Query 021708
Match_columns 309
No_of_seqs 296 out of 2090
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 08:07:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021708.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021708hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 6.2E-17 2.1E-21 125.4 6.1 75 82-157 13-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 4.1E-16 1.4E-20 116.2 4.8 67 91-158 6-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 3.1E-15 1.1E-19 104.5 4.4 52 105-156 3-54 (55)
4 2ep4_A Ring finger protein 24; 99.5 1.4E-14 4.7E-19 107.3 5.6 55 104-159 12-66 (74)
5 2kiz_A E3 ubiquitin-protein li 99.5 1.6E-14 5.4E-19 105.6 5.7 55 104-159 11-65 (69)
6 2ect_A Ring finger protein 126 99.5 1.5E-14 5.1E-19 108.2 5.4 56 103-159 11-66 (78)
7 1v87_A Deltex protein 2; ring- 99.5 3.5E-14 1.2E-18 113.7 7.4 63 106-169 24-106 (114)
8 2ecl_A Ring-box protein 2; RNF 99.5 2.1E-14 7.1E-19 108.9 3.3 53 106-158 14-77 (81)
9 2ea6_A Ring finger protein 4; 99.4 3.2E-13 1.1E-17 98.0 4.2 52 104-156 12-67 (69)
10 2ecm_A Ring finger and CHY zin 99.4 2.8E-13 9.7E-18 94.3 3.7 50 106-156 4-54 (55)
11 3ng2_A RNF4, snurf, ring finge 99.4 2.8E-13 9.4E-18 99.1 3.5 53 105-158 8-64 (71)
12 3dpl_R Ring-box protein 1; ubi 99.3 6.4E-13 2.2E-17 106.0 4.3 51 106-157 36-101 (106)
13 2xeu_A Ring finger protein 4; 99.3 5E-13 1.7E-17 95.5 3.1 52 106-158 2-57 (64)
14 2ecn_A Ring finger protein 141 99.3 9.4E-13 3.2E-17 96.3 2.9 50 104-158 12-61 (70)
15 2d8s_A Cellular modulator of i 99.3 2.1E-12 7.2E-17 97.9 4.9 53 105-159 13-72 (80)
16 2d8t_A Dactylidin, ring finger 99.3 1.4E-12 4.9E-17 95.8 3.7 50 105-158 13-62 (71)
17 2djb_A Polycomb group ring fin 99.3 3.3E-12 1.1E-16 94.1 5.3 54 103-159 11-64 (72)
18 2ct2_A Tripartite motif protei 99.3 3E-12 1E-16 97.3 5.0 56 102-158 10-69 (88)
19 1chc_A Equine herpes virus-1 r 99.3 4E-12 1.4E-16 92.3 4.7 49 106-157 4-52 (68)
20 4a0k_B E3 ubiquitin-protein li 99.2 7.4E-13 2.5E-17 107.4 0.3 52 106-157 47-112 (117)
21 2ysl_A Tripartite motif-contai 99.2 8.8E-12 3E-16 91.6 4.9 51 104-158 17-70 (73)
22 2csy_A Zinc finger protein 183 99.2 7.3E-12 2.5E-16 94.3 4.5 49 104-156 12-60 (81)
23 2ecy_A TNF receptor-associated 99.2 1.1E-11 3.8E-16 89.6 4.9 51 104-158 12-63 (66)
24 2ct0_A Non-SMC element 1 homol 99.2 1.7E-11 5.9E-16 91.4 5.2 51 106-159 14-66 (74)
25 2yur_A Retinoblastoma-binding 99.2 1.4E-11 4.9E-16 91.3 4.7 52 103-157 11-64 (74)
26 4ayc_A E3 ubiquitin-protein li 99.2 9.5E-12 3.3E-16 103.2 3.1 48 106-157 52-99 (138)
27 2ecv_A Tripartite motif-contai 99.1 4.8E-11 1.7E-15 89.6 5.9 51 104-158 16-72 (85)
28 2ecw_A Tripartite motif-contai 99.1 3.6E-11 1.2E-15 90.3 4.8 51 104-158 16-72 (85)
29 2egp_A Tripartite motif-contai 99.1 2.1E-11 7.1E-16 90.9 3.2 51 103-157 8-65 (79)
30 1t1h_A Gspef-atpub14, armadill 99.1 4.2E-11 1.4E-15 89.2 4.7 51 104-158 5-56 (78)
31 2ysj_A Tripartite motif-contai 99.1 5.4E-11 1.9E-15 85.1 4.6 45 103-151 16-63 (63)
32 4ap4_A E3 ubiquitin ligase RNF 99.1 3.7E-11 1.3E-15 97.6 3.6 52 106-158 6-61 (133)
33 3lrq_A E3 ubiquitin-protein li 99.1 4.2E-11 1.4E-15 94.0 3.6 49 106-158 21-71 (100)
34 2ecj_A Tripartite motif-contai 99.1 8.3E-11 2.8E-15 82.4 4.0 44 104-151 12-58 (58)
35 2y43_A E3 ubiquitin-protein li 99.1 9.1E-11 3.1E-15 91.5 4.1 48 106-157 21-69 (99)
36 3ztg_A E3 ubiquitin-protein li 99.0 1.3E-10 4.4E-15 89.3 4.7 51 103-156 9-61 (92)
37 1g25_A CDK-activating kinase a 99.0 1.2E-10 4.1E-15 83.9 4.2 50 107-157 3-55 (65)
38 2ckl_A Polycomb group ring fin 99.0 8.4E-11 2.9E-15 93.2 3.6 51 105-158 13-63 (108)
39 4ap4_A E3 ubiquitin ligase RNF 99.0 8.4E-11 2.9E-15 95.4 3.2 53 105-158 70-126 (133)
40 2ckl_B Ubiquitin ligase protei 99.0 1.1E-10 3.9E-15 99.3 3.9 49 106-157 53-102 (165)
41 3fl2_A E3 ubiquitin-protein li 99.0 3.2E-10 1.1E-14 92.0 5.1 48 106-157 51-99 (124)
42 1jm7_A BRCA1, breast cancer ty 99.0 3.7E-10 1.2E-14 89.6 4.0 48 107-158 21-71 (112)
43 3hct_A TNF receptor-associated 98.9 3.9E-10 1.3E-14 90.9 3.1 52 103-158 14-66 (118)
44 1z6u_A NP95-like ring finger p 98.9 7.2E-10 2.4E-14 93.4 4.2 49 106-158 77-126 (150)
45 3l11_A E3 ubiquitin-protein li 98.9 1.5E-10 5E-15 92.8 -0.1 48 106-157 14-62 (115)
46 1bor_A Transcription factor PM 98.9 3.9E-10 1.3E-14 79.2 1.7 47 105-158 4-50 (56)
47 1e4u_A Transcriptional repress 98.9 2.7E-09 9.1E-14 80.3 6.4 55 104-159 8-64 (78)
48 2vje_A E3 ubiquitin-protein li 98.9 8.2E-10 2.8E-14 79.8 2.5 47 106-156 7-56 (64)
49 1rmd_A RAG1; V(D)J recombinati 98.8 1.2E-09 4.1E-14 87.5 3.6 48 107-158 23-71 (116)
50 2kr4_A Ubiquitin conjugation f 98.8 2.4E-09 8.1E-14 81.7 4.4 49 105-157 12-60 (85)
51 2y1n_A E3 ubiquitin-protein li 98.8 1.7E-09 5.9E-14 103.9 4.2 48 107-158 332-380 (389)
52 2kre_A Ubiquitin conjugation f 98.8 3.1E-09 1.1E-13 83.6 4.6 50 104-157 26-75 (100)
53 2vje_B MDM4 protein; proto-onc 98.8 1.7E-09 5.8E-14 77.9 2.4 49 106-156 6-55 (63)
54 1wgm_A Ubiquitin conjugation f 98.8 4.2E-09 1.5E-13 82.5 4.9 49 105-157 20-69 (98)
55 3k1l_B Fancl; UBC, ring, RWD, 98.8 1.3E-09 4.6E-14 102.5 2.3 53 105-157 306-373 (381)
56 3knv_A TNF receptor-associated 98.8 1.7E-09 5.7E-14 90.3 2.1 50 104-157 28-78 (141)
57 1jm7_B BARD1, BRCA1-associated 98.7 4.3E-09 1.5E-13 84.6 2.8 46 106-157 21-67 (117)
58 4ic3_A E3 ubiquitin-protein li 98.7 2.7E-09 9.2E-14 79.1 1.4 44 106-157 23-67 (74)
59 1vyx_A ORF K3, K3RING; zinc-bi 98.6 3.5E-08 1.2E-12 70.5 4.7 48 105-156 4-58 (60)
60 3hcs_A TNF receptor-associated 98.6 1.7E-08 5.9E-13 86.0 3.1 52 103-158 14-66 (170)
61 2yu4_A E3 SUMO-protein ligase 98.6 2.4E-08 8.3E-13 77.3 3.6 49 105-156 5-62 (94)
62 2ea5_A Cell growth regulator w 98.6 4.7E-08 1.6E-12 71.4 4.2 45 106-158 14-59 (68)
63 2c2l_A CHIP, carboxy terminus 98.5 3.5E-08 1.2E-12 89.5 4.1 50 104-157 205-255 (281)
64 2ecg_A Baculoviral IAP repeat- 98.5 4.9E-08 1.7E-12 72.3 3.0 43 107-157 25-68 (75)
65 1wim_A KIAA0161 protein; ring 98.4 6.2E-08 2.1E-12 74.7 2.6 48 106-154 4-61 (94)
66 2f42_A STIP1 homology and U-bo 98.4 1.3E-07 4.5E-12 81.8 3.9 51 103-157 102-153 (179)
67 2yho_A E3 ubiquitin-protein li 98.4 9.4E-08 3.2E-12 71.8 2.1 44 107-158 18-62 (79)
68 3t6p_A Baculoviral IAP repeat- 98.2 2E-07 7E-12 88.5 1.1 44 106-157 294-338 (345)
69 2bay_A PRE-mRNA splicing facto 98.2 5.8E-07 2E-11 64.2 2.2 48 108-158 4-51 (61)
70 3htk_C E3 SUMO-protein ligase 98.1 1.3E-06 4.6E-11 79.5 3.2 49 106-157 180-232 (267)
71 3nw0_A Non-structural maintena 98.0 5.1E-06 1.7E-10 74.9 5.9 50 107-159 180-231 (238)
72 3vk6_A E3 ubiquitin-protein li 97.9 7.5E-06 2.6E-10 63.8 3.4 46 109-157 3-49 (101)
73 2lri_C Autoimmune regulator; Z 95.1 0.018 6.3E-07 41.3 3.7 46 106-155 11-60 (66)
74 2ko5_A Ring finger protein Z; 93.8 0.061 2.1E-06 41.2 4.2 49 106-159 27-75 (99)
75 1we9_A PHD finger family prote 92.7 0.034 1.2E-06 39.2 1.2 49 105-153 4-57 (64)
76 2l5u_A Chromodomain-helicase-D 92.3 0.079 2.7E-06 37.2 2.6 47 103-153 7-57 (61)
77 2k16_A Transcription initiatio 91.7 0.071 2.4E-06 38.8 1.8 52 105-157 16-71 (75)
78 3lqh_A Histone-lysine N-methyl 91.3 0.071 2.4E-06 45.9 1.8 48 108-155 3-64 (183)
79 2jun_A Midline-1; B-BOX, TRIM, 91.2 0.1 3.5E-06 39.7 2.5 34 107-141 3-36 (101)
80 1wil_A KIAA1045 protein; ring 90.5 0.33 1.1E-05 36.4 4.4 36 104-141 12-47 (89)
81 3u5n_A E3 ubiquitin-protein li 89.4 0.091 3.1E-06 45.7 0.8 46 105-154 5-54 (207)
82 1mm2_A MI2-beta; PHD, zinc fin 88.7 0.15 5.1E-06 35.7 1.4 47 105-155 7-57 (61)
83 3o36_A Transcription intermedi 88.3 0.12 4.1E-06 44.1 0.7 46 106-155 3-52 (184)
84 1wep_A PHF8; structural genomi 88.2 0.58 2E-05 34.3 4.4 48 107-155 12-64 (79)
85 2xb1_A Pygopus homolog 2, B-ce 87.0 0.08 2.7E-06 41.4 -1.0 48 108-155 4-62 (105)
86 2yt5_A Metal-response element- 86.8 0.14 4.7E-06 36.2 0.2 51 105-155 4-62 (66)
87 2l43_A N-teminal domain from h 86.7 0.21 7.3E-06 37.6 1.3 52 105-156 23-77 (88)
88 2kgg_A Histone demethylase jar 86.6 0.22 7.4E-06 33.7 1.1 43 110-152 5-52 (52)
89 1wee_A PHD finger family prote 86.5 0.11 3.7E-06 37.6 -0.5 48 106-154 15-66 (72)
90 2yql_A PHD finger protein 21A; 86.5 0.094 3.2E-06 36.0 -0.8 46 104-153 6-55 (56)
91 1wev_A Riken cDNA 1110020M19; 85.4 0.17 5.9E-06 38.1 0.2 50 107-156 16-74 (88)
92 2ri7_A Nucleosome-remodeling f 85.0 0.19 6.4E-06 42.3 0.2 48 106-154 7-59 (174)
93 2ku3_A Bromodomain-containing 84.1 0.35 1.2E-05 35.0 1.3 49 105-153 14-65 (71)
94 2vpb_A Hpygo1, pygopus homolog 83.6 0.68 2.3E-05 32.9 2.6 47 106-152 7-64 (65)
95 2lbm_A Transcriptional regulat 83.0 1.3 4.3E-05 36.5 4.4 46 104-153 60-116 (142)
96 1xwh_A Autoimmune regulator; P 82.9 0.37 1.3E-05 34.1 1.0 45 105-153 6-54 (66)
97 1wem_A Death associated transc 82.6 0.5 1.7E-05 34.3 1.6 46 108-155 17-71 (76)
98 1fp0_A KAP-1 corepressor; PHD 82.4 1 3.5E-05 34.0 3.3 46 105-154 23-72 (88)
99 1weu_A Inhibitor of growth fam 81.5 1.1 3.8E-05 34.0 3.3 47 106-155 35-86 (91)
100 1f62_A Transcription factor WS 81.0 0.77 2.6E-05 30.5 2.0 44 109-153 2-49 (51)
101 2puy_A PHD finger protein 21A; 81.0 0.18 6.1E-06 35.1 -1.3 47 106-156 4-54 (60)
102 3ql9_A Transcriptional regulat 80.6 1.7 5.9E-05 35.1 4.3 47 103-153 53-110 (129)
103 3v43_A Histone acetyltransfera 80.4 0.5 1.7E-05 37.0 1.0 45 109-153 63-111 (112)
104 3o70_A PHD finger protein 13; 80.0 0.41 1.4E-05 34.3 0.4 46 106-153 18-66 (68)
105 1weo_A Cellulose synthase, cat 79.1 4 0.00014 30.8 5.5 54 107-160 16-73 (93)
106 1wen_A Inhibitor of growth fam 78.7 1.7 5.8E-05 31.3 3.3 45 106-155 15-66 (71)
107 3v43_A Histone acetyltransfera 78.4 2.7 9.4E-05 32.6 4.8 47 106-152 4-62 (112)
108 2ro1_A Transcription intermedi 77.9 0.64 2.2E-05 39.9 1.0 44 107-154 2-49 (189)
109 2lv9_A Histone-lysine N-methyl 77.4 0.76 2.6E-05 35.2 1.2 44 108-153 29-75 (98)
110 2ysm_A Myeloid/lymphoid or mix 77.2 0.75 2.6E-05 35.7 1.1 46 106-152 6-55 (111)
111 1wew_A DNA-binding family prot 76.3 1 3.5E-05 32.9 1.6 48 106-155 15-73 (78)
112 2e6r_A Jumonji/ARID domain-con 74.4 0.46 1.6E-05 36.1 -0.8 50 104-154 13-66 (92)
113 2cs3_A Protein C14ORF4, MY039 72.7 3.1 0.00011 30.9 3.4 38 106-144 14-52 (93)
114 2kwj_A Zinc finger protein DPF 72.6 1.1 3.7E-05 35.2 1.0 45 108-152 2-59 (114)
115 3m62_A Ubiquitin conjugation f 70.3 3.3 0.00011 43.9 4.3 51 104-158 888-939 (968)
116 4gne_A Histone-lysine N-methyl 70.2 3.6 0.00012 32.0 3.5 49 104-158 12-66 (107)
117 1z60_A TFIIH basal transcripti 69.9 3.7 0.00013 28.6 3.1 42 108-151 16-58 (59)
118 3kqi_A GRC5, PHD finger protei 69.3 1.8 6.1E-05 31.3 1.4 47 109-155 11-62 (75)
119 2rsd_A E3 SUMO-protein ligase 66.2 0.64 2.2E-05 33.1 -1.5 44 108-153 11-64 (68)
120 1vfy_A Phosphatidylinositol-3- 65.8 4.2 0.00014 29.1 2.8 35 107-141 11-45 (73)
121 3asl_A E3 ubiquitin-protein li 65.7 1.8 6.3E-05 30.9 0.9 44 109-153 20-68 (70)
122 1y02_A CARP2, FYVE-ring finger 65.7 0.86 3E-05 36.4 -1.0 48 108-155 20-67 (120)
123 2vnf_A ING 4, P29ING4, inhibit 65.4 1.6 5.4E-05 30.3 0.5 43 106-153 9-58 (60)
124 3c6w_A P28ING5, inhibitor of g 64.8 1.7 5.9E-05 30.0 0.5 43 106-153 8-57 (59)
125 2yw8_A RUN and FYVE domain-con 64.4 4.5 0.00015 29.7 2.8 35 107-141 19-53 (82)
126 3t7l_A Zinc finger FYVE domain 64.2 3.6 0.00012 30.8 2.3 36 107-142 20-55 (90)
