Query 021709
Match_columns 308
No_of_seqs 165 out of 2647
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 05:04:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2524 Predicted transcriptio 99.8 1.1E-18 2.4E-23 142.7 12.4 123 140-267 170-292 (294)
2 COG2524 Predicted transcriptio 99.8 2.9E-18 6.2E-23 140.2 11.3 123 36-199 167-290 (294)
3 KOG1764 5'-AMP-activated prote 99.8 6E-17 1.3E-21 145.5 19.7 240 2-272 95-365 (381)
4 PRK15094 magnesium/cobalt effl 99.7 1.1E-16 2.3E-21 139.7 13.7 166 139-308 64-243 (292)
5 PRK14869 putative manganese-de 99.7 9.7E-16 2.1E-20 145.8 17.6 216 41-265 68-303 (546)
6 COG3448 CBS-domain-containing 99.7 5.7E-16 1.2E-20 129.2 13.0 133 135-269 238-375 (382)
7 COG3620 Predicted transcriptio 99.7 1.2E-15 2.6E-20 116.0 13.2 120 142-266 65-184 (187)
8 cd04619 CBS_pair_6 The CBS dom 99.7 2E-15 4.3E-20 113.7 13.2 110 153-263 2-113 (114)
9 cd04630 CBS_pair_17 The CBS do 99.7 2.6E-15 5.6E-20 113.0 13.4 110 153-263 2-113 (114)
10 TIGR03520 GldE gliding motilit 99.7 1.4E-15 3.1E-20 138.8 14.0 162 140-307 189-368 (408)
11 COG3620 Predicted transcriptio 99.7 1.8E-15 3.8E-20 115.1 11.5 122 39-201 63-184 (187)
12 cd04603 CBS_pair_KefB_assoc Th 99.6 3.2E-15 7E-20 112.0 12.8 108 153-263 2-110 (111)
13 PRK11573 hypothetical protein; 99.6 3.1E-15 6.8E-20 136.6 14.4 167 140-308 185-365 (413)
14 cd04641 CBS_pair_28 The CBS do 99.6 5.4E-15 1.2E-19 112.3 13.3 110 153-263 2-119 (120)
15 cd04618 CBS_pair_5 The CBS dom 99.6 3.2E-15 6.9E-20 109.5 11.4 93 153-263 2-97 (98)
16 cd04617 CBS_pair_4 The CBS dom 99.6 7.4E-15 1.6E-19 111.2 12.6 110 153-263 2-117 (118)
17 COG3448 CBS-domain-containing 99.6 5.1E-15 1.1E-19 123.5 12.1 129 38-201 242-372 (382)
18 cd04587 CBS_pair_CAP-ED_DUF294 99.6 1.3E-14 2.8E-19 108.8 12.9 111 153-263 2-112 (113)
19 cd04593 CBS_pair_EriC_assoc_ba 99.6 1.3E-14 2.9E-19 109.2 12.7 110 153-263 2-114 (115)
20 cd04608 CBS_pair_PALP_assoc Th 99.6 4.2E-15 9.2E-20 113.7 10.0 112 152-264 2-123 (124)
21 PRK10892 D-arabinose 5-phospha 99.6 9.2E-15 2E-19 130.5 12.9 123 140-264 200-323 (326)
22 TIGR01303 IMP_DH_rel_1 IMP deh 99.6 2.1E-14 4.6E-19 132.5 15.6 138 121-267 67-204 (475)
23 cd04622 CBS_pair_9 The CBS dom 99.6 2.7E-14 5.9E-19 107.0 13.5 111 153-263 2-112 (113)
24 cd04623 CBS_pair_10 The CBS do 99.6 2.3E-14 5E-19 107.2 13.1 110 153-263 2-112 (113)
25 cd04600 CBS_pair_HPP_assoc Thi 99.6 1.8E-14 3.9E-19 109.9 12.5 111 152-263 2-123 (124)
26 cd04607 CBS_pair_NTP_transfera 99.6 2.8E-14 6.1E-19 107.0 13.3 109 153-263 3-112 (113)
27 PRK07807 inosine 5-monophospha 99.6 1.8E-14 3.9E-19 133.1 14.7 136 122-266 69-205 (479)
28 cd04620 CBS_pair_7 The CBS dom 99.6 2.1E-14 4.5E-19 108.1 12.6 110 153-263 2-114 (115)
29 cd04625 CBS_pair_12 The CBS do 99.6 3.6E-14 7.7E-19 106.2 13.5 110 153-263 2-111 (112)
30 cd04611 CBS_pair_PAS_GGDEF_DUF 99.6 5E-14 1.1E-18 105.1 14.0 109 153-263 2-110 (111)
31 PRK11543 gutQ D-arabinose 5-ph 99.6 1.5E-14 3.2E-19 129.0 13.0 122 141-264 196-318 (321)
32 cd04615 CBS_pair_2 The CBS dom 99.6 2.8E-14 6E-19 107.0 12.6 109 154-263 3-112 (113)
33 cd04627 CBS_pair_14 The CBS do 99.6 3.3E-14 7.2E-19 108.4 13.1 110 153-262 2-121 (123)
34 COG2905 Predicted signal-trans 99.6 8.1E-14 1.8E-18 126.2 17.4 120 142-265 149-269 (610)
35 cd04604 CBS_pair_KpsF_GutQ_ass 99.6 2.8E-14 6.2E-19 107.0 12.3 111 152-263 2-113 (114)
36 cd04613 CBS_pair_SpoIVFB_EriC_ 99.6 2.8E-14 6.1E-19 107.0 12.1 110 153-263 2-113 (114)
37 cd04800 CBS_pair_CAP-ED_DUF294 99.6 5.6E-14 1.2E-18 105.0 13.5 109 153-263 2-110 (111)
38 cd04639 CBS_pair_26 The CBS do 99.6 3E-14 6.5E-19 106.4 12.0 108 153-263 2-110 (111)
39 cd04642 CBS_pair_29 The CBS do 99.6 3.4E-14 7.4E-19 108.9 12.1 110 153-263 2-125 (126)
40 cd04631 CBS_pair_18 The CBS do 99.6 4.3E-14 9.3E-19 107.9 12.4 110 153-263 2-124 (125)
41 cd04643 CBS_pair_30 The CBS do 99.6 3.6E-14 7.8E-19 106.8 11.7 108 153-263 2-115 (116)
42 cd04588 CBS_pair_CAP-ED_DUF294 99.6 9.9E-14 2.1E-18 103.4 13.9 108 153-263 2-109 (110)
43 cd04624 CBS_pair_11 The CBS do 99.6 7.6E-14 1.7E-18 104.4 13.4 109 153-263 2-111 (112)
44 cd04596 CBS_pair_DRTGG_assoc T 99.6 4.7E-14 1E-18 105.0 12.1 105 152-263 2-107 (108)
45 cd04802 CBS_pair_3 The CBS dom 99.6 1.1E-13 2.4E-18 103.5 14.0 110 153-263 2-111 (112)
46 cd04595 CBS_pair_DHH_polyA_Pol 99.6 9.8E-14 2.1E-18 103.5 13.6 108 152-263 2-109 (110)
47 cd04803 CBS_pair_15 The CBS do 99.6 5.2E-14 1.1E-18 107.0 12.2 110 153-263 2-121 (122)
48 COG4109 Predicted transcriptio 99.6 5.1E-14 1.1E-18 120.4 12.8 122 143-271 189-311 (432)
49 cd04801 CBS_pair_M50_like This 99.6 5.2E-14 1.1E-18 105.8 11.6 108 153-263 2-113 (114)
50 cd04614 CBS_pair_1 The CBS dom 99.6 4.3E-14 9.4E-19 103.0 10.8 93 153-263 2-95 (96)
51 cd04629 CBS_pair_16 The CBS do 99.6 4.6E-14 1E-18 105.9 10.9 110 153-263 2-113 (114)
52 cd04590 CBS_pair_CorC_HlyC_ass 99.6 1.2E-13 2.5E-18 103.2 13.1 107 153-263 2-110 (111)
53 cd04582 CBS_pair_ABC_OpuCA_ass 99.6 9.2E-14 2E-18 102.9 12.3 103 153-263 2-105 (106)
54 cd04605 CBS_pair_MET2_assoc Th 99.6 1.7E-13 3.6E-18 102.2 13.8 107 152-263 2-109 (110)
55 cd04640 CBS_pair_27 The CBS do 99.6 7.9E-14 1.7E-18 106.9 12.3 111 153-263 2-125 (126)
56 cd04636 CBS_pair_23 The CBS do 99.5 8E-14 1.7E-18 107.7 11.9 109 153-263 2-131 (132)
57 cd04589 CBS_pair_CAP-ED_DUF294 99.5 1.7E-13 3.7E-18 102.4 13.3 109 153-263 2-110 (111)
58 cd04583 CBS_pair_ABC_OpuCA_ass 99.5 1.2E-13 2.5E-18 102.7 12.2 106 152-263 2-108 (109)
59 cd04612 CBS_pair_SpoIVFB_EriC_ 99.5 1.8E-13 3.9E-18 102.1 13.1 109 153-263 2-110 (111)
60 cd04621 CBS_pair_8 The CBS dom 99.5 1.3E-13 2.8E-18 107.1 12.7 109 153-263 2-134 (135)
61 cd04586 CBS_pair_BON_assoc Thi 99.5 5.8E-14 1.2E-18 108.9 10.7 110 152-263 2-134 (135)
62 cd04585 CBS_pair_ACT_assoc2 Th 99.5 1.5E-13 3.3E-18 104.2 12.8 110 153-263 2-121 (122)
63 cd04609 CBS_pair_PALP_assoc2 T 99.5 1.5E-13 3.3E-18 102.3 12.1 109 153-264 2-110 (110)
64 cd04626 CBS_pair_13 The CBS do 99.5 1.6E-13 3.5E-18 102.5 12.3 108 153-263 2-110 (111)
65 COG1253 TlyC Hemolysins and re 99.5 2E-13 4.4E-18 125.8 14.9 166 139-308 203-383 (429)
66 cd04632 CBS_pair_19 The CBS do 99.5 1.7E-13 3.6E-18 105.2 12.2 111 153-263 2-127 (128)
67 cd04610 CBS_pair_ParBc_assoc T 99.5 3.2E-13 6.9E-18 100.1 12.9 105 152-263 2-106 (107)
68 cd04635 CBS_pair_22 The CBS do 99.5 1.3E-13 2.9E-18 104.7 11.1 111 153-263 2-121 (122)
69 cd04637 CBS_pair_24 The CBS do 99.5 2E-13 4.4E-18 103.8 11.9 110 153-263 2-121 (122)
70 cd04633 CBS_pair_20 The CBS do 99.5 2.1E-13 4.5E-18 103.5 11.8 109 153-263 2-120 (121)
71 PRK01862 putative voltage-gate 99.5 1.7E-13 3.7E-18 131.1 14.0 128 137-267 442-572 (574)
72 cd04599 CBS_pair_GGDEF_assoc2 99.5 3.6E-13 7.9E-18 99.4 12.8 102 153-262 2-103 (105)
73 PRK15094 magnesium/cobalt effl 99.5 7.2E-13 1.6E-17 115.7 15.9 190 30-272 56-253 (292)
74 cd04601 CBS_pair_IMPDH This cd 99.5 3.6E-13 7.7E-18 100.3 11.8 106 152-263 2-109 (110)
75 cd04602 CBS_pair_IMPDH_2 This 99.5 3.8E-13 8.1E-18 101.1 12.0 106 152-263 2-113 (114)
76 cd04606 CBS_pair_Mg_transporte 99.5 2.6E-13 5.7E-18 101.1 11.0 101 157-264 2-108 (109)
77 PTZ00314 inosine-5'-monophosph 99.5 3E-13 6.5E-18 125.9 13.7 138 121-266 74-218 (495)
78 TIGR03520 GldE gliding motilit 99.5 1.1E-12 2.3E-17 120.0 17.1 163 30-237 180-350 (408)
79 cd04618 CBS_pair_5 The CBS dom 99.5 7.8E-13 1.7E-17 96.7 12.2 91 50-196 2-96 (98)
80 TIGR00400 mgtE Mg2+ transporte 99.5 3E-13 6.4E-18 125.4 11.9 175 34-265 124-305 (449)
81 cd04594 CBS_pair_EriC_assoc_ar 99.5 9.2E-13 2E-17 97.3 12.2 100 155-263 4-103 (104)
82 TIGR01302 IMP_dehydrog inosine 99.5 6.8E-13 1.5E-17 122.8 14.0 115 143-265 81-200 (450)
83 COG0517 FOG: CBS domain [Gener 99.5 1.6E-12 3.5E-17 97.8 13.7 109 152-262 7-117 (117)
84 cd02205 CBS_pair The CBS domai 99.5 1.5E-12 3.2E-17 96.7 12.8 110 153-263 2-112 (113)
85 PRK07107 inosine 5-monophospha 99.5 1.4E-12 3E-17 121.3 14.5 108 153-265 106-219 (502)
86 PRK05567 inosine 5'-monophosph 99.4 1.5E-12 3.3E-17 121.7 14.2 115 144-266 89-205 (486)
87 cd04584 CBS_pair_ACT_assoc Thi 99.4 1.3E-12 2.9E-17 98.9 11.4 109 153-263 2-120 (121)
88 TIGR00400 mgtE Mg2+ transporte 99.4 1.5E-12 3.2E-17 120.8 13.9 120 140-268 129-254 (449)
89 PLN02274 inosine-5'-monophosph 99.4 3.3E-12 7.1E-17 119.1 16.0 110 152-267 108-223 (505)
90 cd04603 CBS_pair_KefB_assoc Th 99.4 2.1E-12 4.5E-17 96.6 12.1 106 50-196 2-109 (111)
91 PRK05567 inosine 5'-monophosph 99.4 3.6E-12 7.8E-17 119.2 15.8 172 42-264 88-265 (486)
92 PRK10892 D-arabinose 5-phospha 99.4 1.7E-12 3.7E-17 115.9 12.9 119 39-196 200-321 (326)
93 cd04634 CBS_pair_21 The CBS do 99.4 3.4E-12 7.3E-17 100.1 12.8 109 153-263 2-142 (143)
94 cd04630 CBS_pair_17 The CBS do 99.4 1.2E-12 2.6E-17 98.3 9.6 94 1-94 19-113 (114)
95 cd04591 CBS_pair_EriC_assoc_eu 99.4 3.7E-12 8E-17 94.4 12.1 99 152-263 2-104 (105)
96 cd04641 CBS_pair_28 The CBS do 99.4 1.9E-12 4E-17 98.2 10.7 116 49-196 1-118 (120)
97 cd04614 CBS_pair_1 The CBS dom 99.4 3.9E-12 8.5E-17 92.6 11.9 91 50-196 2-94 (96)
98 TIGR00393 kpsF KpsF/GutQ famil 99.4 1.6E-12 3.6E-17 112.8 11.5 112 142-257 155-268 (268)
99 PRK07807 inosine 5-monophospha 99.4 8.9E-12 1.9E-16 115.3 16.9 180 38-271 86-268 (479)
100 TIGR01303 IMP_DH_rel_1 IMP deh 99.4 2.1E-11 4.6E-16 112.7 18.3 178 38-268 85-263 (475)
101 cd04619 CBS_pair_6 The CBS dom 99.4 2E-12 4.4E-17 97.1 9.6 93 1-93 19-112 (114)
102 TIGR01137 cysta_beta cystathio 99.4 4.9E-12 1.1E-16 118.1 14.2 124 136-265 329-453 (454)
103 cd04599 CBS_pair_GGDEF_assoc2 99.4 1E-11 2.2E-16 91.6 12.7 102 50-196 2-103 (105)
104 cd04801 CBS_pair_M50_like This 99.4 5.6E-12 1.2E-16 94.6 11.4 109 49-196 1-112 (114)
105 COG2905 Predicted signal-trans 99.4 1.4E-12 3E-17 118.3 9.1 94 1-95 175-268 (610)
106 cd04638 CBS_pair_25 The CBS do 99.4 1.1E-11 2.5E-16 91.6 12.5 103 153-263 2-105 (106)
107 PRK11543 gutQ D-arabinose 5-ph 99.4 4.3E-12 9.3E-17 113.1 11.8 117 40-196 196-316 (321)
108 cd04617 CBS_pair_4 The CBS dom 99.4 1.5E-11 3.3E-16 92.9 12.8 110 50-196 2-116 (118)
109 cd04595 CBS_pair_DHH_polyA_Pol 99.4 2.4E-11 5.1E-16 90.5 13.6 107 49-196 2-108 (110)
110 cd04598 CBS_pair_GGDEF_assoc T 99.4 1.2E-11 2.6E-16 93.5 11.9 110 153-263 2-118 (119)
111 cd04600 CBS_pair_HPP_assoc Thi 99.4 1.9E-11 4.1E-16 93.1 12.4 119 49-196 2-122 (124)
112 cd04800 CBS_pair_CAP-ED_DUF294 99.3 2.9E-11 6.4E-16 90.1 12.9 109 49-196 1-109 (111)
113 cd04627 CBS_pair_14 The CBS do 99.3 4.3E-11 9.3E-16 91.1 14.0 116 50-195 2-120 (123)
114 cd04625 CBS_pair_12 The CBS do 99.3 3.7E-11 8E-16 89.7 13.4 109 50-196 2-110 (112)
115 cd04605 CBS_pair_MET2_assoc Th 99.3 4.1E-11 8.9E-16 89.2 13.3 105 49-196 2-108 (110)
116 cd04629 CBS_pair_16 The CBS do 99.3 2.4E-11 5.3E-16 91.0 12.0 111 49-196 1-112 (114)
117 cd04582 CBS_pair_ABC_OpuCA_ass 99.3 3.9E-11 8.5E-16 88.6 12.9 101 50-196 2-104 (106)
118 cd04639 CBS_pair_26 The CBS do 99.3 2.1E-11 4.5E-16 90.9 11.5 106 50-196 2-109 (111)
119 cd04621 CBS_pair_8 The CBS dom 99.3 3E-11 6.5E-16 93.8 12.7 131 50-196 2-133 (135)
120 cd04588 CBS_pair_CAP-ED_DUF294 99.3 4.4E-11 9.5E-16 89.0 13.2 107 49-196 1-108 (110)
121 cd04615 CBS_pair_2 The CBS dom 99.3 3.7E-11 8E-16 89.9 12.8 108 50-196 2-111 (113)
122 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 3.9E-11 8.5E-16 89.3 12.7 108 49-196 1-109 (111)
123 cd04596 CBS_pair_DRTGG_assoc T 99.3 2.3E-11 5.1E-16 90.3 11.4 103 49-196 2-106 (108)
124 cd04631 CBS_pair_18 The CBS do 99.3 3.1E-11 6.8E-16 92.0 12.4 120 49-196 1-123 (125)
125 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 5.4E-11 1.2E-15 88.5 13.4 107 50-196 2-109 (111)
126 cd04623 CBS_pair_10 The CBS do 99.3 1.5E-11 3.2E-16 91.9 10.3 94 1-94 19-112 (113)
127 cd04802 CBS_pair_3 The CBS dom 99.3 5.1E-11 1.1E-15 88.9 13.2 110 49-196 1-110 (112)
128 cd04594 CBS_pair_EriC_assoc_ar 99.3 5.6E-11 1.2E-15 87.7 13.2 99 52-196 4-102 (104)
129 cd04626 CBS_pair_13 The CBS do 99.3 3.9E-11 8.4E-16 89.5 12.5 107 50-196 2-109 (111)
130 cd04589 CBS_pair_CAP-ED_DUF294 99.3 7E-11 1.5E-15 88.1 13.7 108 50-196 2-109 (111)
131 cd04585 CBS_pair_ACT_assoc2 Th 99.3 3.8E-11 8.2E-16 90.9 12.5 119 49-196 1-120 (122)
132 cd04633 CBS_pair_20 The CBS do 99.3 4.8E-11 1E-15 90.4 12.9 119 49-196 1-119 (121)
133 cd04593 CBS_pair_EriC_assoc_ba 99.3 4.4E-11 9.5E-16 89.9 12.4 108 50-196 2-113 (115)
134 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 7.2E-11 1.6E-15 87.6 13.2 104 49-196 2-107 (109)
135 cd04607 CBS_pair_NTP_transfera 99.3 3.2E-11 7E-16 90.3 11.4 107 50-196 3-111 (113)
136 cd04622 CBS_pair_9 The CBS dom 99.3 5.6E-11 1.2E-15 88.8 12.3 110 49-196 1-111 (113)
137 cd04624 CBS_pair_11 The CBS do 99.3 5.7E-11 1.2E-15 88.7 12.3 108 49-196 1-110 (112)
138 cd04586 CBS_pair_BON_assoc Thi 99.3 3.9E-11 8.5E-16 92.9 11.6 130 49-196 2-133 (135)
139 cd04610 CBS_pair_ParBc_assoc T 99.3 7.6E-11 1.6E-15 87.2 12.5 103 49-196 2-105 (107)
140 cd04637 CBS_pair_24 The CBS do 99.3 1.3E-10 2.9E-15 88.1 14.0 118 50-196 2-120 (122)
141 cd04803 CBS_pair_15 The CBS do 99.3 7.6E-11 1.6E-15 89.4 12.1 117 50-196 2-120 (122)
142 PRK07107 inosine 5-monophospha 99.3 1.1E-10 2.3E-15 108.8 15.5 114 43-197 96-217 (502)
143 cd04642 CBS_pair_29 The CBS do 99.3 6E-11 1.3E-15 90.8 11.5 121 50-196 2-124 (126)
144 cd04587 CBS_pair_CAP-ED_DUF294 99.3 1.1E-10 2.4E-15 87.2 12.7 109 50-196 2-111 (113)
145 cd04608 CBS_pair_PALP_assoc Th 99.3 1.9E-11 4.2E-16 93.4 8.5 109 49-196 2-121 (124)
146 cd04620 CBS_pair_7 The CBS dom 99.3 8.6E-11 1.9E-15 88.2 12.0 108 50-196 2-113 (115)
147 cd04636 CBS_pair_23 The CBS do 99.3 1E-10 2.2E-15 90.2 12.5 128 50-196 2-130 (132)
148 cd04643 CBS_pair_30 The CBS do 99.3 9.7E-11 2.1E-15 88.0 12.0 111 50-196 2-114 (116)
149 PRK01862 putative voltage-gate 99.3 5.3E-11 1.1E-15 114.1 12.9 122 38-198 444-569 (574)
150 cd04632 CBS_pair_19 The CBS do 99.3 2E-10 4.4E-15 88.0 13.6 121 50-196 2-126 (128)
151 PRK14869 putative manganese-de 99.3 2.6E-11 5.6E-16 115.6 10.2 135 126-263 230-390 (546)
152 COG4536 CorB Putative Mg2+ and 99.2 5.9E-11 1.3E-15 102.9 10.9 164 141-306 199-375 (423)
153 cd04635 CBS_pair_22 The CBS do 99.2 1.3E-10 2.7E-15 88.2 11.5 118 49-196 1-120 (122)
154 cd04640 CBS_pair_27 The CBS do 99.2 8.8E-11 1.9E-15 89.9 10.6 114 50-196 2-124 (126)
155 PRK11573 hypothetical protein; 99.2 4.8E-10 1.1E-14 102.6 17.2 190 31-272 177-375 (413)
156 cd04590 CBS_pair_CorC_HlyC_ass 99.2 2E-10 4.4E-15 85.5 12.3 105 50-196 2-109 (111)
157 PLN02274 inosine-5'-monophosph 99.2 6.1E-10 1.3E-14 104.0 18.0 112 46-199 105-221 (505)
158 cd04591 CBS_pair_EriC_assoc_eu 99.2 2.2E-10 4.7E-15 84.8 11.9 97 50-196 3-103 (105)
159 cd04613 CBS_pair_SpoIVFB_EriC_ 99.2 7.2E-11 1.6E-15 88.2 9.5 93 1-94 19-113 (114)
160 cd04634 CBS_pair_21 The CBS do 99.2 3.2E-10 6.9E-15 88.8 13.4 139 49-196 1-141 (143)
161 COG4109 Predicted transcriptio 99.2 9.4E-11 2E-15 100.6 10.8 147 8-202 157-308 (432)
162 COG2239 MgtE Mg/Co/Ni transpor 99.2 1E-10 2.2E-15 106.8 11.6 119 140-267 130-254 (451)
163 PTZ00314 inosine-5'-monophosph 99.2 4.9E-10 1.1E-14 104.6 16.4 113 43-197 98-215 (495)
164 COG0517 FOG: CBS domain [Gener 99.2 3E-10 6.5E-15 85.3 12.5 110 46-195 4-116 (117)
165 cd04606 CBS_pair_Mg_transporte 99.2 1.1E-10 2.4E-15 86.8 9.8 98 54-196 2-106 (109)
166 COG4535 CorC Putative Mg2+ and 99.2 5E-11 1.1E-15 96.9 8.3 163 141-307 66-242 (293)
167 cd04602 CBS_pair_IMPDH_2 This 99.2 3.2E-10 6.9E-15 85.0 12.2 103 50-196 3-112 (114)
168 COG1253 TlyC Hemolysins and re 99.2 9.2E-10 2E-14 101.6 17.4 174 19-237 186-368 (429)
169 cd04604 CBS_pair_KpsF_GutQ_ass 99.2 1.2E-10 2.7E-15 87.0 9.6 92 2-94 21-113 (114)
170 cd04584 CBS_pair_ACT_assoc Thi 99.2 4.3E-10 9.3E-15 85.1 12.6 117 50-196 2-119 (121)
171 cd04592 CBS_pair_EriC_assoc_eu 99.2 2.4E-10 5.2E-15 88.4 11.3 98 153-250 2-119 (133)
172 TIGR01302 IMP_dehydrog inosine 99.2 2.3E-10 4.9E-15 106.1 13.1 114 42-198 81-199 (450)
173 cd04638 CBS_pair_25 The CBS do 99.2 6.4E-10 1.4E-14 82.1 12.5 102 50-196 2-104 (106)
174 cd04601 CBS_pair_IMPDH This cd 99.2 3.3E-10 7.2E-15 84.1 10.7 104 49-196 2-108 (110)
175 TIGR00393 kpsF KpsF/GutQ famil 99.2 1.7E-10 3.7E-15 100.2 10.4 111 41-191 155-268 (268)
176 PF00571 CBS: CBS domain CBS d 99.2 1.1E-10 2.4E-15 76.2 6.5 56 211-266 1-56 (57)
177 cd04598 CBS_pair_GGDEF_assoc T 99.2 1.3E-09 2.8E-14 82.2 13.1 111 50-196 2-117 (119)
178 cd04609 CBS_pair_PALP_assoc2 T 99.1 1E-09 2.2E-14 81.4 12.1 106 50-196 2-108 (110)
179 TIGR01137 cysta_beta cystathio 99.1 5.8E-10 1.3E-14 104.2 13.0 144 13-197 300-451 (454)
180 KOG2550 IMP dehydrogenase/GMP 99.1 1.1E-10 2.3E-15 102.1 7.3 108 152-265 116-227 (503)
181 KOG1764 5'-AMP-activated prote 99.1 4.7E-09 1E-13 94.7 16.7 196 49-266 76-286 (381)
182 cd02205 CBS_pair The CBS domai 99.1 3.5E-09 7.5E-14 78.3 12.9 108 50-196 2-111 (113)
183 COG4536 CorB Putative Mg2+ and 99.1 3.6E-09 7.7E-14 92.0 13.2 164 34-237 193-363 (423)
184 TIGR01186 proV glycine betaine 99.0 1.5E-08 3.1E-13 91.3 17.3 107 154-267 252-359 (363)
185 cd04592 CBS_pair_EriC_assoc_eu 98.9 1.7E-08 3.6E-13 78.1 10.5 114 50-182 2-116 (133)
186 PF00571 CBS: CBS domain CBS d 98.9 6.5E-09 1.4E-13 67.7 6.8 54 43-96 1-55 (57)
187 PRK10070 glycine betaine trans 98.9 9.7E-08 2.1E-12 87.0 16.5 104 157-267 290-394 (400)
188 COG2239 MgtE Mg/Co/Ni transpor 98.8 3.1E-08 6.7E-13 90.6 10.9 121 34-199 125-252 (451)
189 KOG0474 Cl- channel CLC-7 and 98.6 1.2E-07 2.6E-12 87.5 7.1 124 139-265 579-746 (762)
190 TIGR01186 proV glycine betaine 98.6 4.3E-06 9.4E-11 75.4 16.4 148 6-199 197-357 (363)
191 PRK10070 glycine betaine trans 98.5 6.1E-06 1.3E-10 75.4 16.6 148 6-200 232-393 (400)
192 COG4175 ProV ABC-type proline/ 98.5 1.3E-06 2.8E-11 75.1 10.4 166 48-267 215-384 (386)
193 KOG0474 Cl- channel CLC-7 and 98.5 2.8E-07 6E-12 85.1 6.3 154 40-196 581-743 (762)
194 COG4535 CorC Putative Mg2+ and 98.4 2.7E-07 5.8E-12 75.5 5.1 160 34-236 60-228 (293)
195 cd04597 CBS_pair_DRTGG_assoc2 98.3 1.4E-06 3.1E-11 65.2 6.0 55 209-263 58-112 (113)
196 KOG0475 Cl- channel CLC-3 and 98.2 2.3E-05 5.1E-10 72.8 11.7 112 153-265 557-694 (696)
197 KOG2550 IMP dehydrogenase/GMP 98.1 8.2E-06 1.8E-10 72.0 7.2 104 49-196 116-224 (503)
198 smart00116 CBS Domain in cysta 98.1 1.6E-05 3.5E-10 48.7 6.1 46 219-264 2-47 (49)
199 cd04597 CBS_pair_DRTGG_assoc2 98.0 1.4E-05 3E-10 59.8 5.6 53 41-93 58-111 (113)
200 KOG0475 Cl- channel CLC-3 and 97.8 8.2E-05 1.8E-09 69.3 8.9 130 51-196 558-691 (696)
201 TIGR03415 ABC_choXWV_ATP choli 97.7 0.00077 1.7E-08 61.3 12.4 83 173-266 298-380 (382)
202 smart00116 CBS Domain in cysta 97.5 0.00044 9.5E-09 42.1 6.0 43 154-196 2-45 (49)
203 TIGR03415 ABC_choXWV_ATP choli 97.2 0.0054 1.2E-07 55.8 12.2 140 6-199 232-379 (382)
204 KOG0476 Cl- channel CLC-2 and 97.2 0.011 2.3E-07 56.8 13.6 61 37-97 584-647 (931)
205 COG4175 ProV ABC-type proline/ 96.8 0.0083 1.8E-07 52.2 8.5 140 6-200 231-382 (386)
206 COG1125 OpuBA ABC-type proline 96.6 0.016 3.5E-07 49.0 8.8 105 153-264 188-308 (309)
207 COG1125 OpuBA ABC-type proline 94.2 0.28 6.1E-06 41.7 7.8 87 7-94 204-307 (309)
208 KOG2118 Predicted membrane pro 91.0 0.82 1.8E-05 43.2 7.3 127 136-266 198-328 (498)
209 KOG0476 Cl- channel CLC-2 and 86.0 1.1 2.5E-05 43.6 4.6 63 208-270 587-651 (931)
210 COG1419 FlhF Flagellar GTP-bin 76.0 15 0.00034 33.6 7.9 143 16-185 233-376 (407)
211 PRK11388 DNA-binding transcrip 71.8 16 0.00034 36.0 7.6 91 163-257 61-162 (638)
212 KOG2118 Predicted membrane pro 62.1 10 0.00022 36.1 3.9 124 37-200 200-328 (498)
213 PF05198 IF3_N: Translation in 57.3 25 0.00055 24.0 4.2 27 240-266 12-38 (76)
214 PF05198 IF3_N: Translation in 48.3 45 0.00097 22.7 4.3 34 5-38 11-44 (76)
215 PF14827 Cache_3: Sensory doma 48.3 20 0.00043 26.4 2.9 17 242-258 93-109 (116)
216 COG2216 KdpB High-affinity K+ 39.1 43 0.00092 31.9 4.0 39 227-266 414-452 (681)
217 PRK11388 DNA-binding transcrip 38.6 1.5E+02 0.0032 29.3 8.0 79 7-88 73-162 (638)
218 PF13365 Trypsin_2: Trypsin-li 32.6 31 0.00068 24.8 1.8 19 237-255 102-120 (120)
219 PF02743 Cache_1: Cache domain 31.8 53 0.0012 22.1 2.8 16 243-258 19-34 (81)
220 CHL00199 infC translation init 29.4 86 0.0019 25.4 3.8 31 5-35 23-53 (182)
221 PF03471 CorC_HlyC: Transporte 26.4 23 0.0005 24.2 0.1 27 281-307 12-38 (81)
222 PF14044 NETI: NETI protein 26.0 88 0.0019 19.9 2.6 23 221-245 3-25 (57)
223 COG1956 GAF domain-containing 24.8 86 0.0019 24.8 3.0 19 73-91 117-135 (163)
224 COG2216 KdpB High-affinity K+ 24.7 2E+02 0.0044 27.6 5.8 42 59-100 414-455 (681)
225 PRK00028 infC translation init 23.8 79 0.0017 25.5 2.7 27 239-265 18-44 (177)
226 COG3284 AcoR Transcriptional a 23.4 2.5E+02 0.0054 27.5 6.3 80 177-259 89-179 (606)
227 PHA00673 acetyltransferase dom 22.4 1.7E+02 0.0036 23.1 4.2 33 226-258 40-72 (154)
228 COG0290 InfC Translation initi 21.5 1.8E+02 0.0039 23.3 4.2 43 174-216 17-66 (176)
229 CHL00199 infC translation init 20.6 1.2E+02 0.0025 24.7 3.1 29 239-267 23-51 (182)
230 TIGR00168 infC translation ini 20.4 90 0.002 24.9 2.4 27 239-265 6-32 (165)
231 PF13596 PAS_10: PAS domain; P 20.3 99 0.0021 21.9 2.5 14 243-256 86-99 (106)
No 1
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.79 E-value=1.1e-18 Score=142.65 Aligned_cols=123 Identities=25% Similarity=0.334 Sum_probs=112.5
Q ss_pred cCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCc
Q 021709 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219 (308)
Q Consensus 140 ~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~ 219 (308)
.+.++.++|. ++++++.+++++.++..+|.+++++.+||+|+++++|++|.+|+. .+++++.- ...++++|.+++
T Consensus 170 Pk~~V~~~~s--~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~-~aia~g~~--~~kV~~~M~k~v 244 (294)
T COG2524 170 PKEKVKNLMS--KKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIA-KAIANGNL--DAKVSDYMRKNV 244 (294)
T ss_pred Ccchhhhhcc--CCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHH-HHHHcCCc--cccHHHHhccCC
Confidence 4556788898 899999999999999999999999999999977999999999995 77766632 568999999999
Q ss_pred eeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (308)
Q Consensus 220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~ 267 (308)
.++.+++.+.+|++.|.++++.+|.|+|.+|+++|+||++||++.+..
