Query 021713
Match_columns 308
No_of_seqs 132 out of 163
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:12:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 89.1 1 3.6E-05 27.4 5.1 28 92-119 3-30 (33)
2 3csx_A Putative uncharacterize 62.0 4.9 0.00017 30.3 2.6 57 88-153 12-68 (81)
3 2yy0_A C-MYC-binding protein; 61.7 13 0.00045 25.6 4.7 35 88-122 16-50 (53)
4 2js5_A Uncharacterized protein 56.3 12 0.00042 27.4 3.9 54 91-153 3-56 (71)
5 3ra3_B P2F; coiled coil domain 55.1 5.7 0.0002 23.3 1.5 14 91-104 14-27 (28)
6 2jee_A YIIU; FTSZ, septum, coi 52.8 51 0.0018 24.7 6.9 50 91-140 20-77 (81)
7 2zqm_A Prefoldin beta subunit 52.2 76 0.0026 24.2 8.7 35 91-125 77-111 (117)
8 2v71_A Nuclear distribution pr 50.3 1.2E+02 0.0042 26.1 11.3 29 92-120 89-117 (189)
9 2l5g_A GPS2 protein, G protein 43.6 25 0.00084 22.6 3.3 25 90-114 14-38 (38)
10 2wt7_A Proto-oncogene protein 41.4 70 0.0024 22.3 5.9 33 91-123 23-55 (63)
11 3tnu_B Keratin, type II cytosk 41.3 47 0.0016 26.5 5.6 33 91-123 43-75 (129)
12 1fmh_A General control protein 40.4 60 0.0021 19.6 4.6 28 92-119 2-29 (33)
13 3tnu_A Keratin, type I cytoske 39.7 51 0.0018 26.3 5.6 33 91-123 45-77 (131)
14 2aze_B Transcription factor E2 37.0 55 0.0019 25.5 5.2 37 91-127 6-42 (106)
15 3q8t_A Beclin-1; autophagy, AT 36.8 70 0.0024 24.4 5.7 32 91-122 4-35 (96)
16 2l2l_B Methyl-CPG-binding doma 36.6 44 0.0015 21.3 3.6 17 23-39 6-22 (36)
17 2xdj_A Uncharacterized protein 36.3 74 0.0025 23.8 5.6 32 92-123 28-59 (83)
18 1t2k_D Cyclic-AMP-dependent tr 33.6 1.1E+02 0.0038 21.0 5.9 33 91-123 22-54 (61)
19 3twe_A Alpha4H; unknown functi 33.2 52 0.0018 19.1 3.2 16 108-123 4-19 (27)
20 3lay_A Zinc resistance-associa 32.3 2.3E+02 0.0078 23.9 11.5 34 88-124 110-143 (175)
21 4etp_A Kinesin-like protein KA 30.2 1.6E+02 0.0056 27.9 8.3 28 92-119 32-59 (403)
22 3na7_A HP0958; flagellar bioge 29.4 2.9E+02 0.0098 24.2 10.0 32 91-122 90-121 (256)
23 1jnm_A Proto-oncogene C-JUN; B 28.8 1.2E+02 0.0041 20.9 5.4 32 91-122 22-53 (62)
24 1ci6_A Transcription factor AT 26.7 1.4E+02 0.0047 20.8 5.4 32 91-122 23-54 (63)
25 2dgc_A Protein (GCN4); basic d 26.3 88 0.003 22.0 4.3 31 91-121 30-60 (63)
26 1bb1_B Designed, thermostable 26.2 75 0.0026 19.5 3.3 20 90-109 15-34 (36)
27 1kd8_A GABH AIV, GCN4 acid bas 26.2 1.3E+02 0.0044 19.0 5.0 32 92-123 2-33 (36)
28 1gd2_E Transcription factor PA 25.3 1.1E+02 0.0037 22.1 4.7 33 90-122 28-60 (70)
29 2k48_A Nucleoprotein; viral pr 25.1 2.5E+02 0.0084 22.0 9.6 39 21-59 29-67 (107)
30 3vkg_A Dynein heavy chain, cyt 24.7 4.2E+02 0.014 32.4 11.8 29 28-56 2015-2043(3245)
31 4fi5_A Nucleoprotein; structur 24.4 2.6E+02 0.009 22.1 9.0 82 27-132 22-103 (113)
32 4g1a_A AQ-C16C19 peptide; heli 23.8 40 0.0014 20.3 1.7 16 92-107 1-16 (32)
