Query 021714
Match_columns 308
No_of_seqs 265 out of 2235
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:06:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02978 pyridoxal kinase 100.0 6.7E-49 1.4E-53 357.2 34.1 306 1-307 1-307 (308)
2 KOG2599 Pyridoxal/pyridoxine/p 100.0 1.9E-49 4.1E-54 337.4 26.5 295 7-307 2-305 (308)
3 COG2240 PdxK Pyridoxal/pyridox 100.0 3.8E-49 8.1E-54 343.6 25.3 275 15-307 1-280 (281)
4 PRK05756 pyridoxamine kinase; 100.0 2.6E-46 5.6E-51 337.8 30.4 274 14-307 1-285 (286)
5 PRK08176 pdxK pyridoxal-pyrido 100.0 9.9E-44 2.1E-48 319.9 29.4 257 13-290 14-279 (281)
6 TIGR00687 pyridox_kin pyridoxa 100.0 2.5E-43 5.4E-48 318.4 30.1 273 14-307 1-286 (286)
7 PTZ00344 pyridoxal kinase; Pro 100.0 7.9E-43 1.7E-47 316.3 31.5 289 11-307 1-296 (296)
8 COG0351 ThiD Hydroxymethylpyri 100.0 2.8E-42 6.1E-47 299.2 27.1 250 13-277 2-255 (263)
9 PRK07105 pyridoxamine kinase; 100.0 1E-38 2.3E-43 288.0 28.1 248 11-271 1-259 (284)
10 cd01173 pyridoxal_pyridoxamine 100.0 2.1E-38 4.6E-43 281.6 27.7 244 16-269 1-253 (254)
11 PRK12616 pyridoxal kinase; Rev 100.0 2.6E-37 5.6E-42 276.7 27.3 243 13-272 2-254 (270)
12 PF08543 Phos_pyr_kin: Phospho 100.0 1.9E-37 4.2E-42 273.8 24.3 237 24-275 1-242 (246)
13 PRK12412 pyridoxal kinase; Rev 100.0 9.4E-37 2E-41 272.9 28.1 242 14-273 1-252 (268)
14 PTZ00493 phosphomethylpyrimidi 100.0 8.9E-37 1.9E-41 275.2 27.1 256 11-272 1-290 (321)
15 PRK06427 bifunctional hydroxy- 100.0 1.8E-36 4E-41 270.9 27.3 243 11-271 1-252 (266)
16 cd01169 HMPP_kinase 4-amino-5- 100.0 2.1E-36 4.6E-41 266.7 25.6 234 16-267 1-241 (242)
17 TIGR00097 HMP-P_kinase phospho 100.0 3.7E-36 8E-41 267.1 26.3 235 17-270 1-243 (254)
18 PTZ00347 phosphomethylpyrimidi 100.0 5.6E-34 1.2E-38 275.8 26.5 239 13-270 229-481 (504)
19 PLN02898 HMP-P kinase/thiamin- 100.0 2.8E-33 6E-38 270.8 27.1 239 14-271 9-257 (502)
20 KOG2598 Phosphomethylpyrimidin 100.0 1.1E-33 2.4E-38 254.7 20.8 258 2-273 11-289 (523)
21 PRK14713 multifunctional hydro 100.0 3.3E-33 7.3E-38 271.5 24.4 242 10-269 25-274 (530)
22 PRK08573 phosphomethylpyrimidi 100.0 3.3E-32 7.1E-37 259.5 28.2 239 14-271 2-248 (448)
23 PRK12413 phosphomethylpyrimidi 100.0 5.7E-32 1.2E-36 240.2 26.6 237 14-271 3-246 (253)
24 PRK09517 multifunctional thiam 100.0 1.7E-32 3.6E-37 275.7 23.9 243 9-269 236-486 (755)
25 COG1105 FruK Fructose-1-phosph 100.0 4.3E-27 9.3E-32 209.3 20.5 223 16-266 44-285 (310)
26 cd01171 YXKO-related B.subtili 99.9 5.1E-22 1.1E-26 176.4 21.7 227 10-270 4-238 (254)
27 TIGR00196 yjeF_cterm yjeF C-te 99.9 7.4E-20 1.6E-24 164.1 19.8 221 8-261 18-241 (272)
28 TIGR03828 pfkB 1-phosphofructo 99.9 1.5E-19 3.3E-24 164.2 22.0 174 66-266 108-283 (304)
29 cd01174 ribokinase Ribokinase 99.8 2.6E-19 5.6E-24 161.8 21.1 153 87-267 130-283 (292)
30 PRK10294 6-phosphofructokinase 99.8 1.9E-19 4.1E-24 164.4 19.8 175 65-267 111-289 (309)
31 PRK11142 ribokinase; Provision 99.8 2.1E-19 4.6E-24 163.6 19.7 168 66-266 117-285 (306)
32 cd01164 FruK_PfkB_like 1-phosp 99.8 3E-19 6.6E-24 161.3 20.4 174 66-266 109-284 (289)
33 PRK09513 fruK 1-phosphofructok 99.8 3.4E-19 7.3E-24 162.9 20.7 156 86-267 131-288 (312)
34 PTZ00292 ribokinase; Provision 99.8 2.1E-19 4.6E-24 165.2 19.4 175 66-267 131-307 (326)
35 PRK13508 tagatose-6-phosphate 99.8 3.3E-19 7.1E-24 162.8 20.3 179 66-269 107-288 (309)
36 TIGR01231 lacC tagatose-6-phos 99.8 6.1E-19 1.3E-23 161.0 19.9 159 87-269 127-288 (309)
37 TIGR03168 1-PFK hexose kinase, 99.8 9.2E-19 2E-23 159.2 20.3 174 66-266 108-283 (303)
38 cd01166 KdgK 2-keto-3-deoxyglu 99.8 3.8E-19 8.3E-24 160.7 17.0 163 86-267 124-290 (294)
39 cd01172 RfaE_like RfaE encodes 99.8 1.1E-18 2.3E-23 158.7 18.3 155 86-267 134-291 (304)
40 PLN02341 pfkB-type carbohydrat 99.8 9.9E-19 2.1E-23 168.0 16.3 161 86-266 224-389 (470)
41 TIGR02198 rfaE_dom_I rfaE bifu 99.8 4.8E-18 1E-22 155.3 19.0 153 86-266 143-298 (315)
42 TIGR02152 D_ribokin_bact ribok 99.8 3.5E-18 7.7E-23 154.6 17.9 169 66-266 109-278 (293)
43 PTZ00247 adenosine kinase; Pro 99.8 2.4E-18 5.3E-23 159.4 16.7 161 87-267 160-331 (345)
44 PLN02323 probable fructokinase 99.8 1.3E-17 2.9E-22 153.5 19.7 161 87-267 137-308 (330)
45 cd01168 adenosine_kinase Adeno 99.8 2.9E-18 6.4E-23 156.6 14.7 158 87-267 146-306 (312)
46 cd01167 bac_FRK Fructokinases 99.8 5.6E-18 1.2E-22 153.3 15.9 160 86-266 120-290 (295)
47 PRK09850 pseudouridine kinase; 99.8 1.7E-17 3.8E-22 151.7 18.8 130 117-266 158-288 (313)
48 cd01170 THZ_kinase 4-methyl-5- 99.8 5.9E-17 1.3E-21 142.7 21.2 162 87-270 50-225 (242)
49 PRK09434 aminoimidazole ribosi 99.8 1.4E-17 3.1E-22 151.5 16.9 160 87-267 120-290 (304)
50 PRK09954 putative kinase; Prov 99.8 3.5E-17 7.5E-22 152.7 19.3 129 117-265 211-340 (362)
51 TIGR00694 thiM hydroxyethylthi 99.8 3.8E-17 8.3E-22 144.5 18.2 162 87-271 52-225 (249)
52 cd01941 YeiC_kinase_like YeiC- 99.8 7.5E-17 1.6E-21 145.4 19.8 156 87-266 129-287 (288)
53 PLN02967 kinase 99.8 3.4E-17 7.4E-22 158.5 18.4 167 87-266 336-527 (581)
54 cd00287 ribokinase_pfkB_like r 99.7 2.1E-16 4.5E-21 134.2 19.3 137 88-244 59-196 (196)
55 cd01944 YegV_kinase_like YegV- 99.7 1.3E-16 2.9E-21 144.0 17.5 159 86-267 125-287 (289)
56 PLN02548 adenosine kinase 99.7 9.3E-17 2E-21 148.0 16.4 161 87-267 149-320 (332)
57 PLN02813 pfkB-type carbohydrat 99.7 8.8E-17 1.9E-21 152.5 16.5 160 87-267 225-388 (426)
58 PLN02543 pfkB-type carbohydrat 99.7 2.8E-16 6.1E-21 150.5 18.5 166 87-266 267-469 (496)
59 PF00294 PfkB: pfkB family car 99.7 1.5E-16 3.3E-21 144.1 15.3 159 87-266 128-290 (301)
60 PRK11316 bifunctional heptose 99.7 5.2E-16 1.1E-20 149.8 19.7 153 86-267 143-297 (473)
61 cd01946 ribokinase_group_C Rib 99.7 3E-16 6.4E-21 141.0 16.3 151 86-266 114-271 (277)
62 PLN02379 pfkB-type carbohydrat 99.7 4E-16 8.6E-21 145.6 16.7 159 86-268 177-339 (367)
63 cd01940 Fructoselysine_kinase_ 99.7 5.3E-16 1.2E-20 138.2 16.3 146 86-266 112-259 (264)
64 cd01943 MAK32 MAK32 kinase. M 99.7 8.3E-16 1.8E-20 141.5 17.4 165 87-267 121-301 (328)
65 PRK09355 hydroxyethylthiazole 99.7 5.6E-15 1.2E-19 131.7 21.0 164 88-271 58-230 (263)
66 COG0524 RbsK Sugar kinases, ri 99.7 4.9E-16 1.1E-20 141.9 14.4 142 102-266 145-289 (311)
67 cd01945 ribokinase_group_B Rib 99.7 8.9E-16 1.9E-20 138.2 15.6 149 86-267 126-275 (284)
68 cd01937 ribokinase_group_D Rib 99.7 1.1E-15 2.4E-20 135.4 12.7 146 86-265 107-253 (254)
69 PRK15074 inosine/guanosine kin 99.6 3.4E-15 7.4E-20 141.3 15.6 165 87-268 187-412 (434)
70 cd01942 ribokinase_group_A Rib 99.6 3.3E-15 7E-20 134.1 14.5 144 87-267 127-275 (279)
71 cd01947 Guanosine_kinase_like 99.6 4.5E-15 9.7E-20 132.4 14.7 125 106-266 135-260 (265)
72 COG2870 RfaE ADP-heptose synth 99.6 2.6E-14 5.7E-19 129.3 15.0 163 71-265 129-294 (467)
73 PRK09813 fructoselysine 6-kina 99.6 4E-14 8.7E-19 126.0 14.8 142 87-267 114-256 (260)
74 cd01939 Ketohexokinase Ketohex 99.5 1.6E-13 3.5E-18 124.1 15.1 151 86-267 127-286 (290)
75 PRK10565 putative carbohydrate 99.5 1.7E-12 3.7E-17 125.6 22.4 221 8-266 248-474 (508)
76 PLN02630 pfkB-type carbohydrat 99.5 2.2E-13 4.8E-18 125.4 13.8 135 101-267 134-274 (335)
77 PF01256 Carb_kinase: Carbohyd 99.5 5.3E-13 1.2E-17 117.2 12.3 212 17-265 1-219 (242)
78 KOG2855 Ribokinase [Carbohydra 99.4 3.6E-12 7.8E-17 114.2 13.4 158 87-266 140-306 (330)
79 KOG2854 Possible pfkB family c 99.3 2.2E-11 4.7E-16 108.2 11.7 147 102-268 175-332 (343)
80 COG0063 Predicted sugar kinase 99.3 7E-10 1.5E-14 99.1 19.1 221 7-266 25-258 (284)
81 PF02110 HK: Hydroxyethylthiaz 99.1 3.8E-09 8.1E-14 92.3 15.4 162 87-270 50-224 (246)
82 COG2145 ThiM Hydroxyethylthiaz 99.0 2.8E-08 6.1E-13 86.1 18.4 161 89-271 60-232 (265)
83 KOG3974 Predicted sugar kinase 98.9 1.3E-07 2.7E-12 81.6 16.6 216 2-244 18-241 (306)
84 KOG2947 Carbohydrate kinase [C 98.4 8.5E-06 1.8E-10 69.9 12.8 106 145-265 181-293 (308)
85 KOG3009 Predicted carbohydrate 98.1 3.4E-05 7.3E-10 71.8 11.8 207 25-266 375-599 (614)
86 PRK14039 ADP-dependent glucoki 94.8 0.5 1.1E-05 45.2 12.1 113 70-192 198-330 (453)
87 PRK03979 ADP-specific phosphof 92.4 2.9 6.3E-05 40.2 12.7 112 70-191 210-344 (463)
88 PRK14038 ADP-dependent glucoki 91.2 4 8.6E-05 39.2 12.0 110 71-191 213-340 (453)
89 TIGR02045 P_fruct_ADP ADP-spec 89.3 8.3 0.00018 37.0 12.4 110 71-191 198-330 (446)
90 COG0541 Ffh Signal recognition 87.4 13 0.00028 35.5 12.3 148 12-193 97-248 (451)
91 PF04587 ADP_PFK_GK: ADP-speci 80.7 8.2 0.00018 37.2 8.2 85 70-165 197-292 (444)
92 PRK10076 pyruvate formate lyas 75.7 51 0.0011 28.3 12.9 74 100-188 52-130 (213)
93 PF03668 ATP_bind_2: P-loop AT 73.9 44 0.00095 30.1 10.2 26 16-44 2-27 (284)
94 cd02067 B12-binding B12 bindin 65.1 32 0.00069 26.2 6.7 63 37-121 22-85 (119)
95 PF02310 B12-binding: B12 bind 63.4 62 0.0013 24.4 9.2 35 87-122 52-86 (121)
96 COG0552 FtsY Signal recognitio 62.8 1E+02 0.0022 28.5 10.3 154 12-193 136-293 (340)
97 cd02070 corrinoid_protein_B12- 62.4 64 0.0014 27.3 8.7 93 37-164 105-199 (201)
98 cd02069 methionine_synthase_B1 60.8 70 0.0015 27.5 8.7 99 37-164 111-209 (213)
99 PRK10867 signal recognition pa 60.2 1.5E+02 0.0031 28.6 11.5 151 12-194 97-250 (433)
100 TIGR02026 BchE magnesium-proto 58.1 1.3E+02 0.0027 29.5 11.0 96 37-161 31-127 (497)
101 KOG4184 Predicted sugar kinase 56.8 33 0.00072 31.8 6.1 85 72-165 227-317 (478)
102 COG1660 Predicted P-loop-conta 56.5 1.2E+02 0.0027 27.1 9.3 77 16-114 2-79 (286)
103 PRK08508 biotin synthase; Prov 56.4 1.5E+02 0.0032 26.5 12.3 110 67-186 40-151 (279)
104 TIGR02370 pyl_corrinoid methyl 55.6 98 0.0021 26.1 8.6 64 29-114 99-162 (197)
105 cd02071 MM_CoA_mut_B12_BD meth 54.4 77 0.0017 24.3 7.2 57 37-115 22-78 (122)
106 PRK02261 methylaspartate mutas 53.9 1.1E+02 0.0024 24.2 8.1 56 37-114 26-81 (137)
107 TIGR01358 DAHP_synth_II 3-deox 48.3 55 0.0012 31.3 6.3 63 64-127 287-349 (443)
108 PF14606 Lipase_GDSL_3: GDSL-l 45.9 1.4E+02 0.0031 24.9 7.8 95 15-127 2-104 (178)
109 PLN02291 phospho-2-dehydro-3-d 45.6 61 0.0013 31.2 6.2 63 64-127 307-369 (474)
110 PRK11145 pflA pyruvate formate 42.5 2.2E+02 0.0049 24.5 10.6 154 13-187 3-163 (246)
111 PF09673 TrbC_Ftype: Type-F co 42.3 1.1E+02 0.0025 23.2 6.3 59 65-127 6-64 (113)
112 COG1058 CinA Predicted nucleot 39.7 1.4E+02 0.003 26.6 7.2 86 17-125 6-95 (255)
113 cd01938 ADPGK_ADPPFK ADP-depen 38.6 2E+02 0.0044 27.8 8.7 72 87-164 206-285 (445)
114 KOG1615 Phosphoserine phosphat 37.6 25 0.00054 29.9 2.1 47 148-194 66-113 (227)
115 PF01474 DAHP_synth_2: Class-I 37.2 91 0.002 29.8 5.9 63 64-127 290-352 (439)
116 PRK05301 pyrroloquinoline quin 36.6 3.5E+02 0.0076 25.1 12.9 113 65-189 44-158 (378)
117 smart00642 Aamy Alpha-amylase 36.3 1.2E+02 0.0027 24.8 6.1 26 101-128 69-94 (166)
118 cd04725 OMP_decarboxylase_like 36.1 2.8E+02 0.006 23.7 8.8 37 87-128 24-60 (216)
119 TIGR03278 methan_mark_10 putat 34.6 4.1E+02 0.009 25.3 12.6 75 101-183 88-165 (404)
120 COG1830 FbaB DhnA-type fructos 33.9 2.3E+02 0.005 25.3 7.6 68 90-159 118-189 (265)
121 TIGR03586 PseI pseudaminic aci 32.8 2.7E+02 0.0058 25.7 8.2 79 102-192 77-167 (327)
122 COG1099 Predicted metal-depend 32.1 3.5E+02 0.0076 23.7 11.3 122 66-193 76-210 (254)
123 KOG0174 20S proteasome, regula 32.0 27 0.00059 29.4 1.5 39 227-266 145-184 (224)
124 PLN02891 IMP cyclohydrolase 31.4 3.6E+02 0.0077 26.8 9.0 52 74-125 102-168 (547)
125 TIGR03849 arch_ComA phosphosul 30.3 3.8E+02 0.0082 23.5 8.8 25 170-194 132-156 (237)
126 PRK13305 sgbH 3-keto-L-gulonat 28.3 1.6E+02 0.0034 25.5 5.6 51 71-128 17-67 (218)
127 PF03102 NeuB: NeuB family; I 28.0 3.2E+02 0.0069 24.0 7.6 79 102-191 56-145 (241)
128 PF11965 DUF3479: Domain of un 28.0 2.5E+02 0.0054 23.1 6.5 41 69-114 45-85 (164)
129 TIGR02109 PQQ_syn_pqqE coenzym 27.7 4.8E+02 0.01 23.9 11.7 113 65-189 35-149 (358)
130 PF13986 DUF4224: Domain of un 27.3 1.4E+02 0.0029 19.0 3.8 31 155-190 3-33 (47)
131 PF00215 OMPdecase: Orotidine 27.1 1.5E+02 0.0034 25.3 5.5 54 69-128 12-66 (226)
132 PRK15447 putative protease; Pr 26.9 4.8E+02 0.01 23.6 10.2 115 66-192 11-138 (301)
133 cd01994 Alpha_ANH_like_IV This 26.5 3.9E+02 0.0084 22.4 11.9 74 97-193 70-145 (194)
134 KOG0256 1-aminocyclopropane-1- 26.5 2.7E+02 0.0059 26.6 7.1 61 64-127 205-269 (471)
135 PF11469 Ribonucleas_3_2: Ribo 26.2 76 0.0017 23.9 2.8 32 226-257 53-84 (120)
136 cd02068 radical_SAM_B12_BD B12 26.1 2.6E+02 0.0057 21.3 6.2 61 86-159 39-100 (127)
137 TIGR00444 mazG MazG family pro 26.0 1.8E+02 0.0039 25.7 5.7 47 230-277 184-230 (248)
138 TIGR02495 NrdG2 anaerobic ribo 25.6 3.7E+02 0.0081 21.9 11.7 76 104-190 79-158 (191)
139 PF06838 Met_gamma_lyase: Meth 25.5 1.7E+02 0.0037 27.6 5.5 53 71-127 143-200 (403)
140 cd04890 ACT_AK-like_1 ACT doma 25.1 1E+02 0.0023 20.0 3.2 34 17-50 2-36 (62)
141 TIGR02491 NrdG anaerobic ribon 25.0 2E+02 0.0043 23.1 5.5 57 64-124 43-102 (154)
142 COG4381 Mu-like prophage prote 23.9 80 0.0017 24.6 2.6 55 232-287 50-113 (135)
143 PF02571 CbiJ: Precorrin-6x re 23.4 1.4E+02 0.0031 26.3 4.6 91 89-195 46-139 (249)
144 PRK06256 biotin synthase; Vali 23.2 5.7E+02 0.012 23.2 11.3 109 66-187 90-202 (336)
145 PF02679 ComA: (2R)-phospho-3- 23.1 1.6E+02 0.0034 26.0 4.7 52 64-121 19-71 (244)
146 TIGR00334 5S_RNA_mat_M5 ribonu 23.1 4.4E+02 0.0096 21.9 8.0 82 87-181 23-108 (174)
147 PRK04165 acetyl-CoA decarbonyl 22.6 7.2E+02 0.016 24.1 12.7 118 65-194 100-234 (450)
148 COG0269 SgbH 3-hexulose-6-phos 22.2 4.3E+02 0.0092 22.9 7.0 91 87-195 81-173 (217)
149 TIGR02045 P_fruct_ADP ADP-spec 22.0 42 0.00092 32.3 1.0 20 225-244 421-441 (446)
150 PF10686 DUF2493: Protein of u 21.9 1.9E+02 0.004 20.1 4.0 33 166-198 12-44 (71)
151 TIGR01369 CPSaseII_lrg carbamo 21.5 6.1E+02 0.013 27.5 9.6 77 11-94 3-89 (1050)
152 COG3200 AroG 3-deoxy-D-arabino 21.5 2.9E+02 0.0062 25.9 6.0 61 64-125 291-351 (445)
153 KOG3361 Iron binding protein i 21.4 1.1E+02 0.0024 24.1 3.0 31 227-258 85-116 (157)
154 PF03652 UPF0081: Uncharacteri 21.3 1.6E+02 0.0034 23.3 4.0 49 70-124 41-95 (135)
155 TIGR03569 NeuB_NnaB N-acetylne 21.3 6.5E+02 0.014 23.2 8.6 71 103-187 77-161 (329)
156 COG1509 KamA Lysine 2,3-aminom 21.1 7E+02 0.015 23.4 8.9 113 65-195 139-263 (369)
157 KOG0781 Signal recognition par 21.0 8.1E+02 0.018 24.2 11.4 103 11-127 374-477 (587)
158 PF00128 Alpha-amylase: Alpha 20.7 1.1E+02 0.0024 26.9 3.4 25 101-127 51-75 (316)
159 PRK00125 pyrF orotidine 5'-pho 20.4 4.9E+02 0.011 23.4 7.4 62 87-156 54-122 (278)
160 PRK13562 acetolactate synthase 20.2 3.5E+02 0.0076 19.6 6.8 64 14-81 1-67 (84)
161 COG0106 HisA Phosphoribosylfor 20.1 5.6E+02 0.012 22.6 7.4 27 173-199 148-174 (241)
162 COG1180 PflA Pyruvate-formate 20.0 6.1E+02 0.013 22.4 12.9 86 87-188 84-175 (260)
No 1
>PLN02978 pyridoxal kinase
Probab=100.00 E-value=6.7e-49 Score=357.21 Aligned_cols=306 Identities=82% Similarity=1.272 Sum_probs=267.0
Q ss_pred CCCCccccCCCCCCCeEEEEeccCccCccchhhcHHHHHhcCCcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHH
Q 021714 1 MAPPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLE 80 (308)
Q Consensus 1 ~~~~~~~~~~~~~~~~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~ 80 (308)
|+||+|++..+.++++||+|++|+.+|++|+.++.++|+++|++++++||+++||||||+.+.|.+++.++++.++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~vl~iqs~~~~g~~g~~~a~~pl~~~g~~v~~lpTv~lSnhtgy~~~~~~~~~~~~~~~~l~~~~ 80 (308)
T PLN02978 1 MAPPVLSLALPSSTGRVLSIQSHTVHGYVGNKSAVFPLQLLGFDVDPINSVQFSNHTGYPTFKGQVLDGEQLWALIEGLE 80 (308)
T ss_pred CCcchhccccCCCCCcEEEEeCeeeecCCCceehHhhHHHcCCeeeeeccEeecCCCCCCCceeeeCCHHHHHHHHHHHH
Confidence 78999999999999999999999999999998888889999999999999999999999989999999889999999999
Q ss_pred hCCCcccCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHH
Q 021714 81 ANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEA 160 (308)
Q Consensus 81 ~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~ 160 (308)
..+.+.++++++|++++.++++.+.++++.+++.++++++||||+|+++|++|.+++..+.+++.+++.+|+++||.+|+
T Consensus 81 ~~~~~~~~ai~~G~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~~~~~~~~~~ll~~adiitPN~~Ea 160 (308)
T PLN02978 81 ANGLLFYTHLLTGYIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPPELVPVYREKVVPLATMLTPNQFEA 160 (308)
T ss_pred HcCCcccCEEEecccCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCChhHHHHHHHHHHhhCCeeccCHHHH
Confidence 87765689999999999999999999999998765678899999999989999888888888766999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccCCCCCCccHHHHHHHH
Q 021714 161 EQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTALLL 240 (308)
Q Consensus 161 ~~L~g~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~GaGD~f~a~l~ 240 (308)
+.|+|.++.+.+++.++++++.++|++.|+||+++.+|.++........++..++.+++..|+++..++||||+|+|+++
T Consensus 161 ~~L~g~~~~~~~~~~~a~~~l~~~g~~~VVITs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~GtGD~fsA~la 240 (308)
T PLN02978 161 EQLTGIRIVTEEDAREACAILHAAGPSKVVITSIDIDGKLLLVGSHRKEKGARPEQFKIVIPKIPAYFTGTGDLMAALLL 240 (308)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhCCCEEEEEEecCCCCEEEEEecccccCCCCceEEEEccCCCCCCCCchHHHHHHHH
Confidence 99999887777888899999999999999999976556654332111000000245667778887777999999999999
Q ss_pred HHHccCC-CCHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccccccchhhcCCCcceeEEeC
Q 021714 241 GWSNKYR-DNLDIAAELAVSSLQALLQRTVNDYVTAGFDPQSSSLEIRLIQSQDDIRNPQVKFKSEKY 307 (308)
Q Consensus 241 ~~l~~~g-~~~~~A~~~A~a~~~~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (308)
+.+++ | .++++|+++|.++++.+++.|.+.....+.+...+..||++++.++.+..|...|.++++
T Consensus 241 a~l~~-g~~~l~~A~~~A~~~v~~~i~~t~~~~~~~~~~~~~~~~el~l~~~~~~~~~~~~~~~~~~~ 307 (308)
T PLN02978 241 GWSHK-YPDNLDKAAELAVSSLQAVLRRTLADYKRAGADPKSSSLELRLVQSQDDIRHPQVRFKAERY 307 (308)
T ss_pred HHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHhccccccCCCccchhhhhccChHhHhCCCceEEEEEc
Confidence 99997 7 799999999999999999999986544455666889999999999999999999999875
No 2
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.9e-49 Score=337.40 Aligned_cols=295 Identities=55% Similarity=0.867 Sum_probs=262.3
Q ss_pred ccCCCCCCCeEEEEeccCccCccchhhcHHHHHhcCCcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcc
Q 021714 7 SLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLY 86 (308)
Q Consensus 7 ~~~~~~~~~~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~ 86 (308)
..+.+.+++|||+|++|++.|++||.++.|+|+-+|+++++++++++|||+||..+.|....++++.++++.+..+....
T Consensus 2 ~~~~~~~~kRVLSIQShVvhGYVGNkaAtFPLQllGwdVD~insVqFSNHtGY~~~kG~~~~~~eL~dL~egl~~nn~~~ 81 (308)
T KOG2599|consen 2 AEATMETTKRVLSIQSHVVHGYVGNKAATFPLQLLGWDVDVINSVQFSNHTGYAHVKGQVLNEEELEDLYEGLLLNNLNK 81 (308)
T ss_pred CcccccCCccEEEEeeeeeeeeccccccccchhhhccccccccceeeccccCCccccccccCHHHHHHHHHHHhhccccc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999876556
Q ss_pred cCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCC
Q 021714 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF 166 (308)
Q Consensus 87 ~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~ 166 (308)
++++++||+++......+.++++++|+.+|+..+||||||+|+|++|++++.+..+++.+.+.+|+||||.+|++.|+|.
T Consensus 82 Y~~vLTGY~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~eelipvYr~~i~~ladiiTPNqFE~EiLtg~ 161 (308)
T KOG2599|consen 82 YDAVLTGYLPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEELIPVYRDLIIPLADIITPNQFEAEILTGM 161 (308)
T ss_pred cceeeeeccCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEeccHHHHHHHHHhhcchhhhcCCcchhhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999997777899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeeeec---CC-cEEEEeeeccCCCCCCcEEEEEecccCCCCCCccHHHHHHHHHH
Q 021714 167 RIGSEADGREACKILHAAGPAKVVITSINI---DG-NLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTALLLGW 242 (308)
Q Consensus 167 ~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~---~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~GaGD~f~a~l~~~ 242 (308)
++.+.++..++.+.|+++|++.||||+... .| .+++.+... + .+.+.+..|+++.-++|+||.|+|.+++.
T Consensus 162 ~I~t~eda~~a~~~lhq~~v~~vVITS~~~~~~~g~~l~c~gs~~---~--~~~f~~~ipki~~~FtGTGDLfsaLLla~ 236 (308)
T KOG2599|consen 162 EIRTEEDAKRAVEKLHQKGVKTVVITSFDLGEFTGETLRCIGSSC---G--SERFRYLIPKIDGVFTGTGDLFSALLLAW 236 (308)
T ss_pred eeccHHHHHHHHHHHHHhCCCEEEEEeeeeCCCCCcEEEEEEecc---C--CceEEEEecccceEEecccHHHHHHHHHH
Confidence 999999999999999999999999998743 24 244444321 1 35667777888888999999999999999
Q ss_pred HccCC---CCHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCc--ccccccccchhhcCCCcceeEEeC
Q 021714 243 SNKYR---DNLDIAAELAVSSLQALLQRTVNDYVTAGFDPQSSS--LEIRLIQSQDDIRNPQVKFKSEKY 307 (308)
Q Consensus 243 l~~~g---~~~~~A~~~A~a~~~~~i~~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 307 (308)
+.+ - .++..|++.+.+.++.+++.|.......+..+.... .||++|++|+.+.+|+...+++-|
T Consensus 237 ~~~-~~~~~~l~~a~e~~ls~~~~viqkT~~~~~~~~~~~~~~~~~~ELrLIqSr~~i~~p~~~~~~~~~ 305 (308)
T KOG2599|consen 237 LHE-SPDNDDLSKAVEQVLSSVQAVIQKTLDYAKAQGGEPVKAAMERELRLIQSRDDIEQPSICDQAEVY 305 (308)
T ss_pred Hhc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhcchhhhhCCccccceEEE
Confidence 886 4 689999999999999999999998777765443333 899999999999999988877543
No 3
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=100.00 E-value=3.8e-49 Score=343.57 Aligned_cols=275 Identities=42% Similarity=0.675 Sum_probs=248.9
Q ss_pred CeEEEEeccCccCccchhhcHHHHHhcCCcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCc-ccCEEEEe
Q 021714 15 GRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLL-YYTHLLTG 93 (308)
Q Consensus 15 ~~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~-~~~~v~~G 93 (308)
++||+|++++++|++||.+++++|+.+|++++.+||+++||||||+.+.|...+.+++..+++.|.+.++. .+|+|++|
T Consensus 1 k~vlaIqShVv~G~vGn~AA~f~lq~~G~~V~~vpTV~fSnHtgyg~~~g~v~~~e~l~~~l~~l~~~~~~~~~davltG 80 (281)
T COG2240 1 KRILAIQSHVVYGSVGNSAAIFPLQRLGLDVWAVPTVQFSNHTGYGKWTGIVMPPEQLADLLNGLEAIDKLGECDAVLTG 80 (281)
T ss_pred CcEEEEeeeEeecccccHhHHHHHHHcCCceeeeceEEecCCCCCCCCCCcCCCHHHHHHHHHHHHhcccccccCEEEEc
Confidence 58999999999999999999999999999999999999999999998889999999999999999995433 49999999
Q ss_pred ccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCHHH
Q 021714 94 YIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEAD 173 (308)
Q Consensus 94 ~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~d 173 (308)
|+++..++..+.++++++|+.+|++.++|||||+|.|++|+.++..+.++.+++|.+|++|||.+|++.|+|.++++.++
T Consensus 81 Ylgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fELe~Ltg~~~~~~~d 160 (281)
T COG2240 81 YLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNIFELEILTGKPLNTLDD 160 (281)
T ss_pred cCCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcchhhEeCCCHHHHHHHhCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999779999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCeEEEeeeecC----CcEEEEeeeccCCCCCCcEEEEEecccCCCCCCccHHHHHHHHHHHccCCCC
Q 021714 174 GREACKILHAAGPAKVVITSINID----GNLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTALLLGWSNKYRDN 249 (308)
Q Consensus 174 ~~~~~~~l~~~g~~~Vvit~g~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~GaGD~f~a~l~~~l~~~g~~ 249 (308)
+.++++.|.++|++.|+||+-... +.+++.... . ...+++. |.++..+.|+||.|+|.|++.+++ |.+
T Consensus 161 a~~aa~~L~~~gp~~vlVTS~~~~~~~~~~~~~~~~~---~---~~~~h~~-~~v~~~~~GtGDL~sallla~lL~-g~~ 232 (281)
T COG2240 161 AVKAARKLGADGPKIVLVTSLSRAGMSTGNFEMLGKS---A---ELAWHIS-PLVPFIPNGTGDLFSALLLARLLE-GLS 232 (281)
T ss_pred HHHHHHHHhhcCCCEEEEecccccCCCCceEEEeccc---h---hhhhhhh-hcCCCCCCCchHHHHHHHHHHHHc-CCC
Confidence 999999999999999999976431 334443211 0 2345554 677778999999999999999998 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccccccchhhcCCCcceeEEeC
Q 021714 250 LDIAAELAVSSLQALLQRTVNDYVTAGFDPQSSSLEIRLIQSQDDIRNPQVKFKSEKY 307 (308)
Q Consensus 250 ~~~A~~~A~a~~~~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (308)
+.+|++.+.++++++++.|.+ .+++|+++++++..+.+|...|+++++
T Consensus 233 ~~~al~~~~~~V~evl~~T~~----------~~~~El~lv~~~~~l~~p~~~~~~~~l 280 (281)
T COG2240 233 LTQALERATAAVYEVLQETQK----------LGSDELQLVAAQERLAQPFAIFEAERL 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------cCCcchhhhhhHHHHhCcHHhhhhhcc
Confidence 999999999999999999999 568999999999999999999988775
No 4
>PRK05756 pyridoxamine kinase; Validated
Probab=100.00 E-value=2.6e-46 Score=337.83 Aligned_cols=274 Identities=35% Similarity=0.592 Sum_probs=242.2
Q ss_pred CCeEEEEeccCccCccchhhcHHHHHhcCCcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCc-ccCEEEE
Q 021714 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLL-YYTHLLT 92 (308)
Q Consensus 14 ~~~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~-~~~~v~~ 92 (308)
|++||+|++++++|++|+.+++++|+++|+++++++|+++++|++|..+.|..+++++++.++++|...+.+ .++++++
T Consensus 1 ~~~il~i~~~~~~G~~g~~~~~~~l~~~g~~~~~~~T~~~s~~t~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 80 (286)
T PRK05756 1 MKNILSIQSHVVYGHVGNSAAVFPMQRLGVNVWPLNTVQFSNHTGYGKWTGCVMPPSHLTEIVQGIADIGWLGECDAVLS 80 (286)
T ss_pred CCcEEEEeceeecccccchhHHHHHHHcCCcceeeceEeecCCCCCCCccCeeCCHHHHHHHHHHHHhcCccccCCEEEE
Confidence 679999999999999999999999999999999999999999999887889999989999999999775432 4789999
Q ss_pred eccCCHhHHHHHHHHHHHHHhcCCCceEEEcccccc-CCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCH
Q 021714 93 GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSE 171 (308)
Q Consensus 93 G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~-~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~ 171 (308)
|++++..+.+.+.++++++++..+.+.+++||++++ .+..|.+++..+.+++.+++++|++|||.+|++.|+|.++.+.
