Query 021710
Match_columns 308
No_of_seqs 254 out of 1305
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 05:04:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021710.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021710hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04016 C2_Tollip C2 domain pr 99.9 4.7E-22 1E-26 162.4 15.6 118 19-148 2-121 (121)
2 cd08681 C2_fungal_Inn1p-like C 99.9 7.6E-21 1.6E-25 153.6 13.4 118 19-148 1-118 (118)
3 cd04042 C2A_MCTP_PRT C2 domain 99.9 1.4E-20 3E-25 153.1 14.8 120 20-150 1-121 (121)
4 cd08682 C2_Rab11-FIP_classI C2 99.9 9.7E-21 2.1E-25 155.1 13.5 119 21-147 1-126 (126)
5 cd04022 C2A_MCTP_PRT_plant C2 99.9 2.1E-20 4.5E-25 153.4 15.0 122 20-150 1-127 (127)
6 cd04051 C2_SRC2_like C2 domain 99.8 1.4E-20 3.1E-25 153.6 12.6 122 20-144 1-125 (125)
7 cd04019 C2C_MCTP_PRT_plant C2 99.8 4.4E-20 9.5E-25 156.2 15.4 126 20-151 1-134 (150)
8 cd04044 C2A_Tricalbin-like C2 99.8 1.2E-19 2.7E-24 147.2 14.0 122 19-150 2-124 (124)
9 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 3.1E-19 6.8E-24 145.6 15.5 118 21-148 2-121 (121)
10 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.8E-19 3.9E-24 148.1 14.1 113 20-144 1-125 (126)
11 cd04015 C2_plant_PLD C2 domain 99.8 3.1E-19 6.8E-24 152.3 15.9 122 18-149 6-158 (158)
12 cd08375 C2_Intersectin C2 doma 99.8 3.7E-19 8.1E-24 148.1 15.4 122 18-148 14-135 (136)
13 cd08378 C2B_MCTP_PRT_plant C2 99.8 2.2E-19 4.7E-24 146.5 13.7 118 21-149 2-120 (121)
14 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 4.9E-19 1.1E-23 145.9 15.0 124 20-149 1-133 (133)
15 cd08678 C2_C21orf25-like C2 do 99.8 7.1E-19 1.5E-23 144.1 15.6 118 21-151 1-122 (126)
16 cd04024 C2A_Synaptotagmin-like 99.8 5.6E-19 1.2E-23 144.3 14.6 122 19-148 1-128 (128)
17 cd08400 C2_Ras_p21A1 C2 domain 99.8 8.8E-19 1.9E-23 143.8 15.7 118 19-150 4-124 (126)
18 cd08376 C2B_MCTP_PRT C2 domain 99.8 7.1E-19 1.5E-23 141.6 14.8 115 20-149 1-115 (116)
19 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 7.8E-19 1.7E-23 143.0 14.4 117 20-147 1-123 (123)
20 cd04036 C2_cPLA2 C2 domain pre 99.8 7.4E-19 1.6E-23 142.4 14.1 115 21-149 2-118 (119)
21 cd08377 C2C_MCTP_PRT C2 domain 99.8 1E-18 2.2E-23 141.1 14.8 116 19-148 1-118 (119)
22 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 1.1E-18 2.5E-23 142.1 14.9 118 21-148 2-121 (121)
23 cd04046 C2_Calpain C2 domain p 99.8 1.5E-18 3.3E-23 142.3 15.3 119 18-151 2-124 (126)
24 cd08382 C2_Smurf-like C2 domai 99.8 1.1E-18 2.4E-23 142.6 13.7 116 20-146 1-122 (123)
25 cd08391 C2A_C2C_Synaptotagmin_ 99.8 2.6E-18 5.6E-23 138.9 14.1 116 19-148 1-121 (121)
26 cd04014 C2_PKC_epsilon C2 doma 99.8 4.3E-18 9.3E-23 140.5 15.2 119 19-150 4-130 (132)
27 cd04043 C2_Munc13_fungal C2 do 99.8 7.1E-18 1.5E-22 137.7 16.2 122 19-152 1-124 (126)
28 cd08395 C2C_Munc13 C2 domain t 99.8 2.4E-18 5.2E-23 140.3 13.1 105 20-134 1-113 (120)
29 cd08381 C2B_PI3K_class_II C2 d 99.8 2.3E-18 5E-23 140.7 11.6 104 18-131 12-121 (122)
30 cd08690 C2_Freud-1 C2 domain f 99.8 9.3E-18 2E-22 142.4 15.5 126 20-151 3-139 (155)
31 cd08677 C2A_Synaptotagmin-13 C 99.8 3E-18 6.4E-23 138.8 11.5 96 17-119 12-111 (118)
32 cd04017 C2D_Ferlin C2 domain f 99.8 1.5E-17 3.3E-22 137.9 16.0 125 19-151 1-134 (135)
33 KOG1030 Predicted Ca2+-depende 99.8 2.1E-18 4.5E-23 145.7 10.6 94 18-118 5-98 (168)
34 cd08392 C2A_SLP-3 C2 domain fi 99.8 4.8E-18 1E-22 140.1 12.3 109 18-131 14-127 (128)
35 cd08373 C2A_Ferlin C2 domain f 99.8 1.3E-17 2.8E-22 136.7 14.9 115 25-151 2-118 (127)
36 cd04028 C2B_RIM1alpha C2 domai 99.8 9E-18 2E-22 141.3 14.0 106 18-134 28-139 (146)
37 cd04039 C2_PSD C2 domain prese 99.8 6.6E-18 1.4E-22 135.2 12.4 98 19-119 1-100 (108)
38 cd04010 C2B_RasA3 C2 domain se 99.8 5.8E-18 1.3E-22 142.9 12.3 117 20-146 1-147 (148)
39 cd04029 C2A_SLP-4_5 C2 domain 99.8 1.2E-17 2.5E-22 137.1 13.1 108 17-132 13-125 (125)
40 cd04021 C2_E3_ubiquitin_ligase 99.8 2.8E-17 6.2E-22 134.7 15.3 120 19-146 2-124 (125)
41 cd04040 C2D_Tricalbin-like C2 99.8 1.8E-17 3.9E-22 133.1 13.6 114 21-144 1-114 (115)
42 cd04050 C2B_Synaptotagmin-like 99.8 9.9E-18 2.1E-22 133.0 11.8 102 20-133 1-102 (105)
43 cd08688 C2_KIAA0528-like C2 do 99.8 1E-17 2.3E-22 134.1 11.6 107 21-133 1-109 (110)
44 cd08685 C2_RGS-like C2 domain 99.7 7.9E-18 1.7E-22 137.0 10.9 106 17-131 10-119 (119)
45 cd08387 C2A_Synaptotagmin-8 C2 99.7 2.2E-17 4.7E-22 134.7 13.1 107 17-132 14-123 (124)
46 cd04011 C2B_Ferlin C2 domain s 99.7 2.9E-17 6.2E-22 131.6 13.4 106 18-134 3-111 (111)
47 cd04027 C2B_Munc13 C2 domain s 99.7 2.9E-17 6.4E-22 134.8 13.5 114 20-146 2-127 (127)
48 cd08680 C2_Kibra C2 domain fou 99.7 1.5E-17 3.3E-22 136.4 11.2 106 18-131 13-124 (124)
49 cd08394 C2A_Munc13 C2 domain f 99.7 3.5E-17 7.5E-22 134.0 12.7 100 19-133 2-101 (127)
50 cd08393 C2A_SLP-1_2 C2 domain 99.7 2.2E-17 4.7E-22 135.4 11.4 106 18-131 14-124 (125)
51 cd08385 C2A_Synaptotagmin-1-5- 99.7 4E-17 8.8E-22 133.0 12.4 107 17-132 14-123 (124)
52 cd04041 C2A_fungal C2 domain f 99.7 2.7E-17 5.7E-22 131.9 11.1 102 19-132 1-107 (111)
53 cd04049 C2_putative_Elicitor-r 99.7 5.5E-17 1.2E-21 132.3 12.9 106 19-133 1-108 (124)
54 cd04030 C2C_KIAA1228 C2 domain 99.7 5.8E-17 1.2E-21 132.4 12.2 106 18-131 15-126 (127)
55 cd04045 C2C_Tricalbin-like C2 99.7 7.9E-17 1.7E-21 131.2 12.9 105 19-135 1-105 (120)
56 cd08691 C2_NEDL1-like C2 domai 99.7 1.5E-16 3.2E-21 132.7 14.8 118 20-146 2-136 (137)
57 cd08388 C2A_Synaptotagmin-4-11 99.7 1.1E-16 2.3E-21 131.9 13.6 110 17-132 14-127 (128)
58 cd00275 C2_PLC_like C2 domain 99.7 3.1E-16 6.7E-21 127.9 15.7 117 19-148 2-127 (128)
59 cd04031 C2A_RIM1alpha C2 domai 99.7 8.2E-17 1.8E-21 131.0 12.1 106 17-132 14-125 (125)
60 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.6E-16 3.4E-21 129.6 13.6 107 17-132 14-124 (125)
61 cd08521 C2A_SLP C2 domain firs 99.7 9.8E-17 2.1E-21 130.2 12.2 106 17-131 12-123 (123)
62 cd04013 C2_SynGAP_like C2 doma 99.7 2.7E-16 6E-21 132.2 15.1 121 18-153 10-143 (146)
63 cd08390 C2A_Synaptotagmin-15-1 99.7 4.1E-16 8.8E-21 126.7 12.9 107 17-132 12-122 (123)
64 cd04052 C2B_Tricalbin-like C2 99.7 3.1E-16 6.8E-21 125.8 11.7 99 41-150 12-110 (111)
65 cd04018 C2C_Ferlin C2 domain t 99.7 3.8E-16 8.3E-21 132.2 12.5 111 20-133 1-125 (151)
66 cd08389 C2A_Synaptotagmin-14_1 99.7 4.6E-16 1E-20 127.4 12.0 105 18-132 15-123 (124)
67 cd04032 C2_Perforin C2 domain 99.7 4.6E-16 9.9E-21 128.1 11.5 94 17-116 26-119 (127)
68 PLN03008 Phospholipase D delta 99.7 5.4E-16 1.2E-20 158.6 14.3 125 17-151 12-179 (868)
69 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 7.8E-16 1.7E-20 131.9 12.5 107 17-132 25-137 (162)
70 cd08383 C2A_RasGAP C2 domain ( 99.7 1.9E-15 4.1E-20 121.5 13.8 113 21-148 2-117 (117)
71 cd08675 C2B_RasGAP C2 domain s 99.7 9.6E-16 2.1E-20 127.7 12.1 104 21-134 1-121 (137)
72 cd04009 C2B_Munc13-like C2 dom 99.7 9.6E-16 2.1E-20 126.8 11.6 98 18-119 15-121 (133)
73 cd08676 C2A_Munc13-like C2 dom 99.7 1.1E-15 2.4E-20 129.6 12.1 103 14-131 23-153 (153)
74 cd08384 C2B_Rabphilin_Doc2 C2 99.7 4E-16 8.8E-21 128.7 9.1 110 18-138 12-126 (133)
75 cd04038 C2_ArfGAP C2 domain pr 99.6 1.5E-15 3.2E-20 127.8 12.1 91 19-117 2-92 (145)
76 cd04026 C2_PKC_alpha_gamma C2 99.6 1.7E-15 3.7E-20 124.6 12.1 107 18-134 12-122 (131)
77 cd08404 C2B_Synaptotagmin-4 C2 99.6 5.1E-16 1.1E-20 128.8 8.3 111 18-139 14-129 (136)
78 KOG0696 Serine/threonine prote 99.6 1.1E-16 2.3E-21 151.8 3.9 108 17-134 178-289 (683)
79 cd04037 C2E_Ferlin C2 domain f 99.6 2.2E-15 4.7E-20 123.3 10.7 92 20-116 1-93 (124)
80 cd08407 C2B_Synaptotagmin-13 C 99.6 2.4E-15 5.2E-20 125.5 10.7 94 18-113 14-112 (138)
81 cd08405 C2B_Synaptotagmin-7 C2 99.6 3.9E-15 8.4E-20 123.4 11.1 109 18-137 14-127 (136)
82 cd08406 C2B_Synaptotagmin-12 C 99.6 3.1E-15 6.8E-20 124.6 10.2 92 18-113 14-110 (136)
83 cd08402 C2B_Synaptotagmin-1 C2 99.6 6.8E-15 1.5E-19 122.0 12.1 107 17-134 13-124 (136)
84 cd08408 C2B_Synaptotagmin-14_1 99.6 1.2E-15 2.5E-20 127.4 7.4 109 18-136 14-128 (138)
85 cd08686 C2_ABR C2 domain in th 99.6 1.8E-14 3.8E-19 116.6 13.8 82 21-113 1-92 (118)
86 cd00276 C2B_Synaptotagmin C2 d 99.6 1.7E-15 3.6E-20 124.5 7.9 109 18-137 13-126 (134)
87 cd08403 C2B_Synaptotagmin-3-5- 99.6 1.7E-15 3.8E-20 125.2 7.9 110 17-137 12-126 (134)
88 cd08409 C2B_Synaptotagmin-15 C 99.6 1.8E-15 3.8E-20 126.1 7.9 93 18-115 14-111 (137)
89 cd04048 C2A_Copine C2 domain f 99.6 1.1E-14 2.3E-19 118.2 12.3 99 25-132 6-113 (120)
90 cd08410 C2B_Synaptotagmin-17 C 99.6 1.7E-15 3.6E-20 125.8 7.7 110 18-137 13-127 (135)
91 cd08692 C2B_Tac2-N C2 domain s 99.6 8.8E-15 1.9E-19 121.3 10.5 93 18-114 13-110 (135)
92 PLN03200 cellulose synthase-in 99.6 6.6E-15 1.4E-19 162.5 12.2 121 18-151 1979-2102(2102)
93 cd04035 C2A_Rabphilin_Doc2 C2 99.6 3.1E-14 6.8E-19 115.8 12.7 96 18-118 14-115 (123)
94 KOG1028 Ca2+-dependent phospho 99.6 5E-14 1.1E-18 137.6 14.0 126 17-151 165-296 (421)
95 cd04047 C2B_Copine C2 domain s 99.5 1.7E-13 3.6E-18 109.3 11.6 89 23-116 4-100 (110)
96 PF00168 C2: C2 domain; Inter 99.5 1.5E-13 3.4E-18 102.8 8.2 83 21-108 1-85 (85)
97 PLN02270 phospholipase D alpha 99.5 9.1E-13 2E-17 135.0 14.2 126 17-151 6-150 (808)
98 KOG1011 Neurotransmitter relea 99.4 1.8E-13 4E-18 134.8 7.2 119 18-149 294-424 (1283)
99 KOG2059 Ras GTPase-activating 99.4 1.5E-12 3.2E-17 129.7 9.5 121 19-151 5-127 (800)
100 smart00239 C2 Protein kinase C 99.4 8.7E-12 1.9E-16 95.2 11.6 94 20-118 1-96 (101)
101 cd00030 C2 C2 domain. The C2 d 99.4 8.6E-12 1.9E-16 94.5 11.4 90 21-115 1-90 (102)
102 PLN02223 phosphoinositide phos 99.4 1.2E-11 2.7E-16 122.2 14.5 118 18-148 408-536 (537)
103 PLN02952 phosphoinositide phos 99.3 3.1E-11 6.7E-16 121.5 14.5 118 18-148 469-596 (599)
104 cd08374 C2F_Ferlin C2 domain s 99.3 2.6E-11 5.5E-16 100.5 10.0 97 20-118 1-125 (133)
105 cd08689 C2_fungal_Pkc1p C2 dom 99.3 1.7E-11 3.7E-16 96.7 7.4 86 21-117 1-89 (109)
106 KOG0169 Phosphoinositide-speci 99.2 5.9E-11 1.3E-15 119.8 12.3 121 19-150 616-745 (746)
107 PLN02230 phosphoinositide phos 99.2 1.2E-10 2.6E-15 117.1 13.6 120 18-148 468-597 (598)
108 PLN02222 phosphoinositide phos 99.2 2.2E-10 4.7E-15 115.1 15.0 120 18-148 451-580 (581)
109 PLN02228 Phosphoinositide phos 99.2 3.1E-10 6.8E-15 113.6 14.5 123 18-151 430-563 (567)
110 COG5038 Ca2+-dependent lipid-b 99.2 1.3E-10 2.9E-15 121.5 12.0 124 18-151 435-559 (1227)
111 COG5038 Ca2+-dependent lipid-b 99.1 1.6E-10 3.5E-15 120.9 10.1 124 18-151 1039-1163(1227)
112 KOG1028 Ca2+-dependent phospho 99.1 4.3E-10 9.2E-15 110.1 10.2 92 18-113 297-393 (421)
113 PLN02352 phospholipase D epsil 99.1 1.4E-09 3.1E-14 111.5 12.7 120 16-151 7-132 (758)
114 KOG1264 Phospholipase C [Lipid 99.0 3.2E-09 6.9E-14 107.5 12.1 121 18-151 1064-1191(1267)
115 KOG1328 Synaptic vesicle prote 99.0 1.1E-10 2.4E-15 116.7 0.6 126 16-151 111-303 (1103)
116 KOG1031 Predicted Ca2+-depende 98.9 6.7E-09 1.5E-13 102.1 8.8 128 19-150 3-137 (1169)
117 cd08683 C2_C2cd3 C2 domain fou 98.7 2.9E-08 6.2E-13 80.9 6.1 106 21-131 1-143 (143)
118 KOG3837 Uncharacterized conser 98.6 2.5E-08 5.3E-13 94.8 3.9 128 16-151 364-505 (523)
119 KOG1328 Synaptic vesicle prote 98.5 3.4E-08 7.4E-13 99.2 2.4 94 18-115 946-1048(1103)
120 KOG2059 Ras GTPase-activating 98.5 1.9E-07 4.2E-12 93.8 6.5 111 41-157 150-284 (800)
121 KOG1011 Neurotransmitter relea 98.3 1.6E-06 3.5E-11 86.5 8.5 106 18-133 1124-1237(1283)
122 KOG0905 Phosphoinositide 3-kin 98.3 6.5E-07 1.4E-11 94.1 4.5 107 17-132 1522-1634(1639)
123 KOG1013 Synaptic vesicle prote 98.1 3.3E-07 7.1E-12 85.2 -0.9 128 17-151 91-231 (362)
124 cd08684 C2A_Tac2-N C2 domain f 97.9 7.5E-06 1.6E-10 62.6 3.3 91 22-117 2-95 (103)
125 KOG1013 Synaptic vesicle prote 97.9 2.3E-05 4.9E-10 73.1 5.5 88 18-109 232-324 (362)
126 KOG2060 Rab3 effector RIM1 and 97.8 2.1E-05 4.5E-10 74.4 4.9 109 18-134 268-380 (405)
127 KOG1265 Phospholipase C [Lipid 97.8 0.0001 2.2E-09 76.1 10.0 118 13-150 697-824 (1189)
128 PLN02964 phosphatidylserine de 97.5 0.00016 3.5E-09 74.1 6.5 87 18-117 53-140 (644)
129 KOG1326 Membrane-associated pr 97.5 0.0001 2.2E-09 77.1 5.1 91 18-113 612-703 (1105)
130 PF10358 NT-C2: N-terminal C2 97.5 0.0045 9.8E-08 51.2 14.3 124 17-151 5-137 (143)
131 cd08687 C2_PKN-like C2 domain 97.3 0.0015 3.3E-08 50.3 8.3 84 42-148 9-92 (98)
132 PF12416 DUF3668: Cep120 prote 97.3 0.0038 8.3E-08 59.6 12.5 123 21-153 2-136 (340)
133 KOG1452 Predicted Rho GTPase-a 97.3 0.00079 1.7E-08 62.7 7.1 119 18-150 50-168 (442)
134 PF11618 DUF3250: Protein of u 96.9 0.0047 1E-07 49.3 7.6 98 45-149 2-105 (107)
135 PF15627 CEP76-C2: CEP76 C2 do 96.9 0.02 4.3E-07 48.7 11.5 127 18-151 8-152 (156)
136 KOG1326 Membrane-associated pr 96.8 0.00042 9.1E-09 72.6 0.6 121 19-151 206-334 (1105)
137 cd08398 C2_PI3K_class_I_alpha 96.7 0.029 6.2E-07 47.9 11.5 88 19-113 8-105 (158)
138 KOG1327 Copine [Signal transdu 96.5 0.0059 1.3E-07 60.9 6.8 87 25-116 142-236 (529)
139 cd08693 C2_PI3K_class_I_beta_d 96.4 0.02 4.3E-07 49.6 8.6 72 19-95 8-86 (173)
140 cd08380 C2_PI3K_like C2 domain 96.2 0.027 5.9E-07 47.6 8.3 91 19-113 8-106 (156)
141 cd08694 C2_Dock-A C2 domains f 96.1 0.044 9.6E-07 48.2 9.4 58 54-112 53-114 (196)
142 cd08695 C2_Dock-B C2 domains f 96.1 0.097 2.1E-06 45.9 11.1 57 54-111 53-111 (189)
143 cd08399 C2_PI3K_class_I_gamma 95.8 0.13 2.8E-06 44.8 10.6 73 19-95 10-88 (178)
144 cd08397 C2_PI3K_class_III C2 d 95.4 0.051 1.1E-06 46.4 6.8 71 41-113 29-106 (159)
145 KOG1924 RhoA GTPase effector D 95.3 0.12 2.6E-06 53.6 9.8 15 65-79 441-455 (1102)
146 cd04012 C2A_PI3K_class_II C2 d 95.0 0.1 2.2E-06 45.0 7.5 93 19-113 8-118 (171)
147 PF14429 DOCK-C2: C2 domain in 94.9 0.081 1.8E-06 46.0 6.7 59 54-113 59-120 (184)
148 KOG1924 RhoA GTPase effector D 94.7 0.13 2.7E-06 53.5 8.3 10 107-116 452-461 (1102)
149 PF00792 PI3K_C2: Phosphoinosi 93.8 0.27 5.8E-06 40.9 7.2 59 55-114 21-85 (142)
150 PF15625 CC2D2AN-C2: CC2D2A N- 93.1 0.48 1E-05 40.7 7.9 72 41-116 36-108 (168)
151 KOG1327 Copine [Signal transdu 92.4 0.35 7.7E-06 48.5 6.7 63 54-118 41-106 (529)
152 cd08679 C2_DOCK180_related C2 91.9 0.65 1.4E-05 40.1 7.2 57 56-113 54-115 (178)
153 smart00142 PI3K_C2 Phosphoinos 91.8 0.95 2.1E-05 35.3 7.4 72 21-95 13-91 (100)
154 KOG1329 Phospholipase D1 [Lipi 91.7 0.56 1.2E-05 49.6 7.6 89 42-138 138-226 (887)
155 cd08696 C2_Dock-C C2 domains f 91.0 0.94 2E-05 39.5 7.1 58 54-112 54-117 (179)
156 cd08697 C2_Dock-D C2 domains f 90.8 1.1 2.4E-05 39.3 7.4 59 54-113 56-123 (185)
157 PTZ00447 apical membrane antig 88.9 3.8 8.3E-05 39.2 9.8 117 19-151 58-175 (508)
158 PF14924 DUF4497: Protein of u 86.0 3.1 6.6E-05 33.2 6.5 68 83-150 27-105 (112)
159 KOG0694 Serine/threonine prote 85.9 0.22 4.7E-06 51.3 -0.3 96 41-150 27-122 (694)
160 KOG3543 Ca2+-dependent activat 84.7 5.3 0.00011 41.1 8.8 116 19-150 341-458 (1218)
161 PF14186 Aida_C2: Cytoskeletal 84.1 4.1 8.9E-05 34.3 6.6 94 19-117 13-115 (147)
162 PF09849 DUF2076: Uncharacteri 80.6 3.4 7.3E-05 37.9 5.3 17 265-281 143-159 (247)
163 KOG4269 Rac GTPase-activating 75.6 1.4 3E-05 46.7 1.4 67 18-95 758-828 (1112)
164 COG4395 Uncharacterized protei 74.5 3.2 6.9E-05 38.6 3.3 23 257-280 31-53 (281)
165 PF14909 SPATA6: Spermatogenes 72.5 28 0.00061 29.1 8.1 90 20-118 3-103 (140)
166 PF12732 YtxH: YtxH-like prote 71.0 2.4 5.1E-05 31.2 1.3 18 260-277 3-20 (74)
167 PF12416 DUF3668: Cep120 prote 62.0 1.3E+02 0.0029 28.8 11.6 124 18-149 191-338 (340)
168 PF06219 DUF1005: Protein of u 55.6 1.4E+02 0.0031 29.5 10.5 108 42-150 36-168 (460)
169 PF08151 FerI: FerI (NUC094) d 55.5 33 0.00071 25.3 4.9 39 113-153 5-46 (72)
170 PF10409 PTEN_C2: C2 domain of 54.7 1.1E+02 0.0023 24.6 8.5 93 19-115 4-98 (134)
171 cd05137 RasGAP_CLA2_BUD2 CLA2/ 54.3 15 0.00033 36.0 3.9 48 103-155 1-50 (395)
172 COG5178 PRP8 U5 snRNP spliceos 53.4 12 0.00026 41.2 3.2 13 193-205 21-33 (2365)
173 PF07162 B9-C2: Ciliary basal 51.6 1.5E+02 0.0033 25.1 10.7 81 21-110 4-100 (168)
174 KOG3671 Actin regulatory prote 50.5 2.9E+02 0.0062 28.1 11.9 21 262-282 532-552 (569)
175 COG4575 ElaB Uncharacterized c 49.8 10 0.00022 29.9 1.6 17 261-277 86-102 (104)
176 KOG0132 RNA polymerase II C-te 49.0 1.2E+02 0.0027 32.2 9.4 17 101-117 506-522 (894)
177 COG4803 Predicted membrane pro 47.5 6.3 0.00014 33.3 0.0 22 260-281 81-102 (170)
178 KOG0904 Phosphatidylinositol 3 45.9 68 0.0015 34.6 7.1 73 19-94 343-421 (1076)
179 PRK00523 hypothetical protein; 44.4 16 0.00036 26.9 1.8 22 266-290 15-36 (72)
180 smart00157 PRP Major prion pro 44.3 5.5 0.00012 34.8 -0.8 25 257-281 88-112 (217)
181 PF13436 Gly-zipper_OmpA: Glyc 43.5 18 0.0004 29.2 2.2 22 259-280 74-95 (118)
182 PF06897 DUF1269: Protein of u 43.3 11 0.00023 29.8 0.7 22 260-281 20-41 (102)
183 COG3133 SlyB Outer membrane li 43.0 9.8 0.00021 31.6 0.5 21 263-283 89-109 (154)
184 PF09849 DUF2076: Uncharacteri 41.0 19 0.00041 33.0 2.1 30 254-283 136-165 (247)
185 PF05818 TraT: Enterobacterial 40.3 14 0.00029 33.2 1.0 13 83-95 20-32 (215)
186 PF05808 Podoplanin: Podoplani 39.3 9.9 0.00022 32.4 0.0 26 255-280 123-148 (162)
187 PF15084 DUF4550: Domain of un 39.1 37 0.0008 26.7 3.1 50 46-95 30-83 (99)
188 PF05237 MoeZ_MoeB: MoeZ/MoeB 39.0 25 0.00054 26.3 2.2 20 264-283 26-45 (84)
189 COG4980 GvpP Gas vesicle prote 35.9 13 0.00028 30.0 0.2 16 257-272 10-25 (115)
190 PRK13731 conjugal transfer sur 33.8 20 0.00044 32.6 1.1 12 84-95 50-61 (243)
191 PF13488 Gly-zipper_Omp: Glyci 33.7 38 0.00082 22.7 2.1 18 260-277 22-39 (46)
192 KOG0906 Phosphatidylinositol 3 32.0 42 0.00091 35.0 3.0 43 68-111 77-121 (843)
193 PF06682 DUF1183: Protein of u 29.7 1.1E+02 0.0024 29.1 5.3 22 255-276 251-272 (318)
194 COG3944 Capsular polysaccharid 27.8 29 0.00063 31.1 1.0 35 260-295 174-209 (226)
195 KOG2419 Phosphatidylserine dec 27.1 17 0.00036 37.7 -0.7 35 41-78 304-338 (975)
196 PF12868 DUF3824: Domain of un 26.8 1.8E+02 0.004 24.1 5.6 6 187-192 97-102 (137)
197 COG3416 Uncharacterized protei 26.8 41 0.00089 30.0 1.7 16 265-280 144-159 (233)
198 PF13436 Gly-zipper_OmpA: Glyc 26.7 41 0.00089 27.1 1.7 22 257-278 76-97 (118)
199 PRK10404 hypothetical protein; 26.3 41 0.0009 26.4 1.6 15 257-271 83-97 (101)
200 TIGR01006 polys_exp_MPA1 polys 25.7 36 0.00077 30.2 1.2 32 261-293 177-209 (226)
201 PF10247 Romo1: Reactive mitoc 24.2 24 0.00053 25.7 -0.1 20 255-274 8-27 (67)
202 KOG3875 Peroxisomal biogenesis 23.2 1.2E+02 0.0027 28.8 4.2 13 198-210 25-37 (362)
203 PF14472 DUF4429: Domain of un 22.8 1.2E+02 0.0026 23.2 3.5 36 100-147 20-55 (94)
204 PF12868 DUF3824: Domain of un 21.3 1.1E+02 0.0024 25.4 3.2 17 273-290 20-36 (137)
205 PRK10132 hypothetical protein; 21.3 54 0.0012 26.1 1.3 15 257-271 89-103 (108)
206 KOG0260 RNA polymerase II, lar 20.8 9.7E+02 0.021 27.4 10.7 6 157-162 1477-1482(1605)
207 PF05957 DUF883: Bacterial pro 20.6 64 0.0014 24.5 1.6 13 264-276 79-91 (94)
208 cd01757 PLAT_RAB6IP1 PLAT/LH2 20.3 4.5E+02 0.0099 21.0 9.3 38 73-110 42-79 (114)
No 1
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.89 E-value=4.7e-22 Score=162.39 Aligned_cols=118 Identities=19% Similarity=0.315 Sum_probs=98.9
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710 19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE 98 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~ 98 (308)
+.|+|+|++|++|++.+ +++ +||||+++++. .+++|+++++++.||+|||+|.|.+... ...|.|+|||++ ..
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~--sDPYv~i~lg~-~~~kT~v~~~~~~nP~WNe~F~f~v~~~--~~~l~~~V~d~d-~~ 74 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTR--MDPYCRIRVGH-AVYETPTAYNGAKNPRWNKTIQCTLPEG--VDSIYIEIFDER-AF 74 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCC--CCceEEEEECC-EEEEeEEccCCCCCCccCeEEEEEecCC--CcEEEEEEEeCC-CC
Confidence 68999999999999887 554 99999999986 7889999987689999999999999763 467999999999 46
Q ss_pred CCCceeeeEEEeCcc-cccCCCCCCCceeEEEEEeCCCCC-CccEEEEEEEE
Q 021710 99 TPKPLVGSVKFPLAH-LVDSDSSEPTQYVRKLEVLRPSGR-PQGKIRVKLVL 148 (308)
Q Consensus 99 ~~d~lLG~~~ipL~~-L~~~~~~~~~~~~~~~~L~~~sg~-~~G~L~v~v~~ 148 (308)
++|++||++.|+|.+ +..+. ....||+|...+++ ..|+|+|+++|
T Consensus 75 ~~dd~iG~~~i~l~~~~~~g~-----~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 75 TMDERIAWTHITIPESVFNGE-----TLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred cCCceEEEEEEECchhccCCC-----CccccEeCcCccCCCCceEEEEEEeC
Confidence 789999999999964 55432 24699999875544 57999999975
No 2
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.86 E-value=7.6e-21 Score=153.60 Aligned_cols=118 Identities=21% Similarity=0.419 Sum_probs=99.9
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710 19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE 98 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~ 98 (308)
+.|+|+|++|++|++.+..+. +||||++++.. .+.+|+++++++.||+|||+|.|.+... ....|.|+|||++. .
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~--~dpyv~v~~~~-~~~kT~~~~~~~~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~-~ 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDK--QDPYCVLRIGG-VTKKTKTDFRGGQHPEWDEELRFEITED-KKPILKVAVFDDDK-R 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCC--CCceEEEEECC-CccccccccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCC-C
Confidence 579999999999999887764 99999999986 7889998866578999999999999864 45789999999883 3
Q ss_pred CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEE
Q 021710 99 TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVL 148 (308)
Q Consensus 99 ~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~ 148 (308)
.+++||++.|+|+++..... ...|++|.+ +++..|+|+|+++|
T Consensus 76 -~~~~iG~~~~~l~~~~~~~~-----~~~w~~L~~-~~~~~G~i~l~l~f 118 (118)
T cd08681 76 -KPDLIGDTEVDLSPALKEGE-----FDDWYELTL-KGRYAGEVYLELTF 118 (118)
T ss_pred -CCcceEEEEEecHHHhhcCC-----CCCcEEecc-CCcEeeEEEEEEEC
Confidence 48999999999999876432 258999975 56789999999986
No 3
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.86 E-value=1.4e-20 Score=153.07 Aligned_cols=120 Identities=23% Similarity=0.348 Sum_probs=102.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCC
Q 021710 20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSET 99 (308)
Q Consensus 20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~ 99 (308)
+|+|+|++|++|+..+..+. +||||++.+....+.+|+++++ +.||+|||+|.|.+.. ....|.|+|||++. ..
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~--~Dpyv~v~~~~~~~~kT~~~~~-t~nP~Wne~f~f~v~~--~~~~l~~~v~D~d~-~~ 74 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGT--SDPYVKFKYGGKTVYKSKTIYK-NLNPVWDEKFTLPIED--VTQPLYIKVFDYDR-GL 74 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCC--CCCeEEEEECCEEEEEeeeccC-CCCCccceeEEEEecC--CCCeEEEEEEeCCC-CC
Confidence 48999999999999887764 9999999998757889999998 8999999999999875 25789999999983 56
Q ss_pred CCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCC-CCccEEEEEEEEcc
Q 021710 100 PKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSG-RPQGKIRVKLVLNG 150 (308)
Q Consensus 100 ~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg-~~~G~L~v~v~~~~ 150 (308)
++++||++.|+|.++..+. ....|++|.+..+ +..|+|+|+++|.+
T Consensus 75 ~~~~iG~~~~~l~~l~~~~-----~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 TDDFMGSAFVDLSTLELNK-----PTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred CCcceEEEEEEHHHcCCCC-----CeEEEEECCCCCCccCceEEEEEEEECC
Confidence 8999999999999998654 3358999986654 67899999999863
No 4
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.85 E-value=9.7e-21 Score=155.11 Aligned_cols=119 Identities=20% Similarity=0.386 Sum_probs=97.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCC----CCCceEEEEEEeccC
Q 021710 21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHS----VRESVLTLEIFHSKL 96 (308)
Q Consensus 21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~----~~~~~L~l~V~d~~~ 96 (308)
|+|+|++|+||...+..+ .+||||++.+.. .+.+|+++++ +.||+|||+|.|.+... .....|.|+|||++
T Consensus 1 ~~V~V~~A~~L~~~d~~g--~~dpYv~v~l~~-~~~kT~v~~~-t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~- 75 (126)
T cd08682 1 VQVTVLQARGLLCKGKSG--TNDAYVIIQLGK-EKYSTSVKEK-TTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRN- 75 (126)
T ss_pred CEEEEEECcCCcCCCCCc--CCCceEEEEECC-eeeeeeeecC-CCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcc-
Confidence 589999999999887765 499999999985 7889999998 89999999999998762 24678999999998
Q ss_pred CCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCC---CCccEEEEEEE
Q 021710 97 SETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSG---RPQGKIRVKLV 147 (308)
Q Consensus 97 ~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg---~~~G~L~v~v~ 147 (308)
...+|++||++.|+|+++...... ....||+|....+ +..|+|+|+|.
T Consensus 76 ~~~~d~~iG~~~i~l~~l~~~~~~---~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 76 LLGLDKFLGQVSIPLNDLDEDKGR---RRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred ccCCCceeEEEEEEHHHhhccCCC---cccEEEECcCCCCCCccccceEEEEeC
Confidence 356799999999999999743222 3468999975433 45799999873
No 5
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.85 E-value=2.1e-20 Score=153.38 Aligned_cols=122 Identities=18% Similarity=0.376 Sum_probs=101.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCC--CCCceEEEEEEeccCC
Q 021710 20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHS--VRESVLTLEIFHSKLS 97 (308)
Q Consensus 20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~--~~~~~L~l~V~d~~~~ 97 (308)
.|+|+|++|++|...+..+ .+||||++.+.. .+.+|+++++ +.||+|||+|.|.+... +.+..|.|+|||++.
T Consensus 1 ~L~V~vi~A~~L~~~d~~g--~~dpyv~v~~~~-~~~rT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~- 75 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQG--SSSAYVELDFDG-QKKRTRTKPK-DLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR- 75 (127)
T ss_pred CeEEEEEEeeCCCCCCCCC--CcCcEEEEEECC-EEecceeEcC-CCCCccceEEEEEccCHHHccCCeEEEEEeeCCC-
Confidence 4899999999999888765 499999999986 7889999988 89999999999998753 235689999999873
Q ss_pred CC-CCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC--CCCCccEEEEEEEEcc
Q 021710 98 ET-PKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP--SGRPQGKIRVKLVLNG 150 (308)
Q Consensus 98 ~~-~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~--sg~~~G~L~v~v~~~~ 150 (308)
.. .++|||++.|+|+++..... ....||+|.++ .++.+|+|+|++.+++
T Consensus 76 ~~~~d~~lG~v~i~l~~l~~~~~----~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 76 SGRRRSFLGRVRISGTSFVPPSE----AVVQRYPLEKRGLFSRVRGEIGLKVYITD 127 (127)
T ss_pred CcCCCCeeeEEEEcHHHcCCCCC----ccceEeEeeeCCCCCCccEEEEEEEEEcC
Confidence 44 78999999999999984222 34699999865 3467999999999864
No 6
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.85 E-value=1.4e-20 Score=153.62 Aligned_cols=122 Identities=36% Similarity=0.638 Sum_probs=102.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCC---CCceEEEEEEeccC
Q 021710 20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSV---RESVLTLEIFHSKL 96 (308)
Q Consensus 20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~---~~~~L~l~V~d~~~ 96 (308)
+|+|+|++|++|+..+..+. +||||++++....+.+|+++++++.||.|||+|.|.+.... ....|.|+|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~--~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGK--MKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccC--CceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 48999999999999887654 99999999987678899998766899999999999997641 26789999999883
Q ss_pred CCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEE
Q 021710 97 SETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRV 144 (308)
Q Consensus 97 ~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v 144 (308)
...+++||++.|+|.++.............||+|++++|+.+|.|+|
T Consensus 79 -~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 79 -SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred -CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 46789999999999999876543222457899999999999999975
No 7
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.84 E-value=4.4e-20 Score=156.24 Aligned_cols=126 Identities=21% Similarity=0.287 Sum_probs=104.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCC
Q 021710 20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSET 99 (308)
Q Consensus 20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~ 99 (308)
.|+|+|++|++|...+..+. +||||++.++. .+.+|+++++++.||+|||+|.|.+... ....|.|+|||++. ..
