Query 021712
Match_columns 308
No_of_seqs 134 out of 1270
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 08:11:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021712.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021712hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zs4a1 a.35.1.9 (A:4-81) Regu 6.4 1.2E+02 0.0091 19.9 2.0 18 79-96 37-54 (78)
2 d2j5ha1 g.3.11.7 (A:1-39) Crip 3.7 1.2E+02 0.0085 17.4 0.3 13 274-286 8-20 (39)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 2.8 8.3E+02 0.06 18.8 5.4 22 205-226 58-79 (447)
4 d1xrda1 f.3.1.1 (A:1-52) Light 2.7 5.1E+02 0.037 15.5 2.6 23 249-271 11-33 (52)
5 d2e74e1 f.23.24.1 (E:1-32) Pet 2.1 5.7E+02 0.041 13.2 2.4 14 91-104 13-26 (32)
6 d2qzga1 a.29.14.1 (A:4-91) Unc 2.1 3.7E+02 0.027 18.0 1.4 16 286-301 72-87 (88)
7 d1zeea1 a.266.1.2 (A:6-392) Hy 1.9 1.3E+03 0.094 19.2 5.1 49 184-233 72-120 (387)
8 d1k8ba_ d.241.1.1 (A:) Transla 1.8 4.1E+02 0.03 15.7 1.2 11 294-304 14-24 (52)
9 d2gnoa1 a.80.1.1 (A:209-306) g 1.8 4.4E+02 0.032 17.2 1.3 6 295-300 67-72 (98)
10 d1kbha_ a.153.1.1 (A:) Nuclear 1.7 5.6E+02 0.041 14.8 1.6 14 293-306 9-22 (47)
No 1
>d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage lambda [TaxId: 10710]}
Probab=6.38 E-value=1.2e+02 Score=19.90 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=14.5
Q ss_pred HHHhhcchhhhhhHHHHH
Q 021712 79 ISVFGHHLFRIYAVPLSV 96 (308)
Q Consensus 79 ~~~~~k~~~~~~~iLigi 96 (308)
+++|+.+|+.++++++++
T Consensus 37 iSRwK~~f~~q~smlLAv 54 (78)
T d1zs4a1 37 ISRWKRDWIPKFSMLLAV 54 (78)
T ss_dssp HHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 467888999888888765
No 2
>d2j5ha1 g.3.11.7 (A:1-39) Cripto growth factor {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.72 E-value=1.2e+02 Score=17.41 Aligned_cols=13 Identities=46% Similarity=1.275 Sum_probs=9.6
Q ss_pred cccccCCchhhhh
Q 021712 274 YHRHWLPPYCASC 286 (308)
Q Consensus 274 ~~~~~~~~~~~~~ 286 (308)
-|-+|+|..|..|
T Consensus 8 pHg~w~~k~CslC 20 (39)
T d2j5ha1 8 LHGTWLPKKCSLC 20 (39)
T ss_dssp CCTTCSSCCCCCC
T ss_pred cCCceecccceEE
Confidence 3668999888765
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=2.83 E-value=8.3e+02 Score=18.75 Aligned_cols=22 Identities=0% Similarity=-0.224 Sum_probs=9.8
Q ss_pred cccccccchhhchHHHHHhhhC
Q 021712 205 PRIVSRGIGMEGFCSILAGLWG 226 (308)
Q Consensus 205 ~~~i~r~l~adGl~tilagl~G 226 (308)
+.+++-......++..++.++.
T Consensus 58 ~~~~g~~~s~~~~~~~~~~~~~ 79 (447)
T d1pw4a_ 58 RGDLGFALSGISIAYGFSKFIM 79 (447)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333433444444445544444
No 4
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=2.66 E-value=5.1e+02 Score=15.49 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhh
Q 021712 249 RRAVQLGAVFMIVFSFEKSVPFW 271 (308)
Q Consensus 249 r~~~~~ag~~li~lgl~p~~~a~ 271 (308)
|++...-++|+.++++.=-|.-+
T Consensus 11 Rr~lva~~~fL~~LAl~IHfiLL 33 (52)
T d1xrda1 11 RQALVGLATFLFVLALLIHFILL 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777778888887776544433
No 5
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.09 E-value=5.7e+02 Score=13.22 Aligned_cols=14 Identities=14% Similarity=0.233 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHH
Q 021712 91 AVPLSVMIIWAYAF 104 (308)
Q Consensus 91 ~iLigivvg~~~a~ 104 (308)
+...|+.+|.+++.