T Consensus 81 G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~adiitpN~~Ea~~L~g~~~~~~ 160 (286)
T PRK05756 81 GYLGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNLFELEWLSGRPVETL 160 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccccEecCCHHHHHHHhCCCcCCH
Confidence 999999999999999999987655577999999998 4457888888888887799999999999999999999888788
Q ss_pred HHHHHHHHHHHHcCCCeEEEeeeecC-------CcEEEEeeeccCCCCCCcEEEEEecccCC--CCCCccHHHHHHHHHH
Q 021714 172 ADGREACKILHAAGPAKVVITSINID-------GNLFLIGSHQKEKGQSPEQFKIVIPKIPA--YFTGTGDLMTALLLGW 242 (308)
Q Consensus 172 ~d~~~~~~~l~~~g~~~Vvit~g~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~t~GaGD~f~a~l~~~ 242 (308)
+++.+++++|+++|++.|+||+|+.. |.+++.. ++.++++.++++. +++||||+|+|+|+++
T Consensus 161 ~~~~~~~~~l~~~g~~~Vvvt~g~~~~~~~~~~g~~~~~~---------~~~~~~~~~~~~~~v~~~GaGD~f~a~~~a~ 231 (286)
T PRK05756 161 EDAVAAARALIARGPKIVLVTSLARAGYPADRFEMLLVTA---------DGAWHISRPLVDFMRQPVGVGDLTSALFLAR 231 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEeccccCCCCCCcEEEEEEEC---------CceEEEecCccCCCCCCCChHHHHHHHHHHH
Confidence 88999999999999999999998521 2333322 3456666667665 9999999999999999
Q ss_pred HccCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccccccchhhcCCCcceeEEeC
Q 021714 243 SNKYRDNLDIAAELAVSSLQALLQRTVNDYVTAGFDPQSSSLEIRLIQSQDDIRNPQVKFKSEKY 307 (308)
Q Consensus 243 l~~~g~~~~~A~~~A~a~~~~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (308)
|++ |.++++|+++|+++++.+++.+.+ .++.||+++++|+.+.+|..+|+++++
T Consensus 232 l~~-g~~~~~al~~A~~~~~~~i~~~~~----------~~~~el~~~~~~~~~~~~~~~~~~~~~ 285 (286)
T PRK05756 232 LLQ-GGSLEEALEHTTAAVYEVMARTKE----------RGSYELQLVAAQDSIATPRAMFQARRL 285 (286)
T ss_pred Hhc-CCCHHHHHHHHHHHHHHHHHHHHH----------cCCCccceecChHHHhCCCcceeeEEC
Confidence 998 999999999999999999999988 348999999999999999999999875
No 5
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=100.00 E-value=9.9e-44 Score=319.85 Aligned_cols=257 Identities=31% Similarity=0.409 Sum_probs=224.7
Q ss_pred CCCeEEEEeccCccCccchhhcHHHHHhcCCcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCc-ccCEEE
Q 021714 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLL-YYTHLL 91 (308)
Q Consensus 13 ~~~~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~-~~~~v~ 91 (308)
.|.+||+|++++++|++|+.+++++|+++|++++.+||+++++|++|..+.+.+++.+.+.++++.|.+...+ ++|+|+
T Consensus 14 ~~~~vl~i~~~~~~G~v~~~~a~~~l~~~G~~v~~lpTv~~s~~~~y~~~~~~~~~~~~i~~~l~~~~~~~~l~~~d~i~ 93 (281)
T PRK08176 14 LQADIVAVQSQVVYGSVGNSIAVPAIKANGLRVFAVPTVLLSNTPHYPTFYGGAIPDEWFSGYLRALQERDALRQLRAVT 93 (281)
T ss_pred ccceEEEEeceeeecccccHHHHHHHHHcCCcccccceEeecCCCCCCCcCCeeCCHHHHHHHHHHHHhcCccccCCEEE
Confidence 4678999999999999999999999999999999999999999999988778888889999999999887532 589999
Q ss_pred EeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCC-cCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCCCCCC
Q 021714 92 TGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGK-LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGS 170 (308)
Q Consensus 92 ~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~-~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~ 170 (308)
+||+++.+..+.+.+++++++..+++.++|+||+|++.++ +|.+++..+.+++.+++++|++|||.+|++.|+|.++.+
T Consensus 94 ~G~l~s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L~g~~~~~ 173 (281)
T PRK08176 94 TGYMGSASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLPLAQGLTPNIFELEILTGKPCRT 173 (281)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHhhcCEeCCCHHHHHHHhCCCCCC
Confidence 9999999999999999999886556788999999998654 788888888888669999999999999999999988878
Q ss_pred HHHHHHHHHHHHHcCCCeEEEeeeecCC-------cEEEEeeeccCCCCCCcEEEEEecccCCCCCCccHHHHHHHHHHH
Q 021714 171 EADGREACKILHAAGPAKVVITSINIDG-------NLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTALLLGWS 243 (308)
Q Consensus 171 ~~d~~~~~~~l~~~g~~~Vvit~g~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~GaGD~f~a~l~~~l 243 (308)
.+++.+++++|+++|++.|+||+|+ .| .+++.. ++.+....++...+++||||+|+|+|++++
T Consensus 174 ~~~~~~~~~~l~~~g~~~VvIT~g~-~g~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~GaGD~faa~~~a~l 243 (281)
T PRK08176 174 LDSAIAAAKSLLSDTLKWVVITSAA-GNEENQEMQVVVVTA---------DSVNVISHPRVDTDLKGTGDLFCAELVSGL 243 (281)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeecc-CCCCCCcEEEEEEeC---------CceEEEecCccCCCCCChhHHHHHHHHHHH
Confidence 8889999999999999999999986 44 233322 333445556666799999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccccc
Q 021714 244 NKYRDNLDIAAELAVSSLQALLQRTVNDYVTAGFDPQSSSLEIRLIQ 290 (308)
Q Consensus 244 ~~~g~~~~~A~~~A~a~~~~~i~~t~~~~~~~~~~~~~~~~~~~~~~ 290 (308)
++ |.++++|+++|..+++.+++.+.+ .+..||++++
T Consensus 244 ~~-g~~l~~Av~~A~~~v~~~i~~t~~----------~~~~~~~~~~ 279 (281)
T PRK08176 244 LK-GKALTDAAHRAGLRVLEVMRYTQQ----------AGSDELILPP 279 (281)
T ss_pred hc-CCCHHHHHHHHHHHHHHHHHHHHH----------cCCccccccC
Confidence 98 999999999999999999999988 4588888775
No 6
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=100.00 E-value=2.5e-43 Score=318.43 Aligned_cols=273 Identities=43% Similarity=0.669 Sum_probs=237.0
Q ss_pred CCeEEEEeccCccCccchhhcHHHHHhcCCcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCc-ccCEEEE
Q 021714 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLL-YYTHLLT 92 (308)
Q Consensus 14 ~~~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~-~~~~v~~ 92 (308)
|++||+|++++++|++|+.+++++|+++|++++++||+++++|++|..+.|..++.++++.+++.|++...+ .+|++++
T Consensus 1 ~~~vl~i~~~~~~g~~~~~~~~~~l~~~g~~~~~~pT~~~s~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~ 80 (286)
T TIGR00687 1 MKNVLSIQSHVVYGHVGNRAATFPLQRLGFEVWAVNTVQFSNHTGYGKWTGQVLPPDELTELVDGLAAINKLNQCDAVLS 80 (286)
T ss_pred CCeEEEEcCceecccccCchHHHHHHHcCCcceeeCcEEcCCCCCCCCCcCeECCHHHHHHHHHHHHhcCccccCCEEEE
Confidence 579999999999999999999999999999999999999999999998889999999999999999765322 4889999
Q ss_pred eccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCC-cCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCH
Q 021714 93 GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGK-LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSE 171 (308)
Q Consensus 93 G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~-~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~ 171 (308)
||+++..+.+.+.++++.+++.++++.+++||++++.+. .|.+++..+.+++.+++++|+++||.+|++.|+|.++.+.
T Consensus 81 G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~~~~~~~~~~ll~~adii~pN~~Ea~~L~g~~~~~~ 160 (286)
T TIGR00687 81 GYLGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAPDLLEVYREKAIPVADIITPNQFELELLTGRKINTV 160 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeChhHHHHHHHhccccccEecCCHHHHHHHhCCCcCCH
Confidence 999999999999999999998755678999999997643 5667788888877799999999999999999999888788
Q ss_pred HHHHHHHHHHHHcCCCeEEEe-eeecCCc--------EEEEeeeccCCCCCCcEEEEEecccC--CCCCCccHHHHHHHH
Q 021714 172 ADGREACKILHAAGPAKVVIT-SINIDGN--------LFLIGSHQKEKGQSPEQFKIVIPKIP--AYFTGTGDLMTALLL 240 (308)
Q Consensus 172 ~d~~~~~~~l~~~g~~~Vvit-~g~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~t~GaGD~f~a~l~ 240 (308)
+++.++++.|+++|++.|+|| .|. +|. ++... ++.++++.+..+ .+++||||+|+|+|+
T Consensus 161 ~~~~~~~~~l~~~g~~~Viit~~g~-~g~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~d~~GaGD~f~A~~l 230 (286)
T TIGR00687 161 EEALAAADALIAMGPDIVLVTHLAR-AGSQRDRDFEGLVVTQ---------EGRWHISRPLAVFMRQPVGTGDLIAALLL 230 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeccc-cCCCCCcceeEEEEcC---------CceEEEeccCcCCCCCCCChHHHHHHHHH
Confidence 889999999999999999999 453 453 22211 334555555554 489999999999999
Q ss_pred HHHccCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccccccchhhcCCCcceeEEeC
Q 021714 241 GWSNKYRDNLDIAAELAVSSLQALLQRTVNDYVTAGFDPQSSSLEIRLIQSQDDIRNPQVKFKSEKY 307 (308)
Q Consensus 241 ~~l~~~g~~~~~A~~~A~a~~~~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (308)
+++++ |.++++|+++|+++++.+++++.+ .+..|++.++.|+.+..|+.+|++++.
T Consensus 231 ~~l~~-g~~~~~al~~A~~~v~~~l~~t~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (286)
T TIGR00687 231 ATLLH-GNSLKEALEKTVSAVYHVLVTTIA----------LGKYELQPVAAQLEIRMPQSKFDAEKV 286 (286)
T ss_pred HHHhc-CCCHHHHHHHHHHHHHHHHHHHHH----------cCCcchhhhhChHHHhCCcccceeeeC
Confidence 99998 999999999999999999999988 346779999999999999999999763
No 7
>PTZ00344 pyridoxal kinase; Provisional
Probab=100.00 E-value=7.9e-43 Score=316.32 Aligned_cols=289 Identities=45% Similarity=0.729 Sum_probs=241.7
Q ss_pred CCCCCeEEEEeccCccCccchhhcHHHHHhcCCcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCC-cccCE
Q 021714 11 PSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNL-LYYTH 89 (308)
Q Consensus 11 ~~~~~~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~-~~~~~ 89 (308)
++.|++||+|++++++|++|+.++.+.++.+|+++++++|+++++|++|..+.|+.+++++++.+++.|.++.. ..+++
T Consensus 1 ~~~~~~vl~i~~~~~~G~~G~~~~~~~l~~~g~~~~~~~tv~ls~~~~~~~~~g~~i~~~~~~~~l~~l~~~~~~~~~~~ 80 (296)
T PTZ00344 1 MSMEKKVLSIQSHVTHGYVGNRAATFPLQLLGFDVDFVNTVQLSNHTGYPVIKGHRLDLNELITLMDGLRANNLLSDYTY 80 (296)
T ss_pred CCCCCeEEEEcceeecccccchhHHHHHHHcCCcceeeccEecCCCCCCCCccCeeCCHHHHHHHHHHHHhcCCcccCCE
Confidence 46789999999999999999999998899999999999999999999987778899999999999999987532 24789
Q ss_pred EEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCCCCC
Q 021714 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIG 169 (308)
Q Consensus 90 v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~ 169 (308)
|++||+++.+..+.+.++++.++++.+++++|||||++++|++|..++..+.+++ +++++|+++||.+|++.|+|.++.
T Consensus 81 v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~-ll~~~dii~pN~~E~~~L~g~~~~ 159 (296)
T PTZ00344 81 VLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAYRE-LIPYADVITPNQFEASLLSGVEVK 159 (296)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHHHH-HhhhCCEEeCCHHHHHHHhCCCCC
Confidence 9999999999999999999988876445689999999998988888888888884 999999999999999999998877
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEeeeec--CC----cEEEEeeeccCCCCCCcEEEEEecccCCCCCCccHHHHHHHHHHH
Q 021714 170 SEADGREACKILHAAGPAKVVITSINI--DG----NLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTALLLGWS 243 (308)
Q Consensus 170 ~~~d~~~~~~~l~~~g~~~Vvit~g~~--~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~GaGD~f~a~l~~~l 243 (308)
+.+++.++++.+.++|++.|+||+++. +| .++.....+ +..++.+.+..|+++.+++||||+|+|+|++.+
T Consensus 160 ~~~~~~~~~~~l~~~g~~~VvVTg~~~~~~g~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~GaGD~f~A~~~a~l 236 (296)
T PTZ00344 160 DLSDALEAIDWFHEQGIPVVVITSFREDEDPTHLRFLLSCRDKD---TKNNKRFTGKVPYIEGRYTGTGDLFAALLLAFS 236 (296)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeecCCCCCCcEEEEEEecccc---CCCceeEEEeccccCCCCCCchHHHHHHHHHHH
Confidence 778888999999988999999997642 23 222221100 000234556677777788999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccccccchhhcCCCcceeEEeC
Q 021714 244 NKYRDNLDIAAELAVSSLQALLQRTVNDYVTAGFDPQSSSLEIRLIQSQDDIRNPQVKFKSEKY 307 (308)
Q Consensus 244 ~~~g~~~~~A~~~A~a~~~~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (308)
.+ | ++++|+++|.++++.+++.+.+.. +.|+.+. ...||+++++|+.+++|..+|++++.
T Consensus 237 ~~-g-~~~~a~~~A~a~~~~~i~~~~~~~-~~~~~~~-~~~el~~~~~~~~~~~~~~~~~~~~~ 296 (296)
T PTZ00344 237 HQ-H-PMDLAVGKAMGVLQDIIKATRESG-GSGSSSL-MSRELRLIQSPRDLLNPETVFKVTPL 296 (296)
T ss_pred hc-C-CHHHHHHHHHHHHHHHHHHHHHhC-cCCCCCC-CCceeeeccChHHHhCCCcceEEEEC
Confidence 97 7 999999999999999999998832 2233322 37999999999999999999998763
No 8
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=100.00 E-value=2.8e-42 Score=299.23 Aligned_cols=250 Identities=25% Similarity=0.324 Sum_probs=212.4
Q ss_pred CCCeEEEEeccCccCccchhhcHHHHHhcC-CcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCEEE
Q 021714 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLG-YDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLL 91 (308)
Q Consensus 13 ~~~~Vl~i~~~~~~G~~G~~a~~~~l~~~G-i~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~v~ 91 (308)
.++++|+|.|+|++||+|+++|+++++++| +.++.+++++.||+.+... ..+++++.++++++.+.+.- .++++|
T Consensus 2 ~~~~~LtIAGsD~sGGAGIqADLKTf~a~gvyg~saITaltaQNt~gV~~--v~~v~~~~v~~Ql~av~~D~--~v~avK 77 (263)
T COG0351 2 KLPVVLTIAGSDSSGGAGIQADLKTFQALGVYGMSAITALTAQNTLGVHG--VHPVPPEFVEAQLDAVFSDI--PVDAVK 77 (263)
T ss_pred CCceEEEEeccCCCccHHHHHHHHHHHhcCCccceEEEEEEEeecCceee--EEeCCHHHHHHHHHHHhhcC--CCCEEE
Confidence 467899999999999999999999999999 7788888888889887554 47899999999988876653 489999
Q ss_pred EeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccc-cCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCC-CCC
Q 021714 92 TGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG-DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF-RIG 169 (308)
Q Consensus 92 ~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~-~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~-~~~ 169 (308)
+|||++.+.++.+.+.++++.- .++|+||||. .+|..+.+++..+.++++|+|+++++|||..|++.|+|. ++.
T Consensus 78 tGML~~~eiie~va~~l~~~~~----~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~L~g~~~i~ 153 (263)
T COG0351 78 TGMLGSAEIIEVVAEKLKKYGI----GPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEALSGLPKIK 153 (263)
T ss_pred ECCcCCHHHHHHHHHHHHhcCC----CcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHHHcCCCccC
Confidence 9999999988888887776531 4699999998 477788899999999988999999999999999999994 889
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccCC-CCCCccHHHHHHHHHHHccCCC
Q 021714 170 SEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIPA-YFTGTGDLMTALLLGWSNKYRD 248 (308)
Q Consensus 170 ~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~t~GaGD~f~a~l~~~l~~~g~ 248 (308)
+.+|+.++++.+.++|+++|+||+|+..+ ...+..+. + +..+.+..|+++. ++||+||+|++++++.|++ |.
T Consensus 154 ~~~d~~~a~~~i~~~g~~~VliKGGH~~~-~~~D~l~~---~--~~~~~f~~~ri~t~~tHGTGCTlSaAIaa~LA~-G~ 226 (263)
T COG0351 154 TEEDMKEAAKLLHELGAKAVLIKGGHLEG-EAVDVLYD---G--GSFYTFEAPRIPTKNTHGTGCTLSAAIAANLAK-GL 226 (263)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCCCCCC-CceeEEEc---C--CceEEEeccccCCCCCCCccHHHHHHHHHHHHc-CC
Confidence 99999999888889999999999998655 11111111 1 3467788899986 7899999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 021714 249 NLDIAAELAVSSLQALLQRTVNDYVTAGF 277 (308)
Q Consensus 249 ~~~~A~~~A~a~~~~~i~~t~~~~~~~~~ 277 (308)
++++|++.|..|+..+|+++.+-+++.|.
T Consensus 227 ~l~~AV~~Ak~fv~~AI~~~~~~G~g~gp 255 (263)
T COG0351 227 SLEEAVKKAKEFVTRAIRDSLAIGHGHGP 255 (263)
T ss_pred CHHHHHHHHHHHHHHHHhhhccCCCcccc
Confidence 99999999999999999977776555553
No 9
>PRK07105 pyridoxamine kinase; Validated
Probab=100.00 E-value=1e-38 Score=287.97 Aligned_cols=248 Identities=27% Similarity=0.404 Sum_probs=210.0
Q ss_pred CCCCCeEEEEeccCccCccchhhcHHHHHhcCCcceeeceEEeccCCC-CCCceeeeCCHHHHHHHHHHHHhCCCcccCE
Q 021714 11 PSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTG-YPTFKGQVLNGQQLCDLIEGLEANNLLYYTH 89 (308)
Q Consensus 11 ~~~~~~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~~~~v~t~~~~~~tg-~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~ 89 (308)
+++|++||++++++++|++|+++|+++++++|++++.++|++.++|++ |..+.+.++ .++++.+++.|.+.+. ++++
T Consensus 1 ~~~~~~vl~~~d~~~~G~aG~~adi~~~~~~g~~~~~v~T~~~~q~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~a 78 (284)
T PRK07105 1 KNPVKRVAAIHDLSGFGRVALTASIPIMSSMGLQVCPLPTALLSSHTGGFQNPSIIDL-TDGMQAFLTHWKSLNL-KFDA 78 (284)
T ss_pred CCCCCeEEEEecccccceehHhhHHHHHHHcCCcceeccceEeccCCCCCCCCeEeec-HHHHHHHHHHHHHcCC-ccCE
Confidence 468999999999999999999999999999999999999999988885 776656666 4789999999988765 6899
Q ss_pred EEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcC--CChhhHHHHHHhhcccceEEcCCHHHHHHhhCCC
Q 021714 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLY--VPSELVSVYREKVVPVASMLTPNQFEAEQLTGFR 167 (308)
Q Consensus 90 v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~--~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~ 167 (308)
|++||+++.+..+.+.++++.+++. ++++++||++++++++| .+++..+.+++ +++++|++|||.+|++.|+|.+
T Consensus 79 ik~G~l~~~~~~~~v~~~~~~~~~~--~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~-ll~~advitpN~~Ea~~L~g~~ 155 (284)
T PRK07105 79 IYSGYLGSPRQIQIVSDFIKYFKKK--DLLVVVDPVMGDNGKLYQGFDQEMVEEMRK-LIQKADVITPNLTEACLLLDKP 155 (284)
T ss_pred EEECcCCCHHHHHHHHHHHHHhccC--CCeEEECCccccCCcCCCCCCHHHHHHHHH-HHhhCCEecCCHHHHHHHcCCC
Confidence 9999999999999999999887753 78899999998777766 36777888885 9999999999999999999986
Q ss_pred CC----CHHHHHHHHHHHHHcCCCeEEEeeeec----CCcEEEEeeeccCCCCCCcEEEEEecccCCCCCCccHHHHHHH
Q 021714 168 IG----SEADGREACKILHAAGPAKVVITSINI----DGNLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTALL 239 (308)
Q Consensus 168 ~~----~~~d~~~~~~~l~~~g~~~Vvit~g~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~GaGD~f~a~l 239 (308)
+. +.+++.+++++|.++|++.|+||+++. .|.+++... . +..+.++.++.+.+++||||+|+|+|
T Consensus 156 ~~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~~~~~~g~~g~~~~~~~----~---~~~~~~~~~~~~~~~~GaGD~f~aa~ 228 (284)
T PRK07105 156 YLEKSYSEEEIKQLLRKLADLGPKIVIITSVPFEDGKIGVAYYDRA----T---DRFWKVFCKYIPAHYPGTGDIFTSVI 228 (284)
T ss_pred cCcCCCCHHHHHHHHHHHHhcCCCEEEEcCeeeCCCeEEEEEEeCC----C---CeEEEEeecccCCCcCChhHHHHHHH
Confidence 54 467888999999999999999999542 234443220 0 23455555666679999999999999
Q ss_pred HHHHccCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 021714 240 LGWSNKYRDNLDIAAELAVSSLQALLQRTVND 271 (308)
Q Consensus 240 ~~~l~~~g~~~~~A~~~A~a~~~~~i~~t~~~ 271 (308)
+++|++ |+++++|+++|.++++.+++++...
T Consensus 229 ~~~l~~-g~~l~~av~~A~~~~~~~i~~~~~~ 259 (284)
T PRK07105 229 TGSLLQ-GDSLPIALDRAVQFIEKGIRATLGL 259 (284)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999998 9999999999999999999999874
No 10
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=100.00 E-value=2.1e-38 Score=281.57 Aligned_cols=244 Identities=53% Similarity=0.855 Sum_probs=208.3
Q ss_pred eEEEEeccCccCccchhhcHHHHHhcCCcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCC-CcccCEEEEec
Q 021714 16 RVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANN-LLYYTHLLTGY 94 (308)
Q Consensus 16 ~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~-~~~~~~v~~G~ 94 (308)
+||+|+|+|++|++|+.+|+++++++|+++++++|.+.+.++++....+..+++++++++++.|.+.. ...+++|++|+
T Consensus 1 ~vl~i~~~~~~g~ag~~ad~~~~~~~g~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~ 80 (254)
T cd01173 1 RVLSIQSHVVHGYVGNSAAVFPLQRLGWDVDALPTVQFSNHTGYGTWTGFVLSAEELEDLLEGLEALGLLLEYDAVLTGY 80 (254)
T ss_pred CEEEEecceecceECCeeHHHHHHHcCCccceeCceecCCCCCCCCCCCeecCHHHHHHHHHHHHHcCCcccCCEEEEec
Confidence 68999999999999999999999999999999999998888865423578899999999999998864 22578999999
Q ss_pred cCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcC-CChhhHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCHHH
Q 021714 95 IGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLY-VPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEAD 173 (308)
Q Consensus 95 l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~-~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~d 173 (308)
+++....+.+.++++.++++.|++++++||++++++.+| .+++..+.+++.+.+++|+++||..|++.|+|.+..+.++
T Consensus 81 l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~~l~g~~~~~~~~ 160 (254)
T cd01173 81 LGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELELLTGKKINDLED 160 (254)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHHHHcCCCcCCHHH
Confidence 999999999999999998654578899999998777777 4778888888744449999999999999999998888889
Q ss_pred HHHHHHHHHHcCCCeEEEeeeecC-----CcEEEEeeeccCCCCCCcEEEEEecccC--CCCCCccHHHHHHHHHHHccC
Q 021714 174 GREACKILHAAGPAKVVITSINID-----GNLFLIGSHQKEKGQSPEQFKIVIPKIP--AYFTGTGDLMTALLLGWSNKY 246 (308)
Q Consensus 174 ~~~~~~~l~~~g~~~Vvit~g~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~t~GaGD~f~a~l~~~l~~~ 246 (308)
+.+++++|.++|++.|+||+|+.. |.++... ++.+.+..|+++ .+++||||+|+|+|+++|++
T Consensus 161 ~~~~~~~l~~~g~~~Vvit~g~~~~~~~~g~~~~~~---------~~~~~~~~~~~~~~~~~~GaGD~f~a~~~~~l~~- 230 (254)
T cd01173 161 AKAAARALHAKGPKTVVVTSVELADDDRIEMLGSTA---------TEAWLVQRPKIPFPAYFNGTGDLFAALLLARLLK- 230 (254)
T ss_pred HHHHHHHHHHhCCCEEEEEeeccCCCCcEEEEEEec---------CccEEEEeeccCCCCCcCChHHHHHHHHHHHHHc-
Confidence 999999999999999999998521 3444332 233445566666 69999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 021714 247 RDNLDIAAELAVSSLQALLQRTV 269 (308)
Q Consensus 247 g~~~~~A~~~A~a~~~~~i~~t~ 269 (308)
|.++++|+++|+++++.+++++.
T Consensus 231 g~~~~~a~~~A~~~~~~~i~~~~ 253 (254)
T cd01173 231 GKSLAEALEKALNFVHEVLEATY 253 (254)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998874
No 11
>PRK12616 pyridoxal kinase; Reviewed
Probab=100.00 E-value=2.6e-37 Score=276.70 Aligned_cols=243 Identities=20% Similarity=0.202 Sum_probs=197.6
Q ss_pred CCCeEEEEeccCccCccchhhcHHHHHhcCCc-ceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCEEE
Q 021714 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYD-VDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLL 91 (308)
Q Consensus 13 ~~~~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~-~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~v~ 91 (308)
.|++||+|+|+|++|++|+++|+++++++|+. +..+++++.||..++......+++.+.++++++.+.+.. ++++||
T Consensus 2 ~~~~vl~iaG~D~sggaGi~aD~~t~~~~g~~~~~~~T~~t~q~~~~~~~~~v~~~~~~~i~~ql~~l~~d~--~~~aik 79 (270)
T PRK12616 2 SMHKALTIAGSDSSGGAGIQADLKTFQEKNVYGMTALTVVVAMDPENSWDHQVFPIDTDTIRAQLSTIVDGI--GVDAMK 79 (270)
T ss_pred CCCeEEEEEeeCCCchHHHHHHHHHHHHcCCcccceeeEEeeEeCCCcceeEEEECCHHHHHHHHHHHHcCC--CCCEEE
Confidence 35799999999999999999999999999954 555566666776653212357888889999988887643 489999
Q ss_pred EeccCCHhHHHHHHHHHHHHHhcCCCceEEEcccccc-CCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCC-CCC
Q 021714 92 TGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF-RIG 169 (308)
Q Consensus 92 ~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~-~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~-~~~ 169 (308)
+||+++.+.++.+.++++.++ ..++|+||++++ +|..+..++..+.+++.+++.+|++|||..|++.|+|. ++.
T Consensus 80 iG~l~s~~~i~~i~~~l~~~~----~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L~g~~~~~ 155 (270)
T PRK12616 80 TGMLPTVDIIELAADTIKEKQ----LKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQLSGMGEIK 155 (270)
T ss_pred ECCCCCHHHHHHHHHHHHhcC----CCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHHcCCCCCC
Confidence 999999998988888876652 236999999985 34455556777888877999999999999999999997 577
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEeeeecCCc------EEEEeeeccCCCCCCcEEEEEecccCC-CCCCccHHHHHHHHHH
Q 021714 170 SEADGREACKILHAAGPAKVVITSINIDGN------LFLIGSHQKEKGQSPEQFKIVIPKIPA-YFTGTGDLMTALLLGW 242 (308)
Q Consensus 170 ~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~t~GaGD~f~a~l~~~ 242 (308)
+.+++.++++.|.++|++.|+||+|+ .|. +++.. ++.+.++.++++. +++||||+|+|+|+++
T Consensus 156 ~~~~~~~aa~~l~~~G~~~VvVt~G~-~g~~~~~~~~~~~~---------~~~~~~~~~~~~~~~t~GaGD~fsaalaa~ 225 (270)
T PRK12616 156 TVEQMKEAAKKIHELGAQYVVITGGG-KLKHEKAVDVLYDG---------ETAEVLESEMIDTPYTHGAGCTFSAAVTAE 225 (270)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC-CCcCCceEEEEEEC---------CeEEEEEeeeeCCCCCCcHHHHHHHHHHHH
Confidence 78889999999999999999999985 431 33321 3445566677764 7899999999999999
Q ss_pred HccCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 021714 243 SNKYRDNLDIAAELAVSSLQALLQRTVNDY 272 (308)
Q Consensus 243 l~~~g~~~~~A~~~A~a~~~~~i~~t~~~~ 272 (308)
|++ |+++++|+++|.++++.+++.+.+.+
T Consensus 226 l~~-g~~l~~Av~~A~~~~~~~i~~s~~~g 254 (270)
T PRK12616 226 LAK-GSEVKEAIYAAKEFITAAIKESFPLN 254 (270)
T ss_pred HHC-CCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 998 99999999999999999999998753
No 12
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=100.00 E-value=1.9e-37 Score=273.81 Aligned_cols=237 Identities=31% Similarity=0.438 Sum_probs=188.3
Q ss_pred CccCccchhhcHHHHHhcCCcceeeceEEe-ccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCEEEEeccCCHhHHH
Q 021714 24 TVQGYVGNKSAVFPLQLLGYDVDPIHSVQF-SNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLN 102 (308)
Q Consensus 24 ~~~G~~G~~a~~~~l~~~Gi~~~~v~t~~~-~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~v~~G~l~~~~~~~ 102 (308)
|++|++|+.+|+++++++|+.++.++|.+. +++.++. ...+++.+.+.++++.|.+.. ++++|++||+++.++++
T Consensus 1 DpsggaGi~aDi~t~~a~G~~~~~v~Talt~qn~~~~~--~~~~~~~~~~~~ql~~~~~~~--~~~aikiG~l~~~~~v~ 76 (246)
T PF08543_consen 1 DPSGGAGIQADIKTISALGVHGCPVPTALTSQNTYGVF--DIEPVDSEMIKAQLDALLEDM--KFDAIKIGYLGSAEQVE 76 (246)
T ss_dssp ETTSSSHHHHHHHHHHHTTEEEEEEEEEEEEEETTEEE--EEEE--HHHHHHHHHHHHHTS--C-SEEEE-S-SSHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCccceEeEEEEecCCcceE--EEEECCHHHHHHHHHHhcccc--cccEEEEcccCCchhhh
Confidence 689999999999999999999999988765 4544443 357888899999999998743 58999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEcccccc-CCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHH
Q 021714 103 TILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKIL 181 (308)
Q Consensus 103 ~~~~~l~~~k~~~~~~~vv~Dpv~~~-~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~d~~~~~~~l 181 (308)
.+.++++. ++.++||||+|++ .|..+.+++..+.++++|+|.+|+||||.+|++.|+|.++.+.+++.+++++|
T Consensus 77 ~i~~~l~~-----~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~g~~i~~~~~~~~~~~~l 151 (246)
T PF08543_consen 77 IIADFLKK-----PKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLTGREINSEEDIEEAAKAL 151 (246)
T ss_dssp HHHHHHHH-----TTTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHHTS--SSHHHHHHHHHHH
T ss_pred hHHHHHhc-----cCCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHhCCCCCChHhHHHHHHHH
Confidence 99888854 2569999999996 44556789999999988999999999999999999999999999999999999
Q ss_pred HHcCCCeEEEeeeec--CCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHHHccCCCCHHHHHHHHH
Q 021714 182 HAAGPAKVVITSINI--DGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNKYRDNLDIAAELAV 258 (308)
Q Consensus 182 ~~~g~~~Vvit~g~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~l~~~g~~~~~A~~~A~ 258 (308)
+++|++.|+||+++. +...+....++. ++.+.+..|+++ .+.+|+||+|+|+|+++|++ |+++++|++.|.
T Consensus 152 ~~~G~~~VvItg~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~GTGd~fss~laa~l~~-g~~l~~Av~~A~ 225 (246)
T PF08543_consen 152 LALGPKNVVITGGHLDGDEGIITDVLYDG-----GEFYWLSSPRIPTGSFHGTGDLFSSALAAFLAK-GYSLEEAVEKAK 225 (246)
T ss_dssp HHTS-SEEEEEEEEGGSSCEEEEEEEETT-----SEEEEEEEEEECTSGCTTHHHHHHHHHHHHHHT-TSSHHHHHHHHH
T ss_pred HHhCCceEEEeeeccccccccccceeeec-----cceeecceeEEcCCCCCCchhHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 999999999999974 233322222221 456777788888 78999999999999999998 999999999999
Q ss_pred HHHHHHHHHHHHhhhhc
Q 021714 259 SSLQALLQRTVNDYVTA 275 (308)
Q Consensus 259 a~~~~~i~~t~~~~~~~ 275 (308)
.+++.+++++.+.+.+.
