Query 021712
Match_columns 308
No_of_seqs 134 out of 1270
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 08:11:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 4.2E-39 1.4E-43 314.8 20.3 263 2-307 88-361 (429)
2 4hyg_A Putative uncharacterize 14.6 6.4E+02 0.022 22.7 8.2 20 26-45 2-21 (301)
3 3qe7_A Uracil permease; uracil 13.4 1.5E+02 0.0051 28.0 4.0 34 7-40 305-338 (429)
4 1bts_A BAND 3 anion transport 9.1 87 0.003 17.8 0.4 23 208-231 3-25 (26)
5 3mp7_B Preprotein translocase 8.6 91 0.0031 21.4 0.4 26 201-226 23-48 (61)
6 2wwb_B SEC61gamma, protein tra 6.1 1.3E+02 0.0044 21.1 0.2 26 201-226 26-51 (68)
7 1rh5_B Preprotein translocase 4.9 1.1E+02 0.0037 21.9 -0.8 26 201-226 27-52 (74)
8 2ifo_A Inovirus; helical virus 4.0 8.5E+02 0.029 15.6 3.1 21 11-31 26-46 (46)
9 2dw3_A Intrinsic membrane prot 3.6 1.1E+03 0.038 16.7 3.7 11 4-14 27-37 (77)
10 2knc_A Integrin alpha-IIB; tra 2.9 1.2E+03 0.042 15.2 3.4 27 63-89 15-41 (54)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=100.00 E-value=4.2e-39 Score=314.78 Aligned_cols=263 Identities=21% Similarity=0.292 Sum_probs=214.3
Q ss_pred hhHHHHHHHHHHHHHHHHhh--hHH-HHHHhhcCcccHHHHHHHHHhhhhhhhccCCCC--c--ccchHHHHHHHHHHHH
Q 021712 2 RELQGAIIVGSIFQSILGFT--GLM-SLFLRLINPVVVAPTVAAIGLAFFSYGFPQAGS--C--VEISIPQILLVLIFAL 74 (308)
Q Consensus 2 ~~~~GavlvaGll~illg~t--g~~-~~l~~~~Pp~V~g~~l~lIGl~l~~~~~~~~gs--~--~~i~~~~~~lv~~v~l 74 (308)
|+++|+++++|+++++++.+ +++ +|++|+|||+|+|.++++||+++++.++++.+. . .....+.. ++.++++
T Consensus 88 ~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~~~~~~~~~~~~~~~-~la~~tl 166 (429)
T 3qe7_A 88 EVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTI-IISITTL 166 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTSSCBTTBCCCHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhccccCCCCccccHHHH-HHHHHHH
Confidence 68999999999999999987 544 799999999999999999999999876654321 0 01111111 1122222
Q ss_pred H-HHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCccchhhhhhhhccccccccccccccccCc
Q 021712 75 Y-LRGISVFGHHLFRIYAVPLSVMIIWAYAFFLTAGGAYNYKGCSPDIPSSNILSDACIKHAYTMKHCRTDVSNAWRTAA 153 (308)
Q Consensus 75 ~-~~~~~~~~k~~~~~~~iLigivvg~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v~~~~ 153 (308)
. +..++++.|+++|++++|+|+++||++++.+ |.. |++ .+.+++
T Consensus 167 ~iii~~~~~~kg~~~~~aiLigivvg~~~a~~~---G~~-------------------------------d~~-~v~~a~ 211 (429)
T 3qe7_A 167 AVTVLGSVLFRGFLAIIPILIGVLVGYALSFAM---GIV-------------------------------DTT-PIINAH 211 (429)
T ss_dssp HHHHHHHHSSSTTTTTHHHHHHHHHHHHHHHHH---HHT-------------------------------TSS-HHHHSC
T ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHHHHHHh---cCC-------------------------------Ccc-cccccc
Confidence 2 2346778899999999999999999999988 332 343 456789
Q ss_pred ccccCcccccCCCcchHHHHHHHHHHHHHHHHHhhhhHHHHHhHhCCCCCCcccccccchhhchHHHHHhhhCCCCCCCc