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~--sDPYV~v~l~~-~~~kTk~~~~~t~nP~WNE~F~f~v~~~-~~~~l~v~V~d~~~-~~ 75 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRV--PEVFVKAQLGN-QVLRTRPSQTRNGNPSWNEELMFVAAEP-FEDHLILSVEDRVG-PN 75 (150)
T ss_pred CEEEEEEEeECCCCCCCCCC--CCeEEEEEECC-EEeeeEeccCCCCCCcccCcEEEEecCc-cCCeEEEEEEEecC-CC
Confidence 38999999999999888764 99999999987 8899999977469999999999998753 34689999999883 46
Q ss_pred CCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCC--------CCccEEEEEEEEccC
Q 021710 100 PKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSG--------RPQGKIRVKLVLNGR 151 (308)
Q Consensus 100 ~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg--------~~~G~L~v~v~~~~~ 151 (308)
++++||++.|+|+++....... .....||+|.+..+ +..|+|+|+|.|...
T Consensus 76 ~dd~lG~v~i~L~~l~~~~~~~-~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 76 KDEPLGRAVIPLNDIERRVDDR-PVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred CCCeEEEEEEEHHHCcccCCCC-ccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 7899999999999987542211 13479999987654 457999999999864
No 8
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.83 E-value=1.2e-19 Score=147.24 Aligned_cols=122 Identities=24% Similarity=0.406 Sum_probs=101.0
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC-CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710 19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP-AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS 97 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~-~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~ 97 (308)
+.|+|+|++|++|+..+...+ .+||||++++.. ..+.+|+++++ +.||.|||.|.|.+.. ....|.|+|||++.
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~-~~dpyv~v~~~~~~~~~kT~~~~~-~~~P~Wne~~~~~v~~--~~~~l~~~v~d~~~- 76 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGG-TVDPYVTFSISNRRELARTKVKKD-TSNPVWNETKYILVNS--LTEPLNLTVYDFND- 76 (124)
T ss_pred eEEEEEEEcccCCCcccccCC-CCCCeEEEEECCCCcceEeeeecC-CCCCcceEEEEEEeCC--CCCEEEEEEEecCC-
Confidence 679999999999997665443 589999999987 57899999998 8999999999999874 46789999999983
Q ss_pred CCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEcc
Q 021710 98 ETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNG 150 (308)
Q Consensus 98 ~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~ 150 (308)
...|++||++.++|.++....... ..+..| ..+++..|+|+|+++|.+
T Consensus 77 ~~~d~~iG~~~~~l~~l~~~~~~~----~~~~~~-~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 77 KRKDKLIGTAEFDLSSLLQNPEQE----NLTKNL-LRNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCCCceeEEEEEEHHHhccCcccc----Ccchhh-hcCCccceEEEEEEEeCC
Confidence 568899999999999998764331 234444 357888999999999864
No 9
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.82 E-value=3.1e-19 Score=145.59 Aligned_cols=118 Identities=21% Similarity=0.209 Sum_probs=98.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCCC
Q 021710 21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETP 100 (308)
Q Consensus 21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~ 100 (308)
|.|+|++|+||+..+...+ .+||||++.++...+.+|+++++ +.||+|||+|.|.+.+ ....|.|.|||++ ...+
T Consensus 2 l~v~v~~a~~L~~~~~~~g-~sDpYv~v~l~~~~~~kT~v~~k-t~~P~WnE~F~f~v~~--~~~~l~~~v~d~~-~~~~ 76 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNK-MRDCYCTVNLDQEEVFRTKTVEK-SLCPFFGEDFYFEIPR--TFRHLSFYIYDRD-VLRR 76 (121)
T ss_pred eEEEEEEccCCCCCCCCCC-CcCcEEEEEECCccEEEeeEEEC-CCCCccCCeEEEEcCC--CCCEEEEEEEECC-CCCC
Confidence 7899999999998643332 58999999998656789999998 9999999999999986 3478999999998 4678
Q ss_pred CceeeeEEEeCcccccCCCCCCCceeEEEEEeCC--CCCCccEEEEEEEE
Q 021710 101 KPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP--SGRPQGKIRVKLVL 148 (308)
Q Consensus 101 d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~--sg~~~G~L~v~v~~ 148 (308)
+++||.+.|+|+++.... ....||+|... .++.+|+|+++++|
T Consensus 77 ~~~iG~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 77 DSVIGKVAIKKEDLHKYY-----GKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CceEEEEEEEHHHccCCC-----CcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 999999999999998643 34689999753 34568999999875
No 10
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.82 E-value=1.8e-19 Score=148.14 Aligned_cols=113 Identities=27% Similarity=0.485 Sum_probs=94.1
Q ss_pred EEEEEEEEeec---CCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccC
Q 021710 20 DLEITIICAKH---LKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKL 96 (308)
Q Consensus 20 ~L~VtIisAk~---L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~ 96 (308)
.|+|+|++|++ |...+..+. +||||+++++. ++.||+++++ +.||+|||+|.|.+... ...|.|+|||++.
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~--sDPYv~i~~g~-~~~rTk~~~~-~~nP~WnE~f~f~v~~~--~~~l~v~V~d~d~ 74 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGS--TDAYCVAKYGP-KWVRTRTVED-SSNPRWNEQYTWPVYDP--CTVLTVGVFDNSQ 74 (126)
T ss_pred CeEEEEEEeECCccccccccCCC--CCeeEEEEECC-EEeEcCcccC-CCCCcceeEEEEEecCC--CCEEEEEEEECCC
Confidence 38999999999 787787764 99999999986 7889999998 89999999999999763 4589999999883
Q ss_pred CC------CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC---CCCccEEEE
Q 021710 97 SE------TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS---GRPQGKIRV 144 (308)
Q Consensus 97 ~~------~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s---g~~~G~L~v 144 (308)
. ..|++||++.|+|.++..+. ....||+|++.+ .+..|+|++
T Consensus 75 -~~~~~~~~~dd~lG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 75 -SHWKEAVQPDVLIGKVRIRLSTLEDDR-----VYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred -ccccccCCCCceEEEEEEEHHHccCCC-----EEeeEEEeEeCCCCCccCCcEEEe
Confidence 3 38999999999999988654 346899998654 345677764
No 11
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.82 E-value=3.1e-19 Score=152.26 Aligned_cols=122 Identities=26% Similarity=0.404 Sum_probs=100.4
Q ss_pred ccEEEEEEEEeecCCCCCCC----------------------------CCCCCCcEEEEEEcCCceEEEEeecCCCCCCc
Q 021710 18 THDLEITIICAKHLKNVNWR----------------------------NGGDLKPYVVFYVDPAYRLATQSDDSGSTRPV 69 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~----------------------------~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~ 69 (308)
.++|+|+|++|++|.+.+.. ..+.+||||+|+++...+.+|+++++ +.||+
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~-~~nP~ 84 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIEN-SENPV 84 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCC-CCCCc
Confidence 58999999999999987631 12258999999998756679999998 79999
Q ss_pred cccEEEEeeeCCCCCceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC---ccEEEEEE
Q 021710 70 WNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP---QGKIRVKL 146 (308)
Q Consensus 70 WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~---~G~L~v~v 146 (308)
|||+|.|.+... ...|.|+|||++. . .+++||++.|+|+++..+. ....|++|.+.++++ .++|+|++
T Consensus 85 WnE~F~~~~~~~--~~~l~~~V~d~d~-~-~~~~IG~~~i~l~~l~~g~-----~~~~w~~L~~~~~~~~~~~~~l~v~~ 155 (158)
T cd04015 85 WNESFHIYCAHY--ASHVEFTVKDNDV-V-GAQLIGRAYIPVEDLLSGE-----PVEGWLPILDSNGKPPKPGAKIRVSL 155 (158)
T ss_pred cceEEEEEccCC--CCEEEEEEEeCCC-c-CCcEEEEEEEEhHHccCCC-----CcceEEECcCCCCCCCCCCCEEEEEE
Confidence 999999998753 4679999999983 3 5789999999999998643 346999998766553 58999999
Q ss_pred EEc
Q 021710 147 VLN 149 (308)
Q Consensus 147 ~~~ 149 (308)
+|.
T Consensus 156 ~f~ 158 (158)
T cd04015 156 QFT 158 (158)
T ss_pred EEC
Confidence 884
No 12
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.82 E-value=3.7e-19 Score=148.11 Aligned_cols=122 Identities=20% Similarity=0.358 Sum_probs=100.5
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS 97 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~ 97 (308)
.+.|+|+|++|++|+..+..+. +||||++.+.. .+.+|+++++ +.||.|||+|.|.+... ....|.|+|||++ .
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~g~--~DPYv~v~~~~-~~~kT~vi~~-t~nP~Wne~f~f~v~~~-~~~~l~i~V~D~d-~ 87 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSNGK--SDPYCEVSMGS-QEHKTKVVSD-TLNPKWNSSMQFFVKDL-EQDVLCITVFDRD-F 87 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCCCC--cCcEEEEEECC-EeeeccccCC-CCCCccCceEEEEecCc-cCCEEEEEEEECC-C
Confidence 4899999999999999887764 99999999975 7899999998 89999999999999753 4578999999998 3
Q ss_pred CCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEE
Q 021710 98 ETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVL 148 (308)
Q Consensus 98 ~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~ 148 (308)
...|++||++.|+|.++.............|+.| ++...|+|+|++.|
T Consensus 88 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~---~~~~~g~i~l~~~~ 135 (136)
T cd08375 88 FSPDDFLGRTEIRVADILKETKESKGPITKRLLL---HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCCeeEEEEEEHHHhccccccCCCcEEEEecc---ccccceeEEEEEEe
Confidence 5678999999999999986332221133456666 46678999999987
No 13
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.82 E-value=2.2e-19 Score=146.54 Aligned_cols=118 Identities=17% Similarity=0.313 Sum_probs=98.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCCC
Q 021710 21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETP 100 (308)
Q Consensus 21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~ 100 (308)
|+|+|++|++|... . +||||++.+.. .+.+|+++++ +.||+|||+|.|.+... ....|.|+|||++. . .
T Consensus 2 L~V~Vi~a~~L~~~----~--~Dpyv~v~l~~-~~~kT~v~~~-t~nP~Wne~F~f~~~~~-~~~~L~~~v~d~d~-~-~ 70 (121)
T cd08378 2 LYVRVVKARGLPAN----S--NDPVVEVKLGN-YKGSTKAIER-TSNPEWNQVFAFSKDRL-QGSTLEVSVWDKDK-A-K 70 (121)
T ss_pred EEEEEEEecCCCcc----c--CCCEEEEEECC-ccccccccCC-CCCCccceEEEEEcCCC-cCCEEEEEEEeCCC-C-c
Confidence 89999999999876 3 89999999986 7899999998 89999999999998653 46789999999983 3 7
Q ss_pred CceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC-CCCccEEEEEEEEc
Q 021710 101 KPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS-GRPQGKIRVKLVLN 149 (308)
Q Consensus 101 d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s-g~~~G~L~v~v~~~ 149 (308)
+++||++.|+|+++.............||.|.+.. .+..|+|+|+|+|.
T Consensus 71 ~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 71 DDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred CceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 89999999999998764322111346899998754 36789999999984
No 14
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.81 E-value=4.9e-19 Score=145.94 Aligned_cols=124 Identities=20% Similarity=0.350 Sum_probs=101.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC------ceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEe
Q 021710 20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA------YRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFH 93 (308)
Q Consensus 20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~------~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d 93 (308)
.|+|+|++|++|...+..+. .||||++.+... .+.+|+++++ +.||+|||+|.|.+.. ....|.|+|||
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~--~Dpyv~v~~~~~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~--~~~~l~~~v~d 75 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGA--SDPYVKISLYDPDGNGEIDSVQTKTIKK-TLNPKWNEEFFFRVNP--REHRLLFEVFD 75 (133)
T ss_pred CEEEEEEEeECCCcccCCCC--cCcEEEEEEECCCCCCcccceeeeEEcC-CCCCcEeeEEEEEEcC--CCCEEEEEEEE
Confidence 38999999999999887764 999999999753 2579999988 9999999999999876 35679999999
Q ss_pred ccCCCCCCceeeeEEEeCcccccCCCCC-CCceeEEEEEeCC--CCCCccEEEEEEEEc
Q 021710 94 SKLSETPKPLVGSVKFPLAHLVDSDSSE-PTQYVRKLEVLRP--SGRPQGKIRVKLVLN 149 (308)
Q Consensus 94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~-~~~~~~~~~L~~~--sg~~~G~L~v~v~~~ 149 (308)
++ ...++++||++.|+|.++....... ......||+|+.. .++..|+|+|++.|.
T Consensus 76 ~~-~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 76 EN-RLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CC-CCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 98 3568899999999999998654321 1134689999864 456799999999873
No 15
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.81 E-value=7.1e-19 Score=144.11 Aligned_cols=118 Identities=18% Similarity=0.347 Sum_probs=98.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC-CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCC
Q 021710 21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDP-AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSET 99 (308)
Q Consensus 21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~-~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~ 99 (308)
|.|+|++|++|.. ..+ .+||||++.++. ..+.+|+++++ +.||+|||+|.|.+.. ....|.|+|||++. ..
T Consensus 1 l~v~v~~A~~L~~--~~g--~~dpyv~v~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~--~~~~l~~~v~d~~~-~~ 72 (126)
T cd08678 1 LLVKNIKANGLSE--AAG--SSNPYCVLEMDEPPQKYQSSTQKN-TSNPFWDEHFLFELSP--NSKELLFEVYDNGK-KS 72 (126)
T ss_pred CEEEEEEecCCCC--CCC--CcCCEEEEEECCCCcEEEeEEEec-CCCCccCceEEEEeCC--CCCEEEEEEEECCC-CC
Confidence 6799999999987 334 599999999974 35789999998 8999999999999965 35689999999983 56
Q ss_pred CCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC---CCCCccEEEEEEEEccC
Q 021710 100 PKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP---SGRPQGKIRVKLVLNGR 151 (308)
Q Consensus 100 ~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~---sg~~~G~L~v~v~~~~~ 151 (308)
++++||++.|+|++|..... ...||+|... +.+..|+|.|++.|.+.
T Consensus 73 ~~~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 73 DSKFLGLAIVPFDELRKNPS-----GRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred CCceEEEEEEeHHHhccCCc-----eeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 79999999999999987543 2579999754 24569999999999875
No 16
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.81 E-value=5.6e-19 Score=144.31 Aligned_cols=122 Identities=19% Similarity=0.331 Sum_probs=100.4
Q ss_pred cEEEEEEEEeecCCCCCC--CCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccC
Q 021710 19 HDLEITIICAKHLKNVNW--RNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKL 96 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~--~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~ 96 (308)
+.|+|+|++|++|...+. .+ .+||||++.+.. .+.+|+++++ +.||+|||+|.|.+... ....|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~--~~dPyv~v~~~~-~~~kT~~~~~-t~~P~Wne~f~~~~~~~-~~~~l~i~v~d~~~ 75 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKG--KSDPYAILSVGA-QRFKTQTIPN-TLNPKWNYWCEFPIFSA-QNQLLKLILWDKDR 75 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCC--CcCCeEEEEECC-EEEecceecC-CcCCccCCcEEEEecCC-CCCEEEEEEEECCC
Confidence 579999999999998877 55 499999999975 7899999998 99999999999999763 46789999999983
Q ss_pred CCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC----CCCccEEEEEEEE
Q 021710 97 SETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS----GRPQGKIRVKLVL 148 (308)
Q Consensus 97 ~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s----g~~~G~L~v~v~~ 148 (308)
...+++||++.|+|.++....... ....||.|.+.+ ....|+|+|++.|
T Consensus 76 -~~~~~~lG~~~i~l~~~~~~~~~~--~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 76 -FAGKDYLGEFDIALEEVFADGKTG--QSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred -CCCCCcceEEEEEHHHhhcccccC--ccceeEEccCcccCccccccceEEEEEEC
Confidence 568899999999999998532221 346899997552 2369999999875
No 17
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.81 E-value=8.8e-19 Score=143.83 Aligned_cols=118 Identities=17% Similarity=0.293 Sum_probs=96.2
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710 19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE 98 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~ 98 (308)
..|+|+|++|++|+..+ .+||||+|.++...+.+|++ ++ +.||.|||+|.|.+... ....|+|.|||++ ..
T Consensus 4 ~~L~V~Vi~A~~L~~~~-----~~DPYv~v~l~~~~~~kT~v-~~-~~nP~WnE~f~f~~~~~-~~~~l~v~v~d~~-~~ 74 (126)
T cd08400 4 RSLQLNVLEAHKLPVKH-----VPHPYCVISLNEVKVARTKV-RE-GPNPVWSEEFVFDDLPP-DVNSFTISLSNKA-KR 74 (126)
T ss_pred eEEEEEEEEeeCCCCCC-----CCCeeEEEEECCEeEEEeec-CC-CCCCccCCEEEEecCCC-CcCEEEEEEEECC-CC
Confidence 57999999999998642 48999999998756678987 44 78999999999986543 2357899999988 35
Q ss_pred CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC---CCCccEEEEEEEEcc
Q 021710 99 TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS---GRPQGKIRVKLVLNG 150 (308)
Q Consensus 99 ~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s---g~~~G~L~v~v~~~~ 150 (308)
.++++||++.|+|.++..+. ....||.|...+ .+..|+|+|+++|.+
T Consensus 75 ~~d~~iG~v~i~l~~l~~~~-----~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 75 SKDSEIAEVTVQLSKLQNGQ-----ETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCCCeEEEEEEEHhHccCCC-----cccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 78999999999999987743 235899998653 345799999999976
No 18
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.81 E-value=7.1e-19 Score=141.64 Aligned_cols=115 Identities=19% Similarity=0.354 Sum_probs=98.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCC
Q 021710 20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSET 99 (308)
Q Consensus 20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~ 99 (308)
+|+|+|++|++|+..+..+ .+||||++.+.. .+.+|+++++ +.||.|||+|.|.+... ....|.|+|||++. ..
T Consensus 1 ~~~V~v~~a~~L~~~~~~~--~~dPyv~v~~~~-~~~kT~v~~~-t~nP~Wne~f~f~~~~~-~~~~l~v~v~d~~~-~~ 74 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNG--LSDPYVKFRLGN-EKYKSKVCSK-TLNPQWLEQFDLHLFDD-QSQILEIEVWDKDT-GK 74 (116)
T ss_pred CEEEEEEEEECCCCCCCCC--CCCcEEEEEECC-EeEecccccC-CCCCceeEEEEEEecCC-CCCEEEEEEEECCC-CC
Confidence 4789999999999988765 499999999975 7899999998 99999999999998764 46789999999983 56
Q ss_pred CCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEc
Q 021710 100 PKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLN 149 (308)
Q Consensus 100 ~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~ 149 (308)
++++||++.++|+++..+. ....|++|... .|+|++.+.++
T Consensus 75 ~~~~iG~~~~~l~~l~~~~-----~~~~w~~L~~~----~G~~~~~~~~~ 115 (116)
T cd08376 75 KDEFIGRCEIDLSALPREQ-----THSLELELEDG----EGSLLLLLTLT 115 (116)
T ss_pred CCCeEEEEEEeHHHCCCCC-----ceEEEEEccCC----CcEEEEEEEec
Confidence 8999999999999987643 34689999632 59999998875
No 19
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.81 E-value=7.8e-19 Score=143.02 Aligned_cols=117 Identities=22% Similarity=0.378 Sum_probs=97.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCC
Q 021710 20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSET 99 (308)
Q Consensus 20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~ 99 (308)
.|+|+|++|++|...+..+ .+||||++.+.. .+.+|+++++ +.||+|||+|.|.+... ....|.|+|||++ ...
T Consensus 1 ~L~v~vi~a~~L~~~d~~~--~~DPyv~v~~~~-~~~kT~v~~~-t~nP~Wne~f~f~~~~~-~~~~l~~~v~d~~-~~~ 74 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNG--TSDPFVRVFYNG-QTLETSVVKK-SCYPRWNEVFEFELMEG-ADSPLSVEVWDWD-LVS 74 (123)
T ss_pred CEEEEEEEeeCCCCCCCCC--CcCceEEEEECC-EEEeceeecC-CCCCccCcEEEEEcCCC-CCCEEEEEEEECC-CCC
Confidence 3899999999999888765 499999999975 7789999998 89999999999999764 3678999999988 356
Q ss_pred CCceeeeEEEeCcccccCCCCCCCceeEEEEEeC------CCCCCccEEEEEEE
Q 021710 100 PKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR------PSGRPQGKIRVKLV 147 (308)
Q Consensus 100 ~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~------~sg~~~G~L~v~v~ 147 (308)
.+++||.+.++|.++..... ...||.|.. .+++..|.|+|.|+
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~-----~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 75 KNDFLGKVVFSIQTLQQAKQ-----EEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred CCcEeEEEEEEHHHcccCCC-----CCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 78999999999999976432 257999975 24556899998873
No 20
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.81 E-value=7.4e-19 Score=142.45 Aligned_cols=115 Identities=19% Similarity=0.349 Sum_probs=96.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710 21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE 98 (308)
Q Consensus 21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~ 98 (308)
|+|+|++|++|+..+..+. +||||++.+.. ..+.+|+++++ +.||+|||+|.|.+... ....|.|+|||++. .
T Consensus 2 L~V~vi~a~~L~~~~~~~~--~Dpyv~v~~~~~~~~~~kT~vv~~-t~nP~Wne~f~f~i~~~-~~~~l~v~v~d~d~-~ 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLST--PDCYVELWLPTASDEKKRTKTIKN-SINPVWNETFEFRIQSQ-VKNVLELTVMDEDY-V 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCC--CCcEEEEEEcCCCCccCccceecC-CCCCccceEEEEEeCcc-cCCEEEEEEEECCC-C
Confidence 7899999999999887654 99999999964 36789999998 89999999999998764 35679999999984 4
Q ss_pred CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEc
Q 021710 99 TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLN 149 (308)
Q Consensus 99 ~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~ 149 (308)
.+++||++.++|+++..+. ....|++|.. +..|+|+|+|.+.
T Consensus 77 -~~~~iG~~~~~l~~l~~g~-----~~~~~~~L~~---~~~g~l~~~~~~~ 118 (119)
T cd04036 77 -MDDHLGTVLFDVSKLKLGE-----KVRVTFSLNP---QGKEELEVEFLLE 118 (119)
T ss_pred -CCcccEEEEEEHHHCCCCC-----cEEEEEECCC---CCCceEEEEEEee
Confidence 8899999999999987643 4568999953 3589999998763
No 21
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.81 E-value=1e-18 Score=141.14 Aligned_cols=116 Identities=22% Similarity=0.377 Sum_probs=98.6
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710 19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE 98 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~ 98 (308)
+.|+|+|++|++|+..+..+. +||||++.+.. .+.+|+++++ +.||.|||+|.|.+.. ....|.|+|||++. .
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~--~dPyv~v~~~~-~~~~T~~~~~-t~nP~W~e~f~~~~~~--~~~~l~~~v~d~~~-~ 73 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGK--SDPFCVLELVN-ARLQTHTIYK-TLNPEWNKIFTFPIKD--IHDVLEVTVYDEDK-D 73 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCC--CCcEEEEEECC-EeeecceecC-CcCCccCcEEEEEecC--cCCEEEEEEEECCC-C
Confidence 579999999999998887764 99999999986 6789999998 8999999999999875 35789999999983 5
Q ss_pred CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC--CCCccEEEEEEEE
Q 021710 99 TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS--GRPQGKIRVKLVL 148 (308)
Q Consensus 99 ~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s--g~~~G~L~v~v~~ 148 (308)
..+++||++.++|.++..+ ...|+.|.+.. ++.+|+|.|++.|
T Consensus 74 ~~~~~iG~~~~~l~~~~~~-------~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 74 KKPEFLGKVAIPLLSIKNG-------ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred CCCceeeEEEEEHHHCCCC-------CceEEECcccCCCCceeeEEEEEEEe
Confidence 6889999999999998643 24799998653 3469999999987
No 22
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.80 E-value=1.1e-18 Score=142.08 Aligned_cols=118 Identities=18% Similarity=0.314 Sum_probs=98.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCCC
Q 021710 21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETP 100 (308)
Q Consensus 21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~ 100 (308)
|.|+|++|++|+..+..+. +||||++.++...+.+|+++++ +.||+|||.|.|.+.. ....|.|+|||++ ....
T Consensus 2 l~v~vi~a~~L~~~d~~g~--~DPYv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~--~~~~l~v~v~d~~-~~~~ 75 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGS--SDPYCIVKVDNEVIIRTATVWK-TLNPFWGEEYTVHLPP--GFHTVSFYVLDED-TLSR 75 (121)
T ss_pred EEEEEEEeeCCcCCCCCCC--CCceEEEEECCEeeeeeeeEcC-CCCCcccceEEEeeCC--CCCEEEEEEEECC-CCCC
Confidence 7899999999999988764 9999999998655679999998 8999999999999875 3578999999998 3568
Q ss_pred CceeeeEEEeCcccccCCCCCCCceeEEEEEeC--CCCCCccEEEEEEEE
Q 021710 101 KPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR--PSGRPQGKIRVKLVL 148 (308)
Q Consensus 101 d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~--~sg~~~G~L~v~v~~ 148 (308)
+++||++.+++.++..... ....|+.|+. ..++..|+|+|++++
T Consensus 76 d~~iG~~~~~~~~~~~~~~----~~~~W~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd04054 76 DDVIGKVSLTREVISAHPR----GIDGWMNLTEVDPDEEVQGEIHLELSV 121 (121)
T ss_pred CCEEEEEEEcHHHhccCCC----CCCcEEECeeeCCCCccccEEEEEEEC
Confidence 9999999999998865322 2358999964 345568999998763
No 23
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.80 E-value=1.5e-18 Score=142.27 Aligned_cols=119 Identities=16% Similarity=0.278 Sum_probs=99.0
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS 97 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~ 97 (308)
..+|+|+|++|++|+..+..+. +||||++++.. .+.+|+++++ +.||+|||+|.|.+.. ....|.|+|||++.
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~--~dPyv~v~~~~-~~~kT~v~~~-t~nP~Wne~f~f~~~~--~~~~l~i~V~d~~~- 74 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGG--ADPYVIIKCEG-ESVRSPVQKD-TLSPEFDTQAIFYRKK--PRSPIKIQVWNSNL- 74 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCC--cCccEEEEECC-EEEEeCccCC-CCCCcccceEEEEecC--CCCEEEEEEEECCC-
Confidence 4689999999999999887764 99999999986 6899999998 8999999999998875 46789999999873
Q ss_pred CCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeC----CCCCCccEEEEEEEEccC
Q 021710 98 ETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR----PSGRPQGKIRVKLVLNGR 151 (308)
Q Consensus 98 ~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~----~sg~~~G~L~v~v~~~~~ 151 (308)
..|++||.+++++.++.. ....+|+|.. .+++..|+|.|++.+.+.
T Consensus 75 -~~d~~lG~~~~~l~~~~~-------~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 75 -LCDEFLGQATLSADPNDS-------QTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred -CCCCceEEEEEecccCCC-------cCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 368999999999987532 2246677742 567789999999988754
No 24
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.80 E-value=1.1e-18 Score=142.56 Aligned_cols=116 Identities=23% Similarity=0.417 Sum_probs=95.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCC
Q 021710 20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSET 99 (308)
Q Consensus 20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~ 99 (308)
.|+|+|++|++|...+..+. +||||++++++..+.+|+++++ +.||.|||+|.|.+.. ...|.|+|||++. ..
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~--~dpyv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~---~~~l~i~V~d~~~-~~ 73 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRL--PDPFAVITVDGGQTHSTDVAKK-TLDPKWNEHFDLTVGP---SSIITIQVFDQKK-FK 73 (123)
T ss_pred CeEEEEEEecCCCccCCCCC--CCcEEEEEECCccceEccEEcC-CCCCcccceEEEEeCC---CCEEEEEEEECCC-CC
Confidence 48999999999998887764 9999999997667899999988 8999999999999965 5789999999884 33
Q ss_pred C--CceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC----CCCccEEEEEE
Q 021710 100 P--KPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS----GRPQGKIRVKL 146 (308)
Q Consensus 100 ~--d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s----g~~~G~L~v~v 146 (308)
. |++||++.|+|++|...... ...|++|+... ++..|+|.+++
T Consensus 74 ~~~d~~lG~~~i~l~~l~~~~~~----~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 74 KKDQGFLGCVRIRANAVLPLKDT----GYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCCceEeEEEEEHHHccccCCC----ccceeEeecCCCCCCceEeeEEEEEe
Confidence 2 68999999999999865432 24699996543 45589998876
No 25
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.79 E-value=2.6e-18 Score=138.88 Aligned_cols=116 Identities=20% Similarity=0.321 Sum_probs=97.1
Q ss_pred cEEEEEEEEeecCCCCCCC-----CCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEe
Q 021710 19 HDLEITIICAKHLKNVNWR-----NGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFH 93 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~-----~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d 93 (308)
+.|+|+|++|++|...+.. .+ .+||||++.+.. .+.+|+++++ +.||+|||+|.|.+... ....|.|+|||
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g-~~dPyv~v~~~~-~~~kT~~~~~-t~~P~W~e~f~~~v~~~-~~~~l~i~v~d 76 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKG-KSDPYVIVRVGA-QTFKSKVIKE-NLNPKWNEVYEAVVDEV-PGQELEIELFD 76 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCC-CcCCEEEEEECC-EeEEccccCC-CCCCcccceEEEEeCCC-CCCEEEEEEEe
Confidence 4799999999999987642 12 589999999986 8899999998 99999999999998753 46789999999
Q ss_pred ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEE
Q 021710 94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVL 148 (308)
Q Consensus 94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~ 148 (308)
++. . .+++||.+.++|+++.... ....||+|.+ ..+|+|+++++|
T Consensus 77 ~~~-~-~~~~iG~~~i~l~~l~~~~-----~~~~w~~L~~---~~~G~~~~~~~~ 121 (121)
T cd08391 77 EDP-D-KDDFLGRLSIDLGSVEKKG-----FIDEWLPLED---VKSGRLHLKLEW 121 (121)
T ss_pred cCC-C-CCCcEEEEEEEHHHhcccC-----ccceEEECcC---CCCceEEEEEeC
Confidence 984 4 8899999999999998643 2359999963 368999999875
No 26
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.79 E-value=4.3e-18 Score=140.51 Aligned_cols=119 Identities=31% Similarity=0.516 Sum_probs=98.2
Q ss_pred cEEEEEEEEeecCCCCCCCC--------CCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEE
Q 021710 19 HDLEITIICAKHLKNVNWRN--------GGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLE 90 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~--------~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~ 90 (308)
+.|+|+|++|++|+..+... .+.+||||+++++.....+|+++++ +.||.|||+|.|.+.+ ...|.|+
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~~---~~~l~~~ 79 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPK-TNSPVWNEEFTTEVHN---GRNLELT 79 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCC-CCCCCcceeEEEEcCC---CCEEEEE
Confidence 67999999999999877621 0158999999998766689999888 9999999999999974 5789999
Q ss_pred EEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEcc
Q 021710 91 IFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNG 150 (308)
Q Consensus 91 V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~ 150 (308)
|||++. ...+++||++.|+|+++...... ....|++|. ++|+|+|++.+..
T Consensus 80 v~d~~~-~~~~~~iG~~~i~l~~l~~~~~~---~~~~w~~L~-----~~G~l~l~~~~~~ 130 (132)
T cd04014 80 VFHDAA-IGPDDFVANCTISFEDLIQRGSG---SFDLWVDLE-----PQGKLHVKIELKG 130 (132)
T ss_pred EEeCCC-CCCCceEEEEEEEhHHhcccCCC---cccEEEEcc-----CCcEEEEEEEEec
Confidence 999873 56789999999999999874111 346899994 5799999999864
No 27
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.78 E-value=7.1e-18 Score=137.72 Aligned_cols=122 Identities=19% Similarity=0.272 Sum_probs=99.3
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC--ceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccC
Q 021710 19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA--YRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKL 96 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~--~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~ 96 (308)
+.|+|+|++|++|+..+..+ .+||||++.+... .+.+|+++++ +.||+|||+|.|.+... ....|.|+|||++.
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~--~~Dpyv~v~~~~~~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~-~~~~L~i~v~d~d~ 76 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNG--LSDPYVTLVDTNGKRRIAKTRTIYD-TLNPRWDEEFELEVPAG-EPLWISATVWDRSF 76 (126)
T ss_pred CEEEEEEEEeECCCCCCCCC--CCCceEEEEECCCCeeeecccEecC-CCCCcccceEEEEcCCC-CCCEEEEEEEECCC
Confidence 36899999999999988765 4999999998642 4689999988 89999999999999874 46789999999984
Q ss_pred CCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEccCC
Q 021710 97 SETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGRP 152 (308)
Q Consensus 97 ~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~~~ 152 (308)
..++++||++.++|.++....+.. ....|+.|. .+|+|++++.+...+
T Consensus 77 -~~~~~~iG~~~i~l~~~~~~~~~~--~~~~w~~l~-----~~g~i~l~~~~~~~~ 124 (126)
T cd04043 77 -VGKHDLCGRASLKLDPKRFGDDGL--PREIWLDLD-----TQGRLLLRVSMEGER 124 (126)
T ss_pred -CCCCceEEEEEEecCHHHcCCCCC--CceEEEEcC-----CCCeEEEEEEEeeec
Confidence 558899999999999875533111 346899994 379999999987643
No 28
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.78 E-value=2.4e-18 Score=140.29 Aligned_cols=105 Identities=18% Similarity=0.241 Sum_probs=86.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC------CceEEEEeecCCCCCCccccEEEEeeeCC--CCCceEEEEE
Q 021710 20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP------AYRLATQSDDSGSTRPVWNERFTLPITHS--VRESVLTLEI 91 (308)
Q Consensus 20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~------~~k~kT~v~k~gt~nP~WnE~f~f~l~~~--~~~~~L~l~V 91 (308)
.|+|+|++|++|+..+. + .+||||+|++.. .++.+|+++++ +.||+|||+|.|.+... +....|.|.|
T Consensus 1 kL~V~Vi~A~~L~~~d~-g--~~DPYVkV~l~g~~~~~k~~k~kTkv~~~-tlnPvwNE~f~F~v~~~~~~~~~~L~~~V 76 (120)
T cd08395 1 KVTVKVVAANDLKWQTT-G--MFRPFVEVNLIGPHLSDKKRKFATKSKNN-NWSPKYNETFQFILGNEDDPESYELHICV 76 (120)
T ss_pred CEEEEEEECcCCCcccC-C--CCCCEEEEEEecCCCcccccEeeeEEecC-CCCCccCcEEEEEeeCcCCCceeEEEEEE
Confidence 48999999999988763 4 599999999831 24678999977 99999999999999753 3456799999
Q ss_pred EeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC
Q 021710 92 FHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP 134 (308)
Q Consensus 92 ~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~ 134 (308)
||++ ...++++||++.|+|+++.... ....|++|.++
T Consensus 77 ~D~d-~~~~dd~IG~~~l~l~~~~~~~-----~~~~w~~L~~~ 113 (120)
T cd08395 77 KDYC-FARDDRLVGVTVLQLRDIAQAG-----SCACWLPLGRR 113 (120)
T ss_pred EEec-ccCCCCEEEEEEEEHHHCcCCC-----cEEEEEECcCc
Confidence 9988 4567899999999999998654 34689999654
No 29
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.77 E-value=2.3e-18 Score=140.68 Aligned_cols=104 Identities=22% Similarity=0.341 Sum_probs=87.4
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEee-e-CCCCCceEEEEE
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPI-T-HSVRESVLTLEI 91 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l-~-~~~~~~~L~l~V 91 (308)
.+.|+|+|++|++|...+ .+ .+||||++++.+ ..+.+|+++++ +.||+|||+|.|.+ . ..+.+..|.|+|
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~--~~DpyVkv~l~~~~~~~~~~kT~v~~~-~~nP~wnE~F~f~~~~~~~l~~~~L~~~V 87 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GS--DPDPYVKTYLLPDPQKTTKRKTKVVRK-TRNPTFNEMLVYDGLPVEDLQQRVLQVSV 87 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CC--CCCCEEEEEEeeCCccCCceeCCccCC-CCCCCcccEEEEecCChHHhCCCEEEEEE
Confidence 478999999999999888 54 599999999964 35789999998 89999999999997 3 234567899999
Q ss_pred EeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEE
Q 021710 92 FHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEV 131 (308)
Q Consensus 92 ~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L 131 (308)
||++ ...++++||++.|+|+++.... ....||.|
T Consensus 88 ~d~d-~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L 121 (122)
T cd08381 88 WSHD-SLVENEFLGGVCIPLKKLDLSQ-----ETEKWYPL 121 (122)
T ss_pred EeCC-CCcCCcEEEEEEEeccccccCC-----CccceEEC
Confidence 9998 4568999999999999998643 23589987
No 30
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.77 E-value=9.3e-18 Score=142.43 Aligned_cols=126 Identities=22% Similarity=0.307 Sum_probs=98.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCcEEEEEE----cCCceEEEEeecCCCCCCccccEEEEeeeCC-------CCCceEE
Q 021710 20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYV----DPAYRLATQSDDSGSTRPVWNERFTLPITHS-------VRESVLT 88 (308)
Q Consensus 20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l----~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-------~~~~~L~ 88 (308)
.++|+|+.|++++.......+.+||||++++ +...+.||+++++ |.||+|||+|.|.+... +....|.
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~-TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~ 81 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKD-TNSPEYNESFKLNINRKHRSFQRVFKRHGLK 81 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccC-CCCCcccceEEEEeccccchhhhhccCCcEE
Confidence 4678888888864332221126999999997 3346999999999 99999999999999653 2356799
Q ss_pred EEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEccC
Q 021710 89 LEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGR 151 (308)
Q Consensus 89 l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~~ 151 (308)
|+|||.+.....|++||++.|+|..+...... ..|++|++......|+|+|+|++++.
T Consensus 82 ~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~-----~~~~~L~~~~k~~Gg~l~v~ir~r~p 139 (155)
T cd08690 82 FEVYHKGGFLRSDKLLGTAQVKLEPLETKCEI-----HESVDLMDGRKATGGKLEVKVRLREP 139 (155)
T ss_pred EEEEeCCCcccCCCeeEEEEEEcccccccCcc-----eEEEEhhhCCCCcCCEEEEEEEecCC
Confidence 99999984234799999999999999765432 46999986555568999999999875
No 31
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.77 E-value=3e-18 Score=138.83 Aligned_cols=96 Identities=17% Similarity=0.258 Sum_probs=82.0
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC---CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710 17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP---AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF 92 (308)
Q Consensus 17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~---~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~ 92 (308)
..+.|+|+|++|++|+ . .+ .+||||++++.+ ..+++|++.++ |.||+|||+|.|.+... +.+.+|.|.||
T Consensus 12 ~~~~L~V~vikA~~L~-~--~g--~sDPYVKv~L~~~~k~~k~kT~v~rk-tlnPvfnE~f~F~v~~~~l~~~tL~~~V~ 85 (118)
T cd08677 12 QKAELHVNILEAENIS-V--DA--GCECYISGCVSVSEGQKEAQTALKKL-ALHTQWEEELVFPLPEEESLDGTLTLTLR 85 (118)
T ss_pred cCCEEEEEEEEecCCC-C--CC--CCCeEEEEEEcCCcCccEEEcceecC-CCCCccccEEEEeCCHHHhCCcEEEEEEE
Confidence 3589999999999998 2 23 499999999964 25889999999 99999999999998763 56788999999
Q ss_pred eccCCCCCCceeeeEEEeCcccccCCC
Q 021710 93 HSKLSETPKPLVGSVKFPLAHLVDSDS 119 (308)
Q Consensus 93 d~~~~~~~d~lLG~~~ipL~~L~~~~~ 119 (308)
|.| +.+++++||++.++|+++....+
T Consensus 86 d~D-rfs~~d~IG~v~l~l~~~~~~~~ 111 (118)
T cd08677 86 CCD-RFSRHSTLGELRLKLADVSMMLG 111 (118)
T ss_pred eCC-CCCCCceEEEEEEccccccCCcc
Confidence 999 57899999999999998755443
No 32
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.77 E-value=1.5e-17 Score=137.95 Aligned_cols=125 Identities=14% Similarity=0.209 Sum_probs=98.2
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCC------C--CCceEEEE
Q 021710 19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHS------V--RESVLTLE 90 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~------~--~~~~L~l~ 90 (308)
+.|+|+|++|++|...+..+. +||||++.+.. .+.+|+++++ +.||+|||.|.|.+... . ....|.|+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~--~dpyv~v~~~~-~~~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~ 76 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGL--SDPFARVSFLN-QSQETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVE 76 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCC--CCCEEEEEECC-eeeEeeeEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEEEEE
Confidence 479999999999998887764 99999999975 7889999998 99999999999985321 0 13579999
Q ss_pred EEeccCCCCCCceeeeEEE-eCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEccC
Q 021710 91 IFHSKLSETPKPLVGSVKF-PLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGR 151 (308)
Q Consensus 91 V~d~~~~~~~d~lLG~~~i-pL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~~ 151 (308)
|||++. ..+|++||++.+ ++..+...... .....|+.|. ..++.+|+|.|++.+.+.
