G S I + E +++G
Sbjct: 68 IGSGTVSCPICMDGYSEIVQNG 89
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 108 LECAVCL---SELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER 159
+ C +C+ SE+ + + +C H F +C+ ++ +TCP CR ++ +R
Sbjct: 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 129 CNHGFHVECIDMWFQSHSTCPLCRNPV 155
C H F CI+ W + CP+CR +
Sbjct: 71 CAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV 155
++ L+C +C + + C H F CI+ W + CP+CR +
Sbjct: 61 LENELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRKDI 108
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 31.6 bits (70), Expect = 0.65, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNP 154
C +CL ++ + C H H C + + CPLC P
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGP 52
>pdb|2VM5|A Chain A, Human Bir2 Domain Of Baculoviral Inhibitor Of Apoptosis
Repeat-Containing 1 (Birc1)
Length = 106
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 85 GLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDG-----EKARLLPKC 129
G+ P +L + V +QD C CL E+G E A+ PKC
Sbjct: 37 GISPCVLSEAGFVFTGKQDTVQCFSCGGCLGNWEEGDDPWKEHAKWFPKC 86
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 108 LECAVCL---SELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156
+ C +C+ SE+ + + +C H F +C+ ++ +TCP CR ++
Sbjct: 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67
>pdb|2WNI|A Chain A, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
pdb|2WNI|B Chain B, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
pdb|2WNI|C Chain C, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
pdb|2WNI|D Chain D, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
pdb|2WU0|A Chain A, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
pdb|2WU0|B Chain B, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
pdb|2WU0|C Chain C, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
pdb|2WU0|D Chain D, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
Length = 418
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 143 QSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLESGYSTDSPPNFPTNVLFWGN 201
Q+ CP+ P VE+S +G S + N E+L G+S N P + L WG
Sbjct: 177 QADKPCPIFDTPWRVEQSKSGKTTISGLSVMANMVETLRLGWSE----NLPLSQLAWGK 231
>pdb|2WNH|A Chain A, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
pdb|2WNH|B Chain B, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
Length = 418
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 143 QSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLESGYSTDSPPNFPTNVLFWGN 201
Q+ CP+ P VE+S +G S + N E+L G+S N P + L WG
Sbjct: 177 QADKPCPIFDTPWRVEQSKSGKTTISGLSVMANMVETLRLGWSE----NLPLSQLAWGK 231
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 110 CAVCLSEL----EDGEKARLLPKCNHGFHVECIDMWFQSHST-----CPLCRN 153
C VC L +D +K + +C+ FH+ C+D S + CP CRN
Sbjct: 188 CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 240
>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
pdb|3ZVY|B Chain B, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
Length = 72
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 110 CAVCLSEL----EDGEKARLLPKCNHGFHVECIDMWFQSHST-----CPLCRN 153
C VC L +D +K + +C+ FH+ C+D S + CP CRN
Sbjct: 18 CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 70
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 110 CAVCLSEL----EDGEKARLLPKCNHGFHVECIDMWFQSHST-----CPLCRN 153
C VC L +D +K + +C+ FH+ C+D S + CP CRN
Sbjct: 172 CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 29.6 bits (65), Expect = 2.2, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 110 CAVCLSELEDGE-KARLLPKCNHGFHVECIDMWFQSHSTCPLC 151
C +CL ++ A +LP C H H C + + CPLC
Sbjct: 8 CPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2RHP|A Chain A, The Thrombospondin-1 Polymorphism Asn700ser Associated
With Cornoary Artery Disease Causes Local And
Long-Ranging Changes In Protein Structure
Length = 622
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 148 CPLCRNPVDVERSNNGNGEP-SVEI---DIQNSQESLESGYSTD 187
CP NP ++ NNG G+ SV+I D+ N +++ Y+TD
Sbjct: 229 CPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTD 272
>pdb|1YO8|A Chain A, Structure Of The C-Terminal Domain Of Human
Thrombospondin-2
Length = 634
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 148 CPLCRNPVDVERSNNGNGEP-SVEI---DIQNSQESLESGYSTD 187
CP NP ++ NNG G+ SV+I D+ N +++ Y+TD
Sbjct: 232 CPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTD 275
>pdb|1O5L|A Chain A, Crystal Structure Of Transcriptional Regulator (Tm1171)
From Thermotoga Maritima At 2.30 A Resolution
Length = 213
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 160 SNNGNGEPSVEIDIQNSQESLESGYSTDSPPNFPTNVLFWGNENLVS 206
S NG ++EID + + SG+ S P FP NV+ N ++S
Sbjct: 57 SENGK---TLEIDEIKPVQIIASGFIFSSEPRFPVNVVAGENSKILS 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,566,870
Number of Sequences: 62578
Number of extensions: 272116
Number of successful extensions: 407
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 375
Number of HSP's gapped (non-prelim): 49
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)