T Consensus 245 itI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 245 ITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG 292 (294)
T ss_pred ceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence 999999999999999999999999999999999999999999987643
No 2
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.77 E-value=2.9e-18 Score=140.25 Aligned_cols=123 Identities=22% Similarity=0.354 Sum_probs=110.3
Q ss_pred cCCcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 021709 36 LNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE 115 (308)
Q Consensus 36 ~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~ 115 (308)
..+.+.+++++|+++++++++++++.+|..+|.+++++++||+|+++++|+++.+|+..+....
T Consensus 167 ~siPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~aia~g---------------- 230 (294)
T COG2524 167 VSIPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIANG---------------- 230 (294)
T ss_pred eecCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHHHHHHcC----------------
Confidence 3566778999999999999999999999999999999999999988999999999997653321
Q ss_pred hhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHH
Q 021709 116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD 194 (308)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~d 194 (308)
....++.++|. ++++++..++.+.+|+++|.+++++++.|+| +|+++|++|++|
T Consensus 231 -----------------------~~~~kV~~~M~--k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTD 285 (294)
T COG2524 231 -----------------------NLDAKVSDYMR--KNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTD 285 (294)
T ss_pred -----------------------CccccHHHHhc--cCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHH
Confidence 23456899998 8999999999999999999999999999999 999999999999
Q ss_pred HHHHH
Q 021709 195 ILMRV 199 (308)
Q Consensus 195 l~~~~ 199 (308)
++.++
T Consensus 286 IL~~i 290 (294)
T COG2524 286 ILTRI 290 (294)
T ss_pred HHHHh
Confidence 98554
No 3
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.76 E-value=6e-17 Score=145.45 Aligned_cols=240 Identities=21% Similarity=0.219 Sum_probs=175.4
Q ss_pred CCCCcCEEEEECC-CCcEEEEEehhHHHHHHHHhcc------CCcc---------ccc----ccccccCceEEeCCCcHH
Q 021709 2 AARRVDALLLTDS-NALLCGILTDKDIATRVIAREL------NLEE---------TPV----SKVMTRNPTFVLSDTLAV 61 (308)
Q Consensus 2 ~~~~~~~~~V~~~-~~~~~Giit~~D~~~~~~~~~~------~~~~---------~~v----~~im~~~~~~v~~~~~l~ 61 (308)
..++.++.|+++. .....|+++..|+...+..... +... ..+ +....++++.+.+..++.
T Consensus 95 ~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l 174 (381)
T KOG1764|consen 95 VQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLL 174 (381)
T ss_pred HhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCcHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHH
Confidence 3567888999985 3578999999999854433111 0000 011 111223448999999999
Q ss_pred HHHHHhHhCCCcEeeEee--CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHh
Q 021709 62 EALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERM 139 (308)
Q Consensus 62 ~a~~~m~~~~~~~~pVvd--~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (308)
++...+.+++++++||.| .+.+..+++.+.+++.+........ +.. +
T Consensus 175 ~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~------------------------------~~~-~ 223 (381)
T KOG1764|consen 175 DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLP------------------------------LPS-L 223 (381)
T ss_pred HHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccc------------------------------cHH-H
Confidence 999999999999999998 4899999999999887553322110 011 1
Q ss_pred cCCCcccccCC-CCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccc-ccccc-
Q 021709 140 FRPSLSTIIPE-KSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTL-VEKVM- 215 (308)
Q Consensus 140 ~~~~v~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~-v~~~~- 215 (308)
...++.++-.. ..++..+..++++.+|+++|..++++.+||++ .|..+|.++..|+...+........... ++...
T Consensus 224 l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~ 303 (381)
T KOG1764|consen 224 LSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALS 303 (381)
T ss_pred hhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccchhHHHHHhh
Confidence 12223222211 14599999999999999999999999999999 7777999999999644444444333333 33222
Q ss_pred -----ccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcCC
Q 021709 216 -----TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNT 272 (308)
Q Consensus 216 -----~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~~ 272 (308)
.....++..+.+|.+++.+|..++.++++|||++|.++|+||..||+.++.....+.
T Consensus 304 ~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p~~~ 365 (381)
T KOG1764|consen 304 HRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTPSGG 365 (381)
T ss_pred hcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCccCC
Confidence 235689999999999999999999999999999999999999999999888765553
No 4
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.72 E-value=1.1e-16 Score=139.69 Aligned_cols=166 Identities=16% Similarity=0.210 Sum_probs=132.9
Q ss_pred hcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 021709 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (308)
Q Consensus 139 ~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~ 216 (308)
+...++.++|.++.++.+++++.++.++.+.+.+++++++||++ + +.++|+++.+|++ ........ ..++.++|.
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll-~~~~~~~~--~~~l~~l~r 140 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLL-PFMRSDAE--AFSMDKVLR 140 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHH-hHhhccCC--cCCHHHHcC
Confidence 45667899999766899999999999999999999999999998 4 7899999999996 44332221 234678886
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcCCCCCCC------------cchhhhH
Q 021709 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNN------------EAASTMM 284 (308)
Q Consensus 217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~~~~~~~------------~~~~~~~ 284 (308)
.+.+++++.++.++++.|.+++.+.+||+|+.|.++|+||+.||++.+++.......... .+.....
T Consensus 141 -~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~~~~~~~v~G~~~ 219 (292)
T PRK15094 141 -QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALAS 219 (292)
T ss_pred -CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccccccccccEEeCCCeEEEEeccC
Confidence 566899999999999999999999999999999999999999999999987655432111 1222233
Q ss_pred HHHHHhhccCCCCCchhhhccccC
Q 021709 285 QKFWDSAMALSPNDDEEDNRRFYA 308 (308)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~ 308 (308)
....+..+.++++.++|+|++||.
T Consensus 220 l~dl~~~l~~~l~~~~~~Tl~G~i 243 (292)
T PRK15094 220 IEDFNEAFGTHFSDEEVDTIGGLV 243 (292)
T ss_pred HHHHHHHhCCCCCCCCCccHHHHH
Confidence 566667777888878999999973
No 5
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.69 E-value=9.7e-16 Score=145.83 Aligned_cols=216 Identities=20% Similarity=0.228 Sum_probs=151.0
Q ss_pred cccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhh
Q 021709 41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK 119 (308)
Q Consensus 41 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (308)
.+++++|.++++++++++++.+|+++|.+++++.+||++ +|+++|+++..|+.+........ +.......++..+.+
T Consensus 68 ~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~--~~~~~~~~t~~~i~~ 145 (546)
T PRK14869 68 PQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDP--EILSKSPTSLENIIR 145 (546)
T ss_pred CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcch--hhhhhcCCCHHHHHH
Confidence 578999999999999999999999999999999999998 68999999999998776643321 011112233333444
Q ss_pred ccCCCCCChhHHHHHH-HHHhc----CCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCC----------
Q 021709 120 HWGTSISGPNTFIETL-RERMF----RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN---------- 184 (308)
Q Consensus 120 ~~~~~~~~~~~~~~~~-~~~~~----~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~---------- 184 (308)
.++............. ..... ...+.+.+.+ ..++.+..+..+ ...+.+.+.++++|+.+.
T Consensus 146 ~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~-~~lvi~gdr~d~---~~~ai~~~~~~lIlt~g~~~~~~v~~la 221 (546)
T PRK14869 146 TLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEE-GDIVIVGDREDI---QLAAIEAGVRLLIITGGAPVSEDVLELA 221 (546)
T ss_pred hcCcEEEecCcccccccccEEEEEcCHHHHHHhccC-CCEEEEcCcHHH---HHHHHHcCCCEEEECCCCCCCHHHHHHH
Confidence 3333322111100000 00000 0011223332 345555555443 334677889999888632
Q ss_pred ---EEEEEeeHHHHHHHHHhcCCCccccccccccc-cCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhH
Q 021709 185 ---KPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIH 260 (308)
Q Consensus 185 ---~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~d 260 (308)
.+.+++|..|....+. .-.. ..+++++|+ +++.++++++++.++.+.|..++.+.+||+|++|+++|+||..|
T Consensus 222 ~~~~i~ii~t~~dt~~t~~-~l~~--~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~d 298 (546)
T PRK14869 222 KENGVTVISTPYDTFTTAR-LINQ--SIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYH 298 (546)
T ss_pred HhCCCeEEEecccHHHHHH-Hhhc--CCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHH
Confidence 3888999999964433 2222 568999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 021709 261 ITHAA 265 (308)
Q Consensus 261 i~~~~ 265 (308)
+++..
T Consensus 299 l~~~~ 303 (546)
T PRK14869 299 LLSPV 303 (546)
T ss_pred hhccc
Confidence 99854
No 6
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.68 E-value=5.7e-16 Score=129.20 Aligned_cols=133 Identities=26% Similarity=0.313 Sum_probs=114.0
Q ss_pred HHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHh----cCCCcccc
Q 021709 135 LRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVIS----QNLPADST 209 (308)
Q Consensus 135 ~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~----~~~~~~~~ 209 (308)
+.-.+..-...++|. +++++++.++++.++.+++.+++++.+||+| +.+++|+||.+|++..+.. ........
T Consensus 238 ~~R~~~~LtcadIMS--rdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~ 315 (382)
T COG3448 238 LRRRMGELTCADIMS--RDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPP 315 (382)
T ss_pred HHHHhccccHHHhcC--ccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCC
Confidence 333455566789998 8999999999999999999999999999999 8899999999999742221 11222345
Q ss_pred ccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHh
Q 021709 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV 269 (308)
Q Consensus 210 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~ 269 (308)
.++.+|++...++.++++..+++-.+.+.+.+++||+|+.|+++||||++|++.+++...
T Consensus 316 ~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~ 375 (382)
T COG3448 316 TVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNW 375 (382)
T ss_pred cccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999998877543
No 7
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.68 E-value=1.2e-15 Score=115.99 Aligned_cols=120 Identities=23% Similarity=0.269 Sum_probs=105.5
Q ss_pred CCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCcee
Q 021709 142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC 221 (308)
Q Consensus 142 ~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~ 221 (308)
.....+|. .+++.+++++++.++.++|.+++++.+||+++++++|-||..++.+..+....+.....+..+|...+++
T Consensus 65 ita~~iM~--spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~fP~ 142 (187)
T COG3620 65 ITAKTIMH--SPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGMESIRSLRVREVMGEPFPT 142 (187)
T ss_pred EeHhhhcc--CCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCCCc
Confidence 34578887 8999999999999999999999999999999999999999999975555554666678899999999999
Q ss_pred ecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709 222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266 (308)
Q Consensus 222 v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~ 266 (308)
|++++++..+.+++..++. +.|+ ++|+++||||+.||++.+.
T Consensus 143 Vs~~~~l~vI~~LL~~~~A--VlV~-e~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 143 VSPDESLNVISQLLEEHPA--VLVV-ENGKVVGIITKADIMKLLA 184 (187)
T ss_pred CCCCCCHHHHHHHHhhCCe--EEEE-eCCceEEEEeHHHHHHHHh
Confidence 9999999999998888774 7677 6899999999999998543
No 8
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.66 E-value=2e-15 Score=113.65 Aligned_cols=110 Identities=24% Similarity=0.314 Sum_probs=96.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhc-CCCccccccccccccCceeecCCCCHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ-NLPADSTLVEKVMTPNPECATIDTPIVD 230 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~-~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (308)
.+.+++++.++.++++.|.+.+.+.+||++ +|+++|++|..|++ +.... .......++.++|..++.++.+++++.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~-~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 80 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVV-RQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHD 80 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHH-HHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHH
Confidence 377899999999999999999999999998 88999999999996 44432 2222245788999999999999999999
Q ss_pred HHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 231 ~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
+++.|..++...+||+|++|+++|+||..|+++
T Consensus 81 a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 81 VWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred HHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 999999999999999998899999999999974
No 9
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.66 E-value=2.6e-15 Score=112.95 Aligned_cols=110 Identities=28% Similarity=0.343 Sum_probs=96.6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (308)
++.++.++.++.++++.|.+.+.+.+||++ + ++++|+++..|+++.+..........++.++|..++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 81 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKY 81 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHH
Confidence 578899999999999999988999999998 6 89999999999964455443333345788999889999999999999
Q ss_pred HHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 231 ~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
+++.|.+.+...+||+|+ |+++|+||..|+++
T Consensus 82 ~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 82 CARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred HHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 999999999999999987 99999999999985
No 10
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.66 E-value=1.4e-15 Score=138.77 Aligned_cols=162 Identities=15% Similarity=0.164 Sum_probs=129.4
Q ss_pred cCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeC--CEEEEEeeHHHHHHHHHhcCCCcccccccccccc
Q 021709 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE--NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP 217 (308)
Q Consensus 140 ~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~ 217 (308)
...+++++|+++.++.+++.++++.++.+.+.+++++++||.++ +.++|+++.+|++ ..... ...++.+++.
T Consensus 189 ~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll-~~~~~----~~~~l~~~~~- 262 (408)
T TIGR03520 189 GNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLL-PHLNK----KNFDWQSLLR- 262 (408)
T ss_pred CCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHH-hHhcc----CCCCHHHHcC-
Confidence 45678999998889999999999999999999999999999983 5899999999997 33322 1235677775
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcCCCCCCCc-----------chhhhHHH
Q 021709 218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNE-----------AASTMMQK 286 (308)
Q Consensus 218 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 286 (308)
++.++++++++.++++.|.+++.+.++|+|+.|..+|+||..||++.+++....+.+.... .......+
T Consensus 263 ~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~d~~~~~i~~~~~~~~~v~G~~~l~ 342 (408)
T TIGR03520 263 EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKIDDNNYVFEGKTSLK 342 (408)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEeCCCeEEEEeccCHH
Confidence 6889999999999999999999999999999999999999999999998765543221111 12223345
Q ss_pred HHHhhccCCCC-----Cchhhhcccc
Q 021709 287 FWDSAMALSPN-----DDEEDNRRFY 307 (308)
Q Consensus 287 ~~~~~~~~~~~-----~~~~~~~~~~ 307 (308)
..+..+.+++. .++|+|.+||
T Consensus 343 ~l~~~l~~~~~~~~~~~~~~~Tl~G~ 368 (408)
T TIGR03520 343 DFYKILKLEEDMFDEVKGEAETLAGF 368 (408)
T ss_pred HHHHHhCCCccccCCcCCCCccHHHH
Confidence 66666777642 4589999987
No 11
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.65 E-value=1.8e-15 Score=115.06 Aligned_cols=122 Identities=18% Similarity=0.300 Sum_probs=104.4
Q ss_pred cccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhh
Q 021709 39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 118 (308)
Q Consensus 39 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (308)
...+++.+|.++++.+.+++++.++.++|.+++++.+||+++++++|-++..++.+..++.++.
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e~---------------- 126 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGMES---------------- 126 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccccc----------------
Confidence 3567899999999999999999999999999999999999999999999999999887654422
Q ss_pred hccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHH
Q 021709 119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR 198 (308)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~ 198 (308)
....++.++|. ..++++++++++..+.+++..+ .++.|+++|+++|++|+.|++ +
T Consensus 127 --------------------i~~~~vr~vM~--e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e~G~~vGIITk~DI~-k 181 (187)
T COG3620 127 --------------------IRSLRVREVMG--EPFPTVSPDESLNVISQLLEEH--PAVLVVENGKVVGIITKADIM-K 181 (187)
T ss_pred --------------------hhhhhHHHHhc--CCCCcCCCCCCHHHHHHHHhhC--CeEEEEeCCceEEEEeHHHHH-H
Confidence 12234778887 8899999999999998888754 568888999999999999996 5
Q ss_pred HHh
Q 021709 199 VIS 201 (308)
Q Consensus 199 ~~~ 201 (308)
+++
T Consensus 182 ~~~ 184 (187)
T COG3620 182 LLA 184 (187)
T ss_pred HHh
Confidence 543
No 12
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.65 E-value=3.2e-15 Score=111.97 Aligned_cols=108 Identities=23% Similarity=0.268 Sum_probs=94.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (308)
++.+++++.++.++.+.|.+.+.+.++|++ +++++|+++..|+. +.... .....++.++|...+.++.+++++.++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~--~~~~~~v~~~~~~~~~~v~~~~~l~~a 78 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLL-EIGPN--DYETLKVCEVYIVPVPIVYCDSKVTDL 78 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHH-hhccc--cccccChhheeecCCcEECCCCcHHHH
Confidence 477899999999999999988899999998 78999999999995 43211 111346888998889999999999999
Q ss_pred HHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
+++|.+++.+.+||+|++|+++|+||..|+++
T Consensus 79 l~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 79 LRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred HHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 99999999999999998899999999999985
No 13
>PRK11573 hypothetical protein; Provisional
Probab=99.64 E-value=3.1e-15 Score=136.55 Aligned_cols=167 Identities=14% Similarity=0.109 Sum_probs=133.9
Q ss_pred cCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee--CCEEEEEeeHHHHHHHHHhcCCCcccccccccccc
Q 021709 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP 217 (308)
Q Consensus 140 ~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~ 217 (308)
...++.++|.|+.++..++.+.++.++.+.+.+++++++||.+ -+.++|++..+|++. ....+.......+.+++ +
T Consensus 185 ~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~-~~~~~~~~~~~~l~~~~-r 262 (413)
T PRK11573 185 EKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYR-LMTEKKEFTKENMLRAA-D 262 (413)
T ss_pred CCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHH-HhhccCcCCHHHHHhhc-c
Confidence 4567899999999999999999999999999999999999987 378999999999974 33222211112233444 4
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcCCCCCCC-c-----------chhhhHH
Q 021709 218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNN-E-----------AASTMMQ 285 (308)
Q Consensus 218 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~~~~~~~-~-----------~~~~~~~ 285 (308)
++.+|+++.++.++++.|.+++.+-..|+|+.|...|+||..||++.+++..+...+... . +......
T Consensus 263 ~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l 342 (413)
T PRK11573 263 EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTANV 342 (413)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcccCcccccceEEecCCEEEEEeeeEH
Confidence 789999999999999999999999999999999999999999999999987766533211 1 1222335
Q ss_pred HHHHhhccCCCCCchhhhccccC
Q 021709 286 KFWDSAMALSPNDDEEDNRRFYA 308 (308)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~ 308 (308)
+..+..+.+++++++|+|.+||.
T Consensus 343 ~d~~~~l~~~l~~~~~~Tl~G~i 365 (413)
T PRK11573 343 REINKAFNWHLPEDDARTVNGVI 365 (413)
T ss_pred HHHHHHhCCCCCCCCCeeHHHHH
Confidence 67777788888888999999973
No 14
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.64 E-value=5.4e-15 Score=112.32 Aligned_cols=110 Identities=14% Similarity=0.189 Sum_probs=91.1
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCC-ccccccc------cccccCceeecC
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP-ADSTLVE------KVMTPNPECATI 224 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~-~~~~~v~------~~~~~~~~~v~~ 224 (308)
++.++++++++.++.+.|.+++.+++||++ +|+++|+++.+|++ .+...+.. ....++. +.|..++.++.+
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVI-NLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSP 80 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHH-HHHhcCccccccCCHHHHHhhcccCCCCCeEEcC
Confidence 578899999999999999999999999998 88999999999996 44433221 1111222 233456789999
Q ss_pred CCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 225 DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
++++.++++.|.+++.+.+||+|++|+++|+||+.|+++
T Consensus 81 ~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 81 DDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred CCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 999999999999999999999998899999999999985
No 15
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.64 E-value=3.2e-15 Score=109.49 Aligned_cols=93 Identities=22% Similarity=0.267 Sum_probs=84.5
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (308)
++.++++++++.++.+.|.+++.+++||++ + ++++|++|..|+. +... +.++.+++++.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~-~~~~-----------------~~~v~~~~~l~~ 63 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFI-LILR-----------------LVSIHPERSLFD 63 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHh-hhee-----------------eEEeCCCCcHHH
Confidence 478999999999999999999999999998 4 7999999999996 3211 778999999999
Q ss_pred HHHHHHhCCCCEEEEECCC-CcEEEEEEhhHHHH
Q 021709 231 ALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITH 263 (308)
Q Consensus 231 ~~~~~~~~~~~~l~Vvd~~-~~~iGiit~~di~~ 263 (308)
+++.|.+++.+++||+|++ |+++|+||.+|+++
T Consensus 64 a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 64 AALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred HHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 9999999999999999987 89999999999985
No 16
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.63 E-value=7.4e-15 Score=111.23 Aligned_cols=110 Identities=21% Similarity=0.259 Sum_probs=94.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCcccccccccccc--CceeecCCCCHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIV 229 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~ 229 (308)
++.+++++.++.++++.|..++.+.+||++ +++++|++|..|+++... ........++.++|.+ ++.+++.++++.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~ 80 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI-GGADLQKVPVGVIMTRMPNITTTTPEESVL 80 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH-cCCCccCCCHHHHhCCCCCcEEECCCCcHH
Confidence 478899999999999999988999999998 789999999999964433 3333334567788874 788999999999
Q ss_pred HHHHHHHhCCCCEEEEECCC---CcEEEEEEhhHHHH
Q 021709 230 DALHIMHDGKFLHLPVVDRD---GDVVDVVDVIHITH 263 (308)
Q Consensus 230 ~~~~~~~~~~~~~l~Vvd~~---~~~iGiit~~di~~ 263 (308)
+++++|.+++.+.+||+|++ |+++|+||..||++
T Consensus 81 ~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 81 EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 99999999999999999877 69999999999874
No 17
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.62 E-value=5.1e-15 Score=123.55 Aligned_cols=129 Identities=20% Similarity=0.326 Sum_probs=109.9
Q ss_pred CcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 021709 38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (308)
Q Consensus 38 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~ 116 (308)
..+.+..++|+++++++++++++.+|..+|.+++++.+||+| +.+++|+|+++|++...-
T Consensus 242 ~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~------------------- 302 (382)
T COG3448 242 MGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHAR------------------- 302 (382)
T ss_pred hccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccC-------------------
Confidence 456789999999999999999999999999999999999998 478999999999975310
Q ss_pred hhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHH
Q 021709 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 195 (308)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl 195 (308)
..++..++ .+...+++.+|+ +++.++.++++..++.-.+.+.+.+++||+| +|+++|+||++|+
T Consensus 303 ------------~~p~qrlr-~~~~~~vk~imt--~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDl 367 (382)
T COG3448 303 ------------PSPFQRLR-FLRPPTVKGIMT--TPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDL 367 (382)
T ss_pred ------------cchHHHhh-ccCCCccccccc--CcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHH
Confidence 11222222 245577899998 7999999999999999999999999999999 9999999999999
Q ss_pred HHHHHh
Q 021709 196 LMRVIS 201 (308)
Q Consensus 196 ~~~~~~ 201 (308)
+ ..+.
T Consensus 368 i-aal~ 372 (382)
T COG3448 368 I-AALY 372 (382)
T ss_pred H-HHHH
Confidence 7 4443
No 18
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.62 E-value=1.3e-14 Score=108.76 Aligned_cols=111 Identities=58% Similarity=0.840 Sum_probs=96.6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (308)
++.++.++.++.++++.|.+.+.+.+||+++++++|+++..|++......+......++.++|...+.++.+++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEAL 81 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHHH
Confidence 47788999999999999998888899999889999999999996555544333322578889988899999999999999
Q ss_pred HHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
+.|..++..++||+|++|+++|+||..|++.
T Consensus 82 ~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 82 HLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred HHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 9999999999999998899999999999975
No 19
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.61 E-value=1.3e-14 Score=109.19 Aligned_cols=110 Identities=27% Similarity=0.397 Sum_probs=95.6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (308)
++.++.++.++.++.+.|.+.+.+.+||++ +|+++|+++..|+. ............++.++|...+.++..++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~ 80 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLL-RALEADEAGEPSAVDEVATPPLLTVHPDEPLAHA 80 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHH-HHHhcccccccccHHHhccCCceEECCCCCHHHH
Confidence 467889999999999999998999999999 79999999999996 5444333222345788888899999999999999
Q ss_pred HHHHHhCCCCEEEEECCC--CcEEEEEEhhHHHH
Q 021709 232 LHIMHDGKFLHLPVVDRD--GDVVDVVDVIHITH 263 (308)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~--~~~iGiit~~di~~ 263 (308)
++.|..++...+||+|++ |+++|+||..||++
T Consensus 81 l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 81 LDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred HHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 999999999999999987 89999999999986
No 20
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.61 E-value=4.2e-15 Score=113.74 Aligned_cols=112 Identities=17% Similarity=0.128 Sum_probs=95.8
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHH
Q 021709 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (308)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (308)
+++.+++++.++.++++.|.+++.+.+||++ +++++|+++..|++..+...... ...++.++|.+++.++.+++++.+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~-~~~~v~~im~~~~~~v~~~~~~~~ 80 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQ-PSDPVSKALYKQFKRVNKNDTLGK 80 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccC-CCCcHHHHhhccceecCCCCCHHH
Confidence 4688899999999999999999999999998 78999999999997444443333 356899999999999999999999
Q ss_pred HHHHHH---------hCCCCEEEEECCCCcEEEEEEhhHHHHH
Q 021709 231 ALHIMH---------DGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (308)
Q Consensus 231 ~~~~~~---------~~~~~~l~Vvd~~~~~iGiit~~di~~~ 264 (308)
+.+++. ..+.+.+||+|++|+++|+||..||+++
T Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 81 LSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred HHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 999653 3356778899988999999999999975
No 21
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.60 E-value=9.2e-15 Score=130.48 Aligned_cols=123 Identities=22% Similarity=0.279 Sum_probs=105.8
Q ss_pred cCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccC
Q 021709 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN 218 (308)
Q Consensus 140 ~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~ 218 (308)
...+++++|.+.+++.++++++++.++.+.|.+++.+.+||++ +|+++|++|..|+. +....+......++.++|.++
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~-~~~~~~~~~~~~~v~~im~~~ 278 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLR-RVFDMGIDLRQASIADVMTPG 278 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHH-HHHhcCCCcccCCHHHhcCCC
Confidence 3445789997223899999999999999999988888888888 89999999999994 665544333346899999999
Q ss_pred ceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHH
Q 021709 219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (308)
Q Consensus 219 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~ 264 (308)
+.++.+++++.++++.|.+++.+.+||+| +|+++|+||+.||+++
T Consensus 279 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 279 GIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred CEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 99999999999999999999999999997 6899999999999974
No 22
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.60 E-value=2.1e-14 Score=132.49 Aligned_cols=138 Identities=22% Similarity=0.292 Sum_probs=118.8
Q ss_pred cCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHH
Q 021709 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVI 200 (308)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~ 200 (308)
-|..+.|.+...+...+.....+..++|. .+++++.+++++.+++++|.+.+.+.+||+++++++|++|.+|+. .
T Consensus 67 GGigvIh~n~~i~~qae~v~~VKv~eim~--~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~-~-- 141 (475)
T TIGR01303 67 GGIVILPQDLPIPAVKQTVAFVKSRDLVL--DTPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLL-G-- 141 (475)
T ss_pred CCEEEEeCCCCHHHHHHHHhhcchhhccc--cCCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhh-c--
Confidence 36667777766666666666777778887 789999999999999999999999999999888999999999993 2
Q ss_pred hcCCCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709 201 SQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (308)
Q Consensus 201 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~ 267 (308)
... ..++.++|..++.++++++++.+++++|.+++.+.+||+|++|+++|+||.+||++....
T Consensus 142 ---~~~-~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 142 ---VDR-FTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY 204 (475)
T ss_pred ---CCC-CCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC
Confidence 222 357999999999999999999999999999999999999989999999999999985553
No 23
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.60 E-value=2.7e-14 Score=106.96 Aligned_cols=111 Identities=32% Similarity=0.478 Sum_probs=97.1
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (308)
++.++.+++++.++.+.|.+.+.+.+||+++|+++|+++..|++.+....+......++.++|...+.++.+++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 81 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEAA 81 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHHH
Confidence 47789999999999999999899999999889999999999996455544444333348899988999999999999999
Q ss_pred HHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
+.|...+.+++||+|++|+++|+||..|+++
T Consensus 82 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 82 RLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred HHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 9999999999999998899999999999975
No 24
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.60 E-value=2.3e-14 Score=107.25 Aligned_cols=110 Identities=33% Similarity=0.479 Sum_probs=94.8
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (308)
++.++.++.++.++.+.|.+.+++.+||++ +++++|+++..|++..+..........++.++|...+.++..+.++.++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 81 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEA 81 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHH
Confidence 467789999999999999988999999998 6899999999999644433322222457888998889999999999999
Q ss_pred HHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
++.|.+.+.+.+||+++ |+++|+||..||++
T Consensus 82 l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 82 MALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred HHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 99999999999999986 99999999999975
No 25
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.60 E-value=1.8e-14 Score=109.86 Aligned_cols=111 Identities=27% Similarity=0.417 Sum_probs=96.7
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCC----------ccccccccccccCce
Q 021709 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP----------ADSTLVEKVMTPNPE 220 (308)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~----------~~~~~v~~~~~~~~~ 220 (308)
+++.++.++.++.++.+.|.+.+++.+||++ +|+++|+++..+++ ........ ....++.++|.+.+.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLL-RHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV 80 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHH-hhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence 5688899999999999999998999999998 79999999999996 44332211 124468889989999
Q ss_pred eecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 221 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
++.+++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 81 TVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred eeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 9999999999999999999999999998999999999999985
No 26
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.60 E-value=2.8e-14 Score=107.04 Aligned_cols=109 Identities=27% Similarity=0.412 Sum_probs=95.4
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (308)
++.++.++.++.++.+.|.+.+.+.++|++ +++++|+++..|++ +........ ..++.++|...+.++.+++++.++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~~~~~-~~~v~~~~~~~~~~v~~~~~l~~~ 80 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIR-RALLKGLSL-DDPVSEVMNRNPITAKVGSSREEI 80 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHH-HHHhcCCCc-CCCHHHhhcCCCEEEcCCCCHHHH
Confidence 467789999999999999988999999998 78999999999996 444333333 346889998889999999999999
Q ss_pred HHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
++.|..++.+.+||+|++|+++|+||..||+.
T Consensus 81 ~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 81 LALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred HHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 99999999999999998899999999999974
No 27
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.60 E-value=1.8e-14 Score=133.07 Aligned_cols=136 Identities=25% Similarity=0.282 Sum_probs=116.3
Q ss_pred CCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHH
Q 021709 122 GTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI 200 (308)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~ 200 (308)
|..+.+.+...+...+.+...++.++|. .++.++++++++.++++.|.+++++.+||++ +++++|+||.+|+. ..
T Consensus 69 GiGvih~nl~~~~q~~~l~~VKv~~iMi--~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~-~~- 144 (479)
T PRK07807 69 GLVVLPQDIPIDVVAEVVAWVKSRDLVF--DTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCA-GV- 144 (479)
T ss_pred CceEeeCCCCHHHHHHHHhhcccccccc--cCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHh-cC-
Confidence 4445555555555556666667788887 7899999999999999999999999999998 88999999999993 21
Q ss_pred hcCCCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709 201 SQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266 (308)
Q Consensus 201 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~ 266 (308)
.. ..++.++|..++.++++++++.+++++|.+++.+.+||+|++|+++|+||..||++...
T Consensus 145 ----~~-~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~ 205 (479)
T PRK07807 145 ----DR-FTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATI 205 (479)
T ss_pred ----cc-CCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 22 34789999999999999999999999999999999999998999999999999998654
No 28
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.60 E-value=2.1e-14 Score=108.06 Aligned_cols=110 Identities=25% Similarity=0.345 Sum_probs=93.0
Q ss_pred ceeEeCCCCcHHHHHHHHHHcC-CcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCC--CCHH
Q 021709 153 KVVTISPTDTVLMATKKMLELR-LSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATID--TPIV 229 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~-~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~--~~l~ 229 (308)
++.+++++.++.++++.|.+.+ .+.++|.++++++|+++..|++ +...........++.++|..++.++.++ +++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l~ 80 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIV-RLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIF 80 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHH-HHHhcCCCccccCHHHhcCCCcEEEecccccCHH
Confidence 4677899999999999998877 6677877788999999999996 5544433322357888998888888887 7899
Q ss_pred HHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 230 DALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 230 ~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
++++.|.+++...+||+|++|+++|+||+.|+++
T Consensus 81 ~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 81 TALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred HHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 9999999999999999998899999999999986
No 29
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=3.6e-14 Score=106.21 Aligned_cols=110 Identities=25% Similarity=0.391 Sum_probs=93.0
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (308)
.+.++.++.++.++.+.|.+++.+.++|.++++++|+++..|+++............++.++|...+.++..++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 81 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEVR 81 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHHH
Confidence 46788999999999999988788778777789999999999996443322222224578899988899999999999999
Q ss_pred HHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
++|..++...+||+| +|+++|+||..|+++
T Consensus 82 ~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 82 RLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred HHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 999999999999998 699999999999985
No 30
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.59 E-value=5e-14 Score=105.10 Aligned_cols=109 Identities=31% Similarity=0.481 Sum_probs=96.0
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (308)
++.+++++.++.++.+.|.+.+.+.+||+++++++|+++..|++ +....... ...++.++|.+++.++.+++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~l~~~l 79 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDIL-RLLASGPD-LQTPVGEVMSSPLLTVPADTSLYDAR 79 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHH-HHHhcCCC-CCcCHHHhcCCCceEECCCCCHHHHH
Confidence 46789999999999999998888999999889999999999995 55444332 24578899988999999999999999
Q ss_pred HHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
+.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 80 ~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 80 QLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred HHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 9999999999999998899999999999975
No 31
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.59 E-value=1.5e-14 Score=128.95 Aligned_cols=122 Identities=19% Similarity=0.275 Sum_probs=105.4
Q ss_pred CCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCc
Q 021709 141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219 (308)
Q Consensus 141 ~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~ 219 (308)
..++.++|.+..++.+++++.++.++.+.|.+.+.+.+||++ +|+++|++|..|+. +.+..+... ..++.++|.+++
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~-~~~~~~~~~-~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLR-RWLVGGGAL-TTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHH-HHHhCCCCc-CCcHHHhcCCCC
Confidence 345888887322399999999999999999888889999999 88999999999995 554433322 456899999999
Q ss_pred eeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHH
Q 021709 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (308)
Q Consensus 220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~ 264 (308)
.++.+++++.++++.|..++...+||+|++|+++|+||+.|++++
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 999999999999999999999999999988999999999999975
No 32
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.59 E-value=2.8e-14 Score=107.00 Aligned_cols=109 Identities=20% Similarity=0.232 Sum_probs=94.8
Q ss_pred eeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (308)
Q Consensus 154 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (308)
+..+.++.++.++++.|.+.+.+.+||++ +++++|+++..|+++.... .......++.++|..++.++..++++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~-~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALE-SEELKDAKVREVMNSPVITIDANDSIAKAR 81 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhh-hhhhcCCcHHHhccCCceEECCCCcHHHHH
Confidence 67789999999999999999999999998 7899999999999633333 222234578889988999999999999999
Q ss_pred HHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
+.|..++...+||+|++|+++|++|..|+++
T Consensus 82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 82 WLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred HHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 9999999999999998899999999999974
No 33
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=3.3e-14 Score=108.41 Aligned_cols=110 Identities=20% Similarity=0.300 Sum_probs=90.1
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C-CEEEEEeeHHHHHHHHHhcCCC-----c---cccccccccccCceee
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLP-----A---DSTLVEKVMTPNPECA 222 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~-----~---~~~~v~~~~~~~~~~v 222 (308)
++.++++++++.++++.|.+.+++++||++ + ++++|+++..|+++........ . ....+...|..++.++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISI 81 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceEe
Confidence 577899999999999999988899999998 6 8999999999996433222111 0 0012234677788999
Q ss_pred cCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHH
Q 021709 223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT 262 (308)
Q Consensus 223 ~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~ 262 (308)
.+++++.++++.|.+++.+++||+|++|+++|+||..||-
T Consensus 82 ~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 82 NGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred CCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 9999999999999999999999999889999999999974
No 34
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.59 E-value=8.1e-14 Score=126.17 Aligned_cols=120 Identities=27% Similarity=0.356 Sum_probs=109.5
Q ss_pred CCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCce
Q 021709 142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE 220 (308)
Q Consensus 142 ~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~ 220 (308)
+.+.+++. .+++++++.+++.+|..+|.+.+.+++.+++ ++...||||.+|+..+.++.+.+. ..+++++|+.++.