127 1wyh_A SLIM 2, skeletal muscle 63.9 6.6 0.00023 27.2 3.6 41 107-157 5-45 (72)
128 1z2q_A LM5-1; membrane protein 63.6 4.9 0.00017 29.6 2.9 35 107-141 21-55 (84)
129 1joc_A EEA1, early endosomal a 63.5 3.6 0.00012 32.8 2.3 34 108-141 70-103 (125)
130 1dvp_A HRS, hepatocyte growth 63.0 3.3 0.00011 35.9 2.2 37 106-142 160-196 (220)
131 3ask_A E3 ubiquitin-protein li 62.8 1.9 6.6E-05 38.1 0.6 44 109-153 176-224 (226)
132 1wfk_A Zinc finger, FYVE domai 62.3 5.1 0.00018 29.9 2.8 51 106-156 8-65 (88)
133 3shb_A E3 ubiquitin-protein li 61.8 1.5 5E-05 32.2 -0.3 43 110-153 29-76 (77)
134 3zyq_A Hepatocyte growth facto 61.8 4.2 0.00014 35.6 2.7 37 106-142 163-199 (226)
135 3kv5_D JMJC domain-containing 60.9 1.9 6.3E-05 42.4 0.2 47 108-155 38-89 (488)
136 2jmi_A Protein YNG1, ING1 homo 60.4 2.3 7.9E-05 32.1 0.6 46 105-153 24-75 (90)
137 1x4u_A Zinc finger, FYVE domai 59.3 5.6 0.00019 29.2 2.6 34 107-140 14-47 (84)
138 2g6q_A Inhibitor of growth pro 57.6 2.7 9.3E-05 29.3 0.5 45 106-153 10-59 (62)
139 2e6s_A E3 ubiquitin-protein li 55.8 2.4 8.1E-05 31.0 -0.0 44 109-153 28-76 (77)
140 3mpx_A FYVE, rhogef and PH dom 55.5 2.5 8.4E-05 40.1 0.0 49 107-155 375-430 (434)
141 2co8_A NEDD9 interacting prote 55.0 11 0.00038 27.0 3.6 41 106-157 14-54 (82)
142 3o7a_A PHD finger protein 13 v 54.9 2.3 8E-05 28.4 -0.2 41 112-153 8-51 (52)
143 1x61_A Thyroid receptor intera 54.7 7.4 0.00025 26.9 2.5 39 108-156 6-44 (72)
144 1x4k_A Skeletal muscle LIM-pro 54.4 7.1 0.00024 27.0 2.3 40 108-157 6-45 (72)
145 1x4l_A Skeletal muscle LIM-pro 53.7 8.1 0.00028 26.8 2.6 39 108-156 6-46 (72)
146 2dj7_A Actin-binding LIM prote 53.7 8.9 0.0003 27.5 2.8 39 107-156 15-53 (80)
147 1g47_A Pinch protein; LIM doma 53.6 8.9 0.0003 26.8 2.8 41 107-157 11-51 (77)
148 2pv0_B DNA (cytosine-5)-methyl 53.5 11 0.00039 35.7 4.2 44 106-153 92-147 (386)
149 2cu8_A Cysteine-rich protein 2 53.5 8.2 0.00028 27.1 2.6 40 107-157 9-48 (76)
150 2l9u_A Receptor tyrosine-prote 53.5 23 0.00077 21.9 4.1 8 44-51 24-31 (40)
151 3a1b_A DNA (cytosine-5)-methyl 52.7 13 0.00045 30.9 4.0 44 105-152 77-132 (159)
152 1zbd_B Rabphilin-3A; G protein 52.0 6.8 0.00023 31.6 2.1 48 106-153 54-106 (134)
153 1x63_A Skeletal muscle LIM-pro 51.7 11 0.00038 26.7 3.1 41 107-157 15-55 (82)
154 2l3k_A Rhombotin-2, linker, LI 50.3 8.2 0.00028 30.0 2.3 37 109-155 10-46 (123)
155 2klu_A T-cell surface glycopro 49.6 18 0.00061 25.7 3.6 7 129-135 59-65 (70)
156 3kv4_A PHD finger protein 8; e 48.3 4.3 0.00015 39.4 0.4 49 108-156 5-58 (447)
157 1zfo_A LAsp-1; LIM domain, zin 46.5 9.7 0.00033 22.5 1.7 28 108-138 4-31 (31)
158 3f6q_B LIM and senescent cell 46.4 10 0.00035 25.9 2.1 42 107-158 11-52 (72)
159 1iml_A CRIP, cysteine rich int 46.3 9 0.00031 26.9 1.8 36 110-156 3-38 (76)
160 3i2d_A E3 SUMO-protein ligase 45.3 15 0.00053 34.6 3.7 47 108-157 250-300 (371)
161 1x68_A FHL5 protein; four-and- 45.3 12 0.00039 26.3 2.3 39 108-156 6-46 (76)
162 2d8y_A Eplin protein; LIM doma 44.7 25 0.00086 25.5 4.2 40 107-157 15-54 (91)
163 2o35_A Hypothetical protein DU 43.9 8.6 0.0003 29.5 1.4 12 132-143 42-53 (105)
164 3fyb_A Protein of unknown func 43.6 8.8 0.0003 29.4 1.4 12 132-143 41-52 (104)
165 1x64_A Alpha-actinin-2 associa 42.5 22 0.00076 25.7 3.5 40 106-157 24-63 (89)
166 2cor_A Pinch protein; LIM doma 41.6 25 0.00085 24.9 3.6 39 107-157 15-53 (79)
167 4fo9_A E3 SUMO-protein ligase 41.5 19 0.00066 33.8 3.7 48 108-158 216-267 (360)
168 2ysm_A Myeloid/lymphoid or mix 40.7 4 0.00014 31.5 -1.0 45 109-154 56-104 (111)
169 2l4z_A DNA endonuclease RBBP8, 39.5 13 0.00043 29.2 1.8 38 108-156 62-99 (123)
170 1nyp_A Pinch protein; LIM doma 38.6 20 0.00067 24.2 2.6 39 107-157 5-43 (66)
171 1a7i_A QCRP2 (LIM1); LIM domai 37.9 9.5 0.00033 27.1 0.8 40 107-157 7-46 (81)
172 2ehe_A Four and A half LIM dom 37.1 23 0.0008 25.0 2.9 39 108-156 16-54 (82)
173 4bbq_A Lysine-specific demethy 36.0 3.6 0.00012 31.9 -1.9 45 109-153 61-113 (117)
174 2dar_A PDZ and LIM domain prot 35.9 25 0.00085 25.4 2.9 39 107-157 25-63 (90)
175 1x4i_A Inhibitor of growth pro 35.8 12 0.00041 26.6 1.0 46 107-155 6-56 (70)
176 2d8x_A Protein pinch; LIM doma 35.4 27 0.00093 23.8 2.9 39 107-157 5-43 (70)
177 2kwj_A Zinc finger protein DPF 34.8 3.3 0.00011 32.3 -2.3 46 109-155 60-109 (114)
178 1x62_A C-terminal LIM domain p 33.9 25 0.00085 24.8 2.5 38 107-156 15-52 (79)
179 1v6g_A Actin binding LIM prote 33.7 30 0.001 24.3 3.0 38 108-157 16-53 (81)
180 2zet_C Melanophilin; complex, 33.5 24 0.00081 29.1 2.6 47 106-153 67-116 (153)
181 1x6a_A LIMK-2, LIM domain kina 32.4 27 0.00092 24.6 2.5 37 108-156 16-52 (81)
182 2jmo_A Parkin; IBR, E3 ligase, 32.4 5.1 0.00017 29.2 -1.5 19 128-148 55-73 (80)
183 2gmg_A Hypothetical protein PF 32.1 12 0.00042 28.9 0.6 25 128-157 72-96 (105)
184 2egq_A FHL1 protein; LIM domai 31.5 22 0.00074 24.8 1.9 39 108-156 16-57 (77)
185 2ct7_A Ring finger protein 31; 31.1 5.1 0.00018 29.5 -1.7 20 123-142 43-62 (86)
186 3arc_M Photosystem II reaction 30.9 64 0.0022 20.0 3.6 19 29-47 11-29 (36)
187 3mjh_B Early endosome antigen 30.2 11 0.00037 23.2 -0.0 15 107-121 5-19 (34)
188 1rut_X Flinc4, fusion protein 29.9 24 0.00083 29.4 2.2 37 109-155 71-107 (188)
189 1wd2_A Ariadne-1 protein homol 29.7 11 0.00039 25.9 0.1 36 108-143 7-46 (60)
190 2kpi_A Uncharacterized protein 28.6 29 0.00098 23.6 1.9 15 106-120 9-23 (56)
191 2cup_A Skeletal muscle LIM-pro 27.5 41 0.0014 24.6 2.9 10 109-118 7-16 (101)
192 2iyb_E Testin, TESS, TES; LIM 27.2 34 0.0012 23.0 2.2 39 108-156 3-43 (65)
193 2cur_A Skeletal muscle LIM-pro 27.0 37 0.0013 23.0 2.4 37 108-156 6-42 (69)
194 2rgt_A Fusion of LIM/homeobox 26.7 34 0.0012 27.9 2.5 38 109-156 67-104 (169)
195 2xjy_A Rhombotin-2; oncoprotei 26.6 29 0.00098 26.8 1.9 36 110-155 69-104 (131)
196 1wig_A KIAA1808 protein; LIM d 26.0 37 0.0013 23.5 2.3 37 108-156 6-42 (73)
197 2pk7_A Uncharacterized protein 24.7 18 0.00063 25.7 0.4 20 139-158 2-21 (69)
198 2d8z_A Four and A half LIM dom 23.8 41 0.0014 22.7 2.1 37 108-156 6-42 (70)
199 2dlo_A Thyroid receptor-intera 23.7 42 0.0014 23.6 2.2 38 107-156 15-52 (81)
200 1b8t_A Protein (CRP1); LIM dom 23.1 57 0.0019 27.1 3.3 40 107-157 115-154 (192)
201 2jny_A Uncharacterized BCR; st 22.1 19 0.00064 25.5 -0.0 20 139-158 4-23 (67)
202 1j2o_A FLIN2, fusion of rhombo 21.9 43 0.0015 25.4 2.1 9 110-118 6-14 (114)
203 2lat_A Dolichyl-diphosphooligo 21.8 1.2E+02 0.0042 18.8 3.7 21 23-43 7-27 (37)
204 3ggz_E Vacuolar protein-sortin 21.7 28 0.00096 20.6 0.7 10 271-280 19-28 (29)
205 2ww9_C Protein transport prote 21.2 50 0.0017 24.6 2.2 15 34-48 71-85 (87)
206 1b8t_A Protein (CRP1); LIM dom 21.0 58 0.002 27.0 2.9 40 107-157 7-46 (192)
207 1afo_A Glycophorin A; integral 20.9 1.7E+02 0.0057 18.5 4.5 12 34-45 23-34 (40)
208 2k21_A Potassium voltage-gated 20.5 1.4E+02 0.0049 23.8 4.8 21 26-46 56-76 (138)
209 2jtn_A LIM domain-binding prot 20.4 45 0.0015 27.5 2.0 46 106-157 86-131 (182)
210 1x3h_A Leupaxin; paxillin fami 20.0 59 0.002 22.6 2.4 38 108-157 16-53 (80)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.66 E-value=6.2e-17 Score=125.44 Aligned_cols=75 Identities=28% Similarity=0.680 Sum_probs=66.5
Q ss_pred hhcCCCHHHHhcCCceeeccCC--CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 82 LRAGLDPAILRKIPVVAFNQQD--FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 82 ~~~g~~~~~~~~lp~~~~~~~~--~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
...+++++.+..||.+.+.... ..++..|+||+++|..++.++.++ |+|.||..||..|+..+.+||+||..+..
T Consensus 13 ~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 13 ANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 3478999999999999987654 445678999999999999899998 99999999999999999999999998864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=4.1e-16 Score=116.15 Aligned_cols=67 Identities=34% Similarity=0.885 Sum_probs=57.7
Q ss_pred HhcCCceeeccCC-CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708 91 LRKIPVVAFNQQD-FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 91 ~~~lp~~~~~~~~-~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
+..||.+.++... ..++.+|+||+++|..++.++.++ |+|.||..||..|+..+.+||+||..+...
T Consensus 6 i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 6 SGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred HhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 4568888887654 345678999999999988889998 999999999999999999999999988754
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.54 E-value=3.1e-15 Score=104.46 Aligned_cols=52 Identities=73% Similarity=1.482 Sum_probs=47.0
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
+++.+|+||+++|..++.+..++.|+|.||..||..|+..+.+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4567899999999998888888779999999999999999999999998874
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.4e-14 Score=107.35 Aligned_cols=55 Identities=33% Similarity=0.800 Sum_probs=48.7
Q ss_pred CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCC
Q 021708 104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER 159 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 159 (309)
...+..|+||+++|..++.++.++ |+|.||..||..|+..+.+||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 345678999999999888888888 9999999999999998899999999987543
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=105.56 Aligned_cols=55 Identities=40% Similarity=0.946 Sum_probs=48.7
Q ss_pred CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCC
Q 021708 104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER 159 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 159 (309)
......|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||..+....
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 345678999999998888888898 9999999999999999999999999987643
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.50 E-value=1.5e-14 Score=108.21 Aligned_cols=56 Identities=43% Similarity=0.981 Sum_probs=49.4
Q ss_pred CCCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCC
Q 021708 103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER 159 (309)
Q Consensus 103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 159 (309)
...++.+|+||++.|...+.++.++ |+|.||..||..|+..+.+||+||..+....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 3445678999999999888888888 9999999999999999999999999987643
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.49 E-value=3.5e-14 Score=113.72 Aligned_cols=63 Identities=24% Similarity=0.590 Sum_probs=50.3
Q ss_pred CCceecccccccccCc---------------ceeecCCCCCccchhHHHHHH-----hcCCCCcccCcccccCCCCCCCC
Q 021708 106 DGLECAVCLSELEDGE---------------KARLLPKCNHGFHVECIDMWF-----QSHSTCPLCRNPVDVERSNNGNG 165 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~i~~~~~~~~~~ 165 (309)
.+.+|+||+++|.... .+++++ |+|.||..||..|+ ..+.+||+||..+....+++..+
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~g 102 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWG 102 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCCC
Confidence 3468999999997643 334676 99999999999999 45778999999998887777666
Q ss_pred CCCc
Q 021708 166 EPSV 169 (309)
Q Consensus 166 ~~~~ 169 (309)
....
