Query 021708
Match_columns 309
No_of_seqs 296 out of 2090
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:04:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.7 3E-18 6.5E-23 162.4 9.5 76 84-160 205-282 (348)
2 PF13639 zf-RING_2: Ring finge 99.5 6E-15 1.3E-19 100.2 1.8 44 108-152 1-44 (44)
3 COG5243 HRD1 HRD ubiquitin lig 99.5 4.3E-14 9.4E-19 133.2 7.7 55 104-159 284-348 (491)
4 PHA02929 N1R/p28-like protein; 99.3 2.8E-12 6.1E-17 116.8 4.6 73 84-156 148-227 (238)
5 PF12678 zf-rbx1: RING-H2 zinc 99.3 2.2E-12 4.7E-17 97.2 2.7 45 108-152 20-73 (73)
6 COG5540 RING-finger-containing 99.2 5.2E-12 1.1E-16 116.6 3.9 51 106-157 322-373 (374)
7 KOG0317 Predicted E3 ubiquitin 99.0 2.4E-10 5.2E-15 105.3 5.9 51 105-159 237-287 (293)
8 PF12861 zf-Apc11: Anaphase-pr 99.0 3E-10 6.5E-15 87.2 3.5 54 104-157 18-83 (85)
9 KOG0823 Predicted E3 ubiquitin 99.0 5.2E-10 1.1E-14 100.3 4.6 52 105-160 45-99 (230)
10 PLN03208 E3 ubiquitin-protein 98.9 8.5E-10 1.9E-14 97.1 5.0 51 105-159 16-82 (193)
11 cd00162 RING RING-finger (Real 98.9 7.9E-10 1.7E-14 73.5 3.4 44 109-155 1-45 (45)
12 PF13920 zf-C3HC4_3: Zinc fing 98.9 7.3E-10 1.6E-14 77.1 2.9 46 107-156 2-48 (50)
13 KOG0802 E3 ubiquitin ligase [P 98.8 2.9E-09 6.3E-14 108.4 5.6 53 105-158 289-343 (543)
14 PF13923 zf-C3HC4_2: Zinc fing 98.8 2E-09 4.4E-14 71.1 2.8 39 110-151 1-39 (39)
15 COG5194 APC11 Component of SCF 98.7 4.4E-09 9.5E-14 79.1 2.2 52 108-159 21-84 (88)
16 PHA02926 zinc finger-like prot 98.7 7.5E-09 1.6E-13 92.4 3.0 51 106-156 169-230 (242)
17 PF14634 zf-RING_5: zinc-RING 98.7 1.5E-08 3.2E-13 68.8 3.0 44 109-153 1-44 (44)
18 KOG0320 Predicted E3 ubiquitin 98.6 1.5E-08 3.2E-13 87.5 2.5 50 107-158 131-180 (187)
19 PF00097 zf-C3HC4: Zinc finger 98.6 2.1E-08 4.6E-13 66.6 2.5 39 110-151 1-41 (41)
20 smart00184 RING Ring finger. E 98.6 2.8E-08 6E-13 63.7 2.9 38 110-151 1-39 (39)
21 KOG3970 Predicted E3 ubiquitin 98.6 2.5E-07 5.3E-12 82.7 9.4 56 103-160 46-109 (299)
22 KOG1493 Anaphase-promoting com 98.6 6.5E-09 1.4E-13 77.6 -0.6 51 107-157 20-82 (84)
23 PF15227 zf-C3HC4_4: zinc fing 98.6 5.2E-08 1.1E-12 65.5 3.0 38 110-151 1-42 (42)
24 smart00504 Ubox Modified RING 98.5 6.3E-08 1.4E-12 70.0 3.5 46 108-157 2-47 (63)
25 TIGR00599 rad18 DNA repair pro 98.5 6.4E-08 1.4E-12 94.4 3.6 52 103-158 22-73 (397)
26 COG5574 PEX10 RING-finger-cont 98.4 1.3E-07 2.8E-12 86.4 2.4 50 106-159 214-265 (271)
27 KOG1734 Predicted RING-contain 98.4 6.3E-08 1.4E-12 88.5 0.1 53 106-159 223-284 (328)
28 KOG0828 Predicted E3 ubiquitin 98.3 2.4E-07 5.1E-12 90.8 1.6 50 107-157 571-635 (636)
29 PF11793 FANCL_C: FANCL C-term 98.3 1.6E-07 3.5E-12 70.1 0.0 50 108-157 3-67 (70)
30 smart00744 RINGv The RING-vari 98.2 6.9E-07 1.5E-11 62.1 2.6 42 109-152 1-49 (49)
31 COG5219 Uncharacterized conser 98.2 2.8E-07 6.2E-12 95.9 0.6 53 104-156 1466-1523(1525)
32 KOG2930 SCF ubiquitin ligase, 98.1 9.4E-07 2E-11 69.8 1.9 51 108-158 47-110 (114)
33 KOG2164 Predicted E3 ubiquitin 98.1 1.1E-06 2.5E-11 86.8 2.7 49 107-159 186-239 (513)
34 KOG0287 Postreplication repair 98.1 7.9E-07 1.7E-11 83.7 0.5 51 105-159 21-71 (442)
35 PF13445 zf-RING_UBOX: RING-ty 98.0 2.7E-06 5.8E-11 57.5 2.3 38 110-149 1-43 (43)
36 COG5432 RAD18 RING-finger-cont 98.0 3E-06 6.5E-11 78.4 2.3 48 106-157 24-71 (391)
37 PF04564 U-box: U-box domain; 98.0 4.1E-06 8.8E-11 62.9 2.6 49 106-158 3-52 (73)
38 KOG4265 Predicted E3 ubiquitin 97.9 5.9E-06 1.3E-10 78.6 3.4 51 105-159 288-339 (349)
39 TIGR00570 cdk7 CDK-activating 97.9 8.1E-06 1.8E-10 77.0 3.7 52 107-159 3-57 (309)
40 KOG0804 Cytoplasmic Zn-finger 97.9 4.9E-06 1.1E-10 81.1 1.9 49 105-156 173-222 (493)
41 KOG2177 Predicted E3 ubiquitin 97.9 5.1E-06 1.1E-10 75.5 1.6 45 104-152 10-54 (386)
42 KOG4172 Predicted E3 ubiquitin 97.8 5.5E-06 1.2E-10 58.2 0.8 46 107-156 7-54 (62)
43 KOG0827 Predicted E3 ubiquitin 97.8 1.2E-05 2.5E-10 77.2 2.0 45 108-152 5-52 (465)
44 KOG0311 Predicted E3 ubiquitin 97.6 6.6E-06 1.4E-10 78.1 -1.8 59 99-160 35-94 (381)
45 KOG4445 Uncharacterized conser 97.6 2E-05 4.3E-10 73.4 0.7 52 107-159 115-189 (368)
46 PF14835 zf-RING_6: zf-RING of 97.5 2.7E-05 6E-10 56.7 0.7 47 107-158 7-53 (65)
47 KOG0825 PHD Zn-finger protein 97.5 2E-05 4.4E-10 81.1 -0.1 49 108-157 124-172 (1134)
48 KOG1645 RING-finger-containing 97.5 5.9E-05 1.3E-09 72.9 2.9 49 106-154 3-54 (463)
49 KOG1039 Predicted E3 ubiquitin 97.4 7E-05 1.5E-09 72.0 2.2 52 106-157 160-222 (344)
50 KOG0824 Predicted E3 ubiquitin 97.3 8.5E-05 1.8E-09 69.3 1.8 48 107-158 7-55 (324)
51 KOG1785 Tyrosine kinase negati 97.2 0.0001 2.2E-09 71.2 1.1 45 109-157 371-417 (563)
52 KOG1941 Acetylcholine receptor 97.2 0.00019 4.1E-09 69.1 2.8 50 106-156 364-416 (518)
53 KOG0978 E3 ubiquitin ligase in 97.1 0.00013 2.9E-09 75.3 0.5 50 105-158 641-691 (698)
54 PF05883 Baculo_RING: Baculovi 96.9 0.00047 1E-08 57.5 1.6 46 107-153 26-77 (134)
55 KOG0801 Predicted E3 ubiquitin 96.7 0.00055 1.2E-08 58.6 0.6 40 95-135 164-204 (205)
56 KOG2660 Locus-specific chromos 96.7 0.00042 9.1E-09 65.5 -0.2 51 105-158 13-63 (331)
57 KOG0826 Predicted E3 ubiquitin 96.6 0.0042 9E-08 58.8 6.1 47 106-155 299-345 (357)
58 KOG1952 Transcription factor N 96.6 0.0012 2.7E-08 69.0 2.6 49 107-155 191-246 (950)
59 KOG4159 Predicted E3 ubiquitin 96.6 0.0013 2.8E-08 64.6 2.5 49 105-157 82-130 (398)
60 PF11789 zf-Nse: Zinc-finger o 96.6 0.0012 2.7E-08 47.2 1.7 41 107-150 11-53 (57)
61 KOG0297 TNF receptor-associate 96.6 0.0012 2.7E-08 64.8 2.3 53 104-159 18-70 (391)
62 PHA02825 LAP/PHD finger-like p 96.5 0.0027 5.8E-08 54.4 3.5 52 105-159 6-62 (162)
63 PHA02862 5L protein; Provision 96.4 0.0025 5.4E-08 53.7 3.0 49 107-158 2-55 (156)
64 PF12906 RINGv: RING-variant d 96.3 0.0029 6.4E-08 43.4 2.5 41 110-151 1-47 (47)
65 KOG1428 Inhibitor of type V ad 96.3 0.0025 5.4E-08 69.8 3.1 67 89-156 3466-3544(3738)
66 PF14570 zf-RING_4: RING/Ubox 96.2 0.004 8.7E-08 43.0 2.7 45 110-155 1-47 (48)
67 KOG2879 Predicted E3 ubiquitin 96.1 0.0052 1.1E-07 56.9 3.8 50 104-156 236-287 (298)
68 KOG1002 Nucleotide excision re 96.1 0.0023 5E-08 63.9 1.5 50 105-158 534-588 (791)
69 KOG3268 Predicted E3 ubiquitin 95.9 0.005 1.1E-07 53.7 2.2 30 129-158 190-230 (234)
70 KOG1814 Predicted E3 ubiquitin 95.8 0.0045 9.7E-08 60.3 1.8 47 107-154 184-238 (445)
71 PF10367 Vps39_2: Vacuolar sor 95.8 0.0037 8E-08 49.4 1.0 33 105-139 76-108 (109)
72 KOG3039 Uncharacterized conser 95.5 0.012 2.5E-07 53.9 3.2 50 109-158 223-272 (303)
73 KOG1571 Predicted E3 ubiquitin 95.5 0.0081 1.8E-07 57.6 2.2 43 107-156 305-347 (355)
74 COG5222 Uncharacterized conser 95.5 0.011 2.3E-07 55.5 2.9 43 108-153 275-318 (427)
75 COG5152 Uncharacterized conser 95.3 0.0063 1.4E-07 53.9 0.9 44 108-155 197-240 (259)
76 PHA03096 p28-like protein; Pro 95.3 0.0084 1.8E-07 56.5 1.6 46 108-153 179-231 (284)
77 KOG4692 Predicted E3 ubiquitin 95.0 0.014 3E-07 55.9 2.1 48 106-157 421-468 (489)
78 COG5175 MOT2 Transcriptional r 94.4 0.025 5.4E-07 54.0 2.3 51 107-158 14-66 (480)
79 KOG0827 Predicted E3 ubiquitin 94.3 0.0035 7.6E-08 60.6 -3.7 49 109-158 198-247 (465)
80 KOG1813 Predicted E3 ubiquitin 94.3 0.016 3.5E-07 54.2 0.7 45 108-156 242-286 (313)
81 PF08746 zf-RING-like: RING-li 94.2 0.027 5.9E-07 37.9 1.6 41 110-151 1-43 (43)
82 KOG4739 Uncharacterized protei 94.2 0.017 3.6E-07 52.7 0.7 46 109-158 5-50 (233)
83 KOG2034 Vacuolar sorting prote 94.2 0.024 5.2E-07 60.0 1.9 38 104-143 814-851 (911)
84 KOG2114 Vacuolar assembly/sort 94.1 0.024 5.3E-07 59.7 1.7 40 108-153 841-880 (933)
85 PF04641 Rtf2: Rtf2 RING-finge 93.8 0.074 1.6E-06 49.4 4.2 54 105-159 111-164 (260)
86 KOG4185 Predicted E3 ubiquitin 93.8 0.044 9.4E-07 51.5 2.7 47 108-155 4-54 (296)
87 KOG4275 Predicted E3 ubiquitin 93.7 0.013 2.8E-07 54.8 -1.0 42 107-156 300-342 (350)
88 PF14446 Prok-RING_1: Prokaryo 93.5 0.083 1.8E-06 37.4 3.1 34 107-140 5-38 (54)
89 KOG1940 Zn-finger protein [Gen 93.3 0.045 9.8E-07 51.2 1.9 44 109-153 160-204 (276)
90 KOG0309 Conserved WD40 repeat- 93.0 0.055 1.2E-06 56.5 2.1 23 128-150 1047-1069(1081)
91 COG5236 Uncharacterized conser 92.3 0.17 3.8E-06 48.5 4.2 47 105-155 59-107 (493)
92 KOG2932 E3 ubiquitin ligase in 91.6 0.072 1.6E-06 50.3 0.9 43 109-156 92-134 (389)
93 PF14447 Prok-RING_4: Prokaryo 91.4 0.11 2.4E-06 36.8 1.4 45 108-158 8-52 (55)
94 KOG1001 Helicase-like transcri 91.4 0.075 1.6E-06 55.8 0.8 48 108-160 455-504 (674)
95 PF07800 DUF1644: Protein of u 91.3 0.19 4.2E-06 43.2 3.1 35 107-143 2-47 (162)
96 PF10272 Tmpp129: Putative tra 91.1 0.28 6.2E-06 47.7 4.5 29 129-157 311-352 (358)
97 KOG2817 Predicted E3 ubiquitin 90.8 0.71 1.5E-05 45.1 6.8 45 106-151 333-380 (394)
98 COG5183 SSM4 Protein involved 90.7 0.16 3.4E-06 53.6 2.4 54 105-158 10-68 (1175)
99 KOG1100 Predicted E3 ubiquitin 90.6 0.11 2.4E-06 46.8 1.1 39 110-156 161-200 (207)
100 KOG1609 Protein involved in mR 90.3 0.15 3.2E-06 47.9 1.7 51 107-158 78-136 (323)
101 KOG3053 Uncharacterized conser 89.7 0.16 3.4E-06 46.9 1.3 55 104-159 17-85 (293)
102 COG5220 TFB3 Cdk activating ki 89.3 0.12 2.5E-06 47.3 0.2 49 107-155 10-63 (314)
103 KOG3800 Predicted E3 ubiquitin 89.0 0.3 6.5E-06 45.8 2.6 48 109-156 2-51 (300)
104 KOG0298 DEAD box-containing he 88.9 0.13 2.9E-06 56.5 0.3 45 108-155 1154-1198(1394)
105 KOG0802 E3 ubiquitin ligase [P 88.4 0.28 6E-06 50.4 2.2 49 105-161 477-525 (543)
106 KOG3002 Zn finger protein [Gen 86.7 0.44 9.4E-06 45.3 2.3 45 106-156 47-91 (299)
107 KOG3161 Predicted E3 ubiquitin 86.0 0.27 5.9E-06 50.7 0.5 43 107-153 11-54 (861)
108 PF02439 Adeno_E3_CR2: Adenovi 85.8 1.9 4.1E-05 28.3 4.1 23 26-48 8-30 (38)
109 PF03854 zf-P11: P-11 zinc fin 85.1 0.28 6.1E-06 33.7 0.1 29 129-157 18-47 (50)
110 PF15050 SCIMP: SCIMP protein 84.1 2.3 5E-05 34.9 5.0 33 23-55 9-41 (133)
111 KOG1812 Predicted E3 ubiquitin 83.4 0.43 9.4E-06 46.9 0.6 37 107-144 146-183 (384)
112 PF13901 DUF4206: Domain of un 82.4 0.92 2E-05 40.6 2.3 41 107-153 152-197 (202)
113 KOG3899 Uncharacterized conser 81.5 0.71 1.5E-05 43.5 1.2 30 129-158 325-367 (381)
114 KOG0825 PHD Zn-finger protein 81.2 0.85 1.8E-05 48.2 1.7 50 107-156 96-154 (1134)
115 PF07975 C1_4: TFIIH C1-like d 80.4 1.7 3.6E-05 30.4 2.5 42 110-152 2-50 (51)
116 KOG3005 GIY-YIG type nuclease 80.3 0.92 2E-05 42.2 1.5 48 108-155 183-242 (276)
117 PF11023 DUF2614: Protein of u 79.2 8.6 0.00019 31.3 6.5 21 141-161 81-101 (114)
118 PF10571 UPF0547: Uncharacteri 79.0 1.1 2.3E-05 26.9 1.0 24 109-134 2-25 (26)
119 KOG0269 WD40 repeat-containing 78.6 1.4 3.1E-05 46.4 2.4 40 109-150 781-820 (839)
120 KOG4362 Transcriptional regula 78.4 0.56 1.2E-05 49.0 -0.6 47 107-157 21-70 (684)
121 PF01102 Glycophorin_A: Glycop 78.2 3.6 7.8E-05 34.0 4.2 12 23-34 66-77 (122)
122 PHA02975 hypothetical protein; 77.3 5.3 0.00011 29.6 4.4 29 20-48 40-68 (69)
123 PHA02650 hypothetical protein; 76.6 5 0.00011 30.5 4.2 29 21-49 46-74 (81)
124 TIGR01478 STEVOR variant surfa 75.8 3.4 7.3E-05 38.9 3.8 29 27-55 262-290 (295)
125 PF01102 Glycophorin_A: Glycop 75.6 4.3 9.4E-05 33.5 4.1 19 33-51 72-90 (122)
126 KOG4718 Non-SMC (structural ma 75.4 1.6 3.4E-05 39.4 1.5 45 108-155 182-226 (235)
127 PF05290 Baculo_IE-1: Baculovi 75.2 2.1 4.6E-05 35.8 2.1 48 108-157 81-133 (140)
128 PTZ00370 STEVOR; Provisional 74.6 3.4 7.4E-05 39.0 3.5 29 27-55 258-286 (296)
129 KOG1829 Uncharacterized conser 74.5 1.1 2.4E-05 46.2 0.3 44 106-153 510-558 (580)
130 PF15102 TMEM154: TMEM154 prot 73.9 0.75 1.6E-05 39.1 -0.9 10 135-144 127-136 (146)
131 PF14569 zf-UDP: Zinc-binding 73.8 4.4 9.5E-05 30.8 3.3 55 107-161 9-67 (80)
132 smart00249 PHD PHD zinc finger 72.4 2.6 5.5E-05 27.3 1.6 30 110-140 2-31 (47)
133 TIGR00622 ssl1 transcription f 72.4 4.3 9.3E-05 33.1 3.2 45 108-152 56-110 (112)
134 smart00132 LIM Zinc-binding do 72.0 3.3 7.1E-05 25.8 2.1 36 110-155 2-37 (39)
135 KOG2041 WD40 repeat protein [G 70.5 8.2 0.00018 40.9 5.4 47 106-156 1130-1185(1189)
136 PHA02844 putative transmembran 70.3 5.5 0.00012 29.9 3.1 27 22-48 46-72 (75)
137 PF15176 LRR19-TM: Leucine-ric 69.4 12 0.00027 29.8 5.1 35 20-54 13-47 (102)
138 KOG4367 Predicted Zn-finger pr 69.3 2.3 5E-05 42.2 1.2 35 105-143 2-36 (699)
139 PF13719 zinc_ribbon_5: zinc-r 68.8 2.9 6.4E-05 27.0 1.3 26 109-134 4-36 (37)
140 KOG2066 Vacuolar assembly/sort 68.5 1.8 3.9E-05 45.8 0.4 44 106-151 783-830 (846)
141 PF00628 PHD: PHD-finger; Int 68.2 2.6 5.6E-05 28.6 1.0 43 109-152 1-49 (51)
142 PF13717 zinc_ribbon_4: zinc-r 67.2 3.6 7.8E-05 26.4 1.4 27 108-134 3-36 (36)
143 PHA03054 IMV membrane protein; 66.8 10 0.00022 28.2 3.9 26 21-46 45-70 (72)
144 KOG3842 Adaptor protein Pellin 66.7 6.2 0.00013 37.8 3.4 51 107-158 341-416 (429)
145 PHA02819 hypothetical protein; 66.4 11 0.00024 28.1 4.0 27 21-47 43-69 (71)
146 PRK05978 hypothetical protein; 66.2 4.5 9.8E-05 34.6 2.3 34 125-163 35-70 (148)
147 KOG3113 Uncharacterized conser 65.6 4.9 0.00011 37.3 2.5 51 108-160 112-162 (293)
148 PF00412 LIM: LIM domain; Int 63.4 5.1 0.00011 27.6 1.8 39 110-158 1-39 (58)
149 PLN02189 cellulose synthase 63.1 9.2 0.0002 42.1 4.4 53 107-159 34-90 (1040)
150 PHA02849 putative transmembran 62.2 20 0.00044 27.2 4.8 28 21-49 15-42 (82)
151 KOG1812 Predicted E3 ubiquitin 62.0 3.8 8.2E-05 40.4 1.2 45 107-152 306-352 (384)
152 COG5109 Uncharacterized conser 60.9 6.2 0.00013 37.8 2.3 44 107-151 336-382 (396)
153 PF12575 DUF3753: Protein of u 60.3 20 0.00043 26.9 4.4 19 28-46 52-70 (72)
154 PF10497 zf-4CXXC_R1: Zinc-fin 60.0 11 0.00024 30.2 3.4 48 106-153 6-69 (105)
155 PF08114 PMP1_2: ATPase proteo 59.1 13 0.00029 24.7 2.9 22 28-49 14-35 (43)
156 PF02891 zf-MIZ: MIZ/SP-RING z 58.6 10 0.00022 26.2 2.5 43 108-154 3-50 (50)
157 KOG3039 Uncharacterized conser 57.9 8.5 0.00018 35.6 2.6 37 104-144 40-76 (303)
158 KOG2068 MOT2 transcription fac 57.3 7.5 0.00016 37.3 2.2 48 108-156 250-298 (327)
159 PF01363 FYVE: FYVE zinc finge 56.6 5 0.00011 29.0 0.8 36 107-142 9-44 (69)
160 PF04277 OAD_gamma: Oxaloaceta 56.4 32 0.0007 25.5 5.2 26 23-48 7-32 (79)
161 PLN02436 cellulose synthase A 56.3 14 0.00031 40.8 4.4 53 107-159 36-92 (1094)
162 KOG4323 Polycomb-like PHD Zn-f 54.9 8.1 0.00017 38.9 2.1 51 106-156 167-226 (464)
163 PRK02935 hypothetical protein; 53.7 80 0.0017 25.5 7.1 19 143-161 84-102 (110)
164 KOG1815 Predicted E3 ubiquitin 53.1 7.6 0.00016 38.9 1.6 37 105-144 68-104 (444)
165 smart00647 IBR In Between Ring 51.3 6.3 0.00014 27.6 0.5 21 121-141 38-58 (64)
166 KOG0824 Predicted E3 ubiquitin 51.2 5.1 0.00011 38.0 0.1 50 105-157 103-152 (324)
167 PF06679 DUF1180: Protein of u 50.6 38 0.00083 29.4 5.4 20 30-49 99-118 (163)
168 cd00065 FYVE FYVE domain; Zinc 50.5 12 0.00025 25.9 1.8 36 108-143 3-38 (57)
169 PF06906 DUF1272: Protein of u 49.9 21 0.00046 25.5 3.0 44 108-156 6-52 (57)
170 PF09943 DUF2175: Uncharacteri 49.4 14 0.0003 29.5 2.3 33 109-143 4-36 (101)
171 PF04710 Pellino: Pellino; In 49.4 5.6 0.00012 39.1 0.0 50 107-157 328-402 (416)
172 PF06844 DUF1244: Protein of u 49.0 9.7 0.00021 28.0 1.2 12 132-143 11-22 (68)
173 KOG3579 Predicted E3 ubiquitin 48.9 12 0.00026 35.4 2.1 37 107-144 268-305 (352)
174 PLN02400 cellulose synthase 48.8 18 0.00039 40.1 3.7 54 107-160 36-93 (1085)
175 COG4847 Uncharacterized protei 48.8 15 0.00031 29.1 2.2 34 108-143 7-40 (103)
176 PHA02692 hypothetical protein; 48.4 30 0.00065 25.8 3.7 16 31-46 53-68 (70)
177 PLN02638 cellulose synthase A 48.1 20 0.00044 39.7 3.9 54 107-160 17-74 (1079)
178 KOG2807 RNA polymerase II tran 47.4 16 0.00034 35.2 2.6 45 108-153 331-375 (378)
179 PF10669 Phage_Gp23: Protein g 46.7 37 0.0008 27.0 4.2 21 28-48 18-38 (121)
180 PF05568 ASFV_J13L: African sw 46.0 43 0.00093 28.6 4.8 6 43-48 47-52 (189)
181 smart00064 FYVE Protein presen 45.5 19 0.0004 25.9 2.3 36 107-142 10-45 (68)
182 PF14311 DUF4379: Domain of un 42.9 18 0.00039 25.1 1.8 27 124-151 29-55 (55)
183 PF08374 Protocadherin: Protoc 42.8 17 0.00036 33.0 2.0 26 21-46 36-61 (221)
184 PF05568 ASFV_J13L: African sw 42.8 39 0.00083 28.9 4.0 27 23-49 31-57 (189)
185 PF07649 C1_3: C1-like domain; 42.6 20 0.00044 21.7 1.8 29 109-138 2-30 (30)
186 PF14979 TMEM52: Transmembrane 42.3 54 0.0012 28.0 4.8 12 21-32 20-31 (154)
187 KOG1729 FYVE finger containing 41.6 6.1 0.00013 37.4 -1.0 37 109-146 216-252 (288)
188 KOG2071 mRNA cleavage and poly 41.6 13 0.00028 38.4 1.2 37 105-142 511-557 (579)
189 KOG1815 Predicted E3 ubiquitin 40.1 8.7 0.00019 38.4 -0.3 36 108-144 227-267 (444)
190 PHA03099 epidermal growth fact 40.0 29 0.00063 29.0 2.8 17 19-35 96-112 (139)
191 PF15069 FAM163: FAM163 family 39.6 18 0.0004 30.6 1.7 14 15-28 4-17 (143)
192 PLN02915 cellulose synthase A 39.4 30 0.00065 38.3 3.6 53 107-159 15-71 (1044)
193 PF15179 Myc_target_1: Myc tar 39.0 60 0.0013 28.8 4.7 12 192-203 160-171 (197)
194 PF13314 DUF4083: Domain of un 36.7 1E+02 0.0022 22.1 4.8 8 42-49 24-31 (58)
195 PHA02650 hypothetical protein; 36.5 82 0.0018 24.1 4.5 28 18-45 46-73 (81)
196 PF04710 Pellino: Pellino; In 36.1 12 0.00026 36.9 0.0 27 124-154 305-337 (416)
197 KOG0956 PHD finger protein AF1 35.9 16 0.00035 38.5 0.9 52 107-158 117-184 (900)
198 PF15069 FAM163: FAM163 family 35.9 47 0.001 28.2 3.5 26 23-48 6-31 (143)
199 PLN02195 cellulose synthase A 35.5 47 0.001 36.6 4.3 51 107-157 6-60 (977)
200 PF04906 Tweety: Tweety; Inte 35.1 72 0.0016 31.6 5.3 45 9-54 6-50 (406)
201 PTZ00303 phosphatidylinositol 33.9 30 0.00064 37.3 2.4 35 108-142 461-500 (1374)
202 COG3813 Uncharacterized protei 33.6 35 0.00075 25.7 2.1 45 109-156 7-52 (84)
203 COG4736 CcoQ Cbb3-type cytochr 33.4 83 0.0018 22.8 4.0 23 26-48 7-29 (60)
204 PRK14762 membrane protein; Pro 33.2 74 0.0016 18.9 3.0 10 24-33 6-15 (27)
205 PF07282 OrfB_Zn_ribbon: Putat 32.8 59 0.0013 23.3 3.3 35 106-140 27-63 (69)
206 PF05151 PsbM: Photosystem II 32.6 96 0.0021 19.4 3.6 17 30-46 12-28 (31)
207 PF10577 UPF0560: Uncharacteri 32.3 40 0.00086 36.3 3.1 6 245-250 647-652 (807)
208 PF02009 Rifin_STEVOR: Rifin/s 32.2 62 0.0014 30.8 4.1 11 42-52 271-281 (299)
209 PF06024 DUF912: Nucleopolyhed 31.9 32 0.00069 27.3 1.8 12 21-32 58-69 (101)
210 PHA02975 hypothetical protein; 31.9 91 0.002 23.2 4.0 27 17-43 40-66 (69)
211 PF02439 Adeno_E3_CR2: Adenovi 31.4 1.1E+02 0.0025 20.0 4.0 22 30-51 8-29 (38)
212 PF14654 Epiglycanin_C: Mucin, 31.3 1E+02 0.0023 24.5 4.5 36 12-48 10-45 (106)
213 PF07204 Orthoreo_P10: Orthore 31.1 42 0.0009 26.5 2.3 13 20-32 39-51 (98)
214 PTZ00370 STEVOR; Provisional 30.2 60 0.0013 30.8 3.6 17 34-50 261-277 (296)
215 PF04277 OAD_gamma: Oxaloaceta 30.2 1.1E+02 0.0024 22.5 4.5 24 25-48 6-29 (79)
216 KOG1538 Uncharacterized conser 30.1 25 0.00054 37.2 1.1 35 122-156 1043-1077(1081)