T Consensus 149 trv~~~~~--~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-~~~V~evmT~p~~ 225 (610)
T COG2905 149 TRVGEVKT--LPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-TQKVSEVMTSPVI 225 (610)
T ss_pred HHHHHHhc--CCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-ccchhhhhccCce
Confidence 34566666 7899999999999999999999999888888 999999999999988888887776 6799999999999
Q ss_pred eecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709 221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265 (308)
Q Consensus 221 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~ 265 (308)
+++.++.+.+|+-.|..++++++||++ +|+++|+||.+||++..
T Consensus 226 svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~ 269 (610)
T COG2905 226 SVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLF 269 (610)
T ss_pred eecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhh
Confidence 999999999999999999999999996 79999999999999743
No 35
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.59 E-value=2.8e-14 Score=106.99 Aligned_cols=111 Identities=28% Similarity=0.390 Sum_probs=97.2
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHH
Q 021709 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (308)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (308)
.++.++.++.++.++.+.|.+.+.+.+||++ +++++|+++..++. +++.........++.++|.+.+.++..++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~-~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 80 (114)
T cd04604 2 DALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLR-RALEKGLDILTLPVADVMTRNPKTIDPDALAAE 80 (114)
T ss_pred CcccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHH-HHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence 3567789999999999999888889999998 78999999999995 555544443345789999989999999999999
Q ss_pred HHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 231 ~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
+++.|...+...+||+|++|+++|+||..||++
T Consensus 81 ~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 81 ALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred HHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 999999999999999998899999999999985
No 36
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.58 E-value=2.8e-14 Score=106.96 Aligned_cols=110 Identities=21% Similarity=0.286 Sum_probs=96.8
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (308)
++.+++++.++.++.+.|.+.+++.+||++ +++++|+++..|+. +...........++.++|.+.+.++.+++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 80 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIR-EILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDA 80 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHH-HHHhcccccccEEHHHhccCCCcEEcCCCCHHHH
Confidence 577899999999999999998999999999 78999999999995 5554433332357889999999999999999999
Q ss_pred HHHHHhCCCCEEEEECC-CCcEEEEEEhhHHHH
Q 021709 232 LHIMHDGKFLHLPVVDR-DGDVVDVVDVIHITH 263 (308)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~-~~~~iGiit~~di~~ 263 (308)
++.|...+.+.+||+|+ +|+++|++|..|++.
T Consensus 81 ~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 81 LKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred HHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 99999999999999987 799999999999975
No 37
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.58 E-value=5.6e-14 Score=104.98 Aligned_cols=109 Identities=35% Similarity=0.493 Sum_probs=95.0
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (308)
++.+++++.++.++.+.|.+.+.+.+||+++++++|+++..+++..+...+... ..++.++|..++.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~-~~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAEGLDP-DTPVSEVMTAPPITIPPDATVFEAL 80 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhccCCCc-cCCHHHHhCCCCeEECCCCcHHHHH
Confidence 577899999999999999988899999998899999999999964444333222 3578889988999999999999999
Q ss_pred HHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
+.|.+++..++||+++ |+++|++|..|+++
T Consensus 81 ~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 81 LLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred HHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 9999999999999986 99999999999984
No 38
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=3e-14 Score=106.43 Aligned_cols=108 Identities=25% Similarity=0.368 Sum_probs=94.8
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (308)
++.++.++.++.++++.|.+.+.+.+||++ +++++|+++..++. +.+..... ..++.++|..++.++..++++.++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~-~~~~~~~~--~~~v~~~~~~~~~~i~~~~~~~~~ 78 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLI-RALAEGGP--DAPVRGVMRRDFPTVSPSATLDAV 78 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHH-HHHHhcCC--CCcHHHHhcCCCcEECCCCcHHHH
Confidence 467889999999999999888889999999 68999999999996 54443322 347888998899999999999999
Q ss_pred HHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
++.|..++...+||+|++|+++|++|..|+.+
T Consensus 79 ~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 79 LRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred HHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999998799999999999975
No 39
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=3.4e-14 Score=108.88 Aligned_cols=110 Identities=21% Similarity=0.194 Sum_probs=91.6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCcccc-------------ccccccccC
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADST-------------LVEKVMTPN 218 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~-------------~v~~~~~~~ 218 (308)
.+.++++++++.++++.|.+++++.+||++ +|+++|+++..|++ ............ .....+..+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLK-GLLLSPDDLLLYRTITFKELSEKFTDSDGVKSRP 80 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhh-hhhcCcchhhcccchhhhhhhhhcccccccccCC
Confidence 477899999999999999988999999998 78999999999995 444322221111 122456678
Q ss_pred ceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 219 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
+.++++++++.++++.|.+++.+.+||+|++|+++|+||..||++
T Consensus 81 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 81 LITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred CeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 899999999999999999999999999998899999999999985
No 40
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.57 E-value=4.3e-14 Score=107.94 Aligned_cols=110 Identities=32% Similarity=0.388 Sum_probs=95.1
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C-CEEEEEeeHHHHHHHHHhcCCCc-----------cccccccccccCc
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPA-----------DSTLVEKVMTPNP 219 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~~-----------~~~~v~~~~~~~~ 219 (308)
++.++.++.++.+++++|.+.+.+.+||++ + |+++|+++..|++ ..+...... ...++.+++...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDIL-KYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV 80 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHH-HHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence 467889999999999999998999999998 5 8999999999996 544332211 1346788888899
Q ss_pred eeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
.++++++++.++++.|.+.+.+.+||+|++|+++|+||..||++
T Consensus 81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 81 ITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 99999999999999999999999999998899999999999986
No 41
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.57 E-value=3.6e-14 Score=106.84 Aligned_cols=108 Identities=27% Similarity=0.285 Sum_probs=92.0
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCcc-----ccccccccccCceeecCCC
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPAD-----STLVEKVMTPNPECATIDT 226 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~-----~~~v~~~~~~~~~~v~~~~ 226 (308)
++.++++++++.++++.|.+.+++.+||++ +++++|+++..|++ +......... ..++.++|.+.+.++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~ 80 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDIL-WKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDA 80 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHH-HHhhccCchhHHHHhCCcHHHHhcCCCceecCCC
Confidence 477899999999999999999999999998 78999999999996 4443222111 3468888988999999999
Q ss_pred CHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 227 PIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 227 ~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
++.++++.|.+.+ .+||+|++|+++|+||..|+++
T Consensus 81 ~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 81 DIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred CHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 9999999998765 5999998899999999999986
No 42
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.57 E-value=9.9e-14 Score=103.45 Aligned_cols=108 Identities=26% Similarity=0.341 Sum_probs=95.2
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (308)
++.+++++.++.++++.|.+.+++.+||+++++++|+++..|++ +....+.. ..++.+++...+.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~-~~~~~~~~--~~~v~~~~~~~~~~v~~~~~~~~~~ 78 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIA-HAIARGLE--LAKVKDVMTKDVITIDEDEQLYDAI 78 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHH-HHHhcccc--ccCHHHHhcCCceEECCCCCHHHHH
Confidence 57789999999999999999899999999888999999999996 55444332 2568888888999999999999999
Q ss_pred HHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
+.|...+.+.+||+|++|+++|+||..|+++
T Consensus 79 ~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 79 RLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred HHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 9999999999999998899999999999975
No 43
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.57 E-value=7.6e-14 Score=104.40 Aligned_cols=109 Identities=30% Similarity=0.511 Sum_probs=95.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (308)
++.++.++.++.++.+.|.+.+.+.+||++ +++++|+++..|++ +.+..+... ..++.++|..++.++..++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~-~~~~~~~~~-~~~v~~~~~~~~~~v~~~~~~~~~ 79 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIV-RAVAAGIDL-DTPVSEIMTRDLVTVDPDEPVAEA 79 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHH-HHHhccCCC-ccCHHHhccCCCEEECCCCcHHHH
Confidence 467889999999999999988999999998 79999999999996 444433322 347888988899999999999999
Q ss_pred HHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
++.|.+++...+||+|++|+++|++|..|+++
T Consensus 80 ~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 80 AKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred HHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 99999999999999998899999999999975
No 44
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57 E-value=4.7e-14 Score=104.97 Aligned_cols=105 Identities=30% Similarity=0.291 Sum_probs=94.2
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHH
Q 021709 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (308)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (308)
.++.++++++++.++.+.|.+.+.+.+||++ +|+++|+++..+++ .. . ...++.++|...+.++++++++.+
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~-----~-~~~~v~~~~~~~~~~v~~~~~l~~ 74 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVA-GK-----D-PDTTIEKVMTKNPITVNPKTSVAS 74 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHh-cc-----c-ccccHHHHhcCCCeEECCCCCHHH
Confidence 4688899999999999999988888999998 79999999999995 21 1 134788899889999999999999
Q ss_pred HHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 231 ~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
+++.|..++...+||+|++|+++|++|..|+++
T Consensus 75 ~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 75 VAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred HHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 999999999999999999999999999999985
No 45
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.57 E-value=1.1e-13 Score=103.49 Aligned_cols=110 Identities=30% Similarity=0.459 Sum_probs=94.2
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (308)
++.+++++.++.++++.|.+.+.+.+||+++++++|+++..|++..+..........++.++|.+++.++.+++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 81 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEAA 81 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHHH
Confidence 46778999999999999998889999999966999999999997444433222224578889988899999999999999
Q ss_pred HHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
++|.+.+...+||+|++ +++|+||..|+++
T Consensus 82 ~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 82 KLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred HHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 99999999999999864 9999999999974
No 46
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57 E-value=9.8e-14 Score=103.51 Aligned_cols=108 Identities=23% Similarity=0.381 Sum_probs=95.8
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (308)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (308)
.++.+++.+.++.++.+.|.+.+.+.+||+++++++|+++..|+. +...... ...++.++|...+.++..++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~-~~~~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~ 78 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVE-KALRHGL--GHAPVKDYMSTDVVTVPPDTPLSEV 78 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHH-HHHhccc--ccCcHHHHhcCCCEEECCCCcHHHH
Confidence 467889999999999999998888999999888999999999995 5544333 2457889999999999999999999
Q ss_pred HHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
+++|.+++.+.+||+| +|+++|+||..|+++
T Consensus 79 ~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 79 QELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred HHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 9999999999999998 899999999999975
No 47
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.57 E-value=5.2e-14 Score=106.99 Aligned_cols=110 Identities=33% Similarity=0.428 Sum_probs=95.7
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCC---------ccccccccccccCceee
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP---------ADSTLVEKVMTPNPECA 222 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~---------~~~~~v~~~~~~~~~~v 222 (308)
++.++.+++++.++.+.|.+.+++.+||++ +|+++|+++..+++ +....... ....++.+++..++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v 80 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLL-RAALSSLSDNGEESLTKERDVPVAEVMKTDVLTV 80 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHH-HHhccccccccccccccccCcCHHHhhCCCCeEe
Confidence 577899999999999999999999999998 68999999999996 44433221 12457888998899999
Q ss_pred cCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 223 ~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
..++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 81 TPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999999999999998899999999999985
No 48
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.56 E-value=5.1e-14 Score=120.37 Aligned_cols=122 Identities=23% Similarity=0.244 Sum_probs=111.1
Q ss_pred CcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCcee
Q 021709 143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC 221 (308)
Q Consensus 143 ~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~ 221 (308)
.++++|.|..+...+.+++++.+..++..+.+.+++||+| ..+++|+||.+|+. +..+ +.++..+|+++|.+
T Consensus 189 ~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~------~~~~-~t~ieKVMtknp~t 261 (432)
T COG4109 189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVL------DKKP-STTIEKVMTKNPIT 261 (432)
T ss_pred eHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhh------cCCC-CccHHHHhccCCee
Confidence 4689998888899999999999999999999999999999 88999999999996 3333 67999999999999
Q ss_pred ecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcC
Q 021709 222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGN 271 (308)
Q Consensus 222 v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~ 271 (308)
+.+.+++..+.+.|..-++.-+||+|++++++|+||+.|+++++-...++
T Consensus 262 v~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~q 311 (432)
T COG4109 262 VRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQRQ 311 (432)
T ss_pred ecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999976544433
No 49
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.56 E-value=5.2e-14 Score=105.78 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=90.9
Q ss_pred ceeEeCCCCcHHHHHHHHHHcC-CcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCcccccccccccc--CceeecCCCCH
Q 021709 153 KVVTISPTDTVLMATKKMLELR-LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPI 228 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~-~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l 228 (308)
++.++++++++.++.+.|.+++ .+.+||++ +++++|+++..|++. ...... ...++.++|.. .+.++.+++++
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~-~~~~~~--~~~~v~~~~~~~~~~~~v~~~~~l 78 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRA-IPTSQW--AQTTVIQVMTPAAKLVTVLSEESL 78 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHH-HHHhhc--cccchhhhhcccccceEECCCCcH
Confidence 5778999999999999997665 88999998 789999999999964 433222 13467888864 35689999999
Q ss_pred HHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 229 VDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 229 ~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
.++++.|.+++.+.+||+|++|+++|++|..||++
T Consensus 79 ~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 79 AEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred HHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 99999999999999999998899999999999874
No 50
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.56 E-value=4.3e-14 Score=103.04 Aligned_cols=93 Identities=16% Similarity=0.262 Sum_probs=84.4
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (308)
++..+.+++++.++++.|.+.+.+.+||++ +|+++|+++..|+. ... .+.++.+++++.++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~-~~~-----------------~~~~v~~~~~l~~a 63 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLI-AKS-----------------EVVTATKRTTVSEC 63 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHh-cCC-----------------CcEEecCCCCHHHH
Confidence 577899999999999999989999999998 78999999999995 210 18889999999999
Q ss_pred HHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
++.|.+++.+.+||+|++|+++|+||..||++
T Consensus 64 ~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 64 AQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred HHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999998899999999999985
No 51
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=4.6e-14 Score=105.89 Aligned_cols=110 Identities=25% Similarity=0.346 Sum_probs=94.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcC-CCccccccccccccCceeecCCCCHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-LPADSTLVEKVMTPNPECATIDTPIVD 230 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~-~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (308)
++.+++++.++.++.+.|.+.+.+.+||++ +++++|+++..++++.+.... ......++.++|...+.++.+++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 81 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVD 81 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHHH
Confidence 467899999999999999988888999998 789999999999964443322 111245788899888999999999999
Q ss_pred HHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 231 ~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
+++.|.+++...+||+|+ |+++|+||..||++
T Consensus 82 ~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 82 LAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred HHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 999999999999999986 99999999999985
No 52
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.55 E-value=1.2e-13 Score=103.21 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=92.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (308)
++.+++++.++.++.+.|.+.+.+.+||++ + ++++|+++..+++ +........ .++..++ .++.++..++++.+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~-~~~~~~~~~--~~~~~~~-~~~~~v~~~~~l~~ 77 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLL-RALAEGEED--LDLRDLL-RPPLFVPESTPLDD 77 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHH-HHHHcCCCc--CCHHHHh-cCCeecCCCCcHHH
Confidence 578899999999999999988899999998 6 8999999999996 555433321 3566666 47889999999999
Q ss_pred HHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 231 ~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
+++.|..++.+++||+|++|+++|+||+.|+++
T Consensus 78 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 78 LLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred HHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 999999999999999998899999999999974
No 53
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.55 E-value=9.2e-14 Score=102.90 Aligned_cols=103 Identities=23% Similarity=0.289 Sum_probs=91.4
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (308)
++.+++++.++.++++.|.+.+.+.++|++ +|+++|+++..|++ +.. ..++.++|.+.+.++..++++.++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 73 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAA-RAS-------GGCCGDHAEPFKVTVSVDDDLRIV 73 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHH-Hhc-------ccchhhhcccCCEEECCCCCHHHH
Confidence 567889999999999999988889999998 79999999999995 331 124678888888889999999999
Q ss_pred HHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
++.|.+++...+||+|++|+++|+||..|+++
T Consensus 74 ~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 74 LSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred HHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999998899999999999985
No 54
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.55 E-value=1.7e-13 Score=102.20 Aligned_cols=107 Identities=33% Similarity=0.395 Sum_probs=94.4
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHH
Q 021709 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (308)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (308)
+++.++.++.++.++++.|.+++.+.+||++ +|+++|+++..+++ +...... .++.++|..++.++..++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~~~~~----~~~~~~~~~~~~~v~~~~~l~~ 76 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDIS-KAVARDK----KSVEDIMTRNVITATPDEPIDV 76 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHH-HHHhhCc----cCHHHhcCCCCeEECCCCcHHH
Confidence 4678899999999999999988999999998 78999999999996 4443222 2478888889999999999999
Q ss_pred HHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 231 ~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
+++.|.+++...+||++++|+++|+||+.||++
T Consensus 77 ~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 77 AARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 999999999999999998999999999999964
No 55
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=7.9e-14 Score=106.86 Aligned_cols=111 Identities=19% Similarity=0.290 Sum_probs=90.7
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHH-----HHhcCCCccccccccccccCceee----
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR-----VISQNLPADSTLVEKVMTPNPECA---- 222 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~-----~~~~~~~~~~~~v~~~~~~~~~~v---- 222 (308)
++.++.++.++.++++.|.+.+.+.+||++ +|+++|+++..|+... +..........+++++|.+++..+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~ 81 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDL 81 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccH
Confidence 477899999999999999988999999998 7899999999999531 222112222457889997655443
Q ss_pred --cCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEEhhHHHH
Q 021709 223 --TIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITH 263 (308)
Q Consensus 223 --~~~~~l~~~~~~~~~~~~~~l~Vvd~~-~~~iGiit~~di~~ 263 (308)
.+++++.++++.|.+++.+.+||+|++ |+++|+||+.||++
T Consensus 82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 368899999999999999999999986 79999999999985
No 56
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=8e-14 Score=107.72 Aligned_cols=109 Identities=28% Similarity=0.356 Sum_probs=93.9
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccc--------------------ccc
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS--------------------TLV 211 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~--------------------~~v 211 (308)
++.++.++.++.++++.|.+.+.+.+||++ +++++|+++..+++ +.......... .++
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLI-RKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV 80 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHH-HHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence 477899999999999999988999999998 78999999999996 44433222111 167
Q ss_pred ccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 212 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
.++|.+++..+..++++.++++.|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus 81 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 81 EEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred HHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 8888888999999999999999999999999999997 99999999999986
No 57
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.55 E-value=1.7e-13 Score=102.38 Aligned_cols=109 Identities=20% Similarity=0.228 Sum_probs=93.9
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (308)
++++++++.++.++.+.|.+.+.+.++|++++++.|+++..|++ ............++.++|.+++.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~-~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLL-DAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNAL 80 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHH-HHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHHHH
Confidence 46778999999999999998888899999878899999999996 44433322224578889988899999999999999
Q ss_pred HHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
+.|.+++...+||+|+ |+++|+||..|+++
T Consensus 81 ~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 81 LLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred HHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 9999999999999984 89999999999985
No 58
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.54 E-value=1.2e-13 Score=102.74 Aligned_cols=106 Identities=25% Similarity=0.339 Sum_probs=93.7
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHH
Q 021709 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (308)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (308)
.++..++++.++.++++.|.+.++..+||++ +++++|+++..|++ ..... ..++.++|...+.++++++++.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~-----~~~v~~~~~~~~~~v~~~~~~~~ 75 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLE-QAYKE-----AKSLEDIMLEDVFTVQPDASLRD 75 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHH-HHhhc-----CCcHhHhhcCCceEECCCCcHHH
Confidence 4578899999999999999988999999998 78999999999995 43221 23678888889999999999999
Q ss_pred HHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 231 ~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
+++.|...+..++||+|++|+++|++|..|+++
T Consensus 76 ~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 76 VLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred HHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 999999999999999998899999999999974
No 59
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.54 E-value=1.8e-13 Score=102.10 Aligned_cols=109 Identities=33% Similarity=0.367 Sum_probs=94.7
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (308)
++..+.++.++.++.+.|.+.+.+.+||+++++++|+++..|+. +........ ..++.++|..++.++..++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~-~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIR-RVPAEGREA-TVLVGDVMTRDPVTASPDETLRDAL 79 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHH-HHHhcCccc-ccCHHHhccCCCeEECCCCCHHHHH
Confidence 57789999999999999998889999999889999999999996 444332221 2356788888999999999999999
Q ss_pred HHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
+.|.+++.+.+||+|++|+++|+||..||++
T Consensus 80 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 80 KRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred HHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 9999999999999998899999999999985
No 60
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.54 E-value=1.3e-13 Score=107.09 Aligned_cols=109 Identities=23% Similarity=0.370 Sum_probs=93.8
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCc-----------------------cc
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA-----------------------DS 208 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~-----------------------~~ 208 (308)
++.++.+++++.++++.|.+.+.+.+||++ +++++|+++..|++ +........ ..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLA-FAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP 80 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHH-HHhhcccccccchhhhhhhhhccccccccccccc
Confidence 467889999999999999998999999999 79999999999996 443321111 13
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 209 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
.++.++|.+++.++.+++++.++++.|.+.+.+.+||+++ |+++|+||..|+++
T Consensus 81 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 81 LVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred ccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 4788899888999999999999999999999999999986 99999999999985
No 61
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.54 E-value=5.8e-14 Score=108.95 Aligned_cols=110 Identities=27% Similarity=0.409 Sum_probs=94.7
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCC----------------------Cccc
Q 021709 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL----------------------PADS 208 (308)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~----------------------~~~~ 208 (308)
.++.+++++.++.++++.|.+.+.+++||++ +++++|+++..|+. +...... ....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLL-RRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHH-HHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 5688899999999999999999999999999 78999999999996 3322111 1123
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 209 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
.++.++|.+++.++.+++++.++++.|.+.+.+.+||+| +|+++|+||+.|+++
T Consensus 81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 467888888899999999999999999999999999999 899999999999985
No 62
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.54 E-value=1.5e-13 Score=104.18 Aligned_cols=110 Identities=25% Similarity=0.361 Sum_probs=94.7
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCC----------ccccccccccccCceee
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP----------ADSTLVEKVMTPNPECA 222 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~----------~~~~~v~~~~~~~~~~v 222 (308)
++.++.++.++.++++.|.+.+...+||+++++++|+++..++. ........ ....++.++|.+++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLK-LASPSKATTLDIWELYYLLSKIKVSDIMTRDPITV 80 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHH-HhhhcccccccchhhhhhhcccCHHHhccCCCeEe
Confidence 46788999999999999999889999999989999999999996 44332111 01346778888899999
Q ss_pred cCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 223 ~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
..++++.++++.|.+.+.+.+||+|++|+++|+||..||++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 81 SPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 99999999999999999999999998899999999999985
No 63
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.53 E-value=1.5e-13 Score=102.27 Aligned_cols=109 Identities=24% Similarity=0.303 Sum_probs=91.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (308)
++.++.++.++.++.+.|.+.+.+.+||+++++++|+++..|+. +...........++.++|.+++.++++++++.++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 80 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLL-DALIEGKAKFSLPVREVMGEPLPTVDPDAPIEELS 80 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHH-HHHhccccccCcCHHHHhcCCCceeCCCCcHHHHH
Confidence 46788999999999999999999999999888999999999996 54433332223468888888899999999999999
Q ss_pred HHHHhCCCCEEEEECCCCcEEEEEEhhHHHHH
Q 021709 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (308)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~ 264 (308)
++|.. .. .+||++++|+++|+||..||+++
T Consensus 81 ~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 81 ELLDR-GN-VAVVVDEGGKFVGIITRADLLKY 110 (110)
T ss_pred HHHHh-CC-ceeEEecCCeEEEEEeHHHhhcC
Confidence 99988 33 47889888999999999999863
No 64
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=1.6e-13 Score=102.52 Aligned_cols=108 Identities=25% Similarity=0.293 Sum_probs=93.6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (308)
++.+++++.++.++++.|.+.+.+.+||++ +|+++|+++..|++ .+...... ...++.++|.+++.++.+++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDIL-DLDLFESF-LEKKVFNIVSQDVFYVNEEDTIDEA 79 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhH-HHHhhccc-ccCcHHHHhcCCcEEEcCCCcHHHH
Confidence 467899999999999999988999999998 78999999999995 44332211 1346888898899999999999999
Q ss_pred HHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
++.|.+++...+||+|+ |+++|+||..|+++
T Consensus 80 ~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 80 LDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred HHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 99999999999999987 99999999999874
No 65
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.53 E-value=2e-13 Score=125.77 Aligned_cols=166 Identities=17% Similarity=0.191 Sum_probs=132.4
Q ss_pred hcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee--CCEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 021709 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (308)
Q Consensus 139 ~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~ 216 (308)
+...+++++|+|+.++..++.+.++.++.+.+.+++++++||.+ .+.++|++..+|++.......... .....+
T Consensus 203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~---~~~~~~- 278 (429)
T COG1253 203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDL---DLRVLV- 278 (429)
T ss_pred cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcccc---chhhcc-
Confidence 35678899999999999999999999999999999999999998 568999999999985554332211 111222
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcCCCCCCCc------------chhhhH
Q 021709 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNE------------AASTMM 284 (308)
Q Consensus 217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~~~~~~~~------------~~~~~~ 284 (308)
.+|..|+++.++.+++++|.+.+.+-..|+|+.|.+.|+||..||++.+++..+...+..++ ++....
T Consensus 279 ~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~~~~~~~v~G~~~ 358 (429)
T COG1253 279 RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDGWLVDGRVP 358 (429)
T ss_pred cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccccccccceEecCCcEEEecccc
Confidence 38999999999999999999999999999999999999999999999999977765543111 223333
Q ss_pred HHHHHhhccCCCC-CchhhhccccC
Q 021709 285 QKFWDSAMALSPN-DDEEDNRRFYA 308 (308)
Q Consensus 285 ~~~~~~~~~~~~~-~~~~~~~~~~~ 308 (308)
....+....++.. +.+|+|.+||.
T Consensus 359 l~e~~~~l~~~~~~~~~~~Ti~G~v 383 (429)
T COG1253 359 LEELEELLGIDLDEEEDYDTIAGLV 383 (429)
T ss_pred HHHHHHHhCCCCcccCCcccHHHHH
Confidence 5666677777754 44799999973
No 66
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=1.7e-13 Score=105.23 Aligned_cols=111 Identities=23% Similarity=0.218 Sum_probs=92.8
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcC------------CCccccccccccccCc
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN------------LPADSTLVEKVMTPNP 219 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~------------~~~~~~~v~~~~~~~~ 219 (308)
++.++.++.++.++++.|.+.+.+.+||++ +++++|++|..|++..+.... ......++.++|..++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSPV 81 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCCC
Confidence 467889999999999999999999999998 789999999999963322210 0011346788898889
Q ss_pred eeecCCCCHHHHHHHHHhCCCCEEEEEC--CCCcEEEEEEhhHHHH
Q 021709 220 ECATIDTPIVDALHIMHDGKFLHLPVVD--RDGDVVDVVDVIHITH 263 (308)
Q Consensus 220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd--~~~~~iGiit~~di~~ 263 (308)
.++.+++++.++++.|.+.+...+||++ ++|+++|+||..||++
T Consensus 82 ~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 82 ITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred ceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 9999999999999999999999999984 4699999999999985
No 67
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.52 E-value=3.2e-13 Score=100.09 Aligned_cols=105 Identities=27% Similarity=0.383 Sum_probs=93.1
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (308)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (308)
+++.+++.+.++.++.+.|.+.+.+.+||+++++++|+++..|++ .. . ...++.++|...+.++..++++.++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~-~~-----~-~~~~~~~~~~~~~~~v~~~~~l~~~ 74 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLL-GK-----D-PDETVEEIMSKDLVVAVPEMDIMDA 74 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhh-cc-----C-ccccHHHhCCCCCeEECCCCCHHHH
Confidence 467889999999999999988888889998889999999999995 21 1 1346888898889999999999999
Q ss_pred HHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
++.|.+++...+||+|++|+++|+|+..||++
T Consensus 75 ~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 75 ARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred HHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999998899999999999985
No 68
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.52 E-value=1.3e-13 Score=104.75 Aligned_cols=111 Identities=28% Similarity=0.334 Sum_probs=94.1
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcC---CC-----ccccccccccccCceeec
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN---LP-----ADSTLVEKVMTPNPECAT 223 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~---~~-----~~~~~v~~~~~~~~~~v~ 223 (308)
++.+++++.++.++++.|.+.+.+.+||++ +|+++|+++..|+++...... .. ....++.++|..++.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSVT 81 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeEC
Confidence 577899999999999999988999999999 799999999999963321110 00 123467788888899999
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 224 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 224 ~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
.++++.++++.|..++.+.+||+|++|+++|++|..|+++
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 82 PDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred CCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 9999999999999999999999998899999999999985
No 69
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.52 E-value=2e-13 Score=103.76 Aligned_cols=110 Identities=23% Similarity=0.403 Sum_probs=94.8
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCC--------C--ccccccccccccCceee
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL--------P--ADSTLVEKVMTPNPECA 222 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~--------~--~~~~~v~~~~~~~~~~v 222 (308)
++.+++++.++.++.+.|.+.+++.+||+++|+++|+++..++. +.+.... + ....++.++|..++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYL-KAISPFLGTAGETEKDLATLNRRAHQIMTRDPITV 80 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHH-HHHHHHhccccchHHHHHHHHhHHHHhhcCCCeee
Confidence 47789999999999999999899999999988999999999996 4433211 0 01236788888899999
Q ss_pred cCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 223 ~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
..++++.++++.|..++...+||+|++|+++|++|+.|+++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 81 SPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 99999999999999999999999998899999999999986
No 70
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.52 E-value=2.1e-13 Score=103.52 Aligned_cols=109 Identities=31% Similarity=0.371 Sum_probs=93.5
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCC----------CccccccccccccCceee
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL----------PADSTLVEKVMTPNPECA 222 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~----------~~~~~~v~~~~~~~~~~v 222 (308)
++.++.++.++.++.+.|.+.+.+.+||+++|+++|+++..++. +...... .....++.++|..++.++
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIA-DALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITI 80 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHH-HhhhhhhhcccchhhhhhhhccCHHHHccCCceEE
Confidence 46788999999999999998899999999989999999999996 4332211 112346778888899999
Q ss_pred cCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 223 ~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
..++++.++++.|.+.+.+.+||+|+ |+++|+||..|+++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 81 EPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred CCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 99999999999999999999999997 99999999999985
No 71
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.52 E-value=1.7e-13 Score=131.14 Aligned_cols=128 Identities=22% Similarity=0.234 Sum_probs=108.3
Q ss_pred HHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCcccccccccc
Q 021709 137 ERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVM 215 (308)
Q Consensus 137 ~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~ 215 (308)
+.+...+++++|. +++.++++++++.++.+.+.+++.+.+||+| +++++|+++.+|+.+.+... ......++.++|
T Consensus 442 ~~L~~~~V~dim~--~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~-~~~~~~~v~dim 518 (574)
T PRK01862 442 ERLRTTQMRELIQ--PAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDK-RDTTDKTAADYA 518 (574)
T ss_pred hHHhhCcHHHHhc--CCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcc-cccccchHHHhc
Confidence 3445567889987 6788999999999999999999999999999 78999999999996433322 222235788999
Q ss_pred ccCceeecCCCCHHHHHHHHHhCCCCEEEEECCC--CcEEEEEEhhHHHHHHHH
Q 021709 216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD--GDVVDVVDVIHITHAAVA 267 (308)
Q Consensus 216 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~--~~~iGiit~~di~~~~~~ 267 (308)
++++.++++++++.+++++|.+++.+.+||+|++ ++++|+||++|+++++..
T Consensus 519 ~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 519 HTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred cCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 9999999999999999999999999999999876 589999999999987654
No 72
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.52 E-value=3.6e-13 Score=99.42 Aligned_cols=102 Identities=27% Similarity=0.389 Sum_probs=91.1
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (308)
++.++.+++++.++++.|.+.+.+.+||+++++++|+++..+++ ... ...++.++|.+.+.+++.++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~-~~~------~~~~~~~~~~~~~~~v~~~~~l~~~~ 74 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVR-RAH------PNRLVADAMTREVVTISPEASLLEAK 74 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhh-ccc------ccCCHHHHccCCCEEECCCCCHHHHH
Confidence 46778999999999999998888999999988999999999995 321 13467888988999999999999999
Q ss_pred HHHHhCCCCEEEEECCCCcEEEEEEhhHHH
Q 021709 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHIT 262 (308)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~ 262 (308)
+.|..++...+||+|+ |+++|+||..|++
T Consensus 75 ~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 75 RLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred HHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 9999999999999996 9999999999987
No 73
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.51 E-value=7.2e-13 Score=115.70 Aligned_cols=190 Identities=13% Similarity=0.128 Sum_probs=137.2
Q ss_pred HHHHhccCCccccccccccc--CceEEeCCCcHHHHHHHhHhCCCcEeeEee-C-CeEEEEEeHHHHHHHHHHHHHHHHH
Q 021709 30 RVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAE 105 (308)
Q Consensus 30 ~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~-~~~vGivs~~dll~~~~~~~~~~~~ 105 (308)
.++.+...+.+.+++++|.+ .+++++++.++.++++.+.+++++++||++ + ++++|+++..|++......
