BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021712
         (308 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UGD|A Chain A, Structural And Functional Characterization Of An
           Anesthetic Binding Site In The Second Cysteine-Rich
           Domain Of Protein Kinase C Delta
 pdb|3UGD|B Chain B, Structural And Functional Characterization Of An
           Anesthetic Binding Site In The Second Cysteine-Rich
           Domain Of Protein Kinase C Delta
          Length = 65

 Score = 30.8 bits (68), Expect = 0.92,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 275 HRHWLPPYCASCGPLLWQLVSQ 296
           H +  P +C  CG LLW LV Q
Sbjct: 15  HNYMSPTFCDHCGSLLWGLVKQ 36


>pdb|3UEJ|A Chain A, Structural And Functional Characterization Of An
           Anesthetic Binding Site In The Second Cysteine-Rich
           Domain Of Protein Kinase Cdelta
 pdb|3UEJ|B Chain B, Structural And Functional Characterization Of An
           Anesthetic Binding Site In The Second Cysteine-Rich
           Domain Of Protein Kinase Cdelta
 pdb|3UGI|A Chain A, Structural And Functional Characterization Of An
           Anesthetic Binding Site In The Second Cysteine-Rich
           Domain Of Protein Kinase C Delta
 pdb|3UGI|B Chain B, Structural And Functional Characterization Of An
           Anesthetic Binding Site In The Second Cysteine-Rich
           Domain Of Protein Kinase C Delta
 pdb|3UGL|A Chain A, Structural And Functional Characterization Of An
           Anesthetic Binding Site In The Second Cysteine-Rich
           Domain Of Protein Kinase C Delta
 pdb|3UGL|B Chain B, Structural And Functional Characterization Of An
           Anesthetic Binding Site In The Second Cysteine-Rich
           Domain Of Protein Kinase C Delta
          Length = 65

 Score = 28.9 bits (63), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 280 PPYCASCGPLLWQLVSQ 296
           P +C  CG LLW LV Q
Sbjct: 20  PTFCDHCGSLLWGLVKQ 36


>pdb|1PTQ|A Chain A, Protein Kinase C Delta Cys2 Domain
 pdb|1PTR|A Chain A, Protein Kinase C Delta Cys2 Domain Complexed With Phorbol-
           13-Acetate
          Length = 50

 Score = 28.9 bits (63), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 280 PPYCASCGPLLWQLVSQ 296
           P +C  CG LLW LV Q
Sbjct: 11  PTFCDHCGSLLWGLVKQ 27


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.141    0.455 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,392,540
Number of Sequences: 62578
Number of extensions: 300602
Number of successful extensions: 515
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 511
Number of HSP's gapped (non-prelim): 4
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)