T Consensus 226 ~~v~~~i~~t~~~g~~~ 242 (246)
T PF08543_consen 226 NFVRRAIKNTIQLGMGA 242 (246)
T ss_dssp HHHHHHHHHHHHCTSSS
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 99999999999864333
No 13
>PRK12412 pyridoxal kinase; Reviewed
Probab=100.00 E-value=9.4e-37 Score=272.89 Aligned_cols=242 Identities=24% Similarity=0.226 Sum_probs=194.1
Q ss_pred CCeEEEEeccCccCccchhhcHHHHHhcCCcceeeceEE-eccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCEEEE
Q 021714 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQ-FSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT 92 (308)
Q Consensus 14 ~~~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~~~~v~t~~-~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~v~~ 92 (308)
++.||+|+|+|++|++|+++|+++++++|+....+.|.+ .++..+.......+++.+.++++++.+.+.. ++++|++
T Consensus 1 ~~~vl~iag~D~sggaGi~aD~~t~~~lg~~~~~v~Ta~t~q~~~~~~~~~v~~~~~~~i~~q~~~l~~d~--~~~~iki 78 (268)
T PRK12412 1 LNKALTIAGSDTSGGAGIQADLKTFQELGVYGMTSLTTIVTMDPHNGWAHNVFPIPASTLKPQLETTIEGV--GVDALKT 78 (268)
T ss_pred CCeEEEEEeeCCCchHHHHHHHHHHHHcCCeeceeeeEEEeEcCCCCcEEEEEeCCHHHHHHHHHHHHhCC--CCCEEEE
Confidence 368999999999999999999999999998877776654 4554432212346678888888888777643 3899999
Q ss_pred eccCCHhHHHHHHHHHHHHHhcCCCc-eEEEccccccCC-CcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCCCCCC
Q 021714 93 GYIGSVSFLNTILQVVEKLRSINPNL-IYVCDPVMGDEG-KLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGS 170 (308)
Q Consensus 93 G~l~~~~~~~~~~~~l~~~k~~~~~~-~vv~Dpv~~~~g-~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~ 170 (308)
||+++.+.++.+.+++++. +. ++|+||++.+++ ..+..++..+.+++.+++++|++|||..|++.|+|.++.+
T Consensus 79 G~l~~~~~v~~i~~~~~~~-----~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g~~~~~ 153 (268)
T PRK12412 79 GMLGSVEIIEMVAETIEKH-----NFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAYQLSGVKINS 153 (268)
T ss_pred CCCCCHHHHHHHHHHHHhc-----CCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHHHHhCcCCCC
Confidence 9999998888777766543 33 399999998644 3445556666677679999999999999999999988888
Q ss_pred HHHHHHHHHHHHHcCCCeEEEeeeecCCc------EEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHHH
Q 021714 171 EADGREACKILHAAGPAKVVITSINIDGN------LFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWS 243 (308)
Q Consensus 171 ~~d~~~~~~~l~~~g~~~Vvit~g~~~g~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~l 243 (308)
.+++.+++++|.++|++.|+||+|+ .|. ++... +..++++.++++ .+++||||+|+|+|+++|
T Consensus 154 ~~~~~~aa~~l~~~g~~~ViIt~G~-~g~~~~~~~~~~~~---------~~~~~~~~~~v~~~~t~GaGD~f~aa~aa~l 223 (268)
T PRK12412 154 LEDMKEAAKKIHALGAKYVLIKGGS-KLGTETAIDVLYDG---------ETFDLLESEKIDTTNTHGAGCTYSAAITAEL 223 (268)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccC-CCCCCceEEEEEeC---------CEEEEEEeCccCCCCCCchHHHHHHHHHHHH
Confidence 8899999999999999999999996 432 22211 334566777777 488999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q 021714 244 NKYRDNLDIAAELAVSSLQALLQRTVNDYV 273 (308)
Q Consensus 244 ~~~g~~~~~A~~~A~a~~~~~i~~t~~~~~ 273 (308)
++ |+++++|+++|.++++.+++++.+.+.
T Consensus 224 ~~-g~~l~eA~~~A~~~~~~~i~~~~~~g~ 252 (268)
T PRK12412 224 AK-GKPVKEAVKTAKEFITAAIRYSFKINE 252 (268)
T ss_pred HC-CCCHHHHHHHHHHHHHHHHHHHhccCC
Confidence 98 999999999999999999999987543
No 14
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=8.9e-37 Score=275.25 Aligned_cols=256 Identities=16% Similarity=0.223 Sum_probs=201.6
Q ss_pred CCCCCeEEEEeccCccCccchhhcHHHHHhcCC-cceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCE
Q 021714 11 PSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGY-DVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH 89 (308)
Q Consensus 11 ~~~~~~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi-~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~ 89 (308)
+..+++||+|+|+|++|++|+.+|+++++++|+ .+..+++++.||+.++.. ...++++.++++++.+.+.. .+++
T Consensus 1 ~~~~p~VLtIAGsDpsGGAGiqADlkt~~alGv~g~sviTalTaQnt~~V~~--v~~v~~~~i~~Ql~all~D~--~i~a 76 (321)
T PTZ00493 1 MEGVSNILSIAGSDSCGGAGMQADIKTAMGLGCHCCTALVVLTAQNTKEVKR--IVEIEEKFIVEQLDSIFADV--TIDV 76 (321)
T ss_pred CCCCCEEEEEeeeCCCCchHHHHHHHHHHHcCCccceEEEEEEEEcCCceEE--EEECCHHHHHHHHHHHHhCC--CCCE
Confidence 356789999999999999999999999999994 556666777788887553 47889999999999888654 4899
Q ss_pred EEEeccCCHhHHHHHHHHHHHHHhcC-CCceEEEccccc-cCCCcCCC-hhhHHHHHHhhcccceEEcCCHHHHHHhhC-
Q 021714 90 LLTGYIGSVSFLNTILQVVEKLRSIN-PNLIYVCDPVMG-DEGKLYVP-SELVSVYREKVVPVASMLTPNQFEAEQLTG- 165 (308)
Q Consensus 90 v~~G~l~~~~~~~~~~~~l~~~k~~~-~~~~vv~Dpv~~-~~g~~~~~-~~~~~~l~~~ll~~~diitpN~~E~~~L~g- 165 (308)
||+|+|++.+.++.+.++++.+.+.. ...++|+|||+. .+|..+.+ ++.++.+++.|+|++++||||..|++.|+|
T Consensus 77 IKiGmL~s~e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN~~Ea~~L~g~ 156 (321)
T PTZ00493 77 VKLGVLYSKKIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPNFYECKVILEA 156 (321)
T ss_pred EEECCcCCHHHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCCHHHHHHHhCC
Confidence 99999999999999999998763111 123599999998 46777766 477788887899999999999999999998
Q ss_pred ----CCCCCHHHHHHHHHHHHH-cCCCeEEEeeeecCC-----c------EEEEee---ecc--CCC--CCC-----cEE
Q 021714 166 ----FRIGSEADGREACKILHA-AGPAKVVITSINIDG-----N------LFLIGS---HQK--EKG--QSP-----EQF 217 (308)
Q Consensus 166 ----~~~~~~~d~~~~~~~l~~-~g~~~Vvit~g~~~g-----~------~~~~~~---~~~--~~~--~~~-----~~~ 217 (308)
.++ +.+++.+++++|.+ +|+++|+||+|+.++ . +++... ++. ++. ..+ ..+
T Consensus 157 ~~~~~~~-~~~~~~~aA~~l~~~~G~~~VliKGGh~~~~~~~~~~~~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (321)
T PTZ00493 157 LDCQMDL-SKANMTELCKLVTEKLNINACLFKSCNVGENSAEENEVYAVDHLCIRNVGSYPTGEKQQIDAGGVTYLYDVY 235 (321)
T ss_pred CcccCCC-CHHHHHHHHHHHHHhcCCCEEEECcCCCcccccccccccceeEEecCCccccccccccccccccccccceEE
Confidence 333 46789999999986 699999999997431 1 222100 000 000 001 235
Q ss_pred EEEecccC-CCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 021714 218 KIVIPKIP-AYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQRTVNDY 272 (308)
Q Consensus 218 ~~~~~~~~-~~t~GaGD~f~a~l~~~l~~~g~~~~~A~~~A~a~~~~~i~~t~~~~ 272 (308)
++..++++ .+++|+||+|+++++++|++ |+++++|++.|..|++.+++.+.+.+
T Consensus 236 ~~~~~ri~~~~~hGTGc~fASAIAa~LA~-G~~l~~Av~~A~~fv~~aI~~s~~~g 290 (321)
T PTZ00493 236 KLRSKRKPGKDIHGTGCTLSTAIACYLAK-KHNILQSCIESKKYIYNCIRYAYPFG 290 (321)
T ss_pred EEEecccCCCCCCChHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 57778887 47899999999999999999 99999999999999999999997743
No 15
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=100.00 E-value=1.8e-36 Score=270.91 Aligned_cols=243 Identities=23% Similarity=0.304 Sum_probs=197.7
Q ss_pred CCCCCeEEEEeccCccCccchhhcHHHHHhcCCcceeeceEEec-cCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCE
Q 021714 11 PSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFS-NHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH 89 (308)
Q Consensus 11 ~~~~~~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~~~~v~t~~~~-~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~ 89 (308)
|..++.||+|+|+|++|++|+.+|+++++++|+.++.++|.+.+ ++.++.. ...++.+.+.++++.+.+.. ++++
T Consensus 1 ~~~~~~vl~i~g~d~~ggaG~~adi~~~~~~g~~~~~v~Ta~~~q~~~~~~~--~~~~~~~~~~~q~~~~~~~~--~~~a 76 (266)
T PRK06427 1 MMKRPIALTIAGSDSGGGAGIQADLKTFQALGVYGMSAITALTAQNTLGVQR--VHPIPPEFVAAQLDAVFSDI--RIDA 76 (266)
T ss_pred CCCCCEEEEEeecCCCCcHHHHHHHHHHHHcCCEEeeeeeEEEeecCCCeeE--EEeCCHHHHHHHHHHHHhcC--CCCE
Confidence 34577899999999999999999999999999999999998875 5556543 46777788888888776543 4899
Q ss_pred EEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCC-CcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCCCC
Q 021714 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEG-KLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRI 168 (308)
Q Consensus 90 v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g-~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~ 168 (308)
|++|++++.+..+.+.+++++. +..++|+||++++.+ ..+.+++..+.+++++++++|++|||..|++.|+|.++
T Consensus 77 i~iG~l~~~~~~~~i~~~~~~~----~~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~ 152 (266)
T PRK06427 77 VKIGMLASAEIIETVAEALKRY----PIPPVVLDPVMIAKSGDPLLADDAVAALRERLLPLATLITPNLPEAEALTGLPI 152 (266)
T ss_pred EEECCcCCHHHHHHHHHHHHhC----CCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhCcCeEEcCCHHHHHHHhCCCC
Confidence 9999999988777666665543 124799999999643 34566777777876689999999999999999999877
Q ss_pred CCHHH-HHHHHHHHHHcCCCeEEEeeeec-CCc----EEEEeeeccCCCCCCcEEEEEecccCC-CCCCccHHHHHHHHH
Q 021714 169 GSEAD-GREACKILHAAGPAKVVITSINI-DGN----LFLIGSHQKEKGQSPEQFKIVIPKIPA-YFTGTGDLMTALLLG 241 (308)
Q Consensus 169 ~~~~d-~~~~~~~l~~~g~~~Vvit~g~~-~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~t~GaGD~f~a~l~~ 241 (308)
.+.++ ++++++.|.++|++.|+||+|+. +|. +++.. ++.++++.++++. +++||||+|+|+|++
T Consensus 153 ~~~~~~~~~~a~~l~~~g~~~Vvit~g~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~GaGD~f~a~l~~ 223 (266)
T PRK06427 153 ADTEDEMKAAARALHALGCKAVLIKGGHLLDGEESVDWLFDG---------EGEERFSAPRIPTKNTHGTGCTLSAAIAA 223 (266)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCceeEEEEeC---------CcEEEEEeeeECCCCCCChHHHHHHHHHH
Confidence 66554 78899999999999999999952 343 33322 3455666677765 999999999999999
Q ss_pred HHccCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 021714 242 WSNKYRDNLDIAAELAVSSLQALLQRTVND 271 (308)
Q Consensus 242 ~l~~~g~~~~~A~~~A~a~~~~~i~~t~~~ 271 (308)
++++ |.++++|+++|.++++.+++++.+.
T Consensus 224 ~l~~-g~~l~~A~~~A~~~~~~~i~~~~~~ 252 (266)
T PRK06427 224 ELAK-GASLLDAVQTAKDYVTRAIRHALEI 252 (266)
T ss_pred HHHC-CCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 9998 9999999999999999999999774
No 16
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=100.00 E-value=2.1e-36 Score=266.67 Aligned_cols=234 Identities=23% Similarity=0.303 Sum_probs=195.8
Q ss_pred eEEEEeccCccCccchhhcHHHHHhcCCcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCEEEEecc
Q 021714 16 RVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYI 95 (308)
Q Consensus 16 ~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~v~~G~l 95 (308)
.||+|+|+|++|++|+.+|+++++++|++++.++|.+.+++++ ..+...+++++.+.++++.+.+.. ++++|++|++
T Consensus 1 ~vl~i~g~d~~ggag~~adi~~~~~~g~~~~~~~T~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~--~~~~i~~G~l 77 (242)
T cd01169 1 VVLTIAGSDSSGGAGIQADLKTFAALGVYGMSVITALTAQNTL-GVFGVHPVPPEFVAAQLDAVLEDI--PVDAIKIGML 77 (242)
T ss_pred CEEEEeeeCCCCHHHHHHHHHHHHHcCCEecceeEEEEeEcCc-ceeEEEECCHHHHHHHHHHHHhCC--CCCEEEECCC
Confidence 4899999999999999999999999999999999998877775 334467788888999998887643 5899999999
Q ss_pred CCHhHHHHHHHHHHHHHhcCCCceEEEccccccC-CCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCHHHH
Q 021714 96 GSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDE-GKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADG 174 (308)
Q Consensus 96 ~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~-g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~d~ 174 (308)
++.+..+.+.+++++. ++.++++||+++++ +..+.+++..+.+++.+++++|++|||..|++.|+|.+..+.++.
T Consensus 78 ~~~~~~~~i~~~~~~~----~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~~~~~~~ 153 (242)
T cd01169 78 GSAEIIEAVAEALKDY----PDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELLTGLEIATEEDM 153 (242)
T ss_pred CCHHHHHHHHHHHHhC----CCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHHhCCCCCCHHHH
Confidence 9988888777776654 36789999999863 345567777777776688999999999999999999887777778
Q ss_pred HHHHHHHHHcCCCeEEEeeeecCC-----cEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHHHccCCC
Q 021714 175 REACKILHAAGPAKVVITSINIDG-----NLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNKYRD 248 (308)
Q Consensus 175 ~~~~~~l~~~g~~~Vvit~g~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~l~~~g~ 248 (308)
.++++.+.++|++.|+||+|+ .+ .+++.. ++.++++.++++ .+++||||+|+|+|+++|++ |+
T Consensus 154 ~~~~~~l~~~g~~~Vvit~g~-~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~GaGD~f~a~l~a~l~~-g~ 222 (242)
T cd01169 154 MKAAKALLALGAKAVLIKGGH-LPGDEAVDVLYDG---------GGFFEFESPRIDTKNTHGTGCTLSSAIAANLAK-GL 222 (242)
T ss_pred HHHHHHHHhcCCCEEEEecCC-CCCCceeEEEEEC---------CcEEEEecceeCCCCCCChHHHHHHHHHHHHHC-CC
Confidence 888899999999999999996 43 233322 345666667775 69999999999999999998 99
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 021714 249 NLDIAAELAVSSLQALLQR 267 (308)
Q Consensus 249 ~~~~A~~~A~a~~~~~i~~ 267 (308)
++++|+++|.++++.++++
T Consensus 223 ~~~~A~~~A~~~~~~~i~~ 241 (242)
T cd01169 223 SLEEAVREAKEYVTQAIRN 241 (242)
T ss_pred CHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999875
No 17
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=100.00 E-value=3.7e-36 Score=267.14 Aligned_cols=235 Identities=23% Similarity=0.287 Sum_probs=192.9
Q ss_pred EEEEeccCccCccchhhcHHHHHhcCCcc-eeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCEEEEecc
Q 021714 17 VLSIQSHTVQGYVGNKSAVFPLQLLGYDV-DPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYI 95 (308)
Q Consensus 17 Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~~-~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~v~~G~l 95 (308)
||+|+|+|++|++|+++|+++++++|+.. ..+++++.||..++.. ..+++++.++++++.+.+.. ++++|++|++
T Consensus 1 vl~iag~D~sggaGi~aD~~t~~~~g~~~~~v~T~~t~q~~~~v~~--~~~~~~~~~~~q~~~~~~d~--~~~aikiG~l 76 (254)
T TIGR00097 1 ALTIAGSDSGGGAGIQADLKTFSALGVFGTSVITALTAQNTRGVTG--VYPIPPDFVEAQLDAVFSDI--PVDAAKTGML 76 (254)
T ss_pred CEEEeeeCCCcHHHHHHHHHHHHHcCCeecceeEEEEeEcCcceEE--EEECCHHHHHHHHHHHHhCC--CCCEEEECCc
Confidence 79999999999999999999999999654 4555666778777543 47888899999999888754 4899999999
Q ss_pred CCHhHHHHHHHHHHHHHhcCCCc-eEEEccccc-cCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCHHH
Q 021714 96 GSVSFLNTILQVVEKLRSINPNL-IYVCDPVMG-DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEAD 173 (308)
Q Consensus 96 ~~~~~~~~~~~~l~~~k~~~~~~-~vv~Dpv~~-~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~d 173 (308)
++.+..+.+.++++ +. +. ++|+||+++ .+|..+.+++..+.+++.+++++|++|||..|++.|+|.++.+.++
T Consensus 77 ~~~~~~~~i~~~~~---~~--~~~~vVlDPv~~~~~g~~l~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~~~~~~ 151 (254)
T TIGR00097 77 ASAEIVEAVARKLR---EY--PVRPLVVDPVMVAKSGAPLLEEEAIEALRKRLLPLATLITPNLPEAEALLGTKIRTEQD 151 (254)
T ss_pred CCHHHHHHHHHHHH---hc--CCCcEEECCccccCCCCcCCCHHHHHHHHHhccccccEecCCHHHHHHHhCCCCCCHHH
Confidence 99887776666554 33 45 699999997 4566666777777776668999999999999999999988877888
Q ss_pred HHHHHHHHHHcCCCeEEEeeeecC---Cc-EEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHHHccCCC
Q 021714 174 GREACKILHAAGPAKVVITSINID---GN-LFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNKYRD 248 (308)
Q Consensus 174 ~~~~~~~l~~~g~~~Vvit~g~~~---g~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~l~~~g~ 248 (308)
+.++++.|.++|++.|+||+|+.. +. +++.. ++.++++.++++ .+++||||+|+|+|+++|++ |+
T Consensus 152 ~~~~a~~l~~~g~~~Vvvt~G~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~d~~GaGD~f~aalaa~la~-g~ 221 (254)
T TIGR00097 152 MIKAAKKLRELGPKAVLIKGGHLEGDQAVDVLFDG---------GEIHILKAPRIETKNTHGTGCTLSAAIAANLAK-GL 221 (254)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCceeEEEEEC---------CeEEEEEecccCCCCCCChHHHHHHHHHHHHHC-CC
Confidence 999999999999999999998622 22 33322 345667777776 48999999999999999998 99
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 021714 249 NLDIAAELAVSSLQALLQRTVN 270 (308)
Q Consensus 249 ~~~~A~~~A~a~~~~~i~~t~~ 270 (308)
++++|+++|.++++.+++++.+
T Consensus 222 ~l~eA~~~A~~~~~~~i~~~~~ 243 (254)
T TIGR00097 222 SLKEAVKEAKEFVTGAIRYGLN 243 (254)
T ss_pred CHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999998876
No 18
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=5.6e-34 Score=275.83 Aligned_cols=239 Identities=21% Similarity=0.327 Sum_probs=195.4
Q ss_pred CCCeEEEEeccCccCccchhhcHHHHHhcCCcc-eeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCEEE
Q 021714 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDV-DPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLL 91 (308)
Q Consensus 13 ~~~~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~~-~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~v~ 91 (308)
.+++||+|+|+|++|++|+++|+++++++|+.. ..++++++||++++..+ ..++.+.+.++++.+.+.. .+++|+
T Consensus 229 ~~~~vLtIag~D~sggaGi~aDi~t~~~lg~~~~~~vta~t~qn~~~~~~~--~~~~~~~~~~ql~~l~~d~--~~~~Ik 304 (504)
T PTZ00347 229 KIPTVLTVSGSDSGGGAGHQADLKTLEALGVYSTSALTSLTAQNTKGVQQI--QVVNEDFFAAQIDSVMSDF--NISVVK 304 (504)
T ss_pred CCCeEEEEeCcCCCChHHHHHHHHHHHHcCCcccchheeEEeEcCcceeeE--EeCCHHHHHHHHHHHHhCC--CCCEEE
Confidence 367899999999999999999999999999776 68888999999987643 7888899999999887754 388999
Q ss_pred EeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccc-cCCCcCCC----hhhHHHHHHhhcccceEEcCCHHHHHHhhCC
Q 021714 92 TGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG-DEGKLYVP----SELVSVYREKVVPVASMLTPNQFEAEQLTGF 166 (308)
Q Consensus 92 ~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~-~~g~~~~~----~~~~~~l~~~ll~~~diitpN~~E~~~L~g~ 166 (308)
+|++++.+..+.+.++++ +.++|+|||++ .+|..+.. ++.++.+++.+++.+|++|||..|++.|+|.
T Consensus 305 ~G~l~s~e~i~~i~~~l~-------~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L~g~ 377 (504)
T PTZ00347 305 LGLVPTARQLEIVIEKLK-------NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIITPNIPEAERILGR 377 (504)
T ss_pred ECCcCCHHHHHHHHHHhc-------CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEeCCHHHHHHHhCC
Confidence 999999887777766653 45799999998 35544432 3345566656899999999999999999997
Q ss_pred C-CCCHHHHHHHHHHHHHcCCCeEEEeeeecC--C----cEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHH
Q 021714 167 R-IGSEADGREACKILHAAGPAKVVITSINID--G----NLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTAL 238 (308)
Q Consensus 167 ~-~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~--g----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~ 238 (308)
+ +.+.+++.++++.|.++|++.|+||+|+.. + .+++.. .+ ++.++++.++++ .+++||||+|+|+
T Consensus 378 ~~~~~~~~~~~aa~~l~~~G~~~VvVtgg~~~~~~~~~~~~l~~~-----~~--~~~~~~~~~~i~~~~~~GaGD~fsaa 450 (504)
T PTZ00347 378 KEITGVYEARAAAQALAQYGSRYVLVKGGHDLIDPEACRDVLYDR-----EK--DRFYEFTANRIATINTHGTGCTLASA 450 (504)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcCCCcceEEEEcC-----CC--CeEEEEEeeeECCCCCCChHHHHHHH
Confidence 4 667788889999999999999999999621 1 233321 00 234567777776 5999999999999
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 021714 239 LLGWSNKYRDNLDIAAELAVSSLQALLQRTVN 270 (308)
Q Consensus 239 l~~~l~~~g~~~~~A~~~A~a~~~~~i~~t~~ 270 (308)
|++++++ |.++++|+++|.++++.+++.+.+
T Consensus 451 iaa~la~-G~~l~eAv~~A~~~v~~~i~~~~~ 481 (504)
T PTZ00347 451 ISSFLAR-GYTVPDAVERAIGYVHEAIVRSCG 481 (504)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHHHHHhcCc
Confidence 9999998 999999999999999999998864
No 19
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=100.00 E-value=2.8e-33 Score=270.84 Aligned_cols=239 Identities=20% Similarity=0.269 Sum_probs=194.1
Q ss_pred CCeEEEEeccCccCccchhhcHHHHHhcCCcceeeceEEe-ccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCEEEE
Q 021714 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQF-SNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT 92 (308)
Q Consensus 14 ~~~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~~~~v~t~~~-~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~v~~ 92 (308)
+++||+|+|+|++|++|+.+|+++++++|+....++|.+. +++.++.. ...++.+.++++++.+.+.. .+++|++
T Consensus 9 ~~~vL~IaGsD~~gGAGi~aDl~t~~a~G~~~~~v~Talt~q~t~~v~~--~~~~~~~~~~~ql~~~~~d~--~~~aik~ 84 (502)
T PLN02898 9 VPHVLTVAGSDSGAGAGIQADIKACAARGVYCTTAITAVTAQNTVGVQG--VHAVPLDFVAEQLKSVLSDM--PVDVVKT 84 (502)
T ss_pred CCeEEEEeeeCCCcHHHHHHHHHHHHHcCCEecceeeEEEEEcCCccce--eeeCCHHHHHHHHHHHHhCC--CCCEEEE
Confidence 5789999999999999999999999999988887776554 45546543 35677777777777776533 4899999
Q ss_pred eccCCHhHHHHHHHHHHHHHhcCCCc-eEEEccccc-cCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCCC-CC
Q 021714 93 GYIGSVSFLNTILQVVEKLRSINPNL-IYVCDPVMG-DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFR-IG 169 (308)
Q Consensus 93 G~l~~~~~~~~~~~~l~~~k~~~~~~-~vv~Dpv~~-~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~-~~ 169 (308)
|++++.+.++.+.++++.. +. ++|+||++. ++|..|.+++..+.+++.+++.+|++|||..|++.|+|.. ..
T Consensus 85 G~l~~~~~i~~i~~~l~~~-----~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~~adiitPN~~Ea~~L~g~~~~~ 159 (502)
T PLN02898 85 GMLPSAEIVKVLCQALKEF-----PVKALVVDPVMVSTSGDVLAGPSILSALREELLPLATIVTPNVKEASALLGGDPLE 159 (502)
T ss_pred CCcCCHHHHHHHHHHHHhC-----CCCCEEEccccccCCCCccCCHHHHHHHHHhhhccCeEEcCCHHHHHHHhCCCCCC
Confidence 9999988777766665543 33 599999997 5788888888888888669999999999999999999853 55
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEeeeecCC-----cEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHHH
Q 021714 170 SEADGREACKILHAAGPAKVVITSINIDG-----NLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWS 243 (308)
Q Consensus 170 ~~~d~~~~~~~l~~~g~~~Vvit~g~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~l 243 (308)
+.+++.++++.|.++|++.|+||+|+..+ .+++.. ++.++++.++++ .+++||||+|+|+|++++
T Consensus 160 ~~~~~~~~a~~l~~~G~~~VvItgg~~~~~~~~~~~l~~~---------~~~~~~~~~~i~~~~t~GaGD~fsaaiaa~l 230 (502)
T PLN02898 160 TVADMRSAAKELHKLGPRYVLVKGGHLPDSLDAVDVLYDG---------TEFHELRSSRIKTRNTHGTGCTLASCIAAEL 230 (502)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCcceEEEEcC---------CeEEEEecceeCCCCCCchhhhHHHHHHHHH
Confidence 67788999999999999999999986321 233321 345566777777 589999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 021714 244 NKYRDNLDIAAELAVSSLQALLQRTVND 271 (308)
Q Consensus 244 ~~~g~~~~~A~~~A~a~~~~~i~~t~~~ 271 (308)
++ |+++++|+++|.++++.+++++.+.
T Consensus 231 ~~-G~~l~eAv~~A~~~v~~ai~~~~~~ 257 (502)
T PLN02898 231 AK-GSDMLSAVKVAKRYVETALEYSKDI 257 (502)
T ss_pred Hc-CCCHHHHHHHHHHHHHHHHHhhhcc
Confidence 98 9999999999999999999998654
No 20
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=100.00 E-value=1.1e-33 Score=254.73 Aligned_cols=258 Identities=22% Similarity=0.254 Sum_probs=215.4
Q ss_pred CCCccccCCCCCCCeEEEEeccCccCccchhhcHHHHHhcC-CcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHH
Q 021714 2 APPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLG-YDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLE 80 (308)
Q Consensus 2 ~~~~~~~~~~~~~~~Vl~i~~~~~~G~~G~~a~~~~l~~~G-i~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~ 80 (308)
.||+++++....-+.+|+|.|+|++|++|++||++++.++| +..+.++++..+|..|+.. ...++++.++++++.-.
T Consensus 11 ~~~~~t~~~~~~lPt~LTIAGSDcSGGAGIqADlKv~TAh~vYgMS~iTaltaQn~~gV~s--v~~lpp~~V~qqidacL 88 (523)
T KOG2598|consen 11 PPPMLTTASNRKLPTVLTIAGSDCSGGAGIQADLKVMTAHGVYGMSVITALTAQNTVGVYS--VHLLPPSFVSQQIDACL 88 (523)
T ss_pred CCchhhhhhhccCCeeEEEecCCCCCcccchhhhhhhhhhccchhhhhhhhhccCCcccee--eccCCHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999 6777777777788877654 36788887777776544
Q ss_pred hCCCcccCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccc-cCCCcCCChhhHHHHHHhhcccceEEcCCHHH
Q 021714 81 ANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG-DEGKLYVPSELVSVYREKVVPVASMLTPNQFE 159 (308)
Q Consensus 81 ~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~-~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E 159 (308)
.+- +|++|++|||++.+....+.+.++.++- .++|+||++. .+|..+..++.+..+.++|+|.+|+++||..|
T Consensus 89 ~Di--~C~VvKTGML~~~~I~~vi~q~l~~~~~----~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI~E 162 (523)
T KOG2598|consen 89 SDI--KCDVVKTGMLPSPEIVKVIEQSLQKFNI----PKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNIPE 162 (523)
T ss_pred hcC--cccEEeecCcCchHHHHHHHHHHHhhcC----cceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCChHH
Confidence 322 4999999999999999988888888642 3699999998 57888888999999999999999999999999
Q ss_pred HHHhhCC------CCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCc------------EEEEeeeccCCCCCCcEEEEEe
Q 021714 160 AEQLTGF------RIGSEADGREACKILHAAGPAKVVITSINIDGN------------LFLIGSHQKEKGQSPEQFKIVI 221 (308)
Q Consensus 160 ~~~L~g~------~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~------------~~~~~~~~~~~~~~~~~~~~~~ 221 (308)
+..|++. ++.+..|+++.++.+++.|+++|++++|+..-. ...+-.+ .| ++++.++.
T Consensus 163 a~~Ll~~~~~~~~~i~~v~di~~~~~~ihk~gpk~VlvkGghiP~~~~~~~s~d~~~~~~~Dvly---dG--~~F~~f~~ 237 (523)
T KOG2598|consen 163 AFILLKKEKREISKIQSVFDIAKDAAKIHKLGPKNVLVKGGHIPFNKNMMTSKDDSDKYTVDVLY---DG--KEFYIFKS 237 (523)
T ss_pred HHHHHhhcccCCcccccHHHHHHHHHHHHhcCcceEEEeCCCcCccccccccCcccCCceEEEEE---ec--ceEEEecc
Confidence 9999983 456788999999999999999999999963211 1111111 11 46777877
Q ss_pred cccC-CCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q 021714 222 PKIP-AYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQRTVNDYV 273 (308)
Q Consensus 222 ~~~~-~~t~GaGD~f~a~l~~~l~~~g~~~~~A~~~A~a~~~~~i~~t~~~~~ 273 (308)
|.+. ..++|+||++++++++.|++ |.++.+|++.|..|++.++.++.+-..
T Consensus 238 ~~~~t~~tHGtgCtLaSAIASnLA~-g~sl~qAv~~ai~yvq~Ai~~s~~i~~ 289 (523)
T KOG2598|consen 238 PYLATKHTHGTGCTLASAIASNLAR-GYSLLQAVQGAIEYVQNAIAISCDITK 289 (523)
T ss_pred cccccccccCccchHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHhcCCccc
Confidence 7776 48999999999999999998 999999999999999999999877433
No 21
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=100.00 E-value=3.3e-33 Score=271.48 Aligned_cols=242 Identities=19% Similarity=0.223 Sum_probs=196.5
Q ss_pred CCCCCCeEEEEeccCccCccchhhcHHHHHhcCCcceeeceEEe-ccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccC
Q 021714 10 LPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQF-SNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYT 88 (308)
Q Consensus 10 ~~~~~~~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~~~~v~t~~~-~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~ 88 (308)
.+..+++||+|+|+|++|++|+++|+++++++|+....++|.+. +++.++.. ...++.+.+.++++.+.+.. +++
T Consensus 25 ~~~~~~~vl~Iag~D~sGgaGi~aDl~t~~a~g~~~~~v~Talt~q~t~~v~~--v~~~~~~~i~~ql~~l~~d~--~~~ 100 (530)
T PRK14713 25 SAAATPRVLSIAGTDPSGGAGIQADLKSIAAAGGYGMAVITALVAQNTRGVRA--VHVPPADFLRAQLDAVSDDV--TVD 100 (530)
T ss_pred CCCCCCeEEEEeCcCCCcHHHHHHHHHHHHHcCCeecchhheEeeecCcceee--eccCCHHHHHHHHHHHHhCC--CCC
Confidence 34556889999999999999999999999999988888877655 44446543 35677788888888887643 489
Q ss_pred EEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccc-cCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCCC
Q 021714 89 HLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG-DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFR 167 (308)
Q Consensus 89 ~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~-~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~ 167 (308)
+|++|++++.+.++.+.++++..+ ..+||+||+++ ++|..+.+++..+.+++ +++++|+||||..|++.|+|.+
T Consensus 101 aikiG~l~s~~~i~~v~~~l~~~~----~~~vVlDPv~~~~~G~~l~~~~~~~~~~~-Ll~~advItPN~~Ea~~Ltg~~ 175 (530)
T PRK14713 101 AVKIGMLGDAEVIDAVRTWLAEHR----PPVVVLDPVMVATSGDRLLEEDAEAALRE-LVPRADLITPNLPELAVLLGEP 175 (530)
T ss_pred EEEECCcCCHHHHHHHHHHHHhCC----CCCEEECCcccCCCCCCCCCHHHHHHHHH-HhhhhheecCChHHHHHHhCCC
Confidence 999999999999999999887653 23699999996 57766667888888886 9999999999999999999976
Q ss_pred C-CCHHHHHHHHHHHHHcCCCeEEEeeeecCC----cEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHH
Q 021714 168 I-GSEADGREACKILHAAGPAKVVITSINIDG----NLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLG 241 (308)
Q Consensus 168 ~-~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~ 241 (308)
+ .+.+++.+++++|.+.+...|+||+|+..+ .+++.. + ++.++++.++++ .+++||||+|+|+|++
T Consensus 176 ~~~~~~d~~~aa~~L~~~~g~~VvItgG~~~~~~~~d~~~~~-----~---~~~~~~~~~~v~~~~t~GaGD~fsaalaa 247 (530)
T PRK14713 176 PATTWEEALAQARRLAAETGTTVLVKGGHLDGQRAPDALVGP-----D---GAVTEVPGPRVDTRNTHGTGCSLSSALAT 247 (530)
T ss_pred CCCCHHHHHHHHHHHHHhcCCEEEEeCCCCCCCcceEEEEcC-----C---CeEEEEeeeeeCCCCCCcHHHHHHHHHHH
Confidence 5 467888888999987666799999986321 233321 1 235566677777 5899999999999999
Q ss_pred HHccCCCCHHHHHHHHHHHHHHHHHHHH
Q 021714 242 WSNKYRDNLDIAAELAVSSLQALLQRTV 269 (308)
Q Consensus 242 ~l~~~g~~~~~A~~~A~a~~~~~i~~t~ 269 (308)
+|++ |.++++|+++|.++++.+++.+.
T Consensus 248 ~La~-G~~l~eAv~~A~~~v~~~i~~a~ 274 (530)
T PRK14713 248 RLGR-GGDWAAALRWATAWLHGAIAAGA 274 (530)
T ss_pred HHHC-CCCHHHHHHHHHHHHHHHHHhCC
Confidence 9998 99999999999999999999874
No 22
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=3.3e-32 Score=259.51 Aligned_cols=239 Identities=21% Similarity=0.240 Sum_probs=188.3
Q ss_pred CCeEEEEeccCccCccchhhcHHHHHhcCCcceeeceEE-eccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCEEEE
Q 021714 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQ-FSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT 92 (308)
Q Consensus 14 ~~~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~~~~v~t~~-~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~v~~ 92 (308)
.+.||+|+|+|++|++|+++|+++++++|++...++|.+ .||+.+.. ....++++.++++++.+.+.. .++++++
T Consensus 2 ~~~vltiaG~D~~ggaGi~aDi~t~~alg~~~~~v~Ta~t~Qnt~~~~--~i~~~~~~~~~~q~~a~~~d~--~~~~ik~ 77 (448)
T PRK08573 2 IPVALTIAGSDSGGGAGIEADLKTFAALGVHGAVAITSVTAQNTYEVR--AIHDLPPEVVAAQIEAVWEDM--GIDAAKT 77 (448)
T ss_pred CCEEEEEeeeCCCCHHHHHHHHHHHHHcCCeecccceEEEeecCCCce--EEEECCHHHHHHHHHHHHhcC--CCCEEEE
Confidence 468999999999999999999999999998887777654 45554433 346677766666666655432 2689999
Q ss_pred eccCCHhHHHHHHHHHHHHHhcCCCceEEEcccccc-CCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCH
Q 021714 93 GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSE 171 (308)
Q Consensus 93 G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~-~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~ 171 (308)
|++++.+... .+++.+++. +.+++|||++++ +|..+..++..+.+.+.+++++|+++||..|++.|+|.++.+.