T Consensus 103 ~m~~ 106 (114)
T 1v87_A 103 KMEV 106 (114)
T ss_dssp SCCC
T ss_pred eEEE
Confidence 6543
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.1e-14 Score=108.91 Aligned_cols=53 Identities=30% Similarity=0.795 Sum_probs=42.9
Q ss_pred CCceeccccccccc-----------CcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708 106 DGLECAVCLSELED-----------GEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 106 ~~~~C~ICl~~~~~-----------~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
++..|+||+++|.. ++.++.++.|+|.||.+||++||..+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 34568888888854 455666666999999999999999999999999988643
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=3.2e-13 Score=98.00 Aligned_cols=52 Identities=21% Similarity=0.586 Sum_probs=44.0
Q ss_pred CCCCceecccccccccC----cceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 104 FKDGLECAVCLSELEDG----EKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
..+...|+||++.|... ..+..++ |+|.||..||..|+..+.+||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 34567899999999763 3346776 9999999999999999999999999875
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.36 E-value=2.8e-13 Score=94.26 Aligned_cols=50 Identities=30% Similarity=0.810 Sum_probs=42.7
Q ss_pred CCceecccccccccCc-ceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 106 DGLECAVCLSELEDGE-KARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
++.+|+||+++|..++ .++.++ |+|.||..||..|+..+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4567999999996544 466776 9999999999999998899999998774
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.36 E-value=2.8e-13 Score=99.13 Aligned_cols=53 Identities=21% Similarity=0.594 Sum_probs=44.9
Q ss_pred CCCceecccccccccC----cceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708 105 KDGLECAVCLSELEDG----EKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
.++.+|+||++.|... +.+..++ |||.||..||..|+..+.+||+||..+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 4567899999998763 4456776 999999999999999999999999988744
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.33 E-value=6.4e-13 Score=106.01 Aligned_cols=51 Identities=31% Similarity=0.690 Sum_probs=42.3
Q ss_pred CCceecccccccccC--------------c-ceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 106 DGLECAVCLSELEDG--------------E-KARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~--------------~-~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
+++.|+||++.|... + .++.++ |+|.||..||+.||..+.+||+||..+..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 456799999999854 1 245566 99999999999999999999999998643
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.32 E-value=5e-13 Score=95.54 Aligned_cols=52 Identities=21% Similarity=0.587 Sum_probs=43.9
Q ss_pred CCceecccccccccC----cceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708 106 DGLECAVCLSELEDG----EKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
++.+|+||++.+... +.+..++ |||.||..||..|+..+.+||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 356899999999753 3456776 999999999999999999999999988753
No 14
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=9.4e-13 Score=96.30 Aligned_cols=50 Identities=38% Similarity=0.959 Sum_probs=43.4
Q ss_pred CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708 104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
..+...|+||++.+.. ..++ |+|.||..||..|+..+..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 3456789999999876 5676 999999999999999999999999988754
No 15
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.1e-12 Score=97.89 Aligned_cols=53 Identities=28% Similarity=0.684 Sum_probs=43.9
Q ss_pred CCCceecccccccccCcceeecCCCC-----CccchhHHHHHHhcC--CCCcccCcccccCC
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCN-----HGFHVECIDMWFQSH--STCPLCRNPVDVER 159 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR~~i~~~~ 159 (309)
.++..|.||++++..++.+ ++| |+ |.||.+||++||..+ .+||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 3456899999999877665 577 86 999999999999765 48999999987554
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.4e-12 Score=95.82 Aligned_cols=50 Identities=30% Similarity=0.563 Sum_probs=42.9
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
.++..|+||++.+.+ ...++ |+|.||..||..|+..+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 455789999999865 45667 999999999999999999999999988643
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.3e-12 Score=94.09 Aligned_cols=54 Identities=26% Similarity=0.552 Sum_probs=44.1
Q ss_pred CCCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCC
Q 021708 103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER 159 (309)
Q Consensus 103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 159 (309)
+.++...|+||++.|.+ .+.+++ |+|.||..||..|+..+..||+||..+....
T Consensus 11 ~~~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 11 ELTPYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCCGGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred hcCCCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 34456789999999875 233346 9999999999999998899999999987543
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3e-12 Score=97.35 Aligned_cols=56 Identities=23% Similarity=0.727 Sum_probs=46.6
Q ss_pred CCCCCCceecccccccccCcc-eeecCCCCCccchhHHHHHHhcC---CCCcccCcccccC
Q 021708 102 QDFKDGLECAVCLSELEDGEK-ARLLPKCNHGFHVECIDMWFQSH---STCPLCRNPVDVE 158 (309)
Q Consensus 102 ~~~~~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~i~~~ 158 (309)
+...+..+|+||++.|...+. .+.++ |||.||..||..|+..+ ..||+||..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 344566789999999987664 67787 99999999999999775 7899999987653
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.25 E-value=4e-12 Score=92.27 Aligned_cols=49 Identities=37% Similarity=0.929 Sum_probs=42.4
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
.+..|+||++.+.. .+..++ |||.||..|+..|+..+.+||+||..+..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 45689999999864 346777 99999999999999999999999998864
No 20
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.24 E-value=7.4e-13 Score=107.39 Aligned_cols=52 Identities=31% Similarity=0.663 Sum_probs=0.8
Q ss_pred CCceecccccccccC--------------cceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 106 DGLECAVCLSELEDG--------------EKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~--------------~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
+++.|+||+++|... +..+++..|+|.||..||+.||..+.+||+||..+..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 346899999999752 2223323499999999999999999999999998653
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=8.8e-12 Score=91.59 Aligned_cols=51 Identities=27% Similarity=0.734 Sum_probs=42.2
Q ss_pred CCCCceecccccccccCcceeecCCCCCccchhHHHHHHh---cCCCCcccCcccccC
Q 021708 104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ---SHSTCPLCRNPVDVE 158 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~CR~~i~~~ 158 (309)
..+...|+||++.|.+ ...++ |||.||..||..|+. .+..||+||..+...
T Consensus 17 ~~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 4456789999999875 55666 999999999999996 456899999988653
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=7.3e-12 Score=94.27 Aligned_cols=49 Identities=20% Similarity=0.560 Sum_probs=42.5
Q ss_pred CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
..+...|+||++.|.. ...++ |+|.||..||..|+.....||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3456789999999865 45677 9999999999999998899999999985
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=89.64 Aligned_cols=51 Identities=22% Similarity=0.553 Sum_probs=41.6
Q ss_pred CCCCceecccccccccCcceeecCCCCCccchhHHHHHH-hcCCCCcccCcccccC
Q 021708 104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF-QSHSTCPLCRNPVDVE 158 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~i~~~ 158 (309)
..+...|+||++.+.+. ..++ |||.||..||..|+ ..+..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCcCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 34567899999998753 3366 99999999999999 4567899999988653
No 24
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=1.7e-11 Score=91.45 Aligned_cols=51 Identities=29% Similarity=0.643 Sum_probs=42.3
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhcC--CCCcccCcccccCC
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH--STCPLCRNPVDVER 159 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~i~~~~ 159 (309)
...+|+||++.|..++... .|+|.||..||.+||+.+ .+||+||..+..+.
T Consensus 14 ~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 4568999999998765433 599999999999999887 88999998887543
No 25
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.18 E-value=1.4e-11 Score=91.27 Aligned_cols=52 Identities=29% Similarity=0.623 Sum_probs=41.9
Q ss_pred CCCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcC--CCCcccCccccc
Q 021708 103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH--STCPLCRNPVDV 157 (309)
Q Consensus 103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~i~~ 157 (309)
...+...|+||++.|.+ ...++.|||.||..||..|+..+ ..||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 11 PIPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CSCGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred cCCCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 34456789999999875 44565599999999999999765 689999997543
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.16 E-value=9.5e-12 Score=103.20 Aligned_cols=48 Identities=31% Similarity=0.860 Sum_probs=42.0
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
++..|+||++.|.+ ++.++ |||.||..||..|+..+.+||+||.++..
T Consensus 52 ~~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 34679999999875 56677 99999999999999999999999998854
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=4.8e-11 Score=89.64 Aligned_cols=51 Identities=31% Similarity=0.740 Sum_probs=42.8
Q ss_pred CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc------CCCCcccCcccccC
Q 021708 104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS------HSTCPLCRNPVDVE 158 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~i~~~ 158 (309)
..+...|+||++.|.. ...++ |+|.||..|+..|+.. ...||+||..+...
T Consensus 16 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred ccCCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 4456789999999875 44566 9999999999999976 78899999998753
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.13 E-value=3.6e-11 Score=90.35 Aligned_cols=51 Identities=33% Similarity=0.839 Sum_probs=42.6
Q ss_pred CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc------CCCCcccCcccccC
Q 021708 104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS------HSTCPLCRNPVDVE 158 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~i~~~ 158 (309)
..++..|+||++.|.. ...++ |+|.||..||..|+.. ...||+||..+...
T Consensus 16 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 16 IKEEVTCPICLELLKE---PVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCTTTSCTTTCSCCSS---CEECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CccCCCCcCCChhhCc---ceeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 4456789999999875 34677 9999999999999977 67899999988743
No 29
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.13 E-value=2.1e-11 Score=90.85 Aligned_cols=51 Identities=25% Similarity=0.675 Sum_probs=42.6
Q ss_pred CCCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc-------CCCCcccCccccc
Q 021708 103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-------HSTCPLCRNPVDV 157 (309)
Q Consensus 103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-------~~~CP~CR~~i~~ 157 (309)
...+...|+||++.|.+ .+.++ |||.||..||..|+.. ...||+||..+..
T Consensus 8 ~~~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 8 NVQEEVTCPICLELLTE---PLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCCEETTTTEECSS---CCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred hcccCCCCcCCCcccCC---eeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 34566889999999875 44567 9999999999999976 6689999998875
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.12 E-value=4.2e-11 Score=89.24 Aligned_cols=51 Identities=20% Similarity=0.559 Sum_probs=43.1
Q ss_pred CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCcccccC
Q 021708 104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDVE 158 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~ 158 (309)
..+...|+||++.|.+ ...++ |||.||..||..|+.. +.+||+||..+...
T Consensus 5 ~~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp CSSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred CcccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 4556789999999875 45567 9999999999999986 78899999988643
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=5.4e-11 Score=85.08 Aligned_cols=45 Identities=29% Similarity=0.792 Sum_probs=37.3
Q ss_pred CCCCCceecccccccccCcceeecCCCCCccchhHHHHHHh---cCCCCccc
Q 021708 103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ---SHSTCPLC 151 (309)
Q Consensus 103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~C 151 (309)
..+++..|+||++.|.+ .+.++ |||.||..||..|+. ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34566789999999875 45566 999999999999997 45689998
No 32
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.09 E-value=3.7e-11 Score=97.58 Aligned_cols=52 Identities=21% Similarity=0.605 Sum_probs=44.3
Q ss_pred CCceecccccccccC----cceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708 106 DGLECAVCLSELEDG----EKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
+...|+||++.|.+. +.++.++ |||.||..||..|+..+.+||+||..+...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 457899999999763 4446776 999999999999999999999999988643
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.09 E-value=4.2e-11 Score=93.97 Aligned_cols=49 Identities=33% Similarity=0.892 Sum_probs=41.6
Q ss_pred CCceecccccccccCcceee-cCCCCCccchhHHHHHHhcC-CCCcccCcccccC
Q 021708 106 DGLECAVCLSELEDGEKARL-LPKCNHGFHVECIDMWFQSH-STCPLCRNPVDVE 158 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~-lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~i~~~ 158 (309)
+...|+||++.|.. .+. ++ |||.||..||..|+..+ ..||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 21 EVFRCFICMEKLRD---ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCccCCccccC---ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 45689999999975 445 66 99999999999999877 6899999998653
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=8.3e-11 Score=82.35 Aligned_cols=44 Identities=32% Similarity=0.929 Sum_probs=36.2
Q ss_pred CCCCceecccccccccCcceeecCCCCCccchhHHHHHH---hcCCCCccc
Q 021708 104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF---QSHSTCPLC 151 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl---~~~~~CP~C 151 (309)
..+...|+||++.+.+. +.++ |+|.||..||..|+ ..+..||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567899999998763 4566 99999999999995 456789998
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.05 E-value=9.1e-11 Score=91.51 Aligned_cols=48 Identities=27% Similarity=0.702 Sum_probs=41.3
Q ss_pred CCceecccccccccCcceeec-CCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 106 DGLECAVCLSELEDGEKARLL-PKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~l-p~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
+...|+||++.|.+ ...+ + |||.||..||..|+..+..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI---AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC---cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 34689999999875 4444 5 99999999999999988999999998875
No 36
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.05 E-value=1.3e-10 Score=89.30 Aligned_cols=51 Identities=29% Similarity=0.646 Sum_probs=41.7
Q ss_pred CCCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc--CCCCcccCcccc
Q 021708 103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS--HSTCPLCRNPVD 156 (309)
Q Consensus 103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~i~ 156 (309)
...+...|+||++.|.+ .+.++.|||.||..||..|+.. +..||+||..+.
T Consensus 9 ~~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 44567899999999875 4456559999999999999964 358999999874
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=1.2e-10 Score=83.85 Aligned_cols=50 Identities=22% Similarity=0.606 Sum_probs=40.0
Q ss_pred Cceeccccc-ccccCcce-eecCCCCCccchhHHHHHHhc-CCCCcccCccccc
Q 021708 107 GLECAVCLS-ELEDGEKA-RLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDV 157 (309)
Q Consensus 107 ~~~C~ICl~-~~~~~~~~-~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~ 157 (309)
+..|+||++ .+...... ..++ |||.||..||..|+.. ...||+||..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 467999999 77665443 3466 9999999999999754 4679999998864
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.04 E-value=8.4e-11 Score=93.23 Aligned_cols=51 Identities=25% Similarity=0.639 Sum_probs=42.6
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
.+...|+||++.|.+ .+..++ |||.||..||..|+..+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 456789999999875 333346 999999999999999999999999988753
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.03 E-value=8.4e-11 Score=95.42 Aligned_cols=53 Identities=21% Similarity=0.594 Sum_probs=44.1
Q ss_pred CCCceecccccccccC----cceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708 105 KDGLECAVCLSELEDG----EKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
++...|+||++.|... ..+..++ |||.||..||+.|+..+.+||+||..+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 3457899999998753 3345666 999999999999999999999999998754
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.02 E-value=1.1e-10 Score=99.31 Aligned_cols=49 Identities=31% Similarity=0.693 Sum_probs=40.8
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCccccc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDV 157 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~ 157 (309)
+...|+||++.|.+ .+..++ |||.||..||..|+.. +..||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 45689999999875 344446 9999999999999987 7789999999854
No 41
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.99 E-value=3.2e-10 Score=92.05 Aligned_cols=48 Identities=23% Similarity=0.613 Sum_probs=40.6
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhcC-CCCcccCccccc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH-STCPLCRNPVDV 157 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~i~~ 157 (309)
+...|+||++.|.. ...++ |||.||..||..|+..+ ..||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 45689999999885 55677 99999999999999754 489999999865
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.95 E-value=3.7e-10 Score=89.57 Aligned_cols=48 Identities=31% Similarity=0.715 Sum_probs=40.0
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhcC---CCCcccCcccccC
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH---STCPLCRNPVDVE 158 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~i~~~ 158 (309)
...|+||++.|.. ...++ |||.||..||..|+..+ ..||+||..+...
T Consensus 21 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcC---eEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 4579999999865 34466 99999999999999765 3899999988754
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.92 E-value=3.9e-10 Score=90.88 Aligned_cols=52 Identities=27% Similarity=0.580 Sum_probs=42.7
Q ss_pred CCCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCC-CCcccCcccccC
Q 021708 103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHS-TCPLCRNPVDVE 158 (309)
Q Consensus 103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~i~~~ 158 (309)
...+...|+||++.|.. ...++ |||.||..||..|+..+. .||+||..+...
T Consensus 14 ~~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 14 PLESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcCChhhcC---eEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 34456789999999875 45576 999999999999997654 899999988753
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.90 E-value=7.2e-10 Score=93.41 Aligned_cols=49 Identities=20% Similarity=0.595 Sum_probs=41.3
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhcCC-CCcccCcccccC
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHS-TCPLCRNPVDVE 158 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~i~~~ 158 (309)
+...|+||++.|.+ ...++ |||.||..||..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45689999999875 45577 999999999999998654 899999998754
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.90 E-value=1.5e-10 Score=92.79 Aligned_cols=48 Identities=29% Similarity=0.737 Sum_probs=40.7
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCccccc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDV 157 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~ 157 (309)
++..|+||++.|.. .+.++ |||.||..||..|+.. +..||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 45689999999875 45666 9999999999999976 6789999999864
No 46
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.89 E-value=3.9e-10 Score=79.20 Aligned_cols=47 Identities=30% Similarity=0.702 Sum_probs=39.2
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
.+...|+||++.|.+ .+.++ |||.||..||..| ...||+||..+...