T Consensus 56 ~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~------ 129 (292)
T PRK15094 56 DMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSD------ 129 (292)
T ss_pred HHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhcc------
Confidence 44445667888899999987 689999999999999999999999999997 3 6899999999997431100
Q ss_pred hHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CC
Q 021709 106 KGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN 184 (308)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~ 184 (308)
.....+.++|. ++.++++++++.++++.|.+++.+.+||+| .|
T Consensus 130 ---------------------------------~~~~~l~~l~r---~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G 173 (292)
T PRK15094 130 ---------------------------------AEAFSMDKVLR---QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFG 173 (292)
T ss_pred ---------------------------------CCcCCHHHHcC---CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCC
Confidence 00112445564 456899999999999999999999999999 78
Q ss_pred EEEEEeeHHHHHHHHHhcCCCccccccc-ccc--ccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHH
Q 021709 185 KPRGILTSKDILMRVISQNLPADSTLVE-KVM--TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHI 261 (308)
Q Consensus 185 ~~~Givt~~dl~~~~~~~~~~~~~~~v~-~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di 261 (308)
.++|+||..|++..+...-.+.....-. .+. ...-..++...++.++.+.+.- + +| + + ++-|...+
T Consensus 174 ~viGiVTleDIle~ivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l~dl~~~l~~-~---l~---~-~---~~~Tl~G~ 242 (292)
T PRK15094 174 GVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAFGT-H---FS---D-E---EVDTIGGL 242 (292)
T ss_pred CEEEEeEHHHHHHHHhCCCccccccccccccEEeCCCeEEEEeccCHHHHHHHhCC-C---CC---C-C---CCccHHHH
Confidence 8999999999986666432222111111 121 2345778889999998888733 1 22 1 1 45577777
Q ss_pred HHHHHHHhcCC
Q 021709 262 THAAVATVGNT 272 (308)
Q Consensus 262 ~~~~~~~~~~~ 272 (308)
+-..++..+..
T Consensus 243 i~~~l~~iP~~ 253 (292)
T PRK15094 243 VMQAFGHLPAR 253 (292)
T ss_pred HHHHhCcCCCC
Confidence 66666655553
No 74
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.50 E-value=3.6e-13 Score=100.29 Aligned_cols=106 Identities=32% Similarity=0.437 Sum_probs=91.7
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecC-CCCHH
Q 021709 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI-DTPIV 229 (308)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~-~~~l~ 229 (308)
+++.++..+.++.++.+.|.+.+.+.+||++ +|+++|+++..++. ... . ...++.++|...+..+.. ++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~----~-~~~~v~~~~~~~~~~~~~~~~~l~ 75 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLR-FET----D-LDKPVSEVMTPENLLTTVEGTSLE 75 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHee-ecc----c-CCCCHHHhcccCceEEecCCCCHH
Confidence 4578899999999999999988999999998 78999999999984 221 1 234788888877777777 99999
Q ss_pred HHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 230 DALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 230 ~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 76 ~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 76 EALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred HHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 9999999999999999998899999999999985
No 75
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.50 E-value=3.8e-13 Score=101.13 Aligned_cols=106 Identities=27% Similarity=0.343 Sum_probs=91.4
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCcEEEEeeC----CEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecC--C
Q 021709 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI--D 225 (308)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~--~ 225 (308)
.++.++.+++++.++.+.|.+.+.+.+||+++ ++++|+++..|++ .... . ..++.++|...+.++.. +
T Consensus 2 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~-~~~~----~-~~~v~~~~~~~~~~~~~~~~ 75 (114)
T cd04602 2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDID-FLTD----S-ETPLSEVMTPREVLVVAPTG 75 (114)
T ss_pred CCCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhh-hhhc----c-CCCHHHhcCCCceEEECCCC
Confidence 35778899999999999998888889999983 7999999999985 3221 1 24688899888888866 9
Q ss_pred CCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 226 TPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 226 ~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
+++.++++.|..++...+||+|++|+++|+||..||++
T Consensus 76 ~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 76 ITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999999999998999999999999975
No 76
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=2.6e-13 Score=101.09 Aligned_cols=101 Identities=21% Similarity=0.271 Sum_probs=88.0
Q ss_pred eCCCCcHHHHHHHHHHcC-----CcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHH
Q 021709 157 ISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (308)
Q Consensus 157 v~~~~~~~~~~~~~~~~~-----~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (308)
+.++.++.++++.|.+++ +..+||++ +++++|+++.++++ . .. ...++.+++..++.++.+++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~-~-----~~-~~~~v~~~~~~~~~~i~~~~~~~~ 74 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLL-L-----AD-PDTPVSDIMDTDVISVSADDDQEE 74 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHh-c-----CC-CcchHHHHhCCCCeEEcCCCCHHH
Confidence 567899999999998766 46789998 78999999999996 2 11 134688888888999999999999
Q ss_pred HHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHH
Q 021709 231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (308)
Q Consensus 231 ~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~ 264 (308)
+++.|...+...+||+|++|+++|+||..|++++
T Consensus 75 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 75 VARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred HHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 9999999999999999988999999999999975
No 77
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.50 E-value=3e-13 Score=125.89 Aligned_cols=138 Identities=25% Similarity=0.292 Sum_probs=112.1
Q ss_pred cCCCCCChhHHHHHHHHHhcC-CCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeC----CEEEEEeeHHHH
Q 021709 121 WGTSISGPNTFIETLRERMFR-PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDI 195 (308)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~~~~Givt~~dl 195 (308)
-|..+++.+...+...+...+ ...++.+. .++.++++++++.+++++|.+++++.+||+++ ++++|++|.+|+
T Consensus 74 GglGvi~~~~~~e~~~~~v~kvk~~e~g~i--~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL 151 (495)
T PTZ00314 74 GGIGVIHNNCSIEEQVEEVRKVKRFENGFI--MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDI 151 (495)
T ss_pred CCeEEecCCCCHHHHHHHHhhccccccccc--cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHH
Confidence 355556655444444433333 33556666 67899999999999999999999999999984 799999999999
Q ss_pred HHHHHhcCCCcccccccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709 196 LMRVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266 (308)
Q Consensus 196 ~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~ 266 (308)
. .. .....++.++|.+ ++.++.+++++.+++++|.+++...+||+|++++++|+||++||++...
T Consensus 152 ~-~~-----~~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 152 D-FV-----KDKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG 218 (495)
T ss_pred h-hc-----ccCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence 4 21 1124579999987 8899999999999999999999999999999999999999999998654
No 78
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.50 E-value=1.1e-12 Score=119.96 Aligned_cols=163 Identities=13% Similarity=0.148 Sum_probs=127.1
Q ss_pred HHHHhccCCccccccccccc--CceEEeCCCcHHHHHHHhHhCCCcEeeEeeC--CeEEEEEeHHHHHHHHHHHHHHHHH
Q 021709 30 RVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAE 105 (308)
Q Consensus 30 ~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~--~~~vGivs~~dll~~~~~~~~~~~~ 105 (308)
.++.+..++.+.+++++|.+ ++++++.++++.++++.+.+++++++||+++ ++++|+++.+|++.....
T Consensus 180 ~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~------- 252 (408)
T TIGR03520 180 KILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK------- 252 (408)
T ss_pred HHHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc-------
Confidence 44455667888899999986 7899999999999999999999999999974 689999999999743100
Q ss_pred hHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CC
Q 021709 106 KGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN 184 (308)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~ 184 (308)
....+.+++ +++.++++++++.++++.|++++.+.++|+| .|
T Consensus 253 ----------------------------------~~~~l~~~~---~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G 295 (408)
T TIGR03520 253 ----------------------------------KNFDWQSLL---REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYG 295 (408)
T ss_pred ----------------------------------CCCCHHHHc---CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCC
Confidence 011234455 3588999999999999999999999999999 79
Q ss_pred EEEEEeeHHHHHHHHHhcCCCcccccccccc---ccCceeecCCCCHHHHHHHHHh
Q 021709 185 KPRGILTSKDILMRVISQNLPADSTLVEKVM---TPNPECATIDTPIVDALHIMHD 237 (308)
Q Consensus 185 ~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~---~~~~~~v~~~~~l~~~~~~~~~ 237 (308)
...|+||..|++..+..+-.+..+ +-.+.+ ......++...++.++.+.|.-
T Consensus 296 ~~~GiVT~eDileeivgei~de~d-~~~~~i~~~~~~~~~v~G~~~l~~l~~~l~~ 350 (408)
T TIGR03520 296 GTSGLVTLEDIIEEIVGDISDEFD-DEDLIYSKIDDNNYVFEGKTSLKDFYKILKL 350 (408)
T ss_pred CEEEEEEHHHHHHHHhCCCCCcCC-cCccceEEeCCCeEEEEeccCHHHHHHHhCC
Confidence 999999999999777654332211 112222 2455778889999999988844
No 79
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.48 E-value=7.8e-13 Score=96.75 Aligned_cols=91 Identities=20% Similarity=0.278 Sum_probs=82.3
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEee-C-CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~-~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (308)
.++++++++++.+|.+.|.+++++++||++ + |+++|+++..|+.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~-------------------------------- 49 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILI-------------------------------- 49 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhh--------------------------------
Confidence 467899999999999999999999999998 4 799999999998642
Q ss_pred hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C-CEEEEEeeHHHHH
Q 021709 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDIL 196 (308)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~ 196 (308)
..+.++.+++++.++++.|.+++.+++||++ + |+++|++|.+|++
T Consensus 50 ------------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~ 96 (98)
T cd04618 50 ------------------------LRLVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRIL 96 (98)
T ss_pred ------------------------eeeEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhh
Confidence 1177899999999999999999999999999 6 8999999999995
No 80
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.48 E-value=3e-13 Score=125.39 Aligned_cols=175 Identities=18% Similarity=0.162 Sum_probs=138.1
Q ss_pred hccCCcccccccccccCceEEeCCCcHHHHHHHhHh-----CCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhH
Q 021709 34 RELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQ-----GKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKG 107 (308)
Q Consensus 34 ~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~-----~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~ 107 (308)
.-..+.+.+++++|.+++++++++.++.++++.|.+ ++...++|+| +++++|+++.++++..
T Consensus 124 ~ll~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a------------ 191 (449)
T TIGR00400 124 LLLSYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA------------ 191 (449)
T ss_pred HHhCCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC------------
Confidence 334556678999999999999999999999999975 4567788887 6899999999998632
Q ss_pred HHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEE
Q 021709 108 KAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKP 186 (308)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~ 186 (308)
....++.++|. +++.++++++++.++++.|.+++...+||+| +|++
T Consensus 192 -------------------------------~~~~~v~~im~--~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~l 238 (449)
T TIGR00400 192 -------------------------------KPEEILSSIMR--SSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRL 238 (449)
T ss_pred -------------------------------CCCCcHHHHhC--CCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeE
Confidence 01234677776 6788999999999999999999999999999 8999
Q ss_pred EEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709 187 RGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265 (308)
Q Consensus 187 ~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~ 265 (308)
+|+||.+|++..+..+ . .+++|.....+..+++++.+++..|.+++...++|. .+.|++| ..++...
T Consensus 239 vGiIt~~Dil~~l~~~-~------~ed~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~~~~~~t-~~ii~~f 305 (449)
T TIGR00400 239 VGIVTVDDIIDVIQSE-A------TEDFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL----LVSSTFT-ATIISNY 305 (449)
T ss_pred EEEEEHHHHHHHHHhh-h------HHHHHHhcCCCCCcchhhhchHHHHHHhccchHHHH----HHHHHHH-HHHHHHH
Confidence 9999999997444322 1 245665555555567888999999999999998885 5777777 5555543
No 81
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.48 E-value=9.2e-13 Score=97.33 Aligned_cols=100 Identities=26% Similarity=0.241 Sum_probs=88.6
Q ss_pred eEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHHHH
Q 021709 155 VTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHI 234 (308)
Q Consensus 155 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~ 234 (308)
.+++++.++.++++.|.+.+.+.+||+++++++|+++..|++ ... ..++.++|...+.+++++.++.++++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~-~~~-------~~~~~~~~~~~~~~v~~~~~l~~a~~~ 75 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIE-NAT-------YGDVVDYIVRGIPYVRLTSTAEEAWEV 75 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHh-hhc-------ccchhhhhhcCCcEEcCCCCHHHHHHH
Confidence 567899999999999999899999999889999999999995 321 124677888889999999999999999
Q ss_pred HHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 235 MHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 235 ~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
|.+++...+||+| +|+++|+||..|+++
T Consensus 76 ~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 76 MMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred HHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 9999999999998 699999999999875
No 82
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.47 E-value=6.8e-13 Score=122.77 Aligned_cols=115 Identities=30% Similarity=0.355 Sum_probs=102.0
Q ss_pred CcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C---CEEEEEeeHHHHHHHHHhcCCCccccccccccc-c
Q 021709 143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E---NKPRGILTSKDILMRVISQNLPADSTLVEKVMT-P 217 (308)
Q Consensus 143 ~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~---~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~-~ 217 (308)
.+.+.|. .++.+++++.++.++++.|.+++++.+||++ + ++++|++|.+|++ ... . ...++.++|. .
T Consensus 81 ~~~~~~~--~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~-~~~----~-~~~~V~dvm~~~ 152 (450)
T TIGR01302 81 RAENGII--SDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIR-FVK----D-KGKPVSEVMTRE 152 (450)
T ss_pred cccCcee--cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHh-hhh----c-CCCCHHHhhCCC
Confidence 3566666 6899999999999999999999999999999 5 6999999999995 321 1 1457899998 4
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709 218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265 (308)
Q Consensus 218 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~ 265 (308)
++.++++++++.++++.|.+++.+.+||+|++|+++|+||..||++..
T Consensus 153 ~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 153 EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR 200 (450)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence 999999999999999999999999999999999999999999999875
No 83
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.47 E-value=1.6e-12 Score=97.81 Aligned_cols=109 Identities=34% Similarity=0.444 Sum_probs=95.9
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (308)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (308)
+.+.++.++.++.++...|.++++..+|+.+.++++|++|.+|++ ......... ..++..+|..++.++.+++++.++
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~-~~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~ 84 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDIL-RALAAGGKR-LLPVKEVMTKPVVTVDPDTPLEEA 84 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHH-HHHhccCCc-cccHHHhccCCcEEECCCCCHHHH
Confidence 579999999999999999999999999999977999999999996 444333322 126889998899999999999999
Q ss_pred HHHHHh-CCCCEEEEECCCC-cEEEEEEhhHHH
Q 021709 232 LHIMHD-GKFLHLPVVDRDG-DVVDVVDVIHIT 262 (308)
Q Consensus 232 ~~~~~~-~~~~~l~Vvd~~~-~~iGiit~~di~ 262 (308)
++.|.. ++.+.+||+|+++ +++|++|..|++
T Consensus 85 ~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 85 LELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred HHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 999999 7999999999886 999999999974
No 84
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.46 E-value=1.5e-12 Score=96.72 Aligned_cols=110 Identities=34% Similarity=0.440 Sum_probs=93.9
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (308)
++.+++.+.++.++.+.|.+.+.+.+||++ +++++|+++..|++ .............+.++|..++.++..++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLL-RALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEA 80 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHH-HHHHhccCCccccHHHHhcCCceecCCCcCHHHH
Confidence 467789999999999999998889999998 68999999999996 4443333221223667788889999999999999
Q ss_pred HHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
++.|...+...+||+|++|+++|+++..|+++
T Consensus 81 ~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 81 AELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 99999999999999999999999999999985
No 85
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.46 E-value=1.4e-12 Score=121.34 Aligned_cols=108 Identities=27% Similarity=0.284 Sum_probs=95.5
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeC----CEEEEEeeHHHHHHHHHhcCCCcccccccccccc--CceeecCCC
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDT 226 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~ 226 (308)
.+.++++++++.++++.|.+++.+.+||+++ ++++|+||..|+. .. . .....+++++|++ ++.++.+++
T Consensus 106 ~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr-~~---~-~~~~~~V~dIMt~~~~~itv~~d~ 180 (502)
T PRK07107 106 SDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYR-IS---R-MSLDTKVKDFMTPFEKLVTANEGT 180 (502)
T ss_pred CCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhh-cc---c-cCCCCCHHHHhCCCCCeEEECCCC
Confidence 4579999999999999999999999999984 7999999999993 32 1 1235689999986 778899999
Q ss_pred CHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709 227 PIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265 (308)
Q Consensus 227 ~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~ 265 (308)
++.+++++|.++++..+||+|++|+++|+||..||++..
T Consensus 181 ~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 181 TLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 999999999999999999999899999999999999854
No 86
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.45 E-value=1.5e-12 Score=121.66 Aligned_cols=115 Identities=27% Similarity=0.332 Sum_probs=102.7
Q ss_pred cccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccc-cCcee
Q 021709 144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPEC 221 (308)
Q Consensus 144 v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~-~~~~~ 221 (308)
+.++|. .++.+++++.++.++++.|.+++++.+||++ +++++|++|.+|+. ... . ...++.++|. .++.+
T Consensus 89 ~~dim~--~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~-~~~----~-~~~~V~dim~~~~~v~ 160 (486)
T PRK05567 89 SESGVV--TDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVR-FET----D-LSQPVSEVMTKERLVT 160 (486)
T ss_pred hhhccc--CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhh-hcc----c-CCCcHHHHcCCCCCEE
Confidence 567776 7899999999999999999999999999999 89999999999994 321 1 2357889998 78899
Q ss_pred ecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709 222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266 (308)
Q Consensus 222 v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~ 266 (308)
+..++++.++++.|.+++.+.+||+|++|+++|+||..||++...
T Consensus 161 v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 161 VPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE 205 (486)
T ss_pred ECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence 999999999999999999999999999999999999999998753
No 87
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.44 E-value=1.3e-12 Score=98.94 Aligned_cols=109 Identities=25% Similarity=0.320 Sum_probs=93.0
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCC---------CccccccccccccCceee
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL---------PADSTLVEKVMTPNPECA 222 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~---------~~~~~~v~~~~~~~~~~v 222 (308)
++.+++++.++.++.+.|.+.+.+.+||++ +++++|+++..+++ ....... .....++.++|...+.++
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i 80 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLR-DASPSPFTTLSEHELYLLLKMPVKEIMTKDVITV 80 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHH-HHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEE
Confidence 467889999999999999988999999999 69999999999996 4332110 112346788888899999
Q ss_pred cCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 223 ~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
..++++.++++.|...+...+||+|. |+++|++|..||++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 81 HPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred CCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 99999999999999999999999986 99999999999985
No 88
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.44 E-value=1.5e-12 Score=120.76 Aligned_cols=120 Identities=19% Similarity=0.255 Sum_probs=104.4
Q ss_pred cCCCcccccCCCCceeEeCCCCcHHHHHHHHHH-----cCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCcccccccc
Q 021709 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE-----LRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK 213 (308)
Q Consensus 140 ~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~ 213 (308)
...+++++|+ +++.+++++.++.++.+.+.+ .+...++|++ +++++|+++.+|++. .. ...++++
T Consensus 129 ~e~tvg~iMt--~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~------a~-~~~~v~~ 199 (449)
T TIGR00400 129 SDDSAGRIMT--IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLIL------AK-PEEILSS 199 (449)
T ss_pred CcchHHHhCc--CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhc------CC-CCCcHHH
Confidence 4567899998 789999999999999999975 3456788888 889999999999962 11 2457999
Q ss_pred ccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHH
Q 021709 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT 268 (308)
Q Consensus 214 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~ 268 (308)
+|.+++.++++++++.++++.|.+++...+||+|++|+++|+||.+|+++.+...
T Consensus 200 im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~ 254 (449)
T TIGR00400 200 IMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE 254 (449)
T ss_pred HhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999877653
No 89
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.44 E-value=3.3e-12 Score=119.07 Aligned_cols=110 Identities=27% Similarity=0.286 Sum_probs=98.6
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCcEEEEeeC----CEEEEEeeHHHHHHHHHhcCCCccccccccccccC--ceeecCC
Q 021709 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN--PECATID 225 (308)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~--~~~v~~~ 225 (308)
++++++++++++.++.+.|.+++++.+||+++ ++++|+||.+|+. ... ....++.++|.+. +.++.++
T Consensus 108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~-~v~-----~~~~~V~eIMt~~~~lvtv~~~ 181 (505)
T PLN02274 108 SDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWD-FVN-----DRETKLSEVMTSDDDLVTAPAG 181 (505)
T ss_pred CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHh-hcc-----ccCCcHHHHhccCCCcEEECCC
Confidence 68999999999999999999999999999984 7999999999994 321 1256899999876 7799999
Q ss_pred CCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709 226 TPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (308)
Q Consensus 226 ~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~ 267 (308)
+++.+++++|.+++...+||+|++++++|+||+.||+++...
T Consensus 182 ~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 182 IDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 999999999999999999999999999999999999987764
No 90
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.44 E-value=2.1e-12 Score=96.64 Aligned_cols=106 Identities=15% Similarity=0.107 Sum_probs=88.9
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
++.++++++++.+|++.|.+++.+.+||++ +++++|+++..|+.+...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~------------------------------- 50 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGP------------------------------- 50 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcc-------------------------------
Confidence 467899999999999999999999999998 589999999999864200
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
......++.++|. .++.++.+++++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus 51 --------~~~~~~~v~~~~~--~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~ 109 (111)
T cd04603 51 --------NDYETLKVCEVYI--VPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELL 109 (111)
T ss_pred --------ccccccChhheee--cCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhh
Confidence 0011224666775 6788999999999999999999999999999 79999999999995
No 91
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.43 E-value=3.6e-12 Score=119.20 Aligned_cols=172 Identities=22% Similarity=0.264 Sum_probs=128.1
Q ss_pred ccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhc
Q 021709 42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120 (308)
Q Consensus 42 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (308)
.++++|.+++++++++.++.+++++|.++++..+||++ +++++|+++..|+....
T Consensus 88 ~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~------------------------ 143 (486)
T PRK05567 88 RSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET------------------------ 143 (486)
T ss_pred hhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc------------------------
Confidence 35778889999999999999999999999999999998 68999999999985210
Q ss_pred cCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHH
Q 021709 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV 199 (308)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~ 199 (308)
....++.++|. ..+++++++++++.++++.|.+++.+.+||++ +++++|++|.+|+++..
T Consensus 144 ------------------~~~~~V~dim~-~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 144 ------------------DLSQPVSEVMT-KERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE 204 (486)
T ss_pred ------------------cCCCcHHHHcC-CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence 01123556664 25789999999999999999999999999999 89999999999997443
Q ss_pred HhcCCC---ccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEC-CCCcEEEEEEhhHHHHH
Q 021709 200 ISQNLP---ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVD-RDGDVVDVVDVIHITHA 264 (308)
Q Consensus 200 ~~~~~~---~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~~~~iGiit~~di~~~ 264 (308)
...... .....+...|... + .+ .+..+.|.+.+...+ ++| .+|+..|+++..+.++.
T Consensus 205 ~~p~a~~d~~g~l~V~aai~~~-----~-~~-~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 205 EFPNACKDEQGRLRVGAAVGVG-----A-DN-EERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred hCCCcccccCCCEEEEeecccC-----c-ch-HHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHh
Confidence 221110 0122344444432 2 12 677778888899866 555 46888777765555553
No 92
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.43 E-value=1.7e-12 Score=115.89 Aligned_cols=119 Identities=14% Similarity=0.136 Sum_probs=100.0
Q ss_pred ccccccccccc--CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 021709 39 EETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE 115 (308)
Q Consensus 39 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~ 115 (308)
...+++++|.+ +++++++++++.+|++.|.+++...+||++ +|+++|+++..|+.+.....
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~---------------- 263 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMG---------------- 263 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcC----------------
Confidence 45578999987 899999999999999999998888888887 78999999999986421100
Q ss_pred hhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHH
Q 021709 116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDI 195 (308)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl 195 (308)
......++.++|. +++.++.+++++.++++.|.+++.+.+||+++++++|++|.+|+
T Consensus 264 ---------------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~di 320 (326)
T PRK10892 264 ---------------------IDLRQASIADVMT--PGGIRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDL 320 (326)
T ss_pred ---------------------CCcccCCHHHhcC--CCCEEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHh
Confidence 0011245778887 68999999999999999999999999999998899999999999
Q ss_pred H
Q 021709 196 L 196 (308)
Q Consensus 196 ~ 196 (308)
+
T Consensus 321 l 321 (326)
T PRK10892 321 L 321 (326)
T ss_pred H
Confidence 7
No 93
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=3.4e-12 Score=100.11 Aligned_cols=109 Identities=30% Similarity=0.378 Sum_probs=93.1
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCC---------------------------
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP--------------------------- 205 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~--------------------------- 205 (308)
++.+++++.++.++.+.|.+.+++.+||+++++++|+++..|++ +.+.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDIL-KLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHH-HHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 57889999999999999999999999999888999999999996 44432110
Q ss_pred -----ccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 206 -----ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 206 -----~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
....++.++|...+.+++.++++.++++.|...+...+||+++ |+++|++|..|+++
T Consensus 81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 0134577788889999999999999999999999999999986 99999999999974
No 94
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=1.2e-12 Score=98.32 Aligned_cols=94 Identities=26% Similarity=0.359 Sum_probs=81.4
Q ss_pred CCCCCcCEEEEECCC-CcEEEEEehhHHHHHHHHhccCCcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee
Q 021709 1 MAARRVDALLLTDSN-ALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE 79 (308)
Q Consensus 1 m~~~~~~~~~V~~~~-~~~~Giit~~D~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd 79 (308)
|.+++++.+||++++ ++++|++|..|+++.+..........+++++|.+++.++++++++.++++.|.+++...+||++
T Consensus 19 ~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd 98 (114)
T cd04630 19 MKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVE 98 (114)
T ss_pred HHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee
Confidence 456788899999987 8999999999998655554334445689999988999999999999999999999999999998
Q ss_pred CCeEEEEEeHHHHHH
Q 021709 80 NGEVIALLDIAKCLY 94 (308)
Q Consensus 80 ~~~~vGivs~~dll~ 94 (308)
+|+++|+++..++++
T Consensus 99 ~~~~~Gvi~~~dl~~ 113 (114)
T cd04630 99 NNELIGIISLTDIFL 113 (114)
T ss_pred CCEEEEEEEHHHhhc
Confidence 899999999999864
No 95
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.42 E-value=3.7e-12 Score=94.38 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=87.3
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCcEEEEeeC----CEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCC
Q 021709 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTP 227 (308)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~ 227 (308)
+....+.++.++.++.+.+.+.+.+.+||+++ ++++|+++.+|+. ..... +|.+++.+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~-~~~~~-----------~m~~~~~~v~~~~~ 69 (105)
T cd04591 2 PLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLV-VALKN-----------YIDPSPFTVSPRTS 69 (105)
T ss_pred CceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHH-HHHHH-----------hccCCCceECCCCc
Confidence 45678899999999999999888888999984 7899999999995 43322 67778899999999
Q ss_pred HHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 228 IVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 228 l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
+.++++.|..++.+.+||++ +|+++|+||+.|+++
T Consensus 70 l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 70 LEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred HHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 99999999999999999995 799999999999985
No 96
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=1.9e-12 Score=98.25 Aligned_cols=116 Identities=23% Similarity=0.276 Sum_probs=88.3
Q ss_pred cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (308)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (308)
+++.++++++++.+|++.|.+++++.+||++ +|+++|+++..|++.........
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~------------------------- 55 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYN------------------------- 55 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccc-------------------------
Confidence 4678999999999999999999999999997 68999999999998542211000
Q ss_pred hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
.........+. ....|. .++.++.+++++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus 56 --~~~~~~~~~~~---~~~~~~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~ 118 (120)
T cd04641 56 --NLDLTVGEALE---RRSQDF--EGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDIL 118 (120)
T ss_pred --cccCCHHHHHh---hcccCC--CCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhh
Confidence 00000000000 112232 5678999999999999999999999999999 68999999999985
No 97
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.42 E-value=3.9e-12 Score=92.63 Aligned_cols=91 Identities=25% Similarity=0.345 Sum_probs=82.7
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
+++++.++.++.+|++.|.++++..+||++ +|+++|+++..++.+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~--------------------------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK--------------------------------- 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC---------------------------------
Confidence 577899999999999999999999999998 6899999999998632
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
..+.++.+++++.++++.|.+++.+.+||++ +++++|++|.+|++
T Consensus 49 -----------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~ 94 (96)
T cd04614 49 -----------------------SEVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLL 94 (96)
T ss_pred -----------------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhh
Confidence 2378899999999999999999999999998 68999999999995
No 98
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.42 E-value=1.6e-12 Score=112.84 Aligned_cols=112 Identities=27% Similarity=0.370 Sum_probs=97.9
Q ss_pred CCcccccCCCCc-eeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCc
Q 021709 142 PSLSTIIPEKSK-VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219 (308)
Q Consensus 142 ~~v~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~ 219 (308)
.++.++|. ++ +.++.++.++.++++.|.+.+.+.+||++ +|+++|+++..|++ +........ ..++.++|.+++
T Consensus 155 ~~v~~im~--~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~-~~~~~~~~~-~~~v~~im~~~~ 230 (268)
T TIGR00393 155 VKVKDLMQ--TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLR-RALLGGGSL-KSEVRDFMTLGP 230 (268)
T ss_pred hhHHHHhC--CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHH-HHHhcCCcc-cCcHHHhCCCCC
Confidence 45788887 55 88999999999999999988899999999 89999999999996 444332222 457999999999
Q ss_pred eeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEE
Q 021709 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVD 257 (308)
Q Consensus 220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit 257 (308)
.++.+++++.++++.|.+.+...+||+|++|+++|+|+
T Consensus 231 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 231 KTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred eEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 99999999999999999999999999998899999985
No 99
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.42 E-value=8.9e-12 Score=115.32 Aligned_cols=180 Identities=16% Similarity=0.165 Sum_probs=129.6
Q ss_pred CcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 021709 38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (308)
Q Consensus 38 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~ 116 (308)
....+++++|.++++++.+++++.+++++|.++++..+||+| +++++|+|+..|+...
T Consensus 86 l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~--------------------- 144 (479)
T PRK07807 86 VAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV--------------------- 144 (479)
T ss_pred HhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC---------------------
Confidence 344567889999999999999999999999999999999998 6899999999997311
Q ss_pred hhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHH
Q 021709 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 195 (308)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl 195 (308)
....++.++|. .++.++++++++.+++++|.+++.+.+||+| +++++|+||.+|+
T Consensus 145 ----------------------~~~~~V~diMt--~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DI 200 (479)
T PRK07807 145 ----------------------DRFTQVRDVMS--TDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGA 200 (479)
T ss_pred ----------------------ccCCCHHHhcc--CCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHH
Confidence 01134677887 7899999999999999999999999999999 8999999999999
Q ss_pred HHHHHhcCCCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECC-CCcEEEEEEhhHHHHHHHHHhcC
Q 021709 196 LMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR-DGDVVDVVDVIHITHAAVATVGN 271 (308)
Q Consensus 196 ~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~iGiit~~di~~~~~~~~~~ 271 (308)
+ +..... +....-...+-.. .+.......+.++.|.+.+.+.+ ++|. +|. -....+.++.+....++
T Consensus 201 l-~~~~~~--~~~~~~g~l~V~a--av~~~~~~~~~a~~Lv~aGvd~i-~~D~a~~~---~~~~~~~i~~ik~~~p~ 268 (479)
T PRK07807 201 L-RATIYT--PAVDAAGRLRVAA--AVGINGDVAAKARALLEAGVDVL-VVDTAHGH---QEKMLEALRAVRALDPG 268 (479)
T ss_pred H-HHhhCC--chhhhhhccchHh--hhccChhHHHHHHHHHHhCCCEE-EEeccCCc---cHHHHHHHHHHHHHCCC
Confidence 7 433221 1000000111001 12223346788888888898875 5564 444 33444555555555543
No 100
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.40 E-value=2.1e-11 Score=112.72 Aligned_cols=178 Identities=13% Similarity=0.078 Sum_probs=126.6
Q ss_pred CcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q 021709 38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV 117 (308)
Q Consensus 38 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~ 117 (308)
....++.++|.++++++.+++++.+++++|.++++..+||+|+++++|+++..|+...
T Consensus 85 v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~---------------------- 142 (475)
T TIGR01303 85 VAFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGV---------------------- 142 (475)
T ss_pred HhhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcC----------------------
Confidence 3455777889999999999999999999999999999999998899999999997311
Q ss_pred hhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
-...++.++|. .+++++++++++.+++++|.+++.+.+||++ +++++|+||.+|++
T Consensus 143 ---------------------~~~~~V~dIMt--~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl 199 (475)
T TIGR01303 143 ---------------------DRFTQVRDIMS--TDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGAL 199 (475)
T ss_pred ---------------------CCCCCHHHHcc--CCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHH
Confidence 01134777887 7899999999999999999999999999999 89999999999997
Q ss_pred HHHHhcCCCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHH
Q 021709 197 MRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT 268 (308)
Q Consensus 197 ~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~ 268 (308)
+..... +... .+. -..--..+.......+.++.|.+.+.+.+.+=-.+|+. ....|.++.+...
T Consensus 200 -~~~~~~--~~~d-~~g-rl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~---~~~~~~i~~i~~~ 263 (475)
T TIGR01303 200 -RATIYT--PATD-AAG-RLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQ---VKMISAIKAVRAL 263 (475)
T ss_pred -HHHhCC--chhh-hcc-CceehheeeeCccHHHHHHHHHHhCCCEEEEeCCCCCc---HHHHHHHHHHHHH
Confidence 433221 1000 000 00011112234456677777888888776442234544 3333444444433
No 101
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.40 E-value=2e-12 Score=97.15 Aligned_cols=93 Identities=25% Similarity=0.361 Sum_probs=79.8
Q ss_pred CCCCCcCEEEEECCCCcEEEEEehhHHHHHHHHhccCCcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-
Q 021709 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE- 79 (308)
Q Consensus 1 m~~~~~~~~~V~~~~~~~~Giit~~D~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd- 79 (308)
|.+++.+.+||+|++++++|++|..|+.+............+++++|.+++.++.+++++.+|++.|.+++...+||++
T Consensus 19 ~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 98 (114)
T cd04619 19 LGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE 98 (114)
T ss_pred HHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECC
Confidence 4567889999999889999999999998544331223345679999999999999999999999999999999999998
Q ss_pred CCeEEEEEeHHHHH
Q 021709 80 NGEVIALLDIAKCL 93 (308)
Q Consensus 80 ~~~~vGivs~~dll 93 (308)
+|+++|+++..+++
T Consensus 99 ~~~~~Gvi~~~dl~ 112 (114)
T cd04619 99 NARPLGVLNARDAL 112 (114)
T ss_pred CCcEEEEEEhHhhc
Confidence 58999999999986
No 102
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.40 E-value=4.9e-12 Score=118.08 Aligned_cols=124 Identities=19% Similarity=0.203 Sum_probs=101.8
Q ss_pred HHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccc
Q 021709 136 RERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKV 214 (308)
Q Consensus 136 ~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~ 214 (308)
...+...++.++|. +++.++.+++++.++++.|.+++++.+||++ +++++|+||..|++ +.+.........++.++
T Consensus 329 ~~~l~~~~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~v~~i 405 (454)
T TIGR01137 329 FDVLKNATVKDLHL--PAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELL-SALFAGKANPDDAVSKV 405 (454)
T ss_pred HHHhccCCHHHhCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHH-HHHhccCCCcCCCHHHh
Confidence 34456667889997 7899999999999999999988999999998 78999999999996 44333322224578899
Q ss_pred cccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709 215 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265 (308)
Q Consensus 215 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~ 265 (308)
|.+++.+++.++++.+++++|..++ .|||+++|+++|+||+.||++++
T Consensus 406 m~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 406 MSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred cCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 9989999999999999999998864 34455579999999999999863
No 103
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=1e-11 Score=91.56 Aligned_cols=102 Identities=25% Similarity=0.310 Sum_probs=87.8
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (308)
++.++++++++.++++.|.+++...+||+++++++|+++..++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~~~~--------------------------------- 48 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVRRAH--------------------------------- 48 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhhccc---------------------------------
Confidence 56789999999999999999999999999999999999999986420
Q ss_pred HHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (308)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~ 196 (308)
...++.++|. .++.++++++++.++++.|.+++.+.+||+++++++|++|..|++
T Consensus 49 ----------~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~~l~ 103 (105)
T cd04599 49 ----------PNRLVADAMT--REVVTISPEASLLEAKRLMEEKKIERLPVLRERKLVGIITKGTIA 103 (105)
T ss_pred ----------ccCCHHHHcc--CCCEEECCCCCHHHHHHHHHHcCCCEeeEEECCEEEEEEEHHHhc
Confidence 0112445564 678999999999999999999999999999989999999999985
No 104
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=5.6e-12 Score=94.61 Aligned_cols=109 Identities=19% Similarity=0.276 Sum_probs=87.4
Q ss_pred cCceEEeCCCcHHHHHHHhHhCC-CcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCC
Q 021709 49 RNPTFVLSDTLAVEALQKMVQGK-FRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 126 (308)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~-~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (308)
+++.++++++++.+|++.|.+++ ...+||++ +|+++|+++..+++......