217 PRK04989 psbM photosystem II r 30.0 74 0.0016 20.5 2.8 18 29-46 11-28 (35)
218 PF05961 Chordopox_A13L: Chord 30.0 87 0.0019 23.2 3.6 10 84-93 51-60 (68)
219 COG1545 Predicted nucleic-acid 29.7 30 0.00065 29.1 1.4 24 124-155 30-53 (140)
220 PF10083 DUF2321: Uncharacteri 29.5 24 0.00052 30.4 0.8 46 111-159 8-53 (158)
221 smart00531 TFIIE Transcription 29.2 48 0.001 27.9 2.6 15 145-159 123-137 (147)
222 KOG2113 Predicted RNA binding 29.1 48 0.001 31.9 2.7 44 107-156 343-387 (394)
223 PF04216 FdhE: Protein involve 28.8 7.7 0.00017 36.5 -2.6 45 108-153 173-219 (290)
224 PF15339 Afaf: Acrosome format 28.6 1.2E+02 0.0026 26.6 4.9 16 31-46 138-153 (200)
225 PF04423 Rad50_zn_hook: Rad50 28.5 21 0.00046 24.7 0.2 13 146-158 21-33 (54)
226 PRK04023 DNA polymerase II lar 28.4 32 0.0007 37.9 1.7 46 107-158 626-676 (1121)
227 COG3492 Uncharacterized protei 28.1 26 0.00056 27.5 0.7 13 132-144 42-54 (104)
228 PHA03156 hypothetical protein; 27.9 1.9E+02 0.004 22.6 5.3 33 16-48 52-84 (90)
229 PF09425 CCT_2: Divergent CCT 26.9 21 0.00046 21.7 -0.0 14 274-287 3-16 (27)
230 PHA03163 hypothetical protein; 26.9 1.9E+02 0.0042 22.6 5.2 33 16-48 53-85 (92)
231 PF14584 DUF4446: Protein of u 26.5 1.1E+02 0.0024 26.1 4.3 25 94-118 83-108 (151)
232 PF12575 DUF3753: Protein of u 26.3 1.3E+02 0.0028 22.6 4.1 22 19-40 46-67 (72)
233 TIGR03038 PS_II_psbM photosyst 26.1 1E+02 0.0022 19.6 2.9 17 30-46 12-28 (33)
234 PHA02657 hypothetical protein; 25.9 1.2E+02 0.0026 23.6 3.9 16 88-103 72-87 (95)
235 CHL00080 psbM photosystem II p 25.9 93 0.002 19.9 2.8 18 29-46 11-28 (34)
236 COG1622 CyoA Heme/copper-type 25.5 1.2E+02 0.0027 28.0 4.8 13 20-32 31-43 (247)
237 PF10153 DUF2361: Uncharacteri 25.1 42 0.0009 27.4 1.4 13 274-286 4-16 (114)
238 PHA02844 putative transmembran 25.0 78 0.0017 23.9 2.7 25 18-42 45-69 (75)
239 PHA02819 hypothetical protein; 25.0 90 0.002 23.3 3.0 28 16-43 41-68 (71)
240 PF15050 SCIMP: SCIMP protein 24.9 1.5E+02 0.0033 24.5 4.6 26 25-50 8-33 (133)
241 PF09723 Zn-ribbon_8: Zinc rib 24.8 18 0.00039 23.9 -0.6 25 128-153 10-34 (42)
242 PRK11486 flagellar biosynthesi 24.7 1.2E+02 0.0025 25.2 4.0 19 30-48 24-42 (124)
243 COG0777 AccD Acetyl-CoA carbox 24.6 61 0.0013 30.6 2.5 32 122-156 27-58 (294)
244 KOG1356 Putative transcription 24.5 27 0.00058 37.7 0.2 33 108-142 230-262 (889)
245 PRK11088 rrmA 23S rRNA methylt 24.3 47 0.001 30.5 1.8 26 108-134 3-28 (272)
246 PF13832 zf-HC5HC2H_2: PHD-zin 24.1 49 0.0011 26.0 1.7 32 107-141 55-88 (110)
247 PRK11827 hypothetical protein; 24.1 31 0.00067 24.9 0.4 19 139-157 2-20 (60)
248 PF06750 DiS_P_DiS: Bacterial 24.1 68 0.0015 25.0 2.4 37 108-157 34-70 (92)
249 PF07219 HemY_N: HemY protein 23.9 1.5E+02 0.0032 23.4 4.4 13 19-31 12-24 (108)
250 COG5627 MMS21 DNA repair prote 23.9 39 0.00084 31.2 1.1 40 108-150 190-231 (275)
251 KOG1245 Chromatin remodeling c 23.7 27 0.00059 40.1 0.1 49 106-155 1107-1159(1404)
252 PF12768 Rax2: Cortical protei 23.6 72 0.0016 30.1 2.9 28 21-48 227-254 (281)
253 PF09538 FYDLN_acid: Protein o 23.6 60 0.0013 26.2 2.0 12 147-158 28-39 (108)
254 COG4741 Predicted secreted end 23.6 1.1E+02 0.0024 26.5 3.7 23 26-48 5-27 (175)
255 PF01485 IBR: IBR domain; Int 23.4 12 0.00026 26.1 -1.8 33 109-141 20-58 (64)
256 PF06676 DUF1178: Protein of u 23.4 33 0.00072 29.3 0.5 23 129-156 10-43 (148)
257 KOG2979 Protein involved in DN 23.3 47 0.001 31.0 1.5 44 108-154 177-222 (262)
258 PHA03049 IMV membrane protein; 23.2 1.4E+02 0.0029 22.1 3.6 9 85-93 52-60 (68)
259 PF11980 DUF3481: Domain of un 22.9 90 0.0019 24.2 2.7 16 22-37 18-33 (87)
260 PF09986 DUF2225: Uncharacteri 22.7 54 0.0012 29.5 1.8 50 107-159 5-62 (214)
261 PLN00090 photosystem II reacti 22.6 1.6E+02 0.0035 23.3 4.2 25 23-47 75-99 (113)
262 PF06796 NapE: Periplasmic nit 22.6 2.4E+02 0.0051 20.1 4.6 26 1-27 1-26 (56)
263 PF03107 C1_2: C1 domain; Int 22.4 47 0.001 20.2 0.9 28 109-137 2-29 (30)
264 KOG1512 PHD Zn-finger protein 22.3 39 0.00084 32.1 0.8 31 109-140 316-346 (381)
265 PLN00055 photosystem II reacti 22.3 1.3E+02 0.0029 22.5 3.4 7 25-31 42-48 (73)
266 CHL00066 psbH photosystem II p 22.2 1.3E+02 0.0029 22.5 3.5 7 25-31 42-48 (73)
267 KOG0955 PHD finger protein BR1 22.0 44 0.00096 37.2 1.3 38 102-139 214-252 (1051)
268 PRK03814 oxaloacetate decarbox 22.0 1.8E+02 0.0038 22.5 4.3 13 36-48 24-36 (85)
269 TIGR01195 oadG_fam sodium pump 21.9 2E+02 0.0044 21.9 4.6 21 28-48 12-32 (82)
270 PF03554 Herpes_UL73: UL73 vir 21.9 1.6E+02 0.0035 22.6 4.0 29 18-46 46-74 (82)
271 PRK03814 oxaloacetate decarbox 21.7 1.7E+02 0.0037 22.5 4.2 29 21-49 12-40 (85)
272 PLN02248 cellulose synthase-li 21.7 95 0.0021 34.8 3.7 29 129-157 150-178 (1135)
273 PF02060 ISK_Channel: Slow vol 21.7 1.4E+02 0.003 24.9 3.8 24 23-46 44-67 (129)
274 KOG3352 Cytochrome c oxidase, 21.4 48 0.001 28.4 1.1 7 109-116 113-119 (153)
275 PRK14094 psbM photosystem II r 21.2 65 0.0014 22.1 1.5 18 29-46 11-28 (50)
276 PF07406 NICE-3: NICE-3 protei 21.0 2E+02 0.0043 25.5 5.0 17 133-149 124-142 (186)
277 PF02318 FYVE_2: FYVE-type zin 20.6 53 0.0012 26.6 1.2 47 106-153 53-102 (118)
278 PHA03030 hypothetical protein; 20.4 81 0.0018 25.3 2.1 7 41-47 17-23 (122)
279 COG0675 Transposase and inacti 20.4 58 0.0013 30.1 1.6 26 108-136 310-335 (364)
280 PRK03564 formate dehydrogenase 20.3 37 0.00081 32.5 0.3 46 107-153 187-234 (309)
281 KOG4430 Topoisomerase I-bindin 20.3 32 0.0007 35.4 -0.1 54 106-159 259-312 (553)
282 smart00109 C1 Protein kinase C 20.3 79 0.0017 20.4 1.8 34 107-140 11-44 (49)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=3e-18 Score=162.37 Aligned_cols=76 Identities=41% Similarity=0.940 Sum_probs=65.9
Q ss_pred cCCCHHHHhcCCceeeccCCCCCC-ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCC-CcccCcccccCCC
Q 021708 84 AGLDPAILRKIPVVAFNQQDFKDG-LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHST-CPLCRNPVDVERS 160 (309)
Q Consensus 84 ~g~~~~~~~~lp~~~~~~~~~~~~-~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~-CP~CR~~i~~~~~ 160 (309)
..+.+..++++|..+|...+.++. +.|+||||+|..||++|.|| |+|.||..||++||..+.+ ||+|++++....+
T Consensus 205 ~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~ 282 (348)
T KOG4628|consen 205 NRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSG 282 (348)
T ss_pred hhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCCC
Confidence 467788999999999998765543 58999999999999999999 9999999999999977654 9999998875543
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.50 E-value=6e-15 Score=100.22 Aligned_cols=44 Identities=52% Similarity=1.234 Sum_probs=40.1
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccC
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 152 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 152 (309)
++|+||+++|..++.+..++ |+|.||.+||..|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 36999999999889999998 999999999999999999999997
No 3
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=4.3e-14 Score=133.16 Aligned_cols=55 Identities=31% Similarity=0.916 Sum_probs=44.9
Q ss_pred CCCCceeccccccc-ccC---------cceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCC
Q 021708 104 FKDGLECAVCLSEL-EDG---------EKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER 159 (309)
Q Consensus 104 ~~~~~~C~ICl~~~-~~~---------~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 159 (309)
..++..|.||++++ ..+ .+.+.|| |||+||-+|++.|++++++||.||.++..+.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~ifd~ 348 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVIFDQ 348 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCcccccc
Confidence 34567899999995 433 2457888 9999999999999999999999999954433
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.27 E-value=2.8e-12 Score=116.81 Aligned_cols=73 Identities=36% Similarity=0.747 Sum_probs=57.1
Q ss_pred cCCCHHHHhcCCceeeccCC---CCCCceecccccccccCcc----eeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 84 AGLDPAILRKIPVVAFNQQD---FKDGLECAVCLSELEDGEK----ARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 84 ~g~~~~~~~~lp~~~~~~~~---~~~~~~C~ICl~~~~~~~~----~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
.+..+..+..+|.+..+-+. ...+.+|+||++++.+++. +.+++.|+|.||..||..|+..+.+||+||..+.
T Consensus 148 ~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 148 GKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred cchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 55678889999988755433 2346789999999876542 2344459999999999999999999999999875
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.26 E-value=2.2e-12 Score=97.23 Aligned_cols=45 Identities=44% Similarity=0.998 Sum_probs=34.7
Q ss_pred ceecccccccccC---------cceeecCCCCCccchhHHHHHHhcCCCCcccC
Q 021708 108 LECAVCLSELEDG---------EKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 152 (309)
Q Consensus 108 ~~C~ICl~~~~~~---------~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 152 (309)
+.|+||+++|.+. +....+..|||.||..||.+||..+.+||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 4599999999421 22333334999999999999999999999998
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=5.2e-12 Score=116.57 Aligned_cols=51 Identities=41% Similarity=1.148 Sum_probs=46.1
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCccccc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDV 157 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~ 157 (309)
.+.+|+|||++|..++.++.+| |+|.||..|+++|+.. +..||+||..|.+
T Consensus 322 ~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 3578999999999999999999 9999999999999985 5679999998864
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.4e-10 Score=105.26 Aligned_cols=51 Identities=29% Similarity=0.774 Sum_probs=43.0
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCC
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER 159 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 159 (309)
+....|.+||+.... .--+| |||+|||.||..|...+..||+||....+.+
T Consensus 237 ~a~~kC~LCLe~~~~---pSaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 237 EATRKCSLCLENRSN---PSATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCceEEEecCCCC---CCcCc-CcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 345789999999765 45677 9999999999999999999999998876543
No 8
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.99 E-value=3e-10 Score=87.25 Aligned_cols=54 Identities=28% Similarity=0.811 Sum_probs=41.6
Q ss_pred CCCCceeccccccccc---------CcceeecCCCCCccchhHHHHHHhc---CCCCcccCccccc
Q 021708 104 FKDGLECAVCLSELED---------GEKARLLPKCNHGFHVECIDMWFQS---HSTCPLCRNPVDV 157 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~---------~~~~~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~i~~ 157 (309)
..+++.|.||...|.. ++...++.+|+|.||.+||.+||.. +..||+||+....
T Consensus 18 ~~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 18 VANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred cCCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 3447789999999872 2223455569999999999999965 5679999998754
No 9
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=5.2e-10 Score=100.25 Aligned_cols=52 Identities=25% Similarity=0.744 Sum_probs=40.8
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHHHhc---CCCCcccCcccccCCC
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS---HSTCPLCRNPVDVERS 160 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~i~~~~~ 160 (309)
....+|.|||+.-+ |.| +.. |||+|||.||.+||.. .+.||+|+..|..+.-
T Consensus 45 ~~~FdCNICLd~ak--dPV-vTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 45 GGFFDCNICLDLAK--DPV-VTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV 99 (230)
T ss_pred CCceeeeeeccccC--CCE-Eee-cccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence 34578999999844 344 444 9999999999999965 3459999999987664
No 10
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.94 E-value=8.5e-10 Score=97.10 Aligned_cols=51 Identities=27% Similarity=0.769 Sum_probs=40.7
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHHHhc----------------CCCCcccCcccccCC
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----------------HSTCPLCRNPVDVER 159 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----------------~~~CP~CR~~i~~~~ 159 (309)
.++.+|+||++.+.+ ..+++ |||.||+.||..|+.. ...||+||..|....
T Consensus 16 ~~~~~CpICld~~~d---PVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~ 82 (193)
T PLN03208 16 GGDFDCNICLDQVRD---PVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT 82 (193)
T ss_pred CCccCCccCCCcCCC---cEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence 345789999999764 45566 9999999999999852 347999999997644
No 11
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.93 E-value=7.9e-10 Score=73.52 Aligned_cols=44 Identities=55% Similarity=1.265 Sum_probs=36.4
Q ss_pred eecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCccc
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPV 155 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i 155 (309)
+|+||++.+ .+.+...+ |+|.||..|++.|+.. +..||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999998 33455555 9999999999999987 77899999764
No 12
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.91 E-value=7.3e-10 Score=77.15 Aligned_cols=46 Identities=37% Similarity=0.978 Sum_probs=39.1
Q ss_pred CceecccccccccCcceeecCCCCCc-cchhHHHHHHhcCCCCcccCcccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHG-FHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
+..|.||++.... +.++| |||. |+..|+..|+.....||+||.+|.
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4579999999654 77787 9999 999999999999999999999875
No 13
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=2.9e-09 Score=108.37 Aligned_cols=53 Identities=38% Similarity=0.881 Sum_probs=45.3
Q ss_pred CCCceecccccccccCcc--eeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708 105 KDGLECAVCLSELEDGEK--ARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~--~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
..+..|+||++++..+.. .+.++ |+|+||..|+..|+++..+||+||..+...
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYDY 343 (543)
T ss_pred hcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhcc
Confidence 346789999999988655 67787 999999999999999999999999955443
No 14
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.84 E-value=2e-09 Score=71.06 Aligned_cols=39 Identities=41% Similarity=1.143 Sum_probs=32.6
Q ss_pred ecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCccc
Q 021708 110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLC 151 (309)
Q Consensus 110 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 151 (309)
|+||++.+.+ .+..++ |||.|+.+|+..|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999876 345676 99999999999999888899998
No 15
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.74 E-value=4.4e-09 Score=79.13 Aligned_cols=52 Identities=31% Similarity=0.661 Sum_probs=39.9
Q ss_pred ceecccccccc-----------c-CcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCC
Q 021708 108 LECAVCLSELE-----------D-GEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER 159 (309)
Q Consensus 108 ~~C~ICl~~~~-----------~-~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 159 (309)
+.|+||...|. . ++....-..|+|.||.+||.+||..+..||+||+.....+
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~~ 84 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLAD 84 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEec
Confidence 46888777663 2 3334444459999999999999999999999999876543
No 16
>PHA02926 zinc finger-like protein; Provisional
Probab=98.71 E-value=7.5e-09 Score=92.44 Aligned_cols=51 Identities=31% Similarity=0.842 Sum_probs=39.3
Q ss_pred CCceecccccccccCc-----ceeecCCCCCccchhHHHHHHhcC------CCCcccCcccc
Q 021708 106 DGLECAVCLSELEDGE-----KARLLPKCNHGFHVECIDMWFQSH------STCPLCRNPVD 156 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~-----~~~~lp~C~H~FH~~Ci~~Wl~~~------~~CP~CR~~i~ 156 (309)
.+.+|.|||+.+..+. ..-+|+.|+|.||..||..|...+ .+||+||..+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4578999999875431 234566699999999999999653 45999998765
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.67 E-value=1.5e-08 Score=68.78 Aligned_cols=44 Identities=27% Similarity=0.815 Sum_probs=38.2
Q ss_pred eecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCc
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRN 153 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 153 (309)
.|.||+++|......++++ |||+|+..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999996666778887 9999999999999966778999984
No 18
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.5e-08 Score=87.54 Aligned_cols=50 Identities=26% Similarity=0.715 Sum_probs=41.6
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
...|+|||+.+..... +-.+|||+||..||+..+.....||+|+..|..+
T Consensus 131 ~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccCCCceecchhhccc--cccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 4579999999886433 3236999999999999999999999999877654
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.62 E-value=2.1e-08 Score=66.58 Aligned_cols=39 Identities=44% Similarity=1.188 Sum_probs=33.0
Q ss_pred ecccccccccCcceeecCCCCCccchhHHHHHHh--cCCCCccc
Q 021708 110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ--SHSTCPLC 151 (309)
Q Consensus 110 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~--~~~~CP~C 151 (309)
|+||++.+.... .+++ |+|.||..||.+|+. ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999987643 4676 999999999999998 56679998
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.61 E-value=2.8e-08 Score=63.68 Aligned_cols=38 Identities=45% Similarity=1.246 Sum_probs=32.1
Q ss_pred ecccccccccCcceeecCCCCCccchhHHHHHHh-cCCCCccc
Q 021708 110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ-SHSTCPLC 151 (309)
Q Consensus 110 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~C 151 (309)
|+||++.. .....++ |+|.||..|++.|+. .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999983 3466777 999999999999997 66779987
No 21
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.5e-07 Score=82.70 Aligned_cols=56 Identities=27% Similarity=0.602 Sum_probs=49.4
Q ss_pred CCCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc--------CCCCcccCcccccCCC
Q 021708 103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS--------HSTCPLCRNPVDVERS 160 (309)
Q Consensus 103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~CR~~i~~~~~ 160 (309)
+.+++..|.+|-..+..+|.+|+. |.|+|||+|++.|-.. ++.||.|-..|++...