T Consensus 78 G~l~~~e~~~---~i~~~~k~~--g~~vv~DPv~~~~sG~~l~~~~~~~~l~~~llp~adli~pN~~Ea~~L~g~~i~~~ 152 (448)
T PRK08573 78 GMLSNREIIE---AVAKTVSKY--GFPLVVDPVMIAKSGAPLLREDAVDALIKRLLPLATVVTPNRPEAEKLTGMKIRSV 152 (448)
T ss_pred CCcCCHHHHH---HHHHHHHHc--CCCEEEcCccccCCCCcCCCHHHHHHHHHhhhccCEEEcCCHHHHHHHhCCCCCCH
Confidence 9999765444 555556655 778999999984 5665556666666655589999999999999999999988888
Q ss_pred HHHHHHHHHHHH-cCCCeEEEeeeecCC---c-EEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHHHcc
Q 021714 172 ADGREACKILHA-AGPAKVVITSINIDG---N-LFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNK 245 (308)
Q Consensus 172 ~d~~~~~~~l~~-~g~~~Vvit~g~~~g---~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~l~~ 245 (308)
+++.++++.|.+ +|++.|+||+|+..| . +++.. ++.++++.++++ .+++||||+|+|+|+++|++
T Consensus 153 ~d~~~aa~~L~~~~G~~~VvVt~G~~~g~~~~~~~~~~---------~~~~~~~~~~v~~~dt~GAGDaFsAa~aa~l~~ 223 (448)
T PRK08573 153 EDARKAAKYIVEELGAEAVVVKGGHLEGEEAVDVLYHN---------GTFREFRAPRVESGCTHGTGCSFSAAIAAGLAK 223 (448)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCCCceeEEEEEC---------CeEEEEEecCcCCCCCCChHHHHHHHHHHHHHc
Confidence 899999999984 899999999985322 2 22221 345566777776 58999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh
Q 021714 246 YRDNLDIAAELAVSSLQALLQRTVND 271 (308)
Q Consensus 246 ~g~~~~~A~~~A~a~~~~~i~~t~~~ 271 (308)
|+++++|+++|++++..+++++.+-
T Consensus 224 -G~~l~eAl~~A~~~~~~al~~~~~~ 248 (448)
T PRK08573 224 -GLDPEEAIKTAKKFITMAIKYGVKI 248 (448)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999988653
No 23
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=5.7e-32 Score=240.16 Aligned_cols=237 Identities=19% Similarity=0.196 Sum_probs=182.6
Q ss_pred CCeEEEEeccCccCccchhhcHHHHHhcCCcceeece-EEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCEEEE
Q 021714 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHS-VQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT 92 (308)
Q Consensus 14 ~~~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~~~~v~t-~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~v~~ 92 (308)
.+.||+|+|+|++|++|+.+|+++++++|+....+.| ...++..|. .....+.+.+.+.++.+.. ..+.++++
T Consensus 3 ~~~vl~iag~d~~ggaG~~aD~~~~~~~~~~~~~~~t~~t~~~~~G~---~v~~~~~~~l~~~l~~l~~---~~~~~i~~ 76 (253)
T PRK12413 3 TNYILAISGNDIFSGGGLHADLATYTRNGLHGFVAVTCLTAMTEKGF---EVFPVDKEIFQQQLDSLKD---VPFSAIKI 76 (253)
T ss_pred CCeEEEEeeeCCCCHHHHHHHHHHHHHcCCccCeeeEEEecccCCce---EEEECCHHHHHHHHHHhhC---CCCCEEEE
Confidence 3579999999999999999999999999976555544 434555552 3456677788877777632 14778899
Q ss_pred eccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCC-cCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCH
Q 021714 93 GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGK-LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSE 171 (308)
Q Consensus 93 G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~-~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~ 171 (308)
|++++.+..+.+.++++. .+++++++||+++++.. ....++..+.+++ +++.+|+++||+.|++.|+|.++.+.
T Consensus 77 G~l~~~~~~~~~~~~~~~----~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~-ll~~~dli~pN~~E~~~L~g~~~~~~ 151 (253)
T PRK12413 77 GLLPNVEIAEQALDFIKG----HPGIPVVLDPVLVCKETHDVEVSELRQELIQ-FFPYVTVITPNLVEAELLSGKEIKTL 151 (253)
T ss_pred CCcCCHHHHHHHHHHHHh----CCCCCEEEcCceecCCCCccccHHHHHHHHH-HhccCcEECCCHHHHHHHhCcCCCCH
Confidence 999987766766666653 24789999999986432 1234556666664 89999999999999999999988888
Q ss_pred HHHHHHHHHHHHcCCCeEEEeeeecCC----cE-EEEeeeccCCCCCCcEEEEEecccCCCCCCccHHHHHHHHHHHccC
Q 021714 172 ADGREACKILHAAGPAKVVITSINIDG----NL-FLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTALLLGWSNKY 246 (308)
Q Consensus 172 ~d~~~~~~~l~~~g~~~Vvit~g~~~g----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~t~GaGD~f~a~l~~~l~~~ 246 (308)
+++.++++.++++|++.|+||+|+ .+ .. ++.. . +..+....+...++++||||+|+|+|+++|++
T Consensus 152 ~~~~~~a~~l~~~g~~~Vvvt~g~-~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~GaGDaf~a~~~~~l~~- 221 (253)
T PRK12413 152 EDMKEAAKKLYDLGAKAVVIKGGN-RLSQKKAIDLFYD-----G---KEFVILESPVLEKNNIGAGCTFASSIASQLVK- 221 (253)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCC-CCCCCcceEEEEc-----C---CEEEEEeecccCCCCCChHHHHHHHHHHHHHc-
Confidence 889999999999999999999985 32 11 2211 0 23333333433468999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHh
Q 021714 247 RDNLDIAAELAVSSLQALLQRTVND 271 (308)
Q Consensus 247 g~~~~~A~~~A~a~~~~~i~~t~~~ 271 (308)
|+++++|+++|.++++.+++++.+.
T Consensus 222 g~~l~ea~~~A~~~~~~~l~~~~~~ 246 (253)
T PRK12413 222 GKSPLEAVKNSKDFVYQAIQQSDQY 246 (253)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998774
No 24
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=1.7e-32 Score=275.72 Aligned_cols=243 Identities=17% Similarity=0.155 Sum_probs=196.8
Q ss_pred CCCCCCCeEEEEeccCccCccchhhcHHHHHhcCCc-ceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCccc
Q 021714 9 ALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYD-VDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYY 87 (308)
Q Consensus 9 ~~~~~~~~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~-~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~ 87 (308)
+.+..++.||+|+|+|++|++|+++|+++++++|+. +..+++++.||+.++.. ...++++.+.++++.+.+.. .+
T Consensus 236 ~~~~~~~~vLtIaGsD~sggAGi~aDlkt~~alg~~~~~viTaltaQn~~~v~~--v~~~~~~~v~~Ql~~~~~d~--~~ 311 (755)
T PRK09517 236 VNSPSAPRVLSIAGTDPTGGAGIQADLKSIAAGGGYGMCVVTALVAQNTHGVNT--IHTPPLTFLEEQLEAVFSDV--TV 311 (755)
T ss_pred cccCCCCeEEEEeccCCCcHHHHHHHHHHHHHcCCcccchheeEeeEcccceeE--EeeCCHHHHHHHHHHHHcCC--CC
Confidence 345677899999999999999999999999999954 55556677788887653 47888899999998887754 48
Q ss_pred CEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccc-cCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCC
Q 021714 88 THLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG-DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF 166 (308)
Q Consensus 88 ~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~-~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~ 166 (308)
++||+|+|++.+.++.+.+++++. ++.++|+||++. ++|..+.+++..+.+++ +++.+|+||||..|++.|+|.
T Consensus 312 ~aiKiGmL~s~e~v~~i~~~l~~~----~~~~vVlDPV~~~~sG~~l~~~~~~~~l~~-Llp~adlItPN~~Ea~~L~g~ 386 (755)
T PRK09517 312 DAVKLGMLGSADTVDLVASWLGSH----EHGPVVLDPVMVATSGDRLLDADATEALRR-LAVHVDVVTPNIPELAVLCGE 386 (755)
T ss_pred CEEEECCCCCHHHHHHHHHHHHhC----CCCCEEEecccccCCCCCCCCHHHHHHHHH-HhCcccCccCCHHHHHHHhCC
Confidence 999999999988888777766543 245799999997 46777777788888875 999999999999999999995
Q ss_pred C-CCCHHHHHHHHHHHHHcCCCeEEEeeeecC----CcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHH
Q 021714 167 R-IGSEADGREACKILHAAGPAKVVITSINID----GNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLL 240 (308)
Q Consensus 167 ~-~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~ 240 (308)
. +.+.+++.++++.|.+.+...|+||+|+.. +..++.. . +..++++.++++ .+++||||+|+|+|+
T Consensus 387 ~~~~~~~d~~~aa~~L~~~~g~~VVVkgGh~~~~~~~~~l~~~-----~---~~~~~~~~~~v~~~~t~GaGDtfsaaia 458 (755)
T PRK09517 387 APAITMDEAIAQARGFARTHGTIVIVKGGHLTGDLADNAVVRP-----D---GSVHQVENPRVNTTNSHGTGCSLSAALA 458 (755)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCEEEEcCCcCCCCccceEEEeC-----C---CeEEEEeecccCCCCCcChHHHHHHHHH
Confidence 3 456788888999998764468999998521 1222221 0 335567778877 589999999999999
Q ss_pred HHHccCCCCHHHHHHHHHHHHHHHHHHHH
Q 021714 241 GWSNKYRDNLDIAAELAVSSLQALLQRTV 269 (308)
Q Consensus 241 ~~l~~~g~~~~~A~~~A~a~~~~~i~~t~ 269 (308)
++|++ |+++++|+++|+++++.+++++.
T Consensus 459 a~La~-G~sl~eAv~~A~~~v~~~i~~a~ 486 (755)
T PRK09517 459 TLIAA-GESVEKALEWATRWLNEALRHAD 486 (755)
T ss_pred HHHHC-CCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999 99999999999999999999883
No 25
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=99.95 E-value=4.3e-27 Score=209.35 Aligned_cols=223 Identities=22% Similarity=0.235 Sum_probs=180.8
Q ss_pred eEEEEeccC--ccCccchhh-cHHH--HHhcCCcceeece-------E-Ee-c-c--CCCCCCceeeeCCHHHHHHHHHH
Q 021714 16 RVLSIQSHT--VQGYVGNKS-AVFP--LQLLGYDVDPIHS-------V-QF-S-N--HTGYPTFKGQVLNGQQLCDLIEG 78 (308)
Q Consensus 16 ~Vl~i~~~~--~~G~~G~~a-~~~~--l~~~Gi~~~~v~t-------~-~~-~-~--~tg~~~~~g~~~~~~~~~~~l~~ 78 (308)
+||.-.|.. +.||+|... +.+. |+..|++..|++. + +. + + .|.++. .|+.+++++++++++.
T Consensus 44 ~vL~~lG~~~~a~GflGg~tg~~~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tein~-~Gp~is~~~~~~~l~~ 122 (310)
T COG1105 44 RVLKDLGIPVTALGFLGGFTGEFFVALLKDEGIPDAFVEVKGDTRINVKILDEEDGEETEINF-PGPEISEAELEQFLEQ 122 (310)
T ss_pred HHHHHcCCCceEEEecCCccHHHHHHHHHhcCCCceEEEccCCCeeeEEEEecCCCcEEEecC-CCCCCCHHHHHHHHHH
Confidence 355555633 789999644 3333 7889999888863 1 11 1 2 455553 6899999999999999
Q ss_pred HHhCCCcccC-EEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCH
Q 021714 79 LEANNLLYYT-HLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQ 157 (308)
Q Consensus 79 l~~~~~~~~~-~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~ 157 (308)
+...-. ..| +|+.|++|+....+.+.++++.++++ ++++++|. +|. ++++.|-..+++|+||.
T Consensus 123 ~~~~l~-~~d~VvlsGSlP~g~~~d~y~~li~~~~~~--g~~vilD~----Sg~---------~L~~~L~~~P~lIKPN~ 186 (310)
T COG1105 123 LKALLE-SDDIVVLSGSLPPGVPPDAYAELIRILRQQ--GAKVILDT----SGE---------ALLAALEAKPWLIKPNR 186 (310)
T ss_pred HHHhcc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHhc--CCeEEEEC----ChH---------HHHHHHccCCcEEecCH
Confidence 887322 255 67889999999999999999999998 88999998 552 33443444699999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHH
Q 021714 158 FEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMT 236 (308)
Q Consensus 158 ~E~~~L~g~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~ 236 (308)
+|++.++|.+..+.+|+.++++.|+..|+++|+|++|. +|+++.+. ++.|+...|+++ ++++||||+++
T Consensus 187 ~EL~~~~g~~~~~~~d~i~~a~~l~~~g~~~ViVSlG~-~Gal~~~~---------~~~~~a~~p~~~vvstVGAGDs~V 256 (310)
T COG1105 187 EELEALFGRELTTLEDVIKAARELLAEGIENVIVSLGA-DGALLVTA---------EGVYFASPPKVQVVSTVGAGDSMV 256 (310)
T ss_pred HHHHHHhCCCCCChHHHHHHHHHHHHCCCCEEEEEecC-cccEEEcc---------CCeEEEeCCCcceecCcCchHHHH
Confidence 99999999999999999999999999999999999995 99999865 567878778877 49999999999
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Q 021714 237 ALLLGWSNKYRDNLDIAAELAVSSLQALLQ 266 (308)
Q Consensus 237 a~l~~~l~~~g~~~~~A~~~A~a~~~~~i~ 266 (308)
|+|++++.+ ++++++++++|.+++...+.
T Consensus 257 AGf~~~~~~-~~~~e~~l~~avA~g~a~~~ 285 (310)
T COG1105 257 AGFLAGLLK-GKSLEEALRFAVACGAAAAS 285 (310)
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHHhh
Confidence 999999998 99999999999998777664
No 26
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.90 E-value=5.1e-22 Score=176.43 Aligned_cols=227 Identities=20% Similarity=0.142 Sum_probs=151.5
Q ss_pred CCCCCCeEEEEeccCccCccchhhcHHHHHhcCCcceeeceEEeccCCC----C-CCceeeeCCHHHHHHHHHHHHhCCC
Q 021714 10 LPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTG----Y-PTFKGQVLNGQQLCDLIEGLEANNL 84 (308)
Q Consensus 10 ~~~~~~~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~~~~v~t~~~~~~tg----~-~~~~g~~~~~~~~~~~l~~l~~~~~ 84 (308)
-+.++|+||+|.|++.+|++|..++..+++ .|....++-+. ++... + +.+....+..+..+++.+.+.
T Consensus 4 hK~~~g~vl~i~Gs~~~~GA~~la~~~a~~-~G~g~vt~~~~--~~~~~~~~~~~pe~i~~~~~~~~~~~~~~~~~---- 76 (254)
T cd01171 4 HKGSRGRVLVIGGSRGYTGAAYLAALAALR-AGAGLVTVATP--PEAAAVIKSYSPELMVHPLLETDIEELLELLE---- 76 (254)
T ss_pred CCcCCCeEEEEeCCCCCccHHHHHHHHHHH-HccCEEEEEEC--HhhHHHHHhcCceeeEecccccchHHHHhhhc----
Confidence 356799999999999999999999887776 45544433222 11110 0 111112222222222332222
Q ss_pred cccCEEEEec-cCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHh
Q 021714 85 LYYTHLLTGY-IGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQL 163 (308)
Q Consensus 85 ~~~~~v~~G~-l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L 163 (308)
+++++++|+ +++.+ .+.++++.++++ +.++|+||. +..+..... +. .+.+.++++|||..|++.|
T Consensus 77 -~~d~v~ig~gl~~~~---~~~~i~~~~~~~--~~pvVlDa~----~~~~~~~~~-~~---~~~~~~~iltPn~~E~~~L 142 (254)
T cd01171 77 -RADAVVIGPGLGRDE---EAAEILEKALAK--DKPLVLDAD----ALNLLADEP-SL---IKRYGPVVLTPHPGEFARL 142 (254)
T ss_pred -cCCEEEEecCCCCCH---HHHHHHHHHHhc--CCCEEEEcH----HHHHhhcCh-hh---hccCCCEEECCCHHHHHHH
Confidence 478999998 88753 455666666665 778999984 211111110 00 1467899999999999999
Q ss_pred hCCCCCC-HHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHH
Q 021714 164 TGFRIGS-EADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLG 241 (308)
Q Consensus 164 ~g~~~~~-~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~ 241 (308)
+|.+..+ .++..++++++.+++...|++|+. +.+++.. ++.+++..++.+ .+++|+||+|+|++++
T Consensus 143 ~g~~~~~~~~~~~~~a~~l~~~~~~~vvlkG~---~~~i~~~---------~~~~~~~~~~~~~~~~~GaGD~lag~iaa 210 (254)
T cd01171 143 LGALVEEIQADRLAAAREAAAKLGATVVLKGA---VTVIADP---------DGRVYVNPTGNPGLATGGSGDVLAGIIAA 210 (254)
T ss_pred hCCChhhhhhHHHHHHHHHHHHcCcEEEEcCC---CCEEECC---------CCcEEEECCCCcccccCchHHHHHHHHHH
Confidence 9987644 335678888898887666776652 4566532 233445555555 4899999999999999
Q ss_pred HHccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 021714 242 WSNKYRDNLDIAAELAVSSLQALLQRTVN 270 (308)
Q Consensus 242 ~l~~~g~~~~~A~~~A~a~~~~~i~~t~~ 270 (308)
.+++ |.++.+|+++|+.+...+.+...+
T Consensus 211 ~la~-g~~~~eA~~~A~~~~~~a~~~~~~ 238 (254)
T cd01171 211 LLAQ-GLSPLEAAALAVYLHGLAGDLAAK 238 (254)
T ss_pred HHHc-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 999999999998888888776655
No 27
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.85 E-value=7.4e-20 Score=164.12 Aligned_cols=221 Identities=19% Similarity=0.079 Sum_probs=140.7
Q ss_pred cCCCCCCCeEEEEeccCccCccchhhcHHHHHhcCCcceeeceEEecc-CCCCCCceeeeCCHHHHHHHHHHHHhCCCcc
Q 021714 8 LALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSN-HTGYPTFKGQVLNGQQLCDLIEGLEANNLLY 86 (308)
Q Consensus 8 ~~~~~~~~~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~~~~v~t~~~~~-~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~ 86 (308)
-+-+.++|+||+|.|++.+++++..++...++. |.....+.+. ++ .+.+.. .++.+...++....+.+.+.-. .
T Consensus 18 ~~~K~~~G~vliiaGs~~~~GA~ila~l~~~~~-g~~~v~~~~~--~~~~~~i~~-~~pe~~~~~~~~~~~~~~~~~~-~ 92 (272)
T TIGR00196 18 NSHKGQYGRVLIIGGSDDYSGAPLLAALAALRA-GAGLVTVAAP--ENVITLINS-VSPELIVHRLGWKVDEDEELLE-R 92 (272)
T ss_pred CCCCCCCCeEEEEeCCCCCCcHHHHHHHHHHHh-CCCeEEEEEc--hhhHHHHhh-cCCEEEEecchhhHHHHHhhhc-c
Confidence 345778999999999999999999887666654 4433332222 22 111111 1122222222222222322110 3
Q ss_pred cCEEEEec-cCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhC
Q 021714 87 YTHLLTGY-IGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (308)
Q Consensus 87 ~~~v~~G~-l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g 165 (308)
+|++++|. +++... +.++++.+++. +.++|+||. |..+ .+... ...+.+++||||..|++.|+|
T Consensus 93 ~davvig~Gl~~~~~---~~~l~~~~~~~--~~pvVlDa~----g~~l-----~~~~~-~~~~~~~vItPN~~El~~L~g 157 (272)
T TIGR00196 93 YDVVVIGPGLGQDPS---FKKAVEEVLEL--DKPVVLDAD----ALNL-----LTYDK-PKREGEVILTPHPGEFKRLLG 157 (272)
T ss_pred CCEEEEcCCCCCCHH---HHHHHHHHHhc--CCCEEEEhH----HHHH-----Hhhcc-cccCCCEEECCCHHHHHHHhC
Confidence 78888887 877654 55677777765 779999982 3211 01100 013468999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHHHc
Q 021714 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSN 244 (308)
Q Consensus 166 ~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~l~ 244 (308)
.+..+.+++.+++++|.+++...|++|++ .+. ++.. + +..|.. .+..+ .+++|+||+|+|.++++++
T Consensus 158 ~~~~~~~~~~~aa~~l~~~~~~vVv~kG~--~~~-i~~~-----~---~~~~~~-~~~~~~~~~~GaGD~lag~iaa~la 225 (272)
T TIGR00196 158 LVNEIQGDRLEAAQDIAQKLQAVVVLKGA--ADV-IAAP-----D---GDLWIN-KTGNAALAKGGTGDVLAGLIGGLLA 225 (272)
T ss_pred CchhhhhhHHHHHHHHHHHhCCEEEEcCC--CCE-EEcC-----C---CeEEEE-CCCCCccCCCCchHHHHHHHHHHHh
Confidence 87666778889999998776555666654 444 3322 0 234433 33344 4789999999999999999
Q ss_pred cCCCCHHHHHHHHHHHH
Q 021714 245 KYRDNLDIAAELAVSSL 261 (308)
Q Consensus 245 ~~g~~~~~A~~~A~a~~ 261 (308)
+ |.++.+|+..|...-
T Consensus 226 ~-g~~~~~A~~~a~~~~ 241 (272)
T TIGR00196 226 Q-NLDPFDAACNAAFAH 241 (272)
T ss_pred C-CCCHHHHHHHHHHHH
Confidence 8 999999998774443
No 28
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=99.85 E-value=1.5e-19 Score=164.24 Aligned_cols=174 Identities=22% Similarity=0.189 Sum_probs=131.3
Q ss_pred eCCHHHHHHHHHHHHhCCCcccCEEE-EeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHH
Q 021714 66 VLNGQQLCDLIEGLEANNLLYYTHLL-TGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYRE 144 (308)
Q Consensus 66 ~~~~~~~~~~l~~l~~~~~~~~~~v~-~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~ 144 (308)
.++.+++..+++.+.+.- ...+.+. .|+.+.....+.+.++++.+++. +.++++||... .+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~l-~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~--~~~v~~D~~~~-------------~~~~ 171 (304)
T TIGR03828 108 EISEEELEALLEKLRAQL-AEGDWLVLSGSLPPGVPPDFYAELIALAREK--GAKVILDTSGE-------------ALRD 171 (304)
T ss_pred CCCHHHHHHHHHHHHHhc-cCCCEEEEECCCCCCCCHHHHHHHHHHHHHc--CCEEEEECChH-------------HHHH
Confidence 455566666665554221 1367544 47766544456677888888876 78899999421 1222
Q ss_pred hhcccceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEeccc
Q 021714 145 KVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKI 224 (308)
Q Consensus 145 ~ll~~~diitpN~~E~~~L~g~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (308)
.+...+|+++||+.|++.|+|.+..+.+++.++++.+.++|++.|++|.|. +|.+++.. ++.++++.+++
T Consensus 172 ~~~~~~~i~~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~-~G~~~~~~---------~~~~~~~~~~~ 241 (304)
T TIGR03828 172 GLKAKPFLIKPNDEELEELFGRELKTLEEIIEAARELLDLGAENVLISLGA-DGALLVTK---------EGALFAQPPKG 241 (304)
T ss_pred HHhcCCcEECcCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEccCC-CCcEEEcC---------CceEEEeCCCc
Confidence 233468999999999999999877777888888999999999999999995 89877643 34555666666
Q ss_pred C-CCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Q 021714 225 P-AYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQ 266 (308)
Q Consensus 225 ~-~~t~GaGD~f~a~l~~~l~~~g~~~~~A~~~A~a~~~~~i~ 266 (308)
+ +|++||||+|+|+|+++|.+ |.++++|+++|+++++.++.
T Consensus 242 ~vvDttGAGDaF~a~~l~~l~~-g~~~~~a~~~a~~~Aa~~~~ 283 (304)
T TIGR03828 242 EVVSTVGAGDSMVAGFLAGLES-GLSLEEALRLAVAAGSAAAF 283 (304)
T ss_pred cccCCcChHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhc
Confidence 5 59999999999999999998 99999999999998887775
No 29
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=99.84 E-value=2.6e-19 Score=161.79 Aligned_cols=153 Identities=24% Similarity=0.304 Sum_probs=120.4
Q ss_pred cCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCC
Q 021714 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF 166 (308)
Q Consensus 87 ~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~ 166 (308)
.+.+.+.. ....+.+.++++.++++ +.++++||..... .++ .+++.+|+++||+.|++.|+|.
T Consensus 130 ~~~v~~~~---~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~~-----------~~~-~~~~~~dil~~n~~E~~~l~~~ 192 (292)
T cd01174 130 ADVLLLQL---EIPLETVLAALRAARRA--GVTVILNPAPARP-----------LPA-ELLALVDILVPNETEAALLTGI 192 (292)
T ss_pred CCEEEEeC---CCCHHHHHHHHHHHHhc--CCEEEEeCCCcCc-----------CcH-HHHhhCCEEeeCHHHHHHHhCC
Confidence 66655432 11234666788888876 7899999954310 112 3788999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHHHcc
Q 021714 167 RIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNK 245 (308)
Q Consensus 167 ~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~l~~ 245 (308)
+..+.+++.++++.+.+.|++.|++|.|. +|.++... ++.++++.++.+ +|++||||+|+|+|++++.+
T Consensus 193 ~~~~~~~~~~~~~~l~~~g~~~vvvt~G~-~G~~~~~~---------~~~~~~~~~~~~~vdt~GaGD~F~ag~l~~l~~ 262 (292)
T cd01174 193 EVTDEEDAEKAARLLLAKGVKNVIVTLGA-KGALLASG---------GEVEHVPAFKVKAVDTTGAGDTFIGALAAALAR 262 (292)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEeCC-CceEEEeC---------CceEEecCCCcccCCCCCcHHHHHHHHHHHHHc
Confidence 77777778888899989999999999995 88887643 345566655555 59999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 021714 246 YRDNLDIAAELAVSSLQALLQR 267 (308)
Q Consensus 246 ~g~~~~~A~~~A~a~~~~~i~~ 267 (308)
|.++++|+++|+++++.++++
T Consensus 263 -g~~~~~al~~a~~~Aa~~~~~ 283 (292)
T cd01174 263 -GLSLEEAIRFANAAAALSVTR 283 (292)
T ss_pred -CCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999988888763
No 30
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=99.84 E-value=1.9e-19 Score=164.37 Aligned_cols=175 Identities=18% Similarity=0.211 Sum_probs=133.0
Q ss_pred eeCCHHHHHHHHHHHHhCCCcccC-EEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHH
Q 021714 65 QVLNGQQLCDLIEGLEANNLLYYT-HLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYR 143 (308)
Q Consensus 65 ~~~~~~~~~~~l~~l~~~~~~~~~-~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~ 143 (308)
..++.++++.+.+.+.... ..+ +++.|+++...+.+.+.++++.++++ +.++++||. +. .++
T Consensus 111 ~~~~~~~~~~l~~~~~~~~--~~~~~~i~g~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~----~~---------~~~ 173 (309)
T PRK10294 111 AALNEDEFRQLEEQVLEIE--SGAILVISGSLPPGVKLEKLTQLISAAQKQ--GIRCIIDSS----GD---------ALS 173 (309)
T ss_pred CCCCHHHHHHHHHHHHhcC--CCCEEEEeCCCCCCCCHHHHHHHHHHHHHc--CCeEEEeCC----CH---------HHH
Confidence 3455566665555444322 255 45568887666667788888888876 889999994 21 112
Q ss_pred H-hhcccceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEe
Q 021714 144 E-KVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAG-PAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVI 221 (308)
Q Consensus 144 ~-~ll~~~diitpN~~E~~~L~g~~~~~~~d~~~~~~~l~~~g-~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 221 (308)
. ..++.+++++||.+|+..|+|.+..+.+++.++++.+++.+ ++.|+||.|. +|.++... ++.++++.
T Consensus 174 ~~~~~~~~~~i~~n~~E~~~l~g~~~~~~~~~~~a~~~l~~~~~~~~vvvT~G~-~G~~~~~~---------~~~~~~~~ 243 (309)
T PRK10294 174 AALAIGNIELVKPNQKELSALVNRDLTQPDDVRKAAQELVNSGKAKRVVVSLGP-QGALGVDS---------ENCIQVVP 243 (309)
T ss_pred HHHhcCCCeEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCCEEEEecCC-CceEEEcC---------CccEEEeC
Confidence 1 12468999999999999999987777778888999998877 7999999995 89887643 34455665
Q ss_pred cccC-CCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHH
Q 021714 222 PKIP-AYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQR 267 (308)
Q Consensus 222 ~~~~-~~t~GaGD~f~a~l~~~l~~~g~~~~~A~~~A~a~~~~~i~~ 267 (308)
++++ +||+||||+|+|+|++++.+ |+++++|+++|++++..++.+
T Consensus 244 ~~v~vvDttGAGDaf~ag~l~~l~~-g~~~~~al~~a~a~aa~~v~~ 289 (309)
T PRK10294 244 PPVKSQSTVGAGDSMVGAMTLKLAE-NASLEEMVRFGVAAGSAATLN 289 (309)
T ss_pred CCcccCCCcchHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcC
Confidence 5555 59999999999999999998 999999999999988777753
No 31
>PRK11142 ribokinase; Provisional
Probab=99.84 E-value=2.1e-19 Score=163.57 Aligned_cols=168 Identities=20% Similarity=0.231 Sum_probs=125.8
Q ss_pred eCCHHHHHHHHHHHHhCCCcccCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHh
Q 021714 66 VLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREK 145 (308)
Q Consensus 66 ~~~~~~~~~~l~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ 145 (308)
.+++++++...+.+. ..+.+.+.. ....+.+.++++.++++ +.++++||.... . +...
T Consensus 117 ~~~~~~~~~~~~~l~-----~~~~v~~~~---~~~~~~~~~~~~~a~~~--g~~v~~d~~~~~---~---------~~~~ 174 (306)
T PRK11142 117 ALTPALVEAHRELIA-----NADALLMQL---ETPLETVLAAAKIAKQH--GTKVILNPAPAR---E---------LPDE 174 (306)
T ss_pred cCCHHHHHHHHhhhc-----cCCEEEEeC---CCCHHHHHHHHHHHHHc--CCEEEEECCCCc---c---------cCHH
Confidence 344455544444343 366555432 11235666788888876 789999995321 0 1123
Q ss_pred hcccceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC
Q 021714 146 VVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP 225 (308)
Q Consensus 146 ll~~~diitpN~~E~~~L~g~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (308)
+++++|+++||+.|++.++|....+.++..++++.+.++|++.|++|.|. +|.++... ++.++.+.+.++
T Consensus 175 ~~~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~-~G~~~~~~---------~~~~~~~~~~v~ 244 (306)
T PRK11142 175 LLALVDIITPNETEAEKLTGIRVEDDDDAAKAAQVLHQKGIETVLITLGS-RGVWLSEN---------GEGQRVPGFRVQ 244 (306)
T ss_pred HHhhCCEEcCCHHHHHHHhCCCCCChHHHHHHHHHHHHhCCCeEEEEECC-CcEEEEeC---------CcceeccCCCcc
Confidence 77899999999999999999877677778888888888899999999995 89877643 345566655665
Q ss_pred -CCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Q 021714 226 -AYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQ 266 (308)
Q Consensus 226 -~~t~GaGD~f~a~l~~~l~~~g~~~~~A~~~A~a~~~~~i~ 266 (308)
+||+||||+|.|+|++++++ |.++++|+++|+++++.++.
T Consensus 245 vvDt~GAGDaF~Agfi~~l~~-g~~~~~al~~a~~~Aa~~~~ 285 (306)
T PRK11142 245 AVDTIAAGDTFNGALVTALLE-GKPLPEAIRFAHAAAAIAVT 285 (306)
T ss_pred cccCCCchhHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHcC
Confidence 59999999999999999998 99999999999998877775
No 32
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=99.84 E-value=3e-19 Score=161.34 Aligned_cols=174 Identities=22% Similarity=0.209 Sum_probs=132.1
Q ss_pred eCCHHHHHHHHHHHHhCCCcccCEEEE-eccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHH
Q 021714 66 VLNGQQLCDLIEGLEANNLLYYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYRE 144 (308)
Q Consensus 66 ~~~~~~~~~~l~~l~~~~~~~~~~v~~-G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~ 144 (308)
.++.++++.+++.+.+... .++++.+ |.++.....+.+.++++.+++. +.++++||... .+.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~--~~~i~~D~~~~-------------~~~~ 172 (289)
T cd01164 109 EISEEELEALLEKLKALLK-KGDIVVLSGSLPPGVPADFYAELVRLAREK--GARVILDTSGE-------------ALLA 172 (289)
T ss_pred CCCHHHHHHHHHHHHHhcC-CCCEEEEeCCCCCCcCHHHHHHHHHHHHHc--CCeEEEECChH-------------HHHH
Confidence 3555566666555433211 3675544 7777544445666777777766 78899999421 1222
Q ss_pred hhcccceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEeccc
Q 021714 145 KVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKI 224 (308)
Q Consensus 145 ~ll~~~diitpN~~E~~~L~g~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (308)
.+.+.+|+++||+.|++.++|....+.+++.++++.|.+.|++.|++|.|. +|+++... ++.++++.++.
T Consensus 173 ~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivt~G~-~G~~~~~~---------~~~~~~~~~~~ 242 (289)
T cd01164 173 ALAAKPFLIKPNREELEELFGRPLGDEEDVIAAARKLIERGAENVLVSLGA-DGALLVTK---------DGVYRASPPKV 242 (289)
T ss_pred HHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEecCC-CCCEEEcC---------CcEEEecCCCc
Confidence 233799999999999999999877777888899999999999999999995 89877643 35566666666
Q ss_pred C-CCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Q 021714 225 P-AYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQ 266 (308)
Q Consensus 225 ~-~~t~GaGD~f~a~l~~~l~~~g~~~~~A~~~A~a~~~~~i~ 266 (308)
+ +|++||||+|+|+|++++.+ |+++++|+++|+++++..+.