33 1go4_E MAD1 (mitotic arrest de 23.4 87 0.003 24.3 4.1 86 23-110 8-94 (100)
34 1t3j_A Mitofusin 1; coiled coi 22.8 2E+02 0.0069 22.1 6.0 18 90-107 53-70 (96)
35 2jo8_A Serine/threonine-protei 20.6 2E+02 0.0069 19.6 5.0 30 94-126 13-42 (51)
36 2xu6_A MDV1 coiled coil; prote 20.4 2.3E+02 0.0078 20.7 5.5 32 90-121 20-51 (72)
37 1dh3_A Transcription factor CR 20.2 1.7E+02 0.0059 19.8 4.7 30 91-120 22-51 (55)
38 3nmd_A CGMP dependent protein 20.2 95 0.0032 22.7 3.5 26 92-117 41-66 (72)
39 1g6u_A Domain swapped dimer; d 20.1 1.7E+02 0.0058 19.0 4.3 22 90-111 19-40 (48)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=89.12 E-value=1 Score=27.43 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 92 DIKIMEAEVQALEELSKQLFLEIYELRQ 119 (308)
Q Consensus 92 ~i~~L~~EI~~Le~l~~~L~~el~~l~~ 119 (308)
||++|+|||.+|+.--..|-.|+..|++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6888999998888777777777777664
No 2
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=61.95 E-value=4.9 Score=30.34 Aligned_cols=57 Identities=14% Similarity=0.300 Sum_probs=35.9
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHhhhHHHHHHHHHHHHH
Q 021713 88 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYALSIYCVYKMIKS 153 (308)
Q Consensus 88 ~~~~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~~~s~T~~Gr~~~~~g~~fsiYCvyKi~~t 153 (308)
+..+++.+|+.||.-|.....++-.+||||-.. +.-.+-.++.+.=-.|-+|+=+..
T Consensus 12 ~t~~di~eLkkevkKL~~~A~q~kmdLHDLaEd---------LP~~w~~i~~vA~~tyda~~~l~~ 68 (81)
T 3csx_A 12 PTPEAVADLKKKVRKLNSKAGQMKMDLHDLAEG---------LPTDYENLVETAEKTYEIFRELDQ 68 (81)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHH---------TTTTGGGHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---------chhhHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999998654 122222355555555655554443
No 3
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=61.70 E-value=13 Score=25.56 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=29.7
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 88 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKE 122 (308)
Q Consensus 88 ~~~~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~ 122 (308)
++..+..+|++|.+.|+.=-..|-.++.+++.+..
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999998899889988887654
No 4
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=56.30 E-value=12 Score=27.44 Aligned_cols=54 Identities=13% Similarity=0.281 Sum_probs=38.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHhhhHHHHHHHHHHHHH
Q 021713 91 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYALSIYCVYKMIKS 153 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~~~s~T~~Gr~~~~~g~~fsiYCvyKi~~t 153 (308)
+++.+|+.||.-|.....++-.+|+||-.. ++..+-.++.+.=..|-+|+=...