T Consensus 77 V~d~d~-~~~d~~iG~~~i~~~~~~~~~~~~--~~~~~W~~L~-~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 77 LFDQDS-VGKDEFLGRSVAKPLVKLDLEEDF--PPKLQWFPIY-KGGQSAGELLAAFELIEV 134 (135)
T ss_pred EEeCcC-CCCCccceEEEeeeeeecccCCCC--CCCceEEEee-cCCCchhheeEEeEEEEe
Confidence 999983 568899999987 54444432111 1457999997 456689999999998753
No 33
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.77 E-value=2.1e-18 Score=145.72 Aligned_cols=94 Identities=20% Similarity=0.402 Sum_probs=85.5
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS 97 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~ 97 (308)
.+.|+|+|+++.||..+|+.++ +||||++.+.+ ++.+|+++++ ++||+|||+|+|.+.+ ....|+++|||+|.
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~s--SDPyVVl~lg~-q~lkT~~v~~-n~NPeWNe~ltf~v~d--~~~~lkv~VyD~D~- 77 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGS--SDPYVVLELGN-QKLKTRVVYK-NLNPEWNEELTFTVKD--PNTPLKVTVYDKDT- 77 (168)
T ss_pred ceEEEEEEEeecCeeeeccccC--CCCeEEEEECC-eeeeeeeecC-CCCCcccceEEEEecC--CCceEEEEEEeCCC-
Confidence 3789999999999999998654 99999999997 8999999998 8999999999999998 47889999999994
Q ss_pred CCCCceeeeEEEeCcccccCC
Q 021710 98 ETPKPLVGSVKFPLAHLVDSD 118 (308)
Q Consensus 98 ~~~d~lLG~~~ipL~~L~~~~ 118 (308)
+..|+|||.|.|+|+.++...
T Consensus 78 fs~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 78 FSSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred CCcccccceeeeccHHHHHHh
Confidence 789999999999999998754
No 34
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.77 E-value=4.8e-18 Score=140.06 Aligned_cols=109 Identities=24% Similarity=0.341 Sum_probs=89.6
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC----ceEEEEeecCCCCCCccccEEEEeeeC-CCCCceEEEEEE
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTLPITH-SVRESVLTLEIF 92 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~----~k~kT~v~k~gt~nP~WnE~f~f~l~~-~~~~~~L~l~V~ 92 (308)
.+.|+|+|++|+||...+...+ .+||||++.+.+. .+.||+++++ +.||+|||+|.|.+.. .+.+..|.|.||
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g-~~dpYVkv~llp~~~~~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~l~~~~L~v~V~ 91 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKK-KCHPYVKVCLLPDKSHNSKRKTAVKKG-TVNPVFNETLKYVVEADLLSSRQLQVSVW 91 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCC-CCCeEEEEEEEeCCcccceeecccccC-CCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence 4789999999999998876422 5999999999653 3789999998 9999999999999865 345679999999
Q ss_pred eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEE
Q 021710 93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEV 131 (308)
Q Consensus 93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L 131 (308)
|.+ ...++++||++.|+|.++....... ....||+|
T Consensus 92 ~~~-~~~~~~~lG~~~i~L~~~~~~~~~~--~~~~W~~l 127 (128)
T cd08392 92 HSR-TLKRRVFLGEVLIPLADWDFEDTDS--QRFLWYPL 127 (128)
T ss_pred eCC-CCcCcceEEEEEEEcCCcccCCCCc--cccceEEC
Confidence 988 3568899999999999996543221 45789987
No 35
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.77 E-value=1.3e-17 Score=136.67 Aligned_cols=115 Identities=20% Similarity=0.304 Sum_probs=97.4
Q ss_pred EEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEEeccCCCCCCce
Q 021710 25 IICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIFHSKLSETPKPL 103 (308)
Q Consensus 25 IisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~d~~~~~~~d~l 103 (308)
|++|++|+. ..+ .+||||++.+.. .+.+|+++++ +.||+|||+|.|.+... .....|.|+|||++. ...+++
T Consensus 2 vi~a~~L~~--~~g--~~Dpyv~v~~~~-~~~kT~v~~~-~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~-~~~d~~ 74 (127)
T cd08373 2 VVSLKNLPG--LKG--KGDRIAKVTFRG-VKKKTRVLEN-ELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK-VGRNRL 74 (127)
T ss_pred eEEeeCCcc--cCC--CCCCEEEEEECC-EeeecceeCC-CcCCcccceEEEEeCCCcCCCCEEEEEEEECCC-CCCCce
Confidence 789999998 444 499999999976 6889999998 89999999999999753 356789999999983 568899
Q ss_pred eeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC-ccEEEEEEEEccC
Q 021710 104 VGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP-QGKIRVKLVLNGR 151 (308)
Q Consensus 104 LG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~-~G~L~v~v~~~~~ 151 (308)
||++.++|+++.... ....|++|.+.+++. .|+|++++.|.+.
T Consensus 75 iG~~~~~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 75 IGSATVSLQDLVSEG-----LLEVTEPLLDSNGRPTGATISLEVSYQPP 118 (127)
T ss_pred EEEEEEEhhHcccCC-----ceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence 999999999998643 346899998776664 7999999999875
No 36
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.77 E-value=9e-18 Score=141.31 Aligned_cols=106 Identities=16% Similarity=0.234 Sum_probs=87.7
Q ss_pred ccEEEEEEEEeecCCCCC-CCCCCCCCcEEEEEEcCC----ceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEE
Q 021710 18 THDLEITIICAKHLKNVN-WRNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIF 92 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~-~~~~~~~dPYv~v~l~~~----~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~ 92 (308)
.+.|+|+|++|+||...+ ..+ .+||||++++.+. .+.||+++++ +.||+|||+|.|.+. +.+..|.|+||
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g--~sDPYVKv~Llp~~~~~~k~KT~v~kk-tlnPvfNE~F~f~v~--l~~~~L~v~V~ 102 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKV--LPAPYVKVYLLEGKKCIAKKKTKIARK-TLDPLYQQQLVFDVS--PTGKTLQVIVW 102 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCC--CcCCeEEEEEECCCccccceeceecCC-CCCCccCCeEEEEEc--CCCCEEEEEEE
Confidence 588999999999998764 333 4899999999653 3889999998 999999999999998 36789999999
Q ss_pred e-ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC
Q 021710 93 H-SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP 134 (308)
Q Consensus 93 d-~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~ 134 (308)
+ ++ ...++++||++.|+|+++.... ....||+|...
T Consensus 103 ~d~~-~~~~~~~iG~~~i~L~~l~~~~-----~~~~Wy~L~~~ 139 (146)
T cd04028 103 GDYG-RMDKKVFMGVAQILLDDLDLSN-----LVIGWYKLFPT 139 (146)
T ss_pred eCCC-CCCCCceEEEEEEEcccccCCC-----CceeEEecCCc
Confidence 5 55 4568899999999999985433 23589999754
No 37
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.76 E-value=6.6e-18 Score=135.18 Aligned_cols=98 Identities=14% Similarity=0.241 Sum_probs=82.8
Q ss_pred cEEEEEEEEeecCCCCCCCC--CCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccC
Q 021710 19 HDLEITIICAKHLKNVNWRN--GGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKL 96 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~--~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~ 96 (308)
++|.|+|++|++|+..+... +..+||||++.+.. .++||+++++ +.||+|||+|.|.+........|.|+|||++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~-~~~kT~v~~~-t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d- 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR-RVFRTSWRRH-TLNPVFNERLAFEVYPHEKNFDIQFKVLDKD- 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC-EeEeeeeecC-CCCCcccceEEEEEeCccCCCEEEEEEEECC-
Confidence 57999999999999876432 11489999999975 7889999999 8999999999999876434568999999998
Q ss_pred CCCCCceeeeEEEeCcccccCCC
Q 021710 97 SETPKPLVGSVKFPLAHLVDSDS 119 (308)
Q Consensus 97 ~~~~d~lLG~~~ipL~~L~~~~~ 119 (308)
..++|++||++.|+|++|+....
T Consensus 78 ~~~~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 78 KFSFNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCCCCcceEEEEEEHHHHHhhCC
Confidence 46789999999999999987654
No 38
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.76 E-value=5.8e-18 Score=142.92 Aligned_cols=117 Identities=17% Similarity=0.276 Sum_probs=91.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC----ceEEEEeecCCCCCCccccEEEEeeeC--------------C
Q 021710 20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTLPITH--------------S 81 (308)
Q Consensus 20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~----~k~kT~v~k~gt~nP~WnE~f~f~l~~--------------~ 81 (308)
.|+|+|++|++|.. ..+ .+||||+|.+... .+.+|+++++ +.||+|||+|.|.+.. .
T Consensus 1 kL~V~Vi~ArnL~~--~~g--~sDPYV~V~l~~~~~k~~~~kT~v~~~-t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~ 75 (148)
T cd04010 1 KLSVRVIECSDLAL--KNG--TCDPYASVTLIYSNKKQDTKRTKVKKK-TNNPQFDEAFYFDVTIDSSPEKKQFEMPEED 75 (148)
T ss_pred CEEEEEEeCcCCCC--CCC--CCCceEEEEEeCCcccCcccCCccEeC-CCCCccceEEEEEEecccccccccccCCccc
Confidence 38999999999987 233 5999999999752 5789999998 9999999999999851 1
Q ss_pred CCCceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCC------------CccEEEEEE
Q 021710 82 VRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGR------------PQGKIRVKL 146 (308)
Q Consensus 82 ~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~------------~~G~L~v~v 146 (308)
+....|.|+|||++. ...++|||++.|+|.+|..... ....||+|...+.+ ..|+|+++|
T Consensus 76 ~~~~~L~i~V~d~~~-~~~ddfLG~v~i~l~~l~~~~~----~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 76 AEKLELRVDLWHASM-GGGDVFLGEVRIPLRGLDLQAG----SHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred ccEEEEEEEEEcCCC-CCCCceeEEEEEecccccccCC----cCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 234679999999984 4689999999999999887511 23589999754322 267888775
No 39
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.76 E-value=1.2e-17 Score=137.07 Aligned_cols=108 Identities=23% Similarity=0.346 Sum_probs=88.6
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEE
Q 021710 17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEI 91 (308)
Q Consensus 17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V 91 (308)
..+.|+|+|++|+||...+...+ .+||||++.+.+ ..+.||+++++ +.||+|||+|.|.+... +.+..|.|+|
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~-~~DpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~l~~~~L~~~V 90 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKK-RSNPYVKTYLLPDKSRQSKRKTSIKRN-TTNPVYNETLKYSISHSQLETRTLQLSV 90 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCC-CCCcEEEEEEEcCCccccceEeeeeeC-CCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 35789999999999987764322 599999999964 24689999988 99999999999998653 4567899999
Q ss_pred EeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710 92 FHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL 132 (308)
Q Consensus 92 ~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~ 132 (308)
||++ ...++++||++.|+|.++..... ...|++|.
T Consensus 91 ~d~~-~~~~~~~lG~~~i~l~~~~~~~~-----~~~w~~l~ 125 (125)
T cd04029 91 WHYD-RFGRNTFLGEVEIPLDSWNFDSQ-----HEECLPLH 125 (125)
T ss_pred EECC-CCCCCcEEEEEEEeCCcccccCC-----cccEEECc
Confidence 9998 46788999999999999976543 35899873
No 40
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.76 E-value=2.8e-17 Score=134.68 Aligned_cols=120 Identities=24% Similarity=0.380 Sum_probs=96.3
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710 19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE 98 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~ 98 (308)
.+|+|+|++|+ |...+..+ .+||||+++++...+.+|+++++ +.||+|||+|.|.+.. ...|.|+|||++ ..
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~--~~dPyv~v~~~~~~~~kT~v~~~-t~~P~Wne~f~~~~~~---~~~l~~~V~d~~-~~ 73 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSF--KPDPYVEVTVDGQPPKKTEVSKK-TSNPKWNEHFTVLVTP---QSTLEFKVWSHH-TL 73 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCC--CCCeEEEEEECCcccEEeeeeCC-CCCCccccEEEEEeCC---CCEEEEEEEeCC-CC
Confidence 47999999999 54444455 49999999998645899999987 8999999999999864 468999999998 45
Q ss_pred CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC---CCCccEEEEEE
Q 021710 99 TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS---GRPQGKIRVKL 146 (308)
Q Consensus 99 ~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s---g~~~G~L~v~v 146 (308)
..+++||++.++|.++.............|++|.+++ +...|+|.+++
T Consensus 74 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 74 KADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 6889999999999999875443322335699998654 35689999876
No 41
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.76 E-value=1.8e-17 Score=133.09 Aligned_cols=114 Identities=24% Similarity=0.436 Sum_probs=96.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCCC
Q 021710 21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETP 100 (308)
Q Consensus 21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~ 100 (308)
|+|+|++|++|...+..+ .+||||++.++.....+|+++++ +.+|+|||+|.|.+... ....|.|+|||++. ..+
T Consensus 1 l~v~vi~a~~L~~~~~~~--~~dpyv~v~~~~~~~~~T~v~~~-~~~P~Wne~f~~~~~~~-~~~~l~~~v~d~~~-~~~ 75 (115)
T cd04040 1 LTVDVISAENLPSADRNG--KSDPFVKFYLNGEKVFKTKTIKK-TLNPVWNESFEVPVPSR-VRAVLKVEVYDWDR-GGK 75 (115)
T ss_pred CEEEEEeeeCCCCCCCCC--CCCCeEEEEECCCcceeeceecC-CCCCcccccEEEEeccC-CCCEEEEEEEeCCC-CCC
Confidence 589999999999888765 49999999998766789999987 99999999999998764 46789999999983 568
Q ss_pred CceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEE
Q 021710 101 KPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRV 144 (308)
Q Consensus 101 d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v 144 (308)
+++||++.+++.++..+. ....|++|....+...|.|.+
T Consensus 76 ~~~iG~~~~~l~~l~~~~-----~~~~~~~L~~~g~~~~~~~~~ 114 (115)
T cd04040 76 DDLLGSAYIDLSDLEPEE-----TTELTLPLDGQGGGKLGAVFL 114 (115)
T ss_pred CCceEEEEEEHHHcCCCC-----cEEEEEECcCCCCccCceEEc
Confidence 899999999999987643 457899998777777888754
No 42
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.75 E-value=9.9e-18 Score=133.04 Aligned_cols=102 Identities=22% Similarity=0.347 Sum_probs=87.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCC
Q 021710 20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSET 99 (308)
Q Consensus 20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~ 99 (308)
.|.|+|++|++|+..+..+ .+||||++.+.. .+.+|+++++ +.||+|||+|.|.+... ....|.|+|||++.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~--~~dpyv~v~~~~-~~~kT~v~~~-t~nP~Wne~f~f~v~~~-~~~~l~v~v~d~~~--- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTK--EPSPYVELTVGK-TTQKSKVKER-TNNPVWEEGFTFLVRNP-ENQELEIEVKDDKT--- 72 (105)
T ss_pred CEEEEEeeecCCCCcccCC--CCCcEEEEEECC-EEEeCccccC-CCCCcccceEEEEeCCC-CCCEEEEEEEECCC---
Confidence 3899999999999887655 599999999987 8999999988 89999999999999864 45689999999872
Q ss_pred CCceeeeEEEeCcccccCCCCCCCceeEEEEEeC
Q 021710 100 PKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR 133 (308)
Q Consensus 100 ~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~ 133 (308)
+++||++.|+|.+|...... ....||+|..
T Consensus 73 -~~~iG~~~i~l~~l~~~~~~---~~~~w~~L~~ 102 (105)
T cd04050 73 -GKSLGSLTLPLSELLKEPDL---TLDQPFPLDN 102 (105)
T ss_pred -CCccEEEEEEHHHhhccccc---eeeeeEecCC
Confidence 78999999999999875421 4579999963
No 43
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.75 E-value=1e-17 Score=134.08 Aligned_cols=107 Identities=18% Similarity=0.324 Sum_probs=88.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCcc-ccEEEEeeeCC-CCCceEEEEEEeccCCC
Q 021710 21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVW-NERFTLPITHS-VRESVLTLEIFHSKLSE 98 (308)
Q Consensus 21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~W-nE~f~f~l~~~-~~~~~L~l~V~d~~~~~ 98 (308)
|+|+|++|++|+..+...+ .+||||++.+.. .+.||+++++ +.||+| ||+|.|.+... +.+..|.|+|||++ ..
T Consensus 1 l~V~v~~a~~L~~~d~~~~-~~Dpyv~v~~~~-~~~kT~v~~~-~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d-~~ 76 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSD-LTDAFVEVKFGS-TTYKTDVVKK-SLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHD-TY 76 (110)
T ss_pred CEEEEEEEECCCccccCCC-CCCceEEEEECC-eeEecceecC-CCCCcccCcEEEEEcChHHcCCCeEEEEEEeCC-CC
Confidence 6899999999988774333 599999999987 8999999998 899999 99999998763 34578999999998 35
Q ss_pred CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeC
Q 021710 99 TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR 133 (308)
Q Consensus 99 ~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~ 133 (308)
.++++||++.++|.++....... ....||+|.+
T Consensus 77 ~~~~~iG~~~~~l~~l~~~~~~~--~~~~w~~l~~ 109 (110)
T cd08688 77 SANDAIGKVYIDLNPLLLKDSVS--QISGWFPIYD 109 (110)
T ss_pred CCCCceEEEEEeHHHhcccCCcc--ccCCeEEccc
Confidence 68899999999999998743221 3468999964
No 44
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.75 E-value=7.9e-18 Score=136.99 Aligned_cols=106 Identities=18% Similarity=0.351 Sum_probs=85.4
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEE
Q 021710 17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIF 92 (308)
Q Consensus 17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~ 92 (308)
..+.|+|+|++|+||...+ .+ .+||||++++.+ ..+.||+++++ +.||+|||+|.|.+........|.|+||
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g--~~dpYVkv~l~p~~~~~~~~kT~v~~~-t~~P~~nE~F~f~v~~~~~~~~l~v~V~ 85 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SG--TCNSYVKISLSPDKEVRFRQKTSTVPD-SANPLFHETFSFDVNERDYQKRLLVTVW 85 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CC--CCCeeEEEEEEeCCCCcceEeCccccC-CCCCccccEEEEEcChHHhCCEEEEEEE
Confidence 3578999999999998887 44 499999999975 24779999988 8999999999999875322357889999
Q ss_pred eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEE
Q 021710 93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEV 131 (308)
Q Consensus 93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L 131 (308)
|++....++++||.+.|+|.++..+. ....||.|
T Consensus 86 ~~~~~~~~~~~lG~~~i~l~~~~~~~-----~~~~Wy~l 119 (119)
T cd08685 86 NKLSKSRDSGLLGCMSFGVKSIVNQK-----EISGWYYL 119 (119)
T ss_pred CCCCCcCCCEEEEEEEecHHHhccCc-----cccceEeC
Confidence 98842235789999999999997543 23589976
No 45
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.75 E-value=2.2e-17 Score=134.70 Aligned_cols=107 Identities=16% Similarity=0.279 Sum_probs=90.1
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEEe
Q 021710 17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIFH 93 (308)
Q Consensus 17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~d 93 (308)
..+.|.|+|++|++|...+..+ .+||||++.+.+ ..+.+|+++++ +.||+|||+|.|.+... +....|.|+|||
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g--~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l~~~~l~i~V~d 90 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSG--TADPYCKVRLLPDRSNTKQSKIHKK-TLNPEFDESFVFEVPPQELPKRTLEVLLYD 90 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCC--CCCCeEEEEEecCCCCcEeCceEcC-CCCCCcccEEEEeCCHHHhCCCEEEEEEEE
Confidence 3579999999999999888765 499999999943 46789999998 99999999999998753 345789999999
Q ss_pred ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710 94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL 132 (308)
Q Consensus 94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~ 132 (308)
++ ...++++||++.|+|+++.... ....||.|.
T Consensus 91 ~~-~~~~~~~iG~~~i~l~~~~~~~-----~~~~W~~l~ 123 (124)
T cd08387 91 FD-QFSRDECIGVVELPLAEVDLSE-----KLDLWRKIQ 123 (124)
T ss_pred CC-CCCCCceeEEEEEecccccCCC-----CcceEEECc
Confidence 98 4568999999999999998654 236899985
No 46
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.75 E-value=2.9e-17 Score=131.59 Aligned_cols=106 Identities=19% Similarity=0.342 Sum_probs=88.3
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCC---CCCceEEEEEEec
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHS---VRESVLTLEIFHS 94 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~---~~~~~L~l~V~d~ 94 (308)
.+.|+|+|++|++|. .+ .+||||++++++ .+.+|+++++ +.||+|||+|.|.+... +.+..|.|+|||.
T Consensus 3 ~~~l~V~v~~a~~L~----~~--~~dpyv~v~~~~-~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~ 74 (111)
T cd04011 3 DFQVRVRVIEARQLV----GG--NIDPVVKVEVGG-QKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDS 74 (111)
T ss_pred cEEEEEEEEEcccCC----CC--CCCCEEEEEECC-EeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcC
Confidence 478999999999998 23 499999999996 7889999988 89999999999997542 2356899999998
Q ss_pred cCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC
Q 021710 95 KLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP 134 (308)
Q Consensus 95 ~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~ 134 (308)
+. ..++++||++.|+|+++....... ....|++|.++
T Consensus 75 ~~-~~~~~~iG~~~i~l~~v~~~~~~~--~~~~w~~L~~~ 111 (111)
T cd04011 75 RS-LRSDTLIGSFKLDVGTVYDQPDHA--FLRKWLLLTDP 111 (111)
T ss_pred cc-cccCCccEEEEECCccccCCCCCc--ceEEEEEeeCc
Confidence 83 567899999999999998764443 45789999764
No 47
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.74 E-value=2.9e-17 Score=134.84 Aligned_cols=114 Identities=19% Similarity=0.373 Sum_probs=93.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC--
Q 021710 20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS-- 97 (308)
Q Consensus 20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~-- 97 (308)
.|+|+|++|++|...+..+. +||||++.+.. .+.+|+++++ +.||+|||+|.|.+... ...|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~--~DPyv~v~~~~-~~~kT~~v~~-t~~P~Wne~f~f~~~~~--~~~l~i~v~d~d~~~~ 75 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGT--SDPYVTVQVGK-TKKRTKTIPQ-NLNPVWNEKFHFECHNS--SDRIKVRVWDEDDDIK 75 (127)
T ss_pred eEEEEEEECcCCcCCCCCCC--cCcEEEEEECC-EeeecceecC-CCCCccceEEEEEecCC--CCEEEEEEEECCCCcc
Confidence 68999999999999887764 99999999975 6889999988 89999999999998653 46799999998731
Q ss_pred --------CCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCC--CCccEEEEEE
Q 021710 98 --------ETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSG--RPQGKIRVKL 146 (308)
Q Consensus 98 --------~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg--~~~G~L~v~v 146 (308)
...+++||.+.++|.++.. ....|+.|...++ ..+|+|.+++
T Consensus 76 ~~~~~~~~~~~~~~iG~~~i~l~~~~~-------~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 76 SRLKQKFTRESDDFLGQTIIEVRTLSG-------EMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred cccceeccccCCCcceEEEEEhHHccC-------CCCeEEECccCCCCCcEeEEEEEEC
Confidence 1368999999999998743 2248999986544 3689999874
No 48
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.74 E-value=1.5e-17 Score=136.38 Aligned_cols=106 Identities=19% Similarity=0.355 Sum_probs=88.1
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC-----ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEE
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA-----YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEI 91 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~-----~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V 91 (308)
.+.|+|+|++|+||...+..+ .+||||++++.+. .+.+|++.++ +.||+|||+|.|++... +.+..|.|.|
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~--~~dpyVKv~Llp~~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L~~~~L~~~V 89 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPE--NSKVYVRVALLPCSSSTSCLFRTKALED-QDKPVFNEVFRVPISSTKLYQKTLQVDV 89 (124)
T ss_pred CCEEEEEEeEecCCcccccCC--CCCeEEEEEEccCCCCCCceEEcCccCC-CCCCccccEEEEECCHHHhhcCEEEEEE
Confidence 478999999999999876544 5999999999652 3789999998 99999999999998753 5678999999
Q ss_pred EeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEE
Q 021710 92 FHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEV 131 (308)
Q Consensus 92 ~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L 131 (308)
||.+ ...++++||.+.|+|.++..... ....||.|
T Consensus 90 ~~~~-~~~~~~~lG~~~i~L~~~~~~~~----~~~~Wy~l 124 (124)
T cd08680 90 CSVG-PDQQEECLGGAQISLADFESSEE----MSTKWYNL 124 (124)
T ss_pred EeCC-CCCceeEEEEEEEEhhhccCCCc----cccccccC
Confidence 9998 46789999999999999954332 23578865
No 49
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.74 E-value=3.5e-17 Score=134.01 Aligned_cols=100 Identities=21% Similarity=0.279 Sum_probs=83.7
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710 19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE 98 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~ 98 (308)
+.|.|+|++|++|...+ ..||||+|.++. .+.+|+++++ .||+|||+|.|.+.+ .+..|.|+|||++ .
T Consensus 2 ~~L~V~Vv~Ar~L~~~~-----~~dPYV~Ik~g~-~k~kT~v~~~--~nP~WnE~F~F~~~~--~~~~L~v~V~dkd--~ 69 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD-----KFNTYVTLKVQN-VKSTTIAVRG--SQPCWEQDFMFEINR--LDLGLVIELWNKG--L 69 (127)
T ss_pred ceEEEEEEEeeCCCCCC-----CCCCeEEEEECC-EEeEeeECCC--CCCceeeEEEEEEcC--CCCEEEEEEEeCC--C
Confidence 57999999999997654 268999999986 7889999976 499999999999976 3455999999988 3
Q ss_pred CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeC
Q 021710 99 TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR 133 (308)
Q Consensus 99 ~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~ 133 (308)
..|+|||++.|+|.++...... ....||+|..
T Consensus 70 ~~DD~lG~v~i~L~~v~~~~~~---~~~~Wy~L~~ 101 (127)
T cd08394 70 IWDTLVGTVWIPLSTIRQSNEE---GPGEWLTLDS 101 (127)
T ss_pred cCCCceEEEEEEhHHcccCCCC---CCCccEecCh
Confidence 4899999999999999876433 2358999973
No 50
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.74 E-value=2.2e-17 Score=135.36 Aligned_cols=106 Identities=21% Similarity=0.329 Sum_probs=87.7
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF 92 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~ 92 (308)
...|+|+|++|+||...+...+ .+||||++.+.+ ..+.+|+++++ +.||+|||+|.|.+... +.+..|.|+||
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g-~~dpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~~nE~f~f~v~~~~l~~~~L~~~V~ 91 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQ-RSDPYVKTYLLPDKSNRGKRKTSVKKK-TLNPVFNETLRYKVEREELPTRVLNLSVW 91 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCC-CCCcEEEEEEEcCCCccccccCccCcC-CCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 4789999999999998876422 499999999954 24679999998 99999999999998752 45678999999
Q ss_pred eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEE
Q 021710 93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEV 131 (308)
Q Consensus 93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L 131 (308)
|.+ ...++++||++.|+|.++.... ....||.|
T Consensus 92 d~~-~~~~~~~iG~~~i~L~~~~~~~-----~~~~W~~L 124 (125)
T cd08393 92 HRD-SLGRNSFLGEVEVDLGSWDWSN-----TQPTWYPL 124 (125)
T ss_pred eCC-CCCCCcEeEEEEEecCccccCC-----CCcceEEC
Confidence 998 4678899999999999996543 23589987
No 51
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.73 E-value=4e-17 Score=132.99 Aligned_cols=107 Identities=22% Similarity=0.370 Sum_probs=89.0
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEEe
Q 021710 17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIFH 93 (308)
Q Consensus 17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~d 93 (308)
..+.|+|+|++|++|...+..+. +||||++.+.+ ..+.+|+++++ +.||+|||+|.|.+... +....|.|+|||
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~--~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~V~d 90 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGT--SDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFTFKVPYSELGNKTLVFSVYD 90 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCC--CCCEEEEEEEcCCCCceecccCcC-CCCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence 34789999999999998887664 99999999864 35789999998 89999999999998642 345689999999
Q ss_pred ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710 94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL 132 (308)
Q Consensus 94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~ 132 (308)
++ ...++++||++.|+|+++..+. ....|+.|.
T Consensus 91 ~d-~~~~~~~lG~~~i~l~~~~~~~-----~~~~W~~l~ 123 (124)
T cd08385 91 FD-RFSKHDLIGEVRVPLLTVDLGH-----VTEEWRDLE 123 (124)
T ss_pred CC-CCCCCceeEEEEEecCcccCCC-----CcceEEEcc
Confidence 98 3568899999999999986643 335899884
No 52
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.73 E-value=2.7e-17 Score=131.94 Aligned_cols=102 Identities=21% Similarity=0.269 Sum_probs=84.8
Q ss_pred cEEEEEEEEeecCCCCCCC-CCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEeeeCC--CCCceEEEEEEe
Q 021710 19 HDLEITIICAKHLKNVNWR-NGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLPITHS--VRESVLTLEIFH 93 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~-~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~l~~~--~~~~~L~l~V~d 93 (308)
++|+|+|++|++|...+.. +. +||||+|.+.. ..+.+|+++++ +.||+|||+|.|.+... .....|.|+|||
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~--~Dpyv~v~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d 77 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGS--SDPYVTASFAKFGKPLYSTRIIRK-DLNPVWEETWFVLVTPDEVKAGERLSCRLWD 77 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCC--CCccEEEEEccCCCccEeeeeECC-CCCCccceeEEEEeCchhccCCCEEEEEEEe
Confidence 5799999999999988876 54 99999999854 35789999998 89999999999987642 134689999999
Q ss_pred ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710 94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL 132 (308)
Q Consensus 94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~ 132 (308)
++ ....|++||++.|+|.+|... ..|++++
T Consensus 78 ~d-~~~~dd~lG~~~i~l~~l~~~--------~~~~~~~ 107 (111)
T cd04041 78 SD-RFTADDRLGRVEIDLKELIED--------RNWMGRR 107 (111)
T ss_pred CC-CCCCCCcceEEEEEHHHHhcC--------CCCCccc
Confidence 98 356889999999999999843 2677764
No 53
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.73 E-value=5.5e-17 Score=132.28 Aligned_cols=106 Identities=20% Similarity=0.388 Sum_probs=88.6
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCC--CCceEEEEEEeccC
Q 021710 19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSV--RESVLTLEIFHSKL 96 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~--~~~~L~l~V~d~~~ 96 (308)
+.|+|+|++|++|++.++.+. +||||++++.. .+.+|+++++++.||+|||+|.|.+.... ....|.|+|||.+.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~--~dpyv~v~~~~-~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGK--IDPYVIIQCRT-QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCC--cCceEEEEECC-EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 579999999999999887764 99999999976 67889988755899999999999998741 25689999999983
Q ss_pred CCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeC
Q 021710 97 SETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR 133 (308)
Q Consensus 97 ~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~ 133 (308)
...+++||++.|+|.+++..... ..|+.|+.
T Consensus 78 -~~~d~~iG~~~i~l~~l~~~~~~-----~~~~~l~p 108 (124)
T cd04049 78 -FSDDDFIGEATIHLKGLFEEGVE-----PGTAELVP 108 (124)
T ss_pred -CCCCCeEEEEEEEhHHhhhCCCC-----cCceEeec
Confidence 56889999999999999875433 47888753
No 54
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.72 E-value=5.8e-17 Score=132.41 Aligned_cols=106 Identities=24% Similarity=0.394 Sum_probs=88.2
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF 92 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~ 92 (308)
.+.|+|+|++|+||...+..+ .+||||++.+.+ ..+.+|+++++ +.||+|||+|.|.+... +....|.|.||
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~--~~dpyv~v~l~~~~~~~~~~kT~v~~~-~~nP~wne~f~f~i~~~~l~~~~l~i~v~ 91 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSD--IPDPYVRLYLLPDKSKSTRRKTSVKKD-NLNPVFDETFEFPVSLEELKRRTLDVAVK 91 (127)
T ss_pred CCEEEEEEEEEECCCCccCCC--CCCceEEEEEEcCCCCCceEecccccC-CCCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence 478999999999999988765 499999999964 36889999998 89999999999998652 34578999999
Q ss_pred eccCC-CCCCceeeeEEEeCcccccCCCCCCCceeEEEEE
Q 021710 93 HSKLS-ETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEV 131 (308)
Q Consensus 93 d~~~~-~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L 131 (308)
|++.. ..++++||++.|+|.+|.... ....||.|
T Consensus 92 ~~~~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L 126 (127)
T cd04030 92 NSKSFLSREKKLLGQVLIDLSDLDLSK-----GFTQWYDL 126 (127)
T ss_pred ECCcccCCCCceEEEEEEecccccccC-----CccceEEC
Confidence 98732 157899999999999986543 23589987
No 55
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.72 E-value=7.9e-17 Score=131.21 Aligned_cols=105 Identities=24% Similarity=0.345 Sum_probs=89.9
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710 19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE 98 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~ 98 (308)
+.|+|+|++|++|+..+..+. +||||+++++...+.+|+++++ +.||+|||+|.|.+... ...|.|+|||++ ..
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~--~DPYv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~~~--~~~L~v~v~d~~-~~ 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGK--IDPYVRVLVNGIVKGRTVTISN-TLNPVWDEVLYVPVTSP--NQKITLEVMDYE-KV 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCC--cCCEEEEEECCEEeeceeEECC-CcCCccCceEEEEecCC--CCEEEEEEEECC-CC
Confidence 579999999999999887664 9999999997666889999887 89999999999998763 568999999998 35
Q ss_pred CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC
Q 021710 99 TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS 135 (308)
Q Consensus 99 ~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s 135 (308)
..|++||+++++|.++.... ...||.|.+.+
T Consensus 75 ~~d~~IG~~~~~l~~l~~~~------~~~~~~~~~~~ 105 (120)
T cd04045 75 GKDRSLGSVEINVSDLIKKN------EDGKYVEYDDE 105 (120)
T ss_pred CCCCeeeEEEEeHHHhhCCC------CCceEEecCCC
Confidence 68899999999999998752 25789887654
No 56
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.72 E-value=1.5e-16 Score=132.67 Aligned_cols=118 Identities=18% Similarity=0.332 Sum_probs=94.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC------------ceEEEEeecCCCCCCcc-ccEEEEeeeCCCCCce
Q 021710 20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA------------YRLATQSDDSGSTRPVW-NERFTLPITHSVRESV 86 (308)
Q Consensus 20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~------------~k~kT~v~k~gt~nP~W-nE~f~f~l~~~~~~~~ 86 (308)
+..|++++|++|+ .+++++ +||||++.+.+. .+++|+++++ +.||+| ||+|.|.+.. ...
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~--~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W~nE~f~f~v~~---~~~ 74 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFN--PDPYVKISIQPGKRHIFPALPHHGQECRTSIVEN-TINPVWHREQFVFVGLP---TDV 74 (137)
T ss_pred EEEEEEEEeCCCC-CccCCC--CCceEEEEEECCCcccccccccccceeeeeeEcC-CCCCceEceEEEEEcCC---CCE
Confidence 4689999999998 677765 999999999642 3789999998 999999 9999999864 458
Q ss_pred EEEEEEeccCCCC--CCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC--CCCccEEEEEE
Q 021710 87 LTLEIFHSKLSET--PKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS--GRPQGKIRVKL 146 (308)
Q Consensus 87 L~l~V~d~~~~~~--~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s--g~~~G~L~v~v 146 (308)
|.|+|||++.... .+++||++.|+|.+|+...... ....|++|.+.+ ...+|+|.+++
T Consensus 75 L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~--~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 75 LEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIG--DQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCC--ceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9999999763211 2789999999999998765443 457899987643 34689998876
No 57
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.72 E-value=1.1e-16 Score=131.86 Aligned_cols=110 Identities=21% Similarity=0.330 Sum_probs=87.5
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEe-eeC-CCCCceEEEEEE
Q 021710 17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLP-ITH-SVRESVLTLEIF 92 (308)
Q Consensus 17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~-l~~-~~~~~~L~l~V~ 92 (308)
....|+|+|++|++|+..+..++ .+||||++.+.+ ..+.||+++++ +.||+|||+|.|. +.. .+.+..|.|+||
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~~~~-~~DpyV~v~l~~~~~~~~kT~v~~~-t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~ 91 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDEQSG-TSDPYVKLQLLPEKEHKVKTRVLRK-TRNPVYDETFTFYGIPYNQLQDLSLHFAVL 91 (128)
T ss_pred CCCEEEEEEEEeECCCCCCCCCC-CcCCEEEEEEeCCcCceeeccEEcC-CCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence 35799999999999998776523 599999999964 35779999998 9999999999994 543 234567999999
Q ss_pred eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710 93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL 132 (308)
Q Consensus 93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~ 132 (308)
|++ ...++++||++.|+|+++....+. ....|++|.