T Consensus 13 alffgiavgiifai 26 (32)
T d2e74e1 13 ALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhheeeE
Confidence 45556666666553
No 6
>d2qzga1 a.29.14.1 (A:4-91) Uncharacterized protein MMP1188 {Methanococcus maripaludis [TaxId: 39152]}
Probab=2.09 E-value=3.7e+02 Score=17.98 Aligned_cols=16 Identities=25% Similarity=0.549 Sum_probs=10.5
Q ss_pred hhhHHHHHHHHHHhhh
Q 021712 286 CGPLLWQLVSQICSIL 301 (308)
Q Consensus 286 ~~~~~~~~~~~~~~~~ 301 (308)
..+++|+.+|++-++.
T Consensus 72 ~Rt~iw~ivs~LE~ik 87 (88)
T d2qzga1 72 TRTQIWGIVSELETIK 87 (88)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4567777777766553
No 7
>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella oneidensis [TaxId: 70863]}
Probab=1.89 E-value=1.3e+03 Score=19.16 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=37.2
Q ss_pred HHHhhhhHHHHHhHhCCCCCCcccccccchhhchHHHHHhhhCCCCCCCc
Q 021712 184 SVDSVGTYHTASLLVNSKPPTPRIVSRGIGMEGFCSILAGLWGSGTGSST 233 (308)
Q Consensus 184 ~~es~g~~~av~~~~~~~~~~~~~i~r~l~adGl~tilagl~Gtg~~~t~ 233 (308)
.+..+|-++|..|-.+-.+|.++..+...-+.+++-=+++-+|. +|=-+
T Consensus 72 llgnvg~ym~acrrh~i~ep~re~~~p~~eas~la~~~~as~gv-~prf~ 120 (387)
T d1zeea1 72 LLGNVGLYMAACRRHEITEPTRETTSPLLEASALAMHIGASIGV-TPRFA 120 (387)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTTCSSCSCHHHHHHHHHHHHHHTS-CSSCC
T ss_pred HHhhhHHHHHHHHhccCCCccccccCchhhhHHHHHHHHHhcCC-Cchhh
Confidence 35677888898888774455555567888899999999999996 66433
No 8
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=1.80 E-value=4.1e+02 Score=15.65 Aligned_cols=11 Identities=9% Similarity=0.371 Sum_probs=7.8
Q ss_pred HHHHHhhhhhc
Q 021712 294 VSQICSILNQQ 304 (308)
Q Consensus 294 ~~~~~~~~~~~ 304 (308)
+.++|+.|||.
T Consensus 14 f~eI~~~L~R~ 24 (52)
T d1k8ba_ 14 FRELAKAVNRD 24 (52)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHhCCC
Confidence 46778888774
No 9
>d2gnoa1 a.80.1.1 (A:209-306) gamma subunit {Thermotoga maritima [TaxId: 2336]}
Probab=1.77 E-value=4.4e+02 Score=17.20 Aligned_cols=6 Identities=50% Similarity=0.301 Sum_probs=2.2
Q ss_pred HHHHhh
Q 021712 295 SQICSI 300 (308)
Q Consensus 295 ~~~~~~ 300 (308)
|+.+||
T Consensus 67 sfldsi 72 (98)
T d2gnoa1 67 SFLDSI 72 (98)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 10
>d1kbha_ a.153.1.1 (A:) Nuclear receptor coactivator ACTR {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.68 E-value=5.6e+02 Score=14.83 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=10.1
Q ss_pred HHHHHHhhhhhccc
Q 021712 293 LVSQICSILNQQAF 306 (308)
Q Consensus 293 ~~~~~~~~~~~~~~ 306 (308)
+..|.++.|+.-|+
T Consensus 9 LldQL~s~L~~~D~ 22 (47)
T d1kbha_ 9 LLDQLHTLLSNTDA 22 (47)
T ss_dssp HHHHHHHHTTSSCC
T ss_pred HHHHHHHHHhcCch
Confidence 45788888887665
Done!