T Consensus 3 edi~eLkkevkKL~~~A~q~kmdLHDLaEd---------LP~~w~~i~~vA~~tyda~~~l~~ 56 (71)
T 2js5_A 3 EGAEELKAKLKKLNAQATALKMDLHDLAED---------LPTGWNRIMEVAEKTYEAYRQLDE 56 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHS---------TTTSGGGHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHhcc---------chhhHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999998642 222233355666666666655443
No 5
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=55.06 E-value=5.7 Score=23.30 Aligned_cols=14 Identities=50% Similarity=0.688 Sum_probs=7.5
Q ss_pred HhHHHHHHHHHHHH
Q 021713 91 QDIKIMEAEVQALE 104 (308)
Q Consensus 91 ~~i~~L~~EI~~Le 104 (308)
+||++|+-||.+||
T Consensus 14 qeiaaleyeiaale 27 (28)
T 3ra3_B 14 QEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 34555555555554
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=52.80 E-value=51 Score=24.68 Aligned_cols=50 Identities=22% Similarity=0.450 Sum_probs=33.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH-HHhccchHhHHHHHhhh
Q 021713 91 QDIKIMEAEVQALEELSKQLFLEIYELRQ-------AKEA-AAYSRTWRGHMQNLLGY 140 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~-------~~~~-~~~s~T~~Gr~~~~~g~ 140 (308)
+.|.-|++||+.|+.=..+|..+..+++. +-++ .+.-..|..|+-.++|-
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788999999999988888888877443 2222 12244566666666654
No 7
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=52.22 E-value=76 Score=24.16 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=24.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 91 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAA 125 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~~ 125 (308)
..+..++.+|+.|+.-...+-.++.+++......-
T Consensus 77 ~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 77 EKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777777777776665544
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=50.27 E-value=1.2e+02 Score=26.05 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 92 DIKIMEAEVQALEELSKQLFLEIYELRQA 120 (308)
Q Consensus 92 ~i~~L~~EI~~Le~l~~~L~~el~~l~~~ 120 (308)
.++.|+.||..|.....+|-..+.+|+..
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~ 117 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQA 117 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888887777776643
No 9
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=43.56 E-value=25 Score=22.60 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=21.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHH
Q 021713 90 EQDIKIMEAEVQALEELSKQLFLEI 114 (308)
Q Consensus 90 ~~~i~~L~~EI~~Le~l~~~L~~el 114 (308)
.++|..|+.+.++|.+=.-|||.+|
T Consensus 14 keQi~~l~~kl~~LkeEKHQLFlQL 38 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQLFLQL 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4688899999999999899998764
No 10
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=41.42 E-value=70 Score=22.30 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=25.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 91 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 123 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~ 123 (308)
+.+..|+.|++.|+.-...|-.++..|+.+...
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888887776554
No 11
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=41.34 E-value=47 Score=26.47 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=26.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 91 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 123 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~ 123 (308)
..++.|+.||++++.+..+|=..+.+++.+...
T Consensus 43 r~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~ 75 (129)
T 3tnu_B 43 RMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL 75 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 356788899999999999998888887766554
No 12
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=40.40 E-value=60 Score=19.62 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 92 DIKIMEAEVQALEELSKQLFLEIYELRQ 119 (308)
Q Consensus 92 ~i~~L~~EI~~Le~l~~~L~~el~~l~~ 119 (308)
+.++|+.|+..-|.-..||-.|+..|+.
T Consensus 2 evaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4567888888888888888888777653
No 13
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.65 E-value=51 Score=26.33 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=27.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 91 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 123 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~ 123 (308)
..++.|+.||+++..+..+|-..+.+++.+...
T Consensus 45 r~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~ 77 (131)
T 3tnu_A 45 RTMQNLEIELQSQLSMKASLENSLEETKGRYCM 77 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 467889999999999999998888888766554
No 14
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=37.01 E-value=55 Score=25.53 Aligned_cols=37 Identities=11% Similarity=0.040 Sum_probs=28.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021713 91 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYS 127 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~~~s 127 (308)
.++..|++|++.|+..++.|=.-+..+++..+.....