T Consensus 243 ~vvDttGAGDaf~a~~i~~l~~-g~~~~~a~~~A~~~Aa~~~~ 284 (289)
T cd01164 243 KVVSTVGAGDSMVAGFVAGLAQ-GLSLEEALRLAVAAGSATAF 284 (289)
T ss_pred cccCCCChHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhc
Confidence 6 59999999999999999998 99999999999998887775
No 33
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=99.84 E-value=3.4e-19 Score=162.90 Aligned_cols=156 Identities=19% Similarity=0.193 Sum_probs=126.3
Q ss_pred ccCEE-EEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhh
Q 021714 86 YYTHL-LTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (308)
Q Consensus 86 ~~~~v-~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~ 164 (308)
+++++ ..|++++....+.+.++++.++++ +.++++||+.. .+.+.+...+++++||.+|+..|+
T Consensus 131 ~~d~v~~~g~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~-------------~~~~~~~~~~~~l~~n~~E~~~l~ 195 (312)
T PRK09513 131 QFDMVAVSGSLPRGVSPEAFTDWMTRLRSQ--CPCIIFDSSRE-------------ALVAGLKAAPWLVKPNRRELEIWA 195 (312)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHhc--CCEEEEECChH-------------HHHHHhccCCeEEcCCHHHHHHHh
Confidence 47764 668888766667888889988876 78999999421 122235567899999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHHH
Q 021714 165 GFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWS 243 (308)
Q Consensus 165 g~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~l 243 (308)
|.+..+.+++.++++.+.++|++.|++|.|. +|.+++.. ++.++.+.++++ +||+||||+|+|+|++++
T Consensus 196 g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~-~G~~~~~~---------~~~~~~~~~~~~~vDttGAGDaf~ag~i~~l 265 (312)
T PRK09513 196 GRKLPELKDVIEAAHALREQGIAHVVISLGA-EGALWVNA---------SGEWIAKPPACDVVSTVGAGDSMVGGLIYGL 265 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEEeCC-CCcEEEeC---------CceEEecCCCccccCCCChHHHHHHHHHHHH
Confidence 9877777788888888989999999999995 89887643 344556666666 599999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHH
Q 021714 244 NKYRDNLDIAAELAVSSLQALLQR 267 (308)
Q Consensus 244 ~~~g~~~~~A~~~A~a~~~~~i~~ 267 (308)
++ |+++++|+++|+++++.++.+
T Consensus 266 ~~-g~~~~~a~~~A~a~Aa~~~~~ 288 (312)
T PRK09513 266 LM-RESSEHTLRLATAVSALAVSQ 288 (312)
T ss_pred Hc-CCCHHHHHHHHHHHHHHHhhC
Confidence 98 999999999999998888875
No 34
>PTZ00292 ribokinase; Provisional
Probab=99.84 E-value=2.1e-19 Score=165.16 Aligned_cols=175 Identities=19% Similarity=0.226 Sum_probs=128.0
Q ss_pred eCCHHHHHHHHHHHHhCCCcc-cCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHH
Q 021714 66 VLNGQQLCDLIEGLEANNLLY-YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYRE 144 (308)
Q Consensus 66 ~~~~~~~~~~l~~l~~~~~~~-~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~ 144 (308)
.+++++++.+.+.+. + .+.+++.. ....+.+.++++.+++. ++++++||..+.. .+. .+.+.+
T Consensus 131 ~~~~~~~~~~~~~i~-----~~~~~~~~~~---~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~~--~~~----~~~~~~ 194 (326)
T PTZ00292 131 ALTPQMVDAQTDNIQ-----NICKYLICQN---EIPLETTLDALKEAKER--GCYTVFNPAPAPK--LAE----VEIIKP 194 (326)
T ss_pred cCCHHHHHHHHHHhh-----hhCCEEEECC---CCCHHHHHHHHHHHHHc--CCEEEEECCCCcc--ccc----cccHHH
Confidence 344555554444444 3 45554321 22234556777788776 7899999975421 111 123444
Q ss_pred hhcccceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEeccc
Q 021714 145 KVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKI 224 (308)
Q Consensus 145 ~ll~~~diitpN~~E~~~L~g~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (308)
+++++|+++||+.|++.|+|.+..+.+++.++++.+.+.|++.|++|.|. +|+++.... +..++++.++.
T Consensus 195 -~l~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~-~Ga~~~~~~--------~~~~~~~~~~~ 264 (326)
T PTZ00292 195 -FLKYVSLFCVNEVEAALITGMEVTDTESAFKASKELQQLGVENVIITLGA-NGCLIVEKE--------NEPVHVPGKRV 264 (326)
T ss_pred -HHhcCCEEcCCHHHHHHHhCCCCCChhHHHHHHHHHHHcCCCeEEEEeCC-CcEEEEeCC--------CceEEccCCcc
Confidence 78899999999999999999877667777888888888899999999995 898876530 23456666565
Q ss_pred C-CCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHH
Q 021714 225 P-AYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQR 267 (308)
Q Consensus 225 ~-~~t~GaGD~f~a~l~~~l~~~g~~~~~A~~~A~a~~~~~i~~ 267 (308)
+ +|++||||+|.|+|++++++ |+++++|+++|+++++.++.+
T Consensus 265 ~vvDttGAGDaF~ag~l~~l~~-g~~~~~al~~a~a~Aa~~v~~ 307 (326)
T PTZ00292 265 KAVDTTGAGDCFVGSMAYFMSR-GKDLKESCKRANRIAAISVTR 307 (326)
T ss_pred ccCCCcchHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCC
Confidence 5 59999999999999999998 999999999999988877753
No 35
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=99.84 E-value=3.3e-19 Score=162.78 Aligned_cols=179 Identities=16% Similarity=0.064 Sum_probs=130.2
Q ss_pred eCCHHHHHHHHHHHHhCCCcccCEE-EEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHH
Q 021714 66 VLNGQQLCDLIEGLEANNLLYYTHL-LTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYRE 144 (308)
Q Consensus 66 ~~~~~~~~~~l~~l~~~~~~~~~~v-~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~ 144 (308)
.++.+....+++.+.+.- ...+.+ ..|+++...+.+.+.++++.++++ ++++++||...+ ...+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~-~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~----------~~~~~~ 173 (309)
T PRK13508 107 EISVQEADGFLHHFKQLL-ESVEVVAISGSLPAGLPVDYYAQLIELANQA--GKPVVLDCSGAA----------LQAVLE 173 (309)
T ss_pred CCCHHHHHHHHHHHHHhc-cCCCEEEEeCCCCCCcCHHHHHHHHHHHHHC--CCEEEEECCcHH----------HHHHHh
Confidence 344444444444443221 136755 457766543446677788888876 889999994221 112222
Q ss_pred hhcccceEEcCCHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecc
Q 021714 145 KVVPVASMLTPNQFEAEQLTGFRIG-SEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPK 223 (308)
Q Consensus 145 ~ll~~~diitpN~~E~~~L~g~~~~-~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (308)
.+..+|+++||..|++.++|.+.. +.+++.++++++...|++.|++|+|. +|+++... ++.++.+.+.
T Consensus 174 -~~~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~~~~~~g~~~vvvT~G~-~G~~~~~~---------~~~~~~~~~~ 242 (309)
T PRK13508 174 -SPYKPTVIKPNIEELSQLLGKEVSEDLDELKEVLQQPLFEGIEWIIVSLGA-DGAFAKHN---------DTFYKVDIPK 242 (309)
T ss_pred -ccCCceEEccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCC-CceEEEeC---------CceEEEeCCC
Confidence 357899999999999999997653 45677777777778899999999995 89877643 4556666666
Q ss_pred cC-CCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHH
Q 021714 224 IP-AYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQRTV 269 (308)
Q Consensus 224 ~~-~~t~GaGD~f~a~l~~~l~~~g~~~~~A~~~A~a~~~~~i~~t~ 269 (308)
++ +||+||||+|.|+|+++|++ |+++++|+++|+++++.++.+..
T Consensus 243 v~vvDttGAGDaF~Agfi~~l~~-g~~~~~al~~a~a~aa~~~~~~~ 288 (309)
T PRK13508 243 IEVVNPVGSGDSTVAGIASGLLH-QEDDADLLKKANVLGMLNAQEKQ 288 (309)
T ss_pred ccccCCcChhHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCcC
Confidence 66 59999999999999999998 99999999999999888886443
No 36
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=99.83 E-value=6.1e-19 Score=160.96 Aligned_cols=159 Identities=16% Similarity=0.078 Sum_probs=123.4
Q ss_pred cCEEE-EeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhC
Q 021714 87 YTHLL-TGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (308)
Q Consensus 87 ~~~v~-~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g 165 (308)
.+++. .|+++.......+.++++.++++ +.++++||+... ...+.+ .++++|+++||..|++.|+|
T Consensus 127 ~~~v~~~g~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~----------~~~~~~-~~~~~dil~~n~~E~~~l~g 193 (309)
T TIGR01231 127 VEVVAISGSLPKGLPQDYYAQIIERCQNK--GVPVVLDCSGAT----------LQTVLE-NPAKPTVIKPNIEELSQLLN 193 (309)
T ss_pred CCEEEEECCCCCCcCHHHHHHHHHHHHhC--CCeEEEECChHH----------HHHHHh-ccCCCeEEcCCHHHHHHHhC
Confidence 66544 47766544456777888888876 889999995321 122332 46789999999999999999
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHHH
Q 021714 166 FRIG-SEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWS 243 (308)
Q Consensus 166 ~~~~-~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~l 243 (308)
.+.. +.+++.++++.+.+.|++.|++|.|. +|+++... ++.++.+.+.++ +||+||||+|.|+|++++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~g~~~vivT~G~-~G~~~~~~---------~~~~~~~~~~v~vvDttGAGDaF~agfl~~l 263 (309)
T TIGR01231 194 QELTEDLESLKQALSQPLFSGIEWIIVSLGA-QGAFAKHG---------HTFYKVNIPTISVVNPVGSGDSTVAGITSAL 263 (309)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEccCC-CceEEEeC---------CeeEEeeCCccCcCCCcchHHHHHHHHHHHH
Confidence 7543 45667777777778899999999995 89887643 345666666666 599999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHH
Q 021714 244 NKYRDNLDIAAELAVSSLQALLQRTV 269 (308)
Q Consensus 244 ~~~g~~~~~A~~~A~a~~~~~i~~t~ 269 (308)
++ |+++++|+++|+++++.++.++.
T Consensus 264 ~~-g~~~~~a~~~a~a~aa~~~~~~~ 288 (309)
T TIGR01231 264 LN-HESDHDLLKKANTLGMLNAQEAQ 288 (309)
T ss_pred Hc-CCCHHHHHHHHHHHHHHHhcCcc
Confidence 98 99999999999998888876444
No 37
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=99.82 E-value=9.2e-19 Score=159.24 Aligned_cols=174 Identities=22% Similarity=0.219 Sum_probs=130.4
Q ss_pred eCCHHHHHHHHHHHHhCCCcccCEEEE-eccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHH
Q 021714 66 VLNGQQLCDLIEGLEANNLLYYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYRE 144 (308)
Q Consensus 66 ~~~~~~~~~~l~~l~~~~~~~~~~v~~-G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~ 144 (308)
.++.+++..+++.+.+... .++++.+ |++......+.+..+++.++++ +.++++||... .+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~-~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~--g~~v~~D~~~~-------------~~~~ 171 (303)
T TIGR03168 108 EISEEELEQLLEKLRELLA-SGDIVVISGSLPPGVPPDFYAQLIAIARKR--GAKVILDTSGE-------------ALRE 171 (303)
T ss_pred CCCHHHHHHHHHHHHHhcc-CCCEEEEeCCCCCCCCHHHHHHHHHHHHHC--CCEEEEECCcH-------------HHHH
Confidence 3555566655554333111 3676555 6654333456677888888776 78999999411 1222
Q ss_pred hhcccceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEeccc
Q 021714 145 KVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKI 224 (308)
Q Consensus 145 ~ll~~~diitpN~~E~~~L~g~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (308)
.+..++|+++||+.|+..|+|.+..+.+++.++++.+.++|++.|+||.|. +|.+++.. ++.++++.++.
T Consensus 172 ~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vviT~g~-~G~~~~~~---------~~~~~~~~~~~ 241 (303)
T TIGR03168 172 ALAAKPFLIKPNHEELEELFGRELKTEEEIIEAARELLDRGAENVLVSLGA-DGALLVTK---------EGALKATPPKV 241 (303)
T ss_pred HHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEeecC-CCcEEEeC---------CceEEeeCCcc
Confidence 244579999999999999999877777788888888988999999999995 89887653 44566666666
Q ss_pred C-CCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Q 021714 225 P-AYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQ 266 (308)
Q Consensus 225 ~-~~t~GaGD~f~a~l~~~l~~~g~~~~~A~~~A~a~~~~~i~ 266 (308)
+ +|++||||+|+|+|++++.+ |.++++|+++|+++++..+.
T Consensus 242 ~~vDttGAGD~F~a~~~~~l~~-g~~i~~a~~~A~~~aa~~~~ 283 (303)
T TIGR03168 242 EVVNTVGAGDSMVAGFLAGLAR-GLSLEEALRFAVAAGSAAAF 283 (303)
T ss_pred eeecCcCHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhc
Confidence 6 59999999999999999998 99999999999998877775
No 38
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=99.82 E-value=3.8e-19 Score=160.74 Aligned_cols=163 Identities=22% Similarity=0.231 Sum_probs=123.2
Q ss_pred ccCEEEE-eccCCHhH--HHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHH
Q 021714 86 YYTHLLT-GYIGSVSF--LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQ 162 (308)
Q Consensus 86 ~~~~v~~-G~l~~~~~--~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~ 162 (308)
+.+++.+ |+.+.... .+.+.++++.+++. +.++++||+++.. .+..+...+.++ .+++++|+++||..|++.
T Consensus 124 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~D~~~~~~--~~~~~~~~~~~~-~~~~~~dil~~n~~E~~~ 198 (294)
T cd01166 124 GADHLHLSGITLALSESAREALLEALEAAKAR--GVTVSFDLNYRPK--LWSAEEAREALE-ELLPYVDIVLPSEEEAEA 198 (294)
T ss_pred CCCEEEEcCcchhhCHHHHHHHHHHHHHHHHc--CCEEEECCCCcch--hcChHHHHHHHH-HHHHhCCEEEcCHHHHHH
Confidence 3676554 56553222 47788888888876 7899999976421 122222334444 489999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHH
Q 021714 163 LTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLG 241 (308)
Q Consensus 163 L~g~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~ 241 (308)
|+|.+. .+++.+.++.+ ++|++.|+||+|+ +|.++... ++.++++.++.+ +|++||||+|+|+|++
T Consensus 199 l~~~~~--~~~~~~~~~~l-~~g~~~viit~G~-~G~~~~~~---------~~~~~~~~~~~~~vdt~GAGD~f~a~~~~ 265 (294)
T cd01166 199 LLGDED--PTDAAERALAL-ALGVKAVVVKLGA-EGALVYTG---------GGRVFVPAYPVEVVDTTGAGDAFAAGFLA 265 (294)
T ss_pred HhCCCC--chhHHHHHHhh-cCCccEEEEEEcC-CceEEEEC---------CceEEeCCCCcccccCCCchHHHHHHHHH
Confidence 998753 34566666666 7899999999995 88877643 345667666655 5999999999999999
Q ss_pred HHccCCCCHHHHHHHHHHHHHHHHHH
Q 021714 242 WSNKYRDNLDIAAELAVSSLQALLQR 267 (308)
Q Consensus 242 ~l~~~g~~~~~A~~~A~a~~~~~i~~ 267 (308)
+|++ |.++++|+++|+++++..+++
T Consensus 266 ~l~~-g~~~~~a~~~a~~~aa~~i~~ 290 (294)
T cd01166 266 GLLE-GWDLEEALRFANAAAALVVTR 290 (294)
T ss_pred HHHc-CCCHHHHHHHHHHHHHHHHhc
Confidence 9998 999999999999998888763
No 39
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=99.81 E-value=1.1e-18 Score=158.69 Aligned_cols=155 Identities=22% Similarity=0.183 Sum_probs=122.1
Q ss_pred ccCEEEE-eccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhh
Q 021714 86 YYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (308)
Q Consensus 86 ~~~~v~~-G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~ 164 (308)
.++.+.+ |+.+.....+.+.++++.+++. +.++++||.... + .+++++|+++||..|++.++
T Consensus 134 ~~~~v~~s~~~~~~~~~~~~~~~~~~a~~~--~~~v~~D~~~~~----~-----------~~~~~~d~l~~n~~E~~~l~ 196 (304)
T cd01172 134 EADVVILSDYGKGVLTPRVIEALIAAAREL--GIPVLVDPKGRD----Y-----------SKYRGATLLTPNEKEAREAL 196 (304)
T ss_pred cCCEEEEEcCCCCccCHHHHHHHHHHHHhc--CCCEEEeCCCcc----h-----------hhccCCcEeCCCHHHHHHHh
Confidence 3776665 6654333346677788888776 788999994321 1 26789999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHH-HcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHH
Q 021714 165 GFRIGSEADGREACKILH-AAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGW 242 (308)
Q Consensus 165 g~~~~~~~d~~~~~~~l~-~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~ 242 (308)
+.+..+.+++.++++.+. +.|++.|+||.|. +|+++.... ++.++++.++++ +||+||||+|.|+|+++
T Consensus 197 ~~~~~~~~~~~~~~~~l~~~~g~~~vvvt~G~-~G~~~~~~~--------~~~~~~~~~~~~vvdttGAGDaf~ag~i~~ 267 (304)
T cd01172 197 GDEINDDDELEAAGEKLLELLNLEALLVTLGE-EGMTLFERD--------GEVQHIPALAKEVYDVTGAGDTVIATLALA 267 (304)
T ss_pred CCCCCChHHHHHHHHHHHHHhCCCeEEEEcCC-CccEEEcCC--------CcEEEecCCCCCCCCCcCccHHHHHHHHHH
Confidence 987767778888888876 4689999999995 899887520 456677766666 59999999999999999
Q ss_pred HccCCCCHHHHHHHHHHHHHHHHHH
Q 021714 243 SNKYRDNLDIAAELAVSSLQALLQR 267 (308)
Q Consensus 243 l~~~g~~~~~A~~~A~a~~~~~i~~ 267 (308)
|.+ |+++++|+++|+++++.++..
T Consensus 268 l~~-g~~~~~al~~a~a~Aa~~~~~ 291 (304)
T cd01172 268 LAA-GADLEEAAFLANAAAGVVVGK 291 (304)
T ss_pred HHc-CCCHHHHHHHHHHHhheeeec
Confidence 998 999999999999988877763
No 40
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=99.80 E-value=9.9e-19 Score=167.98 Aligned_cols=161 Identities=20% Similarity=0.124 Sum_probs=122.5
Q ss_pred ccCEEE-EeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCC-hhhHHHHHHhhcccceEEcCCHHHHHHh
Q 021714 86 YYTHLL-TGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVP-SELVSVYREKVVPVASMLTPNQFEAEQL 163 (308)
Q Consensus 86 ~~~~v~-~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~-~~~~~~l~~~ll~~~diitpN~~E~~~L 163 (308)
.++++. .|+.+.+...+.+.++++.++++ ++++++||+++.. .+|.. ++..+.+++ +++.+|+++||+.|++.|
T Consensus 224 ~adiv~lsg~~~~~~~~~~~~~~~~~Ak~~--g~~V~~Dp~~~~~-~~~~~~~~~~~~l~~-~L~~~Dil~~Ne~Ea~~l 299 (470)
T PLN02341 224 QSKALFCNGYVFDELSPSAIASAVDYAIDV--GTAVFFDPGPRGK-SLLVGTPDERRALEH-LLRMSDVLLLTSEEAEAL 299 (470)
T ss_pred cCCEEEEeceeCCcCCHHHHHHHHHHHHHc--CCEEEEeCCCccc-ccccChHHHHHHHHH-HHhhCCEEEecHHHHHHH
Confidence 366554 56655444566778888888876 8899999976521 12222 222334554 889999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcC--CCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHH
Q 021714 164 TGFRIGSEADGREACKILHAAG--PAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLL 240 (308)
Q Consensus 164 ~g~~~~~~~d~~~~~~~l~~~g--~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~ 240 (308)
+|.+ +..++++.|.+.| .+.|+||.|. +|++++.. ++.++++.++++ +||+||||+|.|+|+
T Consensus 300 ~g~~-----~~~~a~~~l~~~g~~~k~VVVTlG~-~Ga~~~~~---------~~~~~vpa~~v~vVDTtGAGDaF~Agfl 364 (470)
T PLN02341 300 TGIR-----NPILAGQELLRPGIRTKWVVVKMGS-KGSILVTR---------SSVSCAPAFKVNVVDTVGCGDSFAAAIA 364 (470)
T ss_pred hCCC-----CHHHHHHHHHhcCCCCCEEEEeeCC-CCeEEEEC---------CeeEEeCCCCcCCCCCcCccHHHHHHHH
Confidence 9963 4556777777766 4899999995 89988754 445667666666 599999999999999
Q ss_pred HHHccCCCCHHHHHHHHHHHHHHHHH
Q 021714 241 GWSNKYRDNLDIAAELAVSSLQALLQ 266 (308)
Q Consensus 241 ~~l~~~g~~~~~A~~~A~a~~~~~i~ 266 (308)
+++.+ |+++++|+++|+++++.++.
T Consensus 365 ~gll~-G~~l~eal~~A~a~aA~~v~ 389 (470)
T PLN02341 365 LGYIH-NLPLVNTLTLANAVGAATAM 389 (470)
T ss_pred HHHHc-CCCHHHHHHHHHHHHHHHHc
Confidence 99998 99999999999998877665
No 41
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.80 E-value=4.8e-18 Score=155.32 Aligned_cols=153 Identities=21% Similarity=0.191 Sum_probs=117.7
Q ss_pred ccCEEEE-eccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhh
Q 021714 86 YYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (308)
Q Consensus 86 ~~~~v~~-G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~ 164 (308)
.++++.+ |+.......+.+.++++.+++. ++++++||+.. . + ..++.+|+++||..|++.|+
T Consensus 143 ~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~----~---------~--~~~~~~d~l~~n~~E~~~l~ 205 (315)
T TIGR02198 143 SADAVVLSDYAKGVLTPRVVQEVIAAARKH--GKPVLVDPKGK----D---------F--SRYRGATLITPNRKEAEAAV 205 (315)
T ss_pred hCCEEEEecCCCCccCHHHHHHHHHHHHhc--CCCEEEeCCCc----c---------h--hhcCCCcEECCCHHHHHHHh
Confidence 3776665 5433333345677888888876 78999999532 1 1 25778999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHH-HcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHH
Q 021714 165 GFRIGSEADGREACKILH-AAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGW 242 (308)
Q Consensus 165 g~~~~~~~d~~~~~~~l~-~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~ 242 (308)
+ ...+.++..++++.+. ++|++.|+||.|. +|+++.... +..++++.++++ +||+||||+|.|+|+++
T Consensus 206 ~-~~~~~~~~~~~~~~l~~~~g~~~vivT~G~-~G~~~~~~~--------~~~~~~~~~~~~vvdt~GAGDaf~ag~~~~ 275 (315)
T TIGR02198 206 G-ACDTEAELVQAAEKLLEELDLEALLVTRSE-KGMTLFTRE--------GEPIHIPAQAREVYDVTGAGDTVIATLALA 275 (315)
T ss_pred C-CCCCHHHHHHHHHHHHHHcCCCEEEEEcCC-CCeEEEecC--------CCeEEecCCCCCCCCCcCccHHHHHHHHHH
Confidence 9 3345567778887776 5789999999995 898776420 245556555555 59999999999999999
Q ss_pred HccCCCCHHHHHHHHHHHHHHHHH
Q 021714 243 SNKYRDNLDIAAELAVSSLQALLQ 266 (308)
Q Consensus 243 l~~~g~~~~~A~~~A~a~~~~~i~ 266 (308)
+.+ |+++++|+++|+++++.+++
T Consensus 276 l~~-g~~~~~al~~A~~~aa~~~~ 298 (315)
T TIGR02198 276 LAA-GASLEEACRLANAAAGVVVG 298 (315)
T ss_pred HHc-CCCHHHHHHHHHHHhhhhhc
Confidence 998 99999999999998888776
No 42
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=99.80 E-value=3.5e-18 Score=154.56 Aligned_cols=169 Identities=20% Similarity=0.213 Sum_probs=126.6
Q ss_pred eCCHHHHHHHHHHHHhCCCcccCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHh
Q 021714 66 VLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREK 145 (308)
Q Consensus 66 ~~~~~~~~~~l~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ 145 (308)
.++.++++.+.+.+. ..+.+.+.. ....+.+.++++.++++ +.++++||..... .+...
T Consensus 109 ~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~v~~D~~~~~~-----------~~~~~ 167 (293)
T TIGR02152 109 ELTPEDIDAAEALIA-----ESDIVLLQL---EIPLETVLEAAKIAKKH--GVKVILNPAPAIK-----------DLDDE 167 (293)
T ss_pred cCCHHHHHHHHhhhc-----cCCEEEEec---CCCHHHHHHHHHHHHHc--CCEEEEECCcCcc-----------cchHH
Confidence 355556665544443 366555432 22244566778888776 7899999953210 01123
Q ss_pred hcccceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC
Q 021714 146 VVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP 225 (308)
Q Consensus 146 ll~~~diitpN~~E~~~L~g~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (308)
+++++|+++||.+|++.|++....+.+++.++++.+.++|++.|++|.|. +|.+++.. ++.++++.++++
T Consensus 168 ~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~-~g~~~~~~---------~~~~~~~~~~~~ 237 (293)
T TIGR02152 168 LLSLVDIITPNETEAEILTGIEVTDEEDAEKAAEKLLEKGVKNVIITLGS-KGALLVSK---------DESKLIPAFKVK 237 (293)
T ss_pred HHhcCCEEccCHHHHHHHhCCCCCCcchHHHHHHHHHHcCCCeEEEEeCC-CceEEEeC---------CceeEccCCCCc
Confidence 78899999999999999999876666678888888888899999999995 88877643 345556555555
Q ss_pred -CCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Q 021714 226 -AYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQ 266 (308)
Q Consensus 226 -~~t~GaGD~f~a~l~~~l~~~g~~~~~A~~~A~a~~~~~i~ 266 (308)
+|++||||+|+|+|++++.+ |.++++|+++|+++++.++.
T Consensus 238 ~vdt~GAGDaf~Ag~l~~l~~-g~~~~~al~~a~~~Aa~~~~ 278 (293)
T TIGR02152 238 AVDTTAAGDTFNGAFAVALAE-GKSLEDAIRFANAAAAISVT 278 (293)
T ss_pred eeCCCCcHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHc
Confidence 59999999999999999998 99999999999998887776
No 43
>PTZ00247 adenosine kinase; Provisional
Probab=99.79 E-value=2.4e-18 Score=159.44 Aligned_cols=161 Identities=18% Similarity=0.209 Sum_probs=115.2
Q ss_pred cCEEEE-eccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhC
Q 021714 87 YTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (308)
Q Consensus 87 ~~~v~~-G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g 165 (308)
.+.+.+ |+... ...+.+.++++.+|++ ++++++||... +......+.+++ +++++|+++||+.|++.|+|
T Consensus 160 ~~~v~~~g~~~~-~~~~~~~~~~~~a~~~--g~~v~~d~~~~-----~~~~~~~~~~~~-~l~~~Dil~~N~~Ea~~l~g 230 (345)
T PTZ00247 160 AQLYYLEGFFLT-VSPNNVLQVAKHARES--GKLFCLNLSAP-----FISQFFFERLLQ-VLPYVDILFGNEEEAKTFAK 230 (345)
T ss_pred CCEEEEEEEEec-ccHHHHHHHHHHHHHc--CCEEEEECCcH-----HHHHHHHHHHHH-HHhhCCEEEeCHHHHHHHhh
Confidence 565554 54322 1346677888888876 88999997311 111112233454 88999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHH------cCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEeccc---C-CCCCCccHHH
Q 021714 166 FRIGSEADGREACKILHA------AGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKI---P-AYFTGTGDLM 235 (308)
Q Consensus 166 ~~~~~~~d~~~~~~~l~~------~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~t~GaGD~f 235 (308)
....+.++..++++.+.+ .+++.|+||.|. +|+++... ++.++++.+++ + +||+||||+|
T Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvT~G~-~G~~~~~~---------~~~~~~~~~~v~~~~vVDTtGAGDaF 300 (345)
T PTZ00247 231 AMKWDTEDLKEIAARIAMLPKYSGTRPRLVVFTQGP-EPTLIATK---------DGVTSVPVPPLDQEKIVDTNGAGDAF 300 (345)
T ss_pred ccCCCccCHHHHHHHHHhccccccCCCCEEEEecCC-CceEEEEC---------CEEEEEeccccCCCCccCCCChHHHH
Confidence 422112345555665543 257899999995 89988754 34555666665 2 6999999999
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHHHHHH
Q 021714 236 TALLLGWSNKYRDNLDIAAELAVSSLQALLQR 267 (308)
Q Consensus 236 ~a~l~~~l~~~g~~~~~A~~~A~a~~~~~i~~ 267 (308)
.|+|++++.+ |+++++|+++|+++++.++.+
T Consensus 301 ~agfl~~l~~-g~~~~~al~~a~~aAa~~v~~ 331 (345)
T PTZ00247 301 VGGFLAQYAN-GKDIDRCVEAGHYSAQVIIQH 331 (345)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhc
Confidence 9999999998 999999999999988888764
No 44
>PLN02323 probable fructokinase
Probab=99.78 E-value=1.3e-17 Score=153.53 Aligned_cols=161 Identities=16% Similarity=0.080 Sum_probs=116.6
Q ss_pred cCEEEEeccC--CHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCC-hhhHHHHHHhhcccceEEcCCHHHHHHh
Q 021714 87 YTHLLTGYIG--SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVP-SELVSVYREKVVPVASMLTPNQFEAEQL 163 (308)
Q Consensus 87 ~~~v~~G~l~--~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~-~~~~~~l~~~ll~~~diitpN~~E~~~L 163 (308)
.+.+..+.+. +......+.++++.+++. +.++++||.++. ..|.+ +...+.+.+ +++.+|+++||+.|++.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~--~~~~~~~~~~~~~~~-~l~~~dil~~n~~E~~~l 211 (330)
T PLN02323 137 AKIFHYGSISLITEPCRSAHLAAMKIAKEA--GALLSYDPNLRL--PLWPSAEAAREGIMS-IWDEADIIKVSDEEVEFL 211 (330)
T ss_pred CCEEEEechhccCchHHHHHHHHHHHHHHc--CCEEEEcCCCCh--hhccCHHHHHHHHHH-HHHhCCEEEcCHHHHHHH
Confidence 5655555432 233345566788888876 889999997652 23322 223344444 888999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHH
Q 021714 164 TGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGW 242 (308)
Q Consensus 164 ~g~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~ 242 (308)
+|....+.+++ . +++..|++.|++|.|. +|+++... ++.++++.++++ +||+||||+|.|+|+++
T Consensus 212 ~g~~~~~~~~~---~-~~~~~g~~~vvvt~G~-~G~~~~~~---------~~~~~~~~~~v~vvDttGAGDaf~Agfl~~ 277 (330)
T PLN02323 212 TGGDDPDDDTV---V-KLWHPNLKLLLVTEGE-EGCRYYTK---------DFKGRVEGFKVKAVDTTGAGDAFVGGLLSQ 277 (330)
T ss_pred hCCCCccHHHH---H-HHHhcCCCEEEEecCC-CceEEEeC---------CCceEeCCccCCCCCCCCcHHHHHHHHHHH
Confidence 99754333222 2 4445789999999995 89887753 334455555555 59999999999999999
Q ss_pred HccCCCC-------HHHHHHHHHHHHHHHHHH
Q 021714 243 SNKYRDN-------LDIAAELAVSSLQALLQR 267 (308)
Q Consensus 243 l~~~g~~-------~~~A~~~A~a~~~~~i~~ 267 (308)
+++ |++ +++|+++|+++++.++.+
T Consensus 278 l~~-g~~~~~~~~~l~~al~~a~a~Aa~~v~~ 308 (330)
T PLN02323 278 LAK-DLSLLEDEERLREALRFANACGAITTTE 308 (330)
T ss_pred HHc-CCccccchHHHHHHHHHHHHHHHHHHhc
Confidence 998 876 899999999988888864
No 45
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=99.78 E-value=2.9e-18 Score=156.63 Aligned_cols=158 Identities=22% Similarity=0.213 Sum_probs=118.5
Q ss_pred cCEEEE-eccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhC
Q 021714 87 YTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (308)
Q Consensus 87 ~~~v~~-G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g 165 (308)
++.+.+ |+..... .+.+..+++.++++ +.++++||... +..+...+.+++ +++++|+++||+.|++.|+|
T Consensus 146 ~~~v~~~~~~~~~~-~~~~~~~~~~a~~~--g~~v~~d~~~~-----~~~~~~~~~~~~-~l~~~d~l~~n~~E~~~l~~ 216 (312)
T cd01168 146 AKYLYLEGYLLTVP-PEAILLAAEHAKEN--GVKIALNLSAP-----FIVQRFKEALLE-LLPYVDILFGNEEEAEALAE 216 (312)
T ss_pred CCEEEEEEEecCCC-HHHHHHHHHHHHHc--CCEEEEeCCcH-----HHHHHHHHHHHH-HHhhCCEEEeCHHHHHHHhC
Confidence 665554 5533211 26677788888876 78999999521 111122334554 78999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecc-cC-CCCCCccHHHHHHHHHHH
Q 021714 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPK-IP-AYFTGTGDLMTALLLGWS 243 (308)
Q Consensus 166 ~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~t~GaGD~f~a~l~~~l 243 (308)
.+. ++..++++.+++.|++.|++|.|. +|.+++.. ++.++++.++ ++ +||+||||+|.|+|++++
T Consensus 217 ~~~---~~~~~~a~~l~~~g~~~vvvt~G~-~G~~~~~~---------~~~~~~~~~~~~~vvDttGAGDaf~ag~l~~l 283 (312)
T cd01168 217 AET---TDDLEAALKLLALRCRIVVITQGA-KGAVVVEG---------GEVYPVPAIPVEKIVDTNGAGDAFAGGFLYGL 283 (312)
T ss_pred CCC---CChHHHHHHHHhcCCCEEEEecCC-CCeEEEEC---------CEEEeCCCCCCCCcccCCchHHHHHHHHHHHH
Confidence 632 244567888888899999999995 89888753 4455666555 45 599999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHH
Q 021714 244 NKYRDNLDIAAELAVSSLQALLQR 267 (308)
Q Consensus 244 ~~~g~~~~~A~~~A~a~~~~~i~~ 267 (308)
++ |+++++|+++|+++++.++.+
T Consensus 284 ~~-g~~~~~a~~~a~~~Aa~~v~~ 306 (312)
T cd01168 284 VQ-GEPLEECIRLGSYAAAEVIQQ 306 (312)
T ss_pred Hc-CCCHHHHHHHHHHHHHHHHhc
Confidence 98 999999999999998888864
No 46
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=99.78 E-value=5.6e-18 Score=153.28 Aligned_cols=160 Identities=22% Similarity=0.168 Sum_probs=121.0
Q ss_pred ccCEEEEeccC--CHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCC-hhhHHHHHHhhcccceEEcCCHHHHHH
Q 021714 86 YYTHLLTGYIG--SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVP-SELVSVYREKVVPVASMLTPNQFEAEQ 162 (308)
Q Consensus 86 ~~~~v~~G~l~--~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~-~~~~~~l~~~ll~~~diitpN~~E~~~ 162 (308)
+.++++++..+ +....+.+.++++.+++. +.++++||..+. ..|.. ....+.+++ +++++|+++||+.|++.
T Consensus 120 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~v~~d~~~~~--~~~~~~~~~~~~~~~-~l~~~d~l~~n~~E~~~ 194 (295)
T cd01167 120 EADILHFGSIALASEPSRSALLELLEAAKKA--GVLISFDPNLRP--PLWRDEEEARERIAE-LLELADIVKLSDEELEL 194 (295)
T ss_pred cCCEEEEechhhccchHHHHHHHHHHHHHHc--CCEEEEcCCCCh--hhcCCHHHHHHHHHH-HHHhCCEEEecHHHHHH
Confidence 36777776532 233346677888888876 789999997542 12322 122334454 88999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHH
Q 021714 163 LTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLG 241 (308)
Q Consensus 163 L~g~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~ 241 (308)
|+|.+. ..++++.+.++|++.+++|.|. +|.+++.. ++.++++.++.+ +||+||||+|.|+|++
T Consensus 195 l~~~~~-----~~~~~~~l~~~g~~~vvvt~G~-~G~~~~~~---------~~~~~~~a~~~~vvDttGAGD~f~a~~~~ 259 (295)
T cd01167 195 LFGEED-----PEEIAALLLLFGLKLVLVTRGA-DGALLYTK---------GGVGEVPGIPVEVVDTTGAGDAFVAGLLA 259 (295)
T ss_pred HhCCCC-----HHHHHHHHhhcCCCEEEEecCC-cceEEEEC---------CcceeeCCCCcceeeCCCccHHHHHHHHH
Confidence 998642 2345567778899999999995 89887653 345667666665 5999999999999999
Q ss_pred HHccCCC-------CHHHHHHHHHHHHHHHHH
Q 021714 242 WSNKYRD-------NLDIAAELAVSSLQALLQ 266 (308)
Q Consensus 242 ~l~~~g~-------~~~~A~~~A~a~~~~~i~ 266 (308)
+|++ |. ++++|+++|+++++.+++
T Consensus 260 ~l~~-g~~~~~~~~~~~~a~~~a~~~aa~~~~ 290 (295)
T cd01167 260 QLLS-RGLLALDEDELAEALRFANAVGALTCT 290 (295)
T ss_pred HHHh-CCcccccHHHHHHHHHHHHHhhHHHhc
Confidence 9998 99 999999999998888775
No 47
>PRK09850 pseudouridine kinase; Provisional
Probab=99.78 E-value=1.7e-17 Score=151.69 Aligned_cols=130 Identities=24% Similarity=0.238 Sum_probs=104.3
Q ss_pred CceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeec
Q 021714 117 NLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINI 196 (308)
Q Consensus 117 ~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~ 196 (308)
++++++||... |. ...+++ +++++|+++||..|++.|+|....+.+++.++++.|.+.|++.|+||.|.