T Consensus 92 d~d-~~~~d~~lG~~~i~L~~l~~~~~~---~~~~~~~~~ 127 (128)
T cd08388 92 SFD-RYSRDDVIGEVVCPLAGADLLNEG---ELLVSREIQ 127 (128)
T ss_pred EcC-CCCCCceeEEEEEeccccCCCCCc---eEEEEEecc
Confidence 998 467899999999999998654332 346788773
No 58
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.72 E-value=3.1e-16 Score=127.89 Aligned_cols=117 Identities=21% Similarity=0.388 Sum_probs=95.6
Q ss_pred cEEEEEEEEeecCCCCC--CCCCCCCCcEEEEEEcC-----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEE
Q 021710 19 HDLEITIICAKHLKNVN--WRNGGDLKPYVVFYVDP-----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEI 91 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~--~~~~~~~dPYv~v~l~~-----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V 91 (308)
..|+|+|++|++|+..+ ..+ ..||||++++.. ..+.+|+++++++.||+|||+|.|.+... ....|.|+|
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~--~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~-~~~~l~~~V 78 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGS--IVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVP-ELAFLRFVV 78 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCC--ccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCC-CeEEEEEEE
Confidence 57999999999999877 344 499999999942 35789999887345999999999998753 345799999
Q ss_pred EeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCC--CccEEEEEEEE
Q 021710 92 FHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGR--PQGKIRVKLVL 148 (308)
Q Consensus 92 ~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~--~~G~L~v~v~~ 148 (308)
||++. . ++++||++.++|++|..+ .+|++|++..++ ..|+|.|++++
T Consensus 79 ~d~~~-~-~~~~iG~~~~~l~~l~~g--------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 79 YDEDS-G-DDDFLGQACLPLDSLRQG--------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EeCCC-C-CCcEeEEEEEEhHHhcCc--------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 99984 4 889999999999998542 378999887775 47899999886
No 59
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.72 E-value=8.2e-17 Score=131.03 Aligned_cols=106 Identities=20% Similarity=0.340 Sum_probs=86.2
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeC--CCCCceEEEE
Q 021710 17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITH--SVRESVLTLE 90 (308)
Q Consensus 17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~--~~~~~~L~l~ 90 (308)
..+.|+|+|++|++|...+..+ .+||||++.+.+ ..+.+|+++++ +.||+|||+|.|.+.. .+....|.|+
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~--~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l~~~~l~~~ 90 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGS--LRNPYVKVYLLPDRSEKSKRRTKTVKK-TLNPEWNQTFEYSNVRRETLKERTLEVT 90 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCC--CCCCEEEEEEccCCCccccccccccCC-CCCCccccEEEEcccCHHHhCCCEEEEE
Confidence 3578999999999999888765 499999999965 35789999998 9999999999998643 2346789999
Q ss_pred EEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710 91 IFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL 132 (308)
Q Consensus 91 V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~ 132 (308)
|||++ ....+++||++.++|++...+ ....||+|.
T Consensus 91 V~d~~-~~~~~~~iG~~~i~l~~~~~~------~~~~W~~L~ 125 (125)
T cd04031 91 VWDYD-RDGENDFLGEVVIDLADALLD------DEPHWYPLQ 125 (125)
T ss_pred EEeCC-CCCCCcEeeEEEEeccccccc------CCcceEECc
Confidence 99998 356789999999999994332 124899873
No 60
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.71 E-value=1.6e-16 Score=129.55 Aligned_cols=107 Identities=20% Similarity=0.322 Sum_probs=88.1
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEc--CCceEEEEeecCCCCCCccccEEEEeeeC--CCCCceEEEEEE
Q 021710 17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVD--PAYRLATQSDDSGSTRPVWNERFTLPITH--SVRESVLTLEIF 92 (308)
Q Consensus 17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~--~~~k~kT~v~k~gt~nP~WnE~f~f~l~~--~~~~~~L~l~V~ 92 (308)
....|+|+|++|++|+..+..+. +||||++.+. ...+.+|+++++ +.||+|||+|.|.+.. .+.+..|.|+||
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~--~dpyv~v~~~~~~~~~~kT~v~~~-t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~ 90 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGT--SDPFVKIYLLPDKKHKLETKVKRK-NLNPHWNETFLFEGFPYEKLQQRVLYLQVL 90 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCC--CCceEEEEECCCCCcceeeeeecC-CCCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence 35789999999999998887664 9999999994 346789999998 9999999999998532 134568999999
Q ss_pred eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710 93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL 132 (308)
Q Consensus 93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~ 132 (308)
|++ ...++++||++.|+|+++.... ....|+.|.
T Consensus 91 d~d-~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~l~ 124 (125)
T cd08386 91 DYD-RFSRNDPIGEVSLPLNKVDLTE-----EQTFWKDLK 124 (125)
T ss_pred eCC-CCcCCcEeeEEEEecccccCCC-----CcceEEecC
Confidence 998 3668899999999999987643 336899884
No 61
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.71 E-value=9.8e-17 Score=130.21 Aligned_cols=106 Identities=25% Similarity=0.379 Sum_probs=86.8
Q ss_pred cccEEEEEEEEeecCCCCC-CCCCCCCCcEEEEEEcCC----ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEE
Q 021710 17 ITHDLEITIICAKHLKNVN-WRNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLE 90 (308)
Q Consensus 17 ~~~~L~VtIisAk~L~~~~-~~~~~~~dPYv~v~l~~~----~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~ 90 (308)
..+.|+|+|++|+||+..+ ..+ .+||||++.+.+. .+.+|+++++ +.||+|||+|.|.+... +....|.|+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~--~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~f~f~i~~~~l~~~~l~i~ 88 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKK--RSNPYVKVYLLPDKSKQSKRKTSVKKN-TTNPVFNETLKYHISKSQLETRTLQLS 88 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCC--CCCcEEEEEEecCCCcCceeeccccCC-CCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 3578999999999999887 444 5999999998542 4689999887 99999999999998753 345689999
Q ss_pred EEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEE
Q 021710 91 IFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEV 131 (308)
Q Consensus 91 V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L 131 (308)
|||++ ...++++||++.++|+++.... ....||+|
T Consensus 89 v~d~~-~~~~~~~iG~~~i~l~~l~~~~-----~~~~w~~l 123 (123)
T cd08521 89 VWHHD-RFGRNTFLGEVEIPLDSWDLDS-----QQSEWYPL 123 (123)
T ss_pred EEeCC-CCcCCceeeEEEEecccccccC-----CCccEEEC
Confidence 99988 3568899999999999996433 23689976
No 62
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.71 E-value=2.7e-16 Score=132.18 Aligned_cols=121 Identities=21% Similarity=0.324 Sum_probs=97.4
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS 97 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~ 97 (308)
...|.|.|++|++|... .++||++.|+.....||+++.+ +.||.|+|+|.|..... ...|+|.||+.+..
T Consensus 10 ~~sL~v~V~EAk~Lp~~-------~~~Y~~i~Ld~~~vaRT~v~~~-~~nP~W~E~F~f~~~~~--~~~l~v~v~k~~~~ 79 (146)
T cd04013 10 ENSLKLWIIEAKGLPPK-------KRYYCELCLDKTLYARTTSKLK-TDTLFWGEHFEFSNLPP--VSVITVNLYRESDK 79 (146)
T ss_pred EEEEEEEEEEccCCCCc-------CCceEEEEECCEEEEEEEEEcC-CCCCcceeeEEecCCCc--ccEEEEEEEEccCc
Confidence 36799999999999753 4799999999877789999998 89999999999986553 46799999875521
Q ss_pred C---CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC----------ccEEEEEEEEccCCC
Q 021710 98 E---TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP----------QGKIRVKLVLNGRPL 153 (308)
Q Consensus 98 ~---~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~----------~G~L~v~v~~~~~~~ 153 (308)
. .++.+||++.|++.+|.... ....||+|...++.+ .++|+|+++|.+...
T Consensus 80 ~~~~~~~~~IG~V~Ip~~~l~~~~-----~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~ 143 (146)
T cd04013 80 KKKKDKSQLIGTVNIPVTDVSSRQ-----FVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRV 143 (146)
T ss_pred cccccCCcEEEEEEEEHHHhcCCC-----cccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeee
Confidence 2 25789999999999998644 346999999876543 379999999987543
No 63
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.69 E-value=4.1e-16 Score=126.67 Aligned_cols=107 Identities=19% Similarity=0.304 Sum_probs=88.0
Q ss_pred cccEEEEEEEEeecCCCCC-CCCCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710 17 ITHDLEITIICAKHLKNVN-WRNGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF 92 (308)
Q Consensus 17 ~~~~L~VtIisAk~L~~~~-~~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~ 92 (308)
..+.|+|+|++|++|+..+ ..+ .+||||++.+.+ ..+.+|+++++ +.||+|||+|.|.+... +....|.|+||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~--~~dpyV~v~l~~~~~~~~~T~v~~~-~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVA--HCDPFVKVCLLPDERRSLQSKVKRK-TQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCC--CCCcEEEEEEeeCCCCceEeeeEcC-CCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 3578999999999999887 454 499999999843 35778999998 99999999999998753 23468999999
Q ss_pred eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710 93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL 132 (308)
Q Consensus 93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~ 132 (308)
|.+. ..++++||++.|+|+++..... ...|++|.
T Consensus 89 d~~~-~~~~~~iG~~~i~L~~l~~~~~-----~~~w~~L~ 122 (123)
T cd08390 89 DVDR-FSRHCIIGHVLFPLKDLDLVKG-----GVVWRDLE 122 (123)
T ss_pred ECCc-CCCCcEEEEEEEeccceecCCC-----ceEEEeCC
Confidence 9883 5678999999999999987542 35899884
No 64
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=3.1e-16 Score=125.76 Aligned_cols=99 Identities=24% Similarity=0.421 Sum_probs=83.4
Q ss_pred CCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCC
Q 021710 41 DLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSS 120 (308)
Q Consensus 41 ~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~ 120 (308)
.+||||++.++.....+|+++++ +.||+|||.|.|.+.+. ....|.|+|||++. . ++++||++.|+|.+++....
T Consensus 12 ~~dPYv~v~v~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~-~-~d~~iG~~~v~L~~l~~~~~- 86 (111)
T cd04052 12 LLSPYAELYLNGKLVYTTRVKKK-TNNPSWNASTEFLVTDR-RKSRVTVVVKDDRD-R-HDPVLGSVSISLNDLIDATS- 86 (111)
T ss_pred CCCceEEEEECCEEEEEEeeecc-CCCCccCCceEEEecCc-CCCEEEEEEEECCC-C-CCCeEEEEEecHHHHHhhhh-
Confidence 59999999998756789999888 89999999999998764 46789999999984 4 89999999999999976422
Q ss_pred CCCceeEEEEEeCCCCCCccEEEEEEEEcc
Q 021710 121 EPTQYVRKLEVLRPSGRPQGKIRVKLVLNG 150 (308)
Q Consensus 121 ~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~ 150 (308)
....||.|.+ ..+|+|+|++.|.+
T Consensus 87 ---~~~~w~~L~~---~~~G~i~~~~~~~p 110 (111)
T cd04052 87 ---VGQQWFPLSG---NGQGRIRISALWKP 110 (111)
T ss_pred ---ccceeEECCC---CCCCEEEEEEEEec
Confidence 2358999963 57899999999975
No 65
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=3.8e-16 Score=132.21 Aligned_cols=111 Identities=17% Similarity=0.215 Sum_probs=86.7
Q ss_pred EEEEEEEEeecCCCCCCCC------------CCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceE
Q 021710 20 DLEITIICAKHLKNVNWRN------------GGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVL 87 (308)
Q Consensus 20 ~L~VtIisAk~L~~~~~~~------------~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L 87 (308)
.|+|+|++|++|+..+... .+.+||||+|.+.+ .+.+|+++++ +.||+|||+|.|.+.....+..|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g-~~~kT~v~~~-t~nPvWNE~f~f~v~~p~~~~~l 78 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG-QKVKTSVKKN-SYNPEWNEQIVFPEMFPPLCERI 78 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC-EeeecceEcC-CCCCCcceEEEEEeeCCCcCCEE
Confidence 3789999999999877432 01489999999987 6789999998 89999999999997543245689
Q ss_pred EEEEEeccCCCCCCceeeeEEEeCcccccCCCCC--CCceeEEEEEeC
Q 021710 88 TLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSE--PTQYVRKLEVLR 133 (308)
Q Consensus 88 ~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~--~~~~~~~~~L~~ 133 (308)
.|+|||++. ..+|++||++.|+|.+|....... ......|+.|-.
T Consensus 79 ~~~v~D~d~-~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 79 KIQIRDWDR-VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred EEEEEECCC-CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 999999984 568999999999999987643210 001247888854
No 66
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.68 E-value=4.6e-16 Score=127.38 Aligned_cols=105 Identities=20% Similarity=0.297 Sum_probs=86.3
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC--CceEEEEeecCCCCCCccccEEEEe-eeC-CCCCceEEEEEEe
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP--AYRLATQSDDSGSTRPVWNERFTLP-ITH-SVRESVLTLEIFH 93 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~nP~WnE~f~f~-l~~-~~~~~~L~l~V~d 93 (308)
...|+|+|++|+||...+..+ ..||||++.+.+ ..+.+|+++++ .||+|||+|.|+ +.. .+.+..|.|+|||
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~--~~d~yVk~~llp~~~~~~kTkv~~~--~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~ 90 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGG--ASSWQVHLVLLPSKKQRAKTKVQRG--PNPVFNETFTFSRVEPEELNNMALRFRLYG 90 (124)
T ss_pred CCEEEEEEEEecCCCchhcCC--CCCcEEEEEEccCCcceeecccccC--CCCcccCEEEECCCCHHHhccCEEEEEEEE
Confidence 478999999999999888654 489999988854 45788988764 899999999998 553 2467889999999
Q ss_pred ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710 94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL 132 (308)
Q Consensus 94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~ 132 (308)
++ ...++++||++.|+|+++.... ....|+.|.
T Consensus 91 ~~-~~~~~~~lG~~~i~L~~l~~~~-----~~~~w~~L~ 123 (124)
T cd08389 91 VE-RMRKERLIGEKVVPLSQLNLEG-----ETTVWLTLE 123 (124)
T ss_pred CC-CcccCceEEEEEEeccccCCCC-----CceEEEeCC
Confidence 98 4678999999999999996533 346899884
No 67
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.67 E-value=4.6e-16 Score=128.08 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=79.5
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccC
Q 021710 17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKL 96 (308)
Q Consensus 17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~ 96 (308)
..++|+|+|++|++|.. +..+ .+||||+|.+.. .+.+|+++++ +.||+|||+|.|.+........|+|+|||++.
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g--~~DPYVkV~~~~-~~~kT~vi~~-t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~ 100 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFT--STDGYVKVFFGG-QEKRTEVIWN-NNNPRWNATFDFGSVELSPGGKLRFEVWDRDN 100 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCC--CCCeEEEEEECC-ccccCceecC-CCCCcCCCEEEEecccCCCCCEEEEEEEeCCC
Confidence 35899999999999984 5555 489999999986 5999999998 89999999999985432246789999999983
Q ss_pred CCCCCceeeeEEEeCccccc
Q 021710 97 SETPKPLVGSVKFPLAHLVD 116 (308)
Q Consensus 97 ~~~~d~lLG~~~ipL~~L~~ 116 (308)
...|++||++.|+|.....
T Consensus 101 -~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 101 -GWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred -CCCCCeeEEEEEEecCCce
Confidence 5689999999999997654
No 68
>PLN03008 Phospholipase D delta
Probab=99.67 E-value=5.4e-16 Score=158.60 Aligned_cols=125 Identities=23% Similarity=0.421 Sum_probs=103.4
Q ss_pred cccEEEEEEEEeecCCCCCCC-------------------------------C---------CCCCCcEEEEEEcCCceE
Q 021710 17 ITHDLEITIICAKHLKNVNWR-------------------------------N---------GGDLKPYVVFYVDPAYRL 56 (308)
Q Consensus 17 ~~~~L~VtIisAk~L~~~~~~-------------------------------~---------~~~~dPYv~v~l~~~~k~ 56 (308)
..++|+|+|.+|++|++.+++ + ..++||||+|.+...++.
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~ 91 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLA 91 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCccee
Confidence 368999999999999762210 0 124799999999876678
Q ss_pred EEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCC
Q 021710 57 ATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSG 136 (308)
Q Consensus 57 kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg 136 (308)
||+|+++ +.||+|||+|+|.+... ...|+|+|||++. . .+++||++.|+|++|..+. ....|++|.+.++
T Consensus 92 RTrVi~n-~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~-~-gaD~IG~a~IPL~~L~~Ge-----~vd~Wl~Ll~~~~ 161 (868)
T PLN03008 92 RTRVLKN-SQEPLWDEKFNISIAHP--FAYLEFQVKDDDV-F-GAQIIGTAKIPVRDIASGE-----RISGWFPVLGASG 161 (868)
T ss_pred eEEeCCC-CCCCCcceeEEEEecCC--CceEEEEEEcCCc-c-CCceeEEEEEEHHHcCCCC-----ceEEEEEccccCC
Confidence 9999988 89999999999999873 5689999999883 3 5789999999999998754 3469999998877
Q ss_pred CC---ccEEEEEEEEccC
Q 021710 137 RP---QGKIRVKLVLNGR 151 (308)
Q Consensus 137 ~~---~G~L~v~v~~~~~ 151 (308)
++ .++|+|++.|.+.
T Consensus 162 kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 162 KPPKAETAIFIDMKFTPF 179 (868)
T ss_pred CCCCCCcEEEEEEEEEEc
Confidence 65 5799999999885
No 69
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.67 E-value=7.8e-16 Score=131.87 Aligned_cols=107 Identities=20% Similarity=0.293 Sum_probs=87.1
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeC--CCCCceEEEE
Q 021710 17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITH--SVRESVLTLE 90 (308)
Q Consensus 17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~--~~~~~~L~l~ 90 (308)
..+.|+|+|++|+||...+..+ .+||||++.+.+ ..+++|+++++ +.||+|||+|.|.+.. .+.+..|.|+
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g--~~DPYVkv~l~~~~~~~~~~kT~vi~~-t~nP~WnE~f~f~~~~~~~l~~~~L~i~ 101 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGG--TSDSFVKCYLLPDKSKKSKQKTPVVKK-SVNPVWNHTFVYDGVSPEDLSQACLELT 101 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCC--CCCCEEEEEEEcCCCCCcceeCCccCC-CCCCCCCCEEEEecCCHHHhCCCEEEEE
Confidence 4589999999999999888765 499999999843 35889999998 8999999999998532 2345689999
Q ss_pred EEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710 91 IFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL 132 (308)
Q Consensus 91 V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~ 132 (308)
|||++. ..++++||++.|.+.++..... ...|+.|.
T Consensus 102 V~d~d~-~~~d~~lG~v~i~l~~~~~~~~-----~~~w~~~~ 137 (162)
T cd04020 102 VWDHDK-LSSNDFLGGVRLGLGTGKSYGQ-----AVDWMDST 137 (162)
T ss_pred EEeCCC-CCCCceEEEEEEeCCccccCCC-----ccccccCC
Confidence 999983 5679999999999999875432 24677664
No 70
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.66 E-value=1.9e-15 Score=121.46 Aligned_cols=113 Identities=19% Similarity=0.264 Sum_probs=84.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEEeccCCCC
Q 021710 21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIFHSKLSET 99 (308)
Q Consensus 21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~d~~~~~~ 99 (308)
|+|+|++|++|+.. + .+||||+++++...+.+|+++++ .||+|||+|.|.+... +....|.|.|||.+. ..
T Consensus 2 L~v~vi~a~~l~~~---~--~~dpyv~v~~~~~~~~kT~~~~~--~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~-~~ 73 (117)
T cd08383 2 LRLRILEAKNLPSK---G--TRDPYCTVSLDQVEVARTKTVEK--LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS-KD 73 (117)
T ss_pred eEEEEEEecCCCcC---C--CCCceEEEEECCEEeEecceEEC--CCCcccceEEEecCCccccEEEEEEEEEeccc-CC
Confidence 78999999999876 3 49999999998755689999876 8999999999998763 234678888888763 33
Q ss_pred CCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC--CCCccEEEEEEEE
Q 021710 100 PKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS--GRPQGKIRVKLVL 148 (308)
Q Consensus 100 ~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s--g~~~G~L~v~v~~ 148 (308)
.+.++|.+ +|..+..+. ....||+|...+ +...|+|+|+++|
T Consensus 74 ~~~~~g~v--~l~~~~~~~-----~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 74 RDIVIGKV--ALSKLDLGQ-----GKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred CeeEEEEE--EecCcCCCC-----cceeEEECccCCCCCCcCceEEEEEEC
Confidence 45556654 455544322 346899997543 3458999999975
No 71
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.66 E-value=9.6e-16 Score=127.72 Aligned_cols=104 Identities=16% Similarity=0.293 Sum_probs=86.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC---CceEEEEeecCCCCCCccccEEEEeeeCC--------------CC
Q 021710 21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDP---AYRLATQSDDSGSTRPVWNERFTLPITHS--------------VR 83 (308)
Q Consensus 21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~---~~k~kT~v~k~gt~nP~WnE~f~f~l~~~--------------~~ 83 (308)
|+|+|++|++|... ..+ .+||||++++.. ..+.+|+++++ +.||+|||+|.|.+... +.
T Consensus 1 L~V~Vi~A~~L~~~-~~g--~~dPyv~v~~~~~~~~~~~rT~vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~ 76 (137)
T cd08675 1 LSVRVLECRDLALK-SNG--TCDPFARVTLNYSSKTDTKRTKVKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLE 76 (137)
T ss_pred CEEEEEEccCCCcc-cCC--CCCcEEEEEEecCCcCCeeccceeeC-CCCCCcceEEEEEcccccccccccccccccccc
Confidence 67999999999887 554 499999999984 47899999998 89999999999998753 13
Q ss_pred CceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC
Q 021710 84 ESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP 134 (308)
Q Consensus 84 ~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~ 134 (308)
...|.|+|||++. ...++|||++.|+|+++.... ....||.|...
T Consensus 77 ~~~l~i~V~d~~~-~~~~~~IG~~~i~l~~l~~~~-----~~~~W~~L~~~ 121 (137)
T cd08675 77 KSELRVELWHASM-VSGDDFLGEVRIPLQGLQQAG-----SHQAWYFLQPR 121 (137)
T ss_pred ccEEEEEEEcCCc-CcCCcEEEEEEEehhhccCCC-----cccceEecCCc
Confidence 5689999999983 568999999999999988543 23689999754
No 72
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.66 E-value=9.6e-16 Score=126.81 Aligned_cols=98 Identities=17% Similarity=0.302 Sum_probs=83.0
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC------CceEEEEeecCCCCCCccccEEEEeeeCC---CCCceEE
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP------AYRLATQSDDSGSTRPVWNERFTLPITHS---VRESVLT 88 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~------~~k~kT~v~k~gt~nP~WnE~f~f~l~~~---~~~~~L~ 88 (308)
...|+|+|++|++|+..+..+. +||||+|.+.+ ..+.+|+++++ +.||+|||+|.|.+... ..+..|.
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~--~dPyv~v~l~~~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~~~~~~~~l~ 91 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGS--SDPFVKVELLPRHLFPDVPTPKTQVKKK-TLFPLFDESFEFNVPPEQCSVEGALLL 91 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCC--CCCEEEEEEECCCcCccccccccccCcC-CCCCccCCEEEEEechhhcccCCCEEE
Confidence 4789999999999998877654 99999999963 35789999998 89999999999998752 2456899
Q ss_pred EEEEeccCCCCCCceeeeEEEeCcccccCCC
Q 021710 89 LEIFHSKLSETPKPLVGSVKFPLAHLVDSDS 119 (308)
Q Consensus 89 l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~ 119 (308)
|+|||++ ...++++||++.|+|++|..-.+
T Consensus 92 ~~V~d~d-~~~~d~~iG~~~i~l~~l~~~~~ 121 (133)
T cd04009 92 FTVKDYD-LLGSNDFEGEAFLPLNDIPGVED 121 (133)
T ss_pred EEEEecC-CCCCCcEeEEEEEeHHHCCcccc
Confidence 9999998 45679999999999999985443
No 73
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.66 E-value=1.1e-15 Score=129.63 Aligned_cols=103 Identities=25% Similarity=0.415 Sum_probs=85.5
Q ss_pred CCCcccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC----------------------------ceEEEEeecCCC
Q 021710 14 SSPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA----------------------------YRLATQSDDSGS 65 (308)
Q Consensus 14 ~~~~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~----------------------------~k~kT~v~k~gt 65 (308)
..++...|+|+|++|++|...+..+. +||||+|.+.+. ...+|+++++ +
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~--~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~-t 99 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGF--SDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ-T 99 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCC--CCceEEEEEcccccccccccccccccccccccccccccccccEecceecC-C
Confidence 34557999999999999999887764 999999998631 2478999988 9
Q ss_pred CCCccccEEEEeeeCCCCCceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEE
Q 021710 66 TRPVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEV 131 (308)
Q Consensus 66 ~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L 131 (308)
.||+|||+|.|.+... ....|.|+|||++ +++||++.|+|++|... . ...||.|
T Consensus 100 lnP~WnE~F~f~v~~~-~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~~~-~-----~d~W~~L 153 (153)
T cd08676 100 LNPVWNETFRFEVEDV-SNDQLHLDIWDHD-----DDFLGCVNIPLKDLPSC-G-----LDSWFKL 153 (153)
T ss_pred CCCccccEEEEEeccC-CCCEEEEEEEecC-----CCeEEEEEEEHHHhCCC-C-----CCCeEeC
Confidence 9999999999999753 4678999999986 78999999999999832 2 2589876
No 74
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.65 E-value=4e-16 Score=128.68 Aligned_cols=110 Identities=19% Similarity=0.362 Sum_probs=88.3
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF 92 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~ 92 (308)
.+.|.|+|++|++|...+..+. +||||++.+.+ ..+.+|+++++ +.||+|||+|.|.+... +....|.|+||
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~--~DpyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~l~~~~l~~~V~ 88 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGY--SDPFVKLYLKPDAGKKSKHKTQVKKK-TLNPEFNEEFFYDIKHSDLAKKTLEITVW 88 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCC--CCcEEEEEEEcCCCccCCceeeeEec-cCCCCcccEEEEECCHHHhCCCEEEEEEE
Confidence 5899999999999998887664 99999999954 24789999998 99999999999998752 34568999999
Q ss_pred eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC
Q 021710 93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP 138 (308)
Q Consensus 93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~ 138 (308)
|++ ...++++||++.|++...- . ....|+++++..+++
T Consensus 89 d~d-~~~~~~~lG~~~i~l~~~~--~-----~~~~W~~~l~~~~~~ 126 (133)
T cd08384 89 DKD-IGKSNDYIGGLQLGINAKG--E-----RLRHWLDCLKNPDKK 126 (133)
T ss_pred eCC-CCCCccEEEEEEEecCCCC--c-----hHHHHHHHHhCCCCC
Confidence 988 3567899999999997521 1 335788887544443
No 75
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.65 E-value=1.5e-15 Score=127.84 Aligned_cols=91 Identities=24% Similarity=0.461 Sum_probs=81.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710 19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE 98 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~ 98 (308)
+.|+|+|++|++|...+. + .+||||++.+.. .+.+|+++++ +.||+|||+|.|.+... ...|.|+|||++ ..
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~--~sDPYV~v~~g~-~~~kT~vvk~-t~nP~WnE~f~f~i~~~--~~~l~~~V~D~d-~~ 73 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-T--SSDPYVVLTLGN-QKVKTRVIKK-NLNPVWNEELTLSVPNP--MAPLKLEVFDKD-TF 73 (145)
T ss_pred eEEEEEEEeeECCCCCCC-C--CcCcEEEEEECC-EEEEeeeEcC-CCCCeecccEEEEecCC--CCEEEEEEEECC-CC
Confidence 679999999999998876 4 499999999986 7899999998 99999999999999874 678999999998 36
Q ss_pred CCCceeeeEEEeCcccccC
Q 021710 99 TPKPLVGSVKFPLAHLVDS 117 (308)
Q Consensus 99 ~~d~lLG~~~ipL~~L~~~ 117 (308)
..|++||++.++|+++...
T Consensus 74 ~~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 74 SKDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred CCCCEEEEEEEEHHHhhhh
Confidence 6889999999999998764
No 76
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.65 E-value=1.7e-15 Score=124.59 Aligned_cols=107 Identities=22% Similarity=0.389 Sum_probs=89.6
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEe
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFH 93 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d 93 (308)
...|+|+|++|++|+..+..+ ..||||++.+.+ ..+.+|+++++ +.+|.|||+|.|.+........|.|+|||
T Consensus 12 ~~~l~v~i~~a~nL~~~~~~~--~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~wne~f~~~~~~~~~~~~l~v~v~d 88 (131)
T cd04026 12 DNKLTVEVREAKNLIPMDPNG--LSDPYVKLKLIPDPKNETKQKTKTIKK-TLNPVWNETFTFDLKPADKDRRLSIEVWD 88 (131)
T ss_pred CCEEEEEEEEeeCCCCcCCCC--CCCCcEEEEEEcCCCCCceecceeecC-CCCCCccceEEEeCCchhcCCEEEEEEEE
Confidence 378999999999999877665 499999999963 36899999998 89999999999998763235689999999
Q ss_pred ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC
Q 021710 94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP 134 (308)
Q Consensus 94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~ 134 (308)
++ ....+++||++.++|+++... . ...||+|.+.
T Consensus 89 ~~-~~~~~~~iG~~~~~l~~l~~~-~-----~~~w~~L~~~ 122 (131)
T cd04026 89 WD-RTTRNDFMGSLSFGVSELIKM-P-----VDGWYKLLNQ 122 (131)
T ss_pred CC-CCCCcceeEEEEEeHHHhCcC-c-----cCceEECcCc
Confidence 88 356889999999999999864 2 2589999764
No 77
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.64 E-value=5.1e-16 Score=128.79 Aligned_cols=111 Identities=20% Similarity=0.293 Sum_probs=88.6
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC----ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF 92 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~----~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~ 92 (308)
...|.|+|++|++|...+..+. +||||++.+... .+.+|+++++ +.||+|||+|.|.+... +....|.|+||
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~--~Dpyv~v~l~~~~~~~~~~kT~v~k~-t~nP~w~e~F~f~v~~~~~~~~~l~~~v~ 90 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGL--ADPYVKVNLYYGKKRISKKKTHVKKC-TLNPVFNESFVFDIPSEELEDISVEFLVL 90 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCC--CCeEEEEEEEcCCceeeeEcCccccC-CCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 4789999999999999887764 999999998542 3678999988 99999999999998642 34567999999
Q ss_pred eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCc
Q 021710 93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQ 139 (308)
Q Consensus 93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~ 139 (308)
|++ ...++++||++.|++.. . .. ....|+.|.+..+++.
T Consensus 91 d~d-~~~~~~~iG~~~~~~~~-~-~~-----~~~~w~~l~~~~~~~i 129 (136)
T cd08404 91 DSD-RVTKNEVIGRLVLGPKA-S-GS-----GGHHWKEVCNPPRRQI 129 (136)
T ss_pred ECC-CCCCCccEEEEEECCcC-C-Cc-----hHHHHHHHHhCCCCee
Confidence 998 46789999999999988 2 21 2247888876555543
No 78
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.63 E-value=1.1e-16 Score=151.84 Aligned_cols=108 Identities=24% Similarity=0.371 Sum_probs=95.7
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEE
Q 021710 17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIF 92 (308)
Q Consensus 17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~ 92 (308)
....|+|+|.+|+||...+..+. +||||++.+.+ ..+++|++++. ++||+|||+|+|.+.....+..|.|+||
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGl--SDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~DkdrRlsiEvW 254 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGL--SDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSDKDRRLSIEVW 254 (683)
T ss_pred cCceEEEEehhhccccccCCCCC--CCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEecccccccceeEEEEe
Confidence 34679999999999999998775 99999999965 35899999999 9999999999999998778899999999
Q ss_pred eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC
Q 021710 93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP 134 (308)
Q Consensus 93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~ 134 (308)
||| +..+++|+|+..+.|++|.... ...||.|++.
T Consensus 255 DWD-rTsRNDFMGslSFgisEl~K~p------~~GWyKlLsq 289 (683)
T KOG0696|consen 255 DWD-RTSRNDFMGSLSFGISELQKAP------VDGWYKLLSQ 289 (683)
T ss_pred ccc-ccccccccceecccHHHHhhcc------hhhHHHHhhh
Confidence 999 6789999999999999998854 3589999864
No 79
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=2.2e-15 Score=123.31 Aligned_cols=92 Identities=15% Similarity=0.217 Sum_probs=78.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC-ceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710 20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA-YRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE 98 (308)
Q Consensus 20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~-~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~ 98 (308)
.|+|+|++|++|...+..+. +||||++.+... .+.+|+++++ +.||+|||+|.|.+... ....|.|+|||++ ..
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~--~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~-~~~~L~~~V~d~d-~~ 75 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGK--SDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLP-GNSILKISVMDYD-LL 75 (124)
T ss_pred CEEEEEEECcCCCCCCCCCC--CCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCC-CCCEEEEEEEECC-CC
Confidence 37999999999999887764 999999999763 2467888888 99999999999987643 4678999999998 35
Q ss_pred CCCceeeeEEEeCccccc
Q 021710 99 TPKPLVGSVKFPLAHLVD 116 (308)
Q Consensus 99 ~~d~lLG~~~ipL~~L~~ 116 (308)
..|++||++.|+|++...
T Consensus 76 ~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 76 GSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCceeEEEEEeeccccc
Confidence 689999999999998764
No 80
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.62 E-value=2.4e-15 Score=125.52 Aligned_cols=94 Identities=19% Similarity=0.267 Sum_probs=78.7
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC----ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF 92 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~----~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~ 92 (308)
.+.|.|+|++|+||...+......+||||+|++.+. .+.||++.++ +.||+|||.|.|.+... +.+..|.|+||
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L~~~~L~~~V~ 92 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKH-KINPVWNEMIMFELPSELLAASSVELEVL 92 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeC-CCCCccccEEEEECCHHHhCccEEEEEEE
Confidence 478999999999999887331113899999998652 3679999998 99999999999999863 56788999999
Q ss_pred eccCCCCCCceeeeEEEeCcc
Q 021710 93 HSKLSETPKPLVGSVKFPLAH 113 (308)
Q Consensus 93 d~~~~~~~d~lLG~~~ipL~~ 113 (308)
|++ ..+++++||++.|.+..
T Consensus 93 d~d-~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 93 NQD-SPGQSLPLGRCSLGLHT 112 (138)
T ss_pred eCC-CCcCcceeceEEecCcC
Confidence 998 46789999999999864
No 81
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.62 E-value=3.9e-15 Score=123.42 Aligned_cols=109 Identities=19% Similarity=0.306 Sum_probs=85.7
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF 92 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~ 92 (308)
.+.|+|+|++|++|...+..+. +||||++.+.. ..+.+|+++++ +.||+|||+|.|.+... +.+..|.|+||
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~--~dpyV~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~~~~~l~~~v~ 90 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGT--SDPYVKVWLMYKDKRVEKKKTVIKKR-TLNPVFNESFIFNIPLERLRETTLIITVM 90 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCC--CCceEEEEEEeCCCccccccCcceeC-CCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 4789999999999998877664 99999999842 24678999998 89999999999998642 34568999999
Q ss_pred eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCC
Q 021710 93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGR 137 (308)
Q Consensus 93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~ 137 (308)
|.+ ...++++||++.|++.+.-. ....|++++...++
T Consensus 91 d~~-~~~~~~~lG~~~i~~~~~~~-------~~~~w~~~~~~~~~ 127 (136)
T cd08405 91 DKD-RLSRNDLIGKIYLGWKSGGL-------ELKHWKDMLSKPRQ 127 (136)
T ss_pred ECC-CCCCCcEeEEEEECCccCCc-------hHHHHHHHHhCCCC
Confidence 998 45688999999999987511 22456666654443
No 82
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.61 E-value=3.1e-15 Score=124.55 Aligned_cols=92 Identities=21% Similarity=0.334 Sum_probs=77.8
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC----ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF 92 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~----~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~ 92 (308)
...|+|+|++|+||...+..+ .+||||++.+.+. .+.||+++++ +.||+|||+|.|.+... +.+..|.|+||
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g--~~DpyVkv~l~~~~~~~~k~kT~v~k~-t~nP~~nE~f~F~v~~~~l~~~~l~~~V~ 90 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKT--TADPFVKVYLLQDGRKISKKKTSVKRD-DTNPIFNEAMIFSVPAIVLQDLSLRVTVA 90 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCC--CCCeEEEEEEEeCCccccccCCccccC-CCCCeeceeEEEECCHHHhCCcEEEEEEE
Confidence 478999999999999887655 4999999999642 3678999988 89999999999998753 56788999999
Q ss_pred eccCCCCCCceeeeEEEeCcc
Q 021710 93 HSKLSETPKPLVGSVKFPLAH 113 (308)
Q Consensus 93 d~~~~~~~d~lLG~~~ipL~~ 113 (308)
|++ ...++++||++.|....
T Consensus 91 ~~d-~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 91 EST-EDGKTPNVGHVIIGPAA 110 (136)
T ss_pred eCC-CCCCCCeeEEEEECCCC
Confidence 998 46789999999997653
No 83
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.61 E-value=6.8e-15 Score=121.98 Aligned_cols=107 Identities=17% Similarity=0.239 Sum_probs=84.1
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEE
Q 021710 17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEI 91 (308)
Q Consensus 17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V 91 (308)
..+.|+|+|++|++|...+..+. +||||+|.+.. ..+.+|+++++ +.||+|||+|.|.+... +....|.|+|
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~--~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~v 89 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGL--SDPYVKIHLMQNGKRLKKKKTTIKKR-TLNPYYNESFSFEVPFEQIQKVHLIVTV 89 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCC--CCCeEEEEEEECCcccceeeccceeC-CCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 35789999999999998887654 99999999853 14678998888 99999999999998643 3345899999
Q ss_pred EeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC
Q 021710 92 FHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP 134 (308)
Q Consensus 92 ~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~ 134 (308)
||++ ...++++||++.|++...-. ....|+++++.