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted 42 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 42 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4577899999999999998888887777666665544
No 15
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=36.80 E-value=70 Score=24.40 Aligned_cols=32 Identities=16% Similarity=0.331 Sum_probs=18.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 91 QDIKIMEAEVQALEELSKQLFLEIYELRQAKE 122 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~ 122 (308)
.++.+|+.|+..|+.=+..+..+|.++...++
T Consensus 4 ~~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~ 35 (96)
T 3q8t_A 4 SDSEQLQRELKELALEEERLIQELEDVEKNRK 35 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34455666666666666666666655554433
No 16
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=36.64 E-value=44 Score=21.30 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=14.4
Q ss_pred cCCHHHHHHHHHHHHHH
Q 021713 23 EIDESEIKALERQLMQS 39 (308)
Q Consensus 23 ~Vt~~dI~~~e~~l~~t 39 (308)
.|||.||...|.+...+
T Consensus 6 ~Vte~DIr~QE~rV~~a 22 (36)
T 2l2l_B 6 IVTDEDIRKQEERVQQV 22 (36)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred eeCHHHHHHHHHHHHHH
Confidence 58999999999887764
No 17
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=36.33 E-value=74 Score=23.77 Aligned_cols=32 Identities=3% Similarity=0.152 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 92 DIKIMEAEVQALEELSKQLFLEIYELRQAKEA 123 (308)
Q Consensus 92 ~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~ 123 (308)
++..|+.||+.|.-.-..+-.++..++.+++.
T Consensus 28 Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 28 QLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45566666666666655666666666554443
No 18
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=33.59 E-value=1.1e+02 Score=20.95 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=24.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 91 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 123 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~ 123 (308)
+.+..|+.+++.|+.-...|-.++..|+.+...
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888888888888888877766543
No 19
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=33.24 E-value=52 Score=19.05 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 021713 108 KQLFLEIYELRQAKEA 123 (308)
Q Consensus 108 ~~L~~el~~l~~~~~~ 123 (308)
.+||.||.+|+.+.+.
T Consensus 4 delykeledlqerlrk 19 (27)
T 3twe_A 4 DELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678888888776654
No 20
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=32.35 E-value=2.3e+02 Score=23.91 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=23.8
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 88 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 124 (308)
Q Consensus 88 ~~~~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~ 124 (308)
.+.+.+++|..||..|+. ++..+-.+++.+.+..
T Consensus 110 ~DeakI~aL~~Ei~~Lr~---qL~~~R~k~~~em~Ke 143 (175)
T 3lay_A 110 PDTAKINAVAKEMESLGQ---KLDEQRVKRDVAMAQA 143 (175)
T ss_dssp CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 446678888888876665 7777777777666444
No 21
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=30.19 E-value=1.6e+02 Score=27.89 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 92 DIKIMEAEVQALEELSKQLFLEIYELRQ 119 (308)
Q Consensus 92 ~i~~L~~EI~~Le~l~~~L~~el~~l~~ 119 (308)
++++++++...-|.+++.|+.++.||+.
T Consensus 32 ~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 32 GMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4556677777778888999999988863
No 22
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=29.42 E-value=2.9e+02 Score=24.17 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=19.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 91 QDIKIMEAEVQALEELSKQLFLEIYELRQAKE 122 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~ 122 (308)
.++.+|+.||+.++.-...+-.++.++..+.+
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie 121 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIK 121 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777776665555555555544443
No 23
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=28.79 E-value=1.2e+02 Score=20.89 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=24.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 91 QDIKIMEAEVQALEELSKQLFLEIYELRQAKE 122 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~ 122 (308)
+.+..|+.+++.|+.-...|-.++..|+.+..
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888888776653
No 24
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.74 E-value=1.4e+02 Score=20.83 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=22.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 91 QDIKIMEAEVQALEELSKQLFLEIYELRQAKE 122 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~ 122 (308)
+++..|+.|+..|+.-..+|-.++..|+.+..
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777777766543
No 25
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=26.34 E-value=88 Score=21.96 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=24.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 91 QDIKIMEAEVQALEELSKQLFLEIYELRQAK 121 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~ 121 (308)
+.+..|+.+++.|+.-...|-.++..|+...