T Consensus 158 g~~v~~D~~~~-----~~----~~~~~~-~l~~~dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~- 226 (313)
T PRK09850 158 NVPVFVDPVSA-----WK----CVKVRD-RLNQIHTLKPNRLEAETLSGIALSGREDVAKVAAWFHQHGLNRLVLSMGG- 226 (313)
T ss_pred CCCEEEEcCCH-----HH----HHHHHh-hhccceEEccCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCC-
Confidence 67899999532 10 012444 78899999999999999999877667788888888888999999999995
Q ss_pred CCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Q 021714 197 DGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQ 266 (308)
Q Consensus 197 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~l~~~g~~~~~A~~~A~a~~~~~i~ 266 (308)
+|+++.... ++..+++.++++ +||+||||+|.|+|++++.+ |+++++|+++|+++++.+++
T Consensus 227 ~G~~~~~~~--------~~~~~~~~~~~~vvDttGAGDaF~agfi~~l~~-g~~~~eal~~a~a~aa~~~~ 288 (313)
T PRK09850 227 DGVYYSDIS--------GESGWSAPIKTNVINVTGAGDAMMAGLASCWVD-GMPFAESVRFAQGCSSMALS 288 (313)
T ss_pred ceEEEEcCC--------CCeEecCCCCcccccCCCcHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhc
Confidence 898876420 233344444555 59999999999999999998 99999999999999888886
No 48
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=99.77 E-value=5.9e-17 Score=142.65 Aligned_cols=162 Identities=21% Similarity=0.143 Sum_probs=116.5
Q ss_pred cCEEEE--eccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcc--cceEEcCCHHHHHH
Q 021714 87 YTHLLT--GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVP--VASMLTPNQFEAEQ 162 (308)
Q Consensus 87 ~~~v~~--G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~--~~diitpN~~E~~~ 162 (308)
.|++++ |++. +...+.+...++.+++. +.++|+||+...... ...+.+++ ++. .+++||||..|++.
T Consensus 50 ~d~vvi~~G~l~-~~~~~~i~~~~~~~~~~--~~pvVlDp~~~~~~~-----~~~~~~~~-ll~~~~~~ilTPN~~Ea~~ 120 (242)
T cd01170 50 AGALVINIGTLT-SEQIEAMLKAGKAANQL--GKPVVLDPVGVGATS-----FRTEVAKE-LLAEGQPTVIRGNASEIAA 120 (242)
T ss_pred cCcEEEeCCCCC-hHHHHHHHHHHHHHHhc--CCCEEEcccccCcch-----hHHHHHHH-HHhcCCCeEEcCCHHHHHH
Confidence 454444 5554 45566677777667765 789999997653110 11122333 444 49999999999999
Q ss_pred hhCCCCCC---------HHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCcc
Q 021714 163 LTGFRIGS---------EADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTG 232 (308)
Q Consensus 163 L~g~~~~~---------~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaG 232 (308)
|+|.+..+ .+++.+++++|.+++...|++|+++ .+++.. ++.++++..... .+++|+|
T Consensus 121 L~g~~~~~~~~~~~~~~~~~~~~aa~~l~~~~~~~VllkG~~---d~l~~~---------~~~~~~~~~~~~~~~v~GtG 188 (242)
T cd01170 121 LAGLTGLGKGVDSSSSDEEDALELAKALARKYGAVVVVTGEV---DYITDG---------ERVVVVKNGHPLLTKITGTG 188 (242)
T ss_pred HhCCCCCcCcccCCCcchHHHHHHHHHHHHHhCCEEEEECCC---cEEEEC---------CEEEEEeCCCccccCCCchH
Confidence 99976532 5688899999987766689999763 354432 345556532222 3569999
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 021714 233 DLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQRTVN 270 (308)
Q Consensus 233 D~f~a~l~~~l~~~g~~~~~A~~~A~a~~~~~i~~t~~ 270 (308)
|+|+|+++++|++ |.++.+|+..|..+.+.+++...+
T Consensus 189 dtLa~aiAa~LA~-g~~~~~A~~~A~~~~~~a~~~a~~ 225 (242)
T cd01170 189 CLLGAVIAAFLAV-GDDPLEAAVSAVLVYGIAGELAAE 225 (242)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998 999999999999999999987765
No 49
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=99.77 E-value=1.4e-17 Score=151.51 Aligned_cols=160 Identities=18% Similarity=0.147 Sum_probs=120.0
Q ss_pred cCEEEEecc--CCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCCh-hhHHHHHHhhcccceEEcCCHHHHHHh
Q 021714 87 YTHLLTGYI--GSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPS-ELVSVYREKVVPVASMLTPNQFEAEQL 163 (308)
Q Consensus 87 ~~~v~~G~l--~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~-~~~~~l~~~ll~~~diitpN~~E~~~L 163 (308)
.+.+.++.+ ........+.++++.++++ +.++++||+.+. ..|... +..+.+.+ +++++|+++||+.|+..|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~D~~~~~--~~~~~~~~~~~~~~~-~l~~~dil~~n~~e~~~l 194 (304)
T PRK09434 120 GEWLHLCSIALSAEPSRSTTFEAMRRIKAA--GGFVSFDPNLRE--DLWQDEAELRECLRQ-ALALADVVKLSEEELCFL 194 (304)
T ss_pred CCEEEEccccccCchHHHHHHHHHHHHHHc--CCEEEECCCCCh--hhccCHHHHHHHHHH-HHHhcceeeCCHHHHHHH
Confidence 565555432 1233345666888888876 788999998763 234332 33344444 889999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHH-cCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHH
Q 021714 164 TGFRIGSEADGREACKILHA-AGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLG 241 (308)
Q Consensus 164 ~g~~~~~~~d~~~~~~~l~~-~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~ 241 (308)
+|.+ +..++++.+.+ .|++.|+||.|. +|++++.. ++.++++.++++ +||+||||+|.|+|++
T Consensus 195 ~g~~-----~~~~~~~~l~~~~g~~~vvvt~G~-~G~~~~~~---------~~~~~~~~~~~~~vDttGAGD~f~ag~~~ 259 (304)
T PRK09434 195 SGTS-----QLEDAIYALADRYPIALLLVTLGA-EGVLVHTR---------GQVQHFPAPSVDPVDTTGAGDAFVAGLLA 259 (304)
T ss_pred hCCC-----CHHHHHHHHHhhcCCcEEEEEecC-CceEEEeC---------CceeEeCCCCCCCCcCCCchHHHHHHHHH
Confidence 9863 45567777775 688999999995 89887653 455666665665 5999999999999999
Q ss_pred HHccCCC------CHHHHHHHHHHHHHHHHHH
Q 021714 242 WSNKYRD------NLDIAAELAVSSLQALLQR 267 (308)
Q Consensus 242 ~l~~~g~------~~~~A~~~A~a~~~~~i~~ 267 (308)
++++ |+ ++++|+++|+++++.++..
T Consensus 260 ~l~~-g~~~~~~~~~~~a~~~a~~~Aa~~v~~ 290 (304)
T PRK09434 260 GLSQ-AGLWTDEAELAEIIAQAQACGALATTA 290 (304)
T ss_pred HHHc-CCCccchHHHHHHHHHHHHHHHHHHcc
Confidence 9998 86 8999999999988877763
No 50
>PRK09954 putative kinase; Provisional
Probab=99.76 E-value=3.5e-17 Score=152.72 Aligned_cols=129 Identities=21% Similarity=0.146 Sum_probs=102.7
Q ss_pred CceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeec
Q 021714 117 NLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINI 196 (308)
Q Consensus 117 ~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~ 196 (308)
++++++||.... ....+++ +++++|+++||+.|++.|+|....+.++..++++.+.++|++.|+||.|.
T Consensus 211 ~~~v~~D~~~~~---------~~~~~~~-~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~Vvvt~G~- 279 (362)
T PRK09954 211 EIPVFVDTVSEF---------KAGKIKH-WLAHIHTLKPTQPELEILWGQAITSDADRNAAVNALHQQGVQQIFVYLPD- 279 (362)
T ss_pred CCcEEEECCCHH---------Hhhhhhh-hhccccEEecCHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCC-
Confidence 678999985210 0112343 88999999999999999999877666677888888989999999999995
Q ss_pred CCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHH
Q 021714 197 DGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALL 265 (308)
Q Consensus 197 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~l~~~g~~~~~A~~~A~a~~~~~i 265 (308)
+|+++.... ++.++++.+.++ +||+||||+|.|+|++++.+ |+++++|+++|+++++.++
T Consensus 280 ~G~~~~~~~--------~~~~~~~~~~v~vvDttGAGDaF~Ag~l~~l~~-g~~~~eal~~a~a~Aal~~ 340 (362)
T PRK09954 280 ESVFCSEKD--------GEQFLLTAPAHTTVDSFGADDGFMAGLVYSFLE-GYSFRDSARFAMACAAISR 340 (362)
T ss_pred ccEEEEeCC--------CceEeccCCCcccccccchHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHh
Confidence 888765430 234455555555 59999999999999999998 9999999999999887764
No 51
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=99.76 E-value=3.8e-17 Score=144.47 Aligned_cols=162 Identities=15% Similarity=0.095 Sum_probs=119.4
Q ss_pred cCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEcccccc-CCCcCCChhhHHHHHHhhcc--cceEEcCCHHHHHHh
Q 021714 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVP--VASMLTPNQFEAEQL 163 (308)
Q Consensus 87 ~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~-~g~~~~~~~~~~~l~~~ll~--~~diitpN~~E~~~L 163 (308)
.-+|++|++.+ +..+.+...++.+++. +.|+|+||++.. +|.. .+..+ .+++ ++++||||..|++.|
T Consensus 52 al~ik~G~l~~-~~~~~i~~~~~~~~~~--~~pvVlDPV~~~~s~~r------~~~~~-~Ll~~~~~~vITpN~~E~~~L 121 (249)
T TIGR00694 52 ALVINIGTLDK-ESIEAMIAAGKSANEL--GVPVVLDPVGVGATKFR------TETAL-ELLSEGRFAAIRGNAGEIASL 121 (249)
T ss_pred ceEEeCCCCCH-HHHHHHHHHHHHHHhc--CCCEEEcccccccchhH------HHHHH-HHHhhcCCceeCCCHHHHHHH
Confidence 45788899865 6678888888888766 678999999763 2211 12222 3665 479999999999999
Q ss_pred hCCC-------C-CCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEe-cccCCCCCCccHH
Q 021714 164 TGFR-------I-GSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVI-PKIPAYFTGTGDL 234 (308)
Q Consensus 164 ~g~~-------~-~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~GaGD~ 234 (308)
+|.. . .+.++..+++++|.+++...|++|++. ++++++ ++.+.+.. ++.....+|+||+
T Consensus 122 ~g~~~~~~gvd~~~~~~d~~~~a~~la~~~~~~VllkG~~---D~i~~~---------~~~~~~~~g~~~~~~~~GtGc~ 189 (249)
T TIGR00694 122 AGETGLMKGVDSGEGAADAIRAAQQAAQKYGTVVVITGEV---DYVSDG---------TSVYTIHNGTELLGKITGSGCL 189 (249)
T ss_pred hCCCCCCCCcCCccchHHHHHHHHHHHHHhCCEEEEECCC---cEEEeC---------CEEEEECCCChHHhCCccchHH
Confidence 9864 1 135678888999987755589999863 455532 34444332 2222345899999
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 021714 235 MTALLLGWSNKYRDNLDIAAELAVSSLQALLQRTVND 271 (308)
Q Consensus 235 f~a~l~~~l~~~g~~~~~A~~~A~a~~~~~i~~t~~~ 271 (308)
|++++++++++ |.++.+|+..|..+...+.+.+.+.
T Consensus 190 LssaIaa~LA~-g~~~~~A~~~A~~~~~~a~~~a~~~ 225 (249)
T TIGR00694 190 LGSVVAAFCAV-EEDPLDAAISACLLYKIAGELAAER 225 (249)
T ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999998 9999999999999999999988764
No 52
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.76 E-value=7.5e-17 Score=145.39 Aligned_cols=156 Identities=20% Similarity=0.174 Sum_probs=112.3
Q ss_pred cCEEEE-eccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhC
Q 021714 87 YTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (308)
Q Consensus 87 ~~~v~~-G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g 165 (308)
.+++.+ |..+ .+.+.++++.+++. +.++++||...+ .+ ..+. .+++++|+++||+.|+..++|
T Consensus 129 ~~~v~~~~~~~----~~~~~~~~~~a~~~--~~~v~~d~~~~~---~~------~~~~-~~~~~~dii~~n~~E~~~~~~ 192 (288)
T cd01941 129 AKPIVVDANLP----EEALEYLLALAAKH--GVPVAFEPTSAP---KL------KKLF-YLLHAIDLLTPNRAELEALAG 192 (288)
T ss_pred CCEEEEeCCCC----HHHHHHHHHhhhhc--CCcEEEEccchH---Hh------ccch-hhcccceEEeCCHHHHHHHhC
Confidence 565544 3332 23455667777765 778999995321 00 0111 378999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEe-cccC-CCCCCccHHHHHHHHHHH
Q 021714 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVI-PKIP-AYFTGTGDLMTALLLGWS 243 (308)
Q Consensus 166 ~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~t~GaGD~f~a~l~~~l 243 (308)
....+.++..++++.+.+.|++.|++|.|. +|+++..... + +..++++. +..+ +||+||||+|.|+|+++|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~vvit~G~-~Ga~~~~~~~---~---~~~~~~~~~~~~~~vDttGAGDaf~a~~~~~l 265 (288)
T cd01941 193 ALIENNEDENKAAKILLLPGIKNVIVTLGA-KGVLLSSREG---G---VETKLFPAPQPETVVNVTGAGDAFVAGLVAGL 265 (288)
T ss_pred cccCCchhHHHHHHHHHHcCCcEEEEEeCC-CcEEEEecCC---C---ceeEEecCCCCccceeCCCcHHHHHHHHHHHH
Confidence 765443444556677778899999999995 8987764200 0 23455655 2444 599999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHH
Q 021714 244 NKYRDNLDIAAELAVSSLQALLQ 266 (308)
Q Consensus 244 ~~~g~~~~~A~~~A~a~~~~~i~ 266 (308)
++ |+++++|+++|+++++.+++
T Consensus 266 ~~-g~~~~~al~~a~~~Aa~~~~ 287 (288)
T cd01941 266 LE-GMSLDDSLRFAQAAAALTLE 287 (288)
T ss_pred Hc-CCCHHHHHHHHHHHHHHHhc
Confidence 98 99999999999999887764
No 53
>PLN02967 kinase
Probab=99.76 E-value=3.4e-17 Score=158.46 Aligned_cols=167 Identities=14% Similarity=0.094 Sum_probs=117.7
Q ss_pred cCEEEEeccC--CHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCC-hhhHHHHHHhhcccceEEcCCHHHHHHh
Q 021714 87 YTHLLTGYIG--SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVP-SELVSVYREKVVPVASMLTPNQFEAEQL 163 (308)
Q Consensus 87 ~~~v~~G~l~--~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~-~~~~~~l~~~ll~~~diitpN~~E~~~L 163 (308)
++++.+|.+. ++...+.+.++++.++++ +++|+|||+++. .+|.+ ++..+.+.+ +++++|+|++|.+|+..|
T Consensus 336 A~i~hfgg~~ll~e~~~~all~alk~Ak~~--Gv~VsFDpNlR~--~lw~~~e~~~e~i~e-lL~~aDILk~NeeEl~~L 410 (581)
T PLN02967 336 AKMFYFNTHSLLDPTMRSTTLRAIKISKKL--GGVIFYDLNLPL--PLWSSSEETKSFIQE-AWNLADIIEVTKQELEFL 410 (581)
T ss_pred CCEEEEeCchhcccchHHHHHHHHHHHHHC--CCEEEEECCCCc--ccccchHHHHHHHHH-HHHhCCEEEECHHHHHHH
Confidence 6677776643 344467788889988887 889999999874 24532 334455665 899999999999999999
Q ss_pred hCCCCCCH-----H-------HHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC---CCC
Q 021714 164 TGFRIGSE-----A-------DGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP---AYF 228 (308)
Q Consensus 164 ~g~~~~~~-----~-------d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~t 228 (308)
+|...... + ...+.++.+...|++.|+||.|. +|++++.... . .....++.+.+. +||
T Consensus 411 tG~~~~~e~~~~~~~~~~~~~~~~e~a~~l~~~g~k~VVVTlG~-~Ga~~~~~~~---~---~~v~~~~a~~V~V~vVDT 483 (581)
T PLN02967 411 CGIEPTEEFDTKDNDKSKFVHYSPEVVAPLWHENLKVLFVTNGT-SKIHYYTKEH---N---GAVHGMEDAPITPFTSDM 483 (581)
T ss_pred hCCCccccccccccchhccccchHHHHHHHHhCCCCEEEEEECc-cceEEEECCC---c---eeEeeccCCCCCCCCCCC
Confidence 98532100 0 01234556667799999999995 8988765310 0 112223333343 699
Q ss_pred CCccHHHHHHHHHHHccCC-------CCHHHHHHHHHHHHHHHHH
Q 021714 229 TGTGDLMTALLLGWSNKYR-------DNLDIAAELAVSSLQALLQ 266 (308)
Q Consensus 229 ~GaGD~f~a~l~~~l~~~g-------~~~~~A~~~A~a~~~~~i~ 266 (308)
+||||+|.|+|+++|++ + .++++|+++|+++++.++.
T Consensus 484 TGAGDAF~AGfL~~Ll~-g~~~~~g~~~LeeaLrfAnAaAAL~vt 527 (581)
T PLN02967 484 SASGDGIVAGLMRMLTV-QPHLITDKGYLEKTIKYAIDCGVIDQW 527 (581)
T ss_pred CchhHHHHHHHHHHHHh-ccCcccccccHHHHHHHHHHHHHHHhc
Confidence 99999999999999986 4 5799999999997665553
No 54
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.74 E-value=2.1e-16 Score=134.22 Aligned_cols=137 Identities=24% Similarity=0.276 Sum_probs=100.9
Q ss_pred CEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCCC
Q 021714 88 THLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFR 167 (308)
Q Consensus 88 ~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~ 167 (308)
++++++..... .+.+.++++.+++. +.++++||..... .+..++ +++ +++++|+++||..|++.|+|.+
T Consensus 59 ~~v~i~~~~~~--~~~~~~~~~~~~~~--~~~v~~D~~~~~~--~~~~~~----~~~-~~~~~dvl~~n~~E~~~l~~~~ 127 (196)
T cd00287 59 DAVVISGLSPA--PEAVLDALEEARRR--GVPVVLDPGPRAV--RLDGEE----LEK-LLPGVDILTPNEEEAEALTGRR 127 (196)
T ss_pred cEEEEecccCc--HHHHHHHHHHHHHc--CCeEEEeCCcccc--ccccch----HHH-HHhhCCEECCCHHHHHHHhCCC
Confidence 45555543322 35667778888876 7899999976531 111111 343 7899999999999999999987
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHHHc
Q 021714 168 IGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSN 244 (308)
Q Consensus 168 ~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~l~ 244 (308)
..+.++..++++.+.++|++.|++|.|. +|+++.... +..++++.++.+ +|++||||+|+|+|+++++
T Consensus 128 ~~~~~~~~~~~~~l~~~g~~~vvvt~G~-~g~~~~~~~--------~~~~~~~~~~~~~vdt~GAGD~f~ag~~~~l~ 196 (196)
T cd00287 128 DLEVKEAAEAAALLLSKGPKVVIVTLGE-KGAIVATRG--------GTEVHVPAFPVKVVDTTGAGDAFLAALAAGLA 196 (196)
T ss_pred CCChHHHHHHHHHHHhcCCCEEEEEECC-CccEEEecC--------CceEEcCCccCCcccCCCchHHHHHHHHHHhC
Confidence 6666677788888999999999999995 888877520 345556554444 5999999999999999874
No 55
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.73 E-value=1.3e-16 Score=144.02 Aligned_cols=159 Identities=19% Similarity=0.139 Sum_probs=114.3
Q ss_pred ccCEEEE-eccC--CHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHH
Q 021714 86 YYTHLLT-GYIG--SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQ 162 (308)
Q Consensus 86 ~~~~v~~-G~l~--~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~ 162 (308)
..+.+.+ |+.. .......+.++++..++ +.++++||+++.. . ..+ +.++ .+++.+|+++||++|++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~D~~~~~~--~-~~~---~~~~-~~l~~~d~~~~n~~E~~~ 194 (289)
T cd01944 125 PYDYVYLSGYTLASENASKVILLEWLEALPA---GTTLVFDPGPRIS--D-IPD---TILQ-ALMAKRPIWSCNREEAAI 194 (289)
T ss_pred CCCEEEEeCccccCcchhHHHHHHHHHhccC---CCEEEEcCccccc--c-cCH---HHHH-HHHhcCCEEccCHHHHHH
Confidence 3666554 4422 22235566677766543 6789999976531 1 112 2234 378899999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHH
Q 021714 163 LTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLG 241 (308)
Q Consensus 163 L~g~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~ 241 (308)
|+|.... +...+++++.+.|++.|++|.|. +|+++.... +..++.+.++++ +||+||||+|+|+|++
T Consensus 195 l~g~~~~---~~~~~~~~~~~~~~~~vvvt~G~-~Ga~~~~~~--------~~~~~~~~~~~~vvDt~GAGDaf~ag~l~ 262 (289)
T cd01944 195 FAERGDP---AAEASALRIYAKTAAPVVVRLGS-NGAWIRLPD--------GNTHIIPGFKVKAVDTIGAGDTHAGGMLA 262 (289)
T ss_pred HhCCCCc---chHHHHHHHHhccCCeEEEEECC-CcEEEEecC--------CCeEEecCCCCCCccCCCchHHHHHHHHH
Confidence 9996532 22244667778889999999995 898876530 344555555666 5999999999999999
Q ss_pred HHccCCCCHHHHHHHHHHHHHHHHHH
Q 021714 242 WSNKYRDNLDIAAELAVSSLQALLQR 267 (308)
Q Consensus 242 ~l~~~g~~~~~A~~~A~a~~~~~i~~ 267 (308)
++.+ |.++++|+++|+++++.++++
T Consensus 263 ~~~~-g~~~~~a~~~a~a~aa~~~~~ 287 (289)
T cd01944 263 GLAK-GMSLADAVLLANAAAAIVVTR 287 (289)
T ss_pred HHHc-CCCHHHHHHHHHHHHHhhhcc
Confidence 9998 999999999999998887753
No 56
>PLN02548 adenosine kinase
Probab=99.73 E-value=9.3e-17 Score=148.04 Aligned_cols=161 Identities=17% Similarity=0.164 Sum_probs=110.7
Q ss_pred cCEEEE-eccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhC
Q 021714 87 YTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (308)
Q Consensus 87 ~~~v~~-G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g 165 (308)
.+.+.+ |+.+. ...+.+.++++.++++ +.++++|+. ...|.+ ...+.+++ +++.+|+++||+.|++.|+|
T Consensus 149 ~~~v~~~g~~~~-~~~~~~~~~~~~a~~~--g~~~~~~~~----~~~~~~-~~~~~l~~-~l~~~dil~~n~~E~~~l~g 219 (332)
T PLN02548 149 AKFYYIAGFFLT-VSPESIMLVAEHAAAN--NKTFMMNLS----APFICE-FFKDQLME-ALPYVDFLFGNETEARTFAK 219 (332)
T ss_pred CCEEEEEEEEcc-CCHHHHHHHHHHHHHc--CCEEEEECC----ChhHHH-HhHHHHHH-HHhhCCEEEecHHHHHHHhC
Confidence 565554 55432 2234566777777776 666667662 112221 12234554 78899999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHH----c--CCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEe---cccC-CCCCCccHHH
Q 021714 166 FRIGSEADGREACKILHA----A--GPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVI---PKIP-AYFTGTGDLM 235 (308)
Q Consensus 166 ~~~~~~~d~~~~~~~l~~----~--g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~t~GaGD~f 235 (308)
....+.++..++++.+.+ + +++.|++|.|. +|+++... ++.++++. +..+ +||+||||+|
T Consensus 220 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~vvvT~G~-~G~~~~~~---------~~~~~~pa~~~~~~~vvDttGAGDaF 289 (332)
T PLN02548 220 VQGWETEDVEEIALKISALPKASGTHKRTVVITQGA-DPTVVAED---------GKVKEFPVIPLPKEKLVDTNGAGDAF 289 (332)
T ss_pred ccCCCcccHHHHHHHHHHhhhhccccCCEEEEEeCC-CcEEEEEC---------CeEEEeccccCCcCccccCCCchHHH
Confidence 644332344444444432 2 57899999995 89887643 34555543 2333 5999999999
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHHHHHH
Q 021714 236 TALLLGWSNKYRDNLDIAAELAVSSLQALLQR 267 (308)
Q Consensus 236 ~a~l~~~l~~~g~~~~~A~~~A~a~~~~~i~~ 267 (308)
.|+|++++++ |+++++|+++|+++++.++++
T Consensus 290 ~ag~l~~l~~-g~~l~eal~~a~aaAa~~v~~ 320 (332)
T PLN02548 290 VGGFLSQLVQ-GKDIEECVRAGNYAANVIIQR 320 (332)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhc
Confidence 9999999998 999999999999998888874
No 57
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=99.73 E-value=8.8e-17 Score=152.54 Aligned_cols=160 Identities=18% Similarity=0.099 Sum_probs=116.4
Q ss_pred cCEEEE-eccC-CHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhh
Q 021714 87 YTHLLT-GYIG-SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (308)
Q Consensus 87 ~~~v~~-G~l~-~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~ 164 (308)
.+.+++ |++. .+...+.+.++++.++++ ++++++||... .......+.+.+.+++++|++++|+.|+..|+
T Consensus 225 adiv~l~g~~~~~~~~~~~~~~~~~~ak~~--g~~v~~d~s~~-----~~~~~~~~~l~~~ll~~vDil~~Ne~Ea~~l~ 297 (426)
T PLN02813 225 SRVLVVEGYLWELPQTIEAIAQACEEAHRA--GALVAVTASDV-----SCIERHRDDFWDVMGNYADILFANSDEARALC 297 (426)
T ss_pred CCEEEEEeeecCCCchHHHHHHHHHHHHHc--CCEEEEECCCc-----chhhhhHHHHHHHHHhcCCEEEeCHHHHHHHh
Confidence 665555 7643 223356778888888886 88999997321 01111122333446789999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHHH
Q 021714 165 GFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWS 243 (308)
Q Consensus 165 g~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~l 243 (308)
|.... ++..++++.|. .+++.|+||.|. +|+++... ++.++++.++++ +||+||||+|+|+|++++
T Consensus 298 g~~~~--~~~~~a~~~L~-~~~~~VVVT~G~-~Ga~~~~~---------~~~~~~pa~~v~vVDTtGAGDAF~Agfl~~l 364 (426)
T PLN02813 298 GLGSE--ESPESATRYLS-HFCPLVSVTDGA-RGSYIGVK---------GEAVYIPPSPCVPVDTCGAGDAYAAGILYGL 364 (426)
T ss_pred CCCCC--CCHHHHHHHHH-cCCCEEEEEeCC-CCeEEEEC---------CEEEEeCCCCCCcccCCChHHHHHHHHHHHH
Confidence 86321 34455666554 678999999995 89877643 445566655555 599999999999999999
Q ss_pred ccCCC-CHHHHHHHHHHHHHHHHHH
Q 021714 244 NKYRD-NLDIAAELAVSSLQALLQR 267 (308)
Q Consensus 244 ~~~g~-~~~~A~~~A~a~~~~~i~~ 267 (308)
.+ |. ++++|+++|+++++.++.+
T Consensus 365 ~~-G~~~l~~al~~A~a~Aa~~v~~ 388 (426)
T PLN02813 365 LR-GVSDLRGMGELAARVAATVVGQ 388 (426)
T ss_pred Hc-CCCCHHHHHHHHHHHHHHHHcc
Confidence 98 99 9999999999998888764
No 58
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=99.72 E-value=2.8e-16 Score=150.52 Aligned_cols=166 Identities=15% Similarity=0.075 Sum_probs=116.8
Q ss_pred cCEEEEeccC--CHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCC-hhhHHHHHHhhcccceEEcCCHHHHHHh
Q 021714 87 YTHLLTGYIG--SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVP-SELVSVYREKVVPVASMLTPNQFEAEQL 163 (308)
Q Consensus 87 ~~~v~~G~l~--~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~-~~~~~~l~~~ll~~~diitpN~~E~~~L 163 (308)
++++.++.+. ++...+.+.++++.++++ +++|+|||+++. .+|-+ ++..+.+.+ +++++|++++|++|++.|
T Consensus 267 a~ilh~~~~~l~~~~~~~a~~~al~~Ak~~--G~~VsfDpN~R~--~LW~~~~~~~~~i~~-~l~~aDIl~~SeeEa~~L 341 (496)
T PLN02543 267 ARMFHFNSEVLTSPSMQSTLFRAIELSKKF--GGLIFFDLNLPL--PLWRSRDETRELIKK-AWNEADIIEVSRQELEFL 341 (496)
T ss_pred CceEEECChhhcCchHHHHHHHHHHHHHHC--CCEEEEeCCCCc--cccCCHHHHHHHHHH-HHHhCCEEEecHHHHHHH
Confidence 6667766532 344467788889988886 899999999874 25643 345555554 899999999999999999
Q ss_pred hCCCCC------CHH------------------HHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEE--
Q 021714 164 TGFRIG------SEA------------------DGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQF-- 217 (308)
Q Consensus 164 ~g~~~~------~~~------------------d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~-- 217 (308)
+|.+.. +.+ +. +.+..+.+.|++.|+||.|. +|+++..... ....
T Consensus 342 tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~g~~~VVVT~G~-~Ga~~~t~~~-------~g~v~~ 412 (496)
T PLN02543 342 LDEDYYERKRNYPPQYYAESFEQTKNWRDYYHYTP-EEIAPLWHDGLKLLLVTDGT-LRIHYYTPKF-------DGVVVG 412 (496)
T ss_pred hCCCcccccccccchhhhhhhhhhhcccccccCCH-HHHHHHHHCCCCEEEEEcCC-CcEEEEECCC-------cccccc
Confidence 986421 111 11 22456667799999999995 8988865310 1110
Q ss_pred --EEEecccCCCCCCccHHHHHHHHHHHcc------CCCCHHHHHHHHHHHHHHHHH
Q 021714 218 --KIVIPKIPAYFTGTGDLMTALLLGWSNK------YRDNLDIAAELAVSSLQALLQ 266 (308)
Q Consensus 218 --~~~~~~~~~~t~GaGD~f~a~l~~~l~~------~g~~~~~A~~~A~a~~~~~i~ 266 (308)
....+...+||+||||+|.|+|+++|.+ .+.++++|+++|+++++.++.
T Consensus 413 ~~~~~v~~~~VDTTGAGDAF~AGfL~~Ll~~~~~~~~g~~l~ealrfAnAaaAl~vt 469 (496)
T PLN02543 413 TEDVLITPFTCDRTGSGDAVVAAIMRKLTTCPEMFEDQDVLERQLRFAVAAGIISQW 469 (496)
T ss_pred cccccCCCCCcCCCchHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHc
Confidence 0111222379999999999999999973 157899999999998776664
No 59
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=99.72 E-value=1.5e-16 Score=144.07 Aligned_cols=159 Identities=26% Similarity=0.315 Sum_probs=120.8
Q ss_pred cCEEEE-e-ccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhh
Q 021714 87 YTHLLT-G-YIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (308)
Q Consensus 87 ~~~v~~-G-~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~ 164 (308)
.+.+.+ | .++.......+..+.+..++. + + +|+++.+.. + ....+.+++ +++.+|+++||..|+..|+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~--~~~~~~~~~--~--~~~~~~~~~-~l~~~dil~~n~~E~~~l~ 197 (301)
T PF00294_consen 128 ADILHLSGVSLPEGIPEDLLEALAKAAKKN--G-P--FDPVFRDPS--W--DDLREDLKE-LLPYADILKPNEEEAEALT 197 (301)
T ss_dssp ESEEEEESGHCSTTSHHHHHHHHHHHHHHT--T-E--EEEEEEGGG--S--HHHHHHHHH-HHHTSSEEEEEHHHHHHHH
T ss_pred ccceeecccccccccccceeeecccccccc--c-c--ccccccccc--c--cccchhhhh-hccccchhccccccccccc
Confidence 565554 5 366655556666666666654 3 1 444443211 1 113455665 7799999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEe-cccC-CCCCCccHHHHHHHHHH
Q 021714 165 GFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVI-PKIP-AYFTGTGDLMTALLLGW 242 (308)
Q Consensus 165 g~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~t~GaGD~f~a~l~~~ 242 (308)
+....+.+++.+++++++.+|++.+++|.|. +|.++... ++.++++. +... +|++||||+|.|+|+++
T Consensus 198 ~~~~~~~~~~~~~~~~l~~~g~~~vivt~G~-~G~~~~~~---------~~~~~~~~~~~~~vvdttGAGD~f~A~~i~~ 267 (301)
T PF00294_consen 198 GSKIDDPEDALAALRELQARGVKIVIVTLGE-DGALYYTN---------DESYHVPPVPPVNVVDTTGAGDAFAAGFIYG 267 (301)
T ss_dssp TCSTSSHHHHHHHHHHHHHTTSSEEEEEEGG-GEEEEEET---------TEEEEEEEESSSSSSSCTTHHHHHHHHHHHH
T ss_pred cccccchhhhhccccccchhhhhhhhccccc-cCcccccc---------cccccccccccccccceeccchhhhHHHHHH
Confidence 9987788899999999999999999999995 89888753 45556655 4454 59999999999999999
Q ss_pred HccCCCCHHHHHHHHHHHHHHHHH
Q 021714 243 SNKYRDNLDIAAELAVSSLQALLQ 266 (308)
Q Consensus 243 l~~~g~~~~~A~~~A~a~~~~~i~ 266 (308)
+.+ |.++++|+++|+++++.+++
T Consensus 268 l~~-~~~~~~a~~~a~~~aa~~v~ 290 (301)
T PF00294_consen 268 LLS-GMSLEEALKFANAAAALKVQ 290 (301)
T ss_dssp HHT-THHHHHHHHHHHHHHHHHHT
T ss_pred HHc-CCCHHHHHHHHHHHHHHHhC
Confidence 998 99999999999998888775
No 60
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.72 E-value=5.2e-16 Score=149.79 Aligned_cols=153 Identities=20% Similarity=0.192 Sum_probs=112.7
Q ss_pred ccCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhC
Q 021714 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (308)
Q Consensus 86 ~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g 165 (308)
.++++++..++.+ ..+.+.++++.++++ +.++++||...+ + ..++.+|+++||..|++.|+|
T Consensus 143 ~~~~v~is~~~~~-~~~~~~~~~~~~k~~--g~~vv~Dp~~~~----~-----------~~~~~~dil~pN~~Ea~~l~g 204 (473)
T PRK11316 143 SIGALVLSDYAKG-ALASVQAMIQLARKA--GVPVLIDPKGTD----F-----------ERYRGATLLTPNLSEFEAVVG 204 (473)
T ss_pred cCCEEEEecCCcc-chhHHHHHHHHHHhc--CCeEEEeCCCCC----c-----------cccCCCeEECcCHHHHHHHhC
Confidence 3676655322222 134566778888776 789999995321 1 245789999999999999999
Q ss_pred CCCCCHHHHHHHHHHHH-HcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHHH
Q 021714 166 FRIGSEADGREACKILH-AAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWS 243 (308)
Q Consensus 166 ~~~~~~~d~~~~~~~l~-~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~l 243 (308)
.. .+.++..+.+++++ ++|++.|+||+|. +|.+++... +..++++.++++ +|++||||+|+|+|+++|
T Consensus 205 ~~-~~~~~~~~~~~~l~~~~g~~~vvVT~G~-~G~~~~~~~--------~~~~~~~~~~v~vvDttGAGDaF~aa~~~~l 274 (473)
T PRK11316 205 KC-KDEAELVEKGMKLIADYDLSALLVTRSE-QGMTLLQPG--------KAPLHLPTQAREVYDVTGAGDTVISVLAAAL 274 (473)
T ss_pred CC-CCHHHHHHHHHHHHHhcCCCEEEEEecC-CCcEEEecC--------CceEEecCcCCCCCCCCCCcHHHHHHHHHHH
Confidence 52 34556666666665 6899999999995 888766430 223556665565 599999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHH
Q 021714 244 NKYRDNLDIAAELAVSSLQALLQR 267 (308)
Q Consensus 244 ~~~g~~~~~A~~~A~a~~~~~i~~ 267 (308)
++ |+++++|+++|+++++.++..