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 456789999999886 46677 9999999999885 56899999988754
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.88 E-value=2.7e-09 Score=80.27 Aligned_cols=55 Identities=24% Similarity=0.475 Sum_probs=42.5
Q ss_pred CCCCceecccccccccCcce-eecCCCCCccchhHHHHHHh-cCCCCcccCcccccCC
Q 021708 104 FKDGLECAVCLSELEDGEKA-RLLPKCNHGFHVECIDMWFQ-SHSTCPLCRNPVDVER 159 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~-~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~~ 159 (309)
.+++..|+||++.+...+.. ..++ |||.||..|+..|+. ....||+||..+....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 45667899999998654433 2344 999999999999984 4577999999987543
No 48
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.85 E-value=8.2e-10 Score=79.78 Aligned_cols=47 Identities=19% Similarity=0.543 Sum_probs=39.5
Q ss_pred CCceecccccccccCcceeec--CCCCCc-cchhHHHHHHhcCCCCcccCcccc
Q 021708 106 DGLECAVCLSELEDGEKARLL--PKCNHG-FHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~l--p~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
++.+|.||++.+.+ ..++ | |||. |+..|+..|...+..||+||..+.
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 44679999998654 3333 8 9999 899999999998899999999885
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.85 E-value=1.2e-09 Score=87.53 Aligned_cols=48 Identities=31% Similarity=0.591 Sum_probs=41.1
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCcccccC
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDVE 158 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~ 158 (309)
...|+||++.|.+ ...++ |||.||..||..|+.. +..||+||..+...
T Consensus 23 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 4679999999875 44576 9999999999999976 77899999998754
No 50
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.82 E-value=2.4e-09 Score=81.67 Aligned_cols=49 Identities=16% Similarity=0.128 Sum_probs=43.3
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
.+.+.|+||++.|.+ .+.++ |||.|+..||..|+..+.+||+||..+..
T Consensus 12 p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 456789999999987 66787 99999999999999988999999988764
No 51
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.82 E-value=1.7e-09 Score=103.88 Aligned_cols=48 Identities=25% Similarity=0.706 Sum_probs=41.5
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHh-cCCCCcccCcccccC
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ-SHSTCPLCRNPVDVE 158 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~ 158 (309)
..+|+||++.+.. +..+| |||.||..|+..|+. .+..||+||..+...
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3689999999854 66787 999999999999998 688999999988753
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.81 E-value=3.1e-09 Score=83.57 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=43.7
Q ss_pred CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
..+...|+||++.|.+ .+.++ |||.|+..||..|+..+.+||+||..+..
T Consensus 26 ~p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp CSTTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred CcHhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 3456789999999987 66777 99999999999999988999999998864
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.79 E-value=1.7e-09 Score=77.86 Aligned_cols=49 Identities=18% Similarity=0.408 Sum_probs=39.4
Q ss_pred CCceecccccccccCcceeecCCCCCc-cchhHHHHHHhcCCCCcccCcccc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHG-FHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
....|.||++...+. .+..+| |||+ |+..|+..|...+..||+||..|.
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 346799999986541 122347 9998 999999999988889999999885
No 54
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.79 E-value=4.2e-09 Score=82.51 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=43.1
Q ss_pred CCCceecccccccccCcceeecCCCC-CccchhHHHHHHhcCCCCcccCccccc
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCN-HGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
.+.+.|+||++.|.+ .+.++ || |.|+..||..|+..+.+||+||..+..
T Consensus 20 p~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 456789999999987 56677 99 999999999999988999999998864
No 55
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.79 E-value=1.3e-09 Score=102.54 Aligned_cols=53 Identities=26% Similarity=0.745 Sum_probs=40.6
Q ss_pred CCCceecccccccccCcce-e---ecCCCCCccchhHHHHHHhcC-----------CCCcccCccccc
Q 021708 105 KDGLECAVCLSELEDGEKA-R---LLPKCNHGFHVECIDMWFQSH-----------STCPLCRNPVDV 157 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~-~---~lp~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR~~i~~ 157 (309)
+...+|+||++.+.++..+ . ..++|+|.||..||.+||+.. .+||+||.+|..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3456899999999873322 1 123599999999999999652 469999998864
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.77 E-value=1.7e-09 Score=90.26 Aligned_cols=50 Identities=18% Similarity=0.410 Sum_probs=41.5
Q ss_pred CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcCC-CCcccCccccc
Q 021708 104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHS-TCPLCRNPVDV 157 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~i~~ 157 (309)
.++...|+||++.|.+ ...++ |||.||..||..|+.... .||+||.++..
T Consensus 28 l~~~~~C~IC~~~~~~---pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 28 LEAKYLCSACRNVLRR---PFQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CCcCcCCCCCChhhcC---cEECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 3456789999999876 34566 999999999999997654 89999998754
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.71 E-value=4.3e-09 Score=84.61 Aligned_cols=46 Identities=28% Similarity=0.678 Sum_probs=39.0
Q ss_pred CCceecccccccccCcceeec-CCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 106 DGLECAVCLSELEDGEKARLL-PKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~l-p~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
+...|+||++.|.. ...+ + |||.||..||..|+. ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 45689999999875 4455 6 999999999999998 789999999853
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.71 E-value=2.7e-09 Score=79.09 Aligned_cols=44 Identities=20% Similarity=0.631 Sum_probs=37.5
Q ss_pred CCceecccccccccCcceeecCCCCCc-cchhHHHHHHhcCCCCcccCccccc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHG-FHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
++..|.||++.+.+ +..+| |||. ||..|+..| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 34679999999765 66777 9999 999999999 789999998764
No 59
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.61 E-value=3.5e-08 Score=70.45 Aligned_cols=48 Identities=25% Similarity=0.713 Sum_probs=36.9
Q ss_pred CCCceecccccccccCcceeecCCCC--C---ccchhHHHHHHhc--CCCCcccCcccc
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCN--H---GFHVECIDMWFQS--HSTCPLCRNPVD 156 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~--H---~FH~~Ci~~Wl~~--~~~CP~CR~~i~ 156 (309)
++...|.||+++. ++.+ ++| |. | .||..||+.|+.. +.+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3456899999983 3333 566 65 4 8999999999954 678999998775
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.59 E-value=1.7e-08 Score=86.02 Aligned_cols=52 Identities=27% Similarity=0.576 Sum_probs=42.7
Q ss_pred CCCCCceecccccccccCcceeecCCCCCccchhHHHHHHhcC-CCCcccCcccccC
Q 021708 103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH-STCPLCRNPVDVE 158 (309)
Q Consensus 103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~i~~~ 158 (309)
...+...|+||++.|.+ .+.++ |||.||..||..|+... ..||+||..+...
T Consensus 14 ~~~~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 14 PLESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCChhhcC---cEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 34566789999999876 45576 99999999999999664 4899999988653
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.59 E-value=2.4e-08 Score=77.32 Aligned_cols=49 Identities=20% Similarity=0.546 Sum_probs=39.4
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHHHhcC------CCCcc--cCcc-cc
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH------STCPL--CRNP-VD 156 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~------~~CP~--CR~~-i~ 156 (309)
...+.|+||++.|.+ .+.++.|||.|+..||..|+..+ .+||+ |+.. +.
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 456789999999986 55564599999999999999653 58999 9866 44
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=4.7e-08 Score=71.35 Aligned_cols=45 Identities=31% Similarity=0.767 Sum_probs=37.6
Q ss_pred CCceecccccccccCcceeecCCCCCc-cchhHHHHHHhcCCCCcccCcccccC
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHG-FHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
+...|.||++...+ +.++| |+|+ |+..|+.. ...||+||..|...
T Consensus 14 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 45689999998654 77888 9999 99999984 47899999988753
No 63
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.55 E-value=3.5e-08 Score=89.50 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=42.0
Q ss_pred CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCccccc
Q 021708 104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDV 157 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~ 157 (309)
..+...|+||++.|.+ .+.++ |||.||..||..|+.. +.+||+||.++..
T Consensus 205 ~~~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 3456789999999986 66787 9999999999999975 4559999998864
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=4.9e-08 Score=72.30 Aligned_cols=43 Identities=21% Similarity=0.629 Sum_probs=35.7
Q ss_pred CceecccccccccCcceeecCCCCCc-cchhHHHHHHhcCCCCcccCccccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHG-FHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
...|.||++.+.+ +..+| |||. ||..|+.. ...||+||..+..
T Consensus 25 ~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 4579999999765 56677 9999 99999965 3789999998864
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.45 E-value=6.2e-08 Score=74.72 Aligned_cols=48 Identities=21% Similarity=0.556 Sum_probs=39.6
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhc--------CCCCcc--cCcc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS--------HSTCPL--CRNP 154 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~--CR~~ 154 (309)
+..+|.||++++...+.+.+.+ |+|.||..|+..|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3467999999998776666666 9999999999999953 236999 9987
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.41 E-value=1.3e-07 Score=81.84 Aligned_cols=51 Identities=16% Similarity=0.267 Sum_probs=42.6
Q ss_pred CCCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc-CCCCcccCccccc
Q 021708 103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-HSTCPLCRNPVDV 157 (309)
Q Consensus 103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~ 157 (309)
...+.+.|+||++.|.+ ++.++ |||.|+..||..|+.. +.+||+|+.++..
T Consensus 102 ~ip~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 102 EIPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCcHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 44566789999999986 66677 9999999999999976 3579999988764
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.38 E-value=9.4e-08 Score=71.77 Aligned_cols=44 Identities=30% Similarity=0.734 Sum_probs=37.1
Q ss_pred CceecccccccccCcceeecCCCCCc-cchhHHHHHHhcCCCCcccCcccccC
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHG-FHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
+..|.||++.+.+ +..+| |||. |+..|+..| ..||+||..+...
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 4579999998764 67788 9999 999999987 3899999988753
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.23 E-value=2e-07 Score=88.47 Aligned_cols=44 Identities=27% Similarity=0.718 Sum_probs=37.9
Q ss_pred CCceecccccccccCcceeecCCCCCc-cchhHHHHHHhcCCCCcccCccccc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHG-FHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
++..|+||++.+.. +..+| |||. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 45689999999865 66778 9999 999999998 689999998864
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.18 E-value=5.8e-07 Score=64.22 Aligned_cols=48 Identities=19% Similarity=0.387 Sum_probs=40.6
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
..|+||++.|.+ ...++.|||.|...||.+||..+.+||+++.++...
T Consensus 4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 579999999985 445523999999999999998888999999888654
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.09 E-value=1.3e-06 Score=79.52 Aligned_cols=49 Identities=27% Similarity=0.496 Sum_probs=39.1
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhcC--CCCcc--cCccccc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSH--STCPL--CRNPVDV 157 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~--CR~~i~~ 157 (309)
....|+||++.|.+ .++... |||.|+..||..|+..+ ..||+ |+..+..
T Consensus 180 ~el~CPIcl~~f~D--PVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEA--PLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSS--EEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccC--CeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 34579999999975 344444 99999999999999764 46999 9997754
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.03 E-value=5.1e-06 Score=74.94 Aligned_cols=50 Identities=30% Similarity=0.628 Sum_probs=40.9
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhcCC--CCcccCcccccCC
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHS--TCPLCRNPVDVER 159 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~--~CP~CR~~i~~~~ 159 (309)
..+|.||.+-+..+ ..++.|+|.||..|+..|++.+. .||.|+..+....
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 56899999998865 34556999999999999997654 8999999876543
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.87 E-value=7.5e-06 Score=63.78 Aligned_cols=46 Identities=28% Similarity=0.694 Sum_probs=38.1
Q ss_pred eecccccccccCcceeecCCCCCccchhHHHHHHh-cCCCCcccCccccc
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ-SHSTCPLCRNPVDV 157 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~ 157 (309)
.|.+|--.+. ...|+.| |+|+|+.+|+..|.+ ..++||.|+..|..
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4888877765 3568898 999999999999985 46789999998864
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.09 E-value=0.018 Score=41.30 Aligned_cols=46 Identities=26% Similarity=0.431 Sum_probs=34.6
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCccc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRNPV 155 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~i 155 (309)
.+..|.||.+. ..+...-.|...||..|++..|.. .-.||.|....
T Consensus 11 ~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 45679999753 345566679999999999998854 34699997543
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.85 E-value=0.061 Score=41.21 Aligned_cols=49 Identities=20% Similarity=0.495 Sum_probs=38.8
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccCC
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER 159 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~ 159 (309)
.-..|-.|+-+... ++.. ..|.+|..|+...|.....||+|..++....
T Consensus 27 G~~nCKsCWf~~k~---LV~C--~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 27 GPQFCKSCWFENKG---LVEC--NNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp CCCCCCSSCSCCSS---EEEC--SSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred CcccChhhccccCC---eeee--cchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 34579999987543 4332 4499999999999999999999999987654
No 75
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=92.69 E-value=0.034 Score=39.23 Aligned_cols=49 Identities=22% Similarity=0.441 Sum_probs=36.4
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHHHh-----cCCCCcccCc
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ-----SHSTCPLCRN 153 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~ 153 (309)
++...|.||...+.++...+..-.|..-||..|+..-.. ....||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 345679999998865555556656888999999875432 4577999975
No 76
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=92.27 E-value=0.079 Score=37.20 Aligned_cols=47 Identities=23% Similarity=0.589 Sum_probs=34.1
Q ss_pred CCCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCc
Q 021708 103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRN 153 (309)
Q Consensus 103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 153 (309)
+..++..|.||... ..+...-.|...||..|+..-+.. .-.||.|+.
T Consensus 7 ~~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred cCCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34456789999873 345566568899999999986532 456999964
No 77
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=91.66 E-value=0.071 Score=38.79 Aligned_cols=52 Identities=19% Similarity=0.419 Sum_probs=37.2
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHHHh----cCCCCcccCccccc
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ----SHSTCPLCRNPVDV 157 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~----~~~~CP~CR~~i~~ 157 (309)
.+...|.||..... ++.++..-.|...||..|+..-+. ....||.|+..+..
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 34456999987753 445556666889999999987653 25679999876543
No 78
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=91.35 E-value=0.071 Score=45.85 Aligned_cols=48 Identities=21% Similarity=0.415 Sum_probs=36.2
Q ss_pred ceecccccccccCcc---eeecCCCCCccchhHHHHH------Hh-----cCCCCcccCccc
Q 021708 108 LECAVCLSELEDGEK---ARLLPKCNHGFHVECIDMW------FQ-----SHSTCPLCRNPV 155 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~---~~~lp~C~H~FH~~Ci~~W------l~-----~~~~CP~CR~~i 155 (309)
..|+||...+.+++. .+.+-.|..-||..|+..- +. ....||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 469999999988763 6666679999999998532 11 268999998653
No 79
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.24 E-value=0.1 Score=39.71 Aligned_cols=34 Identities=15% Similarity=0.417 Sum_probs=24.3
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHH
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMW 141 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 141 (309)
+..|.||++++.......=+. |+|.|+..|+..|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 467999998753322222254 9999999999983
No 80
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=90.46 E-value=0.33 Score=36.42 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=24.2
Q ss_pred CCCCceecccccccccCcceeecCCCCCccchhHHHHH
Q 021708 104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMW 141 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 141 (309)
...+..|.||-.- . .+.+.-..-|+-+||..|+.+-
T Consensus 12 ~~~D~~C~VC~~~-t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVW-T-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCC-C-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCccccc-c-ccceeccccccccccHhhcccc
Confidence 3466789999743 1 2222223339999999999996
No 81
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=89.45 E-value=0.091 Score=45.72 Aligned_cols=46 Identities=28% Similarity=0.489 Sum_probs=34.3
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCcc
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRNP 154 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 154 (309)
.++..|.+|... ..+..+-.|...||..|+.+.+.. ...||.|+..