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999999988888888888887654
No 26
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=26.20 E-value=75 Score=19.54 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=14.9
Q ss_pred hHhHHHHHHHHHHHHHHHHH
Q 021713 90 EQDIKIMEAEVQALEELSKQ 109 (308)
Q Consensus 90 ~~~i~~L~~EI~~Le~l~~~ 109 (308)
++++++.+.||.+++.+-.|
T Consensus 15 eeeiqaikeeiaaikyliaq 34 (36)
T 1bb1_B 15 EEEIQAIKEEIAAIKYLIAQ 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46778888888888877654
No 27
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=26.19 E-value=1.3e+02 Score=19.05 Aligned_cols=32 Identities=28% Similarity=0.354 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 92 DIKIMEAEVQALEELSKQLFLEIYELRQAKEA 123 (308)
Q Consensus 92 ~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~ 123 (308)
.+++|+.+++.|..=...|-.|+..|+.....
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 35678888888888778888888877765543
No 28
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.29 E-value=1.1e+02 Score=22.14 Aligned_cols=33 Identities=36% Similarity=0.447 Sum_probs=24.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 90 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKE 122 (308)
Q Consensus 90 ~~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~ 122 (308)
...+..|+.++..|+....++-.|...|+....
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~ 60 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVR 60 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888777776666664443
No 29
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=25.12 E-value=2.5e+02 Score=21.98 Aligned_cols=39 Identities=10% Similarity=0.217 Sum_probs=32.8
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021713 21 IREIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDR 59 (308)
Q Consensus 21 ~r~Vt~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~ 59 (308)
.-|.|-+||..+|+.+.+.-..|..-|++|..++..++.
T Consensus 29 ~~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~ 67 (107)
T 2k48_A 29 IDPFTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEV 67 (107)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 457888999999999999988888888999888877553
No 30
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=24.69 E-value=4.2e+02 Score=32.36 Aligned_cols=29 Identities=14% Similarity=-0.024 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021713 28 EIKALERQLMQSIETCIAKKKKIILCQME 56 (308)
Q Consensus 28 dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~ 56 (308)
+++.+|+++..+.+.+.+++.+++.++.+
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~ 2043 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIVATITALEKS 2043 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666555544
No 31
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=24.45 E-value=2.6e+02 Score=22.05 Aligned_cols=82 Identities=10% Similarity=0.129 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhhhhhhhccccccCCcchhHhHHHHHHHHHHHHHH
Q 021713 27 SEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEEL 106 (308)
Q Consensus 27 ~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~L~~EI~~Le~l 106 (308)
-+|..+|..+.+.-..|..-|++|..++..++. ...+.++ .-+..-+.+|++|+.-
T Consensus 22 ~~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~--DPDevNK----------------------~tl~~R~~~Vs~lq~K 77 (113)
T 4fi5_A 22 MTMEELQREINAHEGQLVIARQKVRDAEKQYEK--DPDELNK----------------------RTLTDREGVAVSIQAK 77 (113)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHH----------------------HHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcHHHH----------------------HHHHHHHHHHHHHHHH
Confidence 357777777777777777777888877766553 1100111 0122336678888887
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHh
Q 021713 107 SKQLFLEIYELRQAKEAAAYSRTWRG 132 (308)
Q Consensus 107 ~~~L~~el~~l~~~~~~~~~s~T~~G 132 (308)
-.+|-..|.+.....+.....+-+.|
T Consensus 78 iaeLKrqLAd~va~~k~~~k~~DPTG 103 (113)
T 4fi5_A 78 IDELKRQLADRIATGKNLGKEQDPTG 103 (113)
T ss_dssp HHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHhcccccCCCCCCC
Confidence 77777777776654444333343433
No 32
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=23.80 E-value=40 Score=20.25 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHH
Q 021713 92 DIKIMEAEVQALEELS 107 (308)
Q Consensus 92 ~i~~L~~EI~~Le~l~ 107 (308)
+|++|++.|.+||.-.