T Consensus 275 ~~-g~~~~~al~~A~a~Aa~~v~~ 297 (473)
T PRK11316 275 AA-GNSLEEACALANAAAGVVVGK 297 (473)
T ss_pred Hc-CCCHHHHHHHHHHHHHhhccc
Confidence 98 999999999999877776643
No 61
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.71 E-value=3e-16 Score=141.01 Aligned_cols=151 Identities=21% Similarity=0.262 Sum_probs=111.4
Q ss_pred ccCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhC
Q 021714 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (308)
Q Consensus 86 ~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g 165 (308)
..+.++++.++. +...++++.+++. .++++||.. .|. ....+.+++ +++++|+++||..|++.|+|
T Consensus 114 ~~~~v~~~~~~~----~~~~~~~~~~~~~---~~v~~D~~~-----~~~-~~~~~~~~~-~l~~~d~~~~n~~E~~~l~g 179 (277)
T cd01946 114 DSEFVFLGNIAP----ELQREVLEQVKDP---KLVVMDTMN-----FWI-SIKPEKLKK-VLAKVDVVIINDGEARQLTG 179 (277)
T ss_pred cCCEEEECCCCH----HHHHHHHHHHHhC---CEEEEccHH-----Hhh-hhhHHHHHH-HhccCCEEeCCHHHHHHHhC
Confidence 367788876653 3345566667653 579999831 221 122344555 88999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC--CCCCCccHHHHHHHHHHH
Q 021714 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP--AYFTGTGDLMTALLLGWS 243 (308)
Q Consensus 166 ~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~t~GaGD~f~a~l~~~l 243 (308)
. ++..++++.|.++|++.|++|.|. +|+++... ++.++++.++++ +||+||||+|+|+|+++|
T Consensus 180 ~-----~~~~~~~~~l~~~g~~~vvvt~G~-~G~~~~~~---------~~~~~~~~~~~~~~vDttGAGDaF~Agfl~~l 244 (277)
T cd01946 180 A-----ANLVKAARLILAMGPKALIIKRGE-YGALLFTD---------DGYFAAPAYPLESVFDPTGAGDTFAGGFIGYL 244 (277)
T ss_pred C-----chHHHHHHHHHHcCCCEEEEecCC-CcEEEEEC---------CceEEcCCcccCccCCCCCchHHHHHHHHHHH
Confidence 5 356778888889999999999995 78877643 345556555543 499999999999999999
Q ss_pred ccCC-----CCHHHHHHHHHHHHHHHHH
Q 021714 244 NKYR-----DNLDIAAELAVSSLQALLQ 266 (308)
Q Consensus 244 ~~~g-----~~~~~A~~~A~a~~~~~i~ 266 (308)
.+ | .++++|+++|+++++.++.
T Consensus 245 ~~-~~~~~~~~~~~a~~~a~~~aa~~~~ 271 (277)
T cd01946 245 AS-QKDTSEANMRRAIIYGSAMASFCVE 271 (277)
T ss_pred Hh-CCCcchhhHHHHHHHhHHHHhhhhh
Confidence 97 6 3578888888887766665
No 62
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=99.70 E-value=4e-16 Score=145.61 Aligned_cols=159 Identities=18% Similarity=0.062 Sum_probs=113.5
Q ss_pred ccCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhc--ccceEEcCCHHHHHHh
Q 021714 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVV--PVASMLTPNQFEAEQL 163 (308)
Q Consensus 86 ~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll--~~~diitpN~~E~~~L 163 (308)
..+.+++.+.. ...+.+.++++.++++ ++++++|+.- .+..+...+.+.+ ++ .++|++++|+.|+..|
T Consensus 177 ~~~~v~v~~~~--~~~~~~~~~~~~A~~~--g~~v~lD~s~-----~~~v~~~r~~l~~-ll~~~~vDilf~Ne~Ea~~l 246 (367)
T PLN02379 177 GSKWLVLRYGF--YNLEVIEAAIRLAKQE--GLSVSLDLAS-----FEMVRNFRSPLLQ-LLESGKIDLCFANEDEAREL 246 (367)
T ss_pred cCCEEEEEccc--CCHHHHHHHHHHHHHc--CCEEEEeccc-----hhhhhhhhHHHHH-HhhcCCccEEEcCHHHHHHH
Confidence 36777776532 1245677888888876 8899999842 1111111233443 55 4899999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecc-cC-CCCCCccHHHHHHHHH
Q 021714 164 TGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPK-IP-AYFTGTGDLMTALLLG 241 (308)
Q Consensus 164 ~g~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~t~GaGD~f~a~l~~ 241 (308)
++.... ++.+++.+ +++.+++.++||.|. +|+++... ++.++++.++ .+ +||+||||+|+|+|++
T Consensus 247 ~~~~~~--~~~~~~~~-~l~~~~~~vvvT~G~-~Ga~~~~~---------~~~~~v~a~~~~~vVDTtGAGDaFaagfl~ 313 (367)
T PLN02379 247 LRGEQE--SDPEAALE-FLAKYCNWAVVTLGS-KGCIARHG---------KEVVRVPAIGETNAVDATGAGDLFASGFLY 313 (367)
T ss_pred hcCCCC--CCHHHHHH-HHHhcCCEEEEEECC-CCeEEEEC---------CEEEEecCCCCCCcccCCChhHHHHHHHHH
Confidence 974321 12333333 345578999999995 89888753 4556666554 34 6999999999999999
Q ss_pred HHccCCCCHHHHHHHHHHHHHHHHHHH
Q 021714 242 WSNKYRDNLDIAAELAVSSLQALLQRT 268 (308)
Q Consensus 242 ~l~~~g~~~~~A~~~A~a~~~~~i~~t 268 (308)
++.+ |+++++|+++|+++++.++++-
T Consensus 314 gl~~-G~~l~~a~~~g~~aAa~vi~~~ 339 (367)
T PLN02379 314 GLIK-GLSLEECCKVGACSGGSVVRAL 339 (367)
T ss_pred HHHC-CCCHHHHHHHHHHHHHHHHhcc
Confidence 9998 9999999999999998888744
No 63
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=99.70 E-value=5.3e-16 Score=138.21 Aligned_cols=146 Identities=13% Similarity=0.087 Sum_probs=111.1
Q ss_pred ccCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhC
Q 021714 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (308)
Q Consensus 86 ~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g 165 (308)
.++.+.+...+. .+.+.++++.++++ ++++++||..+ |. . +.+.+ +++.+|++.+|..|..
T Consensus 112 ~~~~v~~~~~~~---~~~~~~~~~~a~~~--g~~v~~D~~~~-----~~-~---~~~~~-~~~~~d~~~~~~~~~~---- 172 (264)
T cd01940 112 QFDLVHTGIYSH---EGHLEKALQALVGA--GALISFDFSDR-----WD-D---DYLQL-VCPYVDFAFFSASDLS---- 172 (264)
T ss_pred cCCEEEEccccc---HHHHHHHHHHHHHc--CCEEEEcCccc-----CC-H---HHHHh-hcccCCEEEechhhcC----
Confidence 367777665443 34567788888876 78999999643 11 1 12343 7899999999987652
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHHHc
Q 021714 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSN 244 (308)
Q Consensus 166 ~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~l~ 244 (308)
.++..++++.+.++|++.|++|.|. +|+++... ++.++.+.++++ +||+||||+|.|+|++++.
T Consensus 173 -----~~~~~~~~~~l~~~~~~~vvvT~G~-~G~~~~~~---------~~~~~~~~~~~~~vDttGAGDaf~ag~i~~l~ 237 (264)
T cd01940 173 -----DEEVKAKLKEAVSRGAKLVIVTRGE-DGAIAYDG---------AVFYSVAPRPVEVVDTLGAGDSFIAGFLLSLL 237 (264)
T ss_pred -----cchHHHHHHHHHHcCCCEEEEEECC-CCeEEEeC---------CeEEecCCcCCCCCCCCCchHHHHHHHHHHHH
Confidence 1345667788888899999999995 89887643 445566655555 5999999999999999999
Q ss_pred cCCCC-HHHHHHHHHHHHHHHHH
Q 021714 245 KYRDN-LDIAAELAVSSLQALLQ 266 (308)
Q Consensus 245 ~~g~~-~~~A~~~A~a~~~~~i~ 266 (308)
+ |++ +++|+++|+++++.+++
T Consensus 238 ~-g~~~~~~al~~a~~~aa~~~~ 259 (264)
T cd01940 238 A-GGTAIAEAMRQGAQFAAKTCG 259 (264)
T ss_pred h-CCchHHHHHHHHHHHHHHHhc
Confidence 8 999 99999999998887765
No 64
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=99.70 E-value=8.3e-16 Score=141.52 Aligned_cols=165 Identities=12% Similarity=0.076 Sum_probs=111.6
Q ss_pred cCEEEEeccCCHhHHHHHHHHHHHHHhc----CCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHH
Q 021714 87 YTHLLTGYIGSVSFLNTILQVVEKLRSI----NPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQ 162 (308)
Q Consensus 87 ~~~v~~G~l~~~~~~~~~~~~l~~~k~~----~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~ 162 (308)
++.+.++..+.. ..+...++++.+++. +.+.++++||.... + .....+.+.+ +++++|+++||++|++.
T Consensus 121 a~~~hl~~~~~~-~~~~~~~~~~~a~~~~~d~~~g~~~~~d~~~~~----~-~~~~~~~l~~-~l~~~dil~~n~~Ea~~ 193 (328)
T cd01943 121 SSCIHLICSPER-CASIVDDIINLFKLLKGNSPTRPKIVWEPLPDS----C-DPENLEDLLQ-ALPRVDVFSPNLEEAAR 193 (328)
T ss_pred CCeEEEECCHHH-HHHHHHHHHHHHHhhccccCCccEEEEecCCcc----c-ChhhHHHHHH-HhccCCEECCCHHHHHH
Confidence 555555332211 235667777877761 12677889985321 1 1112234554 89999999999999999
Q ss_pred hhCCCCCCHHHHHH-H-------HHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEeccc---C-CCCCC
Q 021714 163 LTGFRIGSEADGRE-A-------CKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKI---P-AYFTG 230 (308)
Q Consensus 163 L~g~~~~~~~d~~~-~-------~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~t~G 230 (308)
|+|....+.....+ . ...+...|.+.|+||.|. +|+++.... + +..++++.+.+ + +||+|
T Consensus 194 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vvvt~G~-~Ga~~~~~~-----~--~~~~~~p~~~v~~~~vvDttG 265 (328)
T cd01943 194 LLGLPTSEPSSDEEKEAVLQALLFSGILQDPGGGVVLRCGK-LGCYVGSAD-----S--GPELWLPAYHTKSTKVVDPTG 265 (328)
T ss_pred HhCCCCCCccchhhhhhhHHHHHHHhhhccCCCEEEEEeCC-CCCEEEecC-----C--CceEecCCccCCCCcccCCCC
Confidence 99975432211111 1 112245688999999995 899886520 0 33455555544 4 59999
Q ss_pred ccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHH
Q 021714 231 TGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQR 267 (308)
Q Consensus 231 aGD~f~a~l~~~l~~~g~~~~~A~~~A~a~~~~~i~~ 267 (308)
|||+|.|+|++++.+ |.++++|+++|+++++.++.+
T Consensus 266 AGDaF~agfl~~l~~-g~~~~~al~~a~a~Aa~~v~~ 301 (328)
T cd01943 266 GGNSFLGGFAAGLAL-TKSIDEACIYGSVAASFAIEQ 301 (328)
T ss_pred chHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHcc
Confidence 999999999999998 999999999999988887764
No 65
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=99.69 E-value=5.6e-15 Score=131.71 Aligned_cols=164 Identities=18% Similarity=0.118 Sum_probs=115.3
Q ss_pred CEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCCC
Q 021714 88 THLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFR 167 (308)
Q Consensus 88 ~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~ 167 (308)
-++.+|++. +...+.+...++.+++. +.|+|+||+..... .+ ..+....+.+ .+++++||||..|+..|+|.+
T Consensus 58 lvi~~G~l~-~~~~~~i~~~~~~a~~~--~~pvVlDpv~~~~~-~~-~~~~~~~ll~--~~~~~vItPN~~E~~~L~g~~ 130 (263)
T PRK09355 58 LVINIGTLT-EERIEAMLAAGKIANEA--GKPVVLDPVGVGAT-SY-RTEFALELLA--EVKPAVIRGNASEIAALAGEA 130 (263)
T ss_pred eEEeCCCCC-HHHHHHHHHHHHHHHhc--CCCEEECCcccCcc-hh-hHHHHHHHHH--hcCCcEecCCHHHHHHHhCCC
Confidence 356667774 45566677777767765 67899999875311 11 2232222222 136899999999999999864
Q ss_pred C--------CCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEe-cccCCCCCCccHHHHHH
Q 021714 168 I--------GSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVI-PKIPAYFTGTGDLMTAL 238 (308)
Q Consensus 168 ~--------~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~GaGD~f~a~ 238 (308)
. .+.++..++++.+.+++...|++|++. +++..+ ++.+.+.. .+...+.+|+||+++|+
T Consensus 131 ~~~~~vd~~~~~~~~~~~a~~la~~~~~~VvvkG~~---d~I~~~---------~~~~~~~~g~~~~~~v~GtGc~L~~~ 198 (263)
T PRK09355 131 AETKGVDSTDGSADAVEIAKAAAKKYGTVVVVTGEV---DYITDG---------ERVVSVHNGHPLMTKVTGTGCLLSAV 198 (263)
T ss_pred cccCCcCCCCCHHHHHHHHHHHHHHhCCEEEEECCC---cEEEeC---------CEEEEEeCCCcccCCcccccHHHHHH
Confidence 2 124578888999988766789999864 455532 34444542 22224669999999999
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 021714 239 LLGWSNKYRDNLDIAAELAVSSLQALLQRTVND 271 (308)
Q Consensus 239 l~~~l~~~g~~~~~A~~~A~a~~~~~i~~t~~~ 271 (308)
+++++++ |.++.+|+..|..+...+-+...+.
T Consensus 199 iaa~lA~-g~~~~~A~~~A~~~~~~a~~~a~~~ 230 (263)
T PRK09355 199 VAAFAAV-EKDYLEAAAAACAVYGIAGELAAER 230 (263)
T ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998 9999999999999988888766553
No 66
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=99.69 E-value=4.9e-16 Score=141.86 Aligned_cols=142 Identities=25% Similarity=0.277 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHH
Q 021714 102 NTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKIL 181 (308)
Q Consensus 102 ~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~d~~~~~~~l 181 (308)
+.+.+.++.++++ +.++++|++++.. .|. .+.+. .+++.+|++++|+.|++.|+|. . ++..++.+.+
T Consensus 145 ~~~~~~~~~a~~~--g~~v~~d~~~~~~--~~~----~~~~~-~~l~~~d~~~~n~~E~~~l~g~-~---~~~~~~~~~~ 211 (311)
T COG0524 145 EALLAALELAKAA--GVTVSFDLNPRPA--LWD----RELLE-ELLALADILFPNEEEAELLTGL-E---EDAEAAAALL 211 (311)
T ss_pred HHHHHHHHHHHHc--CCeEEEecCCCcc--ccc----hhhHH-HHHhhCCEEeCCHHHHHHHhCC-C---ccHHHHHHHH
Confidence 6778888888887 7899999987742 111 23344 4899999999999999999996 1 1233333667
Q ss_pred HHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCc--EEEEEecccC-CCCCCccHHHHHHHHHHHccCCCCHHHHHHHHH
Q 021714 182 HAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPE--QFKIVIPKIP-AYFTGTGDLMTALLLGWSNKYRDNLDIAAELAV 258 (308)
Q Consensus 182 ~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~t~GaGD~f~a~l~~~l~~~g~~~~~A~~~A~ 258 (308)
+..|++.|++|.|. +|+++.... ++ ....+.++++ +||+||||+|.|+|++++.+ |.++++|+++|+
T Consensus 212 ~~~~~~~vvvt~G~-~Ga~~~~~~--------~~~~~~~~~~~~~~vvDttGAGDaF~agfl~~~~~-g~~~~~a~~~a~ 281 (311)
T COG0524 212 LAKGVKTVVVTLGA-EGAVVFTGG--------GEVTVPVPAAFKVKVVDTTGAGDAFAAGFLAGLLE-GKSLEEALRFAN 281 (311)
T ss_pred hhcCCCEEEEEeCC-CcEEEEeCC--------CceeeccCCCCccccccCCCchHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 78899999999995 898887541 11 1112234444 59999999999999999998 999999999999
Q ss_pred HHHHHHHH
Q 021714 259 SSLQALLQ 266 (308)
Q Consensus 259 a~~~~~i~ 266 (308)
++++.++.
T Consensus 282 a~aa~~~~ 289 (311)
T COG0524 282 AAAALAVT 289 (311)
T ss_pred HHhhhhhc
Confidence 87666664
No 67
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=99.68 E-value=8.9e-16 Score=138.17 Aligned_cols=149 Identities=19% Similarity=0.133 Sum_probs=110.7
Q ss_pred ccCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhC
Q 021714 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (308)
Q Consensus 86 ~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g 165 (308)
.++++.++... .+...++++.++++ +.++++|..+... .+ +.+ +++.+|+++||+.|++.++|
T Consensus 126 ~~~~v~i~~~~----~~~~~~~~~~~~~~--g~~v~~~~~~~~~------~~----~~~-~~~~~dil~~n~~e~~~l~~ 188 (284)
T cd01945 126 GADAVLVDGRQ----PEAALHLAQEARAR--GIPIPLDLDGGGL------RV----LEE-LLPLADHAICSENFLRPNTG 188 (284)
T ss_pred cCCEEEEcCCC----HHHHHHHHHHHHHc--CCCeeEeccCCcc------cc----hHH-HhccCCEEEeChhHHhhhcC
Confidence 36776664432 13456778888876 6666666533211 11 333 78899999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHHHc
Q 021714 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSN 244 (308)
Q Consensus 166 ~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~l~ 244 (308)
.. +. ++++.+.+.|++.|+||.|. +|++++... ++.++++.+..+ +||+||||+|.|+|+++|+
T Consensus 189 ~~-----~~-~~~~~l~~~~~~~vivt~G~-~G~~~~~~~--------~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~l~ 253 (284)
T cd01945 189 SA-----DD-EALELLASLGIPFVAVTLGE-AGCLWLERD--------GELFHVPAFPVEVVDTTGAGDVFHGAFAHALA 253 (284)
T ss_pred CC-----HH-HHHHHHHhcCCcEEEEEECC-CCeEEEcCC--------CCEEecCCCccccccCCCcHHHHHHHHHHHHH
Confidence 63 11 56677778899999999995 898876520 345566554555 5999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Q 021714 245 KYRDNLDIAAELAVSSLQALLQR 267 (308)
Q Consensus 245 ~~g~~~~~A~~~A~a~~~~~i~~ 267 (308)
+ |.++++|+++|+++++.++.+
T Consensus 254 ~-g~~~~~al~~a~~~Aa~~~~~ 275 (284)
T cd01945 254 E-GMPLREALRFASAAAALKCRG 275 (284)
T ss_pred c-CCCHHHHHHHHHHHHHHHHhc
Confidence 8 999999999999988888764
No 68
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.66 E-value=1.1e-15 Score=135.42 Aligned_cols=146 Identities=17% Similarity=0.195 Sum_probs=104.2
Q ss_pred ccCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhC
Q 021714 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (308)
Q Consensus 86 ~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g 165 (308)
..+.+.++.++.+. ...+.+. ..++++||..... .+...+. .+. .+++++|+++||+.|+..+
T Consensus 107 ~~~~~~~~~~~~~~----~~~~~~~------~~~v~~D~~~~~~--~~~~~~~--~~~-~~l~~~di~~~n~~E~~~~-- 169 (254)
T cd01937 107 TAEIVILGPVPEEI----SPSLFRK------FAFISLDAQGFLR--RANQEKL--IKC-VILKLHDVLKLSRVEAEVI-- 169 (254)
T ss_pred cccEEEECCCcchh----cHHHHhh------hhheeEcccccee--eccccch--HHH-hhcccCcEEEEcHHHHhhc--
Confidence 46778887765322 2222222 1479999963211 1211111 123 4899999999999999983
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHHHc
Q 021714 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSN 244 (308)
Q Consensus 166 ~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~l~ 244 (308)
. +.+++++.+.++|++.|++|.|. +|.++... ++.++++.++.+ +|++||||+|+|+|++++.
T Consensus 170 ---~---~~~~~~~~l~~~g~~~vvvt~g~-~g~~~~~~---------~~~~~~~~~~~~~vdt~GAGD~f~a~~~~~l~ 233 (254)
T cd01937 170 ---S---TPTELARLIKETGVKEIIVTDGE-EGGYIFDG---------NGKYTIPASKKDVVDPTGAGDVFLAAFLYSRL 233 (254)
T ss_pred ---C---CHHHHHHHHHHcCCCEEEEeeCC-cceEEEEC---------CccEEccccCceeccCCCchHHHHHHHHHHHH
Confidence 1 34566777888899999999995 78877653 344555555554 6999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 021714 245 KYRDNLDIAAELAVSSLQALL 265 (308)
Q Consensus 245 ~~g~~~~~A~~~A~a~~~~~i 265 (308)
+ |.++++|+++|+++++.++
T Consensus 234 ~-g~~~~~a~~~a~~~aa~~i 253 (254)
T cd01937 234 S-GKDIKEAAEFAAAAAAKFI 253 (254)
T ss_pred c-CCCHHHHHHHHHHHHHHHh
Confidence 8 9999999999999887765
No 69
>PRK15074 inosine/guanosine kinase; Provisional
Probab=99.65 E-value=3.4e-15 Score=141.25 Aligned_cols=165 Identities=19% Similarity=0.066 Sum_probs=112.3
Q ss_pred cCEEEE-eccCC----HhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHH
Q 021714 87 YTHLLT-GYIGS----VSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAE 161 (308)
Q Consensus 87 ~~~v~~-G~l~~----~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~ 161 (308)
.+.+.+ |++.. ....+.+.++++.++++ +++|++||+.+.- .+ ...+.+++.+++++|++++|++|+.
T Consensus 187 a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~--G~~VslD~s~~~~--v~---~~~~~~~e~l~~~vDILf~NeeEa~ 259 (434)
T PRK15074 187 ASALVLTAYLVRCKPGEPMPEATMKAIEYAKKH--NVPVVLTLGTKFV--IE---DNPQWWQEFLKEHVSILAMNEDEAE 259 (434)
T ss_pred CCEEEEeeeehhcccCCCcHHHHHHHHHHHHHc--CCEEEEECcchhh--cc---ccHHHHHHHHHhcCCEEEcCHHHHH
Confidence 565544 66432 12346677888888886 8999999975410 01 1112233346679999999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcE-------------------------
Q 021714 162 QLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQ------------------------- 216 (308)
Q Consensus 162 ~L~g~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~------------------------- 216 (308)
.|+|.. +..++++.+.+ +++.|+||.|. +|+++.....+...+ +..
T Consensus 260 ~LtG~~-----d~eea~~~L~~-~~~~VVVTlG~-~Ga~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (434)
T PRK15074 260 ALTGES-----DPLLASDKALD-WVDLVLCTAGP-IGLYMAGYTEDEAKR--ETQHPLLPGAIAEFNRYEFSRAMRKKDC 330 (434)
T ss_pred HHhCCC-----CHHHHHHHHHc-CCCEEEEEECC-CCEEEEecccccccC--ceeeeccccccccccchhcccchhcccc
Confidence 999863 34455666664 47899999995 899876321100000 010
Q ss_pred -------EEEEec---ccC-CCCCCccHHHHHHHHHHHccCCC--------------------CHHHHHHHHHHHHHHHH
Q 021714 217 -------FKIVIP---KIP-AYFTGTGDLMTALLLGWSNKYRD--------------------NLDIAAELAVSSLQALL 265 (308)
Q Consensus 217 -------~~~~~~---~~~-~~t~GaGD~f~a~l~~~l~~~g~--------------------~~~~A~~~A~a~~~~~i 265 (308)
++++.. +.+ +||+||||+|+|+|+++|.+ |+ ++.+|+++|+.+++.++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~vDttGAGD~f~~gfl~~l~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~vi 409 (434)
T PRK15074 331 QNPLRVYSHIAPYMGGPEKIMNTNGAGDGALSALLHDITA-NSYHRSNVPNSSKHKRTYLTYSSLAQVCKYANRVSYEVL 409 (434)
T ss_pred ccccccccccCcccCCCCcceeCCCcHHHHHHHHHHHHHC-CCcccccccccccccccccccCCHHHHHHHHHHHHHHHH
Confidence 123322 334 59999999999999999998 87 89999999999999998
Q ss_pred HHH
Q 021714 266 QRT 268 (308)
Q Consensus 266 ~~t 268 (308)
++.
T Consensus 410 ~~~ 412 (434)
T PRK15074 410 NQH 412 (434)
T ss_pred hhc
Confidence 754
No 70
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.64 E-value=3.3e-15 Score=134.10 Aligned_cols=144 Identities=19% Similarity=0.187 Sum_probs=103.8
Q ss_pred cCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHH---HHh
Q 021714 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEA---EQL 163 (308)
Q Consensus 87 ~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~---~~L 163 (308)
.+.+.+.... .+.++++.++++ +.++++||..... .+ .. +.+++ +++++|+++||+.|+ +.+
T Consensus 127 ~~~~~~~~~~------~~~~~~~~~~~~--g~~v~~D~~~~~~--~~-~~---~~~~~-~l~~~dil~~n~~E~~~l~~~ 191 (279)
T cd01942 127 ADIVHLSSGP------GLIELARELAAG--GITVSFDPGQELP--RL-SG---EELEE-ILERADILFVNDYEAELLKER 191 (279)
T ss_pred cCEEEeCCch------HHHHHHHHHHHc--CCeEEEcchhhhh--hc-cH---HHHHH-HHhhCCEEecCHHHHHHHHhh
Confidence 5666544322 355667777765 7899999964321 11 11 23444 788999999999999 556
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEec-ccC-CCCCCccHHHHHHHHH
Q 021714 164 TGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIP-KIP-AYFTGTGDLMTALLLG 241 (308)
Q Consensus 164 ~g~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~t~GaGD~f~a~l~~ 241 (308)
+|.. +.. ..+|++.|++|.|. +|.++... ++.++++.. +.+ +||+||||+|+|+|++
T Consensus 192 ~~~~-----~~~------~~~~~~~vvvt~G~-~G~~~~~~---------~~~~~~~~~~~~~vvDttGAGDaf~a~~i~ 250 (279)
T cd01942 192 TGLS-----EAE------LASGVRVVVVTLGP-KGAIVFED---------GEEVEVPAVPAVKVVDTTGAGDAFRAGFLY 250 (279)
T ss_pred cCCC-----hHH------HhcCCCEEEEEECC-CceEEEEC---------CceEEccCcCcCCCcCCCCchHHHHHHHHH
Confidence 6642 111 12689999999995 89877643 445566543 555 5999999999999999
Q ss_pred HHccCCCCHHHHHHHHHHHHHHHHHH
Q 021714 242 WSNKYRDNLDIAAELAVSSLQALLQR 267 (308)
Q Consensus 242 ~l~~~g~~~~~A~~~A~a~~~~~i~~ 267 (308)
+|.+ |.++++|+++|+++++..+++
T Consensus 251 ~l~~-g~~l~~al~~a~~~Aa~~~~~ 275 (279)
T cd01942 251 GLLR-GYDLEESLRLGNLAASLKVER 275 (279)
T ss_pred HHHc-CCCHHHHHHHHHHHHHHHHcc
Confidence 9998 999999999999988887753
No 71
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.64 E-value=4.5e-15 Score=132.39 Aligned_cols=125 Identities=15% Similarity=0.136 Sum_probs=96.2
Q ss_pred HHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 021714 106 QVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAG 185 (308)
Q Consensus 106 ~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~d~~~~~~~l~~~g 185 (308)
++++.++++ + .+++|+..+.. .+.+++ +++.+|++++|++|+..+++ ++.+.++|
T Consensus 135 ~~~~~a~~~--~-~~~~d~~~~~~---------~~~~~~-~~~~~d~~~~n~~e~~~l~~------------~~~~~~~~ 189 (265)
T cd01947 135 EAIRKCRET--K-LVILQVTPRVR---------VDELNQ-ALIPLDILIGSRLDPGELVV------------AEKIAGPF 189 (265)
T ss_pred HHHHHHHHh--C-CeEeccCcccc---------chhHHH-HhhhCCEEEeCHHHHHHhhh------------HHHHHhcc
Confidence 455666654 3 57888854311 023444 78999999999999998874 34556779
Q ss_pred CCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Q 021714 186 PAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQAL 264 (308)
Q Consensus 186 ~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~l~~~g~~~~~A~~~A~a~~~~~ 264 (308)
++.|++|.|. +|+++... ++.++++.++++ +|++||||+|.|+|++++.+ |.++++|+++|+++++.+
T Consensus 190 ~~~viit~G~-~Ga~~~~~---------~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~-g~~~~~al~~a~~~Aa~~ 258 (265)
T cd01947 190 PRYLIVTEGE-LGAILYPG---------GRYNHVPAKKAKVPDSTGAGDSFAAGFIYGLLK-GWSIEEALELGAQCGAIC 258 (265)
T ss_pred CCEEEEEeCC-CCeEEEEC---------CeeEECCCCCCCCCCCCCchHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHH
Confidence 9999999995 89888753 345556555555 59999999999999999998 999999999999988877
Q ss_pred HH
Q 021714 265 LQ 266 (308)
Q Consensus 265 i~ 266 (308)
+.
T Consensus 259 v~ 260 (265)
T cd01947 259 VS 260 (265)
T ss_pred Hh
Confidence 75
No 72
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.59 E-value=2.6e-14 Score=129.33 Aligned_cols=163 Identities=20% Similarity=0.258 Sum_probs=118.5
Q ss_pred HHHHHHHHHHhCCCcccCEEEE-eccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhccc
Q 021714 71 QLCDLIEGLEANNLLYYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPV 149 (308)
Q Consensus 71 ~~~~~l~~l~~~~~~~~~~v~~-G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~ 149 (308)
....+++.+...-. .+++++. -| ..+. ..-+..+++.+|+. +++|.+|| .|+.| .....