T Consensus 5 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 345679999854 336666679999999999887743 3569999854
No 82
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=88.75 E-value=0.15 Score=35.72 Aligned_cols=47 Identities=21% Similarity=0.525 Sum_probs=32.8
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCccc
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRNPV 155 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~i 155 (309)
.++..|.||.+. ..+...-.|...||..|+..-|.. .-.||.|+...
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 345679999863 334455568899999999965533 34699997543
No 83
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=88.26 E-value=0.12 Score=44.06 Aligned_cols=46 Identities=30% Similarity=0.569 Sum_probs=33.8
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCccc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRNPV 155 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~i 155 (309)
++..|.+|.+. ++ +..+-.|...||..|+.+-+.. ...||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45679999854 33 5566668899999999887744 35699998543
No 84
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.22 E-value=0.58 Score=34.30 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=33.9
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHH-----hcCCCCcccCccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF-----QSHSTCPLCRNPV 155 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~i 155 (309)
...| ||...+..+...+..-.|..-||..|+.--. .....||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3456 9998876455555666699899999996432 1356799998654
No 85
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=86.97 E-value=0.08 Score=41.37 Aligned_cols=48 Identities=33% Similarity=0.623 Sum_probs=35.3
Q ss_pred ceecccccccccCcceeecC-CCCCccchhHHHHHH----------hcCCCCcccCccc
Q 021708 108 LECAVCLSELEDGEKARLLP-KCNHGFHVECIDMWF----------QSHSTCPLCRNPV 155 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~Wl----------~~~~~CP~CR~~i 155 (309)
..|.||...+.++...+..- .|..-||..|+.-=- .....||.|+..-
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 46999999987666666664 588899999986332 1456799998653
No 86
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=86.81 E-value=0.14 Score=36.19 Aligned_cols=51 Identities=20% Similarity=0.460 Sum_probs=35.9
Q ss_pred CCCceecccccccc-cCcceeecCCCCCccchhHHHHHHh-------cCCCCcccCccc
Q 021708 105 KDGLECAVCLSELE-DGEKARLLPKCNHGFHVECIDMWFQ-------SHSTCPLCRNPV 155 (309)
Q Consensus 105 ~~~~~C~ICl~~~~-~~~~~~~lp~C~H~FH~~Ci~~Wl~-------~~~~CP~CR~~i 155 (309)
.++..|.||..... .+..+.....|...||..|+..-+. ..-.|+.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 34567999998643 3345666667999999999986442 345699996543
No 87
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=86.72 E-value=0.21 Score=37.64 Aligned_cols=52 Identities=17% Similarity=0.489 Sum_probs=36.4
Q ss_pred CCCceeccccccc-ccCcceeecCCCCCccchhHHHHHH--hcCCCCcccCcccc
Q 021708 105 KDGLECAVCLSEL-EDGEKARLLPKCNHGFHVECIDMWF--QSHSTCPLCRNPVD 156 (309)
Q Consensus 105 ~~~~~C~ICl~~~-~~~~~~~~lp~C~H~FH~~Ci~~Wl--~~~~~CP~CR~~i~ 156 (309)
+++..|.||...- ...+.+...-.|.-.||..|+..-+ .....||.|.....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 4567899999753 2334566666788999999998644 22456999976543
No 88
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=86.61 E-value=0.22 Score=33.67 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=31.1
Q ss_pred ecccccccccCcceeecC-CCCCccchhHHHHHH----hcCCCCcccC
Q 021708 110 CAVCLSELEDGEKARLLP-KCNHGFHVECIDMWF----QSHSTCPLCR 152 (309)
Q Consensus 110 C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~Wl----~~~~~CP~CR 152 (309)
|.+|...+.+++..+..- .|..-||..|+..-. .....||.|+
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 778988886666566655 588889999986432 3567899985
No 89
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=86.54 E-value=0.11 Score=37.63 Aligned_cols=48 Identities=25% Similarity=0.432 Sum_probs=34.1
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHH----hcCCCCcccCcc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF----QSHSTCPLCRNP 154 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl----~~~~~CP~CR~~ 154 (309)
....| ||......++..+..-.|..-||..|+..-- .....||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 34568 7988766565566666798899999987542 335679999753
No 90
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.48 E-value=0.094 Score=36.03 Aligned_cols=46 Identities=24% Similarity=0.635 Sum_probs=32.1
Q ss_pred CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCc
Q 021708 104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRN 153 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 153 (309)
..++..|.||... + .+...-.|...||..|+..-|.. .-.||.|..
T Consensus 6 ~~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3455679999974 3 35555568999999999865533 335888853
No 91
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.44 E-value=0.17 Score=38.13 Aligned_cols=50 Identities=22% Similarity=0.484 Sum_probs=36.6
Q ss_pred Cceeccccccccc-CcceeecCCCCCccchhHHHHHHh--------cCCCCcccCcccc
Q 021708 107 GLECAVCLSELED-GEKARLLPKCNHGFHVECIDMWFQ--------SHSTCPLCRNPVD 156 (309)
Q Consensus 107 ~~~C~ICl~~~~~-~~~~~~lp~C~H~FH~~Ci~~Wl~--------~~~~CP~CR~~i~ 156 (309)
+..|.||...-.. +..+.+.-.|...||..|+..-|. ....|+.|+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4579999976332 345667777999999999987653 2456999976554
No 92
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=85.03 E-value=0.19 Score=42.27 Aligned_cols=48 Identities=19% Similarity=0.540 Sum_probs=34.8
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHH-----hcCCCCcccCcc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF-----QSHSTCPLCRNP 154 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~ 154 (309)
+...| +|......+...+.+-.|...||..|+..-. .....||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45678 9998876555566666799999999996322 236679999864
No 93
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=84.08 E-value=0.35 Score=35.03 Aligned_cols=49 Identities=18% Similarity=0.532 Sum_probs=34.4
Q ss_pred CCCceeccccccc-ccCcceeecCCCCCccchhHHHHHH--hcCCCCcccCc
Q 021708 105 KDGLECAVCLSEL-EDGEKARLLPKCNHGFHVECIDMWF--QSHSTCPLCRN 153 (309)
Q Consensus 105 ~~~~~C~ICl~~~-~~~~~~~~lp~C~H~FH~~Ci~~Wl--~~~~~CP~CR~ 153 (309)
.++..|.||...- .+++.+...-.|.-.||..|+..-. ...-.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3456799998763 3445666666799999999998643 22446888864
No 94
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=83.56 E-value=0.68 Score=32.85 Aligned_cols=47 Identities=28% Similarity=0.540 Sum_probs=33.7
Q ss_pred CCceecccccccccCcceeecC-CCCCccchhHHHHHHh----------cCCCCcccC
Q 021708 106 DGLECAVCLSELEDGEKARLLP-KCNHGFHVECIDMWFQ----------SHSTCPLCR 152 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~Wl~----------~~~~CP~CR 152 (309)
....|.+|...+..++..+..- .|.--||..|+.-=-. ....||.|.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 3457999999988777777776 6999999999853321 145688875
No 95
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=83.03 E-value=1.3 Score=36.48 Aligned_cols=46 Identities=20% Similarity=0.374 Sum_probs=33.1
Q ss_pred CCCCceecccccccccCcceeecCCCCCccchhHHHHHHh-----------cCCCCcccCc
Q 021708 104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ-----------SHSTCPLCRN 153 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----------~~~~CP~CR~ 153 (309)
..++..|.+|.+- ++ +...-.|-..||..||..-+. ....||+|+.
T Consensus 60 Dg~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3456789999965 33 445556889999999997652 2456999973
No 96
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=82.93 E-value=0.37 Score=34.15 Aligned_cols=45 Identities=29% Similarity=0.619 Sum_probs=32.5
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCc
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRN 153 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 153 (309)
.++..|.||.+. + .+...-.|...||..|+..-|.. .-.||.|..
T Consensus 6 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 355679999864 3 35555568899999999865533 445999964
No 97
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=82.56 E-value=0.5 Score=34.31 Aligned_cols=46 Identities=22% Similarity=0.498 Sum_probs=32.0
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHH---------hcCCCCcccCccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF---------QSHSTCPLCRNPV 155 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl---------~~~~~CP~CR~~i 155 (309)
..| ||...... ...+..-.|..-||..|+..-. .....||.|+..-
T Consensus 17 ~~C-~C~~~~~~-~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 17 LYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CEE-ECCCccCC-CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 457 89888653 3445555699999999985322 2478899997543
No 98
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=82.39 E-value=1 Score=34.02 Aligned_cols=46 Identities=26% Similarity=0.591 Sum_probs=33.5
Q ss_pred CCCceecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCcc
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRNP 154 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 154 (309)
.++..|.+|... + .+.....|.-.||..|+++=|.. ...||.|+..
T Consensus 23 ~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 445689999964 3 35556568889999999876643 4469999753
No 99
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.49 E-value=1.1 Score=33.97 Aligned_cols=47 Identities=23% Similarity=0.518 Sum_probs=29.1
Q ss_pred CCceecccccccccCcceeecCC--CC-CccchhHHHHHH--hcCCCCcccCccc
Q 021708 106 DGLECAVCLSELEDGEKARLLPK--CN-HGFHVECIDMWF--QSHSTCPLCRNPV 155 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~Ci~~Wl--~~~~~CP~CR~~i 155 (309)
+...| ||..... ++ ++..-. |. ..||..|+..-- ..+..||.|+..-
T Consensus 35 e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 34557 9988643 33 334444 55 579999998211 1256799997543
No 100
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=81.04 E-value=0.77 Score=30.53 Aligned_cols=44 Identities=32% Similarity=0.705 Sum_probs=30.4
Q ss_pred eecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCc
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRN 153 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 153 (309)
.|.||...-. ++.+...-.|...||..|++.=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGE-DDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSC-CSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCC-CCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4889987633 3345556569999999999765533 345999964
No 101
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=81.01 E-value=0.18 Score=35.06 Aligned_cols=47 Identities=23% Similarity=0.631 Sum_probs=33.3
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCcccc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRNPVD 156 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~i~ 156 (309)
++..|.||... + .+...-.|...||..|+..-+.. .-.||.|.....
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 35679999874 3 45555569999999999965533 345999976543
No 102
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=80.58 E-value=1.7 Score=35.09 Aligned_cols=47 Identities=17% Similarity=0.328 Sum_probs=32.6
Q ss_pred CCCCCceecccccccccCcceeecCCCCCccchhHHHHHH-----------hcCCCCcccCc
Q 021708 103 DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF-----------QSHSTCPLCRN 153 (309)
Q Consensus 103 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-----------~~~~~CP~CR~ 153 (309)
+..++..|.||.+- -.+...-.|-..||..||..-+ ...-.|++|+.
T Consensus 53 ~Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 53 SDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TTSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34455679999964 3344555688999999999753 12356999964
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=80.37 E-value=0.5 Score=37.01 Aligned_cols=45 Identities=27% Similarity=0.710 Sum_probs=32.2
Q ss_pred eecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCc
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRN 153 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 153 (309)
.|.||...-.+.+.+...-.|...||..|+++-|.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 588888653333456666669999999999876643 346999974
No 104
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=79.98 E-value=0.41 Score=34.28 Aligned_cols=46 Identities=20% Similarity=0.534 Sum_probs=31.9
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHh---cCCCCcccCc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ---SHSTCPLCRN 153 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~CR~ 153 (309)
+...| ||..... ++..+..-.|..-||..|+..--. ....||.|+.
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 44568 9988765 444555656989999999875332 3567988864
No 105
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=79.08 E-value=4 Score=30.79 Aligned_cols=54 Identities=19% Similarity=0.414 Sum_probs=38.5
Q ss_pred Cceeccccccccc---CcceeecCCCCCccchhHHHHHH-hcCCCCcccCcccccCCC
Q 021708 107 GLECAVCLSELED---GEKARLLPKCNHGFHVECIDMWF-QSHSTCPLCRNPVDVERS 160 (309)
Q Consensus 107 ~~~C~ICl~~~~~---~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~i~~~~~ 160 (309)
...|.||-+++-. ++.......|+--.|..|++-=. ..+..||-|+..+...++
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kg 73 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRG 73 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTT
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccC
Confidence 4579999999643 33333333466778999998665 457789999999976544
No 106
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=78.68 E-value=1.7 Score=31.27 Aligned_cols=45 Identities=24% Similarity=0.566 Sum_probs=29.1
Q ss_pred CCceecccccccccCcceeecCC--CC-CccchhHHHHHHh----cCCCCcccCccc
Q 021708 106 DGLECAVCLSELEDGEKARLLPK--CN-HGFHVECIDMWFQ----SHSTCPLCRNPV 155 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~Ci~~Wl~----~~~~CP~CR~~i 155 (309)
+...| ||..... ++ ++..-. |. ..||..|+. |. ....||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34567 8988643 33 444444 55 689999998 42 245699997543
No 107
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=78.41 E-value=2.7 Score=32.65 Aligned_cols=47 Identities=19% Similarity=0.398 Sum_probs=31.8
Q ss_pred CCceeccccccc-----ccCcceeecCCCCCccchhHHHHH------H-hcCCCCcccC
Q 021708 106 DGLECAVCLSEL-----EDGEKARLLPKCNHGFHVECIDMW------F-QSHSTCPLCR 152 (309)
Q Consensus 106 ~~~~C~ICl~~~-----~~~~~~~~lp~C~H~FH~~Ci~~W------l-~~~~~CP~CR 152 (309)
....|.+|+..= ..++.+.....|+..||..||..+ + ...-.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 345799998752 223456666679999999999632 2 3355688775
No 108
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=77.87 E-value=0.64 Score=39.85 Aligned_cols=44 Identities=27% Similarity=0.610 Sum_probs=31.3
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCcc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRNP 154 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 154 (309)
+..|.+|... + .+..+-.|...||..|+.+=+.. ...||.|+..
T Consensus 2 ~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---S-SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---C-ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3569999854 3 34455568899999999865533 3469999754
No 109
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=77.38 E-value=0.76 Score=35.19 Aligned_cols=44 Identities=25% Similarity=0.521 Sum_probs=31.0
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHh---cCCCCcccCc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ---SHSTCPLCRN 153 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~CR~ 153 (309)
..| ||......+ .++..-.|...||..|+..=+. ....||.|+.
T Consensus 29 vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 898765544 4556667999999999976432 2467999973
No 110
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=77.22 E-value=0.75 Score=35.74 Aligned_cols=46 Identities=28% Similarity=0.611 Sum_probs=31.9
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccC
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCR 152 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR 152 (309)
++..|.||.+.=.. +.+.....|...||..|+...+.. ...||.|+
T Consensus 6 ~~~~C~~C~~~g~~-~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDL-LDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCT-TTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCC-cCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 55689999876322 223455569999999999988742 34577775
No 111
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=76.33 E-value=1 Score=32.88 Aligned_cols=48 Identities=25% Similarity=0.433 Sum_probs=32.1
Q ss_pred CCceecccccccccCcceeecC--CCCCccchhHHHHHH---------hcCCCCcccCccc
Q 021708 106 DGLECAVCLSELEDGEKARLLP--KCNHGFHVECIDMWF---------QSHSTCPLCRNPV 155 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~Ci~~Wl---------~~~~~CP~CR~~i 155 (309)
+...| ||......+ ..+..- .|..-||..|+.--- ..+..||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 34567 898874444 344444 599999999996432 2367799997643
No 112
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.38 E-value=0.46 Score=36.07 Aligned_cols=50 Identities=26% Similarity=0.525 Sum_probs=35.1
Q ss_pred CCCCceecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCcc
Q 021708 104 FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRNP 154 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 154 (309)
..++..|.||...-. .+.+...-.|...||..|+.+=|.. .-.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 345567999997643 2345566679999999999854432 4459999764
No 113
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=72.73 E-value=3.1 Score=30.85 Aligned_cols=38 Identities=26% Similarity=0.461 Sum_probs=28.0
Q ss_pred CCceecccccccccCcceeecCC-CCCccchhHHHHHHhc
Q 021708 106 DGLECAVCLSELEDGEKARLLPK-CNHGFHVECIDMWFQS 144 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~-C~H~FH~~Ci~~Wl~~ 144 (309)
..+.|.+|.+.+++.- .+.+|- =.|.||..|-...++.