T Consensus 46 DsDY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~N 109 (299)
T KOG3970|consen 46 DSDYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPIN 109 (299)
T ss_pred hcCCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcc
Confidence 455677899999999999999987 9999999999999854 6789999999998765
No 22
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=6.5e-09 Score=77.58 Aligned_cols=51 Identities=25% Similarity=0.757 Sum_probs=39.7
Q ss_pred Cceeccccccccc---------CcceeecCCCCCccchhHHHHHHhc---CCCCcccCccccc
Q 021708 107 GLECAVCLSELED---------GEKARLLPKCNHGFHVECIDMWFQS---HSTCPLCRNPVDV 157 (309)
Q Consensus 107 ~~~C~ICl~~~~~---------~~~~~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~i~~ 157 (309)
+..|-||...|.. ++...++..|.|.||.+||.+|+.. +..||+||+....
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 3479999998863 3445556679999999999999954 4569999987653
No 23
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.55 E-value=5.2e-08 Score=65.55 Aligned_cols=38 Identities=34% Similarity=0.976 Sum_probs=29.1
Q ss_pred ecccccccccCcceeecCCCCCccchhHHHHHHhcC----CCCccc
Q 021708 110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH----STCPLC 151 (309)
Q Consensus 110 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~C 151 (309)
|+||++.|.+ .+.++ |||.|+..||..|.+.. ..||.|
T Consensus 1 CpiC~~~~~~---Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999987 66776 99999999999999653 469988
No 24
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.54 E-value=6.3e-08 Score=69.98 Aligned_cols=46 Identities=26% Similarity=0.629 Sum_probs=39.7
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
..|+||++.|.+ ...++ |||+|+..||..|+..+.+||+|+..+..
T Consensus 2 ~~Cpi~~~~~~~---Pv~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKD---PVILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCC---CEECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 469999999886 35666 99999999999999888899999987743
No 25
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.51 E-value=6.4e-08 Score=94.39 Aligned_cols=52 Identities=27% Similarity=0.647 Sum_probs=43.6
Q ss_pred CCCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708 103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
.++....|+||++.|.. ..+++ |+|.||..||..|+.....||+||..+...
T Consensus 22 ~Le~~l~C~IC~d~~~~---Pvitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDV---PVLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred ccccccCCCcCchhhhC---ccCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 34566789999999865 34676 999999999999998888899999988653
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.3e-07 Score=86.42 Aligned_cols=50 Identities=34% Similarity=0.812 Sum_probs=41.3
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHH-HHhcCCC-CcccCcccccCC
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDM-WFQSHST-CPLCRNPVDVER 159 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~-Wl~~~~~-CP~CR~~i~~~~ 159 (309)
.+..|.||++.... ...++ |||+||+.||.. |-.++.. ||+||+.+.+++
T Consensus 214 ~d~kC~lC~e~~~~---ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 214 ADYKCFLCLEEPEV---PSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccceeeeecccCC---ccccc-ccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 35689999999664 55666 999999999999 9877766 999999887653
No 27
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=6.3e-08 Score=88.50 Aligned_cols=53 Identities=38% Similarity=0.805 Sum_probs=42.4
Q ss_pred CCceecccccccccCc-------ceeecCCCCCccchhHHHHHH--hcCCCCcccCcccccCC
Q 021708 106 DGLECAVCLSELEDGE-------KARLLPKCNHGFHVECIDMWF--QSHSTCPLCRNPVDVER 159 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~-------~~~~lp~C~H~FH~~Ci~~Wl--~~~~~CP~CR~~i~~~~ 159 (309)
++..|+||-..+...+ ..-.|. |+|+||..||+.|. .++++||+|+..+..+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKR 284 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHhh
Confidence 4567999998886544 455676 99999999999998 55788999998886543
No 28
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.4e-07 Score=90.84 Aligned_cols=50 Identities=30% Similarity=0.849 Sum_probs=38.5
Q ss_pred CceecccccccccCc----c----------eeecCCCCCccchhHHHHHHhc-CCCCcccCccccc
Q 021708 107 GLECAVCLSELEDGE----K----------ARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDV 157 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~----~----------~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~ 157 (309)
..+|+||+.++.--. + ..+.| |.|+||..|+..|+.. +-.||+||.++.+
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 347999999875211 1 23457 9999999999999985 4589999998864
No 29
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.27 E-value=1.6e-07 Score=70.13 Aligned_cols=50 Identities=40% Similarity=0.968 Sum_probs=24.3
Q ss_pred ceecccccccc-cCcc-eeecC--CCCCccchhHHHHHHhc-----------CCCCcccCccccc
Q 021708 108 LECAVCLSELE-DGEK-ARLLP--KCNHGFHVECIDMWFQS-----------HSTCPLCRNPVDV 157 (309)
Q Consensus 108 ~~C~ICl~~~~-~~~~-~~~lp--~C~H~FH~~Ci~~Wl~~-----------~~~CP~CR~~i~~ 157 (309)
.+|.||+..+. .++. ..+.+ +|++.||..||.+||.. ...||.|+.+|..
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 57999999876 3332 23443 69999999999999953 1249999998754
No 30
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.24 E-value=6.9e-07 Score=62.12 Aligned_cols=42 Identities=31% Similarity=0.896 Sum_probs=32.4
Q ss_pred eecccccccccCcceeecCCCC-----CccchhHHHHHHhc--CCCCcccC
Q 021708 109 ECAVCLSELEDGEKARLLPKCN-----HGFHVECIDMWFQS--HSTCPLCR 152 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~Ci~~Wl~~--~~~CP~CR 152 (309)
.|.||++. ..++...+.| |. |.||..||.+|+.. ..+||+|+
T Consensus 1 ~CrIC~~~-~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-GDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCC-CCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 38999993 3445555777 85 89999999999954 44799995
No 31
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.23 E-value=2.8e-07 Score=95.89 Aligned_cols=53 Identities=38% Similarity=0.903 Sum_probs=40.8
Q ss_pred CCCCceecccccccccCc---ceeecCCCCCccchhHHHHHHhc--CCCCcccCcccc
Q 021708 104 FKDGLECAVCLSELEDGE---KARLLPKCNHGFHVECIDMWFQS--HSTCPLCRNPVD 156 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~---~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~i~ 156 (309)
+....+|+||+..+..-+ .-..++.|+|.||..|+.+|+.. +.+||+||..+.
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 455678999998876322 12455669999999999999965 567999997764
No 32
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=9.4e-07 Score=69.79 Aligned_cols=51 Identities=29% Similarity=0.695 Sum_probs=39.4
Q ss_pred ceecccccccc-------------cCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708 108 LECAVCLSELE-------------DGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 108 ~~C~ICl~~~~-------------~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
+.|+||..-+. .++....-..|+|.||..||..||+.+..||+|.+.....
T Consensus 47 DnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~q 110 (114)
T KOG2930|consen 47 DNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVFQ 110 (114)
T ss_pred chhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeEe
Confidence 46999876552 2344444455999999999999999999999998876543
No 33
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.1e-06 Score=86.77 Aligned_cols=49 Identities=24% Similarity=0.689 Sum_probs=38.8
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhc-----CCCCcccCcccccCC
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-----HSTCPLCRNPVDVER 159 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~~i~~~~ 159 (309)
+..|+|||++... ...+. |||+||..||..++.. ...||+||..|....
T Consensus 186 ~~~CPICL~~~~~---p~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd 239 (513)
T KOG2164|consen 186 DMQCPICLEPPSV---PVRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD 239 (513)
T ss_pred CCcCCcccCCCCc---ccccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence 5689999999553 34443 9999999999999854 356999999998744
No 34
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.09 E-value=7.9e-07 Score=83.74 Aligned_cols=51 Identities=27% Similarity=0.669 Sum_probs=44.6
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCC
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER 159 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 159 (309)
+.-+.|.||.+.|.. ..+.| |+|.||.-||..+|..+..||.|+..+.+..
T Consensus 21 D~lLRC~IC~eyf~i---p~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNI---PMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESD 71 (442)
T ss_pred HHHHHHhHHHHHhcC---ceecc-ccchHHHHHHHHHhccCCCCCceecccchhh
Confidence 345689999999986 66787 9999999999999999999999999887654
No 35
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.05 E-value=2.7e-06 Score=57.53 Aligned_cols=38 Identities=29% Similarity=0.792 Sum_probs=22.5
Q ss_pred ecccccccccCc-ceeecCCCCCccchhHHHHHHhcC----CCCc
Q 021708 110 CAVCLSELEDGE-KARLLPKCNHGFHVECIDMWFQSH----STCP 149 (309)
Q Consensus 110 C~ICl~~~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP 149 (309)
|+||++ |...+ ..++|+ |||.|+.+||++|+..+ ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 75544 468898 99999999999999743 3476
No 36
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.99 E-value=3e-06 Score=78.42 Aligned_cols=48 Identities=25% Similarity=0.559 Sum_probs=40.9
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
..+.|-||-+.|.. ...++ |||.||.-||..+|..+..||+||.+-.+
T Consensus 24 s~lrC~IC~~~i~i---p~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 24 SMLRCRICDCRISI---PCETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred hHHHhhhhhheeec---ceecc-cccchhHHHHHHHhcCCCCCccccccHHh
Confidence 34679999999875 44555 99999999999999999999999987654
No 37
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.99 E-value=4.1e-06 Score=62.95 Aligned_cols=49 Identities=24% Similarity=0.577 Sum_probs=37.9
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCcccccC
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDVE 158 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~ 158 (309)
+.+.|+||.+-|.+ ..+++ |||.|...||..|+.. +.+||+|+..+...
T Consensus 3 ~~f~CpIt~~lM~d---PVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRD---PVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SS---EEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhC---ceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 34679999999987 66777 9999999999999988 88999999888753
No 38
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=5.9e-06 Score=78.60 Aligned_cols=51 Identities=35% Similarity=0.810 Sum_probs=43.4
Q ss_pred CCCceecccccccccCcceeecCCCCCc-cchhHHHHHHhcCCCCcccCcccccCC
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHG-FHVECIDMWFQSHSTCPLCRNPVDVER 159 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 159 (309)
+...+|.|||.+-.+ +.+|| |.|+ .|..|.+..-..+..||+||++|....
T Consensus 288 ~~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll 339 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEELL 339 (349)
T ss_pred cCCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHhhh
Confidence 346799999999654 77899 9998 999999998888889999999997543
No 39
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.91 E-value=8.1e-06 Score=77.02 Aligned_cols=52 Identities=23% Similarity=0.616 Sum_probs=37.3
Q ss_pred Cceecccccccc-cCc-ceeecCCCCCccchhHHHHHH-hcCCCCcccCcccccCC
Q 021708 107 GLECAVCLSELE-DGE-KARLLPKCNHGFHVECIDMWF-QSHSTCPLCRNPVDVER 159 (309)
Q Consensus 107 ~~~C~ICl~~~~-~~~-~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~i~~~~ 159 (309)
+..|++|..+-. ..+ .+.+.+ |||.||..|++..+ .....||.|+..+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 357999999632 223 233334 99999999999966 44567999998876543
No 40
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.89 E-value=4.9e-06 Score=81.07 Aligned_cols=49 Identities=33% Similarity=0.876 Sum_probs=38.6
Q ss_pred CCCceecccccccccCcc-eeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 105 KDGLECAVCLSELEDGEK-ARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
.+...|+|||+.|..... ++.. .|.|.||..|+..|-. .+||+||....
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~-~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTI-LCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeee-ecccccchHHHhhccc--CcChhhhhhcC
Confidence 345689999999986553 3333 3999999999999964 58999998665
No 41
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=5.1e-06 Score=75.53 Aligned_cols=45 Identities=33% Similarity=0.938 Sum_probs=38.9
Q ss_pred CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccC
Q 021708 104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 152 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 152 (309)
..+...|+||++.|... .+++ |+|.||..|+..|+.....||.||
T Consensus 10 ~~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred ccccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence 34567899999999986 6787 999999999999998556799999
No 42
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=5.5e-06 Score=58.19 Aligned_cols=46 Identities=26% Similarity=0.636 Sum_probs=35.4
Q ss_pred CceecccccccccCcceeecCCCCCc-cchhHHHHHHh-cCCCCcccCcccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHG-FHVECIDMWFQ-SHSTCPLCRNPVD 156 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~-~~~~CP~CR~~i~ 156 (309)
+++|.||++.-. +.+..+ |||+ .+.+|-.+.++ .+..||+||++|.
T Consensus 7 ~dECTICye~pv--dsVlYt--CGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPV--DSVLYT--CGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcc--hHHHHH--cchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 378999999833 334443 9998 89999766554 6889999999875
No 43
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1.2e-05 Score=77.20 Aligned_cols=45 Identities=29% Similarity=0.932 Sum_probs=33.2
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhc---CCCCcccC
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS---HSTCPLCR 152 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR 152 (309)
.+|.||.+-+-....+--...|||+||..|+..|+.. +..||.|+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 4799994444433344333349999999999999976 35799999
No 44
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=6.6e-06 Score=78.06 Aligned_cols=59 Identities=31% Similarity=0.604 Sum_probs=45.5
Q ss_pred eccCCCCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCcccccCCC
Q 021708 99 FNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDVERS 160 (309)
Q Consensus 99 ~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~~~ 160 (309)
++-..+..+..|.|||+-+.. .+..+.|.|.||.+||..-++. +..||.||..+.....
T Consensus 35 ~~l~~~~~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skrs 94 (381)
T KOG0311|consen 35 VDLAMFDIQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRS 94 (381)
T ss_pred ecHHHhhhhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccccc
Confidence 334445566789999999875 3445569999999999999955 6789999998876543
No 45
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.58 E-value=2e-05 Score=73.39 Aligned_cols=52 Identities=23% Similarity=0.749 Sum_probs=43.8
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhc-----------------------CCCCcccCcccccCC
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-----------------------HSTCPLCRNPVDVER 159 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----------------------~~~CP~CR~~i~~~~ 159 (309)
...|.|||.-|.+++.+.+++ |.|.||..|+..+|.. ...||+||..|..+.
T Consensus 115 ~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~ 189 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE 189 (368)
T ss_pred CCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence 357999999999999898898 9999999999988832 235999999886554
No 46
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.52 E-value=2.7e-05 Score=56.70 Aligned_cols=47 Identities=32% Similarity=0.751 Sum_probs=24.2
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
...|++|.+-|.. ...+..|.|+|+..||..-+.. .||+|+.+.-.+
T Consensus 7 lLrCs~C~~~l~~---pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~q 53 (65)
T PF14835_consen 7 LLRCSICFDILKE---PVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQ 53 (65)
T ss_dssp TTS-SSS-S--SS----B---SSS--B-TTTGGGGTTT--B-SSS--B-S-S
T ss_pred hcCCcHHHHHhcC---CceeccCccHHHHHHhHHhcCC--CCCCcCChHHHH
Confidence 4579999999876 3334459999999999886653 499999877544
No 47
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.51 E-value=2e-05 Score=81.09 Aligned_cols=49 Identities=27% Similarity=0.523 Sum_probs=40.8
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
..|++|+..+.+....-..+ |+|.||.+||+.|-+.-.+||+||..+..
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 35888888887766555554 99999999999999999999999986643
No 48
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=5.9e-05 Score=72.87 Aligned_cols=49 Identities=31% Similarity=0.832 Sum_probs=37.0
Q ss_pred CCceeccccccccc-CcceeecCCCCCccchhHHHHHHhc--CCCCcccCcc
Q 021708 106 DGLECAVCLSELED-GEKARLLPKCNHGFHVECIDMWFQS--HSTCPLCRNP 154 (309)
Q Consensus 106 ~~~~C~ICl~~~~~-~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~ 154 (309)
.+..|+|||+.+.. ++.....+.|||.|...||+.||.+ ...||.|...
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 34679999999864 4444444459999999999999953 3459999764
No 49
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=7e-05 Score=71.98 Aligned_cols=52 Identities=33% Similarity=0.957 Sum_probs=40.2
Q ss_pred CCceecccccccccCc----ceeecCCCCCccchhHHHHHH--hc-----CCCCcccCccccc
Q 021708 106 DGLECAVCLSELEDGE----KARLLPKCNHGFHVECIDMWF--QS-----HSTCPLCRNPVDV 157 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~----~~~~lp~C~H~FH~~Ci~~Wl--~~-----~~~CP~CR~~i~~ 157 (309)
.+.+|.||++.+.+.. ....+|.|.|.||..||+.|- .+ ...||.||.....
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 3568999999976543 123567799999999999998 43 4679999987653
No 50
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=8.5e-05 Score=69.32 Aligned_cols=48 Identities=31% Similarity=0.637 Sum_probs=38.5
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCcccccC
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDVE 158 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~ 158 (309)
..+|+||+..... ...++ |+|.||..||+.-... ..+|++||.+|...
T Consensus 7 ~~eC~IC~nt~n~---Pv~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNC---PVNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCc---Ccccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 3579999998554 45666 9999999999988755 55699999998654
No 51
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.25 E-value=0.0001 Score=71.15 Aligned_cols=45 Identities=29% Similarity=0.844 Sum_probs=37.5
Q ss_pred eecccccccccCcceeecCCCCCccchhHHHHHHhc--CCCCcccCccccc
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS--HSTCPLCRNPVDV 157 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~i~~ 157 (309)
-|-||-+. +..+++-| |||+.|..|+..|-.. ..+||.||..|..
T Consensus 371 LCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 371 LCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 39999887 44578888 9999999999999844 6789999998753
No 52
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.23 E-value=0.00019 Score=69.11 Aligned_cols=50 Identities=28% Similarity=0.733 Sum_probs=39.7
Q ss_pred CCceecccccccccCc-ceeecCCCCCccchhHHHHHHhcC--CCCcccCcccc
Q 021708 106 DGLECAVCLSELEDGE-KARLLPKCNHGFHVECIDMWFQSH--STCPLCRNPVD 156 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~i~ 156 (309)
-+..|..|-+.+..++ ...-|| |.|+||..|+...|.++ .+||.||.-+-
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 4567999999886543 466788 99999999999999664 56999995444
No 53
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00013 Score=75.35 Aligned_cols=50 Identities=30% Similarity=0.771 Sum_probs=38.3
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHHHh-cCCCCcccCcccccC
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ-SHSTCPLCRNPVDVE 158 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~ 158 (309)
..-..|++|-..+.+ .+ +. +|+|+||..|+..-+. ++..||.|.......
T Consensus 641 K~~LkCs~Cn~R~Kd--~v-I~-kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKD--AV-IT-KCGHVFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred HhceeCCCccCchhh--HH-HH-hcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 345689999977553 33 33 5999999999999994 577899998877643
No 54
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.86 E-value=0.00047 Score=57.51 Aligned_cols=46 Identities=20% Similarity=0.574 Sum_probs=34.6
Q ss_pred CceecccccccccCcceeecCCCC------CccchhHHHHHHhcCCCCcccCc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCN------HGFHVECIDMWFQSHSTCPLCRN 153 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~------H~FH~~Ci~~Wl~~~~~CP~CR~ 153 (309)
..+|.||++.+...+.++.++ || |+||.+|+.+|-..+..=|.=|.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR~ 77 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRERNRDPFNRN 77 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhccCCCcccc
Confidence 468999999999856666666 77 99999999999544444454443
No 55
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.00055 Score=58.64 Aligned_cols=40 Identities=38% Similarity=0.785 Sum_probs=31.4
Q ss_pred CceeeccCCCC-CCceecccccccccCcceeecCCCCCccch
Q 021708 95 PVVAFNQQDFK-DGLECAVCLSELEDGEKARLLPKCNHGFHV 135 (309)
Q Consensus 95 p~~~~~~~~~~-~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~ 135 (309)
|.+.|+++... +.-||.||||++..++.+-.|| |-.+||+
T Consensus 164 PrlsYNdDVL~ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 164 PRLSYNDDVLKDDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred cccccccchhcccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 44455554443 3358999999999999999999 9999996
No 56
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.65 E-value=0.00042 Score=65.51 Aligned_cols=51 Identities=24% Similarity=0.566 Sum_probs=43.0
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
.....|.+|-..|-+...+. .|-|.||..||..+|.....||.|...|...
T Consensus 13 n~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ccceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 34568999999998765554 4999999999999999999999998877654
No 57
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0042 Score=58.84 Aligned_cols=47 Identities=23% Similarity=0.448 Sum_probs=37.0
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV 155 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i 155 (309)
+...|+||+.....+..+ .. -|-+||+.|+..++.++..||+=..++
T Consensus 299 ~~~~CpvClk~r~Nptvl-~v--SGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVL-EV--SGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccCCCceE-Ee--cceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 345799999997764333 32 799999999999999999999865544
No 58
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=96.59 E-value=0.0012 Score=68.98 Aligned_cols=49 Identities=29% Similarity=0.724 Sum_probs=40.5
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhc-------CCCCcccCccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-------HSTCPLCRNPV 155 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-------~~~CP~CR~~i 155 (309)
..+|.||++.+.....+.-...|+|+||..||..|-.+ ...||.|....
T Consensus 191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 35899999999988877777679999999999999954 34599998443
No 59
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0013 Score=64.61 Aligned_cols=49 Identities=35% Similarity=0.856 Sum_probs=41.4
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
..+.+|.||+.-+.. ...+| |||.|+..||+.-+.....||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~---pv~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYP---PVVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCC---Ccccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 456789999888776 55667 99999999999987777779999998875
No 60
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.56 E-value=0.0012 Score=47.23 Aligned_cols=41 Identities=34% Similarity=0.715 Sum_probs=26.8
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhc--CCCCcc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS--HSTCPL 150 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~ 150 (309)
...|+|.+..|.+. ++-. +|+|.|-.+.|..||.+ ...||+
T Consensus 11 ~~~CPiT~~~~~~P--V~s~-~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDP--VKSK-KCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSE--EEES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCC--cCcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence 46799999998863 4444 59999999999999943 445998
No 61
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.56 E-value=0.0012 Score=64.79 Aligned_cols=53 Identities=28% Similarity=0.736 Sum_probs=43.3
Q ss_pred CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCC
Q 021708 104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER 159 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 159 (309)
.+++..|++|...+.+.-.. . .|||.||..|+..|+..+..||.|+..+....
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred CcccccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccchhh
Confidence 45667899999998864332 3 39999999999999999999999988776544
No 62
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.48 E-value=0.0027 Score=54.45 Aligned_cols=52 Identities=21% Similarity=0.689 Sum_probs=37.0
Q ss_pred CCCceecccccccccCcceeecCCCCC---ccchhHHHHHHhc--CCCCcccCcccccCC
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNH---GFHVECIDMWFQS--HSTCPLCRNPVDVER 159 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H---~FH~~Ci~~Wl~~--~~~CP~CR~~i~~~~ 159 (309)
..+..|-||.++-. +...-+ +|.. ..|.+|+..|+.. ...|+.|+..+....
T Consensus 6 ~~~~~CRIC~~~~~--~~~~PC-~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~ 62 (162)
T PHA02825 6 LMDKCCWICKDEYD--VVTNYC-NCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKK 62 (162)
T ss_pred CCCCeeEecCCCCC--CccCCc-ccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEE
Confidence 45678999999843 223222 2555 5799999999954 456999999887553
No 63
>PHA02862 5L protein; Provisional
Probab=96.43 E-value=0.0025 Score=53.70 Aligned_cols=49 Identities=22% Similarity=0.735 Sum_probs=35.2
Q ss_pred CceecccccccccCcceeecCCCC---CccchhHHHHHHhc--CCCCcccCcccccC
Q 021708 107 GLECAVCLSELEDGEKARLLPKCN---HGFHVECIDMWFQS--HSTCPLCRNPVDVE 158 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~---H~FH~~Ci~~Wl~~--~~~CP~CR~~i~~~ 158 (309)
++.|-||+++-. +...-+ +|. ...|.+|+..|+.. +..|++|+..+...
T Consensus 2 ~diCWIC~~~~~--e~~~PC-~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDVCD--ERNNFC-GCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCcCC--CCcccc-cccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 357999999843 333322 242 57999999999954 45699999988654
No 64
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.35 E-value=0.0029 Score=43.45 Aligned_cols=41 Identities=29% Similarity=0.936 Sum_probs=26.6
Q ss_pred ecccccccccCcceeecC-CCCC---ccchhHHHHHHh--cCCCCccc
Q 021708 110 CAVCLSELEDGEKARLLP-KCNH---GFHVECIDMWFQ--SHSTCPLC 151 (309)
Q Consensus 110 C~ICl~~~~~~~~~~~lp-~C~H---~FH~~Ci~~Wl~--~~~~CP~C 151 (309)
|-||++.-..++ ..+.| +|.- ..|..||..|+. ....|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 789999977655 33444 2444 789999999996 45669887
No 65
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.34 E-value=0.0025 Score=69.78 Aligned_cols=67 Identities=22% Similarity=0.569 Sum_probs=48.5
Q ss_pred HHHhcCCceeeccCC--CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcC----------CCCcccCcccc
Q 021708 89 AILRKIPVVAFNQQD--FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH----------STCPLCRNPVD 156 (309)
Q Consensus 89 ~~~~~lp~~~~~~~~--~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----------~~CP~CR~~i~ 156 (309)
..-.-||.+..+... .+.++.|.||+.+--.....+.|. |+|+||..|...-|++. -.||+|+..|.