T Consensus 90 ~d~~-~~~~~~~iG~~~i~~~~~~~-------~~~~W~~~~~~ 124 (136)
T cd08402 90 LDYD-RIGKNDPIGKVVLGCNATGA-------ELRHWSDMLAS 124 (136)
T ss_pred EeCC-CCCCCceeEEEEECCccCCh-------HHHHHHHHHhC
Confidence 9998 46688999999999976321 22456666543
No 84
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.61 E-value=1.2e-15 Score=127.41 Aligned_cols=109 Identities=17% Similarity=0.262 Sum_probs=86.0
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC-----ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEE
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA-----YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEI 91 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~-----~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V 91 (308)
.+.|.|+|++|+||...+..+ ..||||++.+.+. .+.||++.++ +.||+|||+|.|.+... +.+..|.|+|
T Consensus 14 ~~~L~V~VikarnL~~~~~~~--~~dpyVkv~llp~~~~~~~~~kT~v~~~-t~nPvfnEtF~f~i~~~~l~~~~L~~~V 90 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNK--APDTYVKLTLLNSDGQEISKSKTSIRRG-QPDPEFKETFVFQVALFQLSEVTLMFSV 90 (138)
T ss_pred CCeEEEEEEEecCCCccccCC--CCCeeEEEEEEeCCCcceeeccceeecC-CCCCcEeeeEEEECCHHHhCccEEEEEE
Confidence 488999999999999887665 4999999999642 2579999998 99999999999999753 4677999999
Q ss_pred EeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCC
Q 021710 92 FHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSG 136 (308)
Q Consensus 92 ~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg 136 (308)
||.+ ...++++||++.|.+...-.+ ....|+.+++..+
T Consensus 91 ~~~~-~~~~~~~iG~v~l~~~~~~~~------~~~hW~~~l~~~~ 128 (138)
T cd08408 91 YNKR-KMKRKEMIGWFSLGLNSSGEE------EEEHWNEMKESKG 128 (138)
T ss_pred EECC-CCCCCcEEEEEEECCcCCCch------HHHHHHHHHhCCC
Confidence 9998 367899999999988754321 1235666654333
No 85
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.61 E-value=1.8e-14 Score=116.60 Aligned_cols=82 Identities=21% Similarity=0.367 Sum_probs=68.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEecc-
Q 021710 21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSK- 95 (308)
Q Consensus 21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~- 95 (308)
|+|+|++|+||+ + .+||||++.+++ ..+.+|+++++ +.||+|||+|.|.+.. ...|.|.|||++
T Consensus 1 L~V~V~~A~~L~-----~--~sDPYV~l~v~~~~~~~~~~KTk~i~~-TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~ 69 (118)
T cd08686 1 LNVIVHSAQGFK-----Q--SANLYCTLEVDSFGYFVKKAKTRVCRD-TTEPNWNEEFEIELEG---SQTLRILCYEKCY 69 (118)
T ss_pred CEEEEEeCCCCC-----C--CCCCEEEEEEcCccccceeeeeeeecC-CCCCccceEEEEEeCC---CCEEEEEEEEccc
Confidence 689999999996 2 389999999975 25799999998 9999999999999974 568999999983
Q ss_pred -----CCCCCCceeeeEEEeCcc
Q 021710 96 -----LSETPKPLVGSVKFPLAH 113 (308)
Q Consensus 96 -----~~~~~d~lLG~~~ipL~~ 113 (308)
.....|++||++.|.|+-
T Consensus 70 ~~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 70 SKVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccccccCcccEEEEEEEEECH
Confidence 134689999888887754
No 86
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.61 E-value=1.7e-15 Score=124.54 Aligned_cols=109 Identities=17% Similarity=0.280 Sum_probs=88.3
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC----ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF 92 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~----~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~ 92 (308)
.+.|+|+|++|++|+..+..+. +||||++.+.+. .+.+|+++++ +.||.|||+|.|.+... +....|.|+||
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~--~dpyv~v~l~~~~~~~~~~~T~~~~~-~~~P~wne~f~f~i~~~~l~~~~l~~~v~ 89 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGL--SDPYVKVSLLQGGKKLKKKKTSVKKG-TLNPVFNEAFSFDVPAEQLEEVSLVITVV 89 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCC--CCcEEEEEEEcCCeEeeeecCcceec-CCCCeeeeeEEEECCHHHhCCcEEEEEEE
Confidence 4789999999999998876654 999999999653 3679999987 89999999999998763 23578999999
Q ss_pred eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCC
Q 021710 93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGR 137 (308)
Q Consensus 93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~ 137 (308)
|.+. ...+++||.+.|+|++ ... ....|+.|++..++
T Consensus 90 d~~~-~~~~~~lG~~~i~l~~--~~~-----~~~~W~~l~~~~~~ 126 (134)
T cd00276 90 DKDS-VGRNEVIGQVVLGPDS--GGE-----ELEHWNEMLASPRK 126 (134)
T ss_pred ecCC-CCCCceeEEEEECCCC--CCc-----HHHHHHHHHhCCCC
Confidence 9983 4688999999999999 221 23589988765444
No 87
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.61 E-value=1.7e-15 Score=125.20 Aligned_cols=110 Identities=18% Similarity=0.205 Sum_probs=85.7
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEE
Q 021710 17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEI 91 (308)
Q Consensus 17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V 91 (308)
..+.|+|+|++|++|...+..+. +||||++.+.. ..+.+|+++++ +.||+|||+|.|.+... +.+..|.|+|
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~--~dpyvkv~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~~~~~~l~~~v 88 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGF--SDPYVKVSLMCEGRRLKKKKTSVKKN-TLNPTYNEALVFDVPPENVDNVSLIIAV 88 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCC--CCceEEEEEEeCCcccceecCCcccC-CCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 35889999999999999887765 99999999843 24678998877 89999999999998642 3445799999
Q ss_pred EeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCC
Q 021710 92 FHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGR 137 (308)
Q Consensus 92 ~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~ 137 (308)
||++ ..+++++||++.|++.... . ....|+.+++..++
T Consensus 89 ~d~~-~~~~~~~IG~~~l~~~~~~--~-----~~~~w~~~~~~~~~ 126 (134)
T cd08403 89 VDYD-RVGHNELIGVCRVGPNADG--Q-----GREHWNEMLANPRK 126 (134)
T ss_pred EECC-CCCCCceeEEEEECCCCCC--c-----hHHHHHHHHHCCCC
Confidence 9998 4678999999999876321 1 12467777655444
No 88
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.60 E-value=1.8e-15 Score=126.07 Aligned_cols=93 Identities=19% Similarity=0.288 Sum_probs=78.2
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC----ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF 92 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~----~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~ 92 (308)
...|+|+|++|+||...+ .+ .+||||++.+.+. .+.+|+++++ +.||+|||+|.|.+... +.+..|.|+||
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~--~~d~yVkv~l~~~~~~~~~~kT~v~~~-~~nP~fnE~F~f~i~~~~l~~~~L~~~V~ 89 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HA--HTSVYVKVSLMIHNKVVKTKKTEVVDG-AASPSFNESFSFKVTSRQLDTASLSLSVM 89 (137)
T ss_pred CCeEEEEEEEecCCCccc-CC--CCCeEEEEEEEECCEEeeeeecccEeC-CCCCcccceEEEECCHHHhCccEEEEEEE
Confidence 478999999999999887 55 4999999998652 3678999887 99999999999999753 45678999999
Q ss_pred eccCCCCCCceeeeEEEeCcccc
Q 021710 93 HSKLSETPKPLVGSVKFPLAHLV 115 (308)
Q Consensus 93 d~~~~~~~d~lLG~~~ipL~~L~ 115 (308)
|.+. ..++++||++.|......
T Consensus 90 ~~~~-~~~~~~lG~v~ig~~~~~ 111 (137)
T cd08409 90 QSGG-VRKSKLLGRVVLGPFMYA 111 (137)
T ss_pred eCCC-CCCcceEEEEEECCcccC
Confidence 9984 668999999999865544
No 89
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.60 E-value=1.1e-14 Score=118.25 Aligned_cols=99 Identities=18% Similarity=0.246 Sum_probs=81.7
Q ss_pred EEEeecCCCCCCCCCCCCCcEEEEEEcCCc------eEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC-
Q 021710 25 IICAKHLKNVNWRNGGDLKPYVVFYVDPAY------RLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS- 97 (308)
Q Consensus 25 IisAk~L~~~~~~~~~~~dPYv~v~l~~~~------k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~- 97 (308)
.++|++|...++.+. +||||++.+.... +.+|+++++ +.||+|||+|.|.+... ....|.|+|||++..
T Consensus 6 ~i~a~~L~~~d~~g~--~DPyv~v~~~~~~~~~~~~~~kT~vi~~-t~nP~wne~f~f~~~~~-~~~~l~~~V~d~d~~~ 81 (120)
T cd04048 6 SISCRNLLDKDVLSK--SDPFVVVYVKTGGSGQWVEIGRTEVIKN-NLNPDFVTTFTVDYYFE-EVQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEccCCCCCCCCCC--CCcEEEEEEEcCCCCceEEeccEeEeCC-CCCCCceEEEEEEEEeE-eeeEEEEEEEEecCCc
Confidence 589999999988765 9999999997643 589999998 99999999999986532 356799999999841
Q ss_pred --CCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710 98 --ETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL 132 (308)
Q Consensus 98 --~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~ 132 (308)
...+++||++.++|++|+.... ...|+.|.
T Consensus 82 ~~~~~~d~iG~~~i~l~~l~~~~~-----~~~~~~l~ 113 (120)
T cd04048 82 KDLSDHDFLGEAECTLGEIVSSPG-----QKLTLPLK 113 (120)
T ss_pred CCCCCCcEEEEEEEEHHHHhcCCC-----cEEEEEcc
Confidence 5689999999999999986542 35788883
No 90
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.60 E-value=1.7e-15 Score=125.80 Aligned_cols=110 Identities=16% Similarity=0.268 Sum_probs=84.5
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF 92 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~ 92 (308)
.+.|+|+|++|++|+..+..+. +||||++.+.. ..+.+|+++++ +.||+|||+|.|.+... +.+..|.|+||
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~--~DPyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~F~f~i~~~~l~~~~l~~~V~ 89 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQG--SDPFVKIQLVHGLKLIKTKKTSCMRG-TIDPFYNESFSFKVPQEELENVSLVFTVY 89 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCC--CCeEEEEEEEcCCcccceEcCccccC-CCCCccceeEEEeCCHHHhCCCEEEEEEE
Confidence 4789999999999999887764 99999999843 24678999988 99999999999998642 34557999999
Q ss_pred eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCC
Q 021710 93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGR 137 (308)
Q Consensus 93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~ 137 (308)
|++ ...++++||++.|....+-. . ....|+.|+...++
T Consensus 90 d~d-~~~~~~~iG~~~l~~~~~~~--~----~~~~W~~l~~~~~~ 127 (135)
T cd08410 90 GHN-VKSSNDFIGRIVIGQYSSGP--S----ETNHWRRMLNSQRT 127 (135)
T ss_pred eCC-CCCCCcEEEEEEEcCccCCc--h----HHHHHHHHHhCCCC
Confidence 998 46789999998865433221 1 12467777665444
No 91
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.59 E-value=8.8e-15 Score=121.27 Aligned_cols=93 Identities=18% Similarity=0.261 Sum_probs=77.0
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCC-CCCccccEEEEeeeCCCCCceEEEEEE
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGS-TRPVWNERFTLPITHSVRESVLTLEIF 92 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt-~nP~WnE~f~f~l~~~~~~~~L~l~V~ 92 (308)
.+.|+|+|++|+||+.....+ ..||||+|++.. ..++||++.++ + .+|+|||+|.|++...+.+..|.|+||
T Consensus 13 ~~rLtV~VikarnL~~~~~~~--~~dpYVKV~L~~~~k~~~KkKT~v~k~-t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~ 89 (135)
T cd08692 13 NSRIQLQILEAQNLPSSSTPL--TLSFFVKVGMFSTGGLLYKKKTRLVKS-SNGQVKWGETMIFPVTQQEHGIQFLIKLY 89 (135)
T ss_pred CCeEEEEEEEccCCCcccCCC--CCCcEEEEEEEECCCcceeecCccEEC-CCCCceecceEEEeCCchhheeEEEEEEE
Confidence 578999999999999764333 479999999853 25889999998 6 469999999999987655678999999
Q ss_pred eccCCCCCCceeeeEEEeCccc
Q 021710 93 HSKLSETPKPLVGSVKFPLAHL 114 (308)
Q Consensus 93 d~~~~~~~d~lLG~~~ipL~~L 114 (308)
|++ +..++++||++.|.++..
T Consensus 90 d~~-~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 90 SRS-SVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eCC-CCcCCceEEEEEECCccC
Confidence 988 467899999999998764
No 92
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.58 E-value=6.6e-15 Score=162.54 Aligned_cols=121 Identities=17% Similarity=0.259 Sum_probs=101.8
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS 97 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~ 97 (308)
.+.|.|+|++|+||. ..++ .+||||++.+++..+.||+++++ +.||+|||.|+|.+..+..+..|+|+|||+|.
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~--~sdPyv~l~~g~~~~~kTkvvk~-~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~- 2052 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMG--NTNAFCKLTLGNGPPRQTKVVSH-SSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT- 2052 (2102)
T ss_pred CcceEEEEeeccccc--cccC--CCCCeEEEEECCCCcccccccCC-CCCCCcccceeeeecCCCCCCceEEEEEecCc-
Confidence 589999999999998 3344 49999999999766889999999 89999999999998876456789999999993
Q ss_pred CCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccE---EEEEEEEccC
Q 021710 98 ETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGK---IRVKLVLNGR 151 (308)
Q Consensus 98 ~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~---L~v~v~~~~~ 151 (308)
. .++.+|.+.|+|.++..+. ....||+|.+ +++..|+ |.|++.|.++
T Consensus 2053 f-~kd~~G~~~i~l~~vv~~~-----~~~~~~~L~~-~~~k~G~~~~~~~e~~w~~~ 2102 (2102)
T PLN03200 2053 F-GKSSLGKVTIQIDRVVMEG-----TYSGEYSLNP-ESNKDGSSRTLEIEFQWSNR 2102 (2102)
T ss_pred c-CCCCCceEEEEHHHHhcCc-----eeeeeeecCc-ccccCCCcceEEEEEEecCC
Confidence 3 5669999999999999755 3468999974 4556787 9999999753
No 93
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.58 E-value=3.1e-14 Score=115.81 Aligned_cols=96 Identities=28% Similarity=0.404 Sum_probs=79.9
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEe-eeC-CCCCceEEEEE
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLP-ITH-SVRESVLTLEI 91 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~-l~~-~~~~~~L~l~V 91 (308)
...|+|+|++|++|...+..+ .+||||++.+.+ ..+.+|+++++ +.||+|||+|.|. +.. .+.+..|.|+|
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~--~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~Wne~f~f~~~~~~~~~~~~l~~~v 90 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANG--LSDPYVKLNLLPGASKATKLRTKTVHK-TRNPEFNETLTYYGITEEDIQRKTLRLLV 90 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCC--CCCceEEEEEecCCCCCCceeeeeecC-CCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence 478999999999999888765 499999999853 24789999998 8999999999996 332 23456899999
Q ss_pred EeccCCCCCCceeeeEEEeCcccccCC
Q 021710 92 FHSKLSETPKPLVGSVKFPLAHLVDSD 118 (308)
Q Consensus 92 ~d~~~~~~~d~lLG~~~ipL~~L~~~~ 118 (308)
||++. . .+++||++.|+|++|....
T Consensus 91 ~d~~~-~-~~~~iG~~~i~l~~l~~~~ 115 (123)
T cd04035 91 LDEDR-F-GNDFLGETRIPLKKLKPNQ 115 (123)
T ss_pred EEcCC-c-CCeeEEEEEEEcccCCCCc
Confidence 99984 4 7899999999999998643
No 94
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=5e-14 Score=137.59 Aligned_cols=126 Identities=21% Similarity=0.341 Sum_probs=104.5
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC--ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEEe
Q 021710 17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA--YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIFH 93 (308)
Q Consensus 17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~--~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~d 93 (308)
+...|+|+|++|++|...+ .++ .+||||++++.++ .+.+|++.++ ++||+|||+|.|.|... +...+|.|.|||
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d-~~g-~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~ 241 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKD-RGG-TSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEELSNRVLHLSVYD 241 (421)
T ss_pred cCCEEEEEEEEecCCCccc-CCC-CCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHhccCEEEEEEEe
Confidence 4578999999999999988 443 6999999999773 5899999998 99999999999997643 678899999999
Q ss_pred ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC---CCCccEEEEEEEEccC
Q 021710 94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS---GRPQGKIRVKLVLNGR 151 (308)
Q Consensus 94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s---g~~~G~L~v~v~~~~~ 151 (308)
.| +..++++||++.++|..+..... ...|..|.... ....|+|.++++|.+.
T Consensus 242 ~d-rfsr~~~iGev~~~l~~~~~~~~-----~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~ 296 (421)
T KOG1028|consen 242 FD-RFSRHDFIGEVILPLGEVDLLST-----TLFWKDLQPSSTDSEELAGELLLSLCYLPT 296 (421)
T ss_pred cC-CcccccEEEEEEecCcccccccc-----ceeeeccccccCCcccccceEEEEEEeecC
Confidence 99 57899999999999998876543 25799997642 2224899999999874
No 95
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.51 E-value=1.7e-13 Score=109.29 Aligned_cols=89 Identities=18% Similarity=0.361 Sum_probs=73.7
Q ss_pred EEEEEeecCCCCCCCCCCCCCcEEEEEEcCC-----ceEEEEeecCCCCCCccccEEEEeeeCC---CCCceEEEEEEec
Q 021710 23 ITIICAKHLKNVNWRNGGDLKPYVVFYVDPA-----YRLATQSDDSGSTRPVWNERFTLPITHS---VRESVLTLEIFHS 94 (308)
Q Consensus 23 VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~-----~k~kT~v~k~gt~nP~WnE~f~f~l~~~---~~~~~L~l~V~d~ 94 (308)
+-+++|++|+..+..+. +||||++++... .+++|+++++ +.||+|| +|.|.+..- .....|.|+|||+
T Consensus 4 ~~~i~a~~L~~~d~~~~--~DPyv~v~~~~~~~~~~~~~kT~vi~~-t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~ 79 (110)
T cd04047 4 ELQFSGKKLDKKDFFGK--SDPFLEISRQSEDGTWVLVYRTEVIKN-TLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDY 79 (110)
T ss_pred EEEEEeCCCCCCCCCCC--CCeeEEEEEECCCCCEEEEEeeeEecc-CCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEe
Confidence 44679999999998775 999999998653 3689999998 8999999 788875431 1257899999999
Q ss_pred cCCCCCCceeeeEEEeCccccc
Q 021710 95 KLSETPKPLVGSVKFPLAHLVD 116 (308)
Q Consensus 95 ~~~~~~d~lLG~~~ipL~~L~~ 116 (308)
+ ..++|++||++.++|++|..
T Consensus 80 d-~~~~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 80 D-SSGKHDLIGEFETTLDELLK 100 (110)
T ss_pred C-CCCCCcEEEEEEEEHHHHhc
Confidence 8 46789999999999999984
No 96
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.48 E-value=1.5e-13 Score=102.79 Aligned_cols=83 Identities=28% Similarity=0.513 Sum_probs=69.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCc--eEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710 21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAY--RLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE 98 (308)
Q Consensus 21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~--k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~ 98 (308)
|+|+|++|++|...+..+ ..+|||++.+.... +.+|+++++ +.+|.|||+|.|.+... ....|.|+|||++. .
T Consensus 1 L~v~I~~a~~L~~~~~~~--~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~-~~~~l~~~V~~~~~-~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNG--KPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDP-DLDSLSFEVWDKDS-F 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTS--SBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHG-CGTEEEEEEEEETS-S
T ss_pred CEEEEEEEECCCCcccCC--cccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecc-cccceEEEEEECCC-C
Confidence 789999999999877555 49999999998754 499999998 89999999999997654 34459999999983 5
Q ss_pred CCCceeeeEE
Q 021710 99 TPKPLVGSVK 108 (308)
Q Consensus 99 ~~d~lLG~~~ 108 (308)
..+++||++.
T Consensus 76 ~~~~~iG~~~ 85 (85)
T PF00168_consen 76 GKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEE
T ss_pred CCCCEEEEEC
Confidence 5699999874
No 97
>PLN02270 phospholipase D alpha
Probab=99.45 E-value=9.1e-13 Score=134.99 Aligned_cols=126 Identities=21% Similarity=0.310 Sum_probs=104.4
Q ss_pred cccEEEEEEEEeecCCCCCC----------------CCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeC
Q 021710 17 ITHDLEITIICAKHLKNVNW----------------RNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITH 80 (308)
Q Consensus 17 ~~~~L~VtIisAk~L~~~~~----------------~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~ 80 (308)
..++|+|+|++|++|++.+. .+++.+||||+|.+...++.||+++.+...||+|||+|.+.+..
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah 85 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH 85 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc
Confidence 46899999999999986310 11125799999999998999999998745699999999999987
Q ss_pred CCCCceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC-c--cEEEEEEEEccC
Q 021710 81 SVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP-Q--GKIRVKLVLNGR 151 (308)
Q Consensus 81 ~~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~-~--G~L~v~v~~~~~ 151 (308)
. ...|.|.|.|.+ .....+||.+.||+.+|+.+... .+||+|.+.++++ + -+|+|+++|.+.
T Consensus 86 ~--~~~v~f~vkd~~--~~g~~~ig~~~~p~~~~~~g~~i-----~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 86 M--ASNIIFTVKDDN--PIGATLIGRAYIPVEEILDGEEV-----DRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred C--cceEEEEEecCC--ccCceEEEEEEEEHHHhcCCCcc-----ccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 4 578999999988 34677999999999999986544 5899999998886 2 389999999875
No 98
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.8e-13 Score=134.77 Aligned_cols=119 Identities=18% Similarity=0.356 Sum_probs=97.2
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS 97 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~ 97 (308)
...+++||++|.+|..++..++ +||||++.++. .+.+|+++.. .+||+|||+|+|.++++ ...|+++|||++..
T Consensus 294 sakitltvlcaqgl~akdktg~--sdpyvt~qv~k-tkrrtrti~~-~lnpvw~ekfhfechns--tdrikvrvwded~d 367 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGK--SDPYVTAQVGK-TKRRTRTIHQ-ELNPVWNEKFHFECHNS--TDRIKVRVWDEDND 367 (1283)
T ss_pred ceeeEEeeeecccceecccCCC--CCCcEEEeecc-cchhhHhhhh-ccchhhhhheeeeecCC--CceeEEEEecCccc
Confidence 3578999999999999998875 99999999996 7899999987 89999999999999984 67899999998732
Q ss_pred C----------CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCC--CccEEEEEEEEc
Q 021710 98 E----------TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGR--PQGKIRVKLVLN 149 (308)
Q Consensus 98 ~----------~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~--~~G~L~v~v~~~ 149 (308)
. ..|+|||+..|.+..|.. ..+.||.|.....+ ..|-|++.|.+.
T Consensus 368 lksklrqkl~resddflgqtvievrtlsg-------emdvwynlekrtdksavsgairlhisve 424 (1283)
T KOG1011|consen 368 LKSKLRQKLTRESDDFLGQTVIEVRTLSG-------EMDVWYNLEKRTDKSAVSGAIRLHISVE 424 (1283)
T ss_pred HHHHHHHHhhhcccccccceeEEEEeccc-------chhhhcchhhccchhhccceEEEEEEEE
Confidence 1 478899999999888754 33689999765444 467666555543
No 99
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.37 E-value=1.5e-12 Score=129.66 Aligned_cols=121 Identities=19% Similarity=0.233 Sum_probs=107.4
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710 19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE 98 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~ 98 (308)
..|.|+|.+||||...+..+ ..||||+|.+|....+||.++.+ ++.|.|.|+|.|.|+.. ...|.|-|||+| .
T Consensus 5 ~sl~vki~E~knL~~~~~~g--~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~--F~~l~fYv~D~d--~ 77 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSG--MRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRT--FRYLSFYVWDRD--L 77 (800)
T ss_pred cceeEEEeecccCCCCCCCC--CcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcc--eeeEEEEEeccc--c
Confidence 56899999999999998776 49999999999989999999999 99999999999999984 567999999999 5
Q ss_pred CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeC--CCCCCccEEEEEEEEccC
Q 021710 99 TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR--PSGRPQGKIRVKLVLNGR 151 (308)
Q Consensus 99 ~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~--~sg~~~G~L~v~v~~~~~ 151 (308)
.+|+.||.+.|.-++|....+. ..||.|.. ++.+++|+|++++.+.+.
T Consensus 78 ~~D~~IGKvai~re~l~~~~~~-----d~W~~L~~VD~dsEVQG~v~l~l~~~e~ 127 (800)
T KOG2059|consen 78 KRDDIIGKVAIKREDLHMYPGK-----DTWFSLQPVDPDSEVQGKVHLELALTEA 127 (800)
T ss_pred ccccccceeeeeHHHHhhCCCC-----ccceeccccCCChhhceeEEEEEEeccc
Confidence 7999999999999999876543 58999974 567889999999999885
No 100
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.37 E-value=8.7e-12 Score=95.18 Aligned_cols=94 Identities=24% Similarity=0.444 Sum_probs=79.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC--ceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710 20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA--YRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS 97 (308)
Q Consensus 20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~--~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~ 97 (308)
.|.|+|+++++|....... ..+|||++.+... ...+|+++.+ +.+|.|||+|.|.+.... ...|.|+||+.+.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~--~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~-~~~l~i~v~~~~~- 75 (101)
T smart00239 1 TLTVKIISARNLPKKDKKG--KSDPYVKVSLDGDPKEKKKTKVVKN-TLNPVWNETFEFEVPPPE-LAELEIEVYDKDR- 75 (101)
T ss_pred CeEEEEEEeeCCCCCCCCC--CCCceEEEEEeCCccceEeeeEecC-CCCCcccceEEEEecCcc-cCEEEEEEEecCC-
Confidence 3789999999998876544 4899999999874 5899999988 779999999999998742 7889999999883
Q ss_pred CCCCceeeeEEEeCcccccCC
Q 021710 98 ETPKPLVGSVKFPLAHLVDSD 118 (308)
Q Consensus 98 ~~~d~lLG~~~ipL~~L~~~~ 118 (308)
...+.+||.+.++|.++....
T Consensus 76 ~~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 76 FGRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred ccCCceeEEEEEEHHHcccCc
Confidence 446889999999999987643
No 101
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.37 E-value=8.6e-12 Score=94.50 Aligned_cols=90 Identities=27% Similarity=0.536 Sum_probs=76.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCCC
Q 021710 21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETP 100 (308)
Q Consensus 21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~ 100 (308)
|.|.|++|++|....... ..++||++.+......+|+++.+ +.||.|||.|.|.+... ....|.|+||+.+. ...
T Consensus 1 l~v~i~~~~~l~~~~~~~--~~~~~v~v~~~~~~~~~T~~~~~-~~~P~w~~~~~~~~~~~-~~~~l~i~v~~~~~-~~~ 75 (102)
T cd00030 1 LRVTVIEARNLPAKDLNG--KSDPYVKVSLGGKQKFKTKVVKN-TLNPVWNETFEFPVLDP-ESDTLTVEVWDKDR-FSK 75 (102)
T ss_pred CEEEEEeeeCCCCcCCCC--CCCcEEEEEeccCceEecceeCC-CCCCcccceEEEEccCC-CCCEEEEEEEecCC-CCC
Confidence 579999999998765554 49999999998657889999987 89999999999999863 35789999999883 456
Q ss_pred CceeeeEEEeCcccc
Q 021710 101 KPLVGSVKFPLAHLV 115 (308)
Q Consensus 101 d~lLG~~~ipL~~L~ 115 (308)
+.+||++.+++.++.
T Consensus 76 ~~~ig~~~~~l~~l~ 90 (102)
T cd00030 76 DDFLGEVEIPLSELL 90 (102)
T ss_pred CceeEEEEEeHHHhh
Confidence 889999999999998
No 102
>PLN02223 phosphoinositide phospholipase C
Probab=99.35 E-value=1.2e-11 Score=122.21 Aligned_cols=118 Identities=16% Similarity=0.386 Sum_probs=91.1
Q ss_pred ccEEEEEEEEeecCC-C----CCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEE
Q 021710 18 THDLEITIICAKHLK-N----VNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLT 88 (308)
Q Consensus 18 ~~~L~VtIisAk~L~-~----~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~ 88 (308)
..+|.|+|+++.++. . .+... ..||||+|.+.+ ..+.+|++..+ +.||+|||+|.|.|..+ +-..|.
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s--~~DpyV~VeI~Gvp~D~~~~kT~v~nN-g~nPvWne~F~F~i~~P-ELAlLr 483 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLS--KPDLYVRISIAGVPHDEKIMKTTVKNN-EWKPTWGEEFTFPLTYP-DLALIS 483 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCC--CCCeEEEEEEeeccCCcceeEEEeCCC-CcCceecceeEEEEEcc-CceEEE
Confidence 478999999999873 1 12222 489999999964 24667765554 89999999999999765 466799
Q ss_pred EEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC--ccEEEEEEEE
Q 021710 89 LEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP--QGKIRVKLVL 148 (308)
Q Consensus 89 l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~--~G~L~v~v~~ 148 (308)
|+|+|+|. ...++|||+..||++.|..+ .++++|++..|+. .-+|.+++.|
T Consensus 484 f~V~D~D~-~~~ddfiGQ~~LPv~~Lr~G--------yR~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 484 FEVYDYEV-STADAFCGQTCLPVSELIEG--------IRAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred EEEEecCC-CCCCcEEEEEecchHHhcCC--------ceeEeccCCCcCCCCCceEEEEEEe
Confidence 99999983 46789999999999999875 3778999887775 3466666655
No 103
>PLN02952 phosphoinositide phospholipase C
Probab=99.31 E-value=3.1e-11 Score=121.51 Aligned_cols=118 Identities=16% Similarity=0.312 Sum_probs=92.5
Q ss_pred ccEEEEEEEEeecCCCC------CCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceE
Q 021710 18 THDLEITIICAKHLKNV------NWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVL 87 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~------~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L 87 (308)
...|.|+|+++.+|... +... ..||||+|.+.+ ..+.+|+++++ +.||+|||+|.|.+..+ +-..|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~--~~D~yV~V~i~G~p~D~~~~kTkvi~n-N~nPvWnE~F~F~i~~P-ELAll 544 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYS--PPDFYTKMYIVGVPADNAKKKTKIIED-NWYPAWNEEFSFPLTVP-ELALL 544 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccC--CCCceEEEEEeccCCCCcceeeeeccC-CCCcccCCeeEEEEEcC-CccEE
Confidence 47899999999887421 1111 358999999864 36789999998 69999999999998864 45679
Q ss_pred EEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEE
Q 021710 88 TLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVL 148 (308)
Q Consensus 88 ~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~ 148 (308)
.|+|||++. ...++|||++.|||+.|..+ .+|++|++..|+..+.+.|-|+|
T Consensus 545 rf~V~D~D~-~~~ddfiGq~~lPv~~Lr~G--------yR~VpL~~~~G~~l~~a~Llv~f 596 (599)
T PLN02952 545 RIEVREYDM-SEKDDFGGQTCLPVSELRPG--------IRSVPLHDKKGEKLKNVRLLMRF 596 (599)
T ss_pred EEEEEecCC-CCCCCeEEEEEcchhHhcCC--------ceeEeCcCCCCCCCCCEEEEEEE
Confidence 999999883 56789999999999999875 37899998888876655555444
No 104
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.28 E-value=2.6e-11 Score=100.47 Aligned_cols=97 Identities=20% Similarity=0.255 Sum_probs=78.5
Q ss_pred EEEEEEEEeecCCCCCC--CCCCCCCcEEEEEEcC--CceEEEEeecCCCCC--CccccEEEEeeeCC------------
Q 021710 20 DLEITIICAKHLKNVNW--RNGGDLKPYVVFYVDP--AYRLATQSDDSGSTR--PVWNERFTLPITHS------------ 81 (308)
Q Consensus 20 ~L~VtIisAk~L~~~~~--~~~~~~dPYv~v~l~~--~~k~kT~v~k~gt~n--P~WnE~f~f~l~~~------------ 81 (308)
+|+|+|.+|+++...+. .+...+|+||++|+.. ..+++|.|..+ +.| |.||+.|.|++...
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyr-slnG~~~FNwRfvF~~~~~~~~~~~~~~~~~ 79 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYR-SLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE 79 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEe-cCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence 48999999999654332 3312499999999986 47899999998 888 99999999987641
Q ss_pred ----------CCCceEEEEEEeccCCCCCCceeeeEEEeCcccccCC
Q 021710 82 ----------VRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSD 118 (308)
Q Consensus 82 ----------~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~ 118 (308)
+....|.|+|||.| ....|++||++.++|..+....
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D-~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDND-KFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccccCcceEecCcEEEEEEEECc-ccCCCCcceEEEEEhhhccccc
Confidence 23468999999999 4678999999999999987654
No 105
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.25 E-value=1.7e-11 Score=96.65 Aligned_cols=86 Identities=22% Similarity=0.413 Sum_probs=73.1
Q ss_pred EEEEEEEeecCCCCC---CCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710 21 LEITIICAKHLKNVN---WRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS 97 (308)
Q Consensus 21 L~VtIisAk~L~~~~---~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~ 97 (308)
|+|+|.++++|.... ++. .+++||++.++...+.||++ +.||.|||+|.|++.. ..++.|.|||+.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~--~~etyV~IKved~~kaRTr~----srnd~WnE~F~i~Vdk---~nEiel~VyDk~-- 69 (109)
T cd08689 1 LTITITSARDVDHIASPRFSK--RPETYVSIKVEDVERARTKP----SRNDRWNEDFEIPVEK---NNEEEVIVYDKG-- 69 (109)
T ss_pred CEEEEEEEecCccccchhhcc--CCCcEEEEEECCEEEEeccC----CCCCcccceEEEEecC---CcEEEEEEEeCC--
Confidence 689999999999887 344 49999999999877899988 4799999999999953 678999999987
Q ss_pred CCCCceeeeEEEeCcccccC
Q 021710 98 ETPKPLVGSVKFPLAHLVDS 117 (308)
Q Consensus 98 ~~~d~lLG~~~ipL~~L~~~ 117 (308)
....-.||...|.|++|.+.
T Consensus 70 ~~~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 70 GDQPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred CCeecceeeehhhHHHHHHH
Confidence 33556899999999998763
No 106
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.24 E-value=5.9e-11 Score=119.85 Aligned_cols=121 Identities=16% Similarity=0.303 Sum_probs=97.4
Q ss_pred cEEEEEEEEeecCCC-CCC--CCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEE
Q 021710 19 HDLEITIICAKHLKN-VNW--RNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEI 91 (308)
Q Consensus 19 ~~L~VtIisAk~L~~-~~~--~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V 91 (308)
.+|.|+|+++.++.. .+. ++. ..||||.|.+.+ ..+.+|+++++++.||.|+|+|+|.|.-+ +-..|.|.|
T Consensus 616 ~tL~IkI~sGq~~~~~~~~~~~~~-~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vP-ELAliRF~V 693 (746)
T KOG0169|consen 616 KTLKIKIISGQGWLPDFGKTKFGE-ISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVP-ELALIRFEV 693 (746)
T ss_pred ceeEEEEEecCcccCCCCCCcccc-cCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEecc-ceeEEEEEE
Confidence 389999999996532 222 223 589999999865 35889998888899999999999999875 457899999
Q ss_pred EeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC--ccEEEEEEEEcc
Q 021710 92 FHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP--QGKIRVKLVLNG 150 (308)
Q Consensus 92 ~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~--~G~L~v~v~~~~ 150 (308)
+|.+. ..+|+|+|+.+||+.+|..+ .+.++|.+..|.. .-+|.|+|++.+
T Consensus 694 ~d~d~-~~~ddF~GQ~tlP~~~L~~G--------yRhVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 694 HDYDY-IGKDDFIGQTTLPVSELRQG--------YRHVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred EecCC-CCcccccceeeccHHHhhCc--------eeeeeecCCCCccccceeEEEEEEEec
Confidence 99994 67899999999999999874 3668888877764 578888888865
No 107
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.22 E-value=1.2e-10 Score=117.12 Aligned_cols=120 Identities=11% Similarity=0.280 Sum_probs=92.7
Q ss_pred ccEEEEEEEEeecCCC----CCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEE
Q 021710 18 THDLEITIICAKHLKN----VNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTL 89 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~----~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l 89 (308)
..+|.|+|+++.++.. .........||||+|.+.+ ..+.+|++..+ +.||+|||+|.|.+..+ +-..|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n-~~nP~Wneef~F~l~vP-ELAllRf 545 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYD-TWTPIWNKEFIFPLAVP-ELALLRV 545 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCC-CCCCccCCeeEEEEEcC-ceeEEEE
Confidence 5789999999998631 1111111479999999854 34678998776 89999999999998764 5678999
Q ss_pred EEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC--ccEEEEEEEE
Q 021710 90 EIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP--QGKIRVKLVL 148 (308)
Q Consensus 90 ~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~--~G~L~v~v~~ 148 (308)
+|+|++. ...++|||+..|||..|..+ .+.++|++..|.. .-+|.+++.|
T Consensus 546 ~V~d~d~-~~~ddfiGQ~~lPv~~Lr~G--------yR~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 546 EVHEHDI-NEKDDFGGQTCLPVSEIRQG--------IHAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEEECCC-CCCCCEEEEEEcchHHhhCc--------cceEeccCCCcCCCCCCeeEEEEEe
Confidence 9999883 46899999999999999875 3678998887765 4577777766
No 108
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.22 E-value=2.2e-10 Score=115.08 Aligned_cols=120 Identities=18% Similarity=0.293 Sum_probs=92.7
Q ss_pred ccEEEEEEEEeecCC----CCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEE
Q 021710 18 THDLEITIICAKHLK----NVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTL 89 (308)
Q Consensus 18 ~~~L~VtIisAk~L~----~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l 89 (308)
..+|.|+|+++.++. ..........||||+|.+.+ ..+.+|+++++ +.||+|||+|.|.+..+ +-..|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~n-n~nP~W~e~f~F~i~~P-eLAllRf 528 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLED-NWIPAWDEVFEFPLTVP-ELALLRL 528 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCC-CCCcccCCeeEEEEEcC-ceeEEEE
Confidence 468999999998742 21111111479999999963 35789999998 58999999999998764 4578999
Q ss_pred EEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC--ccEEEEEEEE
Q 021710 90 EIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP--QGKIRVKLVL 148 (308)
Q Consensus 90 ~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~--~G~L~v~v~~ 148 (308)
.|+|+|. ...++|||+..|||+.|..+ .+.++|++..|.. .-+|.|.|.|
T Consensus 529 ~V~d~D~-~~~ddfigq~~lPv~~Lr~G--------yR~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 529 EVHEYDM-SEKDDFGGQTCLPVWELSQG--------IRAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEEECCC-CCCCcEEEEEEcchhhhhCc--------cceEEccCCCcCCCCCeeEEEEEEe
Confidence 9999873 46789999999999999875 3678998887765 4477777765
No 109
>PLN02228 Phosphoinositide phospholipase C
Probab=99.19 E-value=3.1e-10 Score=113.64 Aligned_cols=123 Identities=15% Similarity=0.279 Sum_probs=96.0
Q ss_pred ccEEEEEEEEeecCCC---CCCC-CCCCCCcEEEEEEcC----CceEEEEeecCCCCCCcc-ccEEEEeeeCCCCCceEE
Q 021710 18 THDLEITIICAKHLKN---VNWR-NGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVW-NERFTLPITHSVRESVLT 88 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~---~~~~-~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~W-nE~f~f~l~~~~~~~~L~ 88 (308)
...|+|+|+++.+|.. .... .....||||+|.+.+ ..+.+|+++++ +.||+| ||+|.|.+..+ +-..|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n-~~nP~W~~e~f~F~~~~p-ELA~lR 507 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVD-QWFPIWGNDEFLFQLRVP-ELALLW 507 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCC-CCCceECCCeEEEEEEcC-ceeEEE
Confidence 4589999999998721 1111 001379999999864 35679999987 689999 99999998764 457899
Q ss_pred EEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC--ccEEEEEEEEccC
Q 021710 89 LEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP--QGKIRVKLVLNGR 151 (308)
Q Consensus 89 l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~--~G~L~v~v~~~~~ 151 (308)
|.|+|++ ....++|||++.|||+.|..+ .+.++|.+..|+. ..+|.|+|.+.+.