T Consensus 14 a~l~CtlC~erLEdtH-FVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTH-FVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTT-SEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCc-eeeCCCccCCeeeccccHHHHHh
Confidence 3467999999988643 334432 3499999999999965
No 114
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=72.57 E-value=1.1 Score=35.18 Aligned_cols=45 Identities=20% Similarity=0.446 Sum_probs=30.4
Q ss_pred ceecccccccc------cCcceeecCCCCCccchhHHHHHH-------hcCCCCcccC
Q 021708 108 LECAVCLSELE------DGEKARLLPKCNHGFHVECIDMWF-------QSHSTCPLCR 152 (309)
Q Consensus 108 ~~C~ICl~~~~------~~~~~~~lp~C~H~FH~~Ci~~Wl-------~~~~~CP~CR 152 (309)
..|.||+..-. .++.++....|+..||..|+..++ ...-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 46999987642 123555655699999999998653 2245677774
No 115
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=70.35 E-value=3.3 Score=43.87 Aligned_cols=51 Identities=24% Similarity=0.351 Sum_probs=42.6
Q ss_pred CCCCceecccccccccCcceeecCCCC-CccchhHHHHHHhcCCCCcccCcccccC
Q 021708 104 FKDGLECAVCLSELEDGEKARLLPKCN-HGFHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~~~lp~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
.-+...|+|-++-|.+ .+++| .| +.|-+.+|..||..+.+||.=|.++...
T Consensus 888 iP~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp SCGGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CcHHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 3455789999999987 66787 77 5799999999999999999999888743
No 116
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=70.20 E-value=3.6 Score=32.01 Aligned_cols=49 Identities=16% Similarity=0.389 Sum_probs=32.5
Q ss_pred CCCCceecccccccccCcceeecC--CCCCccchhHHHHHHhc----CCCCcccCcccccC
Q 021708 104 FKDGLECAVCLSELEDGEKARLLP--KCNHGFHVECIDMWFQS----HSTCPLCRNPVDVE 158 (309)
Q Consensus 104 ~~~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~i~~~ 158 (309)
..++..|.+|.+. + .++..- .|...||..|+. |.. .-.||.|...+-..
T Consensus 12 ~~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 12 QMHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp CSSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 3456679999842 3 344443 388999999998 533 34599887666543
No 117
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=69.93 E-value=3.7 Score=28.58 Aligned_cols=42 Identities=33% Similarity=0.735 Sum_probs=31.2
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHH-hcCCCCccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF-QSHSTCPLC 151 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~C 151 (309)
..|--|...|.+. .....++|++.|+.+| |..+ +.-.+||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 4699999998642 2345788999999999 5555 445679988
No 118
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=69.26 E-value=1.8 Score=31.30 Aligned_cols=47 Identities=19% Similarity=0.334 Sum_probs=32.9
Q ss_pred eecccccccccCcceeecCCCCCccchhHHHHHHh-----cCCCCcccCccc
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ-----SHSTCPLCRNPV 155 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~i 155 (309)
...||...+..+...+..-.|.--||..|+.---. ....||.|+...
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 34489887654555566666898999999964432 357799997643
No 119
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=66.23 E-value=0.64 Score=33.07 Aligned_cols=44 Identities=23% Similarity=0.502 Sum_probs=27.7
Q ss_pred ceecccccccccCcceeecC--CCCCccchhHHHHHH--------hcCCCCcccCc
Q 021708 108 LECAVCLSELEDGEKARLLP--KCNHGFHVECIDMWF--------QSHSTCPLCRN 153 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~Ci~~Wl--------~~~~~CP~CR~ 153 (309)
..| ||......+..| ..- +|..-||..|+.--- -.+..||.||.
T Consensus 11 v~C-~C~~~~~~g~mI-~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMI-QCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEE-ECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEE-EECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 457 897765555433 332 488889999984211 12467999974
No 120
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=65.75 E-value=4.2 Score=29.13 Aligned_cols=35 Identities=14% Similarity=0.205 Sum_probs=25.5
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHH
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMW 141 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 141 (309)
+..|.+|...|..-..--....||++|+..|....
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 35799999998754333344469999999997543
No 121
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=65.73 E-value=1.8 Score=30.94 Aligned_cols=44 Identities=34% Similarity=0.765 Sum_probs=28.9
Q ss_pred eecccccccccCcceeecCCCCCccchhHHHHHHhc-----CCCCcccCc
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-----HSTCPLCRN 153 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 153 (309)
.|.||...- ++..+...-.|...||..|+++=|.. .-.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 356776542 23445566568899999999965532 346999864
No 122
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=65.66 E-value=0.86 Score=36.38 Aligned_cols=48 Identities=17% Similarity=0.418 Sum_probs=33.0
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV 155 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i 155 (309)
..|..|...|..-..--....||.+||..|....+.....|-.|...+
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 579999999975433334556999999999887766566788886543
No 123
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=65.42 E-value=1.6 Score=30.29 Aligned_cols=43 Identities=23% Similarity=0.585 Sum_probs=27.3
Q ss_pred CCceecccccccccCcceeecCC--CC-CccchhHHHHHHh----cCCCCcccCc
Q 021708 106 DGLECAVCLSELEDGEKARLLPK--CN-HGFHVECIDMWFQ----SHSTCPLCRN 153 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~Ci~~Wl~----~~~~CP~CR~ 153 (309)
+...| ||..... + .++..-. |. ..||..|+. |. ....||.|+.
T Consensus 9 e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34456 8988632 3 3444444 44 679999998 43 2456998864
No 124
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=64.76 E-value=1.7 Score=30.04 Aligned_cols=43 Identities=26% Similarity=0.601 Sum_probs=28.0
Q ss_pred CCceecccccccccCcceeecCC--CC-CccchhHHHHHHhc----CCCCcccCc
Q 021708 106 DGLECAVCLSELEDGEKARLLPK--CN-HGFHVECIDMWFQS----HSTCPLCRN 153 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~ 153 (309)
+...| ||..... + ..+..-. |. .-||..|+. |.. ...||.|+.
T Consensus 8 e~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34557 9988642 3 3445445 65 689999998 422 456999864
No 125
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=64.41 E-value=4.5 Score=29.66 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=26.0
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHH
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMW 141 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 141 (309)
...|.+|...|..-..--....||++|+..|....
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 35799999999854433345569999999997654
No 126
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=64.17 E-value=3.6 Score=30.77 Aligned_cols=36 Identities=14% Similarity=0.276 Sum_probs=27.1
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHH
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF 142 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl 142 (309)
...|.+|...|..-..-.....||++|+..|...++
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 357999999997544334455699999999987764
No 127
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.87 E-value=6.6 Score=27.16 Aligned_cols=41 Identities=20% Similarity=0.515 Sum_probs=30.0
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
...|.-|-..+...+.+... -+..||.+| ..|-.|...|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEY--GGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECS--TTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEEE--CccccCccc--------CeECCCCCcCCC
Confidence 35799999998865444332 678899888 578899887753
No 128
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=63.59 E-value=4.9 Score=29.60 Aligned_cols=35 Identities=11% Similarity=0.216 Sum_probs=26.4
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHH
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMW 141 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 141 (309)
...|.+|...|..-..--....||++|+..|....
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 45799999999764433344569999999997765
No 129
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=63.47 E-value=3.6 Score=32.76 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=25.4
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHH
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMW 141 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 141 (309)
..|.+|...|..-..--....||++||..|....
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 5799999999754333345569999999996654
No 130
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=62.95 E-value=3.3 Score=35.94 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=27.4
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHH
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF 142 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl 142 (309)
++..|.+|...|..-..-..+..||++||..|.....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~ 196 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQC 196 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCee
Confidence 4578999999997544334455699999999976543
No 131
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=62.80 E-value=1.9 Score=38.08 Aligned_cols=44 Identities=34% Similarity=0.765 Sum_probs=26.6
Q ss_pred eecccccccccCcceeecCCCCCccchhHHHHHHhc-----CCCCcccCc
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-----HSTCPLCRN 153 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 153 (309)
.|.+|...- .+..+..+-.|...||..|+++=|.. .-.||.|+.
T Consensus 176 ~C~vC~~~~-~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCC-C--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCC-CCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 477776542 23345566669999999999965532 346999964
No 132
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=62.27 E-value=5.1 Score=29.87 Aligned_cols=51 Identities=16% Similarity=0.316 Sum_probs=33.8
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHh-------cCCCCcccCcccc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ-------SHSTCPLCRNPVD 156 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-------~~~~CP~CR~~i~ 156 (309)
+...|.+|...|..-..--....||++|+..|....+. ....|-.|...+.
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 34579999999986443334456999999999776431 1234666655544
No 133
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=61.85 E-value=1.5 Score=32.19 Aligned_cols=43 Identities=35% Similarity=0.783 Sum_probs=28.4
Q ss_pred ecccccccccCcceeecCCCCCccchhHHHHHHhc----C-CCCcccCc
Q 021708 110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----H-STCPLCRN 153 (309)
Q Consensus 110 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~-~~CP~CR~ 153 (309)
|.||...- +.+.+...-.|...||..|++.-|.. . -.||.|+.
T Consensus 29 C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 29 CHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp BTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 55665442 23345555568899999999976643 2 57999975
No 134
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=61.79 E-value=4.2 Score=35.59 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=27.9
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHH
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF 142 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl 142 (309)
++..|.+|...|..-..-..+..||++||..|...++
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYS 199 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcc
Confidence 4568999999998544334555699999999977654
No 135
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=60.90 E-value=1.9 Score=42.44 Aligned_cols=47 Identities=21% Similarity=0.390 Sum_probs=33.4
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHh-----cCCCCcccCccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ-----SHSTCPLCRNPV 155 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~i 155 (309)
..| ||...+..+...+.+-.|..-||..|+.---. ....||.|+...
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 345 99888754555666667999999999964332 246799998654
No 136
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=60.42 E-value=2.3 Score=32.14 Aligned_cols=46 Identities=17% Similarity=0.408 Sum_probs=28.2
Q ss_pred CCCceecccccccccCcceeecCCCC---CccchhHHHHHH--hcCCCCcc-cCc
Q 021708 105 KDGLECAVCLSELEDGEKARLLPKCN---HGFHVECIDMWF--QSHSTCPL-CRN 153 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp~C~---H~FH~~Ci~~Wl--~~~~~CP~-CR~ 153 (309)
.+...| ||..... ++ ++..-.|. .-||..|+.--- .....||. |+.
T Consensus 24 ~~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 344567 9987533 33 44444444 679999996211 12567999 974
No 137
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.30 E-value=5.6 Score=29.21 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=24.0
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHH
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDM 140 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~ 140 (309)
...|.+|...|..-..--....||++|+..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3579999999975332233445999999999543
No 138
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=57.64 E-value=2.7 Score=29.32 Aligned_cols=45 Identities=27% Similarity=0.625 Sum_probs=27.9
Q ss_pred CCceecccccccccCcceeecCC--CC-CccchhHHHHHH--hcCCCCcccCc
Q 021708 106 DGLECAVCLSELEDGEKARLLPK--CN-HGFHVECIDMWF--QSHSTCPLCRN 153 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~Ci~~Wl--~~~~~CP~CR~ 153 (309)
+...| ||.... .++ .+..-. |. .-||..|+..-- .....||.|+.
T Consensus 10 e~~yC-~C~~~~-~g~-MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YGE-MIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CCC-eeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 34557 998863 243 444445 44 789999998211 12456999964
No 139
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.84 E-value=2.4 Score=31.01 Aligned_cols=44 Identities=25% Similarity=0.638 Sum_probs=30.4
Q ss_pred eecccccccccCcceeecCCCCCccchhHHHHHHhc-----CCCCcccCc
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-----HSTCPLCRN 153 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 153 (309)
.|.||...- ++..+...-.|...||..|+++=|.. .-.||.|..
T Consensus 28 ~C~vC~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKH-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCC-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcC-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 688888642 23445566669999999999865532 346998864
No 140
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=55.47 E-value=2.5 Score=40.09 Aligned_cols=49 Identities=12% Similarity=0.247 Sum_probs=0.0
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhc-------CCCCcccCccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS-------HSTCPLCRNPV 155 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-------~~~CP~CR~~i 155 (309)
...|.+|...|..-..-..+..||++||..|...++.. ...|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 45799999998753332344459999999999876521 23466665433
No 141
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.99 E-value=11 Score=27.01 Aligned_cols=41 Identities=29% Similarity=0.459 Sum_probs=31.1
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
....|..|-..+...+.+.. -+..||.+| ..|-.|+..|..
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~ 54 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWP 54 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCT
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCC
Confidence 34579999999876666543 577899988 578899887754
No 142
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=54.90 E-value=2.3 Score=28.38 Aligned_cols=41 Identities=20% Similarity=0.523 Sum_probs=27.7
Q ss_pred ccccccccCcceeecCCCCCccchhHHHHHH---hcCCCCcccCc
Q 021708 112 VCLSELEDGEKARLLPKCNHGFHVECIDMWF---QSHSTCPLCRN 153 (309)
Q Consensus 112 ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl---~~~~~CP~CR~ 153 (309)
||..... +...+..-.|+.-||..|+..-- .....||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6776654 43455555688899999987433 23567998864
No 143
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.69 E-value=7.4 Score=26.94 Aligned_cols=39 Identities=23% Similarity=0.547 Sum_probs=27.8
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
..|..|-..+...+.+... -+..||.+| ..|-.|...|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVA--LDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSCCEEC--SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCccCCCccCCCceEEEE--CCCeEcccC--------CcccccCCcCC
Confidence 4699999888764433332 567889888 57888888874
No 144
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.37 E-value=7.1 Score=26.99 Aligned_cols=40 Identities=20% Similarity=0.555 Sum_probs=29.4
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
..|..|-..+...+.+... -+..||.+| ..|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCC
Confidence 4699999998876544333 567899888 578889887753
No 145
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.74 E-value=8.1 Score=26.78 Aligned_cols=39 Identities=23% Similarity=0.510 Sum_probs=29.0
Q ss_pred ceeccccccccc--CcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 108 LECAVCLSELED--GEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 108 ~~C~ICl~~~~~--~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
..|.-|-..+.. ++.+... -+..||.+| ..|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a--~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISF--EERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEEC--SSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcceEEE--CCcccCccc--------CEeccCCCcCC
Confidence 469999999885 3344332 678899888 57999988875
No 146
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.69 E-value=8.9 Score=27.52 Aligned_cols=39 Identities=26% Similarity=0.593 Sum_probs=30.5
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
...|.-|-..+..++.+.. -+..||.+| ..|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 4579999999987766554 467899888 57999988775
No 147
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.57 E-value=8.9 Score=26.84 Aligned_cols=41 Identities=20% Similarity=0.400 Sum_probs=30.4
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
...|.-|-..+...+.+... -+..||.+| ..|-.|...+..
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCC
Confidence 45799999998865555333 577899888 578889887764
No 148
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=53.50 E-value=11 Score=35.72 Aligned_cols=44 Identities=25% Similarity=0.550 Sum_probs=31.9
Q ss_pred CCceecccccccccCcceeecC--CCCCccchhHHHHHHhc----------CCCCcccCc
Q 021708 106 DGLECAVCLSELEDGEKARLLP--KCNHGFHVECIDMWFQS----------HSTCPLCRN 153 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~Ci~~Wl~~----------~~~CP~CR~ 153 (309)
.+..|.+|-+. ..+..+. .|...||..||+.++.. .-.|=+|.-
T Consensus 92 ~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 92 YQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 34578888854 3455555 68999999999999932 456888863
No 149
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.47 E-value=8.2 Score=27.09 Aligned_cols=40 Identities=20% Similarity=0.426 Sum_probs=31.0
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
...|..|-+.+..++.+.. -+..||.+| ..|-.|+..|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCC
Confidence 3579999999987666543 577899888 579999888763
No 150
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=53.46 E-value=23 Score=21.93 Aligned_cols=8 Identities=25% Similarity=1.049 Sum_probs=3.3
Q ss_pred HHHHHHHh
Q 021708 44 YAKWFWWR 51 (309)
Q Consensus 44 ~~~~~~~R 51 (309)
--.+++||
T Consensus 24 g~tflywr 31 (40)
T 2l9u_A 24 GGTFLYWR 31 (40)
T ss_dssp HHHHHHHH
T ss_pred CceeEEEc
Confidence 33344444
No 151
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=52.71 E-value=13 Score=30.95 Aligned_cols=44 Identities=23% Similarity=0.567 Sum_probs=31.3
Q ss_pred CCCceecccccccccCcceeecC--CCCCccchhHHHHHHhc----------CCCCcccC
Q 021708 105 KDGLECAVCLSELEDGEKARLLP--KCNHGFHVECIDMWFQS----------HSTCPLCR 152 (309)
Q Consensus 105 ~~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~Ci~~Wl~~----------~~~CP~CR 152 (309)
..+..|.||-+. ..+.... .|...|+.+||+.++.. .-.|=+|.
