BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021710
         (308 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
           Responsive Gene
          Length = 136

 Score = 38.9 bits (89), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 21  LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITH 80
           LE+ ++ AK L++ ++ N  ++ PYV        + +  ++  G+T P WNE F   ++ 
Sbjct: 12  LEVVLVSAKGLEDADFLN--NMDPYVQLTCRTQDQKSNVAEGMGTT-PEWNETFIFTVSE 68

Query: 81  SVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQY 125
              E  L  +IF   +  T    VG    PL  +    S  PT Y
Sbjct: 69  GTTE--LKAKIFDKDVG-TEDDAVGEATIPLEPVFVEGSIPPTAY 110


>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
           Ubiquitin-Protein Ligase Nedd4-Like Protein
          Length = 155

 Score = 31.6 bits (70), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 65  STRPVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQ 124
           +  P WNE F   +  S     L  E+F      T    +G V  PL+HL   D +    
Sbjct: 70  TLNPKWNEEFYFRVNPS--NHRLLFEVFDEN-RLTRDDFLGQVDVPLSHLPTEDPTMERP 126

Query: 125 YVRKLEVLRP---SGRPQGKIRVKL 146
           Y  K  +LRP     R +G +R+K+
Sbjct: 127 YTFKDFLLRPRSHKSRVKGFLRLKM 151


>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
           Mctp2 Protein
          Length = 133

 Score = 30.4 bits (67), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 65  STRPVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQ 124
           +  P WN+ FT PI       VL + +F     + P   +G V  PL  + D    +P  
Sbjct: 55  NLNPEWNKVFTFPIKDI--HDVLEVTVFDED-GDKPPDFLGKVAIPLLSIRD---GQPNC 108

Query: 125 YVRKLEVLRPSGRPQGKIRVKLVLN 149
           YV K + L  + +    + + L+ N
Sbjct: 109 YVLKNKDLEQAFKGVIYLEMDLIYN 133


>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
           Complexed With Ca2+ And Ptdins(4,5)p2
 pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
 pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
          Length = 137

 Score = 29.3 bits (64), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 7/108 (6%)

Query: 12  HMSSPITHD-LEITIICAKHLKNVNWRNGGDLKPYVVFYV--DPAYRLATQSDDSGST-R 67
           ++ + +T + L +T+  AK+L  ++    G   PYV   +  DP      ++    ST  
Sbjct: 8   YLKAEVTDEKLHVTVRDAKNLIPMD--PNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLN 65

Query: 68  PVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLV 115
           P WNE FT  +  S ++  L++EI+    + T    +GS+ F ++ L+
Sbjct: 66  PQWNESFTFKLKPSDKDRRLSVEIWDWDRT-TRNDFMGSLSFGVSELM 112


>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
           Ca2+ And Phosphatidylserine
          Length = 139

 Score = 29.3 bits (64), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 7/108 (6%)

Query: 12  HMSSPITHD-LEITIICAKHLKNVNWRNGGDLKPYVVFYV--DPAYRLATQSDDSGST-R 67
           ++ + +T + L +T+  AK+L  ++    G   PYV   +  DP      ++    ST  
Sbjct: 9   YLKAEVTDEKLHVTVRDAKNLIPMD--PNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLN 66

Query: 68  PVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLV 115
           P WNE FT  +  S ++  L++EI+    + T    +GS+ F ++ L+
Sbjct: 67  PQWNESFTFKLKPSDKDRRLSVEIWDWDRT-TRNDFMGSLSFGVSELM 113


>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
           Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
          Length = 140

 Score = 27.3 bits (59), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 68  PVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHL 114
           P WNE FT  +  S ++  L++EI+    + T     GS+ F ++ L
Sbjct: 68  PQWNESFTFKLKPSDKDRRLSVEIWDWDRT-TRNDFXGSLSFGVSEL 113


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.133    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,838,151
Number of Sequences: 62578
Number of extensions: 284371
Number of successful extensions: 412
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 411
Number of HSP's gapped (non-prelim): 7
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)