T Consensus 508 f~V~D~d-~~~~d~figq~~lPv~~Lr~G--------YR~VpL~~~~G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 508 FKVQDYD-NDTQNDFAGQTCLPLPELKSG--------VRAVRLHDRAGKAYKNTRLLVSFALDPP 563 (567)
T ss_pred EEEEeCC-CCCCCCEEEEEEcchhHhhCC--------eeEEEccCCCCCCCCCeEEEEEEEEcCc
Confidence 9999987 355789999999999999764 4678998888775 5679999998765
No 110
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.19 E-value=1.3e-10 Score=121.47 Aligned_cols=124 Identities=24% Similarity=0.349 Sum_probs=101.6
Q ss_pred ccEEEEEEEEeecCCCCCC-CCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccC
Q 021710 18 THDLEITIICAKHLKNVNW-RNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKL 96 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~-~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~ 96 (308)
-++|+|+|.+|++|+..+. .++ ..|||+++.+......||++.++ +.||+|||+|.+.|.. -...|.|+|||.+
T Consensus 435 IGVv~vkI~sa~~lk~~d~~i~~-~vDpyit~~~~~r~~gkT~v~~n-t~nPvwNEt~Yi~lns--~~d~L~LslyD~n- 509 (1227)
T COG5038 435 IGVVEVKIKSAEGLKKSDSTING-TVDPYITVTFSDRVIGKTRVKKN-TLNPVWNETFYILLNS--FTDPLNLSLYDFN- 509 (1227)
T ss_pred eEEEEEEEeeccCcccccccccC-CCCceEEEEeccccCCccceeec-cCCccccceEEEEecc--cCCceeEEEEecc-
Confidence 4899999999999998772 333 79999999987656779999998 9999999999999986 4778999999977
Q ss_pred CCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEccC
Q 021710 97 SETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGR 151 (308)
Q Consensus 97 ~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~~ 151 (308)
....|+++|++.+.|..|....... ...+++++ +.+..|.|...++|-+.
T Consensus 510 ~~~sd~vvG~~~l~L~~L~~~~~~~----ne~~e~~~-~~k~vGrL~yDl~ffp~ 559 (1227)
T COG5038 510 SFKSDKVVGSTQLDLALLHQNPVKK----NELYEFLR-NTKNVGRLTYDLRFFPV 559 (1227)
T ss_pred ccCCcceeeeEEechHHhhhccccc----cceeeeec-cCccceEEEEeeeeecc
Confidence 3678999999999999988765443 34566643 56678999998888664
No 111
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.14 E-value=1.6e-10 Score=120.87 Aligned_cols=124 Identities=17% Similarity=0.305 Sum_probs=100.5
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS 97 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~ 97 (308)
.+.|+|.++++.||+..+..+. +||||++.+.....++|+++++ ++||+|||.|.+.|.+. ....|.|.|+||+.
T Consensus 1039 sG~l~I~~~~~~nl~~~d~ng~--sDpfv~~~ln~k~vyktkv~Kk-tlNPvwNEe~~i~v~~r-~~D~~~i~v~Dwd~- 1113 (1227)
T COG5038 1039 SGYLTIMLRSGENLPSSDENGY--SDPFVKLFLNEKSVYKTKVVKK-TLNPVWNEEFTIEVLNR-VKDVLTINVNDWDS- 1113 (1227)
T ss_pred cCcEEEEEeccCCCcccccCCC--CCceEEEEecceecccccchhc-cCCCCccccceEeeecc-ccceEEEEEeeccc-
Confidence 5889999999999999998875 9999999999877999999999 99999999999999864 35679999999994
Q ss_pred CCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCC-CCCccEEEEEEEEccC
Q 021710 98 ETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPS-GRPQGKIRVKLVLNGR 151 (308)
Q Consensus 98 ~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~s-g~~~G~L~v~v~~~~~ 151 (308)
..++++||.+.|+|+.|..+.... ....|..+. ....|.++..+.++.+
T Consensus 1114 ~~knd~lg~~~idL~~l~~~~~~n-----~~i~ldgk~~~~~~g~~~~~~~~r~~ 1163 (1227)
T COG5038 1114 GEKNDLLGTAEIDLSKLEPGGTTN-----SNIPLDGKTFIVLDGTLHPGFNFRSK 1163 (1227)
T ss_pred CCCccccccccccHhhcCcCCccc-----eeeeccCcceEecccEeecceecchh
Confidence 668999999999999998764331 223332211 2346788887777765
No 112
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=4.3e-10 Score=110.08 Aligned_cols=92 Identities=21% Similarity=0.328 Sum_probs=78.0
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF 92 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~ 92 (308)
.+.|+|.|++|++|+..+..+ ..|+||++++.. ..+.+|.+.++ +.||+|||+|.|.|... +....|.|+||
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~--~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv~nesf~F~vp~~~l~~~~l~l~V~ 373 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGG--LSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPVFNETFVFDVPPEQLAEVSLELTVW 373 (421)
T ss_pred CCeEEEEEEEecCCCcccCCC--CCCccEEEEEecCCceeeeeeeecccC-CCCCcccccEEEeCCHHHhheeEEEEEEE
Confidence 589999999999999888766 489999999854 25788998888 99999999999998753 45678999999
Q ss_pred eccCCCCCCceeeeEEEeCcc
Q 021710 93 HSKLSETPKPLVGSVKFPLAH 113 (308)
Q Consensus 93 d~~~~~~~d~lLG~~~ipL~~ 113 (308)
|++ ....+++||.+.+....
T Consensus 374 d~d-~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 374 DHD-TLGSNDLIGRCILGSDS 393 (421)
T ss_pred Ecc-cccccceeeEEEecCCC
Confidence 999 46778899998887664
No 113
>PLN02352 phospholipase D epsilon
Probab=99.06 E-value=1.4e-09 Score=111.50 Aligned_cols=120 Identities=19% Similarity=0.239 Sum_probs=94.1
Q ss_pred CcccEEEEEEEEeecCCCC----CCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEE
Q 021710 16 PITHDLEITIICAKHLKNV----NWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEI 91 (308)
Q Consensus 16 ~~~~~L~VtIisAk~L~~~----~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V 91 (308)
...++|++||.+|+.+... ...+. ..+|||+|.++..++.|| .+ ..||+|||+|.+.+... .+..|.|.|
T Consensus 7 ~lhg~l~~~i~~~~~~~~~~~~~~~~~~-~~~~y~tv~~~~~~v~rt---~~-~~~p~w~e~f~i~~ah~-~~~~~~f~v 80 (758)
T PLN02352 7 FFHGTLEATIFDATPYTPPFPFNCIFLN-GKATYVTIKIGNKKVAKT---SH-EYDRVWNQTFQILCAHP-LDSTITITL 80 (758)
T ss_pred ccccceEEEEEEeeehhhcccccccccC-CCCceEEEEeCCcEEecC---CC-CCCCccccceeEEeeee-cCCcEEEEE
Confidence 3468999999999854322 11122 249999999998888888 44 67999999999999874 235789999
Q ss_pred EeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC-cc-EEEEEEEEccC
Q 021710 92 FHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP-QG-KIRVKLVLNGR 151 (308)
Q Consensus 92 ~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~-~G-~L~v~v~~~~~ 151 (308)
.|. ..+||.+.||+.+|+.+.. ....||+|.+.++++ .| +|+|+++|.+.
T Consensus 81 k~~------~~~ig~~~~p~~~~~~g~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 132 (758)
T PLN02352 81 KTK------CSILGRFHIQAHQIVTEAS----FINGFFPLIMENGKPNPELKLRFMLWFRPA 132 (758)
T ss_pred ecC------CeEEEEEEEEHHHhhCCCc----ccceEEEcccCCCCCCCCCEEEEEEEEEEh
Confidence 882 4699999999999998643 246999999988886 44 99999999885
No 114
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.00 E-value=3.2e-09 Score=107.46 Aligned_cols=121 Identities=15% Similarity=0.315 Sum_probs=94.0
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccc-cEEEEeeeCCCCCceEEEEEE
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWN-ERFTLPITHSVRESVLTLEIF 92 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~Wn-E~f~f~l~~~~~~~~L~l~V~ 92 (308)
...|.|.|+.|++|...+.. ...|||+|.+-+ ..+++|+++.+|++||+|| |+|+|.|.++ +-..|.|.|+
T Consensus 1064 p~~lsv~vigaRHL~k~gr~---i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nP-e~A~lRF~V~ 1139 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLGRS---IACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNP-EFAFLRFVVY 1139 (1267)
T ss_pred ceEEEEEEeeccccccCCCC---ccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCC-ceEEEEEEEe
Confidence 47899999999999865432 367999999854 3567777776669999999 9999999886 5778999999
Q ss_pred eccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCC--CccEEEEEEEEccC
Q 021710 93 HSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGR--PQGKIRVKLVLNGR 151 (308)
Q Consensus 93 d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~--~~G~L~v~v~~~~~ 151 (308)
++|. .....||+++.+|++.|..+ .+..+|++.-.+ ...+|.|.|.+.+.
T Consensus 1140 eeDm-fs~~~FiaqA~yPv~~ik~G--------fRsVpLkN~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1140 EEDM-FSDPNFLAQATYPVKAIKSG--------FRSVPLKNGYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred cccc-cCCcceeeeeecchhhhhcc--------ceeeecccCchhhhhhhhheeeeEeccc
Confidence 9994 56667999999999998764 467888754221 25677777777664
No 115
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.97 E-value=1.1e-10 Score=116.71 Aligned_cols=126 Identities=23% Similarity=0.397 Sum_probs=98.5
Q ss_pred CcccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC------------------------------ceEEEEeecCCC
Q 021710 16 PITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA------------------------------YRLATQSDDSGS 65 (308)
Q Consensus 16 ~~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~------------------------------~k~kT~v~k~gt 65 (308)
++..-|.|.+..|++|.+++..+. +|||+.+.+-+. -.+-|.|.++ |
T Consensus 111 ~P~~~l~is~~~ak~l~akd~ngf--SdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~-T 187 (1103)
T KOG1328|consen 111 PPSVLLNISLLEAKDLIAKDVNGF--SDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKK-T 187 (1103)
T ss_pred CCcHHHHHHHHHhcCccccCCCCC--CChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccc-c
Confidence 345667788899999998887764 999998876321 1234777777 9
Q ss_pred CCCccccEEEEeeeCCCCCceEEEEEEeccCCC-----------------------------------CCCceeeeEEEe
Q 021710 66 TRPVWNERFTLPITHSVRESVLTLEIFHSKLSE-----------------------------------TPKPLVGSVKFP 110 (308)
Q Consensus 66 ~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~-----------------------------------~~d~lLG~~~ip 110 (308)
+||+|+|+|.|.|.+- ....++|.|||+|... ..|+|||.+.||
T Consensus 188 LnPkW~EkF~F~IeDv-~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNip 266 (1103)
T KOG1328|consen 188 LNPKWSEKFQFTIEDV-QTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIP 266 (1103)
T ss_pred CCcchhhheeeehhcc-ccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 9999999999999864 4668999999987431 348999999999
Q ss_pred CcccccCCCCCCCceeEEEEEeCCCC--CCccEEEEEEEEccC
Q 021710 111 LAHLVDSDSSEPTQYVRKLEVLRPSG--RPQGKIRVKLVLNGR 151 (308)
Q Consensus 111 L~~L~~~~~~~~~~~~~~~~L~~~sg--~~~G~L~v~v~~~~~ 151 (308)
|.+|-..+ ...||+|.-.+. +++|.+++++++..+
T Consensus 267 l~EiP~~G------ld~WFkLepRS~~S~VqG~~~LklwLsT~ 303 (1103)
T KOG1328|consen 267 LAEIPPDG------LDQWFKLEPRSDKSKVQGQVKLKLWLSTK 303 (1103)
T ss_pred hhcCCcch------HHHHhccCcccccccccceEEEEEEEeee
Confidence 99997643 258999976544 579999999999775
No 116
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.87 E-value=6.7e-09 Score=102.06 Aligned_cols=128 Identities=16% Similarity=0.247 Sum_probs=104.2
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCcccc-EEEEeeeC-CCCCceEEEEEEeccC
Q 021710 19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNE-RFTLPITH-SVRESVLTLEIFHSKL 96 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE-~f~f~l~~-~~~~~~L~l~V~d~~~ 96 (308)
+.|.|+|+.|++|+..+..+. ..|.||.+.+.. ..+||.|..+ ++||.||. .|.|.+.+ .+.+..|.|+++|++.
T Consensus 3 gkl~vki~a~r~lpvmdkasd-~tdafveik~~n-~t~ktdvf~k-slnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASD-LTDAFVEIKFAN-TTFKTDVFLK-SLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccccc-cchheeEEEecc-cceehhhhhh-hcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 678999999999998887765 689999999986 7899999999 99999995 69999986 3678899999999984
Q ss_pred CCCCCceeeeEEEeCcccccCCCC-----CCCceeEEEEEeCCCCCCccEEEEEEEEcc
Q 021710 97 SETPKPLVGSVKFPLAHLVDSDSS-----EPTQYVRKLEVLRPSGRPQGKIRVKLVLNG 150 (308)
Q Consensus 97 ~~~~d~lLG~~~ipL~~L~~~~~~-----~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~ 150 (308)
...++-||.+.|.|+.|.-.... .+.....||++.+.-...+|+|.|-|.+.-
T Consensus 80 -ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkvdl 137 (1169)
T KOG1031|consen 80 -YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKVDL 137 (1169)
T ss_pred -cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEEee
Confidence 56788999999999988653322 112346899998765556899888877643
No 117
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.71 E-value=2.9e-08 Score=80.95 Aligned_cols=106 Identities=21% Similarity=0.302 Sum_probs=78.2
Q ss_pred EEEEEEEeecCCCC---------CC--CCCCCCCcEEEEEEc---CCceEEEEeecCCCCCCccccEEEEeee-------
Q 021710 21 LEITIICAKHLKNV---------NW--RNGGDLKPYVVFYVD---PAYRLATQSDDSGSTRPVWNERFTLPIT------- 79 (308)
Q Consensus 21 L~VtIisAk~L~~~---------~~--~~~~~~dPYv~v~l~---~~~k~kT~v~k~gt~nP~WnE~f~f~l~------- 79 (308)
|.|.|++|.+|+.. ++ ......|+||++.+. .....+|+++-+ +..|+|+.++.|+++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVAr-SFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVAR-SFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhh-hcCCCccceEEEecccEEEcCC
Confidence 46888999998632 11 011137899999853 357889999998 999999999999876
Q ss_pred -C------CCCCceEEEEEEeccCCC---------CCCceeeeEEEeCcccccCCCCCCCceeEEEEE
Q 021710 80 -H------SVRESVLTLEIFHSKLSE---------TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEV 131 (308)
Q Consensus 80 -~------~~~~~~L~l~V~d~~~~~---------~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L 131 (308)
+ .++...+.|+|||++... .+|-+||.+.||+.+|+..... ...||++
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsG----itGW~pi 143 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSG----ITGWYPI 143 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccC----ccccccC
Confidence 1 135678999999987432 3566999999999999875433 1478864
No 118
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=98.62 E-value=2.5e-08 Score=94.82 Aligned_cols=128 Identities=20% Similarity=0.214 Sum_probs=99.3
Q ss_pred CcccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEc----CCceEEEEeecCCCCCCccccEEEEeeeCC----------
Q 021710 16 PITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVD----PAYRLATQSDDSGSTRPVWNERFTLPITHS---------- 81 (308)
Q Consensus 16 ~~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~----~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~---------- 81 (308)
.....|+++|+++.++...+-- . ..|-|+++.+- ...+.+|.++++ +.+|.|+|.|.+++...
T Consensus 364 l~d~elel~ivrg~~~pvp~gp-~-hld~fvr~efpl~nD~~qk~kt~vik~-t~SPdfde~fklni~rg~~~nr~fqR~ 440 (523)
T KOG3837|consen 364 LKDQELELAIVRGQKNPVPGGP-M-HLDQFVRLEFPLENDSRQKLKTDVIKV-TPSPDFDEDFKLNIRRGPGLNREFQRR 440 (523)
T ss_pred cchhHhHHHHhhcccCCCCCCc-h-hHHhhhcccccccccccccCccceeeC-CCCCCcccceeeeccCCCcccHHHHHH
Confidence 3456788999999888655432 1 47889888762 346889999998 99999999999998762
Q ss_pred CCCceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEccC
Q 021710 82 VRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGR 151 (308)
Q Consensus 82 ~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~~ 151 (308)
.....++|+|||+......|.|+|++.|.|..|.....+ ...++|++-..-..|+|.|+|++++.
T Consensus 441 fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei-----~e~~~l~DGRK~vGGkLevKvRiR~P 505 (523)
T KOG3837|consen 441 FKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEI-----CEYLPLKDGRKAVGGKLEVKVRIRQP 505 (523)
T ss_pred HHhcCeeEEEeeccccccccceeceeeeeehhhhcccch-----hhceeccccccccCCeeEEEEEEecc
Confidence 123468999999886667899999999999998776544 36788875444458999999999874
No 119
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.53 E-value=3.4e-08 Score=99.23 Aligned_cols=94 Identities=16% Similarity=0.303 Sum_probs=81.0
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC------ceEEEEeecCCCCCCccccEEEEeeeCC---CCCceEE
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA------YRLATQSDDSGSTRPVWNERFTLPITHS---VRESVLT 88 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~------~k~kT~v~k~gt~nP~WnE~f~f~l~~~---~~~~~L~ 88 (308)
...|.|.|+-|+++...+..+. +||||+|.+.+. ..++|+|++. |+||+|+|+|.|.|+.+ -+...|.
T Consensus 946 ~q~L~veVlhA~diipLD~NGl--SDPFVviEl~P~~~fp~v~~q~T~V~~r-tLnPVfDE~FeFsVp~e~c~te~Am~~ 1022 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGL--SDPFVVIELIPKFRFPAVPVQKTKVVSR-TLNPVFDETFEFSVPPEPCSTETAMLH 1022 (1103)
T ss_pred ccchhhhhhccccccccCCCCC--CCCeEEEEeccccccccchhhhhhhhhc-cccchhhhheeeecCccccccccceEE
Confidence 3678889999999998887765 999999999873 4789999999 99999999999999853 2466899
Q ss_pred EEEEeccCCCCCCceeeeEEEeCcccc
Q 021710 89 LEIFHSKLSETPKPLVGSVKFPLAHLV 115 (308)
Q Consensus 89 l~V~d~~~~~~~d~lLG~~~ipL~~L~ 115 (308)
|+|+|+|- ...++|-|++.+.|.++-
T Consensus 1023 FTVMDHD~-L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1023 FTVMDHDY-LRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred EEeeccce-ecccccchHHHHhhCCCC
Confidence 99999994 578899999999998874
No 120
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.49 E-value=1.9e-07 Score=93.77 Aligned_cols=111 Identities=14% Similarity=0.233 Sum_probs=83.7
Q ss_pred CCCcEEEEEEcCC---ceEEEEeecCCCCCCccccEEEEeeeCCC--------------CCceEEEEEEeccCCCCCCce
Q 021710 41 DLKPYVVFYVDPA---YRLATQSDDSGSTRPVWNERFTLPITHSV--------------RESVLTLEIFHSKLSETPKPL 103 (308)
Q Consensus 41 ~~dPYv~v~l~~~---~k~kT~v~k~gt~nP~WnE~f~f~l~~~~--------------~~~~L~l~V~d~~~~~~~d~l 103 (308)
.+|||+++..... ...+|++.++ +.+|.|||.|.|.+.... ....|++++|++......+.|
T Consensus 150 ~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~F 228 (800)
T KOG2059|consen 150 QCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVF 228 (800)
T ss_pred CCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhh
Confidence 4999999887542 2368999999 999999999999987530 134688999995534567999
Q ss_pred eeeEEEeCcccccCCCCCCCceeEEEEEeCC-CC------CCccEEEEEEEEccCCCCCCC
Q 021710 104 VGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP-SG------RPQGKIRVKLVLNGRPLPPPS 157 (308)
Q Consensus 104 LG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~-sg------~~~G~L~v~v~~~~~~~~pP~ 157 (308)
+|++++++..+.... ....||.|... +| ...|.|++++.+++.+..+.+
T Consensus 229 lGevrv~v~~~~~~s-----~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~Vlps~ 284 (800)
T KOG2059|consen 229 LGEVRVPVDVLRQKS-----SPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHVLPSQ 284 (800)
T ss_pred ceeEEeehhhhhhcc-----CccceEEEecCCCcccCCCCCCccceeeeEEeeeceeccHh
Confidence 999999999987322 23589999742 22 237999999999998765444
No 121
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=1.6e-06 Score=86.53 Aligned_cols=106 Identities=18% Similarity=0.278 Sum_probs=85.3
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEc------CCceEEEEeecCCCCCCccccEEEEeeeCC--CCCceEEE
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVD------PAYRLATQSDDSGSTRPVWNERFTLPITHS--VRESVLTL 89 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~------~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~--~~~~~L~l 89 (308)
...++|+|+.|.+|+.... +...|||.|.+- +++++.|++..+ +..|.+||+|.|.+.++ .+.-+|.|
T Consensus 1124 ehkvtvkvvaandlkwqts---gmFrPFVEV~ivGP~lsDKKRK~~TKtKsn-nWaPKyNEtF~f~Lg~e~~Pe~YEL~~ 1199 (1283)
T KOG1011|consen 1124 EHKVTVKVVAANDLKWQTS---GMFRPFVEVHIVGPHLSDKKRKFSTKTKSN-NWAPKYNETFHFFLGNEGGPEHYELQF 1199 (1283)
T ss_pred cceEEEEEEecccccchhc---cccccceEEEEecCcccchhhhccccccCC-CcCcccCceeEEEeccCCCCceEEEEE
Confidence 3678899999999986432 258999999984 257888888877 89999999999998764 34567899
Q ss_pred EEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeC
Q 021710 90 EIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLR 133 (308)
Q Consensus 90 ~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~ 133 (308)
.|.|..+ ...|+.||.+.++|+++...++ .-.|++|.+
T Consensus 1200 ~VKDYCF-AReDRvvGl~VlqL~~va~kGS-----~a~W~pLgr 1237 (1283)
T KOG1011|consen 1200 CVKDYCF-AREDRVVGLAVLQLRSVADKGS-----CACWVPLGR 1237 (1283)
T ss_pred eehhhee-ecccceeeeeeeehhhHhhcCc-----eeEeeeccc
Confidence 9999884 5678999999999999987643 358999965
No 122
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.28 E-value=6.5e-07 Score=94.10 Aligned_cols=107 Identities=20% Similarity=0.256 Sum_probs=83.9
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEe-eeCC-CCCceEEEE
Q 021710 17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLP-ITHS-VRESVLTLE 90 (308)
Q Consensus 17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~-l~~~-~~~~~L~l~ 90 (308)
..++|.|-|.-+|+|....- +. .+||||+.++.+ ..|.||+|+++ |.||+|||.+... +... +...+|.+.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqd-g~-~P~pyVK~YLlPdp~k~sKRKTKvvrk-t~~PTfnE~LvY~g~p~~~l~qReLQ~s 1598 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQD-GQ-DPDPYVKTYLLPDPRKTSKRKTKVVRK-TRNPTFNEMLVYDGFPKEILQQRELQVS 1598 (1639)
T ss_pred cCceEEEEhhhhcccccccC-CC-CCCcceeEEecCCchHhhhhhhccccc-cCCCchhhheeecCCchhhhhhheeeee
Confidence 35789999999999943321 22 699999999976 35899999999 9999999988776 3322 356789999
Q ss_pred EEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEe
Q 021710 91 IFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVL 132 (308)
Q Consensus 91 V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~ 132 (308)
||.... ...+.|+|.+.|+|.++.... ....||.|.
T Consensus 1599 Vls~~~-~~en~~lg~v~i~L~~~~l~k-----E~~~Wy~lg 1634 (1639)
T KOG0905|consen 1599 VLSNGG-LLENVFLGGVNIPLLKVDLLK-----ESVGWYNLG 1634 (1639)
T ss_pred eecccc-eeeeeeeeeeecchhhcchhh-----hhcceeecc
Confidence 999873 567889999999999986543 235899985
No 123
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=3.3e-07 Score=85.19 Aligned_cols=128 Identities=22% Similarity=0.267 Sum_probs=94.4
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEee--eCCCCCceEEEE
Q 021710 17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPI--THSVRESVLTLE 90 (308)
Q Consensus 17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l--~~~~~~~~L~l~ 90 (308)
.+..+.++|..|++|+..+..+. .|||+++.+.+ ..+.+|++..+ +.||+|+|+..... ........+.+.
T Consensus 91 ~~~~~~~tl~~a~~lk~~~~~~~--~d~~~~~~llpga~kl~slr~~t~~n-~lN~~w~etev~~~i~~~~~~~K~~Rk~ 167 (362)
T KOG1013|consen 91 ESRMLDTTLDRAKGLKPMDINGL--ADPYVKLHLLPGAGKLNSLRTKTTRN-TLNPEWNETEVYEGITDDDTHLKVLRKV 167 (362)
T ss_pred hhhhcceeechhcccchhhhhhh--cchHHhhhcccchhhhhhhhHHhhcc-CcCcceeccceecccccchhhhhhhhee
Confidence 45789999999999999988765 99999999976 24678888887 99999999866543 333445678888
Q ss_pred EEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC-------CCCCccEEEEEEEEccC
Q 021710 91 IFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP-------SGRPQGKIRVKLVLNGR 151 (308)
Q Consensus 91 V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~-------sg~~~G~L~v~v~~~~~ 151 (308)
|+|.+ ...+.+++|+.+|+|..|...... ....||.-..+ ..+.+|.|.+++.+...
T Consensus 168 vcdn~-~~~~~~sqGq~r~~lkKl~p~q~k---~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~ 231 (362)
T KOG1013|consen 168 VCDND-KKTHNESQGQSRVSLKKLKPLQRK---SFNICLEKSLPSERADRDEDEERGAILISLAYSST 231 (362)
T ss_pred eccCc-ccccccCcccchhhhhccChhhcc---hhhhhhhccCCcccccccchhhccceeeeeccCcC
Confidence 99987 466889999999999888654332 22233333222 22458999999888664
No 124
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.94 E-value=7.5e-06 Score=62.60 Aligned_cols=91 Identities=16% Similarity=0.225 Sum_probs=68.9
Q ss_pred EEEEEEeecCCCCCCCCCCCCCcEEE--EEEcCCceEEEEeecCCCCCCccccEEEEeeeC-CCCCceEEEEEEeccCCC
Q 021710 22 EITIICAKHLKNVNWRNGGDLKPYVV--FYVDPAYRLATQSDDSGSTRPVWNERFTLPITH-SVRESVLTLEIFHSKLSE 98 (308)
Q Consensus 22 ~VtIisAk~L~~~~~~~~~~~dPYv~--v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~-~~~~~~L~l~V~d~~~~~ 98 (308)
-|||+.+++|...+..+. ...-|++ +.+.+...+||.+.+. ..||+++|+|.|.+.. .+.+..|.|.|+..-
T Consensus 2 witv~~c~d~s~~~~~~e-~~~i~ikg~~tl~kpv~~KsS~rrg-s~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~--- 76 (103)
T cd08684 2 WITVLKCKDLSWPSSCGE-NPTIYIKGILTLPKPVHFKSSAKEG-SNDIEFMETFVFAIKLQNLQTVRLVFKIQTQT--- 76 (103)
T ss_pred EEEEEEecccccccccCc-CCeeEEEEEEecCCCccccchhhcC-CCChhHHHHHHHHHHHhhccceEEEEEeeccC---
Confidence 589999999987765553 3555665 4444445677777665 9999999999999764 356778999999843
Q ss_pred CCCceeeeEEEeCcccccC
Q 021710 99 TPKPLVGSVKFPLAHLVDS 117 (308)
Q Consensus 99 ~~d~lLG~~~ipL~~L~~~ 117 (308)
.+++.||.+.+.|+++-.+
T Consensus 77 ~RKe~iG~~sL~l~s~gee 95 (103)
T cd08684 77 PRKRTIGECSLSLRTLSTQ 95 (103)
T ss_pred CccceeeEEEeecccCCHH
Confidence 4788999999999887553
No 125
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=2.3e-05 Score=73.14 Aligned_cols=88 Identities=22% Similarity=0.327 Sum_probs=72.8
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEE
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIF 92 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~ 92 (308)
...|.|+|+.+.+|...+..+. +||||.+++.+ ..+++|.+.|+ +.+|+||++|.|.+... +....+.|.||
T Consensus 232 ~~~l~vt~iRc~~l~ssDsng~--sDpyvS~~l~pdv~~~fkkKt~~~K~-t~~p~fd~~~~~~i~pgdLa~~kv~lsvg 308 (362)
T KOG1013|consen 232 TPGLIVTIIRCSHLASSDSNGY--SDPYVSQRLSPDVGKKFKKKTQQKKK-TLNPEFDEEFFYDIGPGDLAYKKVALSVG 308 (362)
T ss_pred CCceEEEEEEeeeeeccccCCC--CCccceeecCCCcchhhcccCcchhc-cCCccccccccccCCccchhcceEEEeec
Confidence 4678999999999998887765 99999999875 35889999998 99999999999999874 56678999999
Q ss_pred eccCCCCCCceeeeEEE
Q 021710 93 HSKLSETPKPLVGSVKF 109 (308)
Q Consensus 93 d~~~~~~~d~lLG~~~i 109 (308)
|.+. ....+++|-+..
T Consensus 309 d~~~-G~s~d~~GG~~~ 324 (362)
T KOG1013|consen 309 DYDI-GKSNDSIGGSML 324 (362)
T ss_pred ccCC-CcCccCCCcccc
Confidence 9984 336677776544
No 126
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=2.1e-05 Score=74.45 Aligned_cols=109 Identities=19% Similarity=0.222 Sum_probs=85.0
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCC----ceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEe
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPA----YRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFH 93 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~----~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d 93 (308)
.+.|+|.|+.|++|..+.-... .++|||+|++... .+.+|+...+ ++.|.+.+.+.|.-.. ....|.++||.
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~-~~apyVkVYlL~~g~c~ak~ktk~A~k-T~~plyqq~l~f~~sp--~~k~Lq~tv~g 343 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKS-LPAPYVKVYLLENGFCIAKKKTKSARK-TLDPLYQQQLSFDQSP--PGKYLQGTVWG 343 (405)
T ss_pred cCceeEEEEecccccccCCccc-ccCceeEEEEcCCCceecccccccccc-cCchhhhhhhhhccCC--CccEEEEEEec
Confidence 4899999999999976654443 5899999998652 4678888888 7777666677777655 57889999998
Q ss_pred ccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCC
Q 021710 94 SKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRP 134 (308)
Q Consensus 94 ~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~ 134 (308)
.-.+...+.|+|.+.|-|.+|..... ....||+|...
T Consensus 344 dygRmd~k~fmg~aqi~l~eL~ls~~----~~igwyKlfgs 380 (405)
T KOG2060|consen 344 DYGRMDHKSFMGVAQIMLDELNLSSS----PVIGWYKLFGS 380 (405)
T ss_pred cccccchHHHhhHHHHHhhhhccccc----cceeeeeccCC
Confidence 65566788999999999999876542 34689999754
No 127
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.81 E-value=0.0001 Score=76.15 Aligned_cols=118 Identities=19% Similarity=0.332 Sum_probs=87.4
Q ss_pred CCCCcccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC------CceEEEEeecCCCCCCccccE-EEEe-eeCCCCC
Q 021710 13 MSSPITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP------AYRLATQSDDSGSTRPVWNER-FTLP-ITHSVRE 84 (308)
Q Consensus 13 ~~~~~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~------~~k~kT~v~k~gt~nP~WnE~-f~f~-l~~~~~~ 84 (308)
+......+|.|+||++.-|..+. ...||.|.+-+ ...++|+++..|+.||+|+|. |.|. |.-+ +-
T Consensus 697 VdgvIA~t~sV~VISgqFLSdrk------vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLp-eL 769 (1189)
T KOG1265|consen 697 VDGVIAATLSVTVISGQFLSDRK------VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLP-EL 769 (1189)
T ss_pred ccceEEeeEEEEEEeeeeccccc------cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceeccc-ch
Confidence 44445689999999999887653 66899999843 257899999999999999985 7886 2211 35
Q ss_pred ceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCcc--EEEEEEEEcc
Q 021710 85 SVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQG--KIRVKLVLNG 150 (308)
Q Consensus 85 ~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G--~L~v~v~~~~ 150 (308)
..|.|.|++++ ..|||.=.+||+.|..+ .+.+.|++..+.+.+ .|.|.|.+..
T Consensus 770 A~lRiavyeEg-----gK~ig~RIlpvd~l~~G--------Yrhv~LRse~Nqpl~lp~Lfv~i~~kd 824 (1189)
T KOG1265|consen 770 ASLRIAVYEEG-----GKFIGQRILPVDGLNAG--------YRHVCLRSESNQPLTLPALFVYIVLKD 824 (1189)
T ss_pred hheeeeeeccC-----CceeeeeccchhcccCc--------ceeEEecCCCCCccccceeEEEEEeec
Confidence 67999999987 35999999999998764 255777777777644 4555555543
No 128
>PLN02964 phosphatidylserine decarboxylase
Probab=97.53 E-value=0.00016 Score=74.15 Aligned_cols=87 Identities=18% Similarity=0.343 Sum_probs=68.3
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcE-EEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccC
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPY-VVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKL 96 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPY-v~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~ 96 (308)
.+.+.|+|++|+ + + ..|+| +.+.++ .+.+||.+.++ |.||+||+...|.|... +.....|.|||++
T Consensus 53 ~~~~~~~~~~~~-~---~-----~~~~~~~~~~~g-~~~f~t~~~~~-~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~- 119 (644)
T PLN02964 53 SGIALLTLVGAE-M---K-----FKDKWLACVSFG-EQTFRTETSDS-TDKPVWNSEKKLLLEKN-GPHLARISVFETN- 119 (644)
T ss_pred cCeEEEEeehhh-h---c-----cCCcEEEEEEec-ceeeeeccccc-cCCcccchhhceEeccC-CcceEEEEEEecC-
Confidence 588999999997 2 1 13555 556665 48999999999 99999999988888764 3344699999998
Q ss_pred CCCCCceeeeEEEeCcccccC
Q 021710 97 SETPKPLVGSVKFPLAHLVDS 117 (308)
Q Consensus 97 ~~~~d~lLG~~~ipL~~L~~~ 117 (308)
+...+++++.+++.|.++...
T Consensus 120 ~~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 120 RLSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CCCHHHhhhheeecHhhccHH
Confidence 577899999999988766543
No 129
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.53 E-value=0.0001 Score=77.09 Aligned_cols=91 Identities=18% Similarity=0.246 Sum_probs=73.8
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCc-eEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccC
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAY-RLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKL 96 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~-k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~ 96 (308)
...++|.|++|.+|...|..+ ..|||+++.++.+. .-++.-+.+ ++||++.+-|.+.+.-. ....|+++|||+|
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng--~adpYv~l~lGk~~~~d~~~yip~-tlnPVfgkmfel~~~lp-~ek~l~v~vyd~D- 686 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNG--DADPYVKLLLGKKRTLDRAHYIPN-TLNPVFGKMFELECLLP-FEKDLIVEVYDHD- 686 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCC--CcCceeeeeeccchhhhhhhcCcC-CCCcHHHHHHHhhcccc-hhhcceeEEEEee-
Confidence 467889999999999998776 49999999998632 345666676 99999999887776543 3567999999999
Q ss_pred CCCCCceeeeEEEeCcc
Q 021710 97 SETPKPLVGSVKFPLAH 113 (308)
Q Consensus 97 ~~~~d~lLG~~~ipL~~ 113 (308)
...+|+.||+..+.|+.
T Consensus 687 ~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 687 LEAQDEKIGETTIDLEN 703 (1105)
T ss_pred cccccchhhceehhhhh
Confidence 46789999999998876
No 130
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=97.52 E-value=0.0045 Score=51.21 Aligned_cols=124 Identities=18% Similarity=0.300 Sum_probs=82.7
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCc--eEEEEeecCCCCCCccccEEEEeeeC-------CCCCceE
Q 021710 17 ITHDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAY--RLATQSDDSGSTRPVWNERFTLPITH-------SVRESVL 87 (308)
Q Consensus 17 ~~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~--k~kT~v~k~gt~nP~WnE~f~f~l~~-------~~~~~~L 87 (308)
....+.|+|++..+++.. ....+|+....... ..+|......+..-.|||.|.|.+.- .++...|
T Consensus 5 ~kf~~~l~i~~l~~~p~~------~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~ 78 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPSS------NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKEL 78 (143)
T ss_pred eeEEEEEEEEEeECcCCC------CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEE
Confidence 356789999999988762 13445555444432 35555555446788999999887652 1355678
Q ss_pred EEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEccC
Q 021710 88 TLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGR 151 (308)
Q Consensus 88 ~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~~ 151 (308)
.|.|+.... ......||++.|.|.++...... .....+.|... ....-.|.|+|.+...
T Consensus 79 ~~~v~~~~~-~~~k~~lG~~~inLaey~~~~~~---~~~~~~~l~~~-~~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 79 KFSVFEVDG-SGKKKVLGKVSINLAEYANEDEE---PITVRLLLKKC-KKSNATLSISISLSEL 137 (143)
T ss_pred EEEEEEecC-CCccceEEEEEEEHHHhhCcCCC---cEEEEEeCccC-CCCCcEEEEEEEEEEC
Confidence 899988741 22336999999999999875321 33466666543 3457789998888765
No 131
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=97.34 E-value=0.0015 Score=50.29 Aligned_cols=84 Identities=18% Similarity=0.277 Sum_probs=64.5
Q ss_pred CCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCCC
Q 021710 42 LKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSE 121 (308)
Q Consensus 42 ~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~ 121 (308)
.+..+++.+|+..+..|.-... .+-.||++|+|.+.. ..+|+|.|+=+|. ..++|...+.|++...+
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~~--s~q~WDQ~Fti~LdR---sRELEI~VywrD~----RslCav~~lrLEd~~~~---- 75 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKPK--SNQAWDQSFTLELER---SRELEIAVYWRDW----RSLCAVKFLKLEDERHE---- 75 (98)
T ss_pred cceEEEEEEcCeEEeecccccc--ccccccceeEEEeec---ccEEEEEEEEecc----hhhhhheeeEhhhhccc----
Confidence 5678899999877777777654 588999999999987 5789999998773 45888888889884331
Q ss_pred CCceeEEEEEeCCCCCCccEEEEEEEE
Q 021710 122 PTQYVRKLEVLRPSGRPQGKIRVKLVL 148 (308)
Q Consensus 122 ~~~~~~~~~L~~~sg~~~G~L~v~v~~ 148 (308)
..+.| .++|.|...|+|
T Consensus 76 -----~~~~l-----epqg~l~~ev~f 92 (98)
T cd08687 76 -----VQLDM-----EPQLCLVAELTF 92 (98)
T ss_pred -----ceecc-----ccccEEEEEEEe
Confidence 22333 678888888887
No 132
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.31 E-value=0.0038 Score=59.56 Aligned_cols=123 Identities=13% Similarity=0.186 Sum_probs=93.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCC------CCCceEEEEEEec
Q 021710 21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHS------VRESVLTLEIFHS 94 (308)
Q Consensus 21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~------~~~~~L~l~V~d~ 94 (308)
+.|.|++++++.... ...-.+...+++ ....|-.+.. +..|.||..+.|.++.. .....|+|++|..
T Consensus 2 ivl~i~egr~F~~~~-----~~~~vv~a~~ng-~~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~ 74 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP-----RHPIVVEAKFNG-ESLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAV 74 (340)
T ss_pred EEEEEecccCCCCCC-----CccEEEEEEeCC-ceeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEEEEEe
Confidence 678999999998662 255678888886 7888887777 88999999999998742 3556799999988
Q ss_pred cCCCCCCceeeeEEEeCccc---ccCCCCCCCceeEEEEEeCCCCC---CccEEEEEEEEccCCC
Q 021710 95 KLSETPKPLVGSVKFPLAHL---VDSDSSEPTQYVRKLEVLRPSGR---PQGKIRVKLVLNGRPL 153 (308)
Q Consensus 95 ~~~~~~d~lLG~~~ipL~~L---~~~~~~~~~~~~~~~~L~~~sg~---~~G~L~v~v~~~~~~~ 153 (308)
+......+.||.+.++|..+ ...... ....||+|+.-+.+ .+=+|.|.+.+.....