T Consensus 77 G~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 77 GYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp SSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 345578888853 3455554 48899999999999843 34588885
No 152
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=52.00 E-value=6.8 Score=31.65 Aligned_cols=48 Identities=17% Similarity=0.340 Sum_probs=31.0
Q ss_pred CCceecccccccc-cCcceeecCCCCCccchhHHHHHHhc----CCCCcccCc
Q 021708 106 DGLECAVCLSELE-DGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRN 153 (309)
Q Consensus 106 ~~~~C~ICl~~~~-~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 153 (309)
+...|.+|...|. ....-+....|.|.+|..|-..-... ...|=+|+.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 4567999999993 33344566679999999885432111 123777765
No 153
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.75 E-value=11 Score=26.69 Aligned_cols=41 Identities=20% Similarity=0.554 Sum_probs=30.8
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
...|..|-..+..++.++.. -+..||.+| ..|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTT--------CCCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEEE--Ccccccccc--------CchhhCCCccCC
Confidence 35799999998876654333 577899888 578899887753
No 154
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=50.26 E-value=8.2 Score=30.05 Aligned_cols=37 Identities=24% Similarity=0.569 Sum_probs=26.4
Q ss_pred eecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccc
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV 155 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i 155 (309)
.|..|-..+...+.+... -++.||..| ..|-.|...|
T Consensus 10 ~C~~C~~~I~~~e~~~~a--~~~~~H~~C--------F~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRV--KDKVYHLEC--------FKCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCCCCC--SSCCCCTTT--------CBCTTTCCBC
T ss_pred cccCCCCeecCCceEEEE--CCccccccc--------CccccCCCCC
Confidence 699998888765544322 567888888 5688887777
No 155
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=49.61 E-value=18 Score=25.71 Aligned_cols=7 Identities=29% Similarity=0.510 Sum_probs=3.9
Q ss_pred CCCccch
Q 021708 129 CNHGFHV 135 (309)
Q Consensus 129 C~H~FH~ 135 (309)
|.|.|-+
T Consensus 59 C~hr~qk 65 (70)
T 2klu_A 59 SPHRFQK 65 (70)
T ss_dssp CCCCCCC
T ss_pred CcHHHhh
Confidence 6665543
No 156
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=48.29 E-value=4.3 Score=39.39 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=34.5
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHH-----hcCCCCcccCcccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF-----QSHSTCPLCRNPVD 156 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~i~ 156 (309)
..+.||...+..+...+.+-.|..-||..|+.--- .....||.|+....
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred CeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 34669988775455566666799899999995322 13578999987544
No 157
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=46.49 E-value=9.7 Score=22.52 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=20.5
Q ss_pred ceecccccccccCcceeecCCCCCccchhHH
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECI 138 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci 138 (309)
..|+.|-..+...+.+.. -|..||..|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~---~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC---LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS---SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEE---CCeEecccCC
Confidence 469999988876655542 5688999883
No 158
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=46.38 E-value=10 Score=25.92 Aligned_cols=42 Identities=19% Similarity=0.384 Sum_probs=31.1
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccccC
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~ 158 (309)
...|.-|...+...+.+... -+..||..| ..|-.|...+...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~C--------F~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTT--------SSCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCC--------CcccCCCCCCCCC
Confidence 35799999999877655433 567899888 4788898887643
No 159
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=46.26 E-value=9 Score=26.89 Aligned_cols=36 Identities=22% Similarity=0.545 Sum_probs=19.4
Q ss_pred ecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 110 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
|..|-..+..++.+.. -+..||.+| ..|-.|+..|.
T Consensus 3 C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~ 38 (76)
T 1iml_A 3 CPKCDKEVYFAERVTS---LGKDWHRPC--------LKCEKCGKTLT 38 (76)
T ss_dssp CTTTSSBCCGGGEEEE---TTEEEETTT--------CBCTTTCCBCC
T ss_pred CCCCCCEEECceEEEE---CCccccCCC--------CCccccCccCC
Confidence 6666666554444332 355566655 34666665554
No 160
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=45.34 E-value=15 Score=34.61 Aligned_cols=47 Identities=15% Similarity=0.417 Sum_probs=30.1
Q ss_pred ceecccccccccCcceeecCCCCCccchh--HHHHHHh--cCCCCcccCccccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVE--CIDMWFQ--SHSTCPLCRNPVDV 157 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~--Ci~~Wl~--~~~~CP~CR~~i~~ 157 (309)
+.|+|-+..|.. .++-.. |.|+-|.+ =+..... ....||+|...+..
T Consensus 250 L~CPlS~~ri~~--PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp SBCTTTSSBCSS--EEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred ecCCCccccccc--cCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 569988887654 466664 99984443 2322222 24569999987744
No 161
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.27 E-value=12 Score=26.35 Aligned_cols=39 Identities=23% Similarity=0.537 Sum_probs=28.8
Q ss_pred ceeccccccccc--CcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 108 LECAVCLSELED--GEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 108 ~~C~ICl~~~~~--~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
..|..|-..+.. ....+.. -+..||.+| ..|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICF--QDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEE--TTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEE--CCcccCccc--------CChhhCCCcCC
Confidence 469999999885 3333332 678899998 57999988775
No 162
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.72 E-value=25 Score=25.49 Aligned_cols=40 Identities=23% Similarity=0.542 Sum_probs=30.0
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
...|.-|-..+...+.+.. -+..||.+| ..|-.|...|..
T Consensus 15 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLA---NQQVFHISC--------FRCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEEEC---SSSEEETTT--------CBCTTTCCBCCT
T ss_pred CCcCccCCCccCCceeEEE---CCCEECCCC--------CeeCCCCCCCCC
Confidence 4579999999886665432 678899888 568888877764
No 163
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=43.91 E-value=8.6 Score=29.54 Aligned_cols=12 Identities=33% Similarity=1.237 Sum_probs=10.7
Q ss_pred ccchhHHHHHHh
Q 021708 132 GFHVECIDMWFQ 143 (309)
Q Consensus 132 ~FH~~Ci~~Wl~ 143 (309)
.||..||.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999995
No 164
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=43.62 E-value=8.8 Score=29.44 Aligned_cols=12 Identities=25% Similarity=0.902 Sum_probs=10.7
Q ss_pred ccchhHHHHHHh
Q 021708 132 GFHVECIDMWFQ 143 (309)
Q Consensus 132 ~FH~~Ci~~Wl~ 143 (309)
.||..||.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999995
No 165
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=42.48 E-value=22 Score=25.66 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=29.4
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
....|.-|-+.+.. +.+. . -+..||.+| ..|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~~-~~~~-a--~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVVK-A--RDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-CCEE-S--SSCEECTTT--------CCCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-cEEE-E--CCceECccC--------CEecCCCCCCCC
Confidence 34579999999875 3332 2 678899888 579999888754
No 166
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.62 E-value=25 Score=24.91 Aligned_cols=39 Identities=15% Similarity=0.409 Sum_probs=28.9
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
...|.-|-..+. ++.+.. -+..||.+| ..|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~-~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 15 KYICQKCHAIID-EQPLIF---KNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CCBCTTTCCBCC-SCCCCC---SSSCCCTTT--------SBCSSSCCBCCT
T ss_pred CCCCccCCCEec-ceEEEE---CcceeCCCC--------CEeCCCCCccCC
Confidence 357999999988 343322 677899888 579999888763
No 167
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=41.49 E-value=19 Score=33.84 Aligned_cols=48 Identities=23% Similarity=0.403 Sum_probs=30.7
Q ss_pred ceecccccccccCcceeecCCCCCc--cchhHHHHHHhc--CCCCcccCcccccC
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHG--FHVECIDMWFQS--HSTCPLCRNPVDVE 158 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~--FH~~Ci~~Wl~~--~~~CP~CR~~i~~~ 158 (309)
+.|+|=+..|.. .+|-.. |.|+ |-..=+...... ...||+|...+...
T Consensus 216 L~CPlS~~ri~~--P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp SBCTTTCSBCSS--EEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeCCCccceecc--CCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCHH
Confidence 469988877654 366664 9999 443333333322 45699999987543
No 168
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=40.66 E-value=4 Score=31.47 Aligned_cols=45 Identities=27% Similarity=0.546 Sum_probs=30.6
Q ss_pred eecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCcc
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRNP 154 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 154 (309)
.|.||...-. ++.+.....|...||..|+++=|.. ...||.|+.-
T Consensus 56 ~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGE-DSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSC-CTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCC-CCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 4777776533 2345666679999999999865533 4458888643
No 169
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=39.48 E-value=13 Score=29.18 Aligned_cols=38 Identities=21% Similarity=0.472 Sum_probs=29.5
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
..|.-|-..+.....+.. -+..||.+| ..|-.|+..|.
T Consensus 62 ~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 479999999885433433 678899988 67999998886
No 170
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=38.60 E-value=20 Score=24.20 Aligned_cols=39 Identities=26% Similarity=0.479 Sum_probs=28.7
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
...|..|-..+. ++.+ .. -+..||.+| ..|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~-~~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVV--NA-MGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCEE--CC-TTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceEE--EE-CccccccCc--------CEECCCCCCCCC
Confidence 357999999988 4433 22 578899888 579999888753
No 171
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=37.85 E-value=9.5 Score=27.11 Aligned_cols=40 Identities=28% Similarity=0.623 Sum_probs=28.8
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
...|..|-..+..++.+.. -+..||.+| ..|-.|+..|..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCC--------FLCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSS--------EECSSSCCEECS
T ss_pred CCcCcCcCccccCceeEEe---CCccccccc--------CccCCCCCCCCC
Confidence 3569999999876665433 567888887 468888877753
No 172
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.12 E-value=23 Score=24.97 Aligned_cols=39 Identities=21% Similarity=0.514 Sum_probs=28.3
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
..|..|-..+..++.+... -+..||..| ..|-.|...|.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFY--EDRHFHEGC--------FRCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCC--SSCCCBTTT--------SBCTTTCCBCS
T ss_pred CcCccCCCccccCcEEEEe--CCccccccC--------CeecCCCCccC
Confidence 4799999998843443322 468899888 56889988775
No 173
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=35.97 E-value=3.6 Score=31.93 Aligned_cols=45 Identities=22% Similarity=0.255 Sum_probs=27.4
Q ss_pred eecccccccccCcceeecCCCCCccchhHHHHHHh--------cCCCCcccCc
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQ--------SHSTCPLCRN 153 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~--------~~~~CP~CR~ 153 (309)
.|..|......++.++..-.|.+.||..|+..... ....||.|+.
T Consensus 61 ~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 61 EVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CBCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred cccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 34455444444444555566999999999875321 1245998863
No 174
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.91 E-value=25 Score=25.44 Aligned_cols=39 Identities=23% Similarity=0.421 Sum_probs=29.0
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
...|.-|-..+. ++.+.. -+..||.+| ..|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~-~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLVA---LGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-SCEEEE---TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCccCCCEec-ceEEEE---CCccccccC--------CccCCCCCCCCC
Confidence 457999999985 343332 678899888 579999888863
No 175
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.82 E-value=12 Score=26.62 Aligned_cols=46 Identities=20% Similarity=0.394 Sum_probs=27.4
Q ss_pred CceecccccccccCcceeecCCCC---CccchhHHHHHH--hcCCCCcccCccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCN---HGFHVECIDMWF--QSHSTCPLCRNPV 155 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~---H~FH~~Ci~~Wl--~~~~~CP~CR~~i 155 (309)
...| ||.... .+ ..+..-.|. .-||..|+..-- .....||.|+...
T Consensus 6 ~~yC-~C~~~~-~g-~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 6 SGYC-ICNQVS-YG-EMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCS-TTSCCC-CS-SEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CeEE-EcCCCC-CC-CEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCccc
Confidence 3456 587763 33 333333443 679999998322 2245699997654
No 176
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.37 E-value=27 Score=23.76 Aligned_cols=39 Identities=23% Similarity=0.510 Sum_probs=27.8
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
...|..|-..+.. +.+.. -+..||.+| ..|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIKA---MNNSWHPEC--------FRCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCS-CCEEE---TTEEECTTT--------SBCSSSCCBCSS
T ss_pred CCcCccCCCEecc-eEEEE---CcccccccC--------CEeCCCCCcCCC
Confidence 3469999998873 43332 567889888 478889887764
No 177
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=34.83 E-value=3.3 Score=32.32 Aligned_cols=46 Identities=20% Similarity=0.606 Sum_probs=31.3
Q ss_pred eecccccccccCcceeecCCCCCccchhHHHHHHhc----CCCCcccCccc
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQS----HSTCPLCRNPV 155 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~i 155 (309)
.|.||...-. +..+...-.|...||..|+.+=|.. .-.||.|+..+
T Consensus 60 ~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSEN-DDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTT-TTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCC-CCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 4788877533 3445566569999999999965533 34588886544
No 178
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.92 E-value=25 Score=24.76 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=28.1
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
...|.-|-..+.. +.+. . -+..||.+| ..|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~-~~~~-a--~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VFVK-L--RDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS-SCEE-C--SSCEECTTT--------TSCSSSCCCHH
T ss_pred CCccccCCCCccC-cEEE-E--CcceeCcCc--------CeeCCCCCCCC
Confidence 4579999999875 3332 2 678899888 47889988775
No 179
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.73 E-value=30 Score=24.33 Aligned_cols=38 Identities=29% Similarity=0.665 Sum_probs=28.3
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
..|..|-..+. ++.+.. -+..||.+| ..|-.|+..|..
T Consensus 16 ~~C~~C~~~I~-~~~v~a---~~~~wH~~C--------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVSA---LGKTYHPDC--------FVCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCC-SCCEEE---TTEEECTTT--------SSCSSSCCCCCS
T ss_pred CcCccccCEec-cceEEE---CCceeCccC--------CccccCCCCCCC
Confidence 47999999987 344432 578899888 578899887753
No 180
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=33.46 E-value=24 Score=29.07 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=30.7
Q ss_pred CCceecccccccccC-cceeecCCCCCccchhHHHHHHhc--CCCCcccCc
Q 021708 106 DGLECAVCLSELEDG-EKARLLPKCNHGFHVECIDMWFQS--HSTCPLCRN 153 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~ 153 (309)
++..|.+|...|.-- ..-..+..|+|.+|..|- .|+.. ...|=+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 456899999986421 223456679999999996 34432 223777754
No 181
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.43 E-value=27 Score=24.57 Aligned_cols=37 Identities=22% Similarity=0.441 Sum_probs=27.6
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
..|..|-+.+. ++.+.. -+..||.+| ..|-.|...|.
T Consensus 16 ~~C~~C~~~I~-~~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFMVA---GEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCC-SCCBCC---TTCCBCTTS--------CBCTTTCCBCC
T ss_pred CcCccCCCCcC-ceEEEE---CCceecccc--------CCccCCCCccC
Confidence 46999999988 333322 578899888 57999988875
No 182
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=32.41 E-value=5.1 Score=29.23 Aligned_cols=19 Identities=26% Similarity=0.831 Sum_probs=15.3
Q ss_pred CCCCccchhHHHHHHhcCCCC
Q 021708 128 KCNHGFHVECIDMWFQSHSTC 148 (309)
Q Consensus 128 ~C~H~FH~~Ci~~Wl~~~~~C 148 (309)
+|+|.|+..|...|=. ..|
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCSCCEETTTTEECCS--SCS
T ss_pred CCCCeeccccCccccC--Ccc
Confidence 6999999999999843 445
No 183
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=32.14 E-value=12 Score=28.93 Aligned_cols=25 Identities=28% Similarity=0.512 Sum_probs=15.9
Q ss_pred CCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 128 KCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 128 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
+||+.| ..-+.....||.|+..-..