Q 021712 154 WVRIPYPLQWGIPIFHLRTSLIMIIVSLVASVDSVGTYHTASLLVNSKPPTPRIVSRGIGMEGFCSILAGLWGSGTGSST 233 (308)
Q Consensus 154 ~f~~P~~~~fg~P~f~~~~il~~~~~~lv~~~es~g~~~av~~~~~~~~~~~~~i~r~l~adGl~tilagl~Gtg~~~t~ 233 (308)
|+++|. |..|+||+..+..++++++++++|++|++.++++.++++..++++.||++.+||++|+++|+||+ +|+|+
T Consensus 212 ~~~lP~---~~~P~f~~~~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg-~p~Tt 287 (429)
T 3qe7_A 212 WFALPT---LYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGS-TPNTT 287 (429)
T ss_dssp SSCCCC---CCCCCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTC-CCEEE
T ss_pred cccccC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCC-CCcch
Confidence 999994 57799999999999999999999999999999999985544566789999999999999999996 99999
Q ss_pred cccchhhhhcccccchHHHHHHHHHHHHHHhhhhhhhhhhcccccCCchhhhhhhHHHHHH-HHHHhhh--hhcccC
Q 021712 234 LTENVHTISITKVASRRAVQLGAVFMIVFSFEKSVPFWPLYHRHWLPPYCASCGPLLWQLV-SQICSIL--NQQAFG 307 (308)
Q Consensus 234 ~senvg~i~~t~~~sr~~~~~ag~~li~lgl~p~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~ 307 (308)
|+||+|+++.||++||++...+|+++++++++||++++....+. |..+...-.+|.++ ..+.+++ ++.||.
T Consensus 288 ~~en~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~---~vlgg~~l~lfg~i~~~Gi~~l~~~~v~~~ 361 (429)
T 3qe7_A 288 YGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPL---PVMGGVSLLLYGVIGASGIRVLIESKVDYN 361 (429)
T ss_dssp CHHHHHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCH---HHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999886433 34444444477776 8999999 999985
No 2
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=14.63 E-value=6.4e+02 Score=22.72 Aligned_cols=20 Identities=0% Similarity=-0.056 Sum_probs=11.8
Q ss_pred HHHhhcCcccHHHHHHHHHh
Q 021712 26 LFLRLINPVVVAPTVAAIGL 45 (308)
Q Consensus 26 ~l~~~~Pp~V~g~~l~lIGl 45 (308)
+.+++.|...+..+...+++
T Consensus 2 ~~~~~~~~~~~~~~~l~vql 21 (301)
T 4hyg_A 2 QIRDWLPLLGMPLMLLFVQI 21 (301)
T ss_dssp --CCSSTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 34567777776666666553
No 3
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=13.42 E-value=1.5e+02 Score=28.04 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHH
Q 021712 7 AIIVGSIFQSILGFTGLMSLFLRLINPVVVAPTV 40 (308)
Q Consensus 7 avlvaGll~illg~tg~~~~l~~~~Pp~V~g~~l 40 (308)
+...+|++.+++++.+-+..+...+|..+.|.+.
T Consensus 305 ~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~ 338 (429)
T 3qe7_A 305 VIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVS 338 (429)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 3578899999999887778899999987777653
No 4
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=9.08 E-value=87 Score=17.79 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=16.7
Q ss_pred ccccchhhchHHHHHhhhCCCCCC
Q 021712 208 VSRGIGMEGFCSILAGLWGSGTGS 231 (308)
Q Consensus 208 i~r~l~adGl~tilagl~Gtg~~~ 231 (308)
+++.+.+++++.++-++|++ -|.