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~--------------------------- 53 (114)
T cd04801 1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQ--------------------------- 53 (114)
T ss_pred CCcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhh---------------------------
Confidence 35778999999999999997765 88999998 58999999999987542100
Q ss_pred ChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 127 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
....++.++|.+...+.++.+++++.++++.|.+++.+++||++ +++++|++|.+|++
T Consensus 54 ------------~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~ 112 (114)
T cd04801 54 ------------WAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLL 112 (114)
T ss_pred ------------ccccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEecccee
Confidence 01223555664223466899999999999999999999999998 68999999999985
No 105
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.38 E-value=1.4e-12 Score=118.33 Aligned_cols=94 Identities=33% Similarity=0.469 Sum_probs=87.6
Q ss_pred CCCCCcCEEEEECCCCcEEEEEehhHHHHHHHHhccCCcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC
Q 021709 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN 80 (308)
Q Consensus 1 m~~~~~~~~~V~~~~~~~~Giit~~D~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~ 80 (308)
|.+.|++++.++++++...||+|.+|++++++.+..+. ..+|+.+|..++++++.++.+.+|+.+|.+++++++||.++
T Consensus 175 m~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~ 253 (610)
T COG2905 175 MKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-TQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTED 253 (610)
T ss_pred HHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-ccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeecC
Confidence 67889999999999999999999999998887776554 78999999999999999999999999999999999999999
Q ss_pred CeEEEEEeHHHHHHH
Q 021709 81 GEVIALLDIAKCLYD 95 (308)
Q Consensus 81 ~~~vGivs~~dll~~ 95 (308)
|+++|+++..|+++.
T Consensus 254 gq~~Gilt~~dIl~l 268 (610)
T COG2905 254 GQPLGILTLTDILRL 268 (610)
T ss_pred CeeeEEeeHHHHHHh
Confidence 999999999999864
No 106
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=1.1e-11 Score=91.64 Aligned_cols=103 Identities=28% Similarity=0.417 Sum_probs=89.4
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 231 (308)
++.++.++.++.+++..|.+.+.+.+||++ +++++|+++..+++ .. ....++.++|...+.++..++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~-~~------~~~~~~~~~~~~~~~~v~~~~~l~~~ 74 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLL-RN------PEEEQLALLMTRDPPTVSPDDDVKEA 74 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHH-hc------cccchHHHHhcCCCceECCCCCHHHH
Confidence 467788999999999999988889999998 68999999999995 31 11235677788889999999999999
Q ss_pred HHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
+..|..++.+.+||+| +|+++|+||..|+++
T Consensus 75 ~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~ 105 (106)
T cd04638 75 AKLMVENNIRRVPVVD-DGKLVGIVTVADIVR 105 (106)
T ss_pred HHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence 9999999999999998 489999999999875
No 107
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.38 E-value=4.3e-12 Score=113.13 Aligned_cols=117 Identities=12% Similarity=0.167 Sum_probs=99.7
Q ss_pred ccccccccccC--ceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 021709 40 ETPVSKVMTRN--PTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (308)
Q Consensus 40 ~~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~ 116 (308)
..+|+++|.++ +.++++++++.+|.+.|.+.+...+||++ +|+++|+++..|+.+.....
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~----------------- 258 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGG----------------- 258 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCC-----------------
Confidence 46799999988 99999999999999999999999999998 68999999999986431100
Q ss_pred hhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHH
Q 021709 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 195 (308)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl 195 (308)
.....++.++|. +++.++.+++++.++++.|.+++...+||++ +++++|++|..|+
T Consensus 259 ---------------------~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di 315 (321)
T PRK11543 259 ---------------------GALTTPVNEAMT--RGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDF 315 (321)
T ss_pred ---------------------CCcCCcHHHhcC--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHH
Confidence 011234667786 6788999999999999999999999999999 7899999999999
Q ss_pred H
Q 021709 196 L 196 (308)
Q Consensus 196 ~ 196 (308)
+
T Consensus 316 ~ 316 (321)
T PRK11543 316 Y 316 (321)
T ss_pred H
Confidence 6
No 108
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=1.5e-11 Score=92.91 Aligned_cols=110 Identities=22% Similarity=0.336 Sum_probs=88.9
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
++.++++++++.+|++.|.++++..+||++ +++++|+++..++.+......
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~---------------------------- 53 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA---------------------------- 53 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC----------------------------
Confidence 568999999999999999999999999998 589999999999876422100
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C---CEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E---NKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~---~~~~Givt~~dl~ 196 (308)
.....++.++|.....+.++.+++++.+++++|.+++.+.+||++ + ++++|++|.+|++
T Consensus 54 ---------~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~ 116 (118)
T cd04617 54 ---------DLQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNIT 116 (118)
T ss_pred ---------CccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhhee
Confidence 011223455664113688999999999999999999999999998 5 6999999999985
No 109
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=2.4e-11 Score=90.52 Aligned_cols=107 Identities=21% Similarity=0.279 Sum_probs=90.1
Q ss_pred cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
+++.+++++.++.++.+.|.+++...+||+++++++|+++..++.+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~~~~~~~----------------------------- 52 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVEKALRHG----------------------------- 52 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHHHHHhcc-----------------------------
Confidence 467889999999999999999999999999889999999999986531100
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~ 196 (308)
....++.++|. ..+.++.+++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus 53 ----------~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvvt~~di~ 108 (110)
T cd04595 53 ----------LGHAPVKDYMS--TDVVTVPPDTPLSEVQELMVEHDIGRVPVVEDGRLVGIVTRTDLL 108 (110)
T ss_pred ----------cccCcHHHHhc--CCCEEECCCCcHHHHHHHHHHcCCCeeEEEeCCEEEEEEEhHHhh
Confidence 01233556665 678899999999999999999999999999988999999999985
No 110
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=1.2e-11 Score=93.47 Aligned_cols=110 Identities=20% Similarity=0.299 Sum_probs=90.2
Q ss_pred ceeEeCCCCcHHHHHHHHHHcC-CcEEEEeeCCEEEEEeeHHHHHHHHHhcCCC---ccccccccccccCceeecCCCCH
Q 021709 153 KVVTISPTDTVLMATKKMLELR-LSSAVVTVENKPRGILTSKDILMRVISQNLP---ADSTLVEKVMTPNPECATIDTPI 228 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~-~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~---~~~~~v~~~~~~~~~~v~~~~~l 228 (308)
++.++++++++.++++.|...+ .+.+||+++|+++|+++..|++ +....... ....++.++|...+.++.+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~ 80 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALM-ELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPL 80 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHH-HHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCH
Confidence 4567899999999999998876 8899999889999999999995 44332110 11346888999899999999999
Q ss_pred HHHHHHHHhCCCC---EEEEECCCCcEEEEEEhhHHHH
Q 021709 229 VDALHIMHDGKFL---HLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 229 ~~~~~~~~~~~~~---~l~Vvd~~~~~iGiit~~di~~ 263 (308)
.++++.|...+.. ..||++++|+++|+||..|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 81 EEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred HHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 9999999988754 3468888899999999999975
No 111
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=1.9e-11 Score=93.05 Aligned_cols=119 Identities=22% Similarity=0.289 Sum_probs=92.8
Q ss_pred cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (308)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (308)
+++.+++++.++.++.+.|.+++++.+||++ +|+++|+++..+++.........
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~------------------------- 56 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRR------------------------- 56 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccc-------------------------
Confidence 5788999999999999999999999999998 59999999999987542211000
Q ss_pred hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
.............++.++|. .++.++++++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus 57 --~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~ 122 (124)
T cd04600 57 --PLRGRLRGRDKPETVGDIMS--PPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLI 122 (124)
T ss_pred --hhhhhhhcccccccHHHhcc--CCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhh
Confidence 00000000112334667776 6899999999999999999999999999999 89999999999995
No 112
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.34 E-value=2.9e-11 Score=90.10 Aligned_cols=109 Identities=24% Similarity=0.321 Sum_probs=90.2
Q ss_pred cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
+++.+++++.++.++.+.|.+++.+.+||+++++++|+++..++++.....
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~----------------------------- 51 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAE----------------------------- 51 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhcc-----------------------------
Confidence 367789999999999999999999999999889999999999987532110
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~ 196 (308)
......++.++|. .++.++.+++++.++++.|.+.+.+.+||+++|+++|++|.+|++
T Consensus 52 --------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Giit~~di~ 109 (111)
T cd04800 52 --------GLDPDTPVSEVMT--APPITIPPDATVFEALLLMLERGIHHLPVVDDGRLVGVISATDLL 109 (111)
T ss_pred --------CCCccCCHHHHhC--CCCeEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhh
Confidence 0001223556665 678899999999999999999999999999888999999999995
No 113
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=4.3e-11 Score=91.12 Aligned_cols=116 Identities=22% Similarity=0.207 Sum_probs=87.9
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEee-C-CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~-~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (308)
++.++.+++++.+|++.|.++++.++||++ + ++++|+++..|+++.......... .
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~--~-------------------- 59 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFP--G-------------------- 59 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhcc--c--------------------
Confidence 567899999999999999999999999998 4 799999999999865332111000 0
Q ss_pred hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHH
Q 021709 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 195 (308)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl 195 (308)
..... .......+++. .++.++.+++++.++++.|.+++.+++||++ +++++|+||.+|+
T Consensus 60 ----~~~~~--~~~~~~~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di 120 (123)
T cd04627 60 ----LDPLY--PIPLRDLTIGT--SDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV 120 (123)
T ss_pred ----hhhhh--hhhhhhcccCc--CCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHh
Confidence 00000 00001223444 6789999999999999999999999999998 7899999999998
No 114
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=3.7e-11 Score=89.71 Aligned_cols=109 Identities=22% Similarity=0.302 Sum_probs=88.6
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (308)
.+.++++++++.++++.|.+++...++|.++|+++|+++..++++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~----------------------------- 52 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHG----------------------------- 52 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHhcC-----------------------------
Confidence 467899999999999999888888888888899999999999976522100
Q ss_pred HHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (308)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~ 196 (308)
......++.++|. ..+.++.+++++.++++.|.+++...+||+++++++|++|.+|++
T Consensus 53 -------~~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~~~~~Gvvt~~dl~ 110 (112)
T cd04625 53 -------AGVLDTTVRAIMN--PEPIVASPDDSIDEVRRLMVERHLRYLPVLDGGTLLGVISFHDVA 110 (112)
T ss_pred -------CchhcCCHHHHhC--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEECCEEEEEEEHHHhh
Confidence 0001123566665 568899999999999999999999999999989999999999995
No 115
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=4.1e-11 Score=89.16 Aligned_cols=105 Identities=28% Similarity=0.412 Sum_probs=88.2
Q ss_pred cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (308)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (308)
+++.++.++.++.++++.|.+++...+||++ +|+++|+++..++++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~---------------------------- 53 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARD---------------------------- 53 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhC----------------------------
Confidence 5778999999999999999999999999998 58999999999987542110
Q ss_pred hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
..++.++|. .++.++.+++++.++++.|.+.+.+.+||++ +|+++|++|..|+.
T Consensus 54 -------------~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~ 108 (110)
T cd04605 54 -------------KKSVEDIMT--RNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDIS 108 (110)
T ss_pred -------------ccCHHHhcC--CCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhh
Confidence 012444554 5788999999999999999999999999998 78999999999984
No 116
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=2.4e-11 Score=90.96 Aligned_cols=111 Identities=26% Similarity=0.424 Sum_probs=90.6
Q ss_pred cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (308)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (308)
+++.+++++.++.++++.|.+++.+.+||++ +++++|+++..++++........
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~------------------------- 55 (114)
T cd04629 1 RNPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYH------------------------- 55 (114)
T ss_pred CCCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhc-------------------------
Confidence 3577899999999999999999999999998 68999999999987653321000
Q ss_pred hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (308)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~ 196 (308)
.....++.++|. .++..+.+++++.++++.|.+++.+.+||+++|+++|++|..|++
T Consensus 56 ----------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvit~~di~ 112 (114)
T cd04629 56 ----------CDGVATVRDIMT--TEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDDGKLVGQISRRDVL 112 (114)
T ss_pred ----------cCCCccHHHHhc--cCceEECCCCcHHHHHHHHHHhCCCccCEEECCEEEEEEEHHHHh
Confidence 011234566665 578899999999999999999999999999888999999999995
No 117
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.33 E-value=3.9e-11 Score=88.64 Aligned_cols=101 Identities=20% Similarity=0.231 Sum_probs=86.1
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
++.+++++.++.+|++.|.+++...+||++ +|+++|+++..++++..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~-------------------------------- 49 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS-------------------------------- 49 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc--------------------------------
Confidence 567899999999999999999999999998 68999999999987430
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
..++.++|. +.+..+.+++++.++++.|.+++...+||++ +++++|++|.++++
T Consensus 50 ------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~ 104 (106)
T cd04582 50 ------------GGCCGDHAE--PFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIA 104 (106)
T ss_pred ------------ccchhhhcc--cCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhh
Confidence 011445554 5677899999999999999999999999998 78999999999985
No 118
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=2.1e-11 Score=90.94 Aligned_cols=106 Identities=14% Similarity=0.174 Sum_probs=88.4
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
++.++.+++++.++++.|.+.+...+||++ +|+++|+++..++.+.....
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~----------------------------- 52 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEG----------------------------- 52 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhc-----------------------------
Confidence 567899999999999999988999999998 48999999999987542210
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
....++.++|. .++.+++++.++.++++.|.+++.+.+||++ +++++|++|.+|+.
T Consensus 53 ----------~~~~~v~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~ 109 (111)
T cd04639 53 ----------GPDAPVRGVMR--RDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVG 109 (111)
T ss_pred ----------CCCCcHHHHhc--CCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhh
Confidence 01123556665 6788999999999999999999999999998 59999999999984
No 119
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=3e-11 Score=93.77 Aligned_cols=131 Identities=21% Similarity=0.271 Sum_probs=92.8
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
++.+++++.++.+|++.|.+++...+||++ +++++|+++..++++............. +.-. ..+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~---~~~~--~~~--------- 67 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKK---SIKM--KRK--------- 67 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchh---hhhh--hhh---------
Confidence 467899999999999999999999999998 5999999999999865321100000000 0000 000
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~ 196 (308)
..............++.++|. +++..+.+++++.++++.|.+.+.+.+||+++|+++|++|.+|++
T Consensus 68 ~~~~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~~di~ 133 (135)
T cd04621 68 AGQKRYRYVKEVPLVAEDIMT--EEIITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITKTDIC 133 (135)
T ss_pred cccccccccccccccHHHhcC--CCCeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEHHHHh
Confidence 000000000112345778886 678899999999999999999999999999989999999999985
No 120
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.33 E-value=4.4e-11 Score=88.99 Aligned_cols=107 Identities=20% Similarity=0.314 Sum_probs=89.2
Q ss_pred cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
+++++++++.++.++++.|.+++++.+||+++++++|+++..++++.....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~~~~~~~----------------------------- 51 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAHAIARG----------------------------- 51 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhcc-----------------------------
Confidence 467889999999999999999999999999889999999999987541100
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
....++.+++. .++.+++++.++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus 52 ----------~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~ 108 (110)
T cd04588 52 ----------LELAKVKDVMT--KDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDIL 108 (110)
T ss_pred ----------ccccCHHHHhc--CCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhh
Confidence 00123455554 6789999999999999999999999999998 69999999999985
No 121
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=3.7e-11 Score=89.86 Aligned_cols=108 Identities=27% Similarity=0.355 Sum_probs=89.7
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
++.++.+++++.++++.|.+.+.+.+||++ +++++|+++..++.+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~----------------------------- 52 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALES----------------------------- 52 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhh-----------------------------
Confidence 467889999999999999999999999998 58999999999997542210
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
..+...++.++|. .++.++.+++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus 53 --------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~ 111 (113)
T cd04615 53 --------EELKDAKVREVMN--SPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDIL 111 (113)
T ss_pred --------hhhcCCcHHHhcc--CCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhh
Confidence 0122234566665 6789999999999999999999999999998 78999999999985
No 122
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.33 E-value=3.9e-11 Score=89.30 Aligned_cols=108 Identities=23% Similarity=0.286 Sum_probs=89.0
Q ss_pred cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
+++.+++++.++.++++.|.+.+..++||+++++++|+++..++.+......
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~---------------------------- 52 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIRRVPAEGR---------------------------- 52 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHHHHHhcCc----------------------------
Confidence 4678899999999999999999999999998899999999999875321000
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
....++.++|. .++.++.+++++.++++.|.+++.+.+||++ +++++|++|..|++
T Consensus 53 ----------~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~ 109 (111)
T cd04612 53 ----------EATVLVGDVMT--RDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLL 109 (111)
T ss_pred ----------ccccCHHHhcc--CCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhh
Confidence 00012444554 6789999999999999999999999999998 69999999999985
No 123
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=2.3e-11 Score=90.31 Aligned_cols=103 Identities=14% Similarity=0.249 Sum_probs=87.8
Q ss_pred cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (308)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (308)
.++.++++++++.++++.|.+++...+||++ +|+++|+++..++....
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~------------------------------- 50 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD------------------------------- 50 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc-------------------------------
Confidence 3678999999999999999999999999998 68999999999985310
Q ss_pred hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
...++.++|. ..+.+++++.++.++++.|.+++.+.+||++ +|+++|++|..|++
T Consensus 51 ------------~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~ 106 (108)
T cd04596 51 ------------PDTTIEKVMT--KNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVL 106 (108)
T ss_pred ------------ccccHHHHhc--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhh
Confidence 0123455564 5788999999999999999999999999998 88999999999985
No 124
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=3.1e-11 Score=91.96 Aligned_cols=120 Identities=28% Similarity=0.378 Sum_probs=91.1
Q ss_pred cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-C-CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCC
Q 021709 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 126 (308)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~-~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (308)
+++.++.++.++.+++++|.+.+...+||++ + |+++|+++..+++........... . ..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~--~--------------~~--- 61 (125)
T cd04631 1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNK--I--------------KT--- 61 (125)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhcc--c--------------cc---
Confidence 4677899999999999999999999999998 4 899999999999764321100000 0 00
Q ss_pred ChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 127 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
.. .......++.+++. .++.++++++++.++++.|.+.+.+.+||++ +|+++|+||..|++
T Consensus 62 --~~-----~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~ 123 (125)
T cd04631 62 --GN-----GLEAINEPVRSIMT--RNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123 (125)
T ss_pred --cc-----cchhhhcCHHHHhc--CCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhh
Confidence 00 00011234556665 6799999999999999999999999999998 69999999999995
No 125
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.33 E-value=5.4e-11 Score=88.54 Aligned_cols=107 Identities=19% Similarity=0.261 Sum_probs=89.1
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (308)
++.++++++++.++++.|.+++.+.+||+++++++|+++..++.+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~~~~~~~----------------------------- 52 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILRLLASGP----------------------------- 52 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHHHHhcCC-----------------------------
Confidence 467899999999999999999999999999899999999999875422100
Q ss_pred HHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
....++.++|. .++.++++++++.++++.|.+.+.+.+||++ +|+++|+++.+|++
T Consensus 53 ---------~~~~~v~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~ 109 (111)
T cd04611 53 ---------DLQTPVGEVMS--SPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLL 109 (111)
T ss_pred ---------CCCcCHHHhcC--CCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhh
Confidence 01233556665 6788999999999999999999999999998 69999999999985
No 126
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=1.5e-11 Score=91.87 Aligned_cols=94 Identities=35% Similarity=0.615 Sum_probs=79.6
Q ss_pred CCCCCcCEEEEECCCCcEEEEEehhHHHHHHHHhccCCcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC
Q 021709 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN 80 (308)
Q Consensus 1 m~~~~~~~~~V~~~~~~~~Giit~~D~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~ 80 (308)
|.++++..+||++++++++|+++..|+++.+..........++.++|.+++.++.+++++.++++.|.+.+.+.+||+++
T Consensus 19 ~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~ 98 (113)
T cd04623 19 MAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG 98 (113)
T ss_pred HHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC
Confidence 34567889999998889999999999985554332223345789999889999999999999999999999999999988
Q ss_pred CeEEEEEeHHHHHH
Q 021709 81 GEVIALLDIAKCLY 94 (308)
Q Consensus 81 ~~~vGivs~~dll~ 94 (308)
|+++|+++..++++
T Consensus 99 ~~~~Gvit~~di~~ 112 (113)
T cd04623 99 GKLVGIVSIGDVVK 112 (113)
T ss_pred CEEEEEEEHHHhhc
Confidence 99999999999864
No 127
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=5.1e-11 Score=88.94 Aligned_cols=110 Identities=22% Similarity=0.298 Sum_probs=89.8
Q ss_pred cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
+++.+++++.++.++++.|.+.+.+.+||+++++++|+++..++++......
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~---------------------------- 52 (112)
T cd04802 1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRN---------------------------- 52 (112)
T ss_pred CCcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhcc----------------------------
Confidence 3567899999999999999999999999999789999999999986432100
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~ 196 (308)
......++.++|. .++.++.+++++.++++.|.+.+.+.+||+++++++|+++..|++
T Consensus 53 --------~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~di~ 110 (112)
T cd04802 53 --------LKPREVPVGEVMS--TPLITIDPNASLNEAAKLMAKHGIKRLPVVDDDELVGIVTTTDIV 110 (112)
T ss_pred --------CCcccCCHHHhcC--CCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCCEEEEEEEhhhhh
Confidence 0001223556665 678899999999999999999999999999955999999999985
No 128
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.32 E-value=5.6e-11 Score=87.70 Aligned_cols=99 Identities=20% Similarity=0.177 Sum_probs=84.9
Q ss_pred eEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHH
Q 021709 52 TFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTF 131 (308)
Q Consensus 52 ~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (308)
+++++++++.++++.|.+.+...+||+++++++|+++..++.+..
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~----------------------------------- 48 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIENAT----------------------------------- 48 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHhhhc-----------------------------------
Confidence 478999999999999999999999999889999999999986420
Q ss_pred HHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709 132 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (308)
Q Consensus 132 ~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~ 196 (308)
..++.++|. ..+.++.++.++.++++.|.+++.+.+||+++|+++|++|.+|++
T Consensus 49 ---------~~~~~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~iGvit~~dl~ 102 (104)
T cd04594 49 ---------YGDVVDYIV--RGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDDGKFKGIVTLDSIL 102 (104)
T ss_pred ---------ccchhhhhh--cCCcEEcCCCCHHHHHHHHHHcCcceEEEEECCEEEEEEEHHHhh
Confidence 011344454 568899999999999999999999999999989999999999985
No 129
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=3.9e-11 Score=89.49 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=88.8
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
++.+++++.++.++++.|.+++++.+||++ +|+++|+++..+++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~----------------------------- 52 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFE----------------------------- 52 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhc-----------------------------
Confidence 567899999999999999999999999998 59999999999987531100
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~ 196 (308)
.....++.++|. +++.++.+++++.++++.|.+++.+.+||+++|+++|++|..|++
T Consensus 53 ---------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~di~ 109 (111)
T cd04626 53 ---------SFLEKKVFNIVS--QDVFYVNEEDTIDEALDIMREKQIGRLPVVDDNKLIGVVRTKDIL 109 (111)
T ss_pred ---------ccccCcHHHHhc--CCcEEEcCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEhHHhc
Confidence 001123555665 678899999999999999999999999999888999999999985
No 130
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.32 E-value=7e-11 Score=88.10 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=89.2
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (308)
++++++++.++.++++.|.+++...+||+++++++|+++..++++.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~------------------------------ 51 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVLLD------------------------------ 51 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHHHcC------------------------------
Confidence 56789999999999999999999999999888999999999987532100
Q ss_pred HHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (308)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~ 196 (308)
......++.++|. .++..+++++++.++++.|.+++.+.+||+++++++|++|..|++
T Consensus 52 -------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~dl~ 109 (111)
T cd04589 52 -------GLPSSTPVGEIAT--FPLITVDPDDFLFNALLLMTRHRIHRVVVREGGEVVGVLEQTDLL 109 (111)
T ss_pred -------CCCCCCCHHHHhC--CCcEEECCCCcHHHHHHHHHHhCccEEEEeeCCEEEEEEEhHHhh
Confidence 0011233556665 678899999999999999999999999999988999999999985
No 131
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.32 E-value=3.8e-11 Score=90.87 Aligned_cols=119 Identities=27% Similarity=0.376 Sum_probs=92.1
Q ss_pred cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
+++.+++++.++.++++.|.+.++..+||+++|+++|+++..++.+......... ..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~~~~~~~~~~~-----------------------~~ 57 (122)
T cd04585 1 KNPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASPSKATTL-----------------------DI 57 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHHHhhhcccccc-----------------------cc
Confidence 3577899999999999999999999999998899999999999976422110000 00
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
.. ........++.++|. +++.++++++++.+++..|.+.+.+.+||++ +|+++|++|..|++
T Consensus 58 ~~----~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~ 120 (122)
T cd04585 58 WE----LYYLLSKIKVSDIMT--RDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLF 120 (122)
T ss_pred hh----hhhhhcccCHHHhcc--CCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhh
Confidence 00 000012334666776 6789999999999999999999999999998 69999999999996
No 132
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=4.8e-11 Score=90.39 Aligned_cols=119 Identities=24% Similarity=0.271 Sum_probs=92.4
Q ss_pred cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
++++++.+++++.++++.|.+++++.+||+++|+++|+++..++.+..........
T Consensus 1 ~~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~~------------------------ 56 (121)
T cd04633 1 KPVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLVR------------------------ 56 (121)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhhhhhhccc------------------------
Confidence 36778999999999999999999999999999999999999998754321110000
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~ 196 (308)
...........++.++|. .++.++.+++++.++++.|.+.+.+.+||+++++++|++|..|++
T Consensus 57 ---~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~dl~ 119 (121)
T cd04633 57 ---DRHQERRIRNLPVSDIMT--RPVITIEPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDIL 119 (121)
T ss_pred ---chhhhhhhhccCHHHHcc--CCceEECCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEHHHhh
Confidence 000011122334566665 678899999999999999999999999999889999999999995
No 133
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.32 E-value=4.4e-11 Score=89.85 Aligned_cols=108 Identities=19% Similarity=0.293 Sum_probs=88.7
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
++.++++++++.++++.|.+.+...+||++ +|+++|+++..++.+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~---------------------------- 53 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADE---------------------------- 53 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccc----------------------------
Confidence 567889999999999999999999999998 589999999999975422100
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C--CEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E--NKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~--~~~~Givt~~dl~ 196 (308)
.....++.++|. .++.++.+++++.+++++|.+++.+.+||++ + |+++|++|.+|++
T Consensus 54 ---------~~~~~~~~~~~~--~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~ 113 (115)
T cd04593 54 ---------AGEPSAVDEVAT--PPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVL 113 (115)
T ss_pred ---------ccccccHHHhcc--CCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhh
Confidence 001122455565 6789999999999999999999999999998 5 7999999999996
No 134
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.31 E-value=7.2e-11 Score=87.56 Aligned_cols=104 Identities=20% Similarity=0.269 Sum_probs=88.2
Q ss_pred cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (308)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (308)
+++.+++++.++.++++.|.++++..+||++ +++++|+++..+++....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~------------------------------ 51 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYK------------------------------ 51 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhh------------------------------
Confidence 4577899999999999999999999999998 589999999999865310
Q ss_pred hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
...++.++|. ..+..+++++++.++++.|.+.+.+.+||++ +|+++|++|.+|++
T Consensus 52 ------------~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~ 107 (109)
T cd04583 52 ------------EAKSLEDIML--EDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLV 107 (109)
T ss_pred ------------cCCcHhHhhc--CCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhh
Confidence 0123455565 5788999999999999999999999999998 78999999999985
No 135
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=3.2e-11 Score=90.29 Aligned_cols=107 Identities=18% Similarity=0.210 Sum_probs=88.5
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
++++++++.++.++++.|.+.+.+.+||++ +|+++|+++..++++.....
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~----------------------------- 53 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKG----------------------------- 53 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcC-----------------------------
Confidence 456889999999999999999999999997 68999999999987532210
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
.....++.++|. ..+.++.+++++.++++.|.+.+.+.+||++ +|+++|++|.+|++
T Consensus 54 ---------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 111 (113)
T cd04607 54 ---------LSLDDPVSEVMN--RNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL 111 (113)
T ss_pred ---------CCcCCCHHHhhc--CCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence 001223556665 6788999999999999999999999999998 88999999999985
No 136
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.30 E-value=5.6e-11 Score=88.83 Aligned_cols=110 Identities=23% Similarity=0.265 Sum_probs=89.6
Q ss_pred cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
+++.++++++++.+|.+.|.+++.+.+||+++|+++|+++..+++.......
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~~---------------------------- 52 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEG---------------------------- 52 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhcc----------------------------
Confidence 3577899999999999999999999999998899999999999863311100
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
......++.++|. ..+.++.+++++.++++.|.+.+.+++||++ +++++|++|..|++
T Consensus 53 --------~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~ 111 (113)
T cd04622 53 --------RDPDTTTVGDVMT--RGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLA 111 (113)
T ss_pred --------CCcccCCHHHhcc--CCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhh
Confidence 0001123566665 6788999999999999999999999999998 68999999999985
No 137
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=5.7e-11 Score=88.67 Aligned_cols=108 Identities=21% Similarity=0.264 Sum_probs=89.2
Q ss_pred cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (308)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (308)
+++.+++++.++.++++.|.+.++..+||++ +++++|+++..++++.....
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~---------------------------- 52 (112)
T cd04624 1 RPVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAG---------------------------- 52 (112)
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhcc----------------------------
Confidence 3567899999999999999999999999998 58999999999987542210
Q ss_pred hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
.....++.++|. .++.++.+++++.++++.|.+++...+||++ +|++.|++|..|++
T Consensus 53 ----------~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~ 110 (112)
T cd04624 53 ----------IDLDTPVSEIMT--RDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLV 110 (112)
T ss_pred ----------CCCccCHHHhcc--CCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhc
Confidence 001223556665 6788999999999999999998899999998 69999999999985
No 138
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.30 E-value=3.9e-11 Score=92.93 Aligned_cols=130 Identities=22% Similarity=0.293 Sum_probs=93.8
Q ss_pred cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHH-HHHhHHHHHHHhhhhhhccCCCCC
Q 021709 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMER-AAEKGKAIAAAVEGVEKHWGTSIS 126 (308)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 126 (308)
+++.++.++.++.++++.|.+++.+++||++ +++++|+++..++.+........ ....... . .
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~----~-----------~ 66 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDL----L-----------A 66 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHH----h-----------c
Confidence 5678999999999999999999999999998 58999999999997643221100 0000000 0 0
Q ss_pred ChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709 127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (308)
Q Consensus 127 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~ 196 (308)
.... ...........++.++|. +++.++.+++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus 67 ~~~~-~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~~di~ 133 (135)
T cd04586 67 GAEE-LAAAFVRSHGRKVADVMT--RPVVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSRADLL 133 (135)
T ss_pred chHH-HHHHHHHhcCCCHHHHhC--CCceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEhHhhh
Confidence 0000 000000112345777776 679999999999999999999999999999988999999999985
No 139
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=7.6e-11 Score=87.18 Aligned_cols=103 Identities=21% Similarity=0.340 Sum_probs=87.6
Q ss_pred cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
+++.+++.+.++.++++.|.+.+...+||+++++++|+++..+++..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~~~--------------------------------- 48 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGK--------------------------------- 48 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhcc---------------------------------
Confidence 46788999999999999999888889999988999999999998631
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
....++.++|. ..+.++.+++++.++++.|.+++...+||++ +|+++|+++..|++
T Consensus 49 ----------~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~ 105 (107)
T cd04610 49 ----------DPDETVEEIMS--KDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVI 105 (107)
T ss_pred ----------CccccHHHhCC--CCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhh
Confidence 00123556665 6688899999999999999999999999998 78999999999985
No 140
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=1.3e-10 Score=88.09 Aligned_cols=118 Identities=27% Similarity=0.299 Sum_probs=90.2
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (308)
++++++++.++.++++.|.++++..+||+++|+++|+++..++.+..........+.. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~~~~~~~~~---------------------~ 60 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYLKAISPFLGTAGETE---------------------K 60 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHHHHHHHhccccchH---------------------H
Confidence 5678999999999999999999999999998999999999999765332111000000 0
Q ss_pred HHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
. .. ....++.++|. .++..+.+++++.++++.|.+++...+||++ +++++|++|..|++
T Consensus 61 ~----~~--~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll 120 (122)
T cd04637 61 D----LA--TLNRRAHQIMT--RDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLL 120 (122)
T ss_pred H----HH--HHHhHHHHhhc--CCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhh
Confidence 0 00 00112455554 6789999999999999999999999999998 68999999999996
No 141
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=7.6e-11 Score=89.43 Aligned_cols=117 Identities=22% Similarity=0.353 Sum_probs=90.8
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEeeC-CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
++.++.+++++.++.+.|.+.+++.+||+++ |+++|+++..++++..........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~------------------------ 57 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNG------------------------ 57 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhcccccccc------------------------
Confidence 5778999999999999999999999999984 899999999998764321100000
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
.... ......++.+++. .++.++.+++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus 58 ~~~~----~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~ 120 (122)
T cd04803 58 EESL----TKERDVPVAEVMK--TDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFL 120 (122)
T ss_pred cccc----ccccCcCHHHhhC--CCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhh
Confidence 0000 0112334566665 6788999999999999999999999999998 58999999999985
No 142
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.28 E-value=1.1e-10 Score=108.80 Aligned_cols=114 Identities=12% Similarity=0.138 Sum_probs=95.2
Q ss_pred cccccc---cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 021709 43 VSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE 115 (308)
Q Consensus 43 v~~im~---~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~----~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~ 115 (308)
++++|. ..+.++++++++.+|+++|.++++..+||+++ ++++|+++..|+...
