Query 021713
Match_columns 308
No_of_seqs 132 out of 163
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 08:12:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021713.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021713hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gqea_ e.38.1.1 (A:) Polypept 43.0 63 0.0046 28.2 9.9 32 27-58 6-39 (362)
2 d2azeb1 e.63.1.2 (B:201-301) T 34.4 34 0.0025 24.7 5.4 31 93-123 3-33 (101)
3 d2azeb1 e.63.1.2 (B:201-301) T 17.5 1E+02 0.0073 21.9 5.2 37 90-126 7-43 (101)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 15.7 1.7E+02 0.013 20.2 10.2 31 91-121 72-102 (107)
5 d1ydxa2 d.287.1.2 (A:194-374) 14.8 75 0.0055 23.2 4.1 15 103-117 151-165 (181)
6 d3e9va1 d.370.1.1 (A:9-128) NG 13.5 34 0.0025 25.5 1.6 40 239-278 9-48 (120)
7 d1nlwa_ a.38.1.1 (A:) Mad prot 13.5 1.3E+02 0.0098 19.6 4.8 33 90-122 46-78 (79)
8 d1nkpa_ a.38.1.1 (A:) Myc prot 13.1 1.9E+02 0.014 19.2 5.6 33 90-122 51-83 (88)
9 d1ydxa1 d.287.1.2 (A:1-193) Bi 12.6 94 0.0069 22.8 4.1 21 93-113 160-180 (193)
10 d1io1a_ e.32.1.1 (A:) Phase 1 12.4 2.3E+02 0.017 22.4 7.0 31 90-134 50-80 (395)
No 1
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=43.05 E-value=63 Score=28.20 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhh
Q 021713 27 SEIKALERQLMQSIE--TCIAKKKKIILCQMEMD 58 (308)
Q Consensus 27 ~dI~~~e~~l~~t~~--~l~~Kk~rl~~~~~~~~ 58 (308)
.+|..+.+++..... .+..||.|+..++.+++
T Consensus 6 ~~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~ls 39 (362)
T d1gqea_ 6 NRIQDLTERSDVLRGYLDYDAKKERLEEVNAELE 39 (362)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhc
Confidence 456677777666555 46778899999987765
No 2
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.36 E-value=34 Score=24.66 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 93 IKIMEAEVQALEELSKQLFLEIYELRQAKEA 123 (308)
Q Consensus 93 i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~ 123 (308)
+..|++|++.|+..++.|=.-+..+.+..+.
T Consensus 3 ~~~L~~El~~L~~~E~~LD~li~~~~~~L~~ 33 (101)
T d2azeb1 3 LEGLTQDLRQLQESEQQLDHLMNICTTQLRL 33 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777665555555544444
No 3
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.46 E-value=1e+02 Score=21.92 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=31.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021713 90 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 126 (308)
Q Consensus 90 ~~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~~~ 126 (308)
.+|+..|++|-+.|..+.+.+-.+|.++....+..++
T Consensus 7 ~~El~~L~~~E~~LD~li~~~~~~L~~lted~~n~k~ 43 (101)
T d2azeb1 7 TQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRL 43 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccC
Confidence 4689999999999999999999999998866655554
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=15.65 E-value=1.7e+02 Score=20.21 Aligned_cols=31 Identities=6% Similarity=0.273 Sum_probs=18.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 91 QDIKIMEAEVQALEELSKQLFLEIYELRQAK 121 (308)
Q Consensus 91 ~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~ 121 (308)
..+..++.+|+.|+.-...+-.++.+++...
T Consensus 72 ~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 72 EKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666655444
No 5
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=14.84 E-value=75 Score=23.22 Aligned_cols=15 Identities=27% Similarity=0.239 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 021713 103 LEELSKQLFLEIYEL 117 (308)
Q Consensus 103 Le~l~~~L~~el~~l 117 (308)
++++-..+-.++.++
T Consensus 151 ~d~~i~~~~~~i~~l 165 (181)
T d1ydxa2 151 LDQKLDQYKKELSSL 165 (181)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 6
>d3e9va1 d.370.1.1 (A:9-128) NGF-inducible anti-proliferative protein PC3 (BTG2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.54 E-value=34 Score=25.52 Aligned_cols=40 Identities=23% Similarity=0.434 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHhcCCcccchhhhhh
Q 021713 239 GMYFVSSILLIRKSLAIEYRIIITEVLGGEIQFDFYHRWF 278 (308)
Q Consensus 239 G~Y~iSt~lllRsnLP~~~~~~i~~~Lg~~l~f~~~~~wF 278 (308)
++.||+..|-....||.+.-....+-|+..|.=.|=+|||
T Consensus 9 av~Fl~~ll~~~~~l~~~~~~~F~~~L~~~L~~~y~~HWy 48 (120)
T d3e9va1 9 AVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWF 48 (120)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 6788888665566699988766666666445555667776
No 7
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.53 E-value=1.3e+02 Score=19.60 Aligned_cols=33 Identities=24% Similarity=0.161 Sum_probs=24.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 90 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKE 122 (308)
Q Consensus 90 ~~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~ 122 (308)
.+.|..|+.++..++.-..+|..+..+|+.+.+
T Consensus 46 ~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~l~ 78 (79)
T d1nlwa_ 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457888888888888777777777777766543
No 8
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.05 E-value=1.9e+02 Score=19.25 Aligned_cols=33 Identities=24% Similarity=0.095 Sum_probs=22.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021713 90 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKE 122 (308)
Q Consensus 90 ~~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~ 122 (308)
.+.|..|+.++..|+.-..+|-.+...|..+.+
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~ 83 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888877766666666666655543
No 9
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=12.62 E-value=94 Score=22.77 Aligned_cols=21 Identities=5% Similarity=0.128 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021713 93 IKIMEAEVQALEELSKQLFLE 113 (308)
Q Consensus 93 i~~L~~EI~~Le~l~~~L~~e 113 (308)
+..++++++.|+.+.+.|..+
T Consensus 160 i~~~~~~i~~l~~~~~~ll~~ 180 (193)
T d1ydxa1 160 LENLASLIEINRKLRDEYAHK 180 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 10
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=12.37 E-value=2.3e+02 Score=22.36 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=18.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHH
Q 021713 90 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHM 134 (308)
Q Consensus 90 ~~~i~~L~~EI~~Le~l~~~L~~el~~l~~~~~~~~~s~T~~Gr~ 134 (308)
+.+.+.|+.||+.|.+ +..|.....+|-|+.
T Consensus 50 ~~dr~ai~~E~~~l~~--------------ei~~ia~~T~fng~~ 80 (395)
T d1io1a_ 50 QSDLDSIQAEITQRLN--------------EIDRVSGQTQFNGVK 80 (395)
T ss_dssp HHHHHHHHHHHHHHHH--------------HHHHHHHHCCBTTBC
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHhCeeCCcc
Confidence 4566677777665433 445555556666654
Done!