T Consensus 1 qiaaleqkiaaleqkc 16 (32)
T 4g1a_A 1 QIAALEQKIAALEQKC 16 (32)
T ss_dssp -CHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHH
Confidence 3567888888887643
No 33
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=23.35 E-value=87 Score=24.32 Aligned_cols=86 Identities=12% Similarity=0.126 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhccchhhhhhhhhhhhhhccccccCCcchhHhHHHHHHHHH
Q 021713 23 EIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDR-IQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQ 101 (308)
Q Consensus 23 ~Vt~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~L~~EI~ 101 (308)
|+|..++..+.+.++..-.--..=|++++.++.+... ...+.-++...-.+|=.. .-++........++..|++|++
T Consensus 8 ~~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~--NPa~~a~~~~~~~~e~Lq~E~e 85 (100)
T 1go4_E 8 LFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSL--NPTSVARQRLREDHSQLQAECE 85 (100)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESS--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecC--ChHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 021713 102 ALEELSKQL 110 (308)
Q Consensus 102 ~Le~l~~~L 110 (308)
.|...-+.|
T Consensus 86 rLr~~v~~l 94 (100)
T 1go4_E 86 RLRGLLRAM 94 (100)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHH
No 34
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=22.82 E-value=2e+02 Score=22.07 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=10.5
Q ss_pred hHhHHHHHHHHHHHHHHH
Q 021713 90 EQDIKIMEAEVQALEELS 107 (308)
Q Consensus 90 ~~~i~~L~~EI~~Le~l~ 107 (308)
..||++|+.||..||.+.
T Consensus 53 ~~EI~~L~~eI~~LE~iq 70 (96)
T 1t3j_A 53 EEEIARLSKEIDQLEKMQ 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666666666666553
No 35
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=20.65 E-value=2e+02 Score=19.55 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021713 94 KIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 126 (308)
Q Consensus 94 ~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~~~ 126 (308)
.+|++-. ..+-.+|-.|+.+++.++++.+.
T Consensus 13 eEL~~rl---~~Ld~~Me~Ei~elr~RY~~KRq 42 (51)
T 2jo8_A 13 EDLQKRL---LALDPMMEQEIEEIRQKYQSKRQ 42 (51)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHccHHHHHHHHHHHHHHHHhHh
Confidence 3555555 44555899999999998887654
No 36
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=20.45 E-value=2.3e+02 Score=20.68 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=24.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 90 EQDIKIMEAEVQALEELSKQLFLEIYELRQAK 121 (308)
Q Consensus 90 ~~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~ 121 (308)
.+||.++...|+-|..|++-++.-++.+++..
T Consensus 20 ~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE 51 (72)
T 2xu6_A 20 MSEIRDIEVEVENLRQKKEKLLGKIANIEQNQ 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 45778888888888888888888777776543
No 37
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=20.19 E-value=1.7e+02 Score=19.79 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=24.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 91 QDIKIMEAEVQALEELSKQLFLEIYELRQA 120 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~~ 120 (308)
+.+..|+.++..|+.-...|..++..|...
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999888888888887654
No 38
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=20.16 E-value=95 Score=22.71 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 92 DIKIMEAEVQALEELSKQLFLEIYEL 117 (308)
Q Consensus 92 ~i~~L~~EI~~Le~l~~~L~~el~~l 117 (308)
.|..|+.+++..++.-+.|-.+|++.
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666666666666665554
No 39
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.15 E-value=1.7e+02 Score=18.99 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=15.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHH
Q 021713 90 EQDIKIMEAEVQALEELSKQLF 111 (308)
Q Consensus 90 ~~~i~~L~~EI~~Le~l~~~L~ 111 (308)
.+|+++|+.|..+||.--..|-
T Consensus 19 peelaaleselqalekklaalk 40 (48)
T 1g6u_A 19 PEELAALESELQALEKKLAALK 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888876444333
Done!