T Consensus 3466 NEE~CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3466 NEEHCLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred chhhcccccccChhhhhcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 344556766654433 345678999998866556667775 99999999998877552 25999999875
No 66
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.24 E-value=0.004 Score=42.98 Aligned_cols=45 Identities=24% Similarity=0.593 Sum_probs=23.3
Q ss_pred ecccccccccCc-ceeecCCCCCccchhHHHHHHh-cCCCCcccCccc
Q 021708 110 CAVCLSELEDGE-KARLLPKCNHGFHVECIDMWFQ-SHSTCPLCRNPV 155 (309)
Q Consensus 110 C~ICl~~~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i 155 (309)
|++|.+++...+ ...-.+ |++.++..|...-+. .+..||-||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~-Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCE-CGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SST-TS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCc-CCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999994433 344454 889999999999886 478899999875
No 67
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.0052 Score=56.94 Aligned_cols=50 Identities=30% Similarity=0.452 Sum_probs=37.7
Q ss_pred CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc--CCCCcccCcccc
Q 021708 104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS--HSTCPLCRNPVD 156 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~i~ 156 (309)
...+.+|++|-+.=.. ..... +|+|+||.-||..-+.. ..+||.|-..+.
T Consensus 236 ~t~~~~C~~Cg~~Pti--P~~~~-~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTI--PHVIG-KCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCC--Ceeec-cccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 4567799999988433 22344 49999999999998864 478999977665
No 68
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.14 E-value=0.0023 Score=63.94 Aligned_cols=50 Identities=32% Similarity=0.729 Sum_probs=38.8
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHHHhc-----CCCCcccCcccccC
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-----HSTCPLCRNPVDVE 158 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~~i~~~ 158 (309)
++..+|-+|-++-++ .+... |.|.||..||..++.. +-+||.|...+..+
T Consensus 534 k~~~~C~lc~d~aed---~i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 534 KGEVECGLCHDPAED---YIESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cCceeecccCChhhh---hHhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 445689999998443 44453 9999999999999843 56899998877654
No 69
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.005 Score=53.68 Aligned_cols=30 Identities=30% Similarity=1.058 Sum_probs=25.1
Q ss_pred CCCccchhHHHHHHhc-----------CCCCcccCcccccC
Q 021708 129 CNHGFHVECIDMWFQS-----------HSTCPLCRNPVDVE 158 (309)
Q Consensus 129 C~H~FH~~Ci~~Wl~~-----------~~~CP~CR~~i~~~ 158 (309)
||.-||.-|+..||+. -..||+|-.+|..+
T Consensus 190 CgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 190 CGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred cCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 9999999999999964 23599999888654
No 70
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.0045 Score=60.25 Aligned_cols=47 Identities=26% Similarity=0.626 Sum_probs=38.3
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhc--------CCCCcccCcc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS--------HSTCPLCRNP 154 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~CR~~ 154 (309)
...|.||+++......+..+| |+|+||..|+..++.. .-.||-|...
T Consensus 184 lf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 357999999988778899999 9999999999999943 2248776543
No 71
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.77 E-value=0.0037 Score=49.43 Aligned_cols=33 Identities=30% Similarity=0.733 Sum_probs=26.7
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHH
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECID 139 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~ 139 (309)
.++..|++|-..+.. ....+.| |||+||..|++
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 445679999999986 4556677 99999999975
No 72
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.012 Score=53.88 Aligned_cols=50 Identities=18% Similarity=0.361 Sum_probs=44.0
Q ss_pred eecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
.|+||.+.+.....+..|..|||+|+.+|+++.+.....||+|-.++...
T Consensus 223 iCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 223 ICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred ecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 59999999998777777767999999999999999999999998877654
No 73
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.0081 Score=57.61 Aligned_cols=43 Identities=33% Similarity=0.688 Sum_probs=31.8
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
.+.|.||+++..+ ...+| |||+-+ |..--.. ...||+||..|.
T Consensus 305 p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs~~-l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 305 PDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCSKH-LPQCPVCRQRIR 347 (355)
T ss_pred CCceEEecCCccc---eeeec-CCcEEE--chHHHhh-CCCCchhHHHHH
Confidence 4579999999665 77888 999965 5444332 344999998875
No 74
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.46 E-value=0.011 Score=55.47 Aligned_cols=43 Identities=35% Similarity=0.721 Sum_probs=34.5
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHh-cCCCCcccCc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ-SHSTCPLCRN 153 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~ 153 (309)
+.|+.|..-+... ..++.|+|.||.+||..-|. ....||.|..
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 7899999887653 33455999999999998884 5677999976
No 75
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.32 E-value=0.0063 Score=53.90 Aligned_cols=44 Identities=23% Similarity=0.614 Sum_probs=37.1
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV 155 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i 155 (309)
+.|.||-.+|.. .++.. |||.||..|...-+.....|-+|....
T Consensus 197 F~C~iCKkdy~s---pvvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYES---PVVTE-CGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccc---hhhhh-cchhHHHHHHHHHhccCCcceecchhh
Confidence 479999999986 34443 999999999999999999999997644
No 76
>PHA03096 p28-like protein; Provisional
Probab=95.26 E-value=0.0084 Score=56.47 Aligned_cols=46 Identities=26% Similarity=0.616 Sum_probs=33.5
Q ss_pred ceecccccccccCc----ceeecCCCCCccchhHHHHHHhc---CCCCcccCc
Q 021708 108 LECAVCLSELEDGE----KARLLPKCNHGFHVECIDMWFQS---HSTCPLCRN 153 (309)
Q Consensus 108 ~~C~ICl~~~~~~~----~~~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~ 153 (309)
.+|.||++...... .--.|+.|.|.|+..|+..|-.. ..+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 57999999976542 23467789999999999999843 334555543
No 77
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.014 Score=55.90 Aligned_cols=48 Identities=23% Similarity=0.527 Sum_probs=40.4
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
++..|+||... .......| |+|.=|..||.+.+.+.+.|=.|+..+..
T Consensus 421 Ed~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 421 EDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred ccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 45679999876 23356777 99999999999999999999999988864
No 78
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.38 E-value=0.025 Score=53.96 Aligned_cols=51 Identities=25% Similarity=0.496 Sum_probs=35.3
Q ss_pred CceecccccccccCcce-eecCCCCCccchhHHHHHHh-cCCCCcccCcccccC
Q 021708 107 GLECAVCLSELEDGEKA-RLLPKCNHGFHVECIDMWFQ-SHSTCPLCRNPVDVE 158 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~-~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~ 158 (309)
++-|++|+++|...|+- .-+| ||...|.-|...--. -+..||.||+.+..+
T Consensus 14 ed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred cccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 34599999999887764 4455 997666666444332 256799999987654
No 79
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=0.0035 Score=60.56 Aligned_cols=49 Identities=20% Similarity=0.593 Sum_probs=42.0
Q ss_pred eecccccccccC-cceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708 109 ECAVCLSELEDG-EKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 109 ~C~ICl~~~~~~-~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
.|+||.+.+... +.+..+. |||.+|.+||.+||.....||.||..+...
T Consensus 198 sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 198 SLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred hhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 599999998865 5566664 999999999999999888999999988643
No 80
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.016 Score=54.23 Aligned_cols=45 Identities=22% Similarity=0.494 Sum_probs=37.9
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
+.|-||...|... ++. +|+|.||..|...-+.....|.+|-+.+.
T Consensus 242 f~c~icr~~f~~p---Vvt-~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYRP---VVT-KCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred ccccccccccccc---hhh-cCCceeehhhhccccccCCcceecccccc
Confidence 4599999999863 334 49999999999999999999999977654
No 81
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.21 E-value=0.027 Score=37.91 Aligned_cols=41 Identities=29% Similarity=0.831 Sum_probs=22.8
Q ss_pred ecccccccccCcceeecCCCCCccchhHHHHHHhcCC--CCccc
Q 021708 110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHS--TCPLC 151 (309)
Q Consensus 110 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~--~CP~C 151 (309)
|.+|.+-+..|..-... .|+=.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 66777776655443222 3888999999999997655 79988
No 82
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.20 E-value=0.017 Score=52.70 Aligned_cols=46 Identities=24% Similarity=0.606 Sum_probs=34.2
Q ss_pred eecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
-|..|..-=. ++...++. |.|+||..|...-.. ..||+|+..|-..
T Consensus 5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~~~--~~C~lCkk~ir~i 50 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKASSP--DVCPLCKKSIRII 50 (233)
T ss_pred EeccccccCC-CCceeeee-chhhhhhhhcccCCc--cccccccceeeee
Confidence 4777776544 66777776 999999999776433 2899999987543
No 83
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.19 E-value=0.024 Score=59.99 Aligned_cols=38 Identities=24% Similarity=0.461 Sum_probs=30.0
Q ss_pred CCCCceecccccccccCcceeecCCCCCccchhHHHHHHh
Q 021708 104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ 143 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~ 143 (309)
.+.++.|.+|...+... ...+.| |||.||++||.+-..
T Consensus 814 ~ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHVL 851 (911)
T ss_pred ecCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHHH
Confidence 35567899999998764 445566 999999999998763
No 84
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.09 E-value=0.024 Score=59.67 Aligned_cols=40 Identities=25% Similarity=0.746 Sum_probs=31.3
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRN 153 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 153 (309)
..|..|-..+.-.-. -. .|||.||.+|+. .....||.|+.
T Consensus 841 skCs~C~~~LdlP~V-hF--~CgHsyHqhC~e---~~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFV-HF--LCGHSYHQHCLE---DKEDKCPKCLP 880 (933)
T ss_pred eeecccCCcccccee-ee--ecccHHHHHhhc---cCcccCCccch
Confidence 579999998875422 22 399999999999 45667999987
No 85
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.83 E-value=0.074 Score=49.44 Aligned_cols=54 Identities=22% Similarity=0.433 Sum_probs=42.0
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCC
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER 159 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 159 (309)
.....|+|+..+|........+-.|||+|-..+|..-- ....||+|-.++...+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEED 164 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCC
Confidence 34568999999997655555554599999999999973 3567999998887543
No 86
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.044 Score=51.52 Aligned_cols=47 Identities=28% Similarity=0.735 Sum_probs=38.4
Q ss_pred ceecccccccccCc---ceeecCCCCCccchhHHHHHHhcC-CCCcccCccc
Q 021708 108 LECAVCLSELEDGE---KARLLPKCNHGFHVECIDMWFQSH-STCPLCRNPV 155 (309)
Q Consensus 108 ~~C~ICl~~~~~~~---~~~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~i 155 (309)
.+|-||-++|...+ ..+.| +|||.|+..|+..-+... ..||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l-~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVL-KCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCccc-ccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 57999999998764 24666 499999999999888654 4599999986
No 87
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.013 Score=54.79 Aligned_cols=42 Identities=26% Similarity=0.651 Sum_probs=31.7
Q ss_pred CceecccccccccCcceeecCCCCCc-cchhHHHHHHhcCCCCcccCcccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHG-FHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
..-|.||++.-. ...+|+ |||. -|.+|-... ..||+||+-|.
T Consensus 300 ~~LC~ICmDaP~---DCvfLe-CGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPR---DCVFLE-CGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCc---ceEEee-cCcEEeehhhcccc----ccCchHHHHHH
Confidence 346999999843 366787 9997 788896553 37999998764
No 88
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=93.55 E-value=0.083 Score=37.35 Aligned_cols=34 Identities=29% Similarity=0.845 Sum_probs=30.7
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHH
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDM 140 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~ 140 (309)
...|.+|-+.|..++.+.+.|.|+-.+|..|.+.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 4579999999999999999999999999999655
No 89
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=93.34 E-value=0.045 Score=51.22 Aligned_cols=44 Identities=30% Similarity=0.668 Sum_probs=37.5
Q ss_pred eecccccccccCcc-eeecCCCCCccchhHHHHHHhcCCCCcccCc
Q 021708 109 ECAVCLSELEDGEK-ARLLPKCNHGFHVECIDMWFQSHSTCPLCRN 153 (309)
Q Consensus 109 ~C~ICl~~~~~~~~-~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 153 (309)
.|+||.+.+..... +..++ |||.-|..|+......+++||+|..
T Consensus 160 ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 49999999776554 45665 9999999999999988899999988
No 90
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.03 E-value=0.055 Score=56.47 Aligned_cols=23 Identities=35% Similarity=0.941 Sum_probs=21.5
Q ss_pred CCCCccchhHHHHHHhcCCCCcc
Q 021708 128 KCNHGFHVECIDMWFQSHSTCPL 150 (309)
Q Consensus 128 ~C~H~FH~~Ci~~Wl~~~~~CP~ 150 (309)
.|+|+-|..|...|+..+..||.
T Consensus 1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred cccccccHHHHHHHHhcCCcCCC
Confidence 49999999999999999999985
No 91
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.27 E-value=0.17 Score=48.51 Aligned_cols=47 Identities=23% Similarity=0.663 Sum_probs=36.6
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHH--HhcCCCCcccCccc
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMW--FQSHSTCPLCRNPV 155 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W--l~~~~~CP~CR~~i 155 (309)
+++..|.||-+.+.- .-++| |+|..|-.|.... |...+.||+||...
T Consensus 59 Een~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 59 EENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 345679999988653 56788 9999999997653 46678899999865
No 92
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.64 E-value=0.072 Score=50.35 Aligned_cols=43 Identities=35% Similarity=0.797 Sum_probs=30.8
Q ss_pred eecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
.|--|--.+.. .=|+.| |+|+||.+|... ...+.||.|-..|.
T Consensus 92 fCd~Cd~PI~I--YGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 92 FCDRCDFPIAI--YGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred eecccCCccee--eecccc-cchhhhhhhhhc--CccccCcCcccHHH
Confidence 57777555432 347888 999999999765 33568999987663
No 93
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=91.38 E-value=0.11 Score=36.80 Aligned_cols=45 Identities=29% Similarity=0.691 Sum_probs=32.0
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
..|..|... +.+-.++| |+|+.+..|.+.+ +-.-||.|..++...
T Consensus 8 ~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFD 52 (55)
T ss_pred eeEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccCC
Confidence 346666554 33345777 9999999998775 334699999888654
No 94
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.35 E-value=0.075 Score=55.79 Aligned_cols=48 Identities=31% Similarity=0.710 Sum_probs=37.2
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhc--CCCCcccCcccccCCC
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS--HSTCPLCRNPVDVERS 160 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~i~~~~~ 160 (309)
..|.||++ .+.....+ |+|.||.+|+..-+.. ...||+||..+.....
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 57999999 34455565 9999999999998854 2359999998876543
No 95
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=91.34 E-value=0.19 Score=43.15 Aligned_cols=35 Identities=23% Similarity=0.620 Sum_probs=21.5
Q ss_pred CceecccccccccCcceeecC-----C-----CCC-ccchhHHHHHHh
Q 021708 107 GLECAVCLSELEDGEKARLLP-----K-----CNH-GFHVECIDMWFQ 143 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp-----~-----C~H-~FH~~Ci~~Wl~ 143 (309)
+..|+|||+-=.. .|.++- . |+- .-|..||+++-+
T Consensus 2 d~~CpICme~PHN--AVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHN--AVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCc--eEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 4679999997432 222210 0 443 358899999864
No 96
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.12 E-value=0.28 Score=47.66 Aligned_cols=29 Identities=34% Similarity=0.973 Sum_probs=22.4
Q ss_pred CCCccchhHHHHHHhc-------------CCCCcccCccccc
Q 021708 129 CNHGFHVECIDMWFQS-------------HSTCPLCRNPVDV 157 (309)
Q Consensus 129 C~H~FH~~Ci~~Wl~~-------------~~~CP~CR~~i~~ 157 (309)
|.-++|.+|+-+|+.. +-.||+||+....
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 5567899999999943 3469999987643
No 97
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.80 E-value=0.71 Score=45.13 Aligned_cols=45 Identities=22% Similarity=0.493 Sum_probs=38.7
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhcCC---CCccc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHS---TCPLC 151 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~---~CP~C 151 (309)
..+.|+|=.+.-.++..+..|. |||+...+-|.+...++. .||+|
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred ceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCC
Confidence 4568999998888888888887 999999999999987654 59999
No 98
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=90.68 E-value=0.16 Score=53.56 Aligned_cols=54 Identities=22% Similarity=0.536 Sum_probs=38.7
Q ss_pred CCCceecccccccccCcceeecCCCC---CccchhHHHHHHhc--CCCCcccCcccccC
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCN---HGFHVECIDMWFQS--HSTCPLCRNPVDVE 158 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~---H~FH~~Ci~~Wl~~--~~~CP~CR~~i~~~ 158 (309)
+++..|-||..+=..++....-.||. ...|.+|+.+|+.- ...|-+|+.++..+
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 34578999999976666554332344 45899999999964 34599999877543
No 99
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.62 E-value=0.11 Score=46.80 Aligned_cols=39 Identities=33% Similarity=0.761 Sum_probs=30.2
Q ss_pred ecccccccccCcceeecCCCCCc-cchhHHHHHHhcCCCCcccCcccc
Q 021708 110 CAVCLSELEDGEKARLLPKCNHG-FHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 110 C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
|-.|.+. ...+.++| |.|+ +|..|-.. -..||+|+....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhh
Confidence 8888876 44588999 9987 88899665 245999987654
No 100
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=90.30 E-value=0.15 Score=47.87 Aligned_cols=51 Identities=27% Similarity=0.686 Sum_probs=36.7
Q ss_pred CceecccccccccCcc-eeecCCCC-----CccchhHHHHHHh--cCCCCcccCcccccC
Q 021708 107 GLECAVCLSELEDGEK-ARLLPKCN-----HGFHVECIDMWFQ--SHSTCPLCRNPVDVE 158 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~-~~~lp~C~-----H~FH~~Ci~~Wl~--~~~~CP~CR~~i~~~ 158 (309)
+..|-||.++...... ..+.| |. +..|..|++.|+. ....|.+|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4679999998764432 33444 54 6689999999996 566799998766543
No 101
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.70 E-value=0.16 Score=46.87 Aligned_cols=55 Identities=24% Similarity=0.557 Sum_probs=37.0
Q ss_pred CCCCceecccccccccCcce-eecCCCC-----CccchhHHHHHHhc--------CCCCcccCcccccCC
Q 021708 104 FKDGLECAVCLSELEDGEKA-RLLPKCN-----HGFHVECIDMWFQS--------HSTCPLCRNPVDVER 159 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~-~~lp~C~-----H~FH~~Ci~~Wl~~--------~~~CP~CR~~i~~~~ 159 (309)
.+.+..|=||+..=+++... .+-| |. |-.|..||..|+.. .-+||-|+..+....
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~ 85 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVF 85 (293)
T ss_pred cccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeec
Confidence 34456799999874443322 3344 43 78999999999932 224999999876543
No 102
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=89.33 E-value=0.12 Score=47.34 Aligned_cols=49 Identities=29% Similarity=0.607 Sum_probs=36.4
Q ss_pred Cceecccccccc--cCcceeecCCCCCccchhHHHHHHhcCC-CCc--ccCccc
Q 021708 107 GLECAVCLSELE--DGEKARLLPKCNHGFHVECIDMWFQSHS-TCP--LCRNPV 155 (309)
Q Consensus 107 ~~~C~ICl~~~~--~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CP--~CR~~i 155 (309)
+..|+||..+.. .+..+.+-|.|.|..|..|++.-|..+. .|| -|...+
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 457999998733 3334555667999999999999997655 599 776544
No 103
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=89.05 E-value=0.3 Score=45.84 Aligned_cols=48 Identities=21% Similarity=0.576 Sum_probs=34.6
Q ss_pred eeccccccc-ccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCcccc
Q 021708 109 ECAVCLSEL-EDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVD 156 (309)
Q Consensus 109 ~C~ICl~~~-~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~ 156 (309)
.|++|-.+. ...+...+...|+|..|..|++..+.. ...||-|...+-
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 489997763 333433333349999999999999954 567999987664
No 104
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=88.92 E-value=0.13 Score=56.52 Aligned_cols=45 Identities=27% Similarity=0.777 Sum_probs=37.2
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV 155 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i 155 (309)
..|.||++.+.....+. .|||.++..|...|+..+..||.|+...
T Consensus 1154 ~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred cchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhhhh
Confidence 47999999988533332 3999999999999999999999998443
No 105
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.39 E-value=0.28 Score=50.37 Aligned_cols=49 Identities=31% Similarity=0.809 Sum_probs=39.8
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCCCC
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSN 161 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~~ 161 (309)
+....|.||++++ ..+..+ |. |..|+.+|+..+..||+|+..+..+...
T Consensus 477 ~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~ 525 (543)
T KOG0802|consen 477 EPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDDFL 525 (543)
T ss_pred cccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhccccc
Confidence 3456799999998 355565 88 9999999999999999999888765543
No 106
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=86.72 E-value=0.44 Score=45.34 Aligned_cols=45 Identities=29% Similarity=0.558 Sum_probs=33.8
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
+-++|+||.+.+... +.... =||+.|..|-.+ ....||.||.++.
T Consensus 47 ~lleCPvC~~~l~~P--i~QC~-nGHlaCssC~~~---~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPP--IFQCD-NGHLACSSCRTK---VSNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCccc--ceecC-CCcEehhhhhhh---hcccCCccccccc
Confidence 346899999998864 33332 469999998653 4667999999887
No 107
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.00 E-value=0.27 Score=50.66 Aligned_cols=43 Identities=23% Similarity=0.649 Sum_probs=31.7
Q ss_pred CceecccccccccCc-ceeecCCCCCccchhHHHHHHhcCCCCcccCc
Q 021708 107 GLECAVCLSELEDGE-KARLLPKCNHGFHVECIDMWFQSHSTCPLCRN 153 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 153 (309)
-..|.||+..|.... ..+.+- |||..|.+|+..-.. .+|| |+.
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~-cghtic~~c~~~lyn--~scp-~~~ 54 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQ-CGHTICGHCVQLLYN--ASCP-TKR 54 (861)
T ss_pred HhhchHHHHHHHHHhcCccccc-ccchHHHHHHHhHhh--ccCC-CCc
Confidence 457999998886544 344554 999999999998665 5788 543
No 108
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=85.75 E-value=1.9 Score=28.25 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021708 26 IAIIVLFFVVVFILFLHLYAKWF 48 (309)
Q Consensus 26 i~ii~l~~vv~~iill~~~~~~~ 48 (309)
++..++..++++++.+++|+++|
T Consensus 8 IIv~V~vg~~iiii~~~~YaCcy 30 (38)
T PF02439_consen 8 IIVAVVVGMAIIIICMFYYACCY 30 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455555555
No 109
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=85.08 E-value=0.28 Score=33.71 Aligned_cols=29 Identities=24% Similarity=0.895 Sum_probs=21.9
Q ss_pred CC-CccchhHHHHHHhcCCCCcccCccccc
Q 021708 129 CN-HGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 129 C~-H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
|+ |..+-.|+...|.....||+|..++..
T Consensus 18 C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp -SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred ecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 76 999999999999999999999988764
No 110
>PF15050 SCIMP: SCIMP protein
Probab=84.14 E-value=2.3 Score=34.93 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 021708 23 IMVIAIIVLFFVVVFILFLHLYAKWFWWRIEQT 55 (309)
Q Consensus 23 i~~i~ii~l~~vv~~iill~~~~~~~~~R~~~~ 55 (309)
++++++.++++.+++-++|++..+|.++..+++
T Consensus 9 WiiLAVaII~vS~~lglIlyCvcR~~lRqGkkw 41 (133)
T PF15050_consen 9 WIILAVAIILVSVVLGLILYCVCRWQLRQGKKW 41 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 344444444333444444444455554333333
No 111
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.39 E-value=0.43 Score=46.93 Aligned_cols=37 Identities=24% Similarity=0.628 Sum_probs=27.7
Q ss_pred CceecccccccccC-cceeecCCCCCccchhHHHHHHhc
Q 021708 107 GLECAVCLSELEDG-EKARLLPKCNHGFHVECIDMWFQS 144 (309)
Q Consensus 107 ~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~Ci~~Wl~~ 144 (309)
..+|.||+.+.... +... ..+|+|.||.+|+...+..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~-~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFS-VLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHH-HhcccchhhhHHhHHHhhh
Confidence 46899999554444 4444 4469999999999999964
No 112
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=82.38 E-value=0.92 Score=40.60 Aligned_cols=41 Identities=32% Similarity=0.839 Sum_probs=30.1
Q ss_pred Cceecccccc-----cccCcceeecCCCCCccchhHHHHHHhcCCCCcccCc
Q 021708 107 GLECAVCLSE-----LEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRN 153 (309)
Q Consensus 107 ~~~C~ICl~~-----~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 153 (309)
+..|-||-++ |+. +.+...++|+-+||..|... ..||-|.+
T Consensus 152 GfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~-----~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK-----KSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC-----CCCCCcHh
Confidence 4678888753 222 35667888999999999773 67999953
No 113
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.48 E-value=0.71 Score=43.47 Aligned_cols=30 Identities=23% Similarity=0.652 Sum_probs=23.8
Q ss_pred CCCccchhHHHHHHhc-------------CCCCcccCcccccC
Q 021708 129 CNHGFHVECIDMWFQS-------------HSTCPLCRNPVDVE 158 (309)
Q Consensus 129 C~H~FH~~Ci~~Wl~~-------------~~~CP~CR~~i~~~ 158 (309)
|..++|.+|+-.|+.. +-+||+||+.....