T Consensus 75 ~~~~~~re~iGyv~LdLRsa~~~~~~~~~---~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 75 DGSTGKRESIGYVVLDLRSAVVPQEKNQK---QKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred cCCCCcceeccEEEEEccccccccccccc---cCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 74456788999999999998 332111 45799999876333 3668999999988743
No 133
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=97.26 E-value=0.00079 Score=62.69 Aligned_cols=119 Identities=18% Similarity=0.157 Sum_probs=82.2
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS 97 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~ 97 (308)
.++|.|.+..+++|+-.....+-+.+-||++.++...+.+|++... ...-.|.|.|.+++.+ ...|.+-|+.|..
T Consensus 50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~-~~~f~w~e~F~~Dvv~---~~vl~~lvySW~p- 124 (442)
T KOG1452|consen 50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSS-GPGFAWAEDFKHDVVN---IEVLHYLVYSWPP- 124 (442)
T ss_pred cceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccC-CCCccchhhceeeccc---ceeeeEEEeecCc-
Confidence 5889999999999975443221157899999999877788887765 7788999999999876 4678888999884
Q ss_pred CCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEcc
Q 021710 98 ETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNG 150 (308)
Q Consensus 98 ~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~ 150 (308)
..+++++=.-.|.+..+...... +...+.| +++|.+-|++.+.+
T Consensus 125 q~RHKLC~~g~l~~~~v~rqspd----~~~Al~l-----ePrgq~~~r~~~~D 168 (442)
T KOG1452|consen 125 QRRHKLCHLGLLEAFVVDRQSPD----RVVALYL-----EPRGQPPLRLPLAD 168 (442)
T ss_pred hhhccccccchhhhhhhhhcCCc----ceeeeec-----ccCCCCceecccCC
Confidence 45666654444555555443222 1222333 56777777777755
No 134
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=96.91 E-value=0.0047 Score=49.32 Aligned_cols=98 Identities=14% Similarity=0.184 Sum_probs=57.5
Q ss_pred EEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCC------CCCceEEEEEEeccCCCCCCceeeeEEEeCcccccCC
Q 021710 45 YVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHS------VRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSD 118 (308)
Q Consensus 45 Yv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~------~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~ 118 (308)
||++.+-.-+.+.|.++. +.+|.+|-+-.|.|... +....|.|+++..- ....+.||.++|++.++++..
T Consensus 2 Fct~dFydfEtq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~--g~d~~tla~~~i~l~~ll~~~ 77 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL--GSDFETLAAGQISLRPLLESN 77 (107)
T ss_dssp EEEE-STT---EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE---SS-EEEEEEEEE--SHHHH--
T ss_pred EEEEEeeceeeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec--cCCeEEEEEEEeechhhhcCC
Confidence 566666555778899887 48999999888887643 35668999998865 234789999999999999654
Q ss_pred CCCCCceeEEEEEeCCCCCCccEEEEEEEEc
Q 021710 119 SSEPTQYVRKLEVLRPSGRPQGKIRVKLVLN 149 (308)
Q Consensus 119 ~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~ 149 (308)
+. .......|...++..-|.|.+.+++.
T Consensus 78 ~~---~i~~~~~l~g~~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 78 GE---RIHGSATLVGVSGEDFGTLEYWIRLR 105 (107)
T ss_dssp S-----EEEEEEE-BSSS-TSEEEEEEEEEE
T ss_pred Cc---eEEEEEEEeccCCCeEEEEEEEEEec
Confidence 42 34567788888888999999999886
No 135
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.88 E-value=0.02 Score=48.70 Aligned_cols=127 Identities=13% Similarity=0.188 Sum_probs=86.0
Q ss_pred ccEEEEEEEEeecCCCCCC-C-CCCCCCcEEEEEEc-CCceEEEEeecCCCCCCccccEEEEeeeCCC------------
Q 021710 18 THDLEITIICAKHLKNVNW-R-NGGDLKPYVVFYVD-PAYRLATQSDDSGSTRPVWNERFTLPITHSV------------ 82 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~-~-~~~~~dPYv~v~l~-~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~------------ 82 (308)
...|.|.|..+|-...--. . + ..+.-.++.+. ..++++|+.+.. +.+|.++|.|.|.+....
T Consensus 8 ~~yL~l~vlgGkAFld~l~~~~~--~~~s~~~l~l~f~~QRF~S~~Vp~-~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 8 RRYLHLRVLGGKAFLDHLQEPEG--QVCSTFTLHLHFRGQRFRSKPVPC-ACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred ceEEEEEEeCchhHhhhhhccCC--CCceEEEEEEEecCceEecCCccc-ccCCCCCCcEEEEecccccccccchhHhhc
Confidence 4779999999875432111 0 1 24444444442 248999999998 999999999999998641
Q ss_pred CCceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCC---CccEEEEEEEEccC
Q 021710 83 RESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGR---PQGKIRVKLVLNGR 151 (308)
Q Consensus 83 ~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~---~~G~L~v~v~~~~~ 151 (308)
....|++.|...+. .....++|+-.+.=..++..... ......+|...... +.|.|.|++.+.+.
T Consensus 85 ~~~pihivli~~d~-~~~~~Lv~s~~ldWR~vL~s~~~---~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 85 ISDPIHIVLIRTDP-SGETTLVGSHFLDWRKVLCSGNG---STSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred CCCceEEEEEEecC-CCceEeeeeceehHHHHhccCCC---ccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 12346777776663 34558999988888887765543 11355666654333 68999999999865
No 136
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.76 E-value=0.00042 Score=72.63 Aligned_cols=121 Identities=12% Similarity=0.140 Sum_probs=90.0
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeC---C----C-CCceEEEE
Q 021710 19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITH---S----V-RESVLTLE 90 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~---~----~-~~~~L~l~ 90 (308)
..+++.|.+|+.|...+..+. +|||+.+.+-. +.++|-++.. ++||+||++.+|.-.+ . + .-..+.|+
T Consensus 206 ~~lR~yiyQar~L~a~dk~~~--sdp~a~v~f~~-qs~~T~~v~~-tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e 281 (1105)
T KOG1326|consen 206 SPLRSYIYQARALGAPDKDDE--SDPDAAVEFCG-QSKETEVVPG-TLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFE 281 (1105)
T ss_pred hhhHHHHHHHHhhcCCCcccC--CCchhhhhccc-ccceeEeecC-cCCCCccceeeccceeecCccchhhcCCCeEEEE
Confidence 456777888999988887664 99999999875 7888999988 9999999999987322 1 1 12467899
Q ss_pred EEeccCCCCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEccC
Q 021710 91 IFHSKLSETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGR 151 (308)
Q Consensus 91 V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~~ 151 (308)
|+|.+ +.+.++|+|+..+...-.... ....|+++.+ .+...|.+.++..+...
T Consensus 282 ~yd~d-r~g~~ef~gr~~~~p~V~~~~------p~lkw~p~~r-g~~l~gd~l~a~eliq~ 334 (1105)
T KOG1326|consen 282 VYDLD-RSGINEFKGRKKQRPYVMVQC------PALKWVPTMR-GAFLDGDVLIAAELIQI 334 (1105)
T ss_pred eehhh-hhchHHhhcccccceEEEecC------CccceEEeec-ccccccchhHHHHHHhh
Confidence 99988 578999999876654444331 3468999975 45668887777766554
No 137
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.73 E-value=0.029 Score=47.91 Aligned_cols=88 Identities=24% Similarity=0.218 Sum_probs=58.3
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC-Cc----eEEEEeecCCCCCCccccEEEEeeeC--CCCCceEEEEE
Q 021710 19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP-AY----RLATQSDDSGSTRPVWNERFTLPITH--SVRESVLTLEI 91 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~-~~----k~kT~v~k~gt~nP~WnE~f~f~l~~--~~~~~~L~l~V 91 (308)
..++|+|+++.++.-.+ ..+-||.+.+-. .+ ...|+-+. ..++.|||.++|+|.- -..+..|.|.|
T Consensus 8 ~~~~v~i~~~~~~~~~~-----~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLPr~ArL~iti 80 (158)
T cd08398 8 SNLRIKILCATYVNVND-----IDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLPRSARLCLSI 80 (158)
T ss_pred CCeEEEEEeeccCCCCC-----cCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCChhheEEEEE
Confidence 46889999999886432 367888876522 12 12333333 3579999999998753 23577899999
Q ss_pred EeccCCC---CCCceeeeEEEeCcc
Q 021710 92 FHSKLSE---TPKPLVGSVKFPLAH 113 (308)
Q Consensus 92 ~d~~~~~---~~d~lLG~~~ipL~~ 113 (308)
|+..... .....||.+.++|-+
T Consensus 81 ~~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 81 CSVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EEEecccCCCCceEEEEEEEEEEEC
Confidence 9965211 123469999888766
No 138
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.53 E-value=0.0059 Score=60.93 Aligned_cols=87 Identities=20% Similarity=0.382 Sum_probs=67.0
Q ss_pred EEEeecCCCCCCCCCCCCCcEEEEEEc--C---CceEEEEeecCCCCCCccccEEEEeeeC---CCCCceEEEEEEeccC
Q 021710 25 IICAKHLKNVNWRNGGDLKPYVVFYVD--P---AYRLATQSDDSGSTRPVWNERFTLPITH---SVRESVLTLEIFHSKL 96 (308)
Q Consensus 25 IisAk~L~~~~~~~~~~~dPYv~v~l~--~---~~k~kT~v~k~gt~nP~WnE~f~f~l~~---~~~~~~L~l~V~d~~~ 96 (308)
.++|++|.+++.+++ +|||..+.-. . ...++|.++++ +++|.|.+ |.+.+.. ...+..+.|+|||.+
T Consensus 142 ~~~~~~ld~kd~f~k--sd~~l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~- 216 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSK--SDPYLEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYD- 216 (529)
T ss_pred eeeeeecCccccccc--CCcceEEEEecCCCceeeccccceecc-CCCCcccc-cccchhhhcccCCCCceEEEEeccC-
Confidence 466899999999886 9999887643 1 24789999998 99999965 4444332 124578899999998
Q ss_pred CCCCCceeeeEEEeCccccc
Q 021710 97 SETPKPLVGSVKFPLAHLVD 116 (308)
Q Consensus 97 ~~~~d~lLG~~~ipL~~L~~ 116 (308)
...++++||++..++.++..
T Consensus 217 ~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 217 SNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred CCCCcCceeEecccHHHhcc
Confidence 46678999999999888864
No 139
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=96.40 E-value=0.02 Score=49.56 Aligned_cols=72 Identities=21% Similarity=0.274 Sum_probs=49.3
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEE--cCC---ceEEEEeecCCCCCCccccEEEEeeeC--CCCCceEEEEE
Q 021710 19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYV--DPA---YRLATQSDDSGSTRPVWNERFTLPITH--SVRESVLTLEI 91 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l--~~~---~k~kT~v~k~gt~nP~WnE~f~f~l~~--~~~~~~L~l~V 91 (308)
..++|+|+++.+|.-.+ . ..+-||.+.| +.. ....|+.... ..++.|||.++|++.- -.....|.|.|
T Consensus 8 ~~f~i~i~~~~~~~~~~---~-~~~l~V~~~lyhG~~~L~~p~~T~~~~~-~~~~~Wnewl~F~I~i~dLPr~ArLciti 82 (173)
T cd08693 8 EKFSITLHKISNLNAAE---R-TMKVGVQAGLFHGGESLCKTVKTSEVSG-KNDPVWNETLEFDINVCDLPRMARLCFAI 82 (173)
T ss_pred CCEEEEEEEeccCccCC---C-CceEEEEEEEEECCEEccCceEccccCC-CCccccceeEEcccchhcCChhHeEEEEE
Confidence 46899999999987522 1 3667887655 221 2334554443 4679999999998653 23577899999
Q ss_pred Eecc
Q 021710 92 FHSK 95 (308)
Q Consensus 92 ~d~~ 95 (308)
|+..
T Consensus 83 ~~~~ 86 (173)
T cd08693 83 YEVS 86 (173)
T ss_pred EEec
Confidence 9865
No 140
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.21 E-value=0.027 Score=47.58 Aligned_cols=91 Identities=27% Similarity=0.311 Sum_probs=59.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEE--cC---CceEEEEeecCCCCCCccccEEEEeeeC--CCCCceEEEEE
Q 021710 19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYV--DP---AYRLATQSDDSGSTRPVWNERFTLPITH--SVRESVLTLEI 91 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l--~~---~~k~kT~v~k~gt~nP~WnE~f~f~l~~--~~~~~~L~l~V 91 (308)
..++|+|....++...+. . ..+-||++.+ +. .....|+.... ..++.|||.++|++.- -..+..|.|.|
T Consensus 8 ~~~~i~i~~~~~~~~~~~-~--~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP~~arL~itl 83 (156)
T cd08380 8 FNLRIKIHGITNINLLDS-E--DLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLPREARLCLSI 83 (156)
T ss_pred CCeEEEEEeeccccccCC-C--ceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCChhheEEEEE
Confidence 457788888877764111 1 3667777765 22 12334444433 4689999999998652 22577899999
Q ss_pred EeccCCC-CCCceeeeEEEeCcc
Q 021710 92 FHSKLSE-TPKPLVGSVKFPLAH 113 (308)
Q Consensus 92 ~d~~~~~-~~d~lLG~~~ipL~~ 113 (308)
|+.+... ..+..||.+.++|=+
T Consensus 84 ~~~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 84 YAVSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred EEEecCCCCcceEEEEEeEEeEc
Confidence 9976221 145789999888766
No 141
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.13 E-value=0.044 Score=48.24 Aligned_cols=58 Identities=17% Similarity=0.191 Sum_probs=41.7
Q ss_pred ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEEeccCCCCCC---ceeeeEEEeCc
Q 021710 54 YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIFHSKLSETPK---PLVGSVKFPLA 112 (308)
Q Consensus 54 ~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~d~~~~~~~d---~lLG~~~ipL~ 112 (308)
...+|-|... +.+|.|+|++.+.|+.. .....|.|+++|......+| ..+|.+.+||-
T Consensus 53 se~~S~V~Yh-~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQ-VDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEee-cCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 4677888776 78999999999998864 35678999999865222222 45777777663
No 142
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=96.05 E-value=0.097 Score=45.95 Aligned_cols=57 Identities=30% Similarity=0.396 Sum_probs=41.3
Q ss_pred ceEEEEeecCCCCCCccccEEEEeeeCC-CCCceEEEEEEeccCCCCC-CceeeeEEEeC
Q 021710 54 YRLATQSDDSGSTRPVWNERFTLPITHS-VRESVLTLEIFHSKLSETP-KPLVGSVKFPL 111 (308)
Q Consensus 54 ~k~kT~v~k~gt~nP~WnE~f~f~l~~~-~~~~~L~l~V~d~~~~~~~-d~lLG~~~ipL 111 (308)
...+|-|... +.+|.|+|++.+.|+.. .....|.|+++|....... ...+|.+.+||
T Consensus 53 se~~S~V~yH-~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 53 SEYRSFVLYH-NNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred ceEEEEEEEc-CCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 3568888887 78999999999998864 3567899999996532212 24567666665
No 143
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=95.76 E-value=0.13 Score=44.79 Aligned_cols=73 Identities=16% Similarity=0.292 Sum_probs=45.8
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEE--cCC--ceEEEEeecCCCCCCccccEEEEeeeCC--CCCceEEEEEE
Q 021710 19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYV--DPA--YRLATQSDDSGSTRPVWNERFTLPITHS--VRESVLTLEIF 92 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l--~~~--~k~kT~v~k~gt~nP~WnE~f~f~l~~~--~~~~~L~l~V~ 92 (308)
..++|+|+++..+ +.+... ...-||++.| +.. ...+|+.... +.++.|||.++|+|.-. ..+..|.|.||
T Consensus 10 ~~friki~~~~~~-~~~~~~--~~~l~V~~~Ly~g~~~l~~~~T~~~~~-~~~~~WnEwL~f~I~~~dLP~~arLc~ti~ 85 (178)
T cd08399 10 RKFRVKILGIDIP-VLPRNT--DLTVFVEANIQHGQQVLCQRRTSPKPF-TEEVLWNTWLEFDIKIKDLPKGALLNLQIY 85 (178)
T ss_pred CCEEEEEEeeccc-CcCCCC--ceEEEEEEEEEECCeecccceeeccCC-CCCccccccEECccccccCChhhEEEEEEE
Confidence 4578888888633 332111 2456666654 221 1224555555 56899999999987532 35778999999
Q ss_pred ecc
Q 021710 93 HSK 95 (308)
Q Consensus 93 d~~ 95 (308)
+..
T Consensus 86 ~~~ 88 (178)
T cd08399 86 CGK 88 (178)
T ss_pred EEe
Confidence 964
No 144
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=95.44 E-value=0.051 Score=46.39 Aligned_cols=71 Identities=25% Similarity=0.305 Sum_probs=48.4
Q ss_pred CCCcEEEEEEcC-C----ceEEEEeecCCCCCCccccEEEEeeeCC--CCCceEEEEEEeccCCCCCCceeeeEEEeCcc
Q 021710 41 DLKPYVVFYVDP-A----YRLATQSDDSGSTRPVWNERFTLPITHS--VRESVLTLEIFHSKLSETPKPLVGSVKFPLAH 113 (308)
Q Consensus 41 ~~dPYv~v~l~~-~----~k~kT~v~k~gt~nP~WnE~f~f~l~~~--~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~ 113 (308)
..+-||++.+-. . ....|+...- +....|||.++|+|.-. ..+..|.|.||+.+. ......||.+.++|=+
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f-~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~-~~~~~~vg~~~~~lFd 106 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPF-KNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSG-TGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCC-CCCcccceeEEcccchhcCChhheEEEEEEEecC-CCCceEEEEEEEeeEC
Confidence 377888876632 1 1234544444 56789999999987632 357789999999762 3356688988887655
No 145
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=95.26 E-value=0.12 Score=53.64 Aligned_cols=15 Identities=33% Similarity=0.550 Sum_probs=7.7
Q ss_pred CCCCccccEEEEeee
Q 021710 65 STRPVWNERFTLPIT 79 (308)
Q Consensus 65 t~nP~WnE~f~f~l~ 79 (308)
..+|.|+-.|.|.|.
T Consensus 441 ~~DPdf~yr~~l~id 455 (1102)
T KOG1924|consen 441 GMDPDFKYRFRLDID 455 (1102)
T ss_pred CCCCCcchhhcccCc
Confidence 455555555554443
No 146
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=95.02 E-value=0.1 Score=44.96 Aligned_cols=93 Identities=22% Similarity=0.236 Sum_probs=56.8
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEc--CC---ceEEEEeec--C-CCCCCccccEEEEeeeCC--CCCceEE
Q 021710 19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVD--PA---YRLATQSDD--S-GSTRPVWNERFTLPITHS--VRESVLT 88 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~--~~---~k~kT~v~k--~-gt~nP~WnE~f~f~l~~~--~~~~~L~ 88 (308)
..+.|+|.++.++....... ..+-||.+.+- .. ....|+... + -...+.|||.++|++.-. ..+..|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~--~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQS--FEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred ccEEEEEEEeecCChHHhhc--cccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 56889999999987654322 37788887662 21 122443321 1 023577999999987521 2577899
Q ss_pred EEEEeccCCCC--------CCceeeeEEEeCcc
Q 021710 89 LEIFHSKLSET--------PKPLVGSVKFPLAH 113 (308)
Q Consensus 89 l~V~d~~~~~~--------~d~lLG~~~ipL~~ 113 (308)
|.||+...... .+..||.+.++|=+
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEc
Confidence 99998652110 23466666665544
No 147
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=94.92 E-value=0.081 Score=46.00 Aligned_cols=59 Identities=14% Similarity=0.264 Sum_probs=36.4
Q ss_pred ceEEEEeecCCCCCCccccEEEEeeeCCC-CCceEEEEEEeccCCCCCC--ceeeeEEEeCcc
Q 021710 54 YRLATQSDDSGSTRPVWNERFTLPITHSV-RESVLTLEIFHSKLSETPK--PLVGSVKFPLAH 113 (308)
Q Consensus 54 ~k~kT~v~k~gt~nP~WnE~f~f~l~~~~-~~~~L~l~V~d~~~~~~~d--~lLG~~~ipL~~ 113 (308)
....|.|... +.+|.|+|+|.+.|+..+ ....|.|+++|.......+ ..+|.+.+||-+
T Consensus 59 ~~~~S~v~yh-~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYH-NKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT--SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEec-CCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 4567777777 789999999999998753 5678999999976332222 689999999987
No 148
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=94.75 E-value=0.13 Score=53.52 Aligned_cols=10 Identities=30% Similarity=0.647 Sum_probs=4.6
Q ss_pred EEEeCccccc
Q 021710 107 VKFPLAHLVD 116 (308)
Q Consensus 107 ~~ipL~~L~~ 116 (308)
..|++..|++
T Consensus 452 l~id~~~liD 461 (1102)
T KOG1924|consen 452 LDIDLTELID 461 (1102)
T ss_pred ccCcHHHHHH
Confidence 3445544443
No 149
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=93.82 E-value=0.27 Score=40.87 Aligned_cols=59 Identities=25% Similarity=0.377 Sum_probs=39.4
Q ss_pred eEEEEeecCCCCCCccccEEEEeeeC--CCCCceEEEEEEeccCCCCCC----ceeeeEEEeCccc
Q 021710 55 RLATQSDDSGSTRPVWNERFTLPITH--SVRESVLTLEIFHSKLSETPK----PLVGSVKFPLAHL 114 (308)
Q Consensus 55 k~kT~v~k~gt~nP~WnE~f~f~l~~--~~~~~~L~l~V~d~~~~~~~d----~lLG~~~ipL~~L 114 (308)
...|+.......++.|||.+.|++.- -..+..|.|.||..+. .... ..||.+.++|=+.
T Consensus 21 ~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~-~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 21 VQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDS-KKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp EEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEEC-STTT--EEEEEEEEEEESB-T
T ss_pred eeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecC-CCccccceeEEEEEEEEeECC
Confidence 34566665512799999999998652 2367899999999763 2233 6899999987664
No 150
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=93.14 E-value=0.48 Score=40.68 Aligned_cols=72 Identities=21% Similarity=0.270 Sum_probs=56.6
Q ss_pred CCCcEEEEEEcCCceEEEEeecC-CCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCCCCceeeeEEEeCccccc
Q 021710 41 DLKPYVVFYVDPAYRLATQSDDS-GSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVD 116 (308)
Q Consensus 41 ~~dPYv~v~l~~~~k~kT~v~k~-gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~ 116 (308)
...-|+++.++.+.+.+|+...- ....-.+||.|.+.+.+ --..|.|+||.... ..+.+|+++.|||-....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~--~Pesi~l~i~E~~~--~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR--WPESIKLEIYEKSG--LSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec--CCCEEEEEEEEccC--ccceEEEEEEeeCCCCcc
Confidence 36789999999878888877654 35556788999999877 35679999999873 588999999999866543
No 151
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=92.37 E-value=0.35 Score=48.54 Aligned_cols=63 Identities=16% Similarity=0.298 Sum_probs=49.2
Q ss_pred ceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCC---CCCCceeeeEEEeCcccccCC
Q 021710 54 YRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLS---ETPKPLVGSVKFPLAHLVDSD 118 (308)
Q Consensus 54 ~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~---~~~d~lLG~~~ipL~~L~~~~ 118 (308)
...+|.++.+ .+||.|.++|.+...-+ ..+.|.|++++.+.. ....+|+|++...|.++....
T Consensus 41 e~~rte~i~~-~~~p~f~~~~~l~y~fE-~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~ 106 (529)
T KOG1327|consen 41 EVGRTEVIRN-VLNPFFTKKFLLQYRFE-KVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSS 106 (529)
T ss_pred cccceeeeec-cCCccceeeechhheee-eeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhh
Confidence 4568999998 89999999988776543 456789999986632 346789999999999987643
No 152
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=91.95 E-value=0.65 Score=40.15 Aligned_cols=57 Identities=16% Similarity=0.271 Sum_probs=40.2
Q ss_pred EEEEeecCCCCCCccccEEEEeeeCCC-CCceEEEEEEeccCCC----CCCceeeeEEEeCcc
Q 021710 56 LATQSDDSGSTRPVWNERFTLPITHSV-RESVLTLEIFHSKLSE----TPKPLVGSVKFPLAH 113 (308)
Q Consensus 56 ~kT~v~k~gt~nP~WnE~f~f~l~~~~-~~~~L~l~V~d~~~~~----~~d~lLG~~~ipL~~ 113 (308)
.-|.++.. ..+|.|+|+|.+.|+..+ ....|.|+++|..... .....+|-+.+||-+
T Consensus 54 ~~~sv~~~-~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYY-HKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEc-CCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 33444444 389999999999997654 5678999999966221 235678888887765
No 153
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=91.82 E-value=0.95 Score=35.33 Aligned_cols=72 Identities=26% Similarity=0.258 Sum_probs=45.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEc--CC---ceEEEEeecCCCCCCccccEEEEeeeC--CCCCceEEEEEEe
Q 021710 21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVD--PA---YRLATQSDDSGSTRPVWNERFTLPITH--SVRESVLTLEIFH 93 (308)
Q Consensus 21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~--~~---~k~kT~v~k~gt~nP~WnE~f~f~l~~--~~~~~~L~l~V~d 93 (308)
+.+++...+++....... ..+-||++.+- .. ....|+...- ...+.|||.++|++.- -..+..|.|.||+
T Consensus 13 ~~~~~~~~~~~~l~~~~~--~~~l~v~~~l~~g~~~l~~pv~t~~~~~-~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~ 89 (100)
T smart00142 13 LVITIALIHGIPLNWSRD--YSDLYVEIQLYHGGKLLCLPVSTSYKPF-FPSVKWNEWLTFPIQISDLPREARLCITIYE 89 (100)
T ss_pred eEEEEEEeeCCCcccccC--cceEEEEEEEEECCEEccCcEEecccCC-CCCcccceeEEccCchhcCChhhEEEEEEEE
Confidence 566777777765443222 13788887662 21 1224444433 5569999999998653 2357889999998
Q ss_pred cc
Q 021710 94 SK 95 (308)
Q Consensus 94 ~~ 95 (308)
..
T Consensus 90 ~~ 91 (100)
T smart00142 90 VK 91 (100)
T ss_pred ee
Confidence 54
No 154
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=91.73 E-value=0.56 Score=49.60 Aligned_cols=89 Identities=15% Similarity=0.209 Sum_probs=67.8
Q ss_pred CCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCCC
Q 021710 42 LKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSE 121 (308)
Q Consensus 42 ~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~ 121 (308)
++.|+++.+......+|....+.-.+|.|.+.|.+.+.. ....++++|.+.+. .+...++|.++++...+..+..+
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h--~~g~v~~~~~~~~~-~G~s~~w~~v~~s~~~~~~~~~~- 213 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAH--KAGYVIFRVKGARV-PGWSKRWGRVKISFLQYCSGHRI- 213 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccc--cccEEEEeecCCcc-ccceeEEEEeccchhhhhccccc-
Confidence 478999998876777788877623789999998777665 35678888877762 34477999999999999886433
Q ss_pred CCceeEEEEEeCCCCCC
Q 021710 122 PTQYVRKLEVLRPSGRP 138 (308)
Q Consensus 122 ~~~~~~~~~L~~~sg~~ 138 (308)
..|+.+.+.++++
T Consensus 214 ----~~~~~Il~~d~~~ 226 (887)
T KOG1329|consen 214 ----GGWFPILDNDGKP 226 (887)
T ss_pred ----cceeeeeccCCcc
Confidence 4789998776664
No 155
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=90.98 E-value=0.94 Score=39.47 Aligned_cols=58 Identities=12% Similarity=0.227 Sum_probs=40.5
Q ss_pred ceEEEEeecCCCCCCccccEEEEeeeCCC-CCceEEEEEEeccCCCC-----CCceeeeEEEeCc
Q 021710 54 YRLATQSDDSGSTRPVWNERFTLPITHSV-RESVLTLEIFHSKLSET-----PKPLVGSVKFPLA 112 (308)
Q Consensus 54 ~k~kT~v~k~gt~nP~WnE~f~f~l~~~~-~~~~L~l~V~d~~~~~~-----~d~lLG~~~ipL~ 112 (308)
....|.|... +.+|.|+|+|.+.|+..+ ....|.|+++|.+-... ....+|-+.+||-
T Consensus 54 ~~~~S~V~yH-nk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 54 TEAYTAVTYH-NKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eeEEEEEEEe-CCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 4677888877 789999999999988653 45679999999552111 1245666666654
No 156
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=90.77 E-value=1.1 Score=39.26 Aligned_cols=59 Identities=12% Similarity=0.203 Sum_probs=41.2
Q ss_pred ceEEEEeecCCCCCCccccEEEEeeeCCC-CCceEEEEEEeccCCC--------CCCceeeeEEEeCcc
Q 021710 54 YRLATQSDDSGSTRPVWNERFTLPITHSV-RESVLTLEIFHSKLSE--------TPKPLVGSVKFPLAH 113 (308)
Q Consensus 54 ~k~kT~v~k~gt~nP~WnE~f~f~l~~~~-~~~~L~l~V~d~~~~~--------~~d~lLG~~~ipL~~ 113 (308)
....|.|... +.+|.|+|++.+.|+..+ ....|.|+++|.+-.. .....+|-+.+||-.
T Consensus 56 ~~~~s~V~yh-~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHH-NQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEc-CCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 4677888887 799999999999987643 4567999999965111 112456666666644
No 157
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=88.93 E-value=3.8 Score=39.19 Aligned_cols=117 Identities=18% Similarity=0.230 Sum_probs=75.5
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCC-ccccEEEEeeeCCCCCceEEEEEEeccCC
Q 021710 19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRP-VWNERFTLPITHSVRESVLTLEIFHSKLS 97 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP-~WnE~f~f~l~~~~~~~~L~l~V~d~~~~ 97 (308)
..|.|.|.+-.++.. ....|+.+..+. ...+|..+..+-.+- .-.|...+.+.. .+.+|+|.||-..
T Consensus 58 F~LLVeI~EI~~i~k-------~khiyIef~~Gr-~d~TT~~IpTsKK~RI~IqqRV~IkIRQ--cDnTLkI~lfKKk-- 125 (508)
T PTZ00447 58 FYLLVKINEIFNINK-------YKHIYIIFSTDK-YDFTTDEIPTNKKNRIHIDQRVDIKIRQ--CDETLRVDLFTTK-- 125 (508)
T ss_pred eeEEEEehhhhcccc-------ceeEEEEEEcCc-eEEEccccccCcCceEEEeeeeeeeeee--cCceEEEEEEecc--
Confidence 456677666544421 256788888886 566665554422221 223444445554 5789999999987
Q ss_pred CCCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEccC
Q 021710 98 ETPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNGR 151 (308)
Q Consensus 98 ~~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~~ 151 (308)
..+..-||.+.|.++.-+-.... ....||-+ ..+|...++|.+++.=..+
T Consensus 126 Lvkk~hIgdI~InIn~dIIdk~F---PKnkWy~c-~kDGq~~cRIqLSFhKL~k 175 (508)
T PTZ00447 126 LTKKVHIGQIKIDINASVISKSF---PKNEWFVC-FKDGQEICKVQMSFYKIQK 175 (508)
T ss_pred ccceeEEEEEEecccHHHHhccC---CccceEEE-ecCCceeeeEEEEehhhhh
Confidence 55778899999998763322222 45689999 4678888888887765554
No 158
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=85.99 E-value=3.1 Score=33.20 Aligned_cols=68 Identities=18% Similarity=0.277 Sum_probs=45.6
Q ss_pred CCceEEEEEEeccCC--CCCCceeeeEEEeCcccccC----C-----CCCCCceeEEEEEeCCCCCCccEEEEEEEEcc
Q 021710 83 RESVLTLEIFHSKLS--ETPKPLVGSVKFPLAHLVDS----D-----SSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNG 150 (308)
Q Consensus 83 ~~~~L~l~V~d~~~~--~~~d~lLG~~~ipL~~L~~~----~-----~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~ 150 (308)
....|++.+++.... .....+||++.|++.++... . ..........|+|++..+...|+|.+.+++..
T Consensus 27 ~~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~~G~I~l~iRLsc 105 (112)
T PF14924_consen 27 SSFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNPVGEISLYIRLSC 105 (112)
T ss_pred hCCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCceeeeEEEEEEEec
Confidence 355677766654311 23567899999999876521 0 00011335689999998899999999998865
No 159
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.87 E-value=0.22 Score=51.26 Aligned_cols=96 Identities=9% Similarity=0.081 Sum_probs=59.5
Q ss_pred CCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCC
Q 021710 41 DLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSS 120 (308)
Q Consensus 41 ~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~ 120 (308)
..++|+.|.++-.....+.+.+. +..|.|+|+|.+.+.. ...+.|.|++... ...+.+...+++-.+++... ..
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~-~~~~~~~~~F~~~v~~---~~~~~i~v~~~~~-~~~~~~~a~~~~~~e~~k~~-~~ 100 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVE-LRIPELRETFHVEVVA---GGAKNIIVLLKSP-DPKALSEAQLSLQEESQKLL-AL 100 (694)
T ss_pred hhhhhheeccceeecccccCCCC-CCCchhhhheeeeeec---CCceEEEEEecCC-cchhhHHHhHHHHHHHHHHH-hh
Confidence 48899988887544444444555 8999999999999775 5678899998762 33333344444434444331 11
Q ss_pred CCCceeEEEEEeCCCCCCccEEEEEEEEcc
Q 021710 121 EPTQYVRKLEVLRPSGRPQGKIRVKLVLNG 150 (308)
Q Consensus 121 ~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~ 150 (308)
....|..+ ++.|++.+.+.+..
T Consensus 101 ---~~~~w~~~-----~~~g~~~~~~~~~~ 122 (694)
T KOG0694|consen 101 ---EQRLWVLI-----EELGTLLKPAALTG 122 (694)
T ss_pred ---hhhhcccc-----ccccceeeeecccC
Confidence 23456654 34566666666655
No 160
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=84.73 E-value=5.3 Score=41.08 Aligned_cols=116 Identities=17% Similarity=0.291 Sum_probs=75.5
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEeccCCC
Q 021710 19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFHSKLSE 98 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d~~~~~ 98 (308)
-.++|.|++..+|+.+... --.||++.+++ .+..|.-.. ...|.|.-.=.|.-..+ -..+++.+|.+....
T Consensus 341 ~smevvvmevqglksvapn----rivyctmeveg-eklqtdqae--askp~wgtqgdfstthp--lpvvkvklftestgv 411 (1218)
T KOG3543|consen 341 LSMEVVVMEVQGLKSVAPN----RIVYCTMEVEG-EKLQTDQAE--ASKPKWGTQGDFSTTHP--LPVVKVKLFTESTGV 411 (1218)
T ss_pred eeeeEEEeeeccccccCCC----eeEEEEEEecc-cccccchhh--hcCCCCCcCCCcccCCC--CceeEEEEEeeccee
Confidence 4578889999999977532 34799999987 666666655 46899998767766653 345777777765222
Q ss_pred --CCCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEEEcc
Q 021710 99 --TPKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLVLNG 150 (308)
Q Consensus 99 --~~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~~~~ 150 (308)
..|.-||++.+.-.. +.. ....|+.+.-+.....-.|.|++.++-
T Consensus 412 laledkelgrvil~ptp----ns~---ks~ewh~mtvpknsqdqdlkiklavrm 458 (1218)
T KOG3543|consen 412 LALEDKELGRVILQPTP----NSA---KSPEWHTMTVPKNSQDQDLKIKLAVRM 458 (1218)
T ss_pred EEeechhhCeEEEecCC----CCc---CCccceeeecCCCCcCccceEEEEEec
Confidence 356678877653211 111 235788887666555556666666654
No 161
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=84.13 E-value=4.1 Score=34.33 Aligned_cols=94 Identities=15% Similarity=0.108 Sum_probs=50.5
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC------CceEEEEeecC-CCCCCccccEEEEeee--CCCCCceEEE
Q 021710 19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP------AYRLATQSDDS-GSTRPVWNERFTLPIT--HSVRESVLTL 89 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~------~~k~kT~v~k~-gt~nP~WnE~f~f~l~--~~~~~~~L~l 89 (308)
..|.|.|.+.. |+.... -.|||++|++-. ...+.|.+... .+..-.||....+... +-.....+.|
T Consensus 13 t~l~v~Iekig-lkda~~----~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~f 87 (147)
T PF14186_consen 13 TYLSVFIEKIG-LKDASQ----YIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFF 87 (147)
T ss_dssp -EEEEEEEEEE--TTGGG-----EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEE
T ss_pred ceEEEEEEEEE-ECChHH----ccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEE
Confidence 56777776655 776543 378999999842 24566666522 1233344444443322 2225678999
Q ss_pred EEEeccCCCCCCceeeeEEEeCcccccC
Q 021710 90 EIFHSKLSETPKPLVGSVKFPLAHLVDS 117 (308)
Q Consensus 90 ~V~d~~~~~~~d~lLG~~~ipL~~L~~~ 117 (308)
|+.|++....+....+.+-+.+++|..+
T Consensus 88 E~kH~K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 88 EFKHYKPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp EEEEEETTTTCEEEEEEEEEEGGG--SE
T ss_pred EEEeeeccceeeeeeEEEEEEhhhccCC
Confidence 9999885444445678888899888764
No 162
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=80.59 E-value=3.4 Score=37.88 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=9.5
Q ss_pred HHHHHHhhhhhhHHHHh
Q 021710 265 QKLQKQFGGLSLEEEVN 281 (308)
Q Consensus 265 ga~~g~lgg~~~~~~~~ 281 (308)
..+|||.||++|.++|.
T Consensus 143 ~TAAGVAGG~lL~n~i~ 159 (247)
T PF09849_consen 143 QTAAGVAGGMLLANGIE 159 (247)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555554
No 163
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=75.58 E-value=1.4 Score=46.72 Aligned_cols=67 Identities=22% Similarity=0.263 Sum_probs=50.6
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC----CceEEEEeecCCCCCCccccEEEEeeeCCCCCceEEEEEEe
Q 021710 18 THDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDP----AYRLATQSDDSGSTRPVWNERFTLPITHSVRESVLTLEIFH 93 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~----~~k~kT~v~k~gt~nP~WnE~f~f~l~~~~~~~~L~l~V~d 93 (308)
.+.+++.+++|..|+. ..+.||+..++. ..+.+|+++.+ +..|.||++|++++... ..+.|+..+
T Consensus 758 ygflh~~vhsat~lkq-------s~~lY~Td~v~e~~~~~s~~st~~iad-T~~~~~npe~hv~~~~s---qS~r~~~~e 826 (1112)
T KOG4269|consen 758 YGFLHVIVHSATGLKQ-------SRNLYCTDEVDEFGYFVSKASTRVIAD-TAEPQWNPEKHVPVIES---QSSRLEKTE 826 (1112)
T ss_pred ccceeeeecccccccc-------ccceeeehhhhhhccccccccceeeec-ccCCCCChhcccchhhc---cccchhhhc
Confidence 5788999999998874 256788877653 35889999999 99999999999998753 334454444
Q ss_pred cc
Q 021710 94 SK 95 (308)
Q Consensus 94 ~~ 95 (308)
++
T Consensus 827 k~ 828 (1112)
T KOG4269|consen 827 KS 828 (1112)
T ss_pred cc
Confidence 43
No 164
>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.49 E-value=3.2 Score=38.57 Aligned_cols=23 Identities=9% Similarity=-0.091 Sum_probs=14.9
Q ss_pred CcCcchhhHHHHHHhhhhhhHHHH
Q 021710 257 PVDYSPYDQKLQKQFGGLSLEEEV 280 (308)
Q Consensus 257 g~g~gl~~ga~~g~lgg~~~~~~~ 280 (308)
||+.||+.|++.| |+|+.+..++
T Consensus 31 ~~~g~l~ggl~~g-l~~~~~~~~f 53 (281)
T COG4395 31 GMLGGLAGGLLMG-LSGMFFGGLF 53 (281)
T ss_pred hhhhHHHHHHHHh-HHHHHHHHHH
Confidence 6777777777777 6665555443
No 165
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=72.52 E-value=28 Score=29.06 Aligned_cols=90 Identities=9% Similarity=0.098 Sum_probs=61.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEeee-----------CCCCCceEE
Q 021710 20 DLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPIT-----------HSVRESVLT 88 (308)
Q Consensus 20 ~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~-----------~~~~~~~L~ 88 (308)
.|+|.-+.+-+.- +.. .-|.|..|.+.+ +..+|+...- ..-=.++|+|.|.-. +.+++..+.