T Consensus 96 Vk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~-------------------- 155 (502)
T PRK07107 96 VKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS-------------------- 155 (502)
T ss_pred HHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc--------------------
Confidence 445553 34569999999999999999999999999984 799999999998421
Q ss_pred hhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHH
Q 021709 116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD 194 (308)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~d 194 (308)
......++.++|++.++++++.+++++.+++++|.+++++.+||+| +++++|+||.+|
T Consensus 156 ---------------------~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~D 214 (502)
T PRK07107 156 ---------------------RMSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKD 214 (502)
T ss_pred ---------------------ccCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHH
Confidence 0012345788887445889999999999999999999999999999 789999999999
Q ss_pred HHH
Q 021709 195 ILM 197 (308)
Q Consensus 195 l~~ 197 (308)
+++
T Consensus 215 ilk 217 (502)
T PRK07107 215 YDS 217 (502)
T ss_pred HHh
Confidence 973
No 143
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=6e-11 Score=90.76 Aligned_cols=121 Identities=20% Similarity=0.251 Sum_probs=88.1
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
.+.++++++++.+|++.|.++++..+||++ +|+++|+++..|+.+.......... .+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~----------------------~~ 59 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLL----------------------YR 59 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhc----------------------cc
Confidence 567899999999999999999999999998 5899999999998764321100000 00
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
......+.. ......+.+. .++.++++++++.++++.|.+++.+++||++ +++++|++|.+|++
T Consensus 60 ~~~~~~~~~--~~~~~~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil 124 (126)
T cd04642 60 TITFKELSE--KFTDSDGVKS--RPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDII 124 (126)
T ss_pred chhhhhhhh--hccccccccc--CCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHh
Confidence 000000000 0011123343 6789999999999999999999999999998 68999999999996
No 144
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.28 E-value=1.1e-10 Score=87.24 Aligned_cols=109 Identities=15% Similarity=0.179 Sum_probs=89.0
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (308)
++.++.++.++.++++.|.+++.+.+||+++++++|+++..+++.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~----------------------------- 52 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQG----------------------------- 52 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhcC-----------------------------
Confidence 567899999999999999999999999998899999999999874322100
Q ss_pred HHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
......++.++|. ..+.++.+++++.++++.|.+++..++||++ +++++|++|..|++
T Consensus 53 -------~~~~~~~v~~i~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~ 111 (113)
T cd04587 53 -------LDPESTLVERVMT--PNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLT 111 (113)
T ss_pred -------CCcCcCCHHHhcC--CCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhc
Confidence 0000134566665 6788999999999999999999999999998 68999999999985
No 145
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.27 E-value=1.9e-11 Score=93.40 Aligned_cols=109 Identities=22% Similarity=0.337 Sum_probs=88.8
Q ss_pred cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (308)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (308)
+++.+++++.++.++++.|.+++++.+||++ +++++|+++..++++......
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~--------------------------- 54 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGK--------------------------- 54 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhc---------------------------
Confidence 5688999999999999999999999999998 589999999999876432110
Q ss_pred hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHH---------cCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE---------LRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~---------~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
.....++.++|. .++.++.+++++.++.+++.. .+.+++||++ +|+++|+||.+|++
T Consensus 55 ----------~~~~~~v~~im~--~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~ 121 (124)
T cd04608 55 ----------VQPSDPVSKALY--KQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLL 121 (124)
T ss_pred ----------cCCCCcHHHHhh--ccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhh
Confidence 012346888887 789999999999999996543 2566777887 68999999999996
No 146
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.27 E-value=8.6e-11 Score=88.20 Aligned_cols=108 Identities=18% Similarity=0.232 Sum_probs=85.8
Q ss_pred CceEEeCCCcHHHHHHHhHhCC-CcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGK-FRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~-~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
++.+++++.++.++++.|.+++ ...+||.++|+++|+++..++++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~---------------------------- 53 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTAIGK---------------------------- 53 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHHHHhcCC----------------------------
Confidence 5678899999999999998888 66778878899999999999975421100
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCC--CcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPT--DTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
.....++.++|. .++.++.++ +++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus 54 ---------~~~~~~i~~~~~--~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~ 113 (115)
T cd04620 54 ---------DLSDLPIGEVMT--QPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIR 113 (115)
T ss_pred ---------CccccCHHHhcC--CCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhh
Confidence 001133556665 567778776 7899999999999999999998 79999999999995
No 147
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=1e-10 Score=90.22 Aligned_cols=128 Identities=17% Similarity=0.203 Sum_probs=93.8
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
++.++++++++.++++.|.+.+.+++||++ +++++|+++..++++.......... .........
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~---------------~~~~~~~~~ 66 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFY---------------VTLLYSVIF 66 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCccc---------------ccccccccc
Confidence 567899999999999999999999999998 5899999999998764321100000 000000000
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~ 196 (308)
.. ..........++.++|. +++..+.+++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus 67 ~~--~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~~dl~ 130 (132)
T cd04636 67 LD--ESKIKKLLGKKVEEIMT--KKVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISRGDII 130 (132)
T ss_pred cc--hHHHHHHcCCCHHHhcc--CCceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEHHHhh
Confidence 00 11222233346777876 678999999999999999999999999999989999999999996
No 148
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=9.7e-11 Score=87.95 Aligned_cols=111 Identities=15% Similarity=0.263 Sum_probs=86.9
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
+++++++++++.++++.|.++++..+||++ +++++|+++..++++.........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~------------------------- 56 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLD------------------------- 56 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchh-------------------------
Confidence 467899999999999999999999999998 589999999999976432100000
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
.. .+...++.++|. +.+.++++++++.++++.|.+.+ .+||++ +++++|++|..|++
T Consensus 57 ---~~----~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil 114 (116)
T cd04643 57 ---LE----RLVDLKVIDVMN--TDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREIL 114 (116)
T ss_pred ---HH----HHhCCcHHHHhc--CCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhh
Confidence 00 012334666675 67999999999999999998754 589998 79999999999985
No 149
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.26 E-value=5.3e-11 Score=114.09 Aligned_cols=122 Identities=12% Similarity=0.151 Sum_probs=100.8
Q ss_pred CcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 021709 38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (308)
Q Consensus 38 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~ 116 (308)
....+++|+|.+++.++++++++.++.+.|.+++.+.+||+| +++++|+++..|+.+......
T Consensus 444 L~~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~---------------- 507 (574)
T PRK01862 444 LRTTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKR---------------- 507 (574)
T ss_pred HhhCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccc----------------
Confidence 445689999999999999999999999999999999999998 589999999999875422100
Q ss_pred hhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C--CEEEEEeeHH
Q 021709 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E--NKPRGILTSK 193 (308)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~--~~~~Givt~~ 193 (308)
.....++.++|. +++.++++++++.++++.|.+++.+.+||+| + ++++|++|++
T Consensus 508 ---------------------~~~~~~v~dim~--~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~ 564 (574)
T PRK01862 508 ---------------------DTTDKTAADYAH--TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKT 564 (574)
T ss_pred ---------------------ccccchHHHhcc--CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHH
Confidence 001123566776 6788999999999999999999999999998 4 4899999999
Q ss_pred HHHHH
Q 021709 194 DILMR 198 (308)
Q Consensus 194 dl~~~ 198 (308)
|+++.
T Consensus 565 DIl~~ 569 (574)
T PRK01862 565 SLLDA 569 (574)
T ss_pred HHHHH
Confidence 99744
No 150
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=2e-10 Score=87.97 Aligned_cols=121 Identities=30% Similarity=0.362 Sum_probs=90.2
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
++.++.++.++.+|++.|.+.+.+.+||++ +++++|+++..++...............
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~--------------------- 60 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGD--------------------- 60 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhh---------------------
Confidence 567899999999999999999999999998 5899999999998754322110000000
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee---CCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~~~~~Givt~~dl~ 196 (308)
... ........++.++|. .++++++++.++.++++.|.+.+...+||++ +++++|+||.+|++
T Consensus 61 --~~~-~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~ 126 (128)
T cd04632 61 --RSG-EKERMLDLPVYDAMS--SPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVL 126 (128)
T ss_pred --hhh-hhhhhccCcHHHHhc--CCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhh
Confidence 000 000112234667776 6789999999999999999999899999985 48999999999985
No 151
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.26 E-value=2.6e-11 Score=115.63 Aligned_cols=135 Identities=16% Similarity=0.162 Sum_probs=97.7
Q ss_pred CChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhc--
Q 021709 126 SGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ-- 202 (308)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~-- 202 (308)
.++.+.+..........++.++|.+ +++.++++++++.++.+.|.+++.+.+||+| +|+++|++|.+|++. ....
T Consensus 230 ~t~~dt~~t~~~l~~~~~V~~iM~~-~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~-~~~~~~ 307 (546)
T PRK14869 230 STPYDTFTTARLINQSIPVSYIMTT-EDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLS-PVRKKV 307 (546)
T ss_pred EecccHHHHHHHhhcCCCHHHhccC-CCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhc-cccCce
Confidence 3444555555566667789999962 5799999999999999999999999999999 899999999999973 2221
Q ss_pred -------------CCCccc-------cccccccccCceee---cCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhh
Q 021709 203 -------------NLPADS-------TLVEKVMTPNPECA---TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVI 259 (308)
Q Consensus 203 -------------~~~~~~-------~~v~~~~~~~~~~v---~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~ 259 (308)
+..... -++.+++...|..+ +...+..-+.++|.+.++...|++. ...+.||+|-+
T Consensus 308 iLVD~~e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia-~~ll~gIlsDT 386 (546)
T PRK14869 308 ILVDHNEKSQAVEGIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA-GLLLAAILSDT 386 (546)
T ss_pred EEEcCccccccccchhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHh
Confidence 000000 02344555555444 3366677888899999988888775 45788888777
Q ss_pred HHHH
Q 021709 260 HITH 263 (308)
Q Consensus 260 di~~ 263 (308)
+.++
T Consensus 387 ~~f~ 390 (546)
T PRK14869 387 LLFK 390 (546)
T ss_pred cCcc
Confidence 7665
No 152
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.25 E-value=5.9e-11 Score=102.86 Aligned_cols=164 Identities=16% Similarity=0.186 Sum_probs=134.1
Q ss_pred CCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee--CCEEEEEeeHHHHHHHHHhcCCCccccccccccccC
Q 021709 141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN 218 (308)
Q Consensus 141 ~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~ 218 (308)
+-++.|+|.+++++..+..+.+.+++.+.+....+.++|+-. -+.++|++..+|++ +++.+........+.... .+
T Consensus 199 ~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~ll-r~l~e~~~~~k~d~~~~a-~e 276 (423)
T COG4536 199 NLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLL-RLLNEKNEFTKEDILRAA-DE 276 (423)
T ss_pred cceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHH-HHhhccCcccHhHHHHHh-cC
Confidence 456899999999999999999999999999999999999986 34599999999997 666554433333333333 58
Q ss_pred ceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcCCCCCCC-----------cchhhhHHHH
Q 021709 219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNN-----------EAASTMMQKF 287 (308)
Q Consensus 219 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 287 (308)
|.+|+..+++.+-+..|..++.+...||||.|.+.|+||..||++.+++.....++... -.+...--+.
T Consensus 277 pyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde~d~~~~ev~~q~dgs~iidGs~~iRd 356 (423)
T COG4536 277 PYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDEHDTLAKEVIPQSDGSFIIDGSANVRD 356 (423)
T ss_pred CeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhccccccCcccchhhcccCCCcEEEeCCCcHHH
Confidence 99999999999999999999999999999999999999999999999988875433211 1344444678
Q ss_pred HHhhccCCCCCchhhhccc
Q 021709 288 WDSAMALSPNDDEEDNRRF 306 (308)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~ 306 (308)
.|..+.-+++.++.-|..|
T Consensus 357 lNr~l~W~Lp~e~a~TinG 375 (423)
T COG4536 357 LNRALDWNLPDEDARTING 375 (423)
T ss_pred HHHhcCCCCCCCcchhHHH
Confidence 8888899999888888765
No 153
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=1.3e-10 Score=88.21 Aligned_cols=118 Identities=23% Similarity=0.389 Sum_probs=90.4
Q ss_pred cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (308)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (308)
+++.++.++.++.++++.|.+.+++.+||++ +|+++|+++..++++........
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~------------------------- 55 (122)
T cd04635 1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSV------------------------- 55 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccc-------------------------
Confidence 3577899999999999999999999999998 59999999999987542110000
Q ss_pred hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
... .........++.+++. .++.++++++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus 56 -~~~--~~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~ 120 (122)
T cd04635 56 -EDQ--QRTQTKASPTVEKIMS--TPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVL 120 (122)
T ss_pred -cch--hhhhhhccCcHHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhh
Confidence 000 0000012233556665 6789999999999999999999999999998 78999999999986
No 154
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=8.8e-11 Score=89.86 Aligned_cols=114 Identities=21% Similarity=0.249 Sum_probs=84.4
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
++.++.+++++.++++.|.+++.+.+||++ +|+++|+++..|+.+........ +.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~--~~---------------------- 57 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQ--EG---------------------- 57 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHH--Hc----------------------
Confidence 467899999999999999999999999998 58999999999987532110000 00
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCcee--Ee----CCCCcHHHHHHHHHHcCCcEEEEee-C-CEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVV--TI----SPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~--~v----~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~ 196 (308)
.......++.++|. +++. .+ .+++++.++++.|.+++.+.+||++ + |.++|+||.+|++
T Consensus 58 -------~~~~~~~~v~~im~--~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~ 124 (126)
T cd04640 58 -------GISRSELTVADVMT--PKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIA 124 (126)
T ss_pred -------CCCchheEHHHhcC--chhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHh
Confidence 00011223556665 3332 23 3688999999999999999999999 5 7999999999995
No 155
>PRK11573 hypothetical protein; Provisional
Probab=99.24 E-value=4.8e-10 Score=102.62 Aligned_cols=190 Identities=12% Similarity=0.142 Sum_probs=135.7
Q ss_pred HHHhccCCccccccccccc--CceEEeCCCcHHHHHHHhHhCCCcEeeEeeC--CeEEEEEeHHHHHHHHHHHHHHHHHh
Q 021709 31 VIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEK 106 (308)
Q Consensus 31 ~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~--~~~vGivs~~dll~~~~~~~~~~~~~ 106 (308)
++.+..++.+.+++++|.+ .+++++.+.++.++++.+.+++++++||.++ +.++|++..+|++.......
T Consensus 177 mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~------ 250 (413)
T PRK11573 177 MLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK------ 250 (413)
T ss_pred HHHHHhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC------
Confidence 3345567888899999985 7899999999999999999999999999974 78999999999985311000
Q ss_pred HHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCE
Q 021709 107 GKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENK 185 (308)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~ 185 (308)
. .....+.+++ +++..++++.++.++++.|++++.+.+.|+| .|.
T Consensus 251 ----------------------~---------~~~~~l~~~~---r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~ 296 (413)
T PRK11573 251 ----------------------E---------FTKENMLRAA---DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGD 296 (413)
T ss_pred ----------------------c---------CCHHHHHhhc---cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCC
Confidence 0 0000122333 4688999999999999999999999999999 799
Q ss_pred EEEEeeHHHHHHHHHhcCCCcccc----ccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHH
Q 021709 186 PRGILTSKDILMRVISQNLPADST----LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHI 261 (308)
Q Consensus 186 ~~Givt~~dl~~~~~~~~~~~~~~----~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di 261 (308)
..|+||..|++..+..+-.+..+. .+... ..+...++...++.++.+.+.- + +| ++ ..=|...+
T Consensus 297 ~~GiVTleDilEeivGei~de~d~~~~~~i~~~-~~~~~~v~G~~~l~d~~~~l~~-~---l~---~~----~~~Tl~G~ 364 (413)
T PRK11573 297 IQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQ-NDGSVIIDGTANVREINKAFNW-H---LP---ED----DARTVNGV 364 (413)
T ss_pred eEEEeeHHHHHHHHhCCCCcccCcccccceEEe-cCCEEEEEeeeEHHHHHHHhCC-C---CC---CC----CCeeHHHH
Confidence 999999999997777543222111 11111 2345678888899988888732 2 33 11 23466666
Q ss_pred HHHHHHHhcCC
Q 021709 262 THAAVATVGNT 272 (308)
Q Consensus 262 ~~~~~~~~~~~ 272 (308)
+-..++..+..
T Consensus 365 i~~~lg~iP~~ 375 (413)
T PRK11573 365 ILEALEEIPVA 375 (413)
T ss_pred HHHHhCcCCCC
Confidence 66666665553
No 156
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.24 E-value=2e-10 Score=85.49 Aligned_cols=105 Identities=16% Similarity=0.204 Sum_probs=85.8
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEee-C-CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~-~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (308)
++++++++.++.+|++.|.+++...+||++ + ++++|+++..++++.....
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~---------------------------- 53 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEG---------------------------- 53 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcC----------------------------
Confidence 467899999999999999999999999997 5 8999999999987542100
Q ss_pred hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
....++.+++ .++.++.+++++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus 54 -----------~~~~~~~~~~---~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 109 (111)
T cd04590 54 -----------EEDLDLRDLL---RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDIL 109 (111)
T ss_pred -----------CCcCCHHHHh---cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhh
Confidence 0001233333 3578899999999999999999999999998 69999999999985
No 157
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.24 E-value=6.1e-10 Score=104.01 Aligned_cols=112 Identities=10% Similarity=0.077 Sum_probs=95.6
Q ss_pred ccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhcc
Q 021709 46 VMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHW 121 (308)
Q Consensus 46 im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~----~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (308)
.|.++++++++++++.+|+++|.++++..+||+++ ++++|+|+..|+....
T Consensus 105 gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~------------------------- 159 (505)
T PLN02274 105 GFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN------------------------- 159 (505)
T ss_pred cccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-------------------------
Confidence 36789999999999999999999999999999985 7999999999985210
Q ss_pred CCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHH
Q 021709 122 GTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV 199 (308)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~ 199 (308)
....++.++|++..+++++++++++.++++.|.+++.+.+||++ +++++|+||.+|+++..
T Consensus 160 -----------------~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~ 221 (505)
T PLN02274 160 -----------------DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVK 221 (505)
T ss_pred -----------------ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHh
Confidence 12345778887433488999999999999999999999999998 89999999999997444
No 158
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.23 E-value=2.2e-10 Score=84.80 Aligned_cols=97 Identities=18% Similarity=0.222 Sum_probs=84.3
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCC
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSI 125 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~----~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (308)
....+.+++++.++...|.+.+...+||+++ |+++|+++..++.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~--------------------------- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN--------------------------- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------------
Confidence 3567899999999999999999999999975 899999999998643110
Q ss_pred CChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709 126 SGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (308)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~ 196 (308)
+|. .++.++++++++.++++.|.+++.+.+||+++|+++|++|.+|++
T Consensus 56 ---------------------~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~~~~~Gvvt~~dl~ 103 (105)
T cd04591 56 ---------------------YID--PSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDEGRLVGIITRKDLL 103 (105)
T ss_pred ---------------------hcc--CCCceECCCCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEhhhhh
Confidence 343 578899999999999999999999999999989999999999995
No 159
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.23 E-value=7.2e-11 Score=88.24 Aligned_cols=93 Identities=24% Similarity=0.421 Sum_probs=79.3
Q ss_pred CCCCCcCEEEEECCCCcEEEEEehhHHHHHHHHhccCCcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC
Q 021709 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN 80 (308)
Q Consensus 1 m~~~~~~~~~V~~~~~~~~Giit~~D~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~ 80 (308)
|.+.+++.+||++.+++++|+++..|+.+ +..........++.++|.+++.++++++++.++++.|.+.+...+||+++
T Consensus 19 ~~~~~~~~~~v~~~~~~~~G~v~~~~l~~-~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~ 97 (114)
T cd04613 19 IAHSPENNFPVVDDDGRLVGIVSLDDIRE-ILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDD 97 (114)
T ss_pred HHhCCCcceeEECCCCCEEEEEEHHHHHH-HHhcccccccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeC
Confidence 45677889999998889999999999974 43433333346899999999999999999999999999999999999986
Q ss_pred --CeEEEEEeHHHHHH
Q 021709 81 --GEVIALLDIAKCLY 94 (308)
Q Consensus 81 --~~~vGivs~~dll~ 94 (308)
++++|+++..+++.
T Consensus 98 ~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 98 DPGKLLGILSRSDLLS 113 (114)
T ss_pred CCCEEEEEEEhHHhhc
Confidence 89999999999863
No 160
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=3.2e-10 Score=88.84 Aligned_cols=139 Identities=19% Similarity=0.247 Sum_probs=93.8
Q ss_pred cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHH-HHHHhHHHHHHHhhhhhhccCCC-CC
Q 021709 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME-RAAEKGKAIAAAVEGVEKHWGTS-IS 126 (308)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~ 126 (308)
++++++++++++.++++.|.+.+++.+||+++++++|+++..++++....... ......+... ... .... ..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~ 74 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLVTHDPSGNLWLPSPLE----LIE--LPLREFI 74 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHHHHHHhccCccccccCCcce----eee--ccchhee
Confidence 36788999999999999999999999999988999999999998764322110 0000000000 000 0000 00
Q ss_pred ChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709 127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (308)
Q Consensus 127 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~ 196 (308)
........... ....++.++|. ..+.++++++++.++++.|.+.+.+.+||+++++++|++|..|++
T Consensus 75 ~~~~~~~~~~~-~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~~Gvvt~~dl~ 141 (143)
T cd04634 75 NWEETKRALTD-AGKMKVRDIMT--KKVITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIVTRGDII 141 (143)
T ss_pred ehHHHHHHHHH-HhcCCHHHHcC--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhh
Confidence 00011111111 12345667776 679999999999999999999999999999888999999999985
No 161
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.22 E-value=9.4e-11 Score=100.64 Aligned_cols=147 Identities=15% Similarity=0.249 Sum_probs=116.2
Q ss_pred EEEEECCCCcEEEEEehhHHHHHHHHhcc-CCcccccccccc--cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeE
Q 021709 8 ALLLTDSNALLCGILTDKDIATRVIAREL-NLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEV 83 (308)
Q Consensus 8 ~~~V~~~~~~~~Giit~~D~~~~~~~~~~-~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~ 83 (308)
++||+..+ .--+|..-.+.+++.+.. .-.=..|.|+|. .....+.+++++.+...+-.+.+..++||++ ..++
T Consensus 157 ~lPvlsts---YDTFTVAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kv 233 (432)
T COG4109 157 GLPVLSTS---YDTFTVATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKV 233 (432)
T ss_pred CCceEEec---ccceeHHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceE
Confidence 45555432 344565555544444321 122246899997 5778999999999999999999999999998 5899
Q ss_pred EEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcH
Q 021709 84 IALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTV 163 (308)
Q Consensus 84 vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~ 163 (308)
+|+++.+|+... ....++..+|+ ++++++.+.+++
T Consensus 234 vGvVt~rDv~~~-------------------------------------------~~~t~ieKVMt--knp~tv~~~tsV 268 (432)
T COG4109 234 VGVVTMRDVLDK-------------------------------------------KPSTTIEKVMT--KNPITVRAKTSV 268 (432)
T ss_pred EEEEEehhhhcC-------------------------------------------CCCccHHHHhc--cCCeeecccchH
Confidence 999999998633 23456788887 889999999999
Q ss_pred HHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhc
Q 021709 164 LMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ 202 (308)
Q Consensus 164 ~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~ 202 (308)
+.+.+.|...++..+||++ +..++|+||++|++..+...
T Consensus 269 Asvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~ 308 (432)
T COG4109 269 ASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMI 308 (432)
T ss_pred HHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHh
Confidence 9999999999999999999 89999999999998665533
No 162
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.22 E-value=1e-10 Score=106.77 Aligned_cols=119 Identities=18% Similarity=0.269 Sum_probs=105.4
Q ss_pred cCCCcccccCCCCceeEeCCCCcHHHHHHHHHHc-----CCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCcccccccc
Q 021709 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK 213 (308)
Q Consensus 140 ~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~ 213 (308)
...+++..|+ ..++++.++.|+.+++.++++. ....++|+| ++++.|+++.++++ ......++++
T Consensus 130 ~e~taG~~Mt--~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll-------~a~~~~~i~~ 200 (451)
T COG2239 130 PEDTAGRIMT--TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL-------TAEPDELLKD 200 (451)
T ss_pred Chhhhhccce--eeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHh-------cCCcHhHHHH
Confidence 3456788888 8999999999999999999954 356789999 88999999999997 2223678999
Q ss_pred ccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (308)
Q Consensus 214 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~ 267 (308)
+|.+.+.++..++..+++.+.+.+++.-.+||||++|+++|+||..|++..+-.
T Consensus 201 im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~e 254 (451)
T COG2239 201 LMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEE 254 (451)
T ss_pred HhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999986653
No 163
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.22 E-value=4.9e-10 Score=104.60 Aligned_cols=113 Identities=10% Similarity=0.153 Sum_probs=97.0
Q ss_pred cccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhh
Q 021709 43 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 118 (308)
Q Consensus 43 v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~----~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (308)
.++.|..+++++++++++.+|+++|.+++++.+||+++ ++++|+++..|+... .
T Consensus 98 ~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~--~-------------------- 155 (495)
T PTZ00314 98 FENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV--K-------------------- 155 (495)
T ss_pred cccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc--c--------------------
Confidence 45677789999999999999999999999999999985 799999999998521 0
Q ss_pred hccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHH
Q 021709 119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM 197 (308)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~ 197 (308)
....++.++|.+..++.++++++++.+++++|.+++...+||++ +++++|+||.+|+++
T Consensus 156 --------------------~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~ 215 (495)
T PTZ00314 156 --------------------DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKK 215 (495)
T ss_pred --------------------cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhh
Confidence 01345778887334899999999999999999999999999999 889999999999973
No 164
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.22 E-value=3e-10 Score=85.33 Aligned_cols=110 Identities=25% Similarity=0.339 Sum_probs=93.3
Q ss_pred ccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCC
Q 021709 46 VMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSI 125 (308)
Q Consensus 46 im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (308)
.|.++++++.++.++.+|...|.++++..+||++.++++|+++..|+.+.......
T Consensus 4 ~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~~~~~~~------------------------ 59 (117)
T COG0517 4 IMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAGGK------------------------ 59 (117)
T ss_pred cccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhccCC------------------------
Confidence 44478999999999999999999999999999998899999999999876432110
Q ss_pred CChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHH-cCCcEEEEee-CC-EEEEEeeHHHH
Q 021709 126 SGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE-LRLSSAVVTV-EN-KPRGILTSKDI 195 (308)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~V~~-~~-~~~Givt~~dl 195 (308)
...++.++|. .++.++.++.++.++.+.|.+ .+.+.+||++ ++ +++|++|.+|+
T Consensus 60 --------------~~~~v~~v~~--~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di 116 (117)
T COG0517 60 --------------RLLPVKEVMT--KPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116 (117)
T ss_pred --------------ccccHHHhcc--CCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence 0004666776 579999999999999999999 6999999999 54 99999999987
No 165
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.22 E-value=1.1e-10 Score=86.83 Aligned_cols=98 Identities=21% Similarity=0.301 Sum_probs=81.0
Q ss_pred EeCCCcHHHHHHHhHhCC-----CcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709 54 VLSDTLAVEALQKMVQGK-----FRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (308)
Q Consensus 54 v~~~~~l~~a~~~m~~~~-----~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (308)
+.+++++.++++.|.+++ +..+||++ +++++|+++..++++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~------------------------------- 50 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD------------------------------- 50 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC-------------------------------
Confidence 578899999999998777 47889998 58999999998886310
Q ss_pred hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
...++.+++. .++..+.+++++.++++.|.+.+.+.+||++ +++++|++|..|++
T Consensus 51 ------------~~~~v~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll 106 (109)
T cd04606 51 ------------PDTPVSDIMD--TDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVI 106 (109)
T ss_pred ------------CcchHHHHhC--CCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhh
Confidence 0112445554 5689999999999999999999999999998 89999999999996
No 166
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.21 E-value=5e-11 Score=96.86 Aligned_cols=163 Identities=16% Similarity=0.176 Sum_probs=133.0
Q ss_pred CCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee--CCEEEEEeeHHHHHHHHHhcCCCccccccccccccC
Q 021709 141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN 218 (308)
Q Consensus 141 ~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~ 218 (308)
...++++|.++....++..+.++.+.+..+.+...+++||+. .+.+.|++-.+|++ +.+.....++ .++++. ++
T Consensus 66 dl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL-~~~~~~~~~F--~i~~lL-RP 141 (293)
T COG4535 66 DLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLL-PFMRSDAEPF--DIKELL-RP 141 (293)
T ss_pred HhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHH-HHhcCCcccc--cHHHhc-cc
Confidence 445899999989999999999999999999999999999997 67899999999997 5554444332 456665 57
Q ss_pred ceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcCCCCCCCcch-----hhh-------HHH
Q 021709 219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAA-----STM-------MQK 286 (308)
Q Consensus 219 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~~~~~~~~~~-----~~~-------~~~ 286 (308)
...|+++-.+...++-|.....+-..|+|+.|.+-|+||..||++.+++....+....+... ... .-+
T Consensus 142 av~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~ls~~~~~VrALT~Ie 221 (293)
T COG4535 142 AVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQLSRHTWRVRALTEIE 221 (293)
T ss_pred ceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccccccchhhhhhhHhhcCCceEEEecccHH
Confidence 78899999999999999999988899999999999999999999999987776543332211 111 135
Q ss_pred HHHhhccCCCCCchhhhcccc
Q 021709 287 FWDSAMALSPNDDEEDNRRFY 307 (308)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~ 307 (308)
-+|....++-+++|+||.+|-
T Consensus 222 dFNe~F~t~FsDeevDTIGGL 242 (293)
T COG4535 222 DFNEAFGTHFSDEEVDTIGGL 242 (293)
T ss_pred HHHHHhcCCCChhhhhhhhHH
Confidence 678888999999999999874
No 167
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.21 E-value=3.2e-10 Score=85.04 Aligned_cols=103 Identities=16% Similarity=0.252 Sum_probs=83.8
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCC
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSI 125 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~----~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (308)
++.++.+++++.++++.|.+++...+||+|+ |+++|+++..+++...
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~----------------------------- 53 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLT----------------------------- 53 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhh-----------------------------
Confidence 4678899999999999999999999999984 8999999998875210
Q ss_pred CChhHHHHHHHHHhcCCCcccccCCCCceeEeC--CCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 126 SGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS--PTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
....++.++|. ..+..+. +++++.++++.|.+++.+.+||++ +++++|++|.+|++
T Consensus 54 -------------~~~~~v~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~ 112 (114)
T cd04602 54 -------------DSETPLSEVMT--PREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLK 112 (114)
T ss_pred -------------ccCCCHHHhcC--CCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhh
Confidence 01123556665 4455554 499999999999999999999998 78999999999985
No 168
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.20 E-value=9.2e-10 Score=101.62 Aligned_cols=174 Identities=14% Similarity=0.195 Sum_probs=131.4
Q ss_pred EEEEehhHHHHHHHHhccCCccccccccccc--CceEEeCCCcHHHHHHHhHhCCCcEeeEee--CCeEEEEEeHHHHHH
Q 021709 19 CGILTDKDIATRVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLY 94 (308)
Q Consensus 19 ~Giit~~D~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd--~~~~vGivs~~dll~ 94 (308)
.|.+...+- .++.+-.++.+.+++++|.+ +++.++.+.++.++.+.+.+++++++||.+ .+.++|+++.+|++.
T Consensus 186 ~g~~~~~E~--~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~ 263 (429)
T COG1253 186 EGVLEEEER--EMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLR 263 (429)
T ss_pred cCCcCHHHH--HHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHH
Confidence 566776665 67777788899999999985 678999999999999999999999999998 378999999999987
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcC
Q 021709 95 DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELR 174 (308)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 174 (308)
.....-. .......+ .+++.+++++++.++++.|++.+
T Consensus 264 ~~~~~~~---------------------------------------~~~~~~~~---~~~~~Vpet~~~~~lL~~~r~~~ 301 (429)
T COG1253 264 ALLDGQS---------------------------------------DLDLRVLV---RPPLFVPETLSLSDLLEEFREER 301 (429)
T ss_pred HHhcCcc---------------------------------------ccchhhcc---cCCeEecCCCcHHHHHHHHHHhC
Confidence 6332100 00001111 37999999999999999999999
Q ss_pred CcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccc----cccccccccCceeecCCCCHHHHHHHHHh
Q 021709 175 LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS----TLVEKVMTPNPECATIDTPIVDALHIMHD 237 (308)
Q Consensus 175 ~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~----~~v~~~~~~~~~~v~~~~~l~~~~~~~~~ 237 (308)
.+.+.|+| .|...|+||..|++..+..+-.+..+ ..+....... ..++...++.++.+.+.-
T Consensus 302 ~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~~~~~-~~v~G~~~l~e~~~~l~~ 368 (429)
T COG1253 302 THMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDG-WLVDGRVPLEELEELLGI 368 (429)
T ss_pred CeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccccccccceEecCCc-EEEeccccHHHHHHHhCC
Confidence 99999999 89999999999998666643322211 1222222223 567888888888877644
No 169
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.20 E-value=1.2e-10 Score=87.05 Aligned_cols=92 Identities=36% Similarity=0.569 Sum_probs=78.6
Q ss_pred CCCCcCEEEEECCCCcEEEEEehhHHHHHHHHhccCCcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-C
Q 021709 2 AARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N 80 (308)
Q Consensus 2 ~~~~~~~~~V~~~~~~~~Giit~~D~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~ 80 (308)
.+++.+.++|++++++++|+++..++.+ ...........++.++|.+++.++.+++++.++++.|.+++...+||++ +
T Consensus 21 ~~~~~~~~~v~d~~~~~~G~v~~~~i~~-~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~ 99 (114)
T cd04604 21 SRKGLGMTAVVDEDGRLVGIFTDGDLRR-ALEKGLDILTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDN 99 (114)
T ss_pred HhcCccEEEEEcCCCCEEEEechHHHHH-HHhccCccccCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCC
Confidence 3456789999998899999999999984 4444334444579999998999999999999999999999999999998 7
Q ss_pred CeEEEEEeHHHHHH
Q 021709 81 GEVIALLDIAKCLY 94 (308)
Q Consensus 81 ~~~vGivs~~dll~ 94 (308)
++++|+++..++++
T Consensus 100 ~~~iG~it~~di~~ 113 (114)
T cd04604 100 GRPVGVLHIHDLLR 113 (114)
T ss_pred CCEEEEEEHHHhhc
Confidence 99999999999864
No 170
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.20 E-value=4.3e-10 Score=85.06 Aligned_cols=117 Identities=26% Similarity=0.360 Sum_probs=90.0
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
++.+++++.++.+|++.|.+.+.+.+||++ +++++|+++..++.+.........