T Consensus 3 v~E~i~s~ai~Gi~f~lf~g-QPL 25 (26)
T 1bts_A 3 VSELLISTAVQGILFALLGA-XXX 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----
T ss_pred hhHHHHHHHHHHHHHHHHhc-ccC
Confidence 46778889999999999984 664
No 5
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=8.58 E-value=91 Score=21.42 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=23.0
Q ss_pred CCCCcccccccchhhchHHHHHhhhC
Q 021712 201 KPPTPRIVSRGIGMEGFCSILAGLWG 226 (308)
Q Consensus 201 ~~~~~~~i~r~l~adGl~tilagl~G 226 (308)
++||+++..+...+.|+|-.+-|++|
T Consensus 23 ~KPd~~Ef~~iak~~~iG~~i~G~iG 48 (61)
T 3mp7_B 23 KKPNWATYKRAAKITGLGIILIGLIG 48 (61)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999887
No 6
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=6.07 E-value=1.3e+02 Score=21.12 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=23.2
Q ss_pred CCCCcccccccchhhchHHHHHhhhC
Q 021712 201 KPPTPRIVSRGIGMEGFCSILAGLWG 226 (308)
Q Consensus 201 ~~~~~~~i~r~l~adGl~tilagl~G 226 (308)
++||+++..+...+.|+|-.+-|+.|
T Consensus 26 ~KPdr~Ef~~iak~~~iG~~i~G~IG 51 (68)
T 2wwb_B 26 TKPDRKEFQKIAMATAIGFAIMGFIG 51 (68)
T ss_dssp CCCCTHHHHHHHHHSSHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999887
No 7
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=4.90 E-value=1.1e+02 Score=21.95 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=22.8
Q ss_pred CCCCcccccccchhhchHHHHHhhhC
Q 021712 201 KPPTPRIVSRGIGMEGFCSILAGLWG 226 (308)
Q Consensus 201 ~~~~~~~i~r~l~adGl~tilagl~G 226 (308)
++||+++..+...+.|+|-.+-|++|
T Consensus 27 ~KPdr~EF~~iak~~~iG~~imG~IG 52 (74)
T 1rh5_B 27 KKPTKDEYLAVAKVTALGISLLGIIG 52 (74)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999888
No 8
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=4.04 E-value=8.5e+02 Score=15.57 Aligned_cols=21 Identities=10% Similarity=0.110 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhhHHHHHHhhc
Q 021712 11 GSIFQSILGFTGLMSLFLRLI 31 (308)
Q Consensus 11 aGll~illg~tg~~~~l~~~~ 31 (308)
++.+..++-....++++||.+
T Consensus 26 G~aVLgV~v~i~v~k~IRral 46 (46)
T 2ifo_A 26 GGAVLTVMVGIKVYKWVRRAM 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 344444444446678888754
No 9
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=3.58 E-value=1.1e+03 Score=16.73 Aligned_cols=11 Identities=36% Similarity=0.733 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 021712 4 LQGAIIVGSIF 14 (308)
Q Consensus 4 ~~GavlvaGll 14 (308)
+-|+-..+..+
T Consensus 27 lkGAg~AAv~f 37 (77)
T 2dw3_A 27 MKGAGWAGGVF 37 (77)
T ss_dssp HHHHHHHHHHH
T ss_pred HhcccHHHHHH
Confidence 33443333333
No 10
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=2.86 E-value=1.2e+03 Score=15.22 Aligned_cols=27 Identities=11% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhh
Q 021712 63 IPQILLVLIFALYLRGISVFGHHLFRI 89 (308)
Q Consensus 63 ~~~~~lv~~v~l~~~~~~~~~k~~~~~ 89 (308)
.....+..++.+.++.+..|+-|++|+
T Consensus 15 Ii~svl~GLllL~li~~~LwK~GFFkR 41 (54)
T 2knc_A 15 VLVGVLGGLLLLTILVLAMWKVGFFKR 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcccC
Done!