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 6678999999999843 45799999977643
No 114
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=81.18 E-value=0.85 Score=48.20 Aligned_cols=50 Identities=14% Similarity=0.184 Sum_probs=35.0
Q ss_pred CceecccccccccCc---ceeecCCCCCccchhHHHHHHhc------CCCCcccCcccc
Q 021708 107 GLECAVCLSELEDGE---KARLLPKCNHGFHVECIDMWFQS------HSTCPLCRNPVD 156 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~---~~~~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~i~ 156 (309)
...|.+|..++..++ .+..+..|+|-||..||..|+.+ +-.|+.|...|.
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 346888888777632 22223359999999999999943 445888887664
No 115
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=80.41 E-value=1.7 Score=30.45 Aligned_cols=42 Identities=31% Similarity=0.846 Sum_probs=24.0
Q ss_pred ecccccccccCc------ceeecCCCCCccchhHHHHHH-hcCCCCcccC
Q 021708 110 CAVCLSELEDGE------KARLLPKCNHGFHVECIDMWF-QSHSTCPLCR 152 (309)
Q Consensus 110 C~ICl~~~~~~~------~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR 152 (309)
|--|+..|.... .....|+|++.|+.+| |.++ +.-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 666777777642 3567888999999999 5555 4456799884
No 116
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=80.26 E-value=0.92 Score=42.21 Aligned_cols=48 Identities=25% Similarity=0.648 Sum_probs=35.3
Q ss_pred ceecccccccccCcceeec---CCCCCccchhHHHHHHhc---------CCCCcccCccc
Q 021708 108 LECAVCLSELEDGEKARLL---PKCNHGFHVECIDMWFQS---------HSTCPLCRNPV 155 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~l---p~C~H~FH~~Ci~~Wl~~---------~~~CP~CR~~i 155 (309)
.+|.+|.+++...+..+.. +.|+-++|..|+..-+.. ...||.|+..+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 5899999999655554432 237889999999995532 45699999854
No 117
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=79.16 E-value=8.6 Score=31.28 Aligned_cols=21 Identities=19% Similarity=0.531 Sum_probs=15.4
Q ss_pred HHhcCCCCcccCcccccCCCC
Q 021708 141 WFQSHSTCPLCRNPVDVERSN 161 (309)
Q Consensus 141 Wl~~~~~CP~CR~~i~~~~~~ 161 (309)
-+.+.+.|+.|+.++..+...
T Consensus 81 mLGr~D~CM~C~~pLTLd~~l 101 (114)
T PF11023_consen 81 MLGRVDACMHCKEPLTLDPSL 101 (114)
T ss_pred hhchhhccCcCCCcCccCchh
Confidence 345567899999999876543
No 118
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=78.96 E-value=1.1 Score=26.94 Aligned_cols=24 Identities=29% Similarity=0.787 Sum_probs=16.5
Q ss_pred eecccccccccCcceeecCCCCCccc
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFH 134 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH 134 (309)
.|+-|...+.. ..+..|.|||.|-
T Consensus 2 ~CP~C~~~V~~--~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 2 TCPECGAEVPE--SAKFCPHCGYDFE 25 (26)
T ss_pred cCCCCcCCchh--hcCcCCCCCCCCc
Confidence 47788877643 3556777888873
No 119
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=78.58 E-value=1.4 Score=46.38 Aligned_cols=40 Identities=28% Similarity=0.571 Sum_probs=31.5
Q ss_pred eecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcc
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 150 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~ 150 (309)
.|.+|-..+.. ....++.|+|.=|.+|+.+|+..+.-||.
T Consensus 781 ~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred Cceeecceeee--eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 58888777653 22345569999999999999998888877
No 120
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=78.39 E-value=0.56 Score=49.00 Aligned_cols=47 Identities=36% Similarity=0.868 Sum_probs=36.2
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhc---CCCCcccCccccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS---HSTCPLCRNPVDV 157 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~i~~ 157 (309)
..+|.||+..+... ..+ +|.|.|+..|+..-|.. ...||+|+..+..
T Consensus 21 ~lEc~ic~~~~~~p---~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hccCCceeEEeecc---chh-hhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 36899999998865 233 59999999998887754 3469999976653
No 121
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=78.20 E-value=3.6 Score=34.04 Aligned_cols=12 Identities=33% Similarity=0.141 Sum_probs=4.4
Q ss_pred hHHHHHHHHHHH
Q 021708 23 IMVIAIIVLFFV 34 (309)
Q Consensus 23 i~~i~ii~l~~v 34 (309)
|..|++.+++.+
T Consensus 66 i~~Ii~gv~aGv 77 (122)
T PF01102_consen 66 IIGIIFGVMAGV 77 (122)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeehhHHHHHHH
Confidence 333333333333
No 122
>PHA02975 hypothetical protein; Provisional
Probab=77.30 E-value=5.3 Score=29.56 Aligned_cols=29 Identities=28% Similarity=0.602 Sum_probs=19.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021708 20 TGQIMVIAIIVLFFVVVFILFLHLYAKWF 48 (309)
Q Consensus 20 ~~~i~~i~ii~l~~vv~~iill~~~~~~~ 48 (309)
.+..+.++|++++++++.++++++|.|..
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~~flYLK~~ 68 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVFTFLYLKLM 68 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555566666777777777777777753
No 123
>PHA02650 hypothetical protein; Provisional
Probab=76.62 E-value=5 Score=30.50 Aligned_cols=29 Identities=17% Similarity=0.115 Sum_probs=19.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021708 21 GQIMVIAIIVLFFVVVFILFLHLYAKWFW 49 (309)
Q Consensus 21 ~~i~~i~ii~l~~vv~~iill~~~~~~~~ 49 (309)
+..+.++|++++++++.++++++|.|..+
T Consensus 46 ~~~~~~~ii~i~~v~i~~l~~flYLK~~~ 74 (81)
T PHA02650 46 WFNGQNFIFLIFSLIIVALFSFFVFKGYT 74 (81)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455555567777777778888888763
No 124
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=75.81 E-value=3.4 Score=38.93 Aligned_cols=29 Identities=17% Similarity=0.374 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 021708 27 AIIVLFFVVVFILFLHLYAKWFWWRIEQT 55 (309)
Q Consensus 27 ~ii~l~~vv~~iill~~~~~~~~~R~~~~ 55 (309)
.|..++++++.++++++|++.|.+|++.|
T Consensus 262 giaalvllil~vvliiLYiWlyrrRK~sw 290 (295)
T TIGR01478 262 GIAALVLIILTVVLIILYIWLYRRRKKSW 290 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34455555555555566666655444433
No 125
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=75.59 E-value=4.3 Score=33.55 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 021708 33 FVVVFILFLHLYAKWFWWR 51 (309)
Q Consensus 33 ~vv~~iill~~~~~~~~~R 51 (309)
+|++-+|++++++.|+.+|
T Consensus 72 gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 72 GVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444333
No 126
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=75.40 E-value=1.6 Score=39.39 Aligned_cols=45 Identities=27% Similarity=0.652 Sum_probs=34.7
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV 155 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i 155 (309)
..|.+|..-.-.+ +.+..|+-.+|..|+..++.+...||.|..-+
T Consensus 182 k~Cn~Ch~LvIqg---~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w 226 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG---IRCGSCNIQYHRGCIQTYLQRRDICPHCGDLW 226 (235)
T ss_pred HHHhHhHHHhhee---eccCcccchhhhHHHHHHhcccCcCCchhccc
Confidence 4699999876543 22334888899999999999999999995433
No 127
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=75.15 E-value=2.1 Score=35.85 Aligned_cols=48 Identities=21% Similarity=0.597 Sum_probs=33.1
Q ss_pred ceecccccccccCcceeecCC--CCCccchhHHHHHH---hcCCCCcccCccccc
Q 021708 108 LECAVCLSELEDGEKARLLPK--CNHGFHVECIDMWF---QSHSTCPLCRNPVDV 157 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~--C~H~FH~~Ci~~Wl---~~~~~CP~CR~~i~~ 157 (309)
-+|.||.|.-.+.. .+-|+ ||-..|..|.-..+ ..+..||+|+...-.
T Consensus 81 YeCnIC~etS~ee~--FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 81 YECNICKETSAEER--FLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred eeccCcccccchhh--cCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 47999998855422 22222 99889988765544 347889999987754
No 128
>PTZ00370 STEVOR; Provisional
Probab=74.63 E-value=3.4 Score=38.95 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 021708 27 AIIVLFFVVVFILFLHLYAKWFWWRIEQT 55 (309)
Q Consensus 27 ~ii~l~~vv~~iill~~~~~~~~~R~~~~ 55 (309)
.|..++++++.++++++|++.|.+|.+.|
T Consensus 258 giaalvllil~vvliilYiwlyrrRK~sw 286 (296)
T PTZ00370 258 GIAALVLLILAVVLIILYIWLYRRRKNSW 286 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 33444444555555556666554444333
No 129
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=74.47 E-value=1.1 Score=46.22 Aligned_cols=44 Identities=27% Similarity=0.729 Sum_probs=28.1
Q ss_pred CCceecccccc-----cccCcceeecCCCCCccchhHHHHHHhcCCCCcccCc
Q 021708 106 DGLECAVCLSE-----LEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRN 153 (309)
Q Consensus 106 ~~~~C~ICl~~-----~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 153 (309)
....|.+|... |. .+.++.+-.|+++||..|+.. .+..||.|-+
T Consensus 510 ~gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred CeeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhc---cCCCCCchHH
Confidence 35678888322 22 233444445999999999665 3444999953
No 130
>PF15102 TMEM154: TMEM154 protein family
Probab=73.95 E-value=0.75 Score=39.10 Aligned_cols=10 Identities=40% Similarity=0.900 Sum_probs=6.2
Q ss_pred hhHHHHHHhc
Q 021708 135 VECIDMWFQS 144 (309)
Q Consensus 135 ~~Ci~~Wl~~ 144 (309)
.+=|++|+..
T Consensus 127 meeldkwm~s 136 (146)
T PF15102_consen 127 MEELDKWMNS 136 (146)
T ss_pred HHHHHhHHHh
Confidence 4457788743
No 131
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=73.82 E-value=4.4 Score=30.81 Aligned_cols=55 Identities=18% Similarity=0.448 Sum_probs=22.3
Q ss_pred Cceeccccccccc---CcceeecCCCCCccchhHHHHHH-hcCCCCcccCcccccCCCC
Q 021708 107 GLECAVCLSELED---GEKARLLPKCNHGFHVECIDMWF-QSHSTCPLCRNPVDVERSN 161 (309)
Q Consensus 107 ~~~C~ICl~~~~~---~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~i~~~~~~ 161 (309)
...|.||-+++.. ++.....-.|+--.+..|++-=. ..++.||-|+..+...++.
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgs 67 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGS 67 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT-
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCC
Confidence 4579999999753 34333333466778899988666 4467899999888766543
No 132
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.36 E-value=4.3 Score=33.06 Aligned_cols=45 Identities=22% Similarity=0.431 Sum_probs=34.4
Q ss_pred ceecccccccccC----------cceeecCCCCCccchhHHHHHHhcCCCCcccC
Q 021708 108 LECAVCLSELEDG----------EKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 152 (309)
Q Consensus 108 ~~C~ICl~~~~~~----------~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 152 (309)
..|--|+..|... ...-..++|++.|+.+|=.-|-+.-.+||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 4699999988643 11234678999999999777767777899995
No 134
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=72.03 E-value=3.3 Score=25.76 Aligned_cols=36 Identities=31% Similarity=0.649 Sum_probs=25.2
Q ss_pred ecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccc
Q 021708 110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV 155 (309)
Q Consensus 110 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i 155 (309)
|..|.+.+...+..... =+..||.+| ..|..|...|
T Consensus 2 C~~C~~~i~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRA--LGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEe--CCccccccC--------CCCcccCCcC
Confidence 78888888765333332 467899888 5688887665
No 135
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=70.53 E-value=8.2 Score=40.92 Aligned_cols=47 Identities=28% Similarity=0.590 Sum_probs=32.3
Q ss_pred CCceeccccccccc---------CcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 106 DGLECAVCLSELED---------GEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 106 ~~~~C~ICl~~~~~---------~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
++..|+-|...|-. +....++|.|+|..|..=|.. +..||+|...+.
T Consensus 1130 ~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1130 YDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSMES 1185 (1189)
T ss_pred cCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChhh
Confidence 34567777666631 123567888999999877654 578999987654
No 136
>PHA02844 putative transmembrane protein; Provisional
Probab=70.30 E-value=5.5 Score=29.94 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021708 22 QIMVIAIIVLFFVVVFILFLHLYAKWF 48 (309)
Q Consensus 22 ~i~~i~ii~l~~vv~~iill~~~~~~~ 48 (309)
..+.+.|++++++++.++++++|.|..
T Consensus 46 ~~~~~~ii~i~~v~~~~~~~flYLK~~ 72 (75)
T PHA02844 46 SSTKIWILTIIFVVFATFLTFLYLKAV 72 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 334444455666677777777887755
No 137
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=69.41 E-value=12 Score=29.79 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=23.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021708 20 TGQIMVIAIIVLFFVVVFILFLHLYAKWFWWRIEQ 54 (309)
Q Consensus 20 ~~~i~~i~ii~l~~vv~~iill~~~~~~~~~R~~~ 54 (309)
.+.-|.+++.+++.+++..+|+++.+|+-.||+..
T Consensus 13 ~g~sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~ 47 (102)
T PF15176_consen 13 GGRSWPFLVGVVVTALVTSLLIALAAKCPVWYKYL 47 (102)
T ss_pred CCcccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 36666666666666777777777777777766443
No 138
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=69.35 E-value=2.3 Score=42.23 Aligned_cols=35 Identities=29% Similarity=0.659 Sum_probs=28.2
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHHHh
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ 143 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~ 143 (309)
++.+.|+||..-|.+ .++|| |+|..|..|...-+.
T Consensus 2 eeelkc~vc~~f~~e---piil~-c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYRE---PIILP-CSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccC---ceEee-cccHHHHHHHHhhcc
Confidence 456789999998876 66787 999999999876543
No 139
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=68.84 E-value=2.9 Score=26.98 Aligned_cols=26 Identities=27% Similarity=0.632 Sum_probs=17.9
Q ss_pred eecccccccccCcc-------eeecCCCCCccc
Q 021708 109 ECAVCLSELEDGEK-------ARLLPKCNHGFH 134 (309)
Q Consensus 109 ~C~ICl~~~~~~~~-------~~~lp~C~H~FH 134 (309)
.|+-|...|..++. ....++|+|+|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 58888877765443 345667888885
No 140
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.55 E-value=1.8 Score=45.79 Aligned_cols=44 Identities=20% Similarity=0.491 Sum_probs=31.7
Q ss_pred CCceecccccccccC----cceeecCCCCCccchhHHHHHHhcCCCCccc
Q 021708 106 DGLECAVCLSELEDG----EKARLLPKCNHGFHVECIDMWFQSHSTCPLC 151 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 151 (309)
....|..|++..... +.+.++ +|+|+||..|+..-..++. |-.|
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~-~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVF-HCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEE-EccchhhhcccccHHHhcc-cChh
Confidence 334799999986532 345556 4999999999998886655 5444
No 141
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=68.18 E-value=2.6 Score=28.59 Aligned_cols=43 Identities=30% Similarity=0.607 Sum_probs=30.5
Q ss_pred eecccccccccCcceeecCCCCCccchhHHHHHHh------cCCCCcccC
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ------SHSTCPLCR 152 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~------~~~~CP~CR 152 (309)
.|.||... ..++.++..-.|+..||..|+..=.. ....||.|+
T Consensus 1 ~C~vC~~~-~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQS-DDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSS-CTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCc-CCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 38899984 33445556667999999999876653 246688885
No 142
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=67.25 E-value=3.6 Score=26.45 Aligned_cols=27 Identities=26% Similarity=0.584 Sum_probs=18.2
Q ss_pred ceecccccccccCcc-------eeecCCCCCccc
Q 021708 108 LECAVCLSELEDGEK-------ARLLPKCNHGFH 134 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~-------~~~lp~C~H~FH 134 (309)
.+|+=|...|..++. ....++|+|.|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 358888888876553 245666888875
No 143
>PHA03054 IMV membrane protein; Provisional
Probab=66.84 E-value=10 Score=28.23 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=15.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Q 021708 21 GQIMVIAIIVLFFVVVFILFLHLYAK 46 (309)
Q Consensus 21 ~~i~~i~ii~l~~vv~~iill~~~~~ 46 (309)
+..+.+.|++++++++.++++++|.|
T Consensus 45 ~~~~~~~ii~l~~v~~~~l~~flYLK 70 (72)
T PHA03054 45 CWGWYWLIIIFFIVLILLLLIYLYLK 70 (72)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445556666666666667665
No 144
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=66.72 E-value=6.2 Score=37.76 Aligned_cols=51 Identities=27% Similarity=0.591 Sum_probs=35.0
Q ss_pred Cceecccccccc-----cCc-----------ceeecCCCCCccchhHHHHHHhc---------CCCCcccCcccccC
Q 021708 107 GLECAVCLSELE-----DGE-----------KARLLPKCNHGFHVECIDMWFQS---------HSTCPLCRNPVDVE 158 (309)
Q Consensus 107 ~~~C~ICl~~~~-----~~~-----------~~~~lp~C~H~FH~~Ci~~Wl~~---------~~~CP~CR~~i~~~ 158 (309)
..+|++|+..=. -+. .-..-| |||+--..=..-|-.. +..||.|-..+..+
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 468999987521 000 012456 9999999999999854 55699998777644
No 145
>PHA02819 hypothetical protein; Provisional
Probab=66.42 E-value=11 Score=28.07 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=15.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021708 21 GQIMVIAIIVLFFVVVFILFLHLYAKW 47 (309)
Q Consensus 21 ~~i~~i~ii~l~~vv~~iill~~~~~~ 47 (309)
+..+.+.|++++++++.++++++|.|.
T Consensus 43 ~~~~~~~ii~l~~~~~~~~~~flYLK~ 69 (71)
T PHA02819 43 SFLRYYLIIGLVTIVFVIIFIIFYLKV 69 (71)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455566666666667777764
No 146
>PRK05978 hypothetical protein; Provisional
Probab=66.24 E-value=4.5 Score=34.56 Aligned_cols=34 Identities=18% Similarity=0.489 Sum_probs=25.7
Q ss_pred ecCCCC--CccchhHHHHHHhcCCCCcccCcccccCCCCCC
Q 021708 125 LLPKCN--HGFHVECIDMWFQSHSTCPLCRNPVDVERSNNG 163 (309)
Q Consensus 125 ~lp~C~--H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~~~~ 163 (309)
.+|+|| |+|+ .+|+.+..||.|-.++......+.
T Consensus 35 rCP~CG~G~LF~-----g~Lkv~~~C~~CG~~~~~~~a~Dg 70 (148)
T PRK05978 35 RCPACGEGKLFR-----AFLKPVDHCAACGEDFTHHRADDL 70 (148)
T ss_pred cCCCCCCCcccc-----cccccCCCccccCCccccCCcccc
Confidence 455676 7886 788899999999888876654443
No 147
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.65 E-value=4.9 Score=37.27 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=39.5
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCCC
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERS 160 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~ 160 (309)
..|+|---+|...-....+-.|||+|-..-+.+.- ..+|++|...+...+-
T Consensus 112 fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 112 FICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDDV 162 (293)
T ss_pred eecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccccCe
Confidence 47999988888665554454599999998887743 5689999998877654
No 148
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=63.38 E-value=5.1 Score=27.58 Aligned_cols=39 Identities=26% Similarity=0.494 Sum_probs=27.4
Q ss_pred ecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708 110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 110 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
|.-|...+...+.+... -+..||.+| ..|-.|+..|...
T Consensus 1 C~~C~~~I~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKA--MGKFWHPEC--------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEEE--TTEEEETTT--------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEEe--CCcEEEccc--------cccCCCCCccCCC
Confidence 67788887765554333 678889887 5788888877643
No 149
>PLN02189 cellulose synthase
Probab=63.12 E-value=9.2 Score=42.10 Aligned_cols=53 Identities=21% Similarity=0.501 Sum_probs=38.4
Q ss_pred Cceecccccccc---cCcceeecCCCCCccchhHHHHHH-hcCCCCcccCcccccCC
Q 021708 107 GLECAVCLSELE---DGEKARLLPKCNHGFHVECIDMWF-QSHSTCPLCRNPVDVER 159 (309)
Q Consensus 107 ~~~C~ICl~~~~---~~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~i~~~~ 159 (309)
...|.||-+++. +++..+.+..|+--.|..|++-=- +.++.||-|+..+...+
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLK 90 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 347999999975 344445555587789999994333 34677999999998555
No 150
>PHA02849 putative transmembrane protein; Provisional
Probab=62.23 E-value=20 Score=27.25 Aligned_cols=28 Identities=29% Similarity=0.640 Sum_probs=13.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021708 21 GQIMVIAIIVLFFVVVFILFLHLYAKWFW 49 (309)
Q Consensus 21 ~~i~~i~ii~l~~vv~~iill~~~~~~~~ 49 (309)
|.+|++.++++. +++.+.+++.+.+|.+
T Consensus 15 g~v~vi~v~v~v-I~i~~flLlyLvkws~ 42 (82)
T PHA02849 15 GAVTVILVFVLV-ISFLAFMLLYLIKWSY 42 (82)
T ss_pred chHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 444554444433 3334444455556654
No 151
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.03 E-value=3.8 Score=40.37 Aligned_cols=45 Identities=24% Similarity=0.433 Sum_probs=32.2
Q ss_pred CceecccccccccCc-c-eeecCCCCCccchhHHHHHHhcCCCCcccC
Q 021708 107 GLECAVCLSELEDGE-K-ARLLPKCNHGFHVECIDMWFQSHSTCPLCR 152 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~-~-~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 152 (309)
-..|+.|.-.+.-.+ . -.... |||.|++.|...|...+..|..|-
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~~ 352 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYECC 352 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCcc
Confidence 456888877654333 2 34454 999999999999998777775553
No 152
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=60.91 E-value=6.2 Score=37.76 Aligned_cols=44 Identities=25% Similarity=0.459 Sum_probs=35.2
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhcC---CCCccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH---STCPLC 151 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~C 151 (309)
-..|++--+.-.+.....++. |||+.-.+-++..-+++ ..||+|
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred eeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 457998877777666777886 99999999999887653 459999
No 153
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=60.25 E-value=20 Score=26.92 Aligned_cols=19 Identities=42% Similarity=0.852 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021708 28 IIVLFFVVVFILFLHLYAK 46 (309)
Q Consensus 28 ii~l~~vv~~iill~~~~~ 46 (309)
++.++++++.++++++|.|
T Consensus 52 ii~ii~v~ii~~l~flYLK 70 (72)
T PF12575_consen 52 IISIIFVLIIVLLTFLYLK 70 (72)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3333344444444455554
No 154
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=59.97 E-value=11 Score=30.20 Aligned_cols=48 Identities=23% Similarity=0.505 Sum_probs=29.7
Q ss_pred CCceecccccccccCccee----ecCCC---CCccchhHHHHHHhc---------CCCCcccCc
Q 021708 106 DGLECAVCLSELEDGEKAR----LLPKC---NHGFHVECIDMWFQS---------HSTCPLCRN 153 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~----~lp~C---~H~FH~~Ci~~Wl~~---------~~~CP~CR~ 153 (309)
.+..|-.|...-.+....- ..+.| .-.|+..||..++.. .-.||.||.