T Consensus 3 eL~i~aVTCPGv~---L~~--~~~vyL~v~~lg-~~~~T~~~pp-vFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~ 75 (140)
T PF14909_consen 3 ELEIHAVTCPGVW---LCD--KGDVYLSVCILG-QYKRTRCLPP-VFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVY 75 (140)
T ss_pred EEEEEEEecCCeE---eCC--CCCEEEEEEEcc-cEeecccCCC-cCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEE
Confidence 3455445554432 222 378999999987 7888888775 555567899998732 114677899
Q ss_pred EEEEeccCCCCCCceeeeEEEeCcccccCC
Q 021710 89 LEIFHSKLSETPKPLVGSVKFPLAHLVDSD 118 (308)
Q Consensus 89 l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~ 118 (308)
||++.+... ..+.|+...-.++|++-..
T Consensus 76 iELiQl~~~--~g~iLA~ye~n~rDfLfP~ 103 (140)
T PF14909_consen 76 IELIQLVPP--AGEILAYYEENTRDFLFPE 103 (140)
T ss_pred EEEEEEeCC--CCcEEEEEeccccceEcCC
Confidence 999987732 3778888888888887543
No 166
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=71.00 E-value=2.4 Score=31.19 Aligned_cols=18 Identities=11% Similarity=0.019 Sum_probs=12.4
Q ss_pred cchhhHHHHHHhhhhhhH
Q 021710 260 YSPYDQKLQKQFGGLSLE 277 (308)
Q Consensus 260 ~gl~~ga~~g~lgg~~~~ 277 (308)
.|+++||++|++.|++++
T Consensus 3 ~g~l~Ga~~Ga~~glL~a 20 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFA 20 (74)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 466777777777777753
No 167
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=62.05 E-value=1.3e+02 Score=28.83 Aligned_cols=124 Identities=18% Similarity=0.202 Sum_probs=71.8
Q ss_pred ccEEEEEEEEeecCCCCC---CCCC-CCCCcEEEEEEcCCceEEEEeecCCCCCCccc--cEEEEeeeCCC--------C
Q 021710 18 THDLEITIICAKHLKNVN---WRNG-GDLKPYVVFYVDPAYRLATQSDDSGSTRPVWN--ERFTLPITHSV--------R 83 (308)
Q Consensus 18 ~~~L~VtIisAk~L~~~~---~~~~-~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~Wn--E~f~f~l~~~~--------~ 83 (308)
..+|.|+|..|+||...- +... .....|....+.+ ....|....+ ..+|.+. +...|.+..+. .
T Consensus 191 ~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllG-n~Vt~~~F~~-l~~~~f~~er~s~vRirSS~~~L~~yf~~ 268 (340)
T PF12416_consen 191 LFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLG-NDVTTEPFKS-LSSPSFPPERASGVRIRSSLRVLRRYFQQ 268 (340)
T ss_pred eEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecC-cEeEeeeccc-cCCCCcCeeeeeEEeecccHHHHHHHHhh
Confidence 468899999999986541 1111 0145566677765 3455555555 5677664 22225555431 2
Q ss_pred CceEEEEEEeccCCCCCCceeeeEEEeCcccccCCCCC--C--CceeEEEEEeCCCCC------CccEEEEEEEEc
Q 021710 84 ESVLTLEIFHSKLSETPKPLVGSVKFPLAHLVDSDSSE--P--TQYVRKLEVLRPSGR------PQGKIRVKLVLN 149 (308)
Q Consensus 84 ~~~L~l~V~d~~~~~~~d~lLG~~~ipL~~L~~~~~~~--~--~~~~~~~~L~~~sg~------~~G~L~v~v~~~ 149 (308)
...|.|.++..+ ..||.+.|++..++...... . ......|.|..+... .+-.|.|+|+++
T Consensus 269 ~~~L~I~Lc~g~------~~Lg~~~v~l~~Ll~~~~~~~~~~~~~~eg~F~l~~~~~~~~~~~~~~P~v~v~vtLr 338 (340)
T PF12416_consen 269 IPKLQIHLCCGN------QSLGSTSVPLQPLLPKDSLEFNNSPVIIEGAFPLNPPNRIKPKPNELKPTVGVSVTLR 338 (340)
T ss_pred CCCeEEEEeeCC------cEEEEEEEEhhhccCCCcccccCCceeecceEeecCCCccCCcccccCCeEEEEEEEE
Confidence 346777777743 47999999999997543321 0 122456777654221 234566666654
No 168
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=55.64 E-value=1.4e+02 Score=29.51 Aligned_cols=108 Identities=9% Similarity=0.097 Sum_probs=58.0
Q ss_pred CCcEEEEEEcCCceEEEEeecCCCCCCcc---c-cEEEEeeeCC-----C-------CCceEEEEEEeccCC----C-CC
Q 021710 42 LKPYVVFYVDPAYRLATQSDDSGSTRPVW---N-ERFTLPITHS-----V-------RESVLTLEIFHSKLS----E-TP 100 (308)
Q Consensus 42 ~dPYv~v~l~~~~k~kT~v~k~gt~nP~W---n-E~f~f~l~~~-----~-------~~~~L~l~V~d~~~~----~-~~ 100 (308)
..+||+|+|.+...+.+.+-.-...++.- + ---.|.|.+. + ....|+|.||.-... . ..
T Consensus 36 spCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~ 115 (460)
T PF06219_consen 36 SPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNS 115 (460)
T ss_pred CCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccccc
Confidence 56799999987444433332221122221 1 1123444321 0 125699999983310 1 35
Q ss_pred CceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCC----CCccEEEEEEEEcc
Q 021710 101 KPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSG----RPQGKIRVKLVLNG 150 (308)
Q Consensus 101 d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg----~~~G~L~v~v~~~~ 150 (308)
.++||+++|+|+--... .........|..|-+... ...-+|++.|+..+
T Consensus 116 ~klLG~v~vpldl~~ae-~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~Ep 168 (460)
T PF06219_consen 116 GKLLGKVRVPLDLKWAE-GKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEP 168 (460)
T ss_pred ceEEEEEEEEecccccc-CCeeEEEccceecCCCCCCCCCCCcceEEEEEeccC
Confidence 68999999999843221 111113457888854321 12567888887765
No 169
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=55.46 E-value=33 Score=25.31 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=27.3
Q ss_pred ccccCCCCCCCceeEEEEEeCCCC---CCccEEEEEEEEccCCC
Q 021710 113 HLVDSDSSEPTQYVRKLEVLRPSG---RPQGKIRVKLVLNGRPL 153 (308)
Q Consensus 113 ~L~~~~~~~~~~~~~~~~L~~~sg---~~~G~L~v~v~~~~~~~ 153 (308)
.+-...+.. ...+|..|.++.. ..+|.|.|.|.+..+-.
T Consensus 5 tVY~qP~H~--~~~KW~~L~dP~D~~~G~kGYlKv~i~Vlg~GD 46 (72)
T PF08151_consen 5 TVYNQPDHQ--FYRKWALLTDPDDTSAGVKGYLKVDISVLGPGD 46 (72)
T ss_pred eeecCCCCe--eEeceEEecCCCCCccCCceEEEEEEEEEcCCC
Confidence 333444433 4568999988754 35899999999998744
No 170
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=54.70 E-value=1.1e+02 Score=24.59 Aligned_cols=93 Identities=14% Similarity=0.219 Sum_probs=50.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEEcCCceEEEEeecCCCCCCcc-ccEEEEeeeCC-CCCceEEEEEEeccC
Q 021710 19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYVDPAYRLATQSDDSGSTRPVW-NERFTLPITHS-VRESVLTLEIFHSKL 96 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~~~k~kT~v~k~gt~nP~W-nE~f~f~l~~~-~~~~~L~l~V~d~~~ 96 (308)
..|.++=+.-..++..+..++ ++||++|.-.......|..... ..-.- .+.+.|.+... .-..-+.|+++|.+.
T Consensus 4 ~~l~L~~I~l~~iP~f~~~~g--c~p~i~I~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~ 79 (134)
T PF10409_consen 4 RPLFLKSIILHGIPNFNSGGG--CRPYIEIYNGGKKVFSTSKSYE--DPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRS 79 (134)
T ss_dssp -EEEEEEEEEES-TTSTTSSC--CTEEEEEEETTEEEEETCCTCC--CCCEEETTCEEEEEEEEEEEESEEEEEEEECET
T ss_pred eeEEEEEEEEECCCccCCCCC--EEEEEEEECCCccEEEecccee--ccccccceeEEEEeCCCCeEeCCEEEEEEeCCC
Confidence 445555555566665544444 8999999987633333332221 11111 12344444321 013357899999773
Q ss_pred CCCCCceeeeEEEeCcccc
Q 021710 97 SETPKPLVGSVKFPLAHLV 115 (308)
Q Consensus 97 ~~~~d~lLG~~~ipL~~L~ 115 (308)
....++.+.++++.-.-+.
T Consensus 80 ~~~~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 80 SSMSKEKMFRFWFNTGFIE 98 (134)
T ss_dssp TECCCEEEEEEEEEGGGSB
T ss_pred cccccCeEEEEEEeeeeee
Confidence 2346677888888766655
No 171
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=54.33 E-value=15 Score=36.01 Aligned_cols=48 Identities=21% Similarity=0.355 Sum_probs=34.2
Q ss_pred eeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCC--ccEEEEEEEEccCCCCC
Q 021710 103 LVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRP--QGKIRVKLVLNGRPLPP 155 (308)
Q Consensus 103 lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~--~G~L~v~v~~~~~~~~p 155 (308)
+||.+.|+++.+++... ....||++.+...+. .|.| |++++.+....|
T Consensus 1 ~~G~v~i~~~~~~~~~~----~~e~w~~i~~~~~~~~~~~~l-lk~~~~~~~VLp 50 (395)
T cd05137 1 LVGRIDITLEMILDRGL----DKETWLPIFDVDNKSVGEGLI-IKVSSEENFVLP 50 (395)
T ss_pred CeeEEEeehhhhccCCC----CceeeeccccCCCCCcCcceE-EEEEeeeceecc
Confidence 48999999999766432 235899998765443 4566 788888865543
No 172
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=53.43 E-value=12 Score=41.24 Aligned_cols=13 Identities=46% Similarity=0.953 Sum_probs=7.8
Q ss_pred CCCCCCCCCCCCC
Q 021710 193 TPQPPAPPRPLFS 205 (308)
Q Consensus 193 ~~~~~~pp~~~~~ 205 (308)
+.+|||||.|+|+
T Consensus 21 ps~pppPppPg~~ 33 (2365)
T COG5178 21 PSQPPPPPPPGVN 33 (2365)
T ss_pred CCCCCCccCCCcc
Confidence 3456666667774
No 173
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=51.56 E-value=1.5e+02 Score=25.13 Aligned_cols=81 Identities=17% Similarity=0.103 Sum_probs=52.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEcC---------Cc-eEEEEeecCC----CCCCccccEEEEeeeCC--CCC
Q 021710 21 LEITIICAKHLKNVNWRNGGDLKPYVVFYVDP---------AY-RLATQSDDSG----STRPVWNERFTLPITHS--VRE 84 (308)
Q Consensus 21 L~VtIisAk~L~~~~~~~~~~~dPYv~v~l~~---------~~-k~kT~v~k~g----t~nP~WnE~f~f~l~~~--~~~ 84 (308)
+.-.|.+|.+... .+-||+..+.- .. ...|.+.+.. +..-.||.-|.+.+... ..-
T Consensus 4 v~G~I~~a~~f~~--------~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gw 75 (168)
T PF07162_consen 4 VIGEIESAEGFEE--------DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGW 75 (168)
T ss_pred EEEEEEEEECCCC--------CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCC
Confidence 4456888886542 45677766631 23 4566666531 34578998877776532 223
Q ss_pred ceEEEEEEeccCCCCCCceeeeEEEe
Q 021710 85 SVLTLEIFHSKLSETPKPLVGSVKFP 110 (308)
Q Consensus 85 ~~L~l~V~d~~~~~~~d~lLG~~~ip 110 (308)
-.|.|+||..| ..+++.+.|-..+.
T Consensus 76 P~L~l~V~~~D-~~gr~~~~GYG~~~ 100 (168)
T PF07162_consen 76 PQLVLQVYSLD-SWGRDRVEGYGFCH 100 (168)
T ss_pred ceEEEEEEEEc-ccCCeEEeEEeEEE
Confidence 58999999988 46788888855443
No 174
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=50.52 E-value=2.9e+02 Score=28.07 Aligned_cols=21 Identities=5% Similarity=0.003 Sum_probs=13.0
Q ss_pred hhhHHHHHHhhhhhhHHHHhh
Q 021710 262 PYDQKLQKQFGGLSLEEEVNR 282 (308)
Q Consensus 262 l~~ga~~g~lgg~~~~~~~~~ 282 (308)
-.+||++-+|--++.+-++.-
T Consensus 532 ~lagal~~~m~ara~a~~i~~ 552 (569)
T KOG3671|consen 532 GLAGALANLMDARASALAIHS 552 (569)
T ss_pred ccccHHHHHHHHHHHhhcccc
Confidence 334777777766655555544
No 175
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=49.81 E-value=10 Score=29.94 Aligned_cols=17 Identities=18% Similarity=-0.076 Sum_probs=10.0
Q ss_pred chhhHHHHHHhhhhhhH
Q 021710 261 SPYDQKLQKQFGGLSLE 277 (308)
Q Consensus 261 gl~~ga~~g~lgg~~~~ 277 (308)
++++||+.|+|.|+.|+
T Consensus 86 ~VGvaAaVGlllGlLls 102 (104)
T COG4575 86 GVGVAAAVGLLLGLLLS 102 (104)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34455666666666654
No 176
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=48.96 E-value=1.2e+02 Score=32.24 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=11.8
Q ss_pred CceeeeEEEeCcccccC
Q 021710 101 KPLVGSVKFPLAHLVDS 117 (308)
Q Consensus 101 d~lLG~~~ipL~~L~~~ 117 (308)
|.-+|...||.+.|..+
T Consensus 506 D~~lGVt~IP~~kLt~d 522 (894)
T KOG0132|consen 506 DVELGVTYIPWEKLTDD 522 (894)
T ss_pred hcccCeeEeehHhcCHH
Confidence 44578888888777543
No 177
>COG4803 Predicted membrane protein [Function unknown]
Probab=47.46 E-value=6.3 Score=33.27 Aligned_cols=22 Identities=5% Similarity=-0.028 Sum_probs=16.9
Q ss_pred cchhhHHHHHHhhhhhhHHHHh
Q 021710 260 YSPYDQKLQKQFGGLSLEEEVN 281 (308)
Q Consensus 260 ~gl~~ga~~g~lgg~~~~~~~~ 281 (308)
.|+|+||++|+|+|-.-.-||+
T Consensus 81 ~G~avGAa~GAl~g~l~DvGId 102 (170)
T COG4803 81 LGMAVGAASGALSGSLTDVGID 102 (170)
T ss_pred HHHHHHHhhhhhccceeecCcC
Confidence 5788899999999876555553
No 178
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=45.93 E-value=68 Score=34.64 Aligned_cols=73 Identities=22% Similarity=0.309 Sum_probs=40.6
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCCCcEEEEEE--cCCceEE--EEeecCCCCCCccccEEEEeee--CCCCCceEEEEEE
Q 021710 19 HDLEITIICAKHLKNVNWRNGGDLKPYVVFYV--DPAYRLA--TQSDDSGSTRPVWNERFTLPIT--HSVRESVLTLEIF 92 (308)
Q Consensus 19 ~~L~VtIisAk~L~~~~~~~~~~~dPYv~v~l--~~~~k~k--T~v~k~gt~nP~WnE~f~f~l~--~~~~~~~L~l~V~ 92 (308)
.-++|+++++.++...... ++..+|.+.+ +...-++ .....+++.+|.||+.+.|+|. +-.....|.|.|+
T Consensus 343 ~~frI~l~~is~~n~~~t~---~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~ 419 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNLPETV---DLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIY 419 (1076)
T ss_pred CceEEEEeeccccCCCccc---ceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeee
Confidence 4577888887665432211 2344444444 2211111 1122234789999999888765 2224567888887
Q ss_pred ec
Q 021710 93 HS 94 (308)
Q Consensus 93 d~ 94 (308)
.-
T Consensus 420 ~v 421 (1076)
T KOG0904|consen 420 AV 421 (1076)
T ss_pred Ee
Confidence 74
No 179
>PRK00523 hypothetical protein; Provisional
Probab=44.42 E-value=16 Score=26.87 Aligned_cols=22 Identities=14% Similarity=0.003 Sum_probs=12.9
Q ss_pred HHHHHhhhhhhHHHHhhhhhccccc
Q 021710 266 KLQKQFGGLSLEEEVNRKGKEKRAE 290 (308)
Q Consensus 266 a~~g~lgg~~~~~~~~~~~e~~~~~ 290 (308)
+++|+++|.-+ +.+|. |..+.|
T Consensus 15 li~G~~~Gffi--ark~~-~k~l~~ 36 (72)
T PRK00523 15 LIVGGIIGYFV--SKKMF-KKQIRE 36 (72)
T ss_pred HHHHHHHHHHH--HHHHH-HHHHHH
Confidence 56666666666 34555 555555
No 180
>smart00157 PRP Major prion protein. The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.
Probab=44.34 E-value=5.5 Score=34.79 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=18.7
Q ss_pred CcCcchhhHHHHHHhhhhhhHHHHh
Q 021710 257 PVDYSPYDQKLQKQFGGLSLEEEVN 281 (308)
Q Consensus 257 g~g~gl~~ga~~g~lgg~~~~~~~~ 281 (308)
-|-.-.++|||||+++|.+|..++.
T Consensus 88 ~~~~aAgagAv~g~~~GY~lG~~m~ 112 (217)
T smart00157 88 HVAGAAAAGAVVGGLGGYMLGSAMS 112 (217)
T ss_pred HHHHhhhcchhhhhccccccccccC
Confidence 4444445689999999999988753
No 181
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=43.53 E-value=18 Score=29.15 Aligned_cols=22 Identities=5% Similarity=-0.212 Sum_probs=11.9
Q ss_pred CcchhhHHHHHHhhhhhhHHHH
Q 021710 259 DYSPYDQKLQKQFGGLSLEEEV 280 (308)
Q Consensus 259 g~gl~~ga~~g~lgg~~~~~~~ 280 (308)
+.|.++||++|+|.|.+.....
T Consensus 74 ~~ga~~GAa~Ga~~G~~~g~~~ 95 (118)
T PF13436_consen 74 GRGAAIGAAAGAAVGAAAGAAR 95 (118)
T ss_pred ccchHHHHHHHHHHHHHhhhhh
Confidence 3455556666666655554433
No 182
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=43.31 E-value=11 Score=29.80 Aligned_cols=22 Identities=5% Similarity=-0.002 Sum_probs=15.6
Q ss_pred cchhhHHHHHHhhhhhhHHHHh
Q 021710 260 YSPYDQKLQKQFGGLSLEEEVN 281 (308)
Q Consensus 260 ~gl~~ga~~g~lgg~~~~~~~~ 281 (308)
.|+++||.+|+|.|-...-+|+
T Consensus 20 ~G~~~GA~~Gal~G~l~d~gI~ 41 (102)
T PF06897_consen 20 LGAAVGAAAGALAGALSDYGID 41 (102)
T ss_pred HHHHHHHHHHHHHhHHhhCCCC
Confidence 5677788888888876655543
No 183
>COG3133 SlyB Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=42.96 E-value=9.8 Score=31.64 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=18.3
Q ss_pred hhHHHHHHhhhhhhHHHHhhh
Q 021710 263 YDQKLQKQFGGLSLEEEVNRK 283 (308)
Q Consensus 263 ~~ga~~g~lgg~~~~~~~~~~ 283 (308)
++||+||.+.|-+++|+++..
T Consensus 89 ~~GAvAGgvaG~~ie~~~n~~ 109 (154)
T COG3133 89 AAGAVAGGVAGQGIEEAMNKT 109 (154)
T ss_pred HHhHhhhhhhhhhhHhhhccC
Confidence 459999999999999998875
No 184
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=40.97 E-value=19 Score=33.01 Aligned_cols=30 Identities=3% Similarity=-0.250 Sum_probs=25.0
Q ss_pred CCCCcCcchhhHHHHHHhhhhhhHHHHhhh
Q 021710 254 PSAPVDYSPYDQKLQKQFGGLSLEEEVNRK 283 (308)
Q Consensus 254 ~~~g~g~gl~~ga~~g~lgg~~~~~~~~~~ 283 (308)
+.+|=.+.-|+|.++|+|.+-+|+..+.+.
T Consensus 136 gFLg~A~~TAAGVAGG~lL~n~i~~lF~~~ 165 (247)
T PF09849_consen 136 GFLGGAAQTAAGVAGGMLLANGIESLFGGH 165 (247)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455656778999999999999999998774
No 185
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=40.25 E-value=14 Score=33.21 Aligned_cols=13 Identities=0% Similarity=0.192 Sum_probs=9.1
Q ss_pred CCceEEEEEEecc
Q 021710 83 RESVLTLEIFHSK 95 (308)
Q Consensus 83 ~~~~L~l~V~d~~ 95 (308)
...++.|.|.+-.
T Consensus 20 ~~rtVyv~vrNTS 32 (215)
T PF05818_consen 20 SQRTVYVQVRNTS 32 (215)
T ss_pred ccceEEEEEecCC
Confidence 4677888887754
No 186
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=39.26 E-value=9.9 Score=32.44 Aligned_cols=26 Identities=0% Similarity=-0.093 Sum_probs=0.0
Q ss_pred CCCcCcchhhHHHHHHhhhhhhHHHH
Q 021710 255 SAPVDYSPYDQKLQKQFGGLSLEEEV 280 (308)
Q Consensus 255 ~~g~g~gl~~ga~~g~lgg~~~~~~~ 280 (308)
+.||.++-+||.+.|+|.|+.+-.||
T Consensus 123 k~GL~T~tLVGIIVGVLlaIG~igGI 148 (162)
T PF05808_consen 123 KDGLSTVTLVGIIVGVLLAIGFIGGI 148 (162)
T ss_dssp --------------------------
T ss_pred cCCcceeeeeeehhhHHHHHHHHhhe
Confidence 67899999999999999998876665
No 187
>PF15084 DUF4550: Domain of unknown function (DUF4550)
Probab=39.07 E-value=37 Score=26.67 Aligned_cols=50 Identities=14% Similarity=0.341 Sum_probs=31.2
Q ss_pred EEEEEcCCceEEEEeecCCCCCCccccEEEEeeeCC----CCCceEEEEEEecc
Q 021710 46 VVFYVDPAYRLATQSDDSGSTRPVWNERFTLPITHS----VRESVLTLEIFHSK 95 (308)
Q Consensus 46 v~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l~~~----~~~~~L~l~V~d~~ 95 (308)
+++..+...+.-+....++..=..|.|+|.+.+... +....|+|.|||.+
T Consensus 30 AKvF~e~~~K~~~~w~~gd~~Wv~W~~~~~i~vt~e~l~kl~~h~i~~kiwDtk 83 (99)
T PF15084_consen 30 AKVFLENESKTVKPWHEGDQVWVSWTHTFNINVTKELLKKLYFHKITLKIWDTK 83 (99)
T ss_pred eeEEEcCCceEeeeEecCCEEEEEEEEEEEeccCHHHHHHHHcCeEEEEEEcch
Confidence 445555433333333333344588999999998764 24568999999965
No 188
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=39.01 E-value=25 Score=26.32 Aligned_cols=20 Identities=15% Similarity=0.116 Sum_probs=18.2
Q ss_pred hHHHHHHhhhhhhHHHHhhh
Q 021710 264 DQKLQKQFGGLSLEEEVNRK 283 (308)
Q Consensus 264 ~ga~~g~lgg~~~~~~~~~~ 283 (308)
.|++.|++|.++..|++++.
T Consensus 26 lg~~~giigslqA~eaik~l 45 (84)
T PF05237_consen 26 LGPVVGIIGSLQANEAIKLL 45 (84)
T ss_dssp -HHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHH
Confidence 48999999999999999997
No 189
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=35.88 E-value=13 Score=30.00 Aligned_cols=16 Identities=0% Similarity=-0.348 Sum_probs=10.7
Q ss_pred CcCcchhhHHHHHHhh
Q 021710 257 PVDYSPYDQKLQKQFG 272 (308)
Q Consensus 257 g~g~gl~~ga~~g~lg 272 (308)
||.+|-++||+|++|.
T Consensus 10 G~liGgiiGa~aaLL~ 25 (115)
T COG4980 10 GILIGGIIGAAAALLF 25 (115)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6666666677777665
No 190
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=33.84 E-value=20 Score=32.57 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=7.5
Q ss_pred CceEEEEEEecc
Q 021710 84 ESVLTLEIFHSK 95 (308)
Q Consensus 84 ~~~L~l~V~d~~ 95 (308)
++++.|.|.+-.
T Consensus 50 ~ktVyv~vrNTS 61 (243)
T PRK13731 50 ERTVFLQIKNTS 61 (243)
T ss_pred CceEEEEEeeCC
Confidence 556777776643
No 191
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=33.71 E-value=38 Score=22.66 Aligned_cols=18 Identities=6% Similarity=-0.180 Sum_probs=9.5
Q ss_pred cchhhHHHHHHhhhhhhH
Q 021710 260 YSPYDQKLQKQFGGLSLE 277 (308)
Q Consensus 260 ~gl~~ga~~g~lgg~~~~ 277 (308)
.|.++||+.|.+.|-++.
T Consensus 22 ~ga~iGa~vGa~~G~~ig 39 (46)
T PF13488_consen 22 KGAAIGAAVGAAVGAAIG 39 (46)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 445555555555555443
No 192
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.95 E-value=42 Score=35.01 Aligned_cols=43 Identities=30% Similarity=0.536 Sum_probs=32.6
Q ss_pred CccccEEEEeeeCC--CCCceEEEEEEeccCCCCCCceeeeEEEeC
Q 021710 68 PVWNERFTLPITHS--VRESVLTLEIFHSKLSETPKPLVGSVKFPL 111 (308)
Q Consensus 68 P~WnE~f~f~l~~~--~~~~~L~l~V~d~~~~~~~d~lLG~~~ipL 111 (308)
-.|||.++|++.-. ..+..|.|+||+.+ ....-.|+|..++.+
T Consensus 77 ~~wnewLtlpvky~dLt~~a~l~itiW~~n-~~~~~~~vg~~t~~l 121 (843)
T KOG0906|consen 77 INWNEWLTLPVKYSDLTRNAQLAITIWDVN-GPKKAVFVGGTTVSL 121 (843)
T ss_pred cchhhhhccccccccccccceEEEEEEecC-CCceeeeccceEEEe
Confidence 45999999988643 25678999999977 345677898877754
No 193
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=29.68 E-value=1.1e+02 Score=29.13 Aligned_cols=22 Identities=5% Similarity=-0.296 Sum_probs=14.9
Q ss_pred CCCcCcchhhHHHHHHhhhhhh
Q 021710 255 SAPVDYSPYDQKLQKQFGGLSL 276 (308)
Q Consensus 255 ~~g~g~gl~~ga~~g~lgg~~~ 276 (308)
+-|+=||||.|++||-|.|---
T Consensus 251 gPGFWTGla~Gg~aGYl~G~r~ 272 (318)
T PF06682_consen 251 GPGFWTGLAAGGAAGYLFGRRR 272 (318)
T ss_pred CCCchHHHHHHHHHHhhhccCC
Confidence 3466688888877777766433
No 194
>COG3944 Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]
Probab=27.76 E-value=29 Score=31.10 Aligned_cols=35 Identities=6% Similarity=-0.049 Sum_probs=24.3
Q ss_pred cchhhHHHHHHhhhhhhHHHHhhhhhccccc-cCCCC
Q 021710 260 YSPYDQKLQKQFGGLSLEEEVNRKGKEKRAE-SEFTP 295 (308)
Q Consensus 260 ~gl~~ga~~g~lgg~~~~~~~~~~~e~~~~~-~~~~~ 295 (308)
.=+++|.++|++|+.-|+=-.+|+ +..|-+ +|++.
T Consensus 174 ~Ni~iaf~~Gl~~~igiafl~e~l-D~tIKs~edie~ 209 (226)
T COG3944 174 RNIVIAFLAGLAGAIGIAFLLEYL-DKTIKSEEDIEE 209 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCHHHHHH
Confidence 345667788899999888888888 555544 44443
No 195
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=27.11 E-value=17 Score=37.75 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=29.0
Q ss_pred CCCcEEEEEEcCCceEEEEeecCCCCCCccccEEEEee
Q 021710 41 DLKPYVVFYVDPAYRLATQSDDSGSTRPVWNERFTLPI 78 (308)
Q Consensus 41 ~~dPYv~v~l~~~~k~kT~v~k~gt~nP~WnE~f~f~l 78 (308)
+.++++.+.++. +.++|+...+ +.+|+|||. .|..
T Consensus 304 ~~~~~~itsf~~-~~frt~~~~~-~e~piyNe~-~~E~ 338 (975)
T KOG2419|consen 304 KDKWLAITSFGE-QTFRTEISDD-TEKPIYNED-ERED 338 (975)
T ss_pred CCCchheeecch-hhhhhhhhcc-ccccccccc-cccc
Confidence 478899999885 7899999998 899999997 4443
No 196
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=26.82 E-value=1.8e+02 Score=24.12 Aligned_cols=6 Identities=50% Similarity=1.115 Sum_probs=2.6
Q ss_pred CCCCCC
Q 021710 187 YYPSYY 192 (308)
Q Consensus 187 ~~~~~y 192 (308)
|.|+-|
T Consensus 97 Y~PadY 102 (137)
T PF12868_consen 97 YNPADY 102 (137)
T ss_pred CCcccC
Confidence 434444
No 197
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.77 E-value=41 Score=30.00 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=7.6
Q ss_pred HHHHHHhhhhhhHHHH
Q 021710 265 QKLQKQFGGLSLEEEV 280 (308)
Q Consensus 265 ga~~g~lgg~~~~~~~ 280 (308)
+-+|||.||+.|.+++
T Consensus 144 qTAAGVAGGMlL~n~L 159 (233)
T COG3416 144 QTAAGVAGGMLLANGL 159 (233)
T ss_pred HHHhhhhhhHHHHHHH
Confidence 3444555555444444
No 198
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=26.74 E-value=41 Score=27.10 Aligned_cols=22 Identities=5% Similarity=-0.112 Sum_probs=9.1
Q ss_pred CcCcchhhHHHHHHhhhhhhHH
Q 021710 257 PVDYSPYDQKLQKQFGGLSLEE 278 (308)
Q Consensus 257 g~g~gl~~ga~~g~lgg~~~~~ 278 (308)
|...|-++||+.|++.|...+.
T Consensus 76 ga~~GAa~Ga~~G~~~g~~~~~ 97 (118)
T PF13436_consen 76 GAAIGAAAGAAVGAAAGAARGR 97 (118)
T ss_pred chHHHHHHHHHHHHHhhhhhhh
Confidence 3333334444444444444333
No 199
>PRK10404 hypothetical protein; Provisional
Probab=26.29 E-value=41 Score=26.40 Aligned_cols=15 Identities=0% Similarity=-0.164 Sum_probs=7.5
Q ss_pred CcCcchhhHHHHHHh
Q 021710 257 PVDYSPYDQKLQKQF 271 (308)
Q Consensus 257 g~g~gl~~ga~~g~l 271 (308)
++|.+.+||+|.|+|
T Consensus 83 avGiaagvGlllG~L 97 (101)
T PRK10404 83 GIGVGAAVGLVLGLL 97 (101)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444455555555
No 200
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=25.72 E-value=36 Score=30.19 Aligned_cols=32 Identities=6% Similarity=-0.163 Sum_probs=23.1
Q ss_pred chhhHHHHHHhhhhhhHHHHhhhhhccccc-cCC
Q 021710 261 SPYDQKLQKQFGGLSLEEEVNRKGKEKRAE-SEF 293 (308)
Q Consensus 261 gl~~ga~~g~lgg~~~~~~~~~~~e~~~~~-~~~ 293 (308)
-+++|+++|++.|.++.=..++. ++++-+ +|+
T Consensus 177 ~~~~g~~~G~~~~~~~~~~~~~~-d~~i~~~~d~ 209 (226)
T TIGR01006 177 NLLIGFLLGLVVALIIVLLKELL-DTRVKRPEDV 209 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCcCCHHHH
Confidence 35567888888888888777887 777665 444
No 201
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=24.25 E-value=24 Score=25.67 Aligned_cols=20 Identities=5% Similarity=-0.275 Sum_probs=13.0
Q ss_pred CCCcCcchhhHHHHHHhhhh
Q 021710 255 SAPVDYSPYDQKLQKQFGGL 274 (308)
Q Consensus 255 ~~g~g~gl~~ga~~g~lgg~ 274 (308)
|||+-+|-+||.+.|+|-|.
T Consensus 8 kmG~~MG~~VG~~~G~l~G~ 27 (67)
T PF10247_consen 8 KMGFMMGGAVGGAFGALFGT 27 (67)
T ss_pred HHHHHHhhHHHhhhhhhhhh
Confidence 46666777777666666553
No 202
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.25 E-value=1.2e+02 Score=28.78 Aligned_cols=13 Identities=38% Similarity=0.549 Sum_probs=6.2
Q ss_pred CCCCCCCCCCCCC
Q 021710 198 APPRPLFSRASSY 210 (308)
Q Consensus 198 ~pp~~~~~~~~~y 210 (308)
|+|+|.++.+..|
T Consensus 25 plP~p~f~~s~s~ 37 (362)
T KOG3875|consen 25 PLPRPGFQSSVSN 37 (362)
T ss_pred CCCCccccccccC
Confidence 3355555544334
No 203
>PF14472 DUF4429: Domain of unknown function (DUF4429)
Probab=22.85 E-value=1.2e+02 Score=23.23 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=23.2
Q ss_pred CCceeeeEEEeCcccccCCCCCCCceeEEEEEeCCCCCCccEEEEEEE
Q 021710 100 PKPLVGSVKFPLAHLVDSDSSEPTQYVRKLEVLRPSGRPQGKIRVKLV 147 (308)
Q Consensus 100 ~d~lLG~~~ipL~~L~~~~~~~~~~~~~~~~L~~~sg~~~G~L~v~v~ 147 (308)
...-.|..+|+|++|.. ++++.+.+...|.|++.+.
T Consensus 20 ~~~~~G~~~ipl~~i~g------------V~~~~pg~~~~G~Lrf~~~ 55 (94)
T PF14472_consen 20 AKRALGEKTIPLSAISG------------VEWKPPGGLTNGYLRFVLR 55 (94)
T ss_pred hhccCCCEEEEHHHcce------------EEEEcCCceeEEEEEEEEC
Confidence 34458999999999864 4554444444677655543
No 204
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=21.35 E-value=1.1e+02 Score=25.45 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=8.5
Q ss_pred hhhhHHHHhhhhhccccc
Q 021710 273 GLSLEEEVNRKGKEKRAE 290 (308)
Q Consensus 273 g~~~~~~~~~~~e~~~~~ 290 (308)
|+|.....+.. |.|-+|
T Consensus 20 G~AA~~~~krk-~kK~~e 36 (137)
T PF12868_consen 20 GYAAHKYKKRK-EKKKEE 36 (137)
T ss_pred HHHHHHHHHHH-hhhhhh
Confidence 34433444665 555555
No 205
>PRK10132 hypothetical protein; Provisional
Probab=21.26 E-value=54 Score=26.12 Aligned_cols=15 Identities=7% Similarity=-0.086 Sum_probs=6.8
Q ss_pred CcCcchhhHHHHHHh
Q 021710 257 PVDYSPYDQKLQKQF 271 (308)
Q Consensus 257 g~g~gl~~ga~~g~l 271 (308)
.+|.+.+||+|.|+|
T Consensus 89 svgiaagvG~llG~L 103 (108)
T PRK10132 89 SVGTAAAVGIFIGAL 103 (108)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444445444444
No 206
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=20.83 E-value=9.7e+02 Score=27.40 Aligned_cols=6 Identities=33% Similarity=0.606 Sum_probs=2.5
Q ss_pred CCCCCC
Q 021710 157 SQDYQS 162 (308)
Q Consensus 157 ~~~Y~~ 162 (308)
.+.|.+
T Consensus 1477 spsysp 1482 (1605)
T KOG0260|consen 1477 SPSYSP 1482 (1605)
T ss_pred CCCCCC
Confidence 334444
No 207
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=20.58 E-value=64 Score=24.55 Aligned_cols=13 Identities=23% Similarity=-0.097 Sum_probs=6.7
Q ss_pred hHHHHHHhhhhhh
Q 021710 264 DQKLQKQFGGLSL 276 (308)
Q Consensus 264 ~ga~~g~lgg~~~ 276 (308)
+.+.+|+|.|+.|
T Consensus 79 iAagvG~llG~Ll 91 (94)
T PF05957_consen 79 IAAGVGFLLGLLL 91 (94)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555554
No 208
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=20.26 E-value=4.5e+02 Score=20.97 Aligned_cols=38 Identities=18% Similarity=0.095 Sum_probs=23.9
Q ss_pred EEEEeeeCCCCCceEEEEEEeccCCCCCCceeeeEEEe
Q 021710 73 RFTLPITHSVRESVLTLEIFHSKLSETPKPLVGSVKFP 110 (308)
Q Consensus 73 ~f~f~l~~~~~~~~L~l~V~d~~~~~~~d~lLG~~~ip 110 (308)
.|.|.+....-.....|+|||.+......=||-++.|.
T Consensus 42 ~f~~~v~~~~LG~L~~irIwHDnsG~~~~Wfl~~V~V~ 79 (114)
T cd01757 42 SLEMTFDCQNLGKLTTVQIGHDNSGLLAKWLVEYVMVR 79 (114)
T ss_pred ceEEEEecCCcCCcEEEEEEECCCCCCCCeeeeEEEEE
Confidence 35566543224567789999988543444578776654
Done!