T Consensus 72 ~CG~~F-----~~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 72 KCGFVF-----KAEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp TTCCBC-----CCCSSCCSSCSSSCCCCBC
T ss_pred hCcCee-----cccCCCCCCCcCCCCCccC
Confidence 488888 1122334679999876543
No 184
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=31.54 E-value=22 Score=24.76 Aligned_cols=39 Identities=21% Similarity=0.480 Sum_probs=28.4
Q ss_pred ceeccccccccc---CcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 108 LECAVCLSELED---GEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 108 ~~C~ICl~~~~~---~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
..|.-|-..+.. ....... -+..||.+| ..|-.|+..|.
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 57 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAY--EGQSWHDYC--------FHCKKCSVNLA 57 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEE--TTEEEETTT--------CBCSSSCCBCT
T ss_pred ccCcccCCcccCCCCCceeEEE--CcceeCccc--------CEehhcCCCCC
Confidence 569999999884 3333322 567899888 57999988875
No 185
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=31.12 E-value=5.1 Score=29.54 Aligned_cols=20 Identities=30% Similarity=0.773 Sum_probs=16.2
Q ss_pred eeecCCCCCccchhHHHHHH
Q 021708 123 ARLLPKCNHGFHVECIDMWF 142 (309)
Q Consensus 123 ~~~lp~C~H~FH~~Ci~~Wl 142 (309)
.+..++|+|.|+..|-..|=
T Consensus 43 ~v~C~~C~~~FC~~C~~~w~ 62 (86)
T 2ct7_A 43 EATCPQCHQTFCVRCKRQWE 62 (86)
T ss_dssp CEECTTTCCEECSSSCSBCC
T ss_pred ceEeCCCCCccccccCCchh
Confidence 35677799999999988883
No 186
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=30.93 E-value=64 Score=20.02 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021708 29 IVLFFVVVFILFLHLYAKW 47 (309)
Q Consensus 29 i~l~~vv~~iill~~~~~~ 47 (309)
.++|+.+-.++++++|++-
T Consensus 11 t~Lfi~iPt~FLlilYvqT 29 (36)
T 3arc_M 11 TALFVLVPSVFLIILYVQT 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhee
Confidence 3445555566666677764
No 187
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=30.21 E-value=11 Score=23.22 Aligned_cols=15 Identities=27% Similarity=0.837 Sum_probs=10.3
Q ss_pred CceecccccccccCc
Q 021708 107 GLECAVCLSELEDGE 121 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~ 121 (309)
+..|+||+.++...+
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 467888887776533
No 188
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=29.88 E-value=24 Score=29.37 Aligned_cols=37 Identities=27% Similarity=0.647 Sum_probs=18.5
Q ss_pred eecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccc
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV 155 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i 155 (309)
.|..|-..+...+.+... -++.||..| ..|-.|...|
T Consensus 71 ~C~~C~~~I~~~e~~i~a--~~~~~H~~C--------F~C~~C~~~L 107 (188)
T 1rut_X 71 ACSACGQSIPASELVMRA--QGNVYHLKC--------FTCSTCRNRL 107 (188)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEECGGG--------CBCTTTCCBC
T ss_pred ccccCCCccccCcEEEEc--CCCEEeCCC--------CeECCCCCCC
Confidence 355665555443332221 455566655 3566665554
No 189
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=29.75 E-value=11 Score=25.91 Aligned_cols=36 Identities=22% Similarity=0.558 Sum_probs=23.7
Q ss_pred ceecccccccccCccee--ecCC--CCCccchhHHHHHHh
Q 021708 108 LECAVCLSELEDGEKAR--LLPK--CNHGFHVECIDMWFQ 143 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~--~lp~--C~H~FH~~Ci~~Wl~ 143 (309)
..|+-|...++..+... .... |+|.|++.|+..|-.
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 45888888877654321 2222 778888888888864
No 190
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=28.61 E-value=29 Score=23.57 Aligned_cols=15 Identities=33% Similarity=0.747 Sum_probs=10.1
Q ss_pred CCceecccccccccC
Q 021708 106 DGLECAVCLSELEDG 120 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~ 120 (309)
+-..|++|...+...
T Consensus 9 ~iL~CP~c~~~L~~~ 23 (56)
T 2kpi_A 9 EILACPACHAPLEER 23 (56)
T ss_dssp TSCCCSSSCSCEEEE
T ss_pred hheeCCCCCCcceec
Confidence 345788888876543
No 191
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=27.45 E-value=41 Score=24.57 Aligned_cols=10 Identities=20% Similarity=0.660 Sum_probs=4.8
Q ss_pred eecccccccc
Q 021708 109 ECAVCLSELE 118 (309)
Q Consensus 109 ~C~ICl~~~~ 118 (309)
.|..|-..+.
T Consensus 7 ~C~~C~~~I~ 16 (101)
T 2cup_A 7 GCVECRKPIG 16 (101)
T ss_dssp BCSSSCCBCC
T ss_pred cCcccCCccc
Confidence 3555555543
No 192
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=27.19 E-value=34 Score=23.05 Aligned_cols=39 Identities=21% Similarity=0.500 Sum_probs=28.6
Q ss_pred ceecccccccccCcceeecCCCCCccc--hhHHHHHHhcCCCCcccCcccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFH--VECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH--~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
..|.-|-..+..++..+.. -+..|| .+| ..|-.|+..|.
T Consensus 3 ~~C~~C~~~I~~~~~~v~a--~~~~wH~~~~C--------F~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTY--NNFSWHASTEC--------FLCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTSCEEEE--TTEEEETTTTT--------SBCTTTCCBCT
T ss_pred CCCcCCCCeeccCceEEEE--CCCccCCCCCC--------EECCCCCCcCC
Confidence 3699999998864333332 578899 888 57889988875
No 193
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.01 E-value=37 Score=23.00 Aligned_cols=37 Identities=16% Similarity=0.521 Sum_probs=26.6
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
..|.-|-..+.. +.+.. -+..||.+| ..|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITS-GGITY---QDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCT-TCEEE---TTEEECTTT--------TBCTTTCCBCT
T ss_pred CCCcccCCEeCc-ceEEE---CccccccCc--------CEECCCCCCCC
Confidence 469999988864 44433 567888887 46888888775
No 194
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=26.68 E-value=34 Score=27.87 Aligned_cols=38 Identities=21% Similarity=0.618 Sum_probs=19.0
Q ss_pred eecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 109 ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 109 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
.|..|...+...+.+... -++.||.+| ..|-.|...|.
T Consensus 67 ~C~~C~~~I~~~~~v~~a--~~~~~H~~C--------F~C~~C~~~L~ 104 (169)
T 2rgt_A 67 KCAACQLGIPPTQVVRRA--QDFVYHLHC--------FACVVCKRQLA 104 (169)
T ss_dssp BCTTTCCBCCTTSEEEEE--TTEEEEGGG--------CBCTTTCCBCC
T ss_pred cccccccccCCCcEEEEc--CCceEeeCC--------CcCCCCCCCCC
Confidence 455555555443332221 455566665 35666665553
No 195
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=26.61 E-value=29 Score=26.80 Aligned_cols=36 Identities=25% Similarity=0.611 Sum_probs=0.0
Q ss_pred ecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccc
Q 021708 110 CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV 155 (309)
Q Consensus 110 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i 155 (309)
|..|...+...+.++.. -++.||.+| ..|-.|...|
T Consensus 69 C~~C~~~I~~~e~~~~a--~~~~~H~~C--------F~C~~C~~~L 104 (131)
T 2xjy_A 69 CASCDKRIRAYEMTMRV--KDKVYHLEC--------FKCAACQKHF 104 (131)
T ss_dssp CTTTCCEECTTSEEEEE--TTEEEEGGG--------CBCTTTCCBC
T ss_pred hhhcCCccCccceeEee--CCceECccC--------cccCCCCCCC
No 196
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.00 E-value=37 Score=23.52 Aligned_cols=37 Identities=16% Similarity=0.440 Sum_probs=26.8
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
..|.-|-..+.. +.+. .-+..||.+| ..|-.|...|.
T Consensus 6 ~~C~~C~~~I~~-~~v~---a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-RVLE---AGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-CCBC---CSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecC-eeEE---eCCCCCCCCc--------CEeCCCCCCCC
Confidence 469999988874 3322 2678899888 57888888775
No 197
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=24.70 E-value=18 Score=25.68 Aligned_cols=20 Identities=25% Similarity=0.770 Sum_probs=14.4
Q ss_pred HHHHhcCCCCcccCcccccC
Q 021708 139 DMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 139 ~~Wl~~~~~CP~CR~~i~~~ 158 (309)
+.||..--.||.|+.++...
T Consensus 2 d~~LLeiL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLKLS 21 (69)
T ss_dssp -CCGGGTCCCTTTCCCCEEC
T ss_pred ChHHHhheeCCCCCCcCeEe
Confidence 55677777899999887643
No 198
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.78 E-value=41 Score=22.74 Aligned_cols=37 Identities=22% Similarity=0.585 Sum_probs=26.9
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
..|..|-..+.. +.+.. -+..||.+| ..|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITT-GGVTY---REQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCS-SEEES---SSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCcccCCeecc-ceEEE---CccccCCCC--------CccCCCCCcCC
Confidence 469999998874 33322 577899888 57889988775
No 199
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.65 E-value=42 Score=23.56 Aligned_cols=38 Identities=29% Similarity=0.627 Sum_probs=27.9
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCcccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 156 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~ 156 (309)
...|.-|-..+.. ..+.. -+..||.+| ..|-.|...|.
T Consensus 15 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILD-RILRA---MGKAYHPGC--------FTCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCS-CCEEE---TTEEECTTT--------CBCSSSCCBCT
T ss_pred CCccccCCCeecc-eeEEE---CCccccHHh--------cCcccCCCccC
Confidence 4579999998873 33322 577899888 57999988875
No 200
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=23.07 E-value=57 Score=27.07 Aligned_cols=40 Identities=20% Similarity=0.463 Sum_probs=29.5
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
...|..|-..+..++.+.. -+..||.+| ..|-.|+..|..
T Consensus 115 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 154 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIG---AGKSWHKSC--------FRCAKCGKSLES 154 (192)
T ss_dssp CEECTTTSCEECSSSCEEE---TTEEECTTT--------CBCTTTCCBCCS
T ss_pred CCcCCCCCCEecCcEEEec---CCCccchhc--------CCccccCCCCCC
Confidence 4569999999877666543 567888887 578888877753
No 201
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=22.10 E-value=19 Score=25.55 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=14.9
Q ss_pred HHHHhcCCCCcccCcccccC
Q 021708 139 DMWFQSHSTCPLCRNPVDVE 158 (309)
Q Consensus 139 ~~Wl~~~~~CP~CR~~i~~~ 158 (309)
+.||..--.||+|+.++...
T Consensus 4 d~~LLeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRYL 23 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEEE
T ss_pred CHHHHHHhCCCCCCCcCeEe
Confidence 46777777899999877644
No 202
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.94 E-value=43 Score=25.36 Aligned_cols=9 Identities=22% Similarity=0.804 Sum_probs=4.4
Q ss_pred ecccccccc
Q 021708 110 CAVCLSELE 118 (309)
Q Consensus 110 C~ICl~~~~ 118 (309)
|.-|-..+.
T Consensus 6 C~~C~~~I~ 14 (114)
T 1j2o_A 6 CGGCQQNIG 14 (114)
T ss_dssp BSSSCSCBC
T ss_pred CcCCCCeeC
Confidence 455554444
No 203
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=21.80 E-value=1.2e+02 Score=18.83 Aligned_cols=21 Identities=10% Similarity=0.344 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 021708 23 IMVIAIIVLFFVVVFILFLHL 43 (309)
Q Consensus 23 i~~i~ii~l~~vv~~iill~~ 43 (309)
++.++++++++.++++++.++
T Consensus 7 L~~lan~lG~~~~~LIVlYH~ 27 (37)
T 2lat_A 7 LAIFANMLGVSLFLLVVLYHY 27 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555544444333
No 204
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=21.65 E-value=28 Score=20.58 Aligned_cols=10 Identities=40% Similarity=0.800 Sum_probs=8.3
Q ss_pred cchhhhhHhH
Q 021708 271 PMTTRLRSLK 280 (309)
Q Consensus 271 ~~~~r~~s~~ 280 (309)
-.+.|||+||
T Consensus 19 kLAqRLRALR 28 (29)
T 3ggz_E 19 KLAQRLRALR 28 (29)
T ss_pred HHHHHHHHHc
Confidence 4677999997
No 205
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=21.22 E-value=50 Score=24.62 Aligned_cols=15 Identities=27% Similarity=0.518 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHHHHH
Q 021708 34 VVVFILFLHLYAKWF 48 (309)
Q Consensus 34 vv~~iill~~~~~~~ 48 (309)
.++++++|+++.|++
T Consensus 71 FIa~VilLHI~gK~~ 85 (87)
T 2ww9_C 71 FIFSVIALHLLTKFT 85 (87)
T ss_dssp HHHHHHHC-------
T ss_pred HHHHHHHHHHhhhhc
Confidence 344556677777654
No 206
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=20.99 E-value=58 Score=27.03 Aligned_cols=40 Identities=28% Similarity=0.651 Sum_probs=24.7
Q ss_pred CceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 107 GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 107 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
...|..|-+.+..++.+.. -+..||.+| ..|-.|+..|..
T Consensus 7 ~~~C~~C~~~I~~~~~v~a---~g~~wH~~C--------F~C~~C~~~L~~ 46 (192)
T 1b8t_A 7 GKKCGVCQKAVYFAEEVQC---EGSSFHKSC--------FLCMVCKKNLDS 46 (192)
T ss_dssp CEECTTTCCEECSSCCEEE---TTEEECTTT--------CBCTTTCCBCCS
T ss_pred CCcCccCCCeecceeEEEe---CCceecCCC--------CcCcccCCcCCC
Confidence 3467777777765554432 456677666 456667666643
No 207
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=20.95 E-value=1.7e+02 Score=18.46 Aligned_cols=12 Identities=25% Similarity=0.246 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 021708 34 VVVFILFLHLYA 45 (309)
Q Consensus 34 vv~~iill~~~~ 45 (309)
++..++++.+++
T Consensus 23 iIG~IllI~y~I 34 (40)
T 1afo_A 23 VIGTILLISYGI 34 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 208
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=20.48 E-value=1.4e+02 Score=23.81 Aligned_cols=21 Identities=14% Similarity=0.342 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021708 26 IAIIVLFFVVVFILFLHLYAK 46 (309)
Q Consensus 26 i~ii~l~~vv~~iill~~~~~ 46 (309)
|++++.|+.++.+.++.-|+|
T Consensus 56 IL~vmgffgff~~GImLsYiR 76 (138)
T 2k21_A 56 VLMVLGFFGFFTLGIMLSYIR 76 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhH
Confidence 333334444444444444554
No 209
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=20.40 E-value=45 Score=27.48 Aligned_cols=46 Identities=15% Similarity=0.290 Sum_probs=29.1
Q ss_pred CCceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 106 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 106 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
+-+.|..|...|.... . . +=+..||..|..+-+ ...|..|...|..
T Consensus 86 ~CF~C~~C~~~L~~~~-f-~--~~g~~yC~~~y~~~f--~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERC-F-S--RGESVYCKDDFFKRF--GTKCAACQLGIPP 131 (182)
T ss_dssp STTSCTTTCCCCSSCC-E-E--ETTEEECHHHHHHTT--SCCCTTTCCCCCS
T ss_pred ccCccCCCCCccCCCc-e-e--ECCEeeecCcccccc--ccccccCCCccCC
Confidence 3457888888776532 1 2 256677777776543 3468888777764
No 210
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.01 E-value=59 Score=22.57 Aligned_cols=38 Identities=18% Similarity=0.412 Sum_probs=28.0
Q ss_pred ceecccccccccCcceeecCCCCCccchhHHHHHHhcCCCCcccCccccc
Q 021708 108 LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 157 (309)
Q Consensus 108 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~ 157 (309)
..|..|-..+.. +.+.. -+..||.+| ..|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~-~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLSA---MDTVWHPEC--------FVCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCS-SCEEE---TTEEECTTT--------CBCSSSCCBSCS
T ss_pred CccccCCCeecc-eeEEE---CCCeEecCc--------CChhhCCCCCCC
Confidence 479999998875 43432 567899888 579999888764
Done!