T Consensus 6 ~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 6 NGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 3456777777533211110 11346 667999999999843 345999986
No 155
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=59.07 E-value=13 Score=24.74 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021708 28 IIVLFFVVVFILFLHLYAKWFW 49 (309)
Q Consensus 28 ii~l~~vv~~iill~~~~~~~~ 49 (309)
+++++++.+.++.+++|.||.-
T Consensus 14 F~lVglv~i~iva~~iYRKw~a 35 (43)
T PF08114_consen 14 FCLVGLVGIGIVALFIYRKWQA 35 (43)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666667777763
No 156
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=58.61 E-value=10 Score=26.19 Aligned_cols=43 Identities=23% Similarity=0.642 Sum_probs=19.3
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhc-----CCCCcccCcc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-----HSTCPLCRNP 154 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~~ 154 (309)
+.|+|....+.. .+|-.. |.|+-+.+ ++.||.. ...||+|.++
T Consensus 3 L~CPls~~~i~~--P~Rg~~-C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRI--PVRGKN-CKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SS--EEEETT---SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEe--CccCCc-CcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 468888888764 355554 99985433 3445522 3469999753
No 157
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.93 E-value=8.5 Score=35.65 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=29.3
Q ss_pred CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc
Q 021708 104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS 144 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~ 144 (309)
.++-+.|.+||..+.+ ....| =||+|+.+||.+++..
T Consensus 40 iK~FdcCsLtLqPc~d---Pvit~-~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRD---PVITP-DGYLFDREAILEYILA 76 (303)
T ss_pred cCCcceeeeecccccC---CccCC-CCeeeeHHHHHHHHHH
Confidence 4455679999999876 44565 7899999999999843
No 158
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=57.32 E-value=7.5 Score=37.34 Aligned_cols=48 Identities=23% Similarity=0.609 Sum_probs=37.0
Q ss_pred ceecccccccccCcc-eeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 108 LECAVCLSELEDGEK-ARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
..|+||.++....+. ..-.| |+|..|..|+..-...+..||.||.++.
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~-~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCP-CGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCccccccccccccc-ccccchhhhhhcccccCCCCCccCCccc
Confidence 579999999854443 33444 8888888898888888999999995554
No 159
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=56.57 E-value=5 Score=29.03 Aligned_cols=36 Identities=11% Similarity=0.279 Sum_probs=19.1
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHH
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF 142 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl 142 (309)
...|.+|...|..-..-.....||++|+..|.....
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 457999999997544444455699999999986654
No 160
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=56.41 E-value=32 Score=25.47 Aligned_cols=26 Identities=19% Similarity=0.528 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021708 23 IMVIAIIVLFFVVVFILFLHLYAKWF 48 (309)
Q Consensus 23 i~~i~ii~l~~vv~~iill~~~~~~~ 48 (309)
++++++.+.|++++++++++.++.++
T Consensus 7 i~i~Gm~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 7 IMIIGMGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444
No 161
>PLN02436 cellulose synthase A
Probab=56.34 E-value=14 Score=40.83 Aligned_cols=53 Identities=25% Similarity=0.560 Sum_probs=38.3
Q ss_pred Cceecccccccc---cCcceeecCCCCCccchhHHHHHH-hcCCCCcccCcccccCC
Q 021708 107 GLECAVCLSELE---DGEKARLLPKCNHGFHVECIDMWF-QSHSTCPLCRNPVDVER 159 (309)
Q Consensus 107 ~~~C~ICl~~~~---~~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~i~~~~ 159 (309)
...|.||-+++. +++..+-+..|+--.|..|++-=- ..++.||-|+..+...+
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 347999999973 455555555577779999995333 33677999999998555
No 162
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=54.87 E-value=8.1 Score=38.89 Aligned_cols=51 Identities=22% Similarity=0.515 Sum_probs=35.5
Q ss_pred CCceecccccc-cccCcceeecCCCCCccchhHHHHHHhc--------CCCCcccCcccc
Q 021708 106 DGLECAVCLSE-LEDGEKARLLPKCNHGFHVECIDMWFQS--------HSTCPLCRNPVD 156 (309)
Q Consensus 106 ~~~~C~ICl~~-~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~CR~~i~ 156 (309)
.+..|.+|+.- .-....+..+.+|+-.||..|-...... ...|=+|.....
T Consensus 167 ~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~ 226 (464)
T KOG4323|consen 167 VNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPK 226 (464)
T ss_pred ccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchh
Confidence 45679999954 3444567777778899999998776532 234888876543
No 163
>PRK02935 hypothetical protein; Provisional
Probab=53.69 E-value=80 Score=25.50 Aligned_cols=19 Identities=26% Similarity=0.621 Sum_probs=14.0
Q ss_pred hcCCCCcccCcccccCCCC
Q 021708 143 QSHSTCPLCRNPVDVERSN 161 (309)
Q Consensus 143 ~~~~~CP~CR~~i~~~~~~ 161 (309)
.+-+.|..|+.++..+...
T Consensus 84 GrvD~CM~C~~PLTLd~~l 102 (110)
T PRK02935 84 GRVDACMHCNQPLTLDRSL 102 (110)
T ss_pred cceeecCcCCCcCCcCccc
Confidence 4456799999999866543
No 164
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.12 E-value=7.6 Score=38.86 Aligned_cols=37 Identities=22% Similarity=0.604 Sum_probs=29.4
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHHHhc
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS 144 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~ 144 (309)
.....|-||.+.+.. .+..+. |+|.|+..|...++..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 345689999999875 344555 9999999999999954
No 165
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=51.29 E-value=6.3 Score=27.63 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=16.7
Q ss_pred cceeecCCCCCccchhHHHHH
Q 021708 121 EKARLLPKCNHGFHVECIDMW 141 (309)
Q Consensus 121 ~~~~~lp~C~H~FH~~Ci~~W 141 (309)
......++|+|.|+..|...|
T Consensus 38 ~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 38 CNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCeeECCCCCCeECCCCCCcC
Confidence 345566569999999999888
No 166
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.22 E-value=5.1 Score=38.03 Aligned_cols=50 Identities=26% Similarity=0.533 Sum_probs=40.0
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
.+...|-||...+...... - .|.|.|+..|...|......||.|+..+.+
T Consensus 103 ~~~~~~~~~~g~l~vpt~~--q-g~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRI--Q-GCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred CCccceeeeeeeEEecccc--c-CceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 3456799999988764433 2 399999999999999999999999876643
No 167
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=50.63 E-value=38 Score=29.41 Aligned_cols=20 Identities=10% Similarity=0.120 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021708 30 VLFFVVVFILFLHLYAKWFW 49 (309)
Q Consensus 30 ~l~~vv~~iill~~~~~~~~ 49 (309)
++++++..+++++++++.|.
T Consensus 99 ~Vl~g~s~l~i~yfvir~~R 118 (163)
T PF06679_consen 99 YVLVGLSALAILYFVIRTFR 118 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444555555556666664
No 168
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=50.50 E-value=12 Score=25.85 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=25.8
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHh
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ 143 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~ 143 (309)
..|.+|-..|.....-.....||++|+..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 468999888876443344445999999999876553
No 169
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=49.88 E-value=21 Score=25.46 Aligned_cols=44 Identities=23% Similarity=0.662 Sum_probs=32.8
Q ss_pred ceecccccccccCc-ceeecCCCC--CccchhHHHHHHhcCCCCcccCcccc
Q 021708 108 LECAVCLSELEDGE-KARLLPKCN--HGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 108 ~~C~ICl~~~~~~~-~~~~lp~C~--H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
..|-.|-.++..+. ..++ |. ..|+.+|.+..| +..||.|-..+.
T Consensus 6 pnCE~C~~dLp~~s~~A~I---CSfECTFC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI---CSFECTFCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred CCccccCCCCCCCCCcceE---EeEeCcccHHHHHHHh--cCcCcCCCCccc
Confidence 35888888887665 3443 65 469999999988 568999976654
No 170
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=49.40 E-value=14 Score=29.55 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=28.0
Q ss_pred eecccccccccCcceeecCCCCCccchhHHHHHHh
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ 143 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~ 143 (309)
.|.||-.++..|+...++.+ -..|+.|+..=..
T Consensus 4 kC~iCg~~I~~gqlFTF~~k--G~VH~~C~~~~~~ 36 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKK--GPVHYECFREKAS 36 (101)
T ss_pred EEEecCCeeeecceEEEecC--CcEeHHHHHHHHh
Confidence 59999999999998888753 7899999988654
No 171
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=49.39 E-value=5.6 Score=39.15 Aligned_cols=50 Identities=26% Similarity=0.611 Sum_probs=0.0
Q ss_pred Cceecccccccc-------------cC---cceeecCCCCCccchhHHHHHHhc---------CCCCcccCccccc
Q 021708 107 GLECAVCLSELE-------------DG---EKARLLPKCNHGFHVECIDMWFQS---------HSTCPLCRNPVDV 157 (309)
Q Consensus 107 ~~~C~ICl~~~~-------------~~---~~~~~lp~C~H~FH~~Ci~~Wl~~---------~~~CP~CR~~i~~ 157 (309)
..+|++|+..=. .+ -.....| |||+--.+...-|-.. +..||.|-..|..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 568999986421 00 0123566 9999999999999843 4569999888764
No 172
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=48.96 E-value=9.7 Score=28.04 Aligned_cols=12 Identities=33% Similarity=1.259 Sum_probs=8.8
Q ss_pred ccchhHHHHHHh
Q 021708 132 GFHVECIDMWFQ 143 (309)
Q Consensus 132 ~FH~~Ci~~Wl~ 143 (309)
.||..||.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999994
No 173
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.91 E-value=12 Score=35.37 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=27.2
Q ss_pred CceecccccccccCcceeecCC-CCCccchhHHHHHHhc
Q 021708 107 GLECAVCLSELEDGEKARLLPK-CNHGFHVECIDMWFQS 144 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~-C~H~FH~~Ci~~Wl~~ 144 (309)
-+.|.+|.|.+++. ..+.+|. =.|.||..|-.+-++.
T Consensus 268 pLcCTLC~ERLEDT-HFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 268 PLCCTLCHERLEDT-HFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred ceeehhhhhhhccC-ceeecCCCcccceecccCHHHHHh
Confidence 36899999998863 3333332 2499999999999865
No 174
>PLN02400 cellulose synthase
Probab=48.78 E-value=18 Score=40.08 Aligned_cols=54 Identities=17% Similarity=0.449 Sum_probs=37.8
Q ss_pred Cceecccccccc---cCcceeecCCCCCccchhHHHHHH-hcCCCCcccCcccccCCC
Q 021708 107 GLECAVCLSELE---DGEKARLLPKCNHGFHVECIDMWF-QSHSTCPLCRNPVDVERS 160 (309)
Q Consensus 107 ~~~C~ICl~~~~---~~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~i~~~~~ 160 (309)
...|.||-+++. +++....+..|+--.|..|++-=- +.++.||-|+..+.-.++
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~Kg 93 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHKG 93 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccccC
Confidence 347999999975 344444444577779999984322 346789999999986553
No 175
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=48.77 E-value=15 Score=29.10 Aligned_cols=34 Identities=24% Similarity=0.470 Sum_probs=28.4
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHh
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ 143 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~ 143 (309)
..|.||-..+..|+.....+ .-..|++|+..=..
T Consensus 7 wkC~VCg~~iieGqkFTF~~--kGsVH~eCl~~s~~ 40 (103)
T COG4847 7 WKCYVCGGTIIEGQKFTFTK--KGSVHYECLAESKR 40 (103)
T ss_pred eeEeeeCCEeeeccEEEEee--CCcchHHHHHHHHh
Confidence 46999999999999888774 66799999987654
No 176
>PHA02692 hypothetical protein; Provisional
Probab=48.40 E-value=30 Score=25.75 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 021708 31 LFFVVVFILFLHLYAK 46 (309)
Q Consensus 31 l~~vv~~iill~~~~~ 46 (309)
++++++.++++++|.|
T Consensus 53 ~~~~~~~vll~flYLK 68 (70)
T PHA02692 53 LIAAAIGVLLCFHYLK 68 (70)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4555555566666665
No 177
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=48.07 E-value=20 Score=39.72 Aligned_cols=54 Identities=20% Similarity=0.496 Sum_probs=38.1
Q ss_pred Cceecccccccc---cCcceeecCCCCCccchhHHHHHH-hcCCCCcccCcccccCCC
Q 021708 107 GLECAVCLSELE---DGEKARLLPKCNHGFHVECIDMWF-QSHSTCPLCRNPVDVERS 160 (309)
Q Consensus 107 ~~~C~ICl~~~~---~~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~i~~~~~ 160 (309)
...|.||-+++. +++..+-+..|+--.|..|++-=- +.++.||-|+..+.-.++
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kg 74 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKG 74 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcC
Confidence 347999999975 344444555577779999994322 446789999999985553
No 178
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=47.41 E-value=16 Score=35.23 Aligned_cols=45 Identities=24% Similarity=0.518 Sum_probs=31.9
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRN 153 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 153 (309)
..|-.|.++....... .+..|+|.||.+|=.---+.-..||.|..
T Consensus 331 ~~Cf~C~~~~~~~~~y-~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRY-RCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred cceeeeccccCCCCcE-EchhccceeeccchHHHHhhhhcCCCcCC
Confidence 4599998887765554 45569999999994333244567999963
No 179
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=46.67 E-value=37 Score=27.00 Aligned_cols=21 Identities=29% Similarity=0.683 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021708 28 IIVLFFVVVFILFLHLYAKWF 48 (309)
Q Consensus 28 ii~l~~vv~~iill~~~~~~~ 48 (309)
++..+++++|+|+|++-.++|
T Consensus 18 ~FA~L~i~~FiILLIi~~~IW 38 (121)
T PF10669_consen 18 FFAFLFIVVFIILLIITKSIW 38 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333444555666666655554
No 180
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=46.02 E-value=43 Score=28.64 Aligned_cols=6 Identities=0% Similarity=-0.141 Sum_probs=2.5
Q ss_pred HHHHHH
Q 021708 43 LYAKWF 48 (309)
Q Consensus 43 ~~~~~~ 48 (309)
+++.|+
T Consensus 47 vli~lc 52 (189)
T PF05568_consen 47 VLIYLC 52 (189)
T ss_pred HHHHHH
Confidence 334444
No 181
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=42.92 E-value=18 Score=25.14 Aligned_cols=27 Identities=26% Similarity=0.644 Sum_probs=15.8
Q ss_pred eecCCCCCccchhHHHHHHhcCCCCccc
Q 021708 124 RLLPKCNHGFHVECIDMWFQSHSTCPLC 151 (309)
Q Consensus 124 ~~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 151 (309)
-..++|||.|...= ..-......||.|
T Consensus 29 W~C~~Cgh~w~~~v-~~R~~~~~~CP~C 55 (55)
T PF14311_consen 29 WKCPKCGHEWKASV-NDRTRRGKGCPYC 55 (55)
T ss_pred EECCCCCCeeEccH-hhhccCCCCCCCC
Confidence 45556777666432 2222456679988
No 183
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=42.84 E-value=17 Score=33.02 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=15.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Q 021708 21 GQIMVIAIIVLFFVVVFILFLHLYAK 46 (309)
Q Consensus 21 ~~i~~i~ii~l~~vv~~iill~~~~~ 46 (309)
...++++|+.+++.|+++||+..+++
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHHH
Confidence 44445555566666666666555555
No 184
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=42.84 E-value=39 Score=28.91 Aligned_cols=27 Identities=15% Similarity=0.375 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021708 23 IMVIAIIVLFFVVVFILFLHLYAKWFW 49 (309)
Q Consensus 23 i~~i~ii~l~~vv~~iill~~~~~~~~ 49 (309)
++.|+|.+.++++++++++++|.....
T Consensus 31 m~tILiaIvVliiiiivli~lcssRKk 57 (189)
T PF05568_consen 31 MYTILIAIVVLIIIIIVLIYLCSSRKK 57 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 334444444445555556666666653
No 185
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=42.56 E-value=20 Score=21.70 Aligned_cols=29 Identities=21% Similarity=0.548 Sum_probs=11.0
Q ss_pred eecccccccccCcceeecCCCCCccchhHH
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVECI 138 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci 138 (309)
.|.+|...... ...-....|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 48888888765 345455569999999985
No 186
>PF14979 TMEM52: Transmembrane 52
Probab=42.31 E-value=54 Score=27.99 Aligned_cols=12 Identities=25% Similarity=0.263 Sum_probs=5.1
Q ss_pred chhHHHHHHHHH
Q 021708 21 GQIMVIAIIVLF 32 (309)
Q Consensus 21 ~~i~~i~ii~l~ 32 (309)
++||++++++++
T Consensus 20 WyIwLill~~~l 31 (154)
T PF14979_consen 20 WYIWLILLIGFL 31 (154)
T ss_pred hHHHHHHHHHHH
Confidence 444444443333
No 187
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=41.57 E-value=6.1 Score=37.42 Aligned_cols=37 Identities=27% Similarity=0.636 Sum_probs=26.9
Q ss_pred eecccccccccCcceeecCCCCCccchhHHHHHHhcCC
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHS 146 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~ 146 (309)
+|.+|+++|..+......- |.-+||..|+-.|+....
T Consensus 216 vC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 216 VCDICFEELEKGARGDRED-SLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred ecHHHHHHHhcccccchhh-cccccccccccccccccc
Confidence 7999999997644444443 666899999999986533
No 188
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=41.55 E-value=13 Score=38.39 Aligned_cols=37 Identities=24% Similarity=0.452 Sum_probs=24.2
Q ss_pred CCCceeccccccccc----Ccc------eeecCCCCCccchhHHHHHH
Q 021708 105 KDGLECAVCLSELED----GEK------ARLLPKCNHGFHVECIDMWF 142 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~----~~~------~~~lp~C~H~FH~~Ci~~Wl 142 (309)
+....|+||.+.|.. .+. .+.+- =|-+||..|+..--
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le-~G~ifH~~Cl~e~~ 557 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLE-FGRIFHSKCLSEKR 557 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeec-cCceeeccccchHH
Confidence 345679999999863 111 12231 47899999998754
No 189
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.08 E-value=8.7 Score=38.44 Aligned_cols=36 Identities=22% Similarity=0.493 Sum_probs=27.0
Q ss_pred ceecccccccccCcce-----eecCCCCCccchhHHHHHHhc
Q 021708 108 LECAVCLSELEDGEKA-----RLLPKCNHGFHVECIDMWFQS 144 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~-----~~lp~C~H~FH~~Ci~~Wl~~ 144 (309)
..|+.|...+..+... ... .|+|.||+.|+..|-..
T Consensus 227 k~CP~c~~~iek~~gc~~~~~~~~-~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 227 KECPKCKVPIEKDGGCNHMTCKSA-SCKHEFCWVCLASLSDH 267 (444)
T ss_pred ccCCCcccchhccCCccccccccC-CcCCeeceeeecccccc
Confidence 3599999998876522 222 39999999999999855
No 190
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=40.00 E-value=29 Score=29.01 Aligned_cols=17 Identities=29% Similarity=0.170 Sum_probs=6.7
Q ss_pred ccchhHHHHHHHHHHHH
Q 021708 19 ITGQIMVIAIIVLFFVV 35 (309)
Q Consensus 19 i~~~i~~i~ii~l~~vv 35 (309)
....++.+-+|++++++
T Consensus 96 ~~t~Yia~~~il~il~~ 112 (139)
T PHA03099 96 TTTSYIPSPGIVLVLVG 112 (139)
T ss_pred chhhhhhhhHHHHHHHH
Confidence 33444443333333333
No 191
>PF15069 FAM163: FAM163 family
Probab=39.65 E-value=18 Score=30.63 Aligned_cols=14 Identities=43% Similarity=0.726 Sum_probs=7.8
Q ss_pred CCccccchhHHHHH
Q 021708 15 GSLEITGQIMVIAI 28 (309)
Q Consensus 15 ~~~~i~~~i~~i~i 28 (309)
+++-|.|.|+..+|
T Consensus 4 GTvVItGgILAtVI 17 (143)
T PF15069_consen 4 GTVVITGGILATVI 17 (143)
T ss_pred eeEEEechHHHHHH
Confidence 45566666655444
No 192
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=39.44 E-value=30 Score=38.32 Aligned_cols=53 Identities=21% Similarity=0.456 Sum_probs=37.9
Q ss_pred Cceecccccccc---cCcceeecCCCCCccchhHHHHHH-hcCCCCcccCcccccCC
Q 021708 107 GLECAVCLSELE---DGEKARLLPKCNHGFHVECIDMWF-QSHSTCPLCRNPVDVER 159 (309)
Q Consensus 107 ~~~C~ICl~~~~---~~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~i~~~~ 159 (309)
...|.||-+++. +++....+..|+--.|..|++-=. +.++.||-|+..+...+
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~ 71 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHK 71 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc
Confidence 457999999975 344444555577779999995333 34677999999998554
No 193
>PF15179 Myc_target_1: Myc target protein 1
Probab=38.98 E-value=60 Score=28.78 Aligned_cols=12 Identities=17% Similarity=0.570 Sum_probs=7.4
Q ss_pred CCCCccccCCCC
Q 021708 192 FPTNVLFWGNEN 203 (309)
Q Consensus 192 ~ptn~~~~g~~~ 203 (309)
.+.+.++||+..
T Consensus 160 ~~rp~f~w~nns 171 (197)
T PF15179_consen 160 LSRPDFHWSNNS 171 (197)
T ss_pred CCCCccccccCc
Confidence 455667777654
No 194
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=36.70 E-value=1e+02 Score=22.12 Aligned_cols=8 Identities=13% Similarity=0.393 Sum_probs=4.0
Q ss_pred HHHHHHHH
Q 021708 42 HLYAKWFW 49 (309)
Q Consensus 42 ~~~~~~~~ 49 (309)
.+++|+..
T Consensus 24 tl~IRri~ 31 (58)
T PF13314_consen 24 TLFIRRIL 31 (58)
T ss_pred HHHHHHHH
Confidence 34555554
No 195
>PHA02650 hypothetical protein; Provisional
Probab=36.50 E-value=82 Score=24.05 Aligned_cols=28 Identities=25% Similarity=0.371 Sum_probs=13.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHH
Q 021708 18 EITGQIMVIAIIVLFFVVVFILFLHLYA 45 (309)
Q Consensus 18 ~i~~~i~~i~ii~l~~vv~~iill~~~~ 45 (309)
...+.+++++++++.+++++.++..-.+
T Consensus 46 ~~~~~~~ii~i~~v~i~~l~~flYLK~~ 73 (81)
T PHA02650 46 WFNGQNFIFLIFSLIIVALFSFFVFKGY 73 (81)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555544444333
No 196
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=36.12 E-value=12 Score=36.90 Aligned_cols=27 Identities=41% Similarity=0.800 Sum_probs=0.0
Q ss_pred eecCCCCCccchhHHHHHHh------cCCCCcccCcc
Q 021708 124 RLLPKCNHGFHVECIDMWFQ------SHSTCPLCRNP 154 (309)
Q Consensus 124 ~~lp~C~H~FH~~Ci~~Wl~------~~~~CP~CR~~ 154 (309)
..+ +|||++..+ .|-. ...+||+||..
T Consensus 305 VYl-~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 305 VYL-NCGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -------------------------------------
T ss_pred eec-cccceeeec---ccccccccccccccCCCcccc
Confidence 455 499986643 5652 24579999863
No 197
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=35.86 E-value=16 Score=38.50 Aligned_cols=52 Identities=19% Similarity=0.389 Sum_probs=33.3
Q ss_pred CceecccccccccCcc----eeecC--CCCCccchhHHHHHH----------hcCCCCcccCcccccC
Q 021708 107 GLECAVCLSELEDGEK----ARLLP--KCNHGFHVECIDMWF----------QSHSTCPLCRNPVDVE 158 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~----~~~lp--~C~H~FH~~Ci~~Wl----------~~~~~CP~CR~~i~~~ 158 (309)
...|-||.|+=...+. +..+. .|+-.||..|....= .+-+.|-+|+..+-..
T Consensus 117 nKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsKl 184 (900)
T KOG0956|consen 117 NKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSKL 184 (900)
T ss_pred cceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHHHh
Confidence 4579999998443331 11111 277889999987641 2245699999877543
No 198
>PF15069 FAM163: FAM163 family
Probab=35.86 E-value=47 Score=28.19 Aligned_cols=26 Identities=12% Similarity=0.286 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021708 23 IMVIAIIVLFFVVVFILFLHLYAKWF 48 (309)
Q Consensus 23 i~~i~ii~l~~vv~~iill~~~~~~~ 48 (309)
+++...|+++++++.+|.+..|.++.