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~------------------------- 56 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTL------------------------- 56 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccc-------------------------
Confidence 567899999999999999999999999998 599999999999865421110000
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~ 196 (308)
..... ......++.++|. ..+.++.+++++.++++.|.+.+.+.+||+++++++|++|..|++
T Consensus 57 --~~~~~-~~~~~~~v~~~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~~di~ 119 (121)
T cd04584 57 --SEHEL-YLLLKMPVKEIMT--KDVITVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLL 119 (121)
T ss_pred --hhhhh-hhhcCcCHHHHhh--CCCeEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHhh
Confidence 00000 0112234556665 678999999999999999999999999999888999999999985
No 171
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.20 E-value=2.4e-10 Score=88.41 Aligned_cols=98 Identities=30% Similarity=0.297 Sum_probs=78.0
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccc----------ccccccc------
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS----------TLVEKVM------ 215 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~----------~~v~~~~------ 215 (308)
++.++.+++++.++++.|.+.+.+.+||++ +|+++|++|..|+++........... ..+.++|
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 81 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISY 81 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhhh
Confidence 578899999999999999988999999999 79999999999997544332221100 1123344
Q ss_pred ---ccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCC
Q 021709 216 ---TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG 250 (308)
Q Consensus 216 ---~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~ 250 (308)
..++.++.+++++.++++.|.+++.+.+||+|+.+
T Consensus 82 ~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 82 GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV 119 (133)
T ss_pred cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence 45788999999999999999999999999998543
No 172
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.20 E-value=2.3e-10 Score=106.08 Aligned_cols=114 Identities=20% Similarity=0.307 Sum_probs=96.9
Q ss_pred ccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q 021709 42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV 117 (308)
Q Consensus 42 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~----~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~ 117 (308)
.+++.|.+++++++++.++.+++++|.+++++++||+++ ++++|+++.+|++...
T Consensus 81 ~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~--------------------- 139 (450)
T TIGR01302 81 RAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK--------------------- 139 (450)
T ss_pred cccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh---------------------
Confidence 356678889999999999999999999999999999984 5999999999986320
Q ss_pred hhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
....++.++|.+ .++.++++++++.++++.|.+++.+.+||+| +|+++|+||.+|++
T Consensus 140 ---------------------~~~~~V~dvm~~-~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl 197 (450)
T TIGR01302 140 ---------------------DKGKPVSEVMTR-EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIV 197 (450)
T ss_pred ---------------------cCCCCHHHhhCC-CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhh
Confidence 012346667752 3799999999999999999999999999999 89999999999997
Q ss_pred HH
Q 021709 197 MR 198 (308)
Q Consensus 197 ~~ 198 (308)
+.
T Consensus 198 ~~ 199 (450)
T TIGR01302 198 KR 199 (450)
T ss_pred hc
Confidence 44
No 173
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=6.4e-10 Score=82.14 Aligned_cols=102 Identities=26% Similarity=0.353 Sum_probs=84.7
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
++.++.++.++.+++..|.+.+...+||++ +++++|+++..+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~-------------------------------- 49 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNP-------------------------------- 49 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhcc--------------------------------
Confidence 467889999999999999998999999998 58999999999986320
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~ 196 (308)
...++.++|. .++.++.+++++.++++.|.+.+.+.+||+++++++|++|..|++
T Consensus 50 -----------~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~~~~G~it~~d~~ 104 (106)
T cd04638 50 -----------EEEQLALLMT--RDPPTVSPDDDVKEAAKLMVENNIRRVPVVDDGKLVGIVTVADIV 104 (106)
T ss_pred -----------ccchHHHHhc--CCCceECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhh
Confidence 0011333443 568889999999999999999999999999977999999999985
No 174
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.18 E-value=3.3e-10 Score=84.09 Aligned_cols=104 Identities=23% Similarity=0.359 Sum_probs=84.8
Q ss_pred cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (308)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (308)
+++.++.++.++.++++.|.+++...+||++ +|+++|+++..++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~------------------------------- 50 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET------------------------------- 50 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc-------------------------------
Confidence 4678899999999999999999999999998 58999999998875210
Q ss_pred hhHHHHHHHHHhcCCCcccccCCCCceeEeCC-CCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISP-TDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
....++.++|. ..+..+.+ ++++.++++.|.+.+.+.+||++ +++++|++|.+|++
T Consensus 51 -----------~~~~~v~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil 108 (110)
T cd04601 51 -----------DLDKPVSEVMT--PENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIE 108 (110)
T ss_pred -----------cCCCCHHHhcc--cCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhh
Confidence 01123555664 44555566 99999999999999999999998 78999999999986
No 175
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.17 E-value=1.7e-10 Score=100.21 Aligned_cols=111 Identities=16% Similarity=0.198 Sum_probs=93.7
Q ss_pred cccccccccC-ceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhh
Q 021709 41 TPVSKVMTRN-PTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 118 (308)
Q Consensus 41 ~~v~~im~~~-~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (308)
.+++++|.++ +.++.+++++.++++.|.+.+++.+||++ +|+++|+++..|+.+....
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~-------------------- 214 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLG-------------------- 214 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhc--------------------
Confidence 4688999888 99999999999999999999999999998 6899999999998753110
Q ss_pred hccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEee
Q 021709 119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILT 191 (308)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt 191 (308)
......++.++|. +++.++.+++++.++++.|.+.+...+||++ +|+++|+|+
T Consensus 215 ------------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 215 ------------------GGSLKSEVRDFMT--LGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred ------------------CCcccCcHHHhCC--CCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 0011234677776 6788999999999999999999999999998 789999985
No 176
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.16 E-value=1.1e-10 Score=76.16 Aligned_cols=56 Identities=34% Similarity=0.571 Sum_probs=52.6
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266 (308)
Q Consensus 211 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~ 266 (308)
++++|.+++.++++++++.++++.|.+++.+++||+|++|+++|+||..||++++.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 45788999999999999999999999999999999999999999999999998764
No 177
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.15 E-value=1.3e-09 Score=82.16 Aligned_cols=111 Identities=16% Similarity=0.184 Sum_probs=86.3
Q ss_pred CceEEeCCCcHHHHHHHhHhCC-CcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGK-FRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~-~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
++.++++++++.++++.|...+ +..+||+++|+++|+++..++.+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~~~~~~~~---------------------------- 53 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALMELLSTPY---------------------------- 53 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHHHHHhchh----------------------------
Confidence 5668899999999999998876 88999998899999999999875422100
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCc---EEEEee-CCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLS---SAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~V~~-~~~~~Givt~~dl~ 196 (308)
........++.++|. .++.++.+++++.+++..|.+.+.. ..+|++ +|+++|++|..|++
T Consensus 54 ------~~~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~ 117 (119)
T cd04598 54 ------GRALYGKKPVSEVMD--PDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLL 117 (119)
T ss_pred ------hHHHHcCCcHHHhcC--CCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHh
Confidence 001122334677776 6799999999999999999987753 335666 89999999999985
No 178
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.15 E-value=1e-09 Score=81.41 Aligned_cols=106 Identities=24% Similarity=0.314 Sum_probs=83.9
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (308)
++.+++++.++.++.+.|.+++.+.+||+++++++|+++..++.+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~---------------------------- 53 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEGKA---------------------------- 53 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHHhcccc----------------------------
Confidence 4678999999999999999999999999988999999999998764221100
Q ss_pred HHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
....++.++|. .++.++++++++.++.+.|.+ .. .+||++ +++++|++|.+|++
T Consensus 54 ---------~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~ 108 (110)
T cd04609 54 ---------KFSLPVREVMG--EPLPTVDPDAPIEELSELLDR-GN-VAVVVDEGGKFVGIITRADLL 108 (110)
T ss_pred ---------ccCcCHHHHhc--CCCceeCCCCcHHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHHhh
Confidence 00123455564 568889999999999999988 33 367777 79999999999985
No 179
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.14 E-value=5.8e-10 Score=104.17 Aligned_cols=144 Identities=22% Similarity=0.248 Sum_probs=105.9
Q ss_pred CCCCcEEEEEehhHHHHHH--HHh-----ccCCcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEE
Q 021709 13 DSNALLCGILTDKDIATRV--IAR-----ELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVI 84 (308)
Q Consensus 13 ~~~~~~~Giit~~D~~~~~--~~~-----~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~v 84 (308)
|...++..-+-..++++.. ..+ ..-+.+.+++++|.+++.++.+++++.++++.|.++++..+||++ +++++
T Consensus 300 d~g~~y~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~ 379 (454)
T TIGR01137 300 DSIRNYMTKFLNDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVL 379 (454)
T ss_pred CCCccccCcccChHHHHhcCCcccccccHHHHhccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEE
Confidence 3344565555445655432 111 112556789999999999999999999999999999999999998 58999
Q ss_pred EEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHH
Q 021709 85 ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVL 164 (308)
Q Consensus 85 Givs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~ 164 (308)
|+++..++++...... .....++.++|. .++.++++++++.
T Consensus 380 Givt~~dl~~~~~~~~-------------------------------------~~~~~~v~~im~--~~~~~v~~~~~l~ 420 (454)
T TIGR01137 380 GSVTLRELLSALFAGK-------------------------------------ANPDDAVSKVMS--KKFIQIGEGEKLS 420 (454)
T ss_pred EEEEHHHHHHHHhccC-------------------------------------CCcCCCHHHhcC--CCCeEECCcCcHH
Confidence 9999999876422100 011224667776 6788999999999
Q ss_pred HHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHH
Q 021709 165 MATKKMLELRLSSAVVTVENKPRGILTSKDILM 197 (308)
Q Consensus 165 ~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~ 197 (308)
++++.|.+++ ..+|+++++++|+||.+|++.
T Consensus 421 ~a~~~~~~~~--~~vV~~~g~liGvvt~~dll~ 451 (454)
T TIGR01137 421 DLSKFLEKNS--SAIVTEEGKPIGVVTKIDLLS 451 (454)
T ss_pred HHHHHHHHCC--eeEEEECCEEEEEEEHHHHHH
Confidence 9999998753 345555899999999999973
No 180
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.14 E-value=1.1e-10 Score=102.08 Aligned_cols=108 Identities=31% Similarity=0.366 Sum_probs=97.3
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCcEEEEee----CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCC
Q 021709 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV----ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTP 227 (308)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~----~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~ 227 (308)
.+++.++|+.++.++++....+++..+|+++ +++++|+||.+|+ ..+ .....+++++|.+.+.+.++..+
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi-~f~-----~~~~~~~~~vmt~~~~~~~~gi~ 189 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDI-QFL-----EDNSLLVSDVMTKNPVTGAQGIT 189 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhh-hhh-----hcccchhhhhccccccccccccc
Confidence 5789999999999999999999999999996 5689999999999 344 22256889999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709 228 IVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265 (308)
Q Consensus 228 l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~ 265 (308)
+.++-+++.+++...+||||++|.++.+|+++|+.+..
T Consensus 190 l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 190 LKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR 227 (503)
T ss_pred HHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence 99999999999999999999999999999999999743
No 181
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.10 E-value=4.7e-09 Score=94.72 Aligned_cols=196 Identities=20% Similarity=0.242 Sum_probs=141.6
Q ss_pred cCceEEeCCCcHHHHHHHhHhCCCcEeeEee--CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCC
Q 021709 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 126 (308)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd--~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (308)
...+.++...++.+|+..+..++.+..|+++ ...++|+++..|++...........
T Consensus 76 ~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~---------------------- 133 (381)
T KOG1764|consen 76 SKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKS---------------------- 133 (381)
T ss_pred ceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCC----------------------
Confidence 4678899999999999999999999999998 4889999999999877654433200
Q ss_pred ChhHHHHHHHHHh-cCCCcccc--cCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee--CCEEEEEeeHHHHHHHHHh
Q 021709 127 GPNTFIETLRERM-FRPSLSTI--IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVIS 201 (308)
Q Consensus 127 ~~~~~~~~~~~~~-~~~~v~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~ 201 (308)
........-.... ....+..+ ....+++..+.+..++.++...+.+.+++++||.| .+.+..++|.+-++..+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~ 213 (381)
T KOG1764|consen 134 SLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWL 213 (381)
T ss_pred cHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHH
Confidence 0000000000001 11111000 00113449999999999999999999999999998 6799999999999744443
Q ss_pred cCCCc-----ccccccccc---ccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709 202 QNLPA-----DSTLVEKVM---TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266 (308)
Q Consensus 202 ~~~~~-----~~~~v~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~ 266 (308)
..... ...+++++- -.+...+..++++.+|+++|...+++.+||||++|+.+|+++..|+.....
T Consensus 214 ~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~ 286 (381)
T KOG1764|consen 214 NGRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAR 286 (381)
T ss_pred hhcccccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhh
Confidence 32222 112222221 136788999999999999999999999999999999999999999997554
No 182
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.09 E-value=3.5e-09 Score=78.32 Aligned_cols=108 Identities=27% Similarity=0.339 Sum_probs=87.0
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEeeC-CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
++.+++++.++.++++.|.+++...+||+++ ++++|+++..++..........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~-------------------------- 55 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLD-------------------------- 55 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCC--------------------------
Confidence 5678899999999999999999999999984 8999999999997653211000
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
....+.+++. .++..+.++.++.++++.|.+.+.+.+||++ +++++|+++..|++
T Consensus 56 -----------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~ 111 (113)
T cd02205 56 -----------PLVTVGDVMT--RDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDIL 111 (113)
T ss_pred -----------ccccHHHHhc--CCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhh
Confidence 0000233444 5788899999999999999999999999998 79999999999985
No 183
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.06 E-value=3.6e-09 Score=91.96 Aligned_cols=164 Identities=15% Similarity=0.146 Sum_probs=126.0
Q ss_pred hccCCcccccccccc--cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC--CeEEEEEeHHHHHHHHHHHHHHHHHhHHH
Q 021709 34 RELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKA 109 (308)
Q Consensus 34 ~~~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~--~~~vGivs~~dll~~~~~~~~~~~~~~~~ 109 (308)
.-.++++.+|+|+|. .++..++.+++..+.++-+....+.++|++++ +.++|++..+++++.+.+.-.-.
T Consensus 193 gvLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~------ 266 (423)
T COG4536 193 GVLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFT------ 266 (423)
T ss_pred cccccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCccc------
Confidence 445788999999997 47889999999999999999999999999974 67999999999998765421100
Q ss_pred HHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEE
Q 021709 110 IAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRG 188 (308)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~G 188 (308)
..+ +..+. .++..+++++++.+-+..|.+++-+...|+| .|.+.|
T Consensus 267 ------------------k~d-------------~~~~a---~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~G 312 (423)
T COG4536 267 ------------------KED-------------ILRAA---DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQG 312 (423)
T ss_pred ------------------HhH-------------HHHHh---cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEe
Confidence 000 11111 5799999999999999999999999999999 899999
Q ss_pred EeeHHHHHHHHHhcCCCccccccccccc--cCceeecCCCCHHHHHHHHHh
Q 021709 189 ILTSKDILMRVISQNLPADSTLVEKVMT--PNPECATIDTPIVDALHIMHD 237 (308)
Q Consensus 189 ivt~~dl~~~~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~ 237 (308)
+||..|++..+.....+......+++.. ..-+.++.+.++.+.-+.|.-
T Consensus 313 LVTLEDIlEEIVGdftde~d~~~~ev~~q~dgs~iidGs~~iRdlNr~l~W 363 (423)
T COG4536 313 LVTLEDILEEIVGDFTDEHDTLAKEVIPQSDGSFIIDGSANVRDLNRALDW 363 (423)
T ss_pred eeeHHHHHHHHhccccccCcccchhhcccCCCcEEEeCCCcHHHHHHhcCC
Confidence 9999999988876544333333333332 244667888888888877754
No 184
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.05 E-value=1.5e-08 Score=91.27 Aligned_cols=107 Identities=19% Similarity=0.197 Sum_probs=90.8
Q ss_pred eeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (308)
Q Consensus 154 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 232 (308)
.....++.+..++++.|...+...++|++ ++++.|.++..++. ...... ..+.+.+.....++++++++.+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 325 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIK-QARKKA-----QGLQDVLIDDIYTVDAGTLLRETV 325 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHH-HHhhcC-----CchhhhhccCCceECCCCcHHHHH
Confidence 34566777899999999998998999998 89999999999984 444322 245666777888999999999999
Q ss_pred HHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709 233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (308)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~ 267 (308)
..|..++.. +||+|++|+++|+||..++++++..
T Consensus 326 ~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 326 RKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred HHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 999999998 9999999999999999999987754
No 185
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.90 E-value=1.7e-08 Score=78.08 Aligned_cols=114 Identities=15% Similarity=0.008 Sum_probs=76.6
Q ss_pred CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (308)
Q Consensus 50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (308)
++.++.+++++.+|++.|.++++..+||+| +|+++|+++..|+++.............. ..++
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~----------~~~~------ 65 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPED----------ETKQ------ 65 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccch----------hhcc------
Confidence 578999999999999999999999999998 58999999999998754321000000000 0000
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee
Q 021709 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV 182 (308)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~ 182 (308)
.........+....+.+.|. .+++++.+++++.++++.|.+++++++||++
T Consensus 66 -~~~~~v~~i~~~~~~~~~~~--~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd 116 (133)
T cd04592 66 -TNTCLVSSVCTKGISYGGQE--CGLWTCTPDTDLTTAKKLMEAKGVKQLPVVK 116 (133)
T ss_pred -cccccHHHHhhhhhhhcccC--CCCEEECCCCCHHHHHHHHHHcCCCcCCEec
Confidence 00000011111111222233 5688999999999999999999999999998
No 186
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.89 E-value=6.5e-09 Score=67.69 Aligned_cols=54 Identities=30% Similarity=0.453 Sum_probs=50.4
Q ss_pred cccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHH
Q 021709 43 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDA 96 (308)
Q Consensus 43 v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~ 96 (308)
++++|.++++++++++++.++++.|.+++++.+||++ +|+++|+++.+|+++..
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 4688999999999999999999999999999999996 79999999999998764
No 187
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=9.7e-08 Score=87.01 Aligned_cols=104 Identities=18% Similarity=0.191 Sum_probs=88.5
Q ss_pred eCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHHHHH
Q 021709 157 ISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIM 235 (308)
Q Consensus 157 v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~ 235 (308)
..++.+..+++..|...+.+.++|++ ++++.|+++..++. +..... .++...+.....++..++++.+++..+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLK-TALTQQ-----QGLDAALIDAPLAVDAQTPLSELLSHV 363 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHH-hhhhcC-----CchhhhhccCCceeCCCCCHHHHHHHH
Confidence 44667889999999999999999999 89999999999994 443321 245666677888999999999999999
Q ss_pred HhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709 236 HDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (308)
Q Consensus 236 ~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~ 267 (308)
..+... +||+|++|+++|+||..++++++..
T Consensus 364 ~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 364 GQAPCA-VPVVDEDQQYVGIISKGMLLRALDR 394 (400)
T ss_pred HhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 998876 9999999999999999999987753
No 188
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.82 E-value=3.1e-08 Score=90.62 Aligned_cols=121 Identities=21% Similarity=0.277 Sum_probs=101.2
Q ss_pred hccCCcccccccccccCceEEeCCCcHHHHHHHhHh-----CCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhH
Q 021709 34 RELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQ-----GKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKG 107 (308)
Q Consensus 34 ~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~-----~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~ 107 (308)
.......-+++.+|...++++.++.|+.+++.++.+ ..++.+.|+| +++++|+++.++++.+
T Consensus 125 ~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a------------ 192 (451)
T COG2239 125 QLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA------------ 192 (451)
T ss_pred HhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC------------
Confidence 344556668999999999999999999999999984 3467788898 6889999999999743
Q ss_pred HHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEE
Q 021709 108 KAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKP 186 (308)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~ 186 (308)
. ...++.++|. +.++++.+++.-+++.+.+.+++.-++||+| ++++
T Consensus 193 -------------------~------------~~~~i~~im~--~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~L 239 (451)
T COG2239 193 -------------------E------------PDELLKDLME--DDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRL 239 (451)
T ss_pred -------------------C------------cHhHHHHHhc--ccceeecccCCHHHHHHHHHHhCCeecceECCCCce
Confidence 0 1122566776 5699999999999999999999999999999 8999
Q ss_pred EEEeeHHHHHHHH
Q 021709 187 RGILTSKDILMRV 199 (308)
Q Consensus 187 ~Givt~~dl~~~~ 199 (308)
+|++|..|++.-+
T Consensus 240 iG~itiDDiidvi 252 (451)
T COG2239 240 IGIITIDDIIDVI 252 (451)
T ss_pred eeeeeHHHHHHHH
Confidence 9999999997433
No 189
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.58 E-value=1.2e-07 Score=87.45 Aligned_cols=124 Identities=13% Similarity=0.206 Sum_probs=103.8
Q ss_pred hcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee---C---CEEEEEeeHHHHHHHHHhcCCCc------
Q 021709 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---E---NKPRGILTSKDILMRVISQNLPA------ 206 (308)
Q Consensus 139 ~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~---~~~~Givt~~dl~~~~~~~~~~~------ 206 (308)
+....+.++|. .+++++...+.+..+.+.+.++.++.+||+| . +++.|+|=+.+++ .++.+....
T Consensus 579 mr~L~a~ev~~--~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~-vlL~~~~f~~~~~~~ 655 (762)
T KOG0474|consen 579 MRNLTAGEVMS--KPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLL-VLLKKRVFVEESRST 655 (762)
T ss_pred hhhhhHhhhcc--CCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHH-HHHHhhhhhccCccc
Confidence 44455788887 7999999999999999999999999999998 2 4789999999996 554331100
Q ss_pred --------------------------------cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEE
Q 021709 207 --------------------------------DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVD 254 (308)
Q Consensus 207 --------------------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iG 254 (308)
...++..+|++.|.+|++++++..++.+|.+-+.+++.||+..++.+|
T Consensus 656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~g 735 (762)
T KOG0474|consen 656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVG 735 (762)
T ss_pred cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeE
Confidence 014667788999999999999999999999999999999999999999
Q ss_pred EEEhhHHHHHH
Q 021709 255 VVDVIHITHAA 265 (308)
Q Consensus 255 iit~~di~~~~ 265 (308)
++|++|+.++-
T Consensus 736 ilTR~D~~~~~ 746 (762)
T KOG0474|consen 736 ILTRKDLARYR 746 (762)
T ss_pred EEehhhhhhHH
Confidence 99999999643
No 190
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.56 E-value=4.3e-06 Score=75.37 Aligned_cols=148 Identities=16% Similarity=0.218 Sum_probs=104.2
Q ss_pred cCEEEEECCCCcEEEEEehhHHHHH--------HHHhccCCcccccccc---cccCceEEeCCCcHHHHHHHhHhCCCcE
Q 021709 6 VDALLLTDSNALLCGILTDKDIATR--------VIARELNLEETPVSKV---MTRNPTFVLSDTLAVEALQKMVQGKFRH 74 (308)
Q Consensus 6 ~~~~~V~~~~~~~~Giit~~D~~~~--------~~~~~~~~~~~~v~~i---m~~~~~~v~~~~~l~~a~~~m~~~~~~~ 74 (308)
++.+.+++ +|+++..-+..+++.. +.............++ +........++.+..+++..|...+...
T Consensus 197 ~drI~vl~-~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (363)
T TIGR01186 197 GDRIVIMK-AGEIVQVGTPDEILRNPANEYVEEFIGKVDLSQVFDAERIAQRMNTGPITKTADKGPRSALQLMRDERVDS 275 (363)
T ss_pred CCEEEEEe-CCEEEeeCCHHHHHhCcccHHHHHHhhccchhcccchhhHhhhccccceeecCCCCHHHHHHHHHhcCCce
Confidence 45666775 6889888888887642 1111100111122222 3333345666778999999999999999
Q ss_pred eeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCc
Q 021709 75 LPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSK 153 (308)
Q Consensus 75 ~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 153 (308)
+.|++ ++++.|.++..++..+.-. ...+.+.+. ..
T Consensus 276 ~~~~~~~~~~~g~~~~~~~~~~~~~------------------------------------------~~~~~~~~~--~~ 311 (363)
T TIGR01186 276 LYVVDRQNKLVGVVDVESIKQARKK------------------------------------------AQGLQDVLI--DD 311 (363)
T ss_pred EEEEcCCCCEEEEEeHHHHHHHhhc------------------------------------------CCchhhhhc--cC
Confidence 99998 6899999998887543110 111333343 56
Q ss_pred eeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHH
Q 021709 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV 199 (308)
Q Consensus 154 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~ 199 (308)
..++++++++.+++..+.+++.. +||++ +|+++|+||..+++..+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~ 357 (363)
T TIGR01186 312 IYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDAL 357 (363)
T ss_pred CceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHH
Confidence 78899999999999999999998 99999 89999999999997444
No 191
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=6.1e-06 Score=75.37 Aligned_cols=148 Identities=11% Similarity=0.101 Sum_probs=103.8
Q ss_pred cCEEEEECCCCcEEEEEehhHHHHH--------HHHhccCCcc-cccccccccCc---eEEeCCCcHHHHHHHhHhCCCc
Q 021709 6 VDALLLTDSNALLCGILTDKDIATR--------VIARELNLEE-TPVSKVMTRNP---TFVLSDTLAVEALQKMVQGKFR 73 (308)
Q Consensus 6 ~~~~~V~~~~~~~~Giit~~D~~~~--------~~~~~~~~~~-~~v~~im~~~~---~~v~~~~~l~~a~~~m~~~~~~ 73 (308)
++.+.+++ +|+++..-+..++... ++.. .+... .++.++|.+.. +...++.+..+++..|...+..
T Consensus 232 ~Dri~vL~-~G~i~~~g~~~~l~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (400)
T PRK10070 232 GDRIAIMQ-NGEVVQVGTPDEILNNPANDYVRTFFRG-VDISQVFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDRE 309 (400)
T ss_pred CCEEEEEE-CCEEEecCCHHHHHhCcccHHHHHHHhc-cccccccchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCc
Confidence 45666666 5777766666666531 1111 11111 35666775432 2334667889999999999999
Q ss_pred EeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCC
Q 021709 74 HLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKS 152 (308)
Q Consensus 74 ~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 152 (308)
.+.|+| ++++.|+++..++.+..- ....+.+.+. .
T Consensus 310 ~~~~~~~~~~~~g~~~~~~~~~~~~------------------------------------------~~~~~~~~~~--~ 345 (400)
T PRK10070 310 YGYVIERGNKFVGAVSIDSLKTALT------------------------------------------QQQGLDAALI--D 345 (400)
T ss_pred eEEEEcCCCcEEEEEeHHHHHhhhh------------------------------------------cCCchhhhhc--c
Confidence 999998 699999999999864311 0011333333 5
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHH
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI 200 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~ 200 (308)
...++.+++++.+++..+.+.... +||++ +|+++|+||..+++..+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 346 APLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALD 393 (400)
T ss_pred CCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 678999999999999999987766 99999 899999999999974443
No 192
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.49 E-value=1.3e-06 Score=75.11 Aligned_cols=166 Identities=17% Similarity=0.262 Sum_probs=115.8
Q ss_pred ccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709 48 TRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (308)
Q Consensus 48 ~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (308)
.+.+++++.+ +.||+++ -+++.+.++|+++.+-+..+++.+ +
T Consensus 215 ~KTIvFitHD--LdEAlri-----G~rIaimkdG~ivQ~Gtp~eIl~~-------------------------------P 256 (386)
T COG4175 215 KKTIVFITHD--LDEALRI-----GDRIAIMKDGEIVQVGTPEEILLN-------------------------------P 256 (386)
T ss_pred CCeEEEEecC--HHHHHhc-----cceEEEecCCeEEEeCCHHHHHcC-------------------------------c
Confidence 4667777666 7788777 467889999999999999999854 1
Q ss_pred hhHHHHHHHHHhcC---CCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcC
Q 021709 128 PNTFIETLRERMFR---PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN 203 (308)
Q Consensus 128 ~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~ 203 (308)
.+++...+-..... .+..++|.+......-.+...-..+.+.+.+.....+.+++ +++.+|+++..+....
T Consensus 257 AndYV~~Fv~~v~~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~----- 331 (386)
T COG4175 257 ANDYVRDFVRNVDRSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA----- 331 (386)
T ss_pred cHHHHHHHHhcCChhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc-----
Confidence 22333333222222 23466776311222222223345677777777766677777 7779999999888511
Q ss_pred CCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709 204 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (308)
Q Consensus 204 ~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~ 267 (308)
.+...+.++..++++.+.+..+.+.+. .++|+|++|+++|+|+...++.++..
T Consensus 332 ----------~~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 ----------ALIDDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred ----------cccccccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHhc
Confidence 345677888899999999988888765 67899999999999999999987653
No 193
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.47 E-value=2.8e-07 Score=85.11 Aligned_cols=154 Identities=17% Similarity=0.143 Sum_probs=102.9
Q ss_pred ccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC------CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHH
Q 021709 40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN------GEVIALLDIAKCLYDAIARMERAAEKGKAIAAA 113 (308)
Q Consensus 40 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~------~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~ 113 (308)
+..++++|.+++++++.-+.+....+.+..+.++.+||+|+ +++.|++-++.++..+..+..... .......+
T Consensus 581 ~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~-~~~~~~~~ 659 (762)
T KOG0474|consen 581 NLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEE-SRSTFDLP 659 (762)
T ss_pred hhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhcc-CccccCcc
Confidence 45789999999999999999999999999999999999973 468898888887655443321110 00000000
Q ss_pred hh-hh-hhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEe
Q 021709 114 VE-GV-EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGIL 190 (308)
Q Consensus 114 ~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Giv 190 (308)
.. .. ..........-++......+.---..+..+|. +.+.++++++++..++.+|+..+.+++.|+. .++.+|++
T Consensus 660 ~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n--~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gil 737 (762)
T KOG0474|consen 660 VRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMN--PSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGIL 737 (762)
T ss_pred hhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccC--CCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEE
Confidence 00 00 00000011111111111111111223667776 7899999999999999999999999999998 77789999
Q ss_pred eHHHHH
Q 021709 191 TSKDIL 196 (308)
Q Consensus 191 t~~dl~ 196 (308)
|++|+.
T Consensus 738 TR~D~~ 743 (762)
T KOG0474|consen 738 TRKDLA 743 (762)
T ss_pred ehhhhh
Confidence 999996
No 194
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.45 E-value=2.7e-07 Score=75.48 Aligned_cols=160 Identities=14% Similarity=0.128 Sum_probs=117.0
Q ss_pred hccCCccccccccccc--CceEEeCCCcHHHHHHHhHhCCCcEeeEee--CCeEEEEEeHHHHHHHHHHHHHHHHHhHHH
Q 021709 34 RELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKA 109 (308)
Q Consensus 34 ~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd--~~~~vGivs~~dll~~~~~~~~~~~~~~~~ 109 (308)
...+.++..+.|+|.+ ..++++.+.++.+.+..+.+...+++||+. .+.+.|++...|+++.+...-
T Consensus 60 Gvm~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~--------- 130 (293)
T COG4535 60 GVMDIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDA--------- 130 (293)
T ss_pred HHHHHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCc---------
Confidence 3345677889999974 578999999999999999999999999996 367999999999987633110
Q ss_pred HHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEE
Q 021709 110 IAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRG 188 (308)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~G 188 (308)
....+.++. ++.+.++++..+...++-|..++.+.++|+| -|.+.|
T Consensus 131 ------------------------------~~F~i~~lL---RPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsG 177 (293)
T COG4535 131 ------------------------------EPFDIKELL---RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSG 177 (293)
T ss_pred ------------------------------ccccHHHhc---ccceecccchhHHHHHHHHHhhcCceEEEEeccCCeee
Confidence 001133333 5688999999999999999999999999999 888999
Q ss_pred EeeHHHHHHHHHhcCCCcc----ccccccccccCceeecCCCCHHHHHHHHH
Q 021709 189 ILTSKDILMRVISQNLPAD----STLVEKVMTPNPECATIDTPIVDALHIMH 236 (308)
Q Consensus 189 ivt~~dl~~~~~~~~~~~~----~~~v~~~~~~~~~~v~~~~~l~~~~~~~~ 236 (308)
+||-.|++..+...-.+.. ...+..+ .+....|..=+++++--+.|-
T Consensus 178 LVTIEDiLEqIVGdIEDE~Deee~~dI~~l-s~~~~~VrALT~IedFNe~F~ 228 (293)
T COG4535 178 LVTIEDILEQIVGDIEDEYDEEEDADIRQL-SRHTWRVRALTEIEDFNEAFG 228 (293)
T ss_pred eEEHHHHHHHHhcccccccchhhhhhhHhh-cCCceEEEecccHHHHHHHhc
Confidence 9999999977664322211 1112222 235555666666666555543
No 195
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.31 E-value=1.4e-06 Score=65.19 Aligned_cols=55 Identities=29% Similarity=0.579 Sum_probs=50.9
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263 (308)
Q Consensus 209 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~ 263 (308)
.++.++|.+++.++..++++.++++.|...+.+.+||+|++|+++|+||..||.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 4688899889999999999999999999999999999999999999999999864
No 196
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.17 E-value=2.3e-05 Score=72.80 Aligned_cols=112 Identities=11% Similarity=0.202 Sum_probs=89.0
Q ss_pred ceeEeCCC-CcHHHHHHHHHHcCCcEEEEee---CCEEEEEeeHHHHHHHHHhcC-CC---------------------c
Q 021709 153 KVVTISPT-DTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQN-LP---------------------A 206 (308)
Q Consensus 153 ~~~~v~~~-~~~~~~~~~~~~~~~~~~~V~~---~~~~~Givt~~dl~~~~~~~~-~~---------------------~ 206 (308)
...++..+ +++.+....|.+..++.+||+- .++++|++.++|+...+.... .+ +
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~ 636 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIP 636 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCC
Confidence 34555554 8999999999999998888863 678999999999975555221 10 1
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709 207 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265 (308)
Q Consensus 207 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~ 265 (308)
.....+++|+..|.++...++++.++.++.+.+.+...|. ++|++.|+||++|+++..
T Consensus 637 ~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 637 SRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHT 694 (696)
T ss_pred CCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhh
Confidence 1234567888899999999999999999999999888665 689999999999999753
No 197
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.12 E-value=8.2e-06 Score=72.04 Aligned_cols=104 Identities=15% Similarity=0.200 Sum_probs=89.5
Q ss_pred cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCC
Q 021709 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTS 124 (308)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~----~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (308)
.+++++.|..++.++++....+++..+||.++ +|++|+|+.+|+-..
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~----------------------------- 166 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL----------------------------- 166 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-----------------------------
Confidence 46789999999999999999999999999974 689999999997421
Q ss_pred CCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 125 ISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
.-....+.++|+ ++.++.+.+.++.++-+++.+.+-..+||++ +|+++.+++++|+.
T Consensus 167 -------------~~~~~~~~~vmt--~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~ 224 (503)
T KOG2550|consen 167 -------------EDNSLLVSDVMT--KNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLM 224 (503)
T ss_pred -------------hcccchhhhhcc--cccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhh
Confidence 012234778887 5669999999999999999999999999999 99999999999995
No 198
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.06 E-value=1.6e-05 Score=48.74 Aligned_cols=46 Identities=30% Similarity=0.472 Sum_probs=41.8
Q ss_pred ceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHH
Q 021709 219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (308)
Q Consensus 219 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~ 264 (308)
+.++.+++++.++.+.|...+.+.+||++++++++|+++..++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence 5678889999999999999999999999988999999999999864
No 199
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.99 E-value=1.4e-05 Score=59.78 Aligned_cols=53 Identities=26% Similarity=0.412 Sum_probs=49.4
Q ss_pred cccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHH
Q 021709 41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCL 93 (308)
Q Consensus 41 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll 93 (308)
.+++++|.+++.++++++++.++++.|.+++...+||++ +|+++|+++..++.
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhh
Confidence 579999999999999999999999999999999999998 68999999999875
No 200
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.85 E-value=8.2e-05 Score=69.31 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=89.3
Q ss_pred ceEEeC-CCcHHHHHHHhHhCCCcEeeEe-e--CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCC
Q 021709 51 PTFVLS-DTLAVEALQKMVQGKFRHLPVV-E--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 126 (308)
Q Consensus 51 ~~~v~~-~~~l~~a~~~m~~~~~~~~pVv-d--~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (308)
..++.. ++++.+...+|.+..++.+||+ + .+.++|++..+++..........+..... ... ...
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~----------~~~--~f~ 625 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVT----------TSI--YFN 625 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhcccccccee----------ccc--ccC
Confidence 444444 5899999999999999999998 3 47899999999987654422111110000 000 000
Q ss_pred ChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709 127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (308)
Q Consensus 127 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~ 196 (308)
.+.. ......-.....+++|. ..+.++...++++.+.+++.+.+.+...|.++|++.|+||++|++
T Consensus 626 ~~~~--~~~~~~~~~~~lk~il~--~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~G~l~Giitkkd~l 691 (696)
T KOG0475|consen 626 DPSP--SAVAGIPSRLDLKDILD--MTPFTVTDLTPMETVVDLFRKLGLRQILVTKNGILLGIITKKDCL 691 (696)
T ss_pred CCCc--cccCCCCCCcCceeecc--CCcccccccCcHHHHHHHHHhhCceEEEEccCCeeEeeeehHHHH
Confidence 0000 00001112233567776 678999999999999999999999999999999999999999997
No 201
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.68 E-value=0.00077 Score=61.30 Aligned_cols=83 Identities=22% Similarity=0.188 Sum_probs=63.3
Q ss_pred cCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcE
Q 021709 173 LRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV 252 (308)
Q Consensus 173 ~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~ 252 (308)
.+.+.++|++. |+++..+.. .+..... ...+.+ +..+..++++++++.+++..+..++. .++|+|+ |++
T Consensus 298 ~~~~~~~~~~~----~~~~~~~~~-~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~ 366 (382)
T TIGR03415 298 RRDTWLFTIDK----QVRRRDAKL-PVQAWAA---EQEVES-LEAAPTVINPDTLMRDVLAARHRTGG-AILLVEN-GRI 366 (382)
T ss_pred cccceeEeecc----ceecccchH-hHhhccc---ccchhh-hcccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeE
Confidence 67788888876 788877763 4332111 123555 55678899999999999999988776 4788885 999
Q ss_pred EEEEEhhHHHHHHH
Q 021709 253 VDVVDVIHITHAAV 266 (308)
Q Consensus 253 iGiit~~di~~~~~ 266 (308)
+|+|+..+++.++.
T Consensus 367 ~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 367 VGVIGDDNIYHALL 380 (382)
T ss_pred EEEEeHHHHHHHHh
Confidence 99999999998764
No 202
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.50 E-value=0.00044 Score=42.06 Aligned_cols=43 Identities=35% Similarity=0.423 Sum_probs=39.4
Q ss_pred eeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (308)
Q Consensus 154 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~ 196 (308)
+.++.+++++.++.+.|.+.+.+.+||++ +++++|+++..+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~ 45 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDII 45 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHH
Confidence 56788999999999999999999999998 68999999999995
No 203
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.25 E-value=0.0054 Score=55.82 Aligned_cols=140 Identities=9% Similarity=0.028 Sum_probs=86.0
Q ss_pred cCEEEEECCCCcEEEEEehhHHHHH----HH---HhccCCc-ccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeE
Q 021709 6 VDALLLTDSNALLCGILTDKDIATR----VI---ARELNLE-ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPV 77 (308)
Q Consensus 6 ~~~~~V~~~~~~~~Giit~~D~~~~----~~---~~~~~~~-~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV 77 (308)
++.+.+++ +|+++..-+..+++.. +. ....+.. -.+++++|.+.......+.+ .+++. ++...+.|
T Consensus 232 ~DrI~vl~-~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~l~a~~~m~~~~~~~~~~~~--~~~~~---~~~~~~~~ 305 (382)
T TIGR03415 232 GNRIAIME-GGRIIQHGTPEEIVLNPANDYVADFVAHTNPLNVLTARSLMRPLTDLEHVDGG--WCVSD---RRDTWLFT 305 (382)
T ss_pred CCEEEEEE-CCEEEEecCHHHHhhCcchHHHHHHhcccCcccceeHHHHhcccccccccCcc--hhhhh---cccceeEe
Confidence 45666675 5788888788777521 11 1222222 24678888433333333333 44333 77888888
Q ss_pred eeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEe
Q 021709 78 VENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTI 157 (308)
Q Consensus 78 vd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v 157 (308)
+++ |+++..+.... ... .....+.+ +. ....++
T Consensus 306 ~~~----~~~~~~~~~~~-~~~---------------------------------------~~~~~~~~-~~--~~~~~~ 338 (382)
T TIGR03415 306 IDK----QVRRRDAKLPV-QAW---------------------------------------AAEQEVES-LE--AAPTVI 338 (382)
T ss_pred ecc----ceecccchHhH-hhc---------------------------------------ccccchhh-hc--ccCccc
Confidence 887 67765554321 000 00111222 22 467889
Q ss_pred CCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHH
Q 021709 158 SPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRV 199 (308)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~ 199 (308)
++++++.+++..+.+.+.. ++|+++|+++|+|+..+++..+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 339 NPDTLMRDVLAARHRTGGA-ILLVENGRIVGVIGDDNIYHAL 379 (382)
T ss_pred CCCCcHHHHHHHHhcCCCC-eEEeeCCeEEEEEeHHHHHHHH
Confidence 9999999999988887765 6777789999999999997433
No 204
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.011 Score=56.81 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=51.6
Q ss_pred CCcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC---CeEEEEEeHHHHHHHHH
Q 021709 37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN---GEVIALLDIAKCLYDAI 97 (308)
Q Consensus 37 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~~~vGivs~~dll~~~~ 97 (308)
....+.|+++|.+++..+..+.+..|.-+.+..+.++.+|++|+ -.++|.|.++.+...+-
T Consensus 584 ~~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~ 647 (931)
T KOG0476|consen 584 SVHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQ 647 (931)
T ss_pred ceeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHH
Confidence 34456789999999999999999999988888777999999973 46899999998876544
No 205
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.79 E-value=0.0083 Score=52.25 Aligned_cols=140 Identities=10% Similarity=0.095 Sum_probs=95.9
Q ss_pred cCEEEEECCCCcEEEEEehhHHHH--------HHHHhccCCccccccccccc--CceEEeCCCcHHHHHHHhHhCCCcEe
Q 021709 6 VDALLLTDSNALLCGILTDKDIAT--------RVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHL 75 (308)
Q Consensus 6 ~~~~~V~~~~~~~~Giit~~D~~~--------~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~~ 75 (308)
++.-+-+-++|+++.+=|..+|+. .+..+.....-.+.+++|.. ..+.-.+...-..++.++.+.+...+
T Consensus 231 iG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 310 (386)
T COG4175 231 IGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVRNVDRSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYG 310 (386)
T ss_pred ccceEEEecCCeEEEeCCHHHHHcCccHHHHHHHHhcCChhheeeHHHhhcccccccccccccccchhhhhhhhccchhh
Confidence 333344445899999999998874 22222222222467888873 22233334445577888888777666
Q ss_pred eEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCce
Q 021709 76 PVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKV 154 (308)
Q Consensus 76 pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 154 (308)
.+++ +++.+|+++..+.... .+. +.+
T Consensus 311 ~~~~~~~~~~g~v~~~~~~~~---------------------------------------------------~~~--~~~ 337 (386)
T COG4175 311 YAVDRGNKFVGVVSIDSLVKA---------------------------------------------------ALI--DDV 337 (386)
T ss_pred HHHhccCceeeEEeccchhcc---------------------------------------------------ccc--ccc
Confidence 6665 6789999998776422 111 578
Q ss_pred eEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHH
Q 021709 155 VTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI 200 (308)
Q Consensus 155 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~ 200 (308)
.++++++++.+.+....+... .++|++ +++++|+++...++ .++
T Consensus 338 ~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl-~aL 382 (386)
T COG4175 338 LTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELL-EAL 382 (386)
T ss_pred cccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHH-HHH
Confidence 889999999999998888666 456777 99999999999997 444
No 206
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.61 E-value=0.016 Score=49.00 Aligned_cols=105 Identities=19% Similarity=0.100 Sum_probs=66.5
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH--------HHHHhcCCCc----cccccccccccCc-
Q 021709 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL--------MRVISQNLPA----DSTLVEKVMTPNP- 219 (308)
Q Consensus 153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~--------~~~~~~~~~~----~~~~v~~~~~~~~- 219 (308)
.++.+.++ +.||+++- .++.|.++|+++-+-+..+++ ..++..+... ....+.+.+....
T Consensus 188 TivfVTHD--idEA~kLa-----dri~vm~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~ 260 (309)
T COG1125 188 TIVFVTHD--IDEALKLA-----DRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEP 260 (309)
T ss_pred EEEEEecC--HHHHHhhh-----ceEEEecCCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccccc
Confidence 35555443 45666432 357788889999999966664 3333222111 1122333332211
Q ss_pred ---eeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHH
Q 021709 220 ---ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264 (308)
Q Consensus 220 ---~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~ 264 (308)
..........+++..+...+...+||+|++|+++|.||..+++..
T Consensus 261 ~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 261 ADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred ccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 223344555668888888999999999999999999999999863
No 207
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.21 E-value=0.28 Score=41.73 Aligned_cols=87 Identities=20% Similarity=0.233 Sum_probs=59.0
Q ss_pred CEEEEECCCCcEEEEEehhHHH--------HHHHHhcc----CCcccccccccccCc----eEEeCCCcHHHHHHHhHhC
Q 021709 7 DALLLTDSNALLCGILTDKDIA--------TRVIAREL----NLEETPVSKVMTRNP----TFVLSDTLAVEALQKMVQG 70 (308)
Q Consensus 7 ~~~~V~~~~~~~~Giit~~D~~--------~~~~~~~~----~~~~~~v~~im~~~~----~~v~~~~~l~~a~~~m~~~ 70 (308)
+.+.|.+ +|+++.+-++.+++ +.++.... .+...++.+.|.+.. -.+.....-.+++..+...
T Consensus 204 dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~ 282 (309)
T COG1125 204 DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLAR 282 (309)
T ss_pred ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHhc
Confidence 3456666 68999999966555 34443331 223334555554332 1234455667788888889
Q ss_pred CCcEeeEee-CCeEEEEEeHHHHHH
Q 021709 71 KFRHLPVVE-NGEVIALLDIAKCLY 94 (308)
Q Consensus 71 ~~~~~pVvd-~~~~vGivs~~dll~ 94 (308)
+...+||+| +|+++|.++..+++.
T Consensus 283 ~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 283 GRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred CCceeEEECCCCcEeeEEEHHHHhh
Confidence 999999998 799999999999875
No 208
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=91.04 E-value=0.82 Score=43.23 Aligned_cols=127 Identities=15% Similarity=0.176 Sum_probs=92.4
Q ss_pred HHHhcCCCcccccCCCCceeEeCCCCcHH-HHHHHHHHcCCcEEEEee-C--CEEEEEeeHHHHHHHHHhcCCCcccccc
Q 021709 136 RERMFRPSLSTIIPEKSKVVTISPTDTVL-MATKKMLELRLSSAVVTV-E--NKPRGILTSKDILMRVISQNLPADSTLV 211 (308)
Q Consensus 136 ~~~~~~~~v~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~-~--~~~~Givt~~dl~~~~~~~~~~~~~~~v 211 (308)
...+....++++|.+-..+...+.+..+. +......+.+++++||.+ + ..+.|.+....+ .+..........++
T Consensus 198 ~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~--~~~~~~~~~~~~~v 275 (498)
T KOG2118|consen 198 ALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLL--RLLQVEVPLEPLPV 275 (498)
T ss_pred hHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhh--hhhccccccccccc
Confidence 33344445788888777888888888876 555666688999999998 2 234444444444 33322223335678
Q ss_pred ccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266 (308)
Q Consensus 212 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~ 266 (308)
..++......++.++++.+..+.+.+.+.+.+.|.+ ..--+|+++..|+ ....
T Consensus 276 ~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~-~~~~ 328 (498)
T KOG2118|consen 276 SESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL-EEVV 328 (498)
T ss_pred hhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccch-hhhc
Confidence 888888899999999999999999998888887776 5668999999998 6555
No 209
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=86.03 E-value=1.1 Score=43.56 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=53.5
Q ss_pred ccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECC--CCcEEEEEEhhHHHHHHHHHhc
Q 021709 208 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR--DGDVVDVVDVIHITHAAVATVG 270 (308)
Q Consensus 208 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~--~~~~iGiit~~di~~~~~~~~~ 270 (308)
...++++|.+++..+..++|..+..+.+.....+.+|+||. +..++|.|.+..+...+-....
T Consensus 587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig 651 (931)
T KOG0476|consen 587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIG 651 (931)
T ss_pred EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcC
Confidence 35688999999999999999999999998888999999974 4479999999999876655443
No 210
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=75.97 E-value=15 Score=33.59 Aligned_cols=143 Identities=16% Similarity=0.141 Sum_probs=83.9
Q ss_pred CcEEEEEehhHHHHHHHHhccCCcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHH
Q 021709 16 ALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLY 94 (308)
Q Consensus 16 ~~~~Giit~~D~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~ 94 (308)
.+-+|+||.+-+. +.... ++ ..-.++|.-++..+.+...+.+|+..|.+. .+..+| -|+ ++.|-.
T Consensus 233 ~~kVaiITtDtYR--IGA~E-QL--k~Ya~im~vp~~vv~~~~el~~ai~~l~~~---d~ILVDTaGr-----s~~D~~- 298 (407)
T COG1419 233 KKKVAIITTDTYR--IGAVE-QL--KTYADIMGVPLEVVYSPKELAEAIEALRDC---DVILVDTAGR-----SQYDKE- 298 (407)
T ss_pred CcceEEEEeccch--hhHHH-HH--HHHHHHhCCceEEecCHHHHHHHHHHhhcC---CEEEEeCCCC-----CccCHH-
Confidence 4557888877663 22211 11 145788888888999988999999998876 455566 353 112211
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcC
Q 021709 95 DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELR 174 (308)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 174 (308)
.++++.. +......++..+...-......+..+...+...++..++ +..+++++++.+.+.++.+++
T Consensus 299 -~i~el~~-------~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I-----~TKlDET~s~G~~~s~~~e~~ 365 (407)
T COG1419 299 -KIEELKE-------LIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLI-----FTKLDETTSLGNLFSLMYETR 365 (407)
T ss_pred -HHHHHHH-------HHhccccceEEEEEecCcchHHHHHHHHHhccCCcceeE-----EEcccccCchhHHHHHHHHhC
Confidence 1111111 111112233333333334444445555555555555444 566888889999999999998
Q ss_pred CcEEEEeeCCE
Q 021709 175 LSSAVVTVENK 185 (308)
Q Consensus 175 ~~~~~V~~~~~ 185 (308)
....+|+++.+
T Consensus 366 ~PV~YvT~GQ~ 376 (407)
T COG1419 366 LPVSYVTNGQR 376 (407)
T ss_pred CCeEEEeCCCC
Confidence 88888888544
No 211
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=71.78 E-value=16 Score=36.02 Aligned_cols=91 Identities=13% Similarity=0.125 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCcc----cc-----cccc-ccccCceeecCCCCHHHH
Q 021709 163 VLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPAD----ST-----LVEK-VMTPNPECATIDTPIVDA 231 (308)
Q Consensus 163 ~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~----~~-----~v~~-~~~~~~~~v~~~~~l~~~ 231 (308)
+.++.+.+...+ ..++++| +|.++.+....+++..+...+..+. .. -+.- +....|..|....-..+.
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al~~~~pv~v~g~EH~~~~ 139 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAISGQPVKTMGDQHFKQA 139 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHHhcCCceEEecHHHHHHh
Confidence 445555555555 5777788 9999999998888644433222211 10 1111 112455556555544443
Q ss_pred HHHHHhCCCCEEEEECCCCcEEEEEE
Q 021709 232 LHIMHDGKFLHLPVVDRDGDVVDVVD 257 (308)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~~~~iGiit 257 (308)
+..-.+...||.|.+|+++|+|+
T Consensus 140 ---~~~~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 140 ---LHNWAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred ---ccCceEEeeEEEcCCCCEEEEEE
Confidence 33345567899999999999996
No 212
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=62.08 E-value=10 Score=36.08 Aligned_cols=124 Identities=19% Similarity=0.140 Sum_probs=78.9
Q ss_pred CCccccccccccc--CceEEeCCCcHH-HHHHHhHhCCCcEeeEeeC--CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHH
Q 021709 37 NLEETPVSKVMTR--NPTFVLSDTLAV-EALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIA 111 (308)
Q Consensus 37 ~~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~--~~~vGivs~~dll~~~~~~~~~~~~~~~~~~ 111 (308)
.+....++++|.+ .+..+..+..+. +.+....++++.++||.+. ...+|.+-....+.....
T Consensus 200 ~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~------------- 266 (498)
T KOG2118|consen 200 ELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQV------------- 266 (498)
T ss_pred HHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhcc-------------
Confidence 3445567888864 455666676665 5566667999999999984 233333211222111000
Q ss_pred HHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEee
Q 021709 112 AAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILT 191 (308)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt 191 (308)
...+...++...+. .....+++++++.+.++.+.+.+.+.+.|.+...-+++++
T Consensus 267 ------------------------~~~~~~~~v~~~~~--~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~~~~~~~~~ 320 (498)
T KOG2118|consen 267 ------------------------EVPLEPLPVSESAL--LRLPLVPENMPLLDLLNEFQKGKSHMAVVRNGHVDIFVLT 320 (498)
T ss_pred ------------------------ccccccccchhhhc--cccccCCCcccHHHHHHHHhhhhceeEEEecCCcceeeEe
Confidence 00122233445554 5788899999999999999997777777777666788899
Q ss_pred HHHHHHHHH
Q 021709 192 SKDILMRVI 200 (308)
Q Consensus 192 ~~dl~~~~~ 200 (308)
..++ ....
T Consensus 321 l~~~-~~~~ 328 (498)
T KOG2118|consen 321 LEDL-EEVV 328 (498)
T ss_pred ccch-hhhc
Confidence 8887 4544
No 213
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=57.32 E-value=25 Score=23.96 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=20.1
Q ss_pred CCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709 240 FLHLPVVDRDGDVVDVVDVIHITHAAV 266 (308)
Q Consensus 240 ~~~l~Vvd~~~~~iGiit~~di~~~~~ 266 (308)
...+-|+|++|..+|+++..+-++..-
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~ 38 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAK 38 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHH
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHH
Confidence 456778899999999999999887544
No 214
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=48.31 E-value=45 Score=22.73 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=22.2
Q ss_pred CcCEEEEECCCCcEEEEEehhHHHHHHHHhccCC
Q 021709 5 RVDALLLTDSNALLCGILTDKDIATRVIARELNL 38 (308)
Q Consensus 5 ~~~~~~V~~~~~~~~Giit~~D~~~~~~~~~~~~ 38 (308)
+...+-|++.+|..+|+++..+-++.+-....++
T Consensus 11 ~~~~VrlI~~~g~~lGv~~~~eAl~~A~~~~lDL 44 (76)
T PF05198_consen 11 RAPEVRLIDEDGEQLGVMSLREALRLAKEKGLDL 44 (76)
T ss_dssp --SEEEEE-TTS-EEEEEEHHHHHHHHHHTT-EE
T ss_pred CCCEEEEECCCCcEeceEEHHHHHHHHHHcCCcE
Confidence 4567888899999999999999985554444443
No 215
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=48.28 E-value=20 Score=26.43 Aligned_cols=17 Identities=53% Similarity=0.827 Sum_probs=12.8
Q ss_pred EEEEECCCCcEEEEEEh
Q 021709 242 HLPVVDRDGDVVDVVDV 258 (308)
Q Consensus 242 ~l~Vvd~~~~~iGiit~ 258 (308)
..||.|.+|+++|+|+.
T Consensus 93 ~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 93 FAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEE-TTS-EEEEEEE
T ss_pred EEeeECCCCcEEEEEEE
Confidence 36999989999999964
No 216
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=39.08 E-value=43 Score=31.87 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=31.9
Q ss_pred CHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709 227 PIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266 (308)
Q Consensus 227 ~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~ 266 (308)
.++.+.+.....+-..++|+. +|+++|+|.++|+++...
T Consensus 414 ~l~~~~~~vs~~GGTPL~V~~-~~~~~GVI~LkDivK~Gi 452 (681)
T COG2216 414 DLDAAVDEVSRLGGTPLVVVE-NGRILGVIYLKDIVKPGI 452 (681)
T ss_pred HHHHHHHHHHhcCCCceEEEE-CCEEEEEEEehhhcchhH
Confidence 466777777778777888885 899999999999997654
No 217
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=38.61 E-value=1.5e+02 Score=29.28 Aligned_cols=79 Identities=22% Similarity=0.223 Sum_probs=48.8
Q ss_pred CEEEEECCCCcEEEEEehhHHHHHHHHhccCC----cccc-----ccccc-ccCceEEeCCCcHHHHHHHhHhCCCcEee
Q 021709 7 DALLLTDSNALLCGILTDKDIATRVIARELNL----EETP-----VSKVM-TRNPTFVLSDTLAVEALQKMVQGKFRHLP 76 (308)
Q Consensus 7 ~~~~V~~~~~~~~Giit~~D~~~~~~~~~~~~----~~~~-----v~~im-~~~~~~v~~~~~l~~a~~~m~~~~~~~~p 76 (308)
..+++.|.+|.++.+....++++........+ .+.. ++... .+.++.+....=+.+.. ........|
T Consensus 73 ~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al~~~~pv~v~g~EH~~~~~---~~~~c~aaP 149 (638)
T PRK11388 73 CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAISGQPVKTMGDQHFKQAL---HNWAFCATP 149 (638)
T ss_pred cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHHhcCCceEEecHHHHHHhc---cCceEEeeE
Confidence 67888999999999999999875544322222 1111 11111 23455555554444443 333456789
Q ss_pred Eee-CCeEEEEEe
Q 021709 77 VVE-NGEVIALLD 88 (308)
Q Consensus 77 Vvd-~~~~vGivs 88 (308)
|.+ +|+++|+++
T Consensus 150 I~d~~G~liGvl~ 162 (638)
T PRK11388 150 VFDSKGRLTGTIA 162 (638)
T ss_pred EEcCCCCEEEEEE
Confidence 998 699999996
No 218
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=32.62 E-value=31 Score=24.84 Aligned_cols=19 Identities=37% Similarity=0.403 Sum_probs=15.3
Q ss_pred hCCCCEEEEECCCCcEEEE
Q 021709 237 DGKFLHLPVVDRDGDVVDV 255 (308)
Q Consensus 237 ~~~~~~l~Vvd~~~~~iGi 255 (308)
..+.+--||+|.+|+++||
T Consensus 102 ~~G~SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 102 RPGSSGGPVFDSDGRVVGI 120 (120)
T ss_dssp STTTTTSEEEETTSEEEEE
T ss_pred CCCcEeHhEECCCCEEEeC
Confidence 3456667999999999997
No 219
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=31.77 E-value=53 Score=22.08 Aligned_cols=16 Identities=38% Similarity=0.914 Sum_probs=13.4
Q ss_pred EEEECCCCcEEEEEEh
Q 021709 243 LPVVDRDGDVVDVVDV 258 (308)
Q Consensus 243 l~Vvd~~~~~iGiit~ 258 (308)
.||.+++|+++|++..
T Consensus 19 ~pi~~~~g~~~Gvv~~ 34 (81)
T PF02743_consen 19 VPIYDDDGKIIGVVGI 34 (81)
T ss_dssp EEEEETTTEEEEEEEE
T ss_pred EEEECCCCCEEEEEEE
Confidence 5889889999999853
No 220
>CHL00199 infC translation initiation factor 3; Provisional
Probab=29.36 E-value=86 Score=25.40 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=20.5
Q ss_pred CcCEEEEECCCCcEEEEEehhHHHHHHHHhc
Q 021709 5 RVDALLLTDSNALLCGILTDKDIATRVIARE 35 (308)
Q Consensus 5 ~~~~~~V~~~~~~~~Giit~~D~~~~~~~~~ 35 (308)
+.+.+-|++.+|..+|+++..+.++.+....
T Consensus 23 ~~~~VrlI~~~G~~lGv~~~~eAl~~A~~~~ 53 (182)
T CHL00199 23 RFPKVRVIDDSGEQLGIFTSEQAIQLAANQG 53 (182)
T ss_pred CCCEEEEECCCCcCCCceeHHHHHHHHHHcC
Confidence 3556777777777778887777775443333
No 221
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=26.42 E-value=23 Score=24.19 Aligned_cols=27 Identities=7% Similarity=0.010 Sum_probs=17.4
Q ss_pred hhhHHHHHHhhccCCCCCchhhhcccc
Q 021709 281 STMMQKFWDSAMALSPNDDEEDNRRFY 307 (308)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (308)
.....+..+..+.++++.++|+|.+||
T Consensus 12 G~~~l~~l~~~~~~~l~~~~~~Tl~G~ 38 (81)
T PF03471_consen 12 GSTPLDDLNELLGLDLPEEDYDTLGGL 38 (81)
T ss_dssp TTSBHHHHHHHHTS-TTTTTTSBHHHH
T ss_pred ecCCHHHHHHHHCcCCCccchhhHHHH
Confidence 334445556667777777788888876
No 222
>PF14044 NETI: NETI protein
Probab=26.05 E-value=88 Score=19.94 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=19.3
Q ss_pred eecCCCCHHHHHHHHHhCCCCEEEE
Q 021709 221 CATIDTPIVDALHIMHDGKFLHLPV 245 (308)
Q Consensus 221 ~v~~~~~l~~~~~~~~~~~~~~l~V 245 (308)
-|..+.|+.++++.|.+.++ .||
T Consensus 3 eV~enETI~~CL~RM~~eGY--~Pv 25 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEGY--MPV 25 (57)
T ss_pred eccCCCcHHHHHHHHHHcCC--Cce
Confidence 46789999999999999887 444
No 223
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=24.82 E-value=86 Score=24.81 Aligned_cols=19 Identities=32% Similarity=0.702 Sum_probs=15.4
Q ss_pred cEeeEeeCCeEEEEEeHHH
Q 021709 73 RHLPVVENGEVIALLDIAK 91 (308)
Q Consensus 73 ~~~pVvd~~~~vGivs~~d 91 (308)
-.+||+.+|+++|+++...
T Consensus 117 IVvPi~~~g~~iGvlDiDS 135 (163)
T COG1956 117 IVVPIFKDGKLIGVLDIDS 135 (163)
T ss_pred EEEEEEECCEEEEEEecCC
Confidence 3579999999999997543
No 224
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=24.68 E-value=2e+02 Score=27.56 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=32.9
Q ss_pred cHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHH
Q 021709 59 LAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARM 100 (308)
Q Consensus 59 ~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~ 100 (308)
.+..+.....+.+-.-++|++++++.|++...|+++-.+.+.
T Consensus 414 ~l~~~~~~vs~~GGTPL~V~~~~~~~GVI~LkDivK~Gi~ER 455 (681)
T COG2216 414 DLDAAVDEVSRLGGTPLVVVENGRILGVIYLKDIVKPGIKER 455 (681)
T ss_pred HHHHHHHHHHhcCCCceEEEECCEEEEEEEehhhcchhHHHH
Confidence 355555666667777889999999999999999998766543
No 225
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=23.76 E-value=79 Score=25.51 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=0.0
Q ss_pred CCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709 239 KFLHLPVVDRDGDVVDVVDVIHITHAA 265 (308)
Q Consensus 239 ~~~~l~Vvd~~~~~iGiit~~di~~~~ 265 (308)
....+-|+|++|..+|+++..+.++.+
T Consensus 18 ~~~~Vrli~~dG~~lgv~~~~eAl~~A 44 (177)
T PRK00028 18 RAREVRLIGDDGEQLGIVSTREALELA 44 (177)
T ss_pred CCCEEEEECCCCcCCCceeHHHHHHHH
No 226
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=23.42 E-value=2.5e+02 Score=27.47 Aligned_cols=80 Identities=13% Similarity=0.062 Sum_probs=46.2
Q ss_pred EEEEee-CCEEEEEeeHHHHHHHHHhc----CCCccc-----cccc-cccccCceeecCCCCHHHHHHHHHhCCCCEEEE
Q 021709 177 SAVVTV-ENKPRGILTSKDILMRVISQ----NLPADS-----TLVE-KVMTPNPECATIDTPIVDALHIMHDGKFLHLPV 245 (308)
Q Consensus 177 ~~~V~~-~~~~~Givt~~dl~~~~~~~----~~~~~~-----~~v~-~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~V 245 (308)
++.++| +|.++++....-....+-.- +-.... .-|+ .+....++++..+.-...+. ..-.+...||
T Consensus 89 ~vLLtD~~GViL~~~G~~~~~~~~rk~gl~~Ga~WSE~~~GTNgIGTcLve~~aVtI~~~qHF~~~~---~~lsCsAaPI 165 (606)
T COG3284 89 CVLLTDADGVILERRGDPRDDEDFRKAGLWLGAVWSEPREGTNGIGTCLVEGEAVTIHGDQHFIQAH---HGLSCSAAPI 165 (606)
T ss_pred EEEEEcCceeEEEeecChhhhhhhhhhccccccccccccccccchhhhhccCcceEEehhhhHhhcc---cCceeeeecc
Confidence 666778 88888877662221122111 111111 1122 12345788888777555443 2224456899
Q ss_pred ECCCCcEEEEEEhh
Q 021709 246 VDRDGDVVDVVDVI 259 (308)
Q Consensus 246 vd~~~~~iGiit~~ 259 (308)
.|++|+++|++..+
T Consensus 166 ~D~qG~L~gVLDIS 179 (606)
T COG3284 166 FDEQGELVGVLDIS 179 (606)
T ss_pred ccCCCcEEEEEEec
Confidence 99999999999655
No 227
>PHA00673 acetyltransferase domain containing protein
Probab=22.38 E-value=1.7e+02 Score=23.05 Aligned_cols=33 Identities=21% Similarity=0.151 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEh
Q 021709 226 TPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDV 258 (308)
Q Consensus 226 ~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~ 258 (308)
.+..++++.+...+-..+.|...+|+++|.+..
T Consensus 40 ~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l 72 (154)
T PHA00673 40 APDHHAYAGMEAAGVAHFLGVFRGEELVGFACL 72 (154)
T ss_pred chhHHHHHHHHhCCCcEEEEEEECCEEEEEEEE
Confidence 667788999999888888888668999997654
No 228
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=21.53 E-value=1.8e+02 Score=23.30 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=0.0
Q ss_pred CCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCc------cccccccccc
Q 021709 174 RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA------DSTLVEKVMT 216 (308)
Q Consensus 174 ~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~------~~~~v~~~~~ 216 (308)
+++-+-+++ +|.-+|+++..+-+..+-..+.+. ...||+.+|+
T Consensus 17 r~~evrlIg~~GeqlGiv~~~eAL~lA~e~~LDLV~Ispna~PPVcKImD 66 (176)
T COG0290 17 RAREVRLIGEDGEQLGIVSIEEALKLAEEAGLDLVEISPNAKPPVCKIMD 66 (176)
T ss_pred cccEEEEECCCCcEEcceeHHHHHHHHHHcCCCEEEECCCCCCCeeEeee
No 229
>CHL00199 infC translation initiation factor 3; Provisional
Probab=20.63 E-value=1.2e+02 Score=24.66 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709 239 KFLHLPVVDRDGDVVDVVDVIHITHAAVA 267 (308)
Q Consensus 239 ~~~~l~Vvd~~~~~iGiit~~di~~~~~~ 267 (308)
..+.+-|+|++|..+|+++..+.++.+-.
T Consensus 23 ~~~~VrlI~~~G~~lGv~~~~eAl~~A~~ 51 (182)
T CHL00199 23 RFPKVRVIDDSGEQLGIFTSEQAIQLAAN 51 (182)
T ss_pred CCCEEEEECCCCcCCCceeHHHHHHHHHH
Confidence 34567789999999999999988875543
No 230
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=20.37 E-value=90 Score=24.87 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=0.0
Q ss_pred CCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709 239 KFLHLPVVDRDGDVVDVVDVIHITHAA 265 (308)
Q Consensus 239 ~~~~l~Vvd~~~~~iGiit~~di~~~~ 265 (308)
..+.+-++|++|..+|+++..+.++.+
T Consensus 6 ~~~~Vrli~~dG~~lgv~~~~eAl~~A 32 (165)
T TIGR00168 6 RFNEVRLIDENGEQLGIVSREEALEIA 32 (165)
T ss_pred CCCEEEEECCCCcCCCcccHHHHHHHH
No 231
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=20.26 E-value=99 Score=21.88 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=10.3
Q ss_pred EEEECCCCcEEEEE
Q 021709 243 LPVVDRDGDVVDVV 256 (308)
Q Consensus 243 l~Vvd~~~~~iGii 256 (308)
.|+.|++|++.|++
T Consensus 86 ~P~~~~~g~~~G~v 99 (106)
T PF13596_consen 86 RPYRDEDGEYAGAV 99 (106)
T ss_dssp EEEE-TTS-EEEEE
T ss_pred EEEECCCCCEEEEE
Confidence 48888889999987
Done!