T Consensus 6 vVItGgILAtVILLcIIaVLCYCRLQ 31 (143)
T PF15069_consen 6 VVITGGILATVILLCIIAVLCYCRLQ 31 (143)
T ss_pred EEEechHHHHHHHHHHHHHHHHHhhH
Confidence 34445555655555555555555533
No 199
>PLN02195 cellulose synthase A
Probab=35.46 E-value=47 Score=36.62 Aligned_cols=51 Identities=24% Similarity=0.487 Sum_probs=36.5
Q ss_pred Cceeccccccccc---CcceeecCCCCCccchhHHHHHH-hcCCCCcccCccccc
Q 021708 107 GLECAVCLSELED---GEKARLLPKCNHGFHVECIDMWF-QSHSTCPLCRNPVDV 157 (309)
Q Consensus 107 ~~~C~ICl~~~~~---~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~i~~ 157 (309)
...|.||-+++.. ++...-+..|+--.|+.|++-=- +.++.||-|+..+.+
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCcccc
Confidence 3579999998753 44445555588889999994322 336779999999883
No 200
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=35.07 E-value=72 Score=31.63 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=22.9
Q ss_pred CCcccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021708 9 NGFQNTGSLEITGQIMVIAIIVLFFVVVFILFLHLYAKWFWWRIEQ 54 (309)
Q Consensus 9 ~~~~~~~~~~i~~~i~~i~ii~l~~vv~~iill~~~~~~~~~R~~~ 54 (309)
++|...+. +....+++++.+.+.+.++.++++.+|..++++++++
T Consensus 6 ~~F~p~~~-~Y~qsL~~la~v~~~~l~l~Ll~ll~yl~~~CC~r~~ 50 (406)
T PF04906_consen 6 STFNPQDE-EYQQSLLILASVAAACLALSLLFLLIYLICRCCCRRP 50 (406)
T ss_pred CCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 44544433 4444555555544444445555555665555555443
No 201
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=33.86 E-value=30 Score=37.26 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=25.6
Q ss_pred ceecccccccccCcc---eee--cCCCCCccchhHHHHHH
Q 021708 108 LECAVCLSELEDGEK---ARL--LPKCNHGFHVECIDMWF 142 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~---~~~--lp~C~H~FH~~Ci~~Wl 142 (309)
..|..|...|..-.+ .|. +.+||++||..|-..+.
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs 500 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRA 500 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcc
Confidence 469999999964211 222 55699999999998765
No 202
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.59 E-value=35 Score=25.69 Aligned_cols=45 Identities=22% Similarity=0.575 Sum_probs=29.5
Q ss_pred eecccccccccCcc-eeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 109 ECAVCLSELEDGEK-ARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 109 ~C~ICl~~~~~~~~-~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
.|--|-.++-.+.. .++.. =.|.|+.+|...-|. ..||.|-..+.
T Consensus 7 nCECCDrDLpp~s~dA~ICt-fEcTFCadCae~~l~--g~CPnCGGelv 52 (84)
T COG3813 7 NCECCDRDLPPDSTDARICT-FECTFCADCAENRLH--GLCPNCGGELV 52 (84)
T ss_pred CCcccCCCCCCCCCceeEEE-EeeehhHhHHHHhhc--CcCCCCCchhh
Confidence 46667666654332 23321 338899999998664 68999976665
No 203
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=33.37 E-value=83 Score=22.76 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021708 26 IAIIVLFFVVVFILFLHLYAKWF 48 (309)
Q Consensus 26 i~ii~l~~vv~~iill~~~~~~~ 48 (309)
+..+-.++++.+.++++.++.+.
T Consensus 7 ~~~a~a~~t~~~~l~fiavi~~a 29 (60)
T COG4736 7 RGFADAWGTIAFTLFFIAVIYFA 29 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 204
>PRK14762 membrane protein; Provisional
Probab=33.20 E-value=74 Score=18.93 Aligned_cols=10 Identities=30% Similarity=0.298 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 021708 24 MVIAIIVLFF 33 (309)
Q Consensus 24 ~~i~ii~l~~ 33 (309)
|+++|++++.
T Consensus 6 w~i~iiflig 15 (27)
T PRK14762 6 WAVLIIFLIG 15 (27)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 205
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=32.81 E-value=59 Score=23.31 Aligned_cols=35 Identities=11% Similarity=0.280 Sum_probs=24.7
Q ss_pred CCceeccccccccc--CcceeecCCCCCccchhHHHH
Q 021708 106 DGLECAVCLSELED--GEKARLLPKCNHGFHVECIDM 140 (309)
Q Consensus 106 ~~~~C~ICl~~~~~--~~~~~~lp~C~H~FH~~Ci~~ 140 (309)
....|+.|-..... ......++.||+.+|.+-.-.
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~naA 63 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNAA 63 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEECcHHHHH
Confidence 34569999888776 555667777888888775433
No 206
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=32.64 E-value=96 Score=19.44 Aligned_cols=17 Identities=24% Similarity=0.592 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021708 30 VLFFVVVFILFLHLYAK 46 (309)
Q Consensus 30 ~l~~vv~~iill~~~~~ 46 (309)
.+|+.+-.++++++|++
T Consensus 12 aLfi~iPt~FLiilyvq 28 (31)
T PF05151_consen 12 ALFILIPTAFLIILYVQ 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhheEee
Confidence 44444555555556654
No 207
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=32.32 E-value=40 Score=36.25 Aligned_cols=6 Identities=33% Similarity=0.390 Sum_probs=2.5
Q ss_pred ceEeec
Q 021708 245 MLVIDI 250 (309)
Q Consensus 245 ~~vi~i 250 (309)
|+.||+
T Consensus 647 HSyIDL 652 (807)
T PF10577_consen 647 HSYIDL 652 (807)
T ss_pred hhhhhh
Confidence 334444
No 208
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=32.19 E-value=62 Score=30.85 Aligned_cols=11 Identities=9% Similarity=0.129 Sum_probs=4.5
Q ss_pred HHHHHHHHHhh
Q 021708 42 HLYAKWFWWRI 52 (309)
Q Consensus 42 ~~~~~~~~~R~ 52 (309)
++++.++.||+
T Consensus 271 IMvIIYLILRY 281 (299)
T PF02009_consen 271 IMVIIYLILRY 281 (299)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 209
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=31.93 E-value=32 Score=27.27 Aligned_cols=12 Identities=25% Similarity=0.174 Sum_probs=5.3
Q ss_pred chhHHHHHHHHH
Q 021708 21 GQIMVIAIIVLF 32 (309)
Q Consensus 21 ~~i~~i~ii~l~ 32 (309)
...+.++++.++
T Consensus 58 ~~~~~iili~ll 69 (101)
T PF06024_consen 58 QNNGNIILISLL 69 (101)
T ss_pred cccccchHHHHH
Confidence 344444444443
No 210
>PHA02975 hypothetical protein; Provisional
Probab=31.88 E-value=91 Score=23.15 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=17.1
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHH
Q 021708 17 LEITGQIMVIAIIVLFFVVVFILFLHL 43 (309)
Q Consensus 17 ~~i~~~i~~i~ii~l~~vv~~iill~~ 43 (309)
-...+.+++++++++.+++++.++..-
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~~flYLK 66 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVFTFLYLK 66 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666776667666666666665443
No 211
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=31.44 E-value=1.1e+02 Score=20.03 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 021708 30 VLFFVVVFILFLHLYAKWFWWR 51 (309)
Q Consensus 30 ~l~~vv~~iill~~~~~~~~~R 51 (309)
++..|++.++++++++-+|-++
T Consensus 8 IIv~V~vg~~iiii~~~~YaCc 29 (38)
T PF02439_consen 8 IIVAVVVGMAIIIICMFYYACC 29 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 212
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=31.33 E-value=1e+02 Score=24.50 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=17.3
Q ss_pred ccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021708 12 QNTGSLEITGQIMVIAIIVLFFVVVFILFLHLYAKWF 48 (309)
Q Consensus 12 ~~~~~~~i~~~i~~i~ii~l~~vv~~iill~~~~~~~ 48 (309)
...+.++ .+.|++|.++..+.++.+++-|++|++-+
T Consensus 10 KPsGsL~-PWeIfLItLasVvvavGl~aGLfFcvR~~ 45 (106)
T PF14654_consen 10 KPSGSLK-PWEIFLITLASVVVAVGLFAGLFFCVRNS 45 (106)
T ss_pred ccCCCcc-chHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3444444 44555555544444444444455555443
No 213
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=31.10 E-value=42 Score=26.51 Aligned_cols=13 Identities=8% Similarity=-0.312 Sum_probs=5.3
Q ss_pred cchhHHHHHHHHH
Q 021708 20 TGQIMVIAIIVLF 32 (309)
Q Consensus 20 ~~~i~~i~ii~l~ 32 (309)
..+|-+++....+
T Consensus 39 ~ayWpyLA~GGG~ 51 (98)
T PF07204_consen 39 VAYWPYLAAGGGL 51 (98)
T ss_pred HhhhHHhhccchh
Confidence 3344444444333
No 214
>PTZ00370 STEVOR; Provisional
Probab=30.23 E-value=60 Score=30.78 Aligned_cols=17 Identities=12% Similarity=0.538 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021708 34 VVVFILFLHLYAKWFWW 50 (309)
Q Consensus 34 vv~~iill~~~~~~~~~ 50 (309)
+++++++.++++..|.|
T Consensus 261 alvllil~vvliilYiw 277 (296)
T PTZ00370 261 ALVLLILAVVLIILYIW 277 (296)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444444
No 215
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=30.16 E-value=1.1e+02 Score=22.55 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021708 25 VIAIIVLFFVVVFILFLHLYAKWF 48 (309)
Q Consensus 25 ~i~ii~l~~vv~~iill~~~~~~~ 48 (309)
.+.++...+|++++++|++++..+
T Consensus 6 ~i~i~Gm~iVF~~L~lL~~~i~l~ 29 (79)
T PF04277_consen 6 QIMIIGMGIVFLVLILLILVISLM 29 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444
No 216
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=30.07 E-value=25 Score=37.17 Aligned_cols=35 Identities=29% Similarity=0.695 Sum_probs=28.7
Q ss_pred ceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 122 KARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 122 ~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
.+..+|.|..+||.+=.+.-..++..||.||....
T Consensus 1043 ~it~Cp~C~~~F~~eDFEl~vLqKGHCPFCrTS~d 1077 (1081)
T KOG1538|consen 1043 SITMCPSCFQMFHSEDFELLVLQKGHCPFCRTSKD 1077 (1081)
T ss_pred hhhhCchHHhhhccchhhHHHHhcCCCCccccccc
Confidence 35567778899999888888888899999998765
No 217
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=30.05 E-value=74 Score=20.47 Aligned_cols=18 Identities=28% Similarity=0.602 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021708 29 IVLFFVVVFILFLHLYAK 46 (309)
Q Consensus 29 i~l~~vv~~iill~~~~~ 46 (309)
.++|+.+-.++++++|++
T Consensus 11 t~Lfi~iPt~FLlilYvq 28 (35)
T PRK04989 11 SLLFVLVPTVFLIILYIQ 28 (35)
T ss_pred HHHHHHHHHHHHHHHhee
Confidence 344445555555556554
No 218
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=29.96 E-value=87 Score=23.18 Aligned_cols=10 Identities=30% Similarity=0.405 Sum_probs=4.6
Q ss_pred cCCCHHHHhc
Q 021708 84 AGLDPAILRK 93 (309)
Q Consensus 84 ~g~~~~~~~~ 93 (309)
..+.++.+.+
T Consensus 51 d~L~~~Hl~S 60 (68)
T PF05961_consen 51 DKLKPDHLSS 60 (68)
T ss_pred hccCHHHHHH
Confidence 3445554444
No 219
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=29.71 E-value=30 Score=29.10 Aligned_cols=24 Identities=21% Similarity=0.534 Sum_probs=17.7
Q ss_pred eecCCCCCccchhHHHHHHhcCCCCcccCccc
Q 021708 124 RLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV 155 (309)
Q Consensus 124 ~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i 155 (309)
..+++|||+||.. +..||.|....
T Consensus 30 ~kC~~CG~v~~PP--------r~~Cp~C~~~~ 53 (140)
T COG1545 30 TKCKKCGRVYFPP--------RAYCPKCGSET 53 (140)
T ss_pred EEcCCCCeEEcCC--------cccCCCCCCCC
Confidence 3556799999843 46799998774
No 220
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.46 E-value=24 Score=30.38 Aligned_cols=46 Identities=20% Similarity=0.421 Sum_probs=33.1
Q ss_pred cccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCC
Q 021708 111 AVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER 159 (309)
Q Consensus 111 ~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 159 (309)
.||+.--...+....-|.=.+-||..|-.+-+. .||.|..+|....
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~---~Cp~C~~~IrG~y 53 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTIT---SCPNCSTPIRGDY 53 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHHH---HCcCCCCCCCCce
Confidence 477776655555555544567899999888765 6999999887543
No 221
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=29.18 E-value=48 Score=27.92 Aligned_cols=15 Identities=27% Similarity=0.716 Sum_probs=11.4
Q ss_pred CCCCcccCcccccCC
Q 021708 145 HSTCPLCRNPVDVER 159 (309)
Q Consensus 145 ~~~CP~CR~~i~~~~ 159 (309)
...||.|...+....
T Consensus 123 ~f~Cp~Cg~~l~~~d 137 (147)
T smart00531 123 TFTCPRCGEELEEDD 137 (147)
T ss_pred cEECCCCCCEEEEcC
Confidence 367999998887543
No 222
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=29.06 E-value=48 Score=31.90 Aligned_cols=44 Identities=11% Similarity=-0.085 Sum_probs=32.5
Q ss_pred CceecccccccccCcceeecCCCCC-ccchhHHHHHHhcCCCCcccCcccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNH-GFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H-~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
..+|..|-+.+.. ..+.+ |+| +|+.+|.. +....+||+|.....
T Consensus 343 ~~~~~~~~~~~~s---t~~~~-~~~n~~~~~~a~--~s~~~~~~~c~~~~~ 387 (394)
T KOG2113|consen 343 SLKGTSAGFGLLS---TIWSG-GNMNLSPGSLAS--ASASPTSSTCDHNDH 387 (394)
T ss_pred hcccccccCceee---eEeec-CCcccChhhhhh--cccCCccccccccce
Confidence 3578888877553 44555 998 59999988 566788999976554
No 223
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=28.84 E-value=7.7 Score=36.45 Aligned_cols=45 Identities=24% Similarity=0.229 Sum_probs=19.7
Q ss_pred ceecccccccccCcceeecC--CCCCccchhHHHHHHhcCCCCcccCc
Q 021708 108 LECAVCLSELEDGEKARLLP--KCNHGFHVECIDMWFQSHSTCPLCRN 153 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 153 (309)
..|+||-..-.... ++.-. .-.|.+|.-|-..|-.....||.|-.
T Consensus 173 g~CPvCGs~P~~s~-l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 173 GYCPVCGSPPVLSV-LRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp SS-TTT---EEEEE-EE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred CcCCCCCCcCceEE-EecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 47999987632211 11110 02356788888899888889999953
No 224
>PF15339 Afaf: Acrosome formation-associated factor
Probab=28.65 E-value=1.2e+02 Score=26.65 Aligned_cols=16 Identities=19% Similarity=0.571 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 021708 31 LFFVVVFILFLHLYAK 46 (309)
Q Consensus 31 l~~vv~~iill~~~~~ 46 (309)
|..+++|+++|.++..
T Consensus 138 LmTl~lfv~Ll~~c~a 153 (200)
T PF15339_consen 138 LMTLFLFVILLAFCSA 153 (200)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 225
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=28.47 E-value=21 Score=24.68 Aligned_cols=13 Identities=54% Similarity=1.270 Sum_probs=6.7
Q ss_pred CCCcccCcccccC
Q 021708 146 STCPLCRNPVDVE 158 (309)
Q Consensus 146 ~~CP~CR~~i~~~ 158 (309)
..||+|.+++...
T Consensus 21 ~~CPlC~r~l~~e 33 (54)
T PF04423_consen 21 GCCPLCGRPLDEE 33 (54)
T ss_dssp EE-TTT--EE-HH
T ss_pred CcCCCCCCCCCHH
Confidence 3799999988753
No 226
>PRK04023 DNA polymerase II large subunit; Validated
Probab=28.36 E-value=32 Score=37.91 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=33.0
Q ss_pred CceecccccccccCcceeecCCCC-----CccchhHHHHHHhcCCCCcccCcccccC
Q 021708 107 GLECAVCLSELEDGEKARLLPKCN-----HGFHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
...|+=|-... ....+|+|| +.||..| .+......||.|...+...
T Consensus 626 ~RfCpsCG~~t----~~frCP~CG~~Te~i~fCP~C--G~~~~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 626 RRKCPSCGKET----FYRRCPFCGTHTEPVYRCPRC--GIEVEEDECEKCGREPTPY 676 (1121)
T ss_pred CccCCCCCCcC----CcccCCCCCCCCCcceeCccc--cCcCCCCcCCCCCCCCCcc
Confidence 45799998874 245788898 3599999 4445557799998877643
No 227
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.10 E-value=26 Score=27.53 Aligned_cols=13 Identities=31% Similarity=1.147 Sum_probs=11.2
Q ss_pred ccchhHHHHHHhc
Q 021708 132 GFHVECIDMWFQS 144 (309)
Q Consensus 132 ~FH~~Ci~~Wl~~ 144 (309)
.||..|+..|+..
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999953
No 228
>PHA03156 hypothetical protein; Provisional
Probab=27.93 E-value=1.9e+02 Score=22.62 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=16.5
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021708 16 SLEITGQIMVIAIIVLFFVVVFILFLHLYAKWF 48 (309)
Q Consensus 16 ~~~i~~~i~~i~ii~l~~vv~~iill~~~~~~~ 48 (309)
++.....||.++-++++++..++.+.+++++.|
T Consensus 52 sl~SFSSIWallN~~i~~~A~~ifL~y~CF~kF 84 (90)
T PHA03156 52 SIKTFSSIWAILNGIIFFCASLFFLRHLCFVKF 84 (90)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566555555554444444544444443
No 229
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=26.91 E-value=21 Score=21.66 Aligned_cols=14 Identities=43% Similarity=0.655 Sum_probs=8.9
Q ss_pred hhhhHhHHhhccCC
Q 021708 274 TRLRSLKRLLSREK 287 (309)
Q Consensus 274 ~r~~s~~rl~~~~~ 287 (309)
+|-+||.|+|..-|
T Consensus 3 aRK~SLqRFLeKRK 16 (27)
T PF09425_consen 3 ARKASLQRFLEKRK 16 (27)
T ss_dssp ---HHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHH
Confidence 69999999998644
No 230
>PHA03163 hypothetical protein; Provisional
Probab=26.87 E-value=1.9e+02 Score=22.56 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=15.9
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021708 16 SLEITGQIMVIAIIVLFFVVVFILFLHLYAKWF 48 (309)
Q Consensus 16 ~~~i~~~i~~i~ii~l~~vv~~iill~~~~~~~ 48 (309)
++.....||.++-++++++..++.+.++++..|
T Consensus 53 sL~SFSSIWaliNv~Ivl~A~~iyL~y~CF~kF 85 (92)
T PHA03163 53 QLLSFSSIWAILNVLIMLIACIIYCIYMCFNKF 85 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566555555544444444444444433
No 231
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=26.46 E-value=1.1e+02 Score=26.12 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=15.5
Q ss_pred CCceeecc-CCCCCCceecccccccc
Q 021708 94 IPVVAFNQ-QDFKDGLECAVCLSELE 118 (309)
Q Consensus 94 lp~~~~~~-~~~~~~~~C~ICl~~~~ 118 (309)
.-.+.|+. ++...+...++|+-+-.
T Consensus 83 vgvvRYnAF~dmGg~LSFslAlLD~~ 108 (151)
T PF14584_consen 83 VGVVRYNAFEDMGGDLSFSLALLDDN 108 (151)
T ss_pred EEEEEccCcccccccceeeeEEEeCC
Confidence 33455554 45556778888887743
No 232
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=26.33 E-value=1.3e+02 Score=22.59 Aligned_cols=22 Identities=23% Similarity=0.564 Sum_probs=11.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHH
Q 021708 19 ITGQIMVIAIIVLFFVVVFILF 40 (309)
Q Consensus 19 i~~~i~~i~ii~l~~vv~~iil 40 (309)
....+++++++++.++++++++
T Consensus 46 ~~~~~~ii~ii~v~ii~~l~fl 67 (72)
T PF12575_consen 46 FNWIILIISIIFVLIIVLLTFL 67 (72)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555444
No 233
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=26.08 E-value=1e+02 Score=19.58 Aligned_cols=17 Identities=35% Similarity=0.714 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021708 30 VLFFVVVFILFLHLYAK 46 (309)
Q Consensus 30 ~l~~vv~~iill~~~~~ 46 (309)
++|+.+-.++++++|++
T Consensus 12 ~Lfi~iPt~FLiilYvq 28 (33)
T TIGR03038 12 LLFILVPTVFLLILYIQ 28 (33)
T ss_pred HHHHHHHHHHHHHHhee
Confidence 44444445555555554
No 234
>PHA02657 hypothetical protein; Provisional
Probab=25.91 E-value=1.2e+02 Score=23.58 Aligned_cols=16 Identities=6% Similarity=0.214 Sum_probs=8.2
Q ss_pred HHHHhcCCceeeccCC
Q 021708 88 PAILRKIPVVAFNQQD 103 (309)
Q Consensus 88 ~~~~~~lp~~~~~~~~ 103 (309)
+.....|..+-|.+++
T Consensus 72 RRsF~qLD~VYYTdD~ 87 (95)
T PHA02657 72 KTHFTRLDGVYYTDER 87 (95)
T ss_pred HHHHHhhcceEEcCCC
Confidence 3344455556665544
No 235
>CHL00080 psbM photosystem II protein M
Probab=25.91 E-value=93 Score=19.85 Aligned_cols=18 Identities=33% Similarity=0.586 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021708 29 IVLFFVVVFILFLHLYAK 46 (309)
Q Consensus 29 i~l~~vv~~iill~~~~~ 46 (309)
.++|+.+-.++++++|++
T Consensus 11 t~LFi~iPt~FLlilyvk 28 (34)
T CHL00080 11 TALFILVPTAFLLIIYVK 28 (34)
T ss_pred HHHHHHHHHHHHHHhhee
Confidence 344445555555555554
No 236
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=25.55 E-value=1.2e+02 Score=28.00 Aligned_cols=13 Identities=15% Similarity=0.429 Sum_probs=5.4
Q ss_pred cchhHHHHHHHHH
Q 021708 20 TGQIMVIAIIVLF 32 (309)
Q Consensus 20 ~~~i~~i~ii~l~ 32 (309)
...++...+++++
T Consensus 31 ~~~~~~~~~~~~~ 43 (247)
T COG1622 31 RDLIILSTLLMLV 43 (247)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444444
No 237
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=25.07 E-value=42 Score=27.44 Aligned_cols=13 Identities=46% Similarity=0.910 Sum_probs=11.8
Q ss_pred hhhhHhHHhhccC
Q 021708 274 TRLRSLKRLLSRE 286 (309)
Q Consensus 274 ~r~~s~~rl~~~~ 286 (309)
.|+|+++|||.++
T Consensus 4 ~riRdieRLL~r~ 16 (114)
T PF10153_consen 4 KRIRDIERLLKRK 16 (114)
T ss_pred HHHHHHHHHHcCC
Confidence 4899999999987
No 238
>PHA02844 putative transmembrane protein; Provisional
Probab=25.00 E-value=78 Score=23.86 Aligned_cols=25 Identities=16% Similarity=0.408 Sum_probs=14.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHH
Q 021708 18 EITGQIMVIAIIVLFFVVVFILFLH 42 (309)
Q Consensus 18 ~i~~~i~~i~ii~l~~vv~~iill~ 42 (309)
...+.+++++++++.+++++.++..
T Consensus 45 ~~~~~~~ii~i~~v~~~~~~~flYL 69 (75)
T PHA02844 45 SSSTKIWILTIIFVVFATFLTFLYL 69 (75)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655544
No 239
>PHA02819 hypothetical protein; Provisional
Probab=24.98 E-value=90 Score=23.29 Aligned_cols=28 Identities=21% Similarity=0.561 Sum_probs=16.6
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHHHH
Q 021708 16 SLEITGQIMVIAIIVLFFVVVFILFLHL 43 (309)
Q Consensus 16 ~~~i~~~i~~i~ii~l~~vv~~iill~~ 43 (309)
.-...+.+++++++++.+++++.++..-
T Consensus 41 ~~~~~~~~~ii~l~~~~~~~~~~flYLK 68 (71)
T PHA02819 41 KKSFLRYYLIIGLVTIVFVIIFIIFYLK 68 (71)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666666666666666666665443
No 240
>PF15050 SCIMP: SCIMP protein
Probab=24.86 E-value=1.5e+02 Score=24.48 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021708 25 VIAIIVLFFVVVFILFLHLYAKWFWW 50 (309)
Q Consensus 25 ~i~ii~l~~vv~~iill~~~~~~~~~ 50 (309)
+.+|+...++++.+++-+++.+.+.|
T Consensus 8 FWiiLAVaII~vS~~lglIlyCvcR~ 33 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGLILYCVCRW 33 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666665544
No 241
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=24.83 E-value=18 Score=23.88 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=13.5
Q ss_pred CCCCccchhHHHHHHhcCCCCcccCc
Q 021708 128 KCNHGFHVECIDMWFQSHSTCPLCRN 153 (309)
Q Consensus 128 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 153 (309)
+|||.|-...-..= .....||.|..
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 47776654321111 22456999976
No 242
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=24.67 E-value=1.2e+02 Score=25.23 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021708 30 VLFFVVVFILFLHLYAKWF 48 (309)
Q Consensus 30 ~l~~vv~~iill~~~~~~~ 48 (309)
.|++++.+++++.+++|.+
T Consensus 24 ~L~lVl~lI~~~aWLlkR~ 42 (124)
T PRK11486 24 ALIGIIALILAAAWLVKRL 42 (124)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3444555555555555544
No 243
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=24.56 E-value=61 Score=30.62 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=21.7
Q ss_pred ceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 122 KARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 122 ~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
.+.++|.|+|+.|..=|..- ...||.|.....
T Consensus 27 lw~KCp~c~~~~y~~eL~~n---~~vcp~c~~h~r 58 (294)
T COG0777 27 LWTKCPSCGEMLYRKELESN---LKVCPKCGHHMR 58 (294)
T ss_pred ceeECCCccceeeHHHHHhh---hhcccccCcccc
Confidence 35678889988666555542 346999987654
No 244
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=24.47 E-value=27 Score=37.66 Aligned_cols=33 Identities=24% Similarity=0.684 Sum_probs=24.2
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHH
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF 142 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl 142 (309)
..|-.|..-.- .....+++|+|.+|..|++.|.
T Consensus 230 ~mC~~C~~tlf--n~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 230 EMCDRCETTLF--NIHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred hhhhhhccccc--ceeEEccccCCeeeecchhhcc
Confidence 35777765532 2245678899999999999995
No 245
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=24.31 E-value=47 Score=30.54 Aligned_cols=26 Identities=31% Similarity=0.645 Sum_probs=19.5
Q ss_pred ceecccccccccCcceeecCCCCCccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFH 134 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH 134 (309)
..|++|...+...+.-..++ .+|.|-
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~-~~h~fd 28 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICP-QNHQFD 28 (272)
T ss_pred ccCCCCCcchhcCCCEEEcC-CCCCCc
Confidence 46999999997666555665 678883
No 246
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=24.12 E-value=49 Score=26.00 Aligned_cols=32 Identities=25% Similarity=0.563 Sum_probs=22.0
Q ss_pred CceecccccccccCcceeecCC--CCCccchhHHHHH
Q 021708 107 GLECAVCLSELEDGEKARLLPK--CNHGFHVECIDMW 141 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~--C~H~FH~~Ci~~W 141 (309)
...|.||.... |. ...... |...||..|...+
T Consensus 55 ~~~C~iC~~~~--G~-~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 55 KLKCSICGKSG--GA-CIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred CCcCcCCCCCC--ce-eEEcCCCCCCcCCCHHHHHHC
Confidence 46799999982 22 223323 8889999998663
No 247
>PRK11827 hypothetical protein; Provisional
Probab=24.09 E-value=31 Score=24.95 Aligned_cols=19 Identities=21% Similarity=0.475 Sum_probs=11.5
Q ss_pred HHHHhcCCCCcccCccccc
Q 021708 139 DMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 139 ~~Wl~~~~~CP~CR~~i~~ 157 (309)
++||..--.||+|+..+..
T Consensus 2 d~~LLeILaCP~ckg~L~~ 20 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLWY 20 (60)
T ss_pred ChHHHhheECCCCCCcCeE
Confidence 3455555567777766654
No 248
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=24.08 E-value=68 Score=24.98 Aligned_cols=37 Identities=24% Similarity=0.491 Sum_probs=28.6
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
..|.-|...+.-- ...| |-.|+..+..|..|++.|..
T Consensus 34 S~C~~C~~~L~~~---~lIP----------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 34 SHCPHCGHPLSWW---DLIP----------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CcCcCCCCcCccc---ccch----------HHHHHHhCCCCcccCCCCCh
Confidence 4688888887653 3445 77899999999999998864
No 249
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=23.89 E-value=1.5e+02 Score=23.42 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=5.1
Q ss_pred ccchhHHHHHHHH
Q 021708 19 ITGQIMVIAIIVL 31 (309)
Q Consensus 19 i~~~i~~i~ii~l 31 (309)
+-..+++.+++++
T Consensus 12 ie~sl~~~~~~l~ 24 (108)
T PF07219_consen 12 IETSLWVALILLL 24 (108)
T ss_pred EEeeHHHHHHHHH
Confidence 3334444433333
No 250
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=23.89 E-value=39 Score=31.18 Aligned_cols=40 Identities=30% Similarity=0.446 Sum_probs=29.7
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCC--Ccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHST--CPL 150 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~--CP~ 150 (309)
..|+|-+..+.. ..+-.+|+|.|-.+-|...|....+ ||.
T Consensus 190 nrCpitl~p~~~---pils~kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 190 NRCPITLNPDFY---PILSSKCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred ccCCcccCcchh---HHHHhhhcccccHHHHHHHhcCCceeecch
Confidence 369998887553 3444579999999999999986544 553
No 251
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=23.67 E-value=27 Score=40.07 Aligned_cols=49 Identities=31% Similarity=0.610 Sum_probs=36.8
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCccc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRNPV 155 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~i 155 (309)
....|-+|+......+.+ ++-.|.-.||..|++.-+.. ...||-||..-
T Consensus 1107 ~~~~c~~cr~k~~~~~m~-lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKML-LCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred chhhhhhhhhcccchhhh-hhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 345799999997764443 33348889999999999854 56799999766
No 252
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=23.60 E-value=72 Score=30.06 Aligned_cols=28 Identities=11% Similarity=0.422 Sum_probs=11.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021708 21 GQIMVIAIIVLFFVVVFILFLHLYAKWF 48 (309)
Q Consensus 21 ~~i~~i~ii~l~~vv~~iill~~~~~~~ 48 (309)
+.+++|.+.+.+.++++++++.+++.++
T Consensus 227 G~VVlIslAiALG~v~ll~l~Gii~~~~ 254 (281)
T PF12768_consen 227 GFVVLISLAIALGTVFLLVLIGIILAYI 254 (281)
T ss_pred eEEEEEehHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433333333333333333
No 253
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=23.59 E-value=60 Score=26.21 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=6.9
Q ss_pred CCcccCcccccC
Q 021708 147 TCPLCRNPVDVE 158 (309)
Q Consensus 147 ~CP~CR~~i~~~ 158 (309)
+||.|-..+...
T Consensus 28 vCP~CG~~~~~~ 39 (108)
T PF09538_consen 28 VCPKCGTEFPPE 39 (108)
T ss_pred cCCCCCCccCcc
Confidence 377776655544
No 254
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=23.55 E-value=1.1e+02 Score=26.47 Aligned_cols=23 Identities=22% Similarity=0.622 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021708 26 IAIIVLFFVVVFILFLHLYAKWF 48 (309)
Q Consensus 26 i~ii~l~~vv~~iill~~~~~~~ 48 (309)
++++++|++++.++++..|++-+
T Consensus 5 il~~iv~il~lvl~~l~~~Ir~l 27 (175)
T COG4741 5 ILILIVFILALVLYLLRAYIRSL 27 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555666544
No 255
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=23.42 E-value=12 Score=26.06 Aligned_cols=33 Identities=24% Similarity=0.620 Sum_probs=18.5
Q ss_pred eecc--cccccccCcc--e--eecCCCCCccchhHHHHH
Q 021708 109 ECAV--CLSELEDGEK--A--RLLPKCNHGFHVECIDMW 141 (309)
Q Consensus 109 ~C~I--Cl~~~~~~~~--~--~~lp~C~H~FH~~Ci~~W 141 (309)
.|+- |-..+...+. . ...+.|++.|+..|-..|
T Consensus 20 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 20 WCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp --TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred CCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 4665 6666544332 1 456669999999998877
No 256
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=23.38 E-value=33 Score=29.32 Aligned_cols=23 Identities=35% Similarity=0.885 Sum_probs=16.1
Q ss_pred CCCccchhHHHHHHhc-----------CCCCcccCcccc
Q 021708 129 CNHGFHVECIDMWFQS-----------HSTCPLCRNPVD 156 (309)
Q Consensus 129 C~H~FH~~Ci~~Wl~~-----------~~~CP~CR~~i~ 156 (309)
|+|.| +.||.. --+||+|-..-.
T Consensus 10 ~gH~F-----EgWF~ss~~fd~Q~~~glv~CP~Cgs~~V 43 (148)
T PF06676_consen 10 NGHEF-----EGWFRSSAAFDRQQARGLVSCPVCGSTEV 43 (148)
T ss_pred CCCcc-----ceecCCHHHHHHHHHcCCccCCCCCCCeE
Confidence 67887 578854 346999965443
No 257
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=23.29 E-value=47 Score=30.98 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=30.4
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhc--CCCCcccCcc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS--HSTCPLCRNP 154 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~ 154 (309)
..|+|=...+... .+-.+|||+|-.+=|...+.. .-.||+=-..
T Consensus 177 ~rdPis~~~I~nP---viSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 177 NRDPISKKPIVNP---VISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred ccCchhhhhhhch---hhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 3588877776652 233369999999999999866 3348774433
No 258
>PHA03049 IMV membrane protein; Provisional
Probab=23.17 E-value=1.4e+02 Score=22.12 Aligned_cols=9 Identities=22% Similarity=0.265 Sum_probs=4.0
Q ss_pred CCCHHHHhc
Q 021708 85 GLDPAILRK 93 (309)
Q Consensus 85 g~~~~~~~~ 93 (309)
.++...+++
T Consensus 52 ~L~~~hl~S 60 (68)
T PHA03049 52 KLKSSHLNS 60 (68)
T ss_pred hcCHHHHHH
Confidence 344444444
No 259
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=22.87 E-value=90 Score=24.16 Aligned_cols=16 Identities=25% Similarity=0.386 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHHHHHH
Q 021708 22 QIMVIAIIVLFFVVVF 37 (309)
Q Consensus 22 ~i~~i~ii~l~~vv~~ 37 (309)
.||.+..++++++.+.
T Consensus 18 yiiA~gga~llL~~v~ 33 (87)
T PF11980_consen 18 YIIAMGGALLLLVAVC 33 (87)
T ss_pred HHHhhccHHHHHHHHH
Confidence 3333333344333333
No 260
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=22.73 E-value=54 Score=29.52 Aligned_cols=50 Identities=22% Similarity=0.414 Sum_probs=28.6
Q ss_pred CceecccccccccCcc----eeecC----CCCCccchhHHHHHHhcCCCCcccCcccccCC
Q 021708 107 GLECAVCLSELEDGEK----ARLLP----KCNHGFHVECIDMWFQSHSTCPLCRNPVDVER 159 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~----~~~lp----~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 159 (309)
...|++|-.+|..... +++.. -|.|.=. +.+.+..-.+||.|--......
T Consensus 5 ~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~---vnP~~Y~V~vCP~CgyA~~~~~ 62 (214)
T PF09986_consen 5 KITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKG---VNPLFYEVWVCPHCGYAAFEED 62 (214)
T ss_pred ceECCCCCCeeeeeEEEcCCceEeeecCCCccccCC---CCCeeeeEEECCCCCCcccccc
Confidence 4579999999985321 11110 0332211 5555555567999977666543
No 261
>PLN00090 photosystem II reaction center M protein; Provisional
Probab=22.64 E-value=1.6e+02 Score=23.34 Aligned_cols=25 Identities=8% Similarity=0.150 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 021708 23 IMVIAIIVLFFVVVFILFLHLYAKW 47 (309)
Q Consensus 23 i~~i~ii~l~~vv~~iill~~~~~~ 47 (309)
++-++...||+++-.++++++|++-
T Consensus 75 iLafIATaLFIlIPTaFLLILYVQT 99 (113)
T PLN00090 75 FGAYLAVALGTFLPCLFLINLFIQT 99 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333344555556666666677764
No 262
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=22.59 E-value=2.4e+02 Score=20.15 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=11.2
Q ss_pred CCCCCCCCCCcccCCCccccchhHHHH
Q 021708 1 MSASDGDENGFQNTGSLEITGQIMVIA 27 (309)
Q Consensus 1 ~s~~~~~~~~~~~~~~~~i~~~i~~i~ 27 (309)
||..+.+++. .+....|....++++.
T Consensus 1 Ms~~~~~~~~-~~~k~~E~~~flfl~~ 26 (56)
T PF06796_consen 1 MSSQPKSESD-KSTKRSELKAFLFLAV 26 (56)
T ss_pred CCCCCCCccc-cchhHHHHHHHHHHHH
Confidence 5555544333 3334444444333333
No 263
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=22.43 E-value=47 Score=20.17 Aligned_cols=28 Identities=25% Similarity=0.527 Sum_probs=18.1
Q ss_pred eecccccccccCcceeecCCCCCccchhH
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVEC 137 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~C 137 (309)
.|.||..++.... .-...+|...+|..|
T Consensus 2 ~C~~C~~~~~~~~-~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-FYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCE-eEEeCCCCCeEcCcc
Confidence 4889987766543 333334777788777
No 264
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=22.26 E-value=39 Score=32.07 Aligned_cols=31 Identities=26% Similarity=0.728 Sum_probs=23.1
Q ss_pred eecccccccccCcceeecCCCCCccchhHHHH
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDM 140 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~ 140 (309)
.|.||+....+.+.+ ++-.|...||.-|+.-
T Consensus 316 lC~IC~~P~~E~E~~-FCD~CDRG~HT~CVGL 346 (381)
T KOG1512|consen 316 LCRICLGPVIESEHL-FCDVCDRGPHTLCVGL 346 (381)
T ss_pred hhhccCCcccchhee-ccccccCCCCcccccc
Confidence 489999987766555 4445999999999753
No 265
>PLN00055 photosystem II reaction center protein H; Provisional
Probab=22.26 E-value=1.3e+02 Score=22.54 Aligned_cols=7 Identities=0% Similarity=0.358 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 021708 25 VIAIIVL 31 (309)
Q Consensus 25 ~i~ii~l 31 (309)
+++++++
T Consensus 42 ~Mg~~m~ 48 (73)
T PLN00055 42 LMGVAMA 48 (73)
T ss_pred HHHHHHH
Confidence 3444333
No 266
>CHL00066 psbH photosystem II protein H
Probab=22.19 E-value=1.3e+02 Score=22.50 Aligned_cols=7 Identities=0% Similarity=0.358 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 021708 25 VIAIIVL 31 (309)
Q Consensus 25 ~i~ii~l 31 (309)
+++++++
T Consensus 42 ~Mgv~m~ 48 (73)
T CHL00066 42 LMGVAMA 48 (73)
T ss_pred HHHHHHH
Confidence 3444333
No 267
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=21.97 E-value=44 Score=37.16 Aligned_cols=38 Identities=21% Similarity=0.462 Sum_probs=29.0
Q ss_pred CCCCCCceeccccccccc-CcceeecCCCCCccchhHHH
Q 021708 102 QDFKDGLECAVCLSELED-GEKARLLPKCNHGFHVECID 139 (309)
Q Consensus 102 ~~~~~~~~C~ICl~~~~~-~~~~~~lp~C~H~FH~~Ci~ 139 (309)
...+.+..|.||++--.. .+.+..+-.|+-..|.+|+.
T Consensus 214 ~~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg 252 (1051)
T KOG0955|consen 214 ALLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG 252 (1051)
T ss_pred cccCCCccceeecccccCCCceEEEcCCCcchhhhhccC
Confidence 445667889999987443 34566676799999999998
No 268
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=21.97 E-value=1.8e+02 Score=22.47 Aligned_cols=13 Identities=15% Similarity=0.465 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 021708 36 VFILFLHLYAKWF 48 (309)
Q Consensus 36 ~~iill~~~~~~~ 48 (309)
+|+++|++.++++
T Consensus 24 ~fL~lLi~~~~l~ 36 (85)
T PRK03814 24 IFLTLLVYLVQLM 36 (85)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444433
No 269
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=21.94 E-value=2e+02 Score=21.86 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021708 28 IIVLFFVVVFILFLHLYAKWF 48 (309)
Q Consensus 28 ii~l~~vv~~iill~~~~~~~ 48 (309)
++...+|++++++|++.++..
T Consensus 12 v~GM~~VF~fL~lLi~~i~~~ 32 (82)
T TIGR01195 12 VLGMGIVFLFLSLLIYAVRGM 32 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 270
>PF03554 Herpes_UL73: UL73 viral envelope glycoprotein ; InterPro: IPR005211 This entry represents a conserved region found in a number of viral proteins: BLRF1, U46, 53, and UL73, collectively known as glycoprotein N. These UL73-like envelope glycoproteins, which associate in a high molecular mass complex with their counterpart protein gM, induce neutralizing antibody responses in the host. These glycoproteins are highly polymorphic, particularly in the N-terminal region [].; GO: 0019031 viral envelope
Probab=21.88 E-value=1.6e+02 Score=22.64 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=12.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 021708 18 EITGQIMVIAIIVLFFVVVFILFLHLYAK 46 (309)
Q Consensus 18 ~i~~~i~~i~ii~l~~vv~~iill~~~~~ 46 (309)
.....||.++-++++++..++.+.+++.+
T Consensus 46 ~SFsSIW~iiN~~il~~A~~vyLry~Cf~ 74 (82)
T PF03554_consen 46 SSFSSIWAIINVVILLCAFCVYLRYLCFQ 74 (82)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555544444444444444444333
No 271
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=21.73 E-value=1.7e+02 Score=22.52 Aligned_cols=29 Identities=14% Similarity=0.353 Sum_probs=16.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021708 21 GQIMVIAIIVLFFVVVFILFLHLYAKWFW 49 (309)
Q Consensus 21 ~~i~~i~ii~l~~vv~~iill~~~~~~~~ 49 (309)
..+|++...+.|+++++++++..+..++.
T Consensus 12 ~~lm~~GM~~VF~fL~lLi~~~~l~~~~~ 40 (85)
T PRK03814 12 ATLMLTGMGVVFIFLTLLVYLVQLMSKLI 40 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44566666555566655555555555553
No 272
>PLN02248 cellulose synthase-like protein
Probab=21.68 E-value=95 Score=34.81 Aligned_cols=29 Identities=28% Similarity=0.620 Sum_probs=26.2
Q ss_pred CCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 129 CNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 129 C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
|++..|.+|...-++....||-|+.++..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1135)
T PLN02248 150 CGFKICRDCYIDAVKSGGICPGCKEPYKV 178 (1135)
T ss_pred ccchhHHhHhhhhhhcCCCCCCCcccccc
Confidence 88899999999999999999999998844
No 273
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=21.67 E-value=1.4e+02 Score=24.88 Aligned_cols=24 Identities=17% Similarity=0.348 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 021708 23 IMVIAIIVLFFVVVFILFLHLYAK 46 (309)
Q Consensus 23 i~~i~ii~l~~vv~~iill~~~~~ 46 (309)
++.|++++.|+.++.+.++.-|+|
T Consensus 44 ~lYIL~vmgfFgff~~gImlsyvR 67 (129)
T PF02060_consen 44 YLYILVVMGFFGFFTVGIMLSYVR 67 (129)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444445554
No 274
>KOG3352 consensus Cytochrome c oxidase, subunit Vb/COX4 [Energy production and conversion]
Probab=21.36 E-value=48 Score=28.40 Aligned_cols=7 Identities=29% Similarity=0.904 Sum_probs=4.4
Q ss_pred eecccccc
Q 021708 109 ECAVCLSE 116 (309)
Q Consensus 109 ~C~ICl~~ 116 (309)
-| +|.++
T Consensus 113 GC-~c~eD 119 (153)
T KOG3352|consen 113 GC-GCEED 119 (153)
T ss_pred ee-cccCC
Confidence 36 77665
No 275
>PRK14094 psbM photosystem II reaction center protein M; Provisional
Probab=21.16 E-value=65 Score=22.14 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021708 29 IVLFFVVVFILFLHLYAK 46 (309)
Q Consensus 29 i~l~~vv~~iill~~~~~ 46 (309)
.++|+.+-.++++++|++
T Consensus 11 taLFi~iPT~FLlilYVk 28 (50)
T PRK14094 11 SLLFVGVPTIFLIGLFIS 28 (50)
T ss_pred HHHHHHHHHHHhhheeEE
Confidence 344555555555556554
No 276
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=21.02 E-value=2e+02 Score=25.49 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=9.9
Q ss_pred cchhHHHHHH--hcCCCCc
Q 021708 133 FHVECIDMWF--QSHSTCP 149 (309)
Q Consensus 133 FH~~Ci~~Wl--~~~~~CP 149 (309)
.+.+-+..|| ..+..||
T Consensus 124 ~~G~~~R~~L~~Lr~~~~p 142 (186)
T PF07406_consen 124 LPGENFRSYLLDLRNSSTP 142 (186)
T ss_pred cccccHHHHHHHHHhccCC
Confidence 4556777887 4344444
No 277
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=20.56 E-value=53 Score=26.55 Aligned_cols=47 Identities=19% Similarity=0.386 Sum_probs=27.2
Q ss_pred CCceecccccccccC-cceeecCCCCCccchhHHHHHHhc--CCCCcccCc
Q 021708 106 DGLECAVCLSELEDG-EKARLLPKCNHGFHVECIDMWFQS--HSTCPLCRN 153 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~ 153 (309)
+...|.+|...|.-- ..-.....|+|.+|..|-.. ... ...|-+|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 456899999986432 12245556999999988544 111 113777753
No 278
>PHA03030 hypothetical protein; Provisional
Probab=20.42 E-value=81 Score=25.31 Aligned_cols=7 Identities=14% Similarity=0.600 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 021708 41 LHLYAKW 47 (309)
Q Consensus 41 l~~~~~~ 47 (309)
+++|++.
T Consensus 17 iffYI~~ 23 (122)
T PHA03030 17 IFFYIRI 23 (122)
T ss_pred HHHHhee
Confidence 3344443
No 279
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=20.41 E-value=58 Score=30.06 Aligned_cols=26 Identities=19% Similarity=0.445 Sum_probs=16.2
Q ss_pred ceecccccccccCcceeecCCCCCccchh
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVE 136 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~ 136 (309)
..|+.|-. + ......+|.|||.+|.+
T Consensus 310 ~~C~~cg~-~--~~r~~~C~~cg~~~~rD 335 (364)
T COG0675 310 KTCPCCGH-L--SGRLFKCPRCGFVHDRD 335 (364)
T ss_pred ccccccCC-c--cceeEECCCCCCeehhh
Confidence 46888777 2 22344566677777765
No 280
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=20.31 E-value=37 Score=32.51 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=27.5
Q ss_pred CceecccccccccCcceeecCCC--CCccchhHHHHHHhcCCCCcccCc
Q 021708 107 GLECAVCLSELEDGEKARLLPKC--NHGFHVECIDMWFQSHSTCPLCRN 153 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C--~H~FH~~Ci~~Wl~~~~~CP~CR~ 153 (309)
...|+||-..=... .++.-.+= .|.+|.-|-..|-.....||.|-.
T Consensus 187 ~~~CPvCGs~P~~s-~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 187 RQFCPVCGSMPVSS-VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCcchhh-eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 45799998762211 01110011 245666777788777888999964
No 281
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=20.29 E-value=32 Score=35.37 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=45.9
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCC
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER 159 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 159 (309)
....|.+|+......+...++..|.|.+...|+..|=.....|+.|...+....
T Consensus 259 ~~~~~~~~~~~~~~~eqk~l~~~~~~~~g~tsl~~e~~~~~v~~~~~tk~~~~~ 312 (553)
T KOG4430|consen 259 NKNACGLCLSEADAKEQKGLEGNNQRQTGATSLMEEEAVESVCPLRVTKVRTIS 312 (553)
T ss_pred cccchhhchhhHhHHHhhhhhhcccchhhhhhhhhhhhhhhhhhcccccccccc
Confidence 345799999999888888888768899999999999988899999999876543
No 282
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=20.28 E-value=79 Score=20.39 Aligned_cols=34 Identities=18% Similarity=0.367 Sum_probs=23.8
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHH
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDM 140 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~ 140 (309)
...|.+|.+.+...........|+=..|..|...
T Consensus 11 ~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~ 44 (49)
T smart00109 11 PTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEK 44 (49)
T ss_pred CCCccccccccCcCCCCcCCCCCCchHHHHHHhh
Confidence 4569999998875322233445888899999876
Done!