T Consensus 129 ~~~~ll~~~~~~l~-~~~~vVLSDY-~KG~-L~~~q~~I~~ar~~--~~pVLvDP----Kg~Df-----------~~Y~G 188 (467)
T COG2870 129 DENKLLEKIKNALK-SFDALVLSDY-AKGV-LTNVQKMIDLAREA--GIPVLVDP----KGKDF-----------EKYRG 188 (467)
T ss_pred hHHHHHHHHHHHhh-cCCEEEEecc-cccc-chhHHHHHHHHHHc--CCcEEECC----CCcch-----------hhhCC
Confidence 44455555554321 3675544 23 2111 11255677778877 88999999 45433 24678
Q ss_pred ceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHH-HcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccCC-C
Q 021714 150 ASMLTPNQFEAEQLTGFRIGSEADGREACKILH-AAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIPA-Y 227 (308)
Q Consensus 150 ~diitpN~~E~~~L~g~~~~~~~d~~~~~~~l~-~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 227 (308)
+++||||..|++...|.... ++++.+..++|. +++...+++|.+. +|.-++.. ++..+++....++ |
T Consensus 189 AtLiTPN~~E~~~~vg~~~~-e~el~~~g~kL~~~~~L~alLvTRsE-~GMtL~~~---------~~~~h~pt~AkEVyD 257 (467)
T COG2870 189 ATLITPNLKEFEEAVGKCKS-EEELEERGQKLKEELDLSALLVTRSE-KGMTLFQE---------GKPLHFPARAKEVYD 257 (467)
T ss_pred CeecCCCHHHHHHHHccccc-HHHHHHHHHHHHHhhCcceEEEEecc-CCceeecC---------Ccccccchhheeeee
Confidence 99999999999999998654 467778788886 5788999999984 88766643 3336676555555 9
Q ss_pred CCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHH
Q 021714 228 FTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALL 265 (308)
Q Consensus 228 t~GaGD~f~a~l~~~l~~~g~~~~~A~~~A~a~~~~~i 265 (308)
.+||||+-.|.|+++|+. |.++++|+.+|++++.-++
T Consensus 258 VTGAGDTVIa~la~~laa-G~s~~eAc~lAN~AagiVV 294 (467)
T COG2870 258 VTGAGDTVIAVLAAALAA-GASLEEACELANAAAGIVV 294 (467)
T ss_pred ccCCCchHHHHHHHHHHc-CCCHHHHHHHhhhhcceEE
Confidence 999999999999999998 9999999999999876554
No 73
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=99.58 E-value=4e-14 Score=126.02 Aligned_cols=142 Identities=16% Similarity=0.116 Sum_probs=103.8
Q ss_pred cCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCC
Q 021714 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF 166 (308)
Q Consensus 87 ~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~ 166 (308)
.+.+.++.... ..++++.++++ ++++++||..+. .. +.+. .+++++|++++|..+
T Consensus 114 ~~~v~~~~~~~------~~~~~~~~~~~--~~~v~~D~~~~~------~~---~~~~-~~~~~~d~~~~~~~~------- 168 (260)
T PRK09813 114 YDIVHAAIWGH------AEDAFPQLHAA--GKLTAFDFSDKW------DS---PLWQ-TLVPHLDYAFASAPQ------- 168 (260)
T ss_pred CCEEEEeccch------HHHHHHHHHHc--CCeEEEEcCCCc------cH---HHHH-HhCCceeEEEecCCc-------
Confidence 66666653221 23456666665 789999995431 11 1233 488999999887542
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHHHcc
Q 021714 167 RIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNK 245 (308)
Q Consensus 167 ~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~l~~ 245 (308)
...++.++++.+.+.|++.|+||.|. +|+++... ++.++.+..+.+ +||+||||+|.|+|++++.+
T Consensus 169 ---~~~~~~~~~~~~~~~g~~~viit~G~-~Ga~~~~~---------~~~~~~~~~~~~~vDttGAGDaF~ag~i~~~~~ 235 (260)
T PRK09813 169 ---EDEFLRLKMKAIVARGAGVVIVTLGE-NGSIAWDG---------AQFWRQAPEPVTVVDTMGAGDSFIAGFLCGWLA 235 (260)
T ss_pred ---chHHHHHHHHHHHHcCCCEEEEEECC-CceEEEEC---------CEEEecCCcccCCCCCCCchHHHHHHHHHHHHc
Confidence 12356677888888999999999995 89888753 345555554455 59999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 021714 246 YRDNLDIAAELAVSSLQALLQR 267 (308)
Q Consensus 246 ~g~~~~~A~~~A~a~~~~~i~~ 267 (308)
|+++++|+++|+++++..+.+
T Consensus 236 -g~~~~~al~~a~~~aa~~~~~ 256 (260)
T PRK09813 236 -GMTLPQAMAQGTACAAKTIQY 256 (260)
T ss_pred -CCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999988877753
No 74
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=99.54 E-value=1.6e-13 Score=124.07 Aligned_cols=151 Identities=16% Similarity=0.091 Sum_probs=101.1
Q ss_pred ccCEEEE-eccCCHhHHHHHHHHHHHHHhcCC-----CceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHH
Q 021714 86 YYTHLLT-GYIGSVSFLNTILQVVEKLRSINP-----NLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFE 159 (308)
Q Consensus 86 ~~~~v~~-G~l~~~~~~~~~~~~l~~~k~~~~-----~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E 159 (308)
.++.+.+ |+.+ +...++++.++++.. .+++++|+.... +.++ .+++.+|++++|..|
T Consensus 127 ~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~-----------~~~~-~~l~~~di~~~n~~~ 189 (290)
T cd01939 127 QYGWIHFEGRNP-----DETLRMMQHIEEHNNRRPEIRITISVEVEKPR-----------EELL-ELAAYCDVVFVSKDW 189 (290)
T ss_pred cCCEEEEeccCH-----HHHHHHHHHHHHhcCcCCCcceEEEEEeccCc-----------hhhh-hHHhhCCEEEEEhHH
Confidence 3675554 5444 223455556655411 157888984321 1233 388899999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecc-cC-CCCCCccHHHHH
Q 021714 160 AEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPK-IP-AYFTGTGDLMTA 237 (308)
Q Consensus 160 ~~~L~g~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~t~GaGD~f~a 237 (308)
++.+ |.. +.++.... +.+...|++.|++|.|. +|+++... + +..++++.++ .+ +||+||||+|.|
T Consensus 190 ~~~~-~~~--~~~~~~~~-~~~~~~~~~~vvvt~G~-~G~~~~~~-----~---~~~~~~~~~~~~~vvDt~GAGDsf~a 256 (290)
T cd01939 190 AQSR-GYK--SPEECLRG-EGPRAKKAALLVCTWGD-QGAGALGP-----D---GEYVHSPAHKPIRVVDTLGAGDTFNA 256 (290)
T ss_pred HHhc-CcC--CHHHHHHh-hhhhccCCcEEEEEccc-CCeEEEcC-----C---CCEEEecCCCCCCcccCCCchHHHHH
Confidence 8865 542 33332221 22234578999999995 89877643 0 2344555433 33 699999999999
Q ss_pred HHHHHHccCCCC-HHHHHHHHHHHHHHHHHH
Q 021714 238 LLLGWSNKYRDN-LDIAAELAVSSLQALLQR 267 (308)
Q Consensus 238 ~l~~~l~~~g~~-~~~A~~~A~a~~~~~i~~ 267 (308)
+|++++.+ |.+ +++|+++|+++++..+++
T Consensus 257 gfl~~l~~-g~~~~~~a~~~a~a~aa~~i~~ 286 (290)
T cd01939 257 AVIYALNK-GPDDLSEALDFGNRVASQKCTG 286 (290)
T ss_pred HHHHHHHc-CCccHHHHHHHHHHHHHHHHhh
Confidence 99999998 995 999999999988887764
No 75
>PRK10565 putative carbohydrate kinase; Provisional
Probab=99.53 E-value=1.7e-12 Score=125.62 Aligned_cols=221 Identities=15% Similarity=0.132 Sum_probs=130.3
Q ss_pred cCCCCCCCeEEEEeccCccCccchhhcHHHHHh-cCCcceeeceEEec-cCCCCCCceeeeCCHHHHHHHHHHHHhCCCc
Q 021714 8 LALPSETGRVLSIQSHTVQGYVGNKSAVFPLQL-LGYDVDPIHSVQFS-NHTGYPTFKGQVLNGQQLCDLIEGLEANNLL 85 (308)
Q Consensus 8 ~~~~~~~~~Vl~i~~~~~~G~~G~~a~~~~l~~-~Gi~~~~v~t~~~~-~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~ 85 (308)
-+-+.++|+|+.|.|+..|.|+...+....++. .|.-+.+++..... -....+......++.+.+++++ .
T Consensus 248 ~shKg~~G~vliigGs~~~~GA~~Laa~aAlr~GaGlv~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~~~~~---~----- 319 (508)
T PRK10565 248 TSHKGDHGRLLIIGGDHGTAGAIRMAGEAALRSGAGLVRVLTRSENIAPLLTARPELMVHELTPDSLEESL---E----- 319 (508)
T ss_pred cCCCCCCCeEEEEECCCCCccHHHHHHHHHHHhCCCeEEEEeChhhHHHHhhcCceeEEecCCHhHHHHHh---h-----
Confidence 466788999999999998888887765555543 55433333211000 0001111111222222333332 2
Q ss_pred ccCEEEEec-cCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHh-hcccceEEcCCHHHHHHh
Q 021714 86 YYTHLLTGY-IGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREK-VVPVASMLTPNQFEAEQL 163 (308)
Q Consensus 86 ~~~~v~~G~-l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~-ll~~~diitpN~~E~~~L 163 (308)
.++++.+|+ ++..+.. .++++.+++. +.|+|+||. | +..+... ......|||||..|+++|
T Consensus 320 ~~~a~viGpGlg~~~~~---~~~~~~~~~~--~~P~VLDAd----a--------L~ll~~~~~~~~~~VLTPh~gE~~rL 382 (508)
T PRK10565 320 WADVVVIGPGLGQQEWG---KKALQKVENF--RKPMLWDAD----A--------LNLLAINPDKRHNRVITPHPGEAARL 382 (508)
T ss_pred cCCEEEEeCCCCCCHHH---HHHHHHHHhc--CCCEEEEch----H--------HHHHhhCccccCCeEECCCHHHHHHH
Confidence 378888887 4443322 2333444443 678999993 2 1112110 011257999999999999
Q ss_pred hCCCCCCH-HHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHH
Q 021714 164 TGFRIGSE-ADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLG 241 (308)
Q Consensus 164 ~g~~~~~~-~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~ 241 (308)
+|...... .+..+.++++.++....|++|+.. .++... ++...+.....+ ..++|+||+++|.+++
T Consensus 383 ~~~~~~~v~~~~~~~a~~~a~~~~~~vvlKG~~---~iI~~~---------~~~~~~~~~G~~~ma~~GsGDvLaGiIaa 450 (508)
T PRK10565 383 LGCSVAEIESDRLLSARRLVKRYGGVVVLKGAG---TVIAAE---------PDALAIIDVGNAGMASGGMGDVLSGIIGA 450 (508)
T ss_pred hCCChhhhhhhHHHHHHHHHHHhCCEEEEeCCC---cEEEcC---------CceEEEECCCCCCCCCCChHHHHHHHHHH
Confidence 99654332 245567777776655678888753 465532 222333333333 3669999999999999
Q ss_pred HHccCCCCHHHHHHHHHHHHHHHHH
Q 021714 242 WSNKYRDNLDIAAELAVSSLQALLQ 266 (308)
Q Consensus 242 ~l~~~g~~~~~A~~~A~a~~~~~i~ 266 (308)
++++ |.++.+|+..|+..-..+-+
T Consensus 451 lla~-g~~~~~Aa~~a~~lhg~Ag~ 474 (508)
T PRK10565 451 LLGQ-KLSPYDAACAGCVAHGAAAD 474 (508)
T ss_pred HHHc-CCCHHHHHHHHHHHHHHHHH
Confidence 9999 99999998877554434433
No 76
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=99.51 E-value=2.2e-13 Score=125.38 Aligned_cols=135 Identities=20% Similarity=0.127 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHh-----cCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCHHHHH
Q 021714 101 LNTILQVVEKLRS-----INPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGR 175 (308)
Q Consensus 101 ~~~~~~~l~~~k~-----~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~d~~ 175 (308)
.+...++++.++. + +..+++||+... -++|-.++ ..+. .+++++|+++||+.|+..+ +.++
T Consensus 134 ~e~~~~~~~~a~~v~~D~~--g~~~~~Dp~~~~-~~~~~~~~--~~~~-~~L~~iDil~~ne~Ea~~l------~~~~-- 199 (335)
T PLN02630 134 PETLERMVEICDVVVVDIQ--ALIRVFDPVDGT-VKLVKLEE--TGFY-DMLPRIGFLKASSEEALFI------DVEE-- 199 (335)
T ss_pred HHHHHHHHHHhhhheeccC--ceEEecCCcccc-cccchhhH--HHHH-HHHHhCCEEEecHHHHhhc------CHHH--
Confidence 3556667776765 3 678899997531 11221111 1233 3889999999999999876 1222
Q ss_pred HHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHHHccCCCCHHHHH
Q 021714 176 EACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNKYRDNLDIAA 254 (308)
Q Consensus 176 ~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~l~~~g~~~~~A~ 254 (308)
+. +. ..|+||.|. +|+++... ++.++++.++++ +|++||||+|.|+|++++.+ |.++++|+
T Consensus 200 -~~----~~--~~vvvt~G~-~G~~~~~~---------~~~~~~~~~~v~~vDttGAGDaF~agfi~~l~~-g~~~~~a~ 261 (335)
T PLN02630 200 -VR----QK--CCVIVTNGK-KGCRIYWK---------DGEMRVPPFPAIQVDPTGAGDSFLGGFVAGLVQ-GLAVPDAA 261 (335)
T ss_pred -Hc----cC--CEEEEEECC-CceEEEEC---------CeeEEeCCCCCCCCCCCChHHHHHHHHHHHHHc-CCCHHHHH
Confidence 11 22 379999995 89887653 345666655555 59999999999999999998 99999999
Q ss_pred HHHHHHHHHHHHH
Q 021714 255 ELAVSSLQALLQR 267 (308)
Q Consensus 255 ~~A~a~~~~~i~~ 267 (308)
++|+++++..+.+
T Consensus 262 ~~A~a~aa~~v~~ 274 (335)
T PLN02630 262 LLGNYFGSLAVEQ 274 (335)
T ss_pred HHHHHHHHHHhCc
Confidence 9999988777753
No 77
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=99.47 E-value=5.3e-13 Score=117.16 Aligned_cols=212 Identities=20% Similarity=0.154 Sum_probs=122.3
Q ss_pred EEEEeccCccCccchhhcHHHHHh-cCCcceeeceEEec-cCCCCCCceeeeCCH-HHHHHHHHHHHhCCCcccCEEEEe
Q 021714 17 VLSIQSHTVQGYVGNKSAVFPLQL-LGYDVDPIHSVQFS-NHTGYPTFKGQVLNG-QQLCDLIEGLEANNLLYYTHLLTG 93 (308)
Q Consensus 17 Vl~i~~~~~~G~~G~~a~~~~l~~-~Gi~~~~v~t~~~~-~~tg~~~~~g~~~~~-~~~~~~l~~l~~~~~~~~~~v~~G 93 (308)
|+.|.|+..|.++...+....++. .|.-+.+++..... ...-.+.....+++. +++ .+.+.++ ++|++.+|
T Consensus 1 VlvigGS~~~~GA~~Laa~aAlr~GaGlV~~~~~~~~~~~~~~~~Pe~m~~~~~~~~~~-~~~~~~~-----~~~av~iG 74 (242)
T PF01256_consen 1 VLVIGGSEGYPGAAILAARAALRSGAGLVTLATPESIAPVIASYSPEAMVSPLPSDEDV-EILELLE-----KADAVVIG 74 (242)
T ss_dssp EEEEE-BTSSHHHHHHHHHHHHHTT-SEEEEEECGCCHHHHHHHTTTSEEEETTHCCHH-HHHHHHC-----H-SEEEE-
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCCcEEEEEcHHHHHHHHhCCceeEEecccchhhh-hhHhhhc-----cCCEEEee
Confidence 789999999999988765444433 44433333211100 000111222344442 233 4444444 48999999
Q ss_pred c-cCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHH--hhcccceEEcCCHHHHHHhhCCCCCC
Q 021714 94 Y-IGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYRE--KVVPVASMLTPNQFEAEQLTGFRIGS 170 (308)
Q Consensus 94 ~-l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~--~ll~~~diitpN~~E~~~L~g~~~~~ 170 (308)
+ ++...... ++++.+.+. ..++|+|. +.+..+.+ .......|+|||..|+++|++.....
T Consensus 75 PGlg~~~~~~---~~~~~~~~~--~~p~VlDA------------DaL~~l~~~~~~~~~~~IlTPH~gE~~rL~~~~~~~ 137 (242)
T PF01256_consen 75 PGLGRDEETE---ELLEELLES--DKPLVLDA------------DALNLLAENPKKRNAPVILTPHPGEFARLLGKSVEI 137 (242)
T ss_dssp TT-SSSHHHH---HHHHHHHHH--CSTEEEEC------------HHHHCHHHCCCCSSSCEEEE-BHHHHHHHHTTTCHH
T ss_pred cCCCCchhhH---HHHHHHHhh--cceEEEeh------------HHHHHHHhccccCCCCEEECCCHHHHHHHhCCcccc
Confidence 8 55443322 233333333 45799998 22223332 13456789999999999999986532
Q ss_pred HHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHHHccCCCC
Q 021714 171 EADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGWSNKYRDN 249 (308)
Q Consensus 171 ~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~l~~~g~~ 249 (308)
.++..+.++++.++....|++|+.. .+++... ++.+ +.....+ ..+.|+||.++|.+.+.+++ +.+
T Consensus 138 ~~~~~~~a~~~a~~~~~~vvLKG~~---t~I~~p~--------~~~~-~n~~gn~~la~gGsGDvLaGii~~llaq-~~~ 204 (242)
T PF01256_consen 138 QEDRIEAAREFAKEYGAVVVLKGAV---TIIASPG--------GRVY-VNPTGNPGLATGGSGDVLAGIIAGLLAQ-GYD 204 (242)
T ss_dssp CCSHHHHHHHHHHHHTSEEEEESTS---SEEEEET--------SEEE-EE----GGGSSTTHHHHHHHHHHHHHHH-TSS
T ss_pred hhhHHHHHHHHHhhcCcEEEEeCCC---cEEEecC--------ccee-EeCCCCCCCCCCCcccHHHHHHHHHHHc-cCC
Confidence 2355677777775434588888753 5665431 3444 3322333 47899999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHH
Q 021714 250 LDIAAELAVSSLQALL 265 (308)
Q Consensus 250 ~~~A~~~A~a~~~~~i 265 (308)
+.+|+..|+- .+...
T Consensus 205 ~~~Aa~~av~-lHg~A 219 (242)
T PF01256_consen 205 PFEAACLAVY-LHGRA 219 (242)
T ss_dssp HHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHH-HHHHH
Confidence 9999987744 44433
No 78
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=3.6e-12 Score=114.25 Aligned_cols=158 Identities=16% Similarity=0.073 Sum_probs=103.3
Q ss_pred cCEEEEec-cC-CHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCC-ChhhHHHHHHhhcccceEEcCCHHHHHHh
Q 021714 87 YTHLLTGY-IG-SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYV-PSELVSVYREKVVPVASMLTPNQFEAEQL 163 (308)
Q Consensus 87 ~~~v~~G~-l~-~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~-~~~~~~~l~~~ll~~~diitpN~~E~~~L 163 (308)
..+++.|. .+ +..........++.+++ ++..+.+||+.+. .+|- .......+. .++..+|+++....|++.+
T Consensus 140 ak~~~~q~ei~~~~~~~s~~~~~~~~~~~--~g~~i~~~pn~~l--~l~~~~~~ne~e~~-~i~~~adv~~~s~~e~~fl 214 (330)
T KOG2855|consen 140 AKVFHCQSEILIEEPMRSLHIAAVKVAKN--AGPAIFYDPNLRL--PLWDSLEENESEIA-SIWNMADVIKVSSQELAFL 214 (330)
T ss_pred ccEEEEeeecCCcchhHHHHHhhhhhhhc--ccccccCCCCccc--cccccccccHHHHH-HHhhhhhcccccHHHHHHh
Confidence 45566654 22 22222222222445544 3555667998763 2442 111122233 3778999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC-CCCCCccHHHHHHHHHH
Q 021714 164 TGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP-AYFTGTGDLMTALLLGW 242 (308)
Q Consensus 164 ~g~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~GaGD~f~a~l~~~ 242 (308)
+|.. ..++ . +|...+.+.|+||.|. +|+.|++... .. .+.+...++ +|||||||+|+|+|+..
T Consensus 215 ~~~~---~~~~---~-~L~~~~~k~viVTlG~-kG~~y~tk~~-------~~-~~v~~~~V~~VDtTGAGDsFvgal~~~ 278 (330)
T KOG2855|consen 215 TGIE---DDKI---L-KLWHMKLKLVIVTLGE-KGCRYYTKDF-------KG-SHVPAFKVKAVDTTGAGDSFVGALAVQ 278 (330)
T ss_pred ccCc---cchH---H-HHhccCCCEEEEEeCC-CceEEEecCC-------CC-CCCCCcccccccCCCchHHHHHHHHHH
Confidence 9872 1233 3 6777777999999995 8998876421 12 345555565 69999999999999999
Q ss_pred HccCC--CC---HHHHHHHHHHHHHHHHH
Q 021714 243 SNKYR--DN---LDIAAELAVSSLQALLQ 266 (308)
Q Consensus 243 l~~~g--~~---~~~A~~~A~a~~~~~i~ 266 (308)
|.+ | .+ +++++++|++++...++
T Consensus 279 L~~-~~~~~~~~L~~~l~~A~a~~ai~v~ 306 (330)
T KOG2855|consen 279 LVR-GSLLPELSLEEALRFANACGAITVQ 306 (330)
T ss_pred Hhh-ccccchHHHHHHHHHHHHhhhHHhh
Confidence 998 8 66 88888888887666643
No 79
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=2.2e-11 Score=108.20 Aligned_cols=147 Identities=17% Similarity=0.207 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCCC-CCCHHHHHHHHHH
Q 021714 102 NTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFR-IGSEADGREACKI 180 (308)
Q Consensus 102 ~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~-~~~~~d~~~~~~~ 180 (308)
+.+..+.+.+.+.+ .+.++.- ...++.+...+.+.+ +++++|+|+.|+.|++.+.... +.+. ++.+.+..
T Consensus 175 ~ai~~v~qh~~e~~--r~~~lnl-----sapfI~q~~~~~l~~-v~~y~DiifgNe~EA~af~~~~~~~t~-dv~eia~~ 245 (343)
T KOG2854|consen 175 DAIRKVAQHAAENN--RVFTLNL-----SAPFISQFFKDALDK-VLPYADIIFGNEDEAAAFARAHGWETK-DVKEIALK 245 (343)
T ss_pred HHHHHHHHHHHHhc--chhheec-----cchhHHHHHHHHHHh-hcCcceEEEcCHHHHHHHHHhhCCccc-chHHHhhH
Confidence 34455556666652 2333332 124556666777775 8999999999999999997532 2221 22222222
Q ss_pred HH---H---cCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccC----CCCCCccHHHHHHHHHHHccCCCCH
Q 021714 181 LH---A---AGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIP----AYFTGTGDLMTALLLGWSNKYRDNL 250 (308)
Q Consensus 181 l~---~---~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~t~GaGD~f~a~l~~~l~~~g~~~ 250 (308)
+. + ..++.++||.|. +..+.... ++...++..+.+ +||+||||+|+++|++.|.+ |.++
T Consensus 246 ~~~~~k~~~~~~r~vvit~g~-~~~i~~~~---------~~v~~~~v~~~~~~~ivDtnGAGDaFvgGFl~~l~q-g~~l 314 (343)
T KOG2854|consen 246 LSALPKVNGTRPRTVVITQGP-DPVIVAED---------GKVTAYPVLPLPVEEIVDTNGAGDAFVGGFLSQLVQ-GKSL 314 (343)
T ss_pred hhccccccccccceEEEccCC-CceEEecC---------CceEEeccccccceeeeeCCCchHHHHHHHHHHHHc-CCCH
Confidence 22 2 235789999985 55554432 233334433332 59999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021714 251 DIAAELAVSSLQALLQRT 268 (308)
Q Consensus 251 ~~A~~~A~a~~~~~i~~t 268 (308)
+++++.+.-+++.+++..
T Consensus 315 ~~cir~g~~aa~~vi~~~ 332 (343)
T KOG2854|consen 315 EECIRAGSYAASHVIRRV 332 (343)
T ss_pred HHHHHHHHHHhhheeecc
Confidence 999999988888877643
No 80
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=7e-10 Score=99.10 Aligned_cols=221 Identities=19% Similarity=0.118 Sum_probs=125.9
Q ss_pred ccCCCCCCCeEEEEeccCccCccchhhcHHHHHh-cCCcceeece----EEeccCCCCCCceeeeCCHHHHHHHHHHHHh
Q 021714 7 SLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQL-LGYDVDPIHS----VQFSNHTGYPTFKGQVLNGQQLCDLIEGLEA 81 (308)
Q Consensus 7 ~~~~~~~~~~Vl~i~~~~~~G~~G~~a~~~~l~~-~Gi~~~~v~t----~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~ 81 (308)
.-+-+.+.|+|+.|.|+.-|+++...+....+.. .|.-....+. .+.+..++ .....+............+
T Consensus 25 ~~~HKg~~G~vliigG~~~y~GA~~laa~aAl~~GaglV~v~~~~~~~~~~~s~~Pe---~mv~~~~~~~~~~~~~~~~- 100 (284)
T COG0063 25 PDSHKGDYGRVLIIGGSRGYTGAPVLAALAALRAGAGLVSLASPPEAASALKSYLPE---LMVIEVEGKKLLEERELVE- 100 (284)
T ss_pred ccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHhCCCeEEEecchhhhhhHhhcCcc---eeEeecccchhhHHhhhhc-
Confidence 4466788999999999999998987765544433 4433222222 11111111 1112222112111111111
Q ss_pred CCCcccCEEEEec-cC-CHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHH--hhc-ccceEEcCC
Q 021714 82 NNLLYYTHLLTGY-IG-SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYRE--KVV-PVASMLTPN 156 (308)
Q Consensus 82 ~~~~~~~~v~~G~-l~-~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~--~ll-~~~diitpN 156 (308)
++|+|.+|+ ++ .++..+.+.++++..+ .++|+|+- + +..+.+ .+. ....|+|||
T Consensus 101 ----~~~avviGpGlG~~~~~~~~~~~~l~~~~-----~p~ViDAD----a--------L~~la~~~~~~~~~~~VlTPH 159 (284)
T COG0063 101 ----RADAVVIGPGLGRDAEGQEALKELLSSDL-----KPLVLDAD----A--------LNLLAELPDLLDERKVVLTPH 159 (284)
T ss_pred ----cCCEEEECCCCCCCHHHHHHHHHHHhccC-----CCEEEeCc----H--------HHHHHhCcccccCCcEEECCC
Confidence 488999986 44 3344455555544321 58999982 2 111111 122 233899999
Q ss_pred HHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccCC-CCCCccHH
Q 021714 157 QFEAEQLTGFRIGS-EADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIPA-YFTGTGDL 234 (308)
Q Consensus 157 ~~E~~~L~g~~~~~-~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~t~GaGD~ 234 (308)
..|+++|+|.++.+ ..+-.++++++.++....||+|+.. .++... +...+++....+. -+-|+||+
T Consensus 160 ~gEf~rL~g~~~~~~~~~r~~~a~~~a~~~~~vvVLKG~~---tvI~~~---------~g~~~~n~~G~~~ma~GGtGDv 227 (284)
T COG0063 160 PGEFARLLGTEVDEIEVDRLEAARELAAKYGAVVVLKGAV---TVIADP---------DGEVFVNPTGNPGMATGGTGDV 227 (284)
T ss_pred HHHHHHhcCCcccccccchHHHHHHHHHHcCCEEEEeCCC---CEEEcC---------CCcEEEcCCCCHHhccCcchHH
Confidence 99999999965533 2355677788877666789998753 566543 2222333222233 57899999
Q ss_pred HHHHHHHHHccCCC-CHHHHHHHHHHHHHHHHH
Q 021714 235 MTALLLGWSNKYRD-NLDIAAELAVSSLQALLQ 266 (308)
Q Consensus 235 f~a~l~~~l~~~g~-~~~~A~~~A~a~~~~~i~ 266 (308)
+++.+.+.|++ +. ++.+|+..| ++++....
T Consensus 228 LaGii~alLAq-~~~~~~~Aa~~g-~~~h~~ag 258 (284)
T COG0063 228 LAGIIGALLAQ-GPADPLEAAAAG-AWLHGRAG 258 (284)
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHH-HHHHHHHH
Confidence 99999999998 61 344555544 34444443
No 81
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=99.10 E-value=3.8e-09 Score=92.30 Aligned_cols=162 Identities=19% Similarity=0.144 Sum_probs=108.0
Q ss_pred cCE--EEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhc--ccceEEcCCHHHHHH
Q 021714 87 YTH--LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVV--PVASMLTPNQFEAEQ 162 (308)
Q Consensus 87 ~~~--v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll--~~~diitpN~~E~~~ 162 (308)
.++ +.+|.+. ++..+.+...++.++++ ++|+|+|||-... .+-..+..+ +|+ .++++|+.|..|...
T Consensus 50 a~al~iNiGTl~-~~~~~~m~~A~~~A~~~--~~PvVLDPVgvGa-----s~~R~~~~~-~LL~~~~~~vIrGN~sEI~a 120 (246)
T PF02110_consen 50 ADALVINIGTLT-DERIEAMKKAAKAANEL--GIPVVLDPVGVGA-----SKFRTEFAL-ELLNNYKPTVIRGNASEIAA 120 (246)
T ss_dssp TSEEEEESTTSS-HHHHHHHHHHHHHHHHT--T--EEEE-TTBTT-----BHHHHHHHH-HHHCHS--SEEEEEHHHHHH
T ss_pred cCEEEEECCCCC-HhHHHHHHHHHHHHHHc--CCCEEEeCcccCC-----cHHHHHHHH-HHHHhCCCcEEEeCHHHHHH
Confidence 454 4457654 66788889999999887 8999999985421 111122223 366 478999999999999
Q ss_pred hhCCCCC--------CHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEec-ccCCCCCCccH
Q 021714 163 LTGFRIG--------SEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIP-KIPAYFTGTGD 233 (308)
Q Consensus 163 L~g~~~~--------~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~GaGD 233 (308)
|.|.... +.++..+.++++.++....|++|+.. +++.++ .+.+.+..- ..-...+|+||
T Consensus 121 Lag~~~~~kGVDs~~~~~~~~~~a~~lA~k~~~vVvvTG~~---D~Isdg---------~~~~~i~nG~~~l~~itGtGC 188 (246)
T PF02110_consen 121 LAGEDSKAKGVDSGDSDEDAIEAAKQLAQKYNCVVVVTGEV---DYISDG---------NRVYRIPNGSPLLSKITGTGC 188 (246)
T ss_dssp HHTCCCCSCSSSSSCGSHHHHHHHHHHHHHTTSEEEEESSS---EEEEES---------SCEEEECSSSGGGGGSTTHHH
T ss_pred HhCcCCCCCCcCcCCcchHHHHHHHHHHHhcCCEEEEecCC---cEEECC---------CeEEEeCCCChHhcceeccch
Confidence 9986531 12346788888886655688888753 566543 344544321 11136799999
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 021714 234 LMTALLLGWSNKYRDNLDIAAELAVSSLQALLQRTVN 270 (308)
Q Consensus 234 ~f~a~l~~~l~~~g~~~~~A~~~A~a~~~~~i~~t~~ 270 (308)
++.+.++++++. ..+..+|...|+.+...+-+...+
T Consensus 189 ~lgaliaaf~av-~~d~~~aa~~a~~~~~~Age~A~~ 224 (246)
T PF02110_consen 189 MLGALIAAFLAV-AEDPLEAAVAAVALYGIAGELAAE 224 (246)
T ss_dssp HHHHHHHHHHCC-CSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHH
Confidence 999999999997 678888887787777777666654
No 82
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=99.05 E-value=2.8e-08 Score=86.08 Aligned_cols=161 Identities=18% Similarity=0.118 Sum_probs=111.6
Q ss_pred EEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcc--cceEEcCCHHHHHHhhCC
Q 021714 89 HLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVP--VASMLTPNQFEAEQLTGF 166 (308)
Q Consensus 89 ~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~--~~diitpN~~E~~~L~g~ 166 (308)
++.+|.|.. +..+.+...++.+++. +.|+|+|||-.. ..-+..+.. + +|+. ++++|+.|..|...|.|.
T Consensus 60 ~INIGTL~~-~~~~~m~~A~~~An~~--~~PvvLDPVgvg--At~~R~~~~---~-~LL~~~~~~~IrGN~sEI~~Lag~ 130 (265)
T COG2145 60 LINIGTLSA-ERIQAMRAAIKAANES--GKPVVLDPVGVG--ATKFRTKFA---L-ELLAEVKPAAIRGNASEIAALAGE 130 (265)
T ss_pred EEeeccCCh-HHHHHHHHHHHHHHhc--CCCEEecCccCC--chHHHHHHH---H-HHHHhcCCcEEeccHHHHHHHhcc
Confidence 466798874 5578888889999887 889999998652 111112222 2 2444 479999999999999975
Q ss_pred CC--------CCHHHHHHHHHHHHHcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEec-ccCCCCCCccHHHHH
Q 021714 167 RI--------GSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIP-KIPAYFTGTGDLMTA 237 (308)
Q Consensus 167 ~~--------~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~GaGD~f~a 237 (308)
.. ...++..+.++.+.+.-...|++|+.. +++.++ .+.+.+... +.-...+|+||.+.|
T Consensus 131 ~~~~kGVDa~~~~~~~~~~a~~~A~~~~~vvvvTG~v---D~Isdg---------~~~~~i~nG~pll~~ItGtGCllga 198 (265)
T COG2145 131 AGGGKGVDAGDGAADAIEAAKKAAQKYGTVVVVTGEV---DYISDG---------TRVVVIHNGSPLLGKITGTGCLLGA 198 (265)
T ss_pred cccccccccccchhhHHHHHHHHHHHhCcEEEEECCe---eEEEcC---------CeEEEEECCCcHHhhhhccccHHHH
Confidence 42 234577778887775444678888753 455543 344444322 111467999999999
Q ss_pred HHHHHHccCCCC-HHHHHHHHHHHHHHHHHHHHHh
Q 021714 238 LLLGWSNKYRDN-LDIAAELAVSSLQALLQRTVND 271 (308)
Q Consensus 238 ~l~~~l~~~g~~-~~~A~~~A~a~~~~~i~~t~~~ 271 (308)
..+++++. ..+ ..+|...|+.+...+-+...+.
T Consensus 199 v~aaF~av-~~d~~~~A~~~A~~~~~iAge~A~~~ 232 (265)
T COG2145 199 VVAAFLAV-EKDPLLDAAAEACAVYGIAGELAAER 232 (265)
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 677 6888888888877777777664
No 83
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=98.90 E-value=1.3e-07 Score=81.60 Aligned_cols=216 Identities=22% Similarity=0.245 Sum_probs=120.0
Q ss_pred CCCccccCCCCCCCeEEEEeccCccCccchhhcHHHHHhcCCcceeeceEEe--ccCCCCCC--ceeeeCCHHHHHHHHH
Q 021714 2 APPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQF--SNHTGYPT--FKGQVLNGQQLCDLIE 77 (308)
Q Consensus 2 ~~~~~~~~~~~~~~~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~~~~v~t~~~--~~~tg~~~--~~g~~~~~~~~~~~l~ 77 (308)
.||.+.---+.+.|||..|.|.--|-++-.-+++.+ ...|.+...+-+.-. ..-..|.. +.-+.+..++-....+
T Consensus 18 iP~L~~~kHKGq~GrvgViGGc~eYTGAPYFaa~sa-~~~GaDL~HiFCe~~Aa~vIKsYsPdLIVHP~l~~~~av~~i~ 96 (306)
T KOG3974|consen 18 IPPLLSNKHKGQSGRVGVIGGCLEYTGAPYFAAISA-LRVGADLSHIFCEPEAAVVIKSYSPDLIVHPVLDQENAVDIIE 96 (306)
T ss_pred cCCccCcccCCCccceEEEcccccccCccHHHHHHH-HHhccceeeeeechhHHHHHhhcCCceeecccccCCchHhHHH
Confidence 578887777889999999999776666766554333 346666555432110 00001110 1111222222223333
Q ss_pred HHHhCCCcccCEEEEec-cC-CHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhccc-ceEEc
Q 021714 78 GLEANNLLYYTHLLTGY-IG-SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPV-ASMLT 154 (308)
Q Consensus 78 ~l~~~~~~~~~~v~~G~-l~-~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~-~diit 154 (308)
.|-. +.+++++|. |+ ++.....+.++++.++++ ++|+|+|. .| +|.-++..+.+ +-.+ .-|+|
T Consensus 97 k~L~----RlhavVIGPGLGRdp~~~k~i~~iley~~~~--dvP~VIDa----DG-L~Lv~q~~e~l---~~~~~~viLT 162 (306)
T KOG3974|consen 97 KLLQ----RLHAVVIGPGLGRDPAILKEIAKILEYLRGK--DVPLVIDA----DG-LWLVEQLPERL---IGGYPKVILT 162 (306)
T ss_pred HHHh----heeEEEECCCCCCCHHHHHHHHHHHHHHhcC--CCcEEEcC----Cc-eEehhhchhhh---hccCceeeeC
Confidence 3322 366888987 55 555577888999999887 89999998 44 55433333321 1122 36899
Q ss_pred CCHHHHHHhhCCCCCCHHHHHHHHHHHH-HcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEEecccCCCCCCccH
Q 021714 155 PNQFEAEQLTGFRIGSEADGREACKILH-AAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGD 233 (308)
Q Consensus 155 pN~~E~~~L~g~~~~~~~d~~~~~~~l~-~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~GaGD 233 (308)
||.-|+.+|++....+. |-...+..|. +...-.|+-|+. .+.+.... .+......+.-...-.|=||
T Consensus 163 PNvvEFkRLcd~~l~~~-d~~~~~~~L~~~l~nv~vvqKG~---~D~ils~~--------~ev~~~s~eGs~kRcGGQGD 230 (306)
T KOG3974|consen 163 PNVVEFKRLCDAELDKV-DSHSQMQHLAAELMNVTVVQKGE---SDKILSPD--------SEVRVCSTEGSLKRCGGQGD 230 (306)
T ss_pred CcHHHHHHHHHHhhccc-cchHHHHHHHHHhcCeEEEEecC---CceeeCCC--------CeeEEccCCCCccccCCCcc
Confidence 99999999998643221 1122233333 223234455543 23333220 33433333322235689999
Q ss_pred HHHHHHHHHHc
Q 021714 234 LMTALLLGWSN 244 (308)
Q Consensus 234 ~f~a~l~~~l~ 244 (308)
.++|.++.++.
T Consensus 231 iLaGsla~fl~ 241 (306)
T KOG3974|consen 231 ILAGSLATFLS 241 (306)
T ss_pred hhhhHHHHHHH
Confidence 99998877653
No 84
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=98.38 E-value=8.5e-06 Score=69.88 Aligned_cols=106 Identities=23% Similarity=0.259 Sum_probs=67.1
Q ss_pred hhcccceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHH----HcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEEE
Q 021714 145 KVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILH----AAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIV 220 (308)
Q Consensus 145 ~ll~~~diitpN~~E~~~L~g~~~~~~~d~~~~~~~l~----~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 220 (308)
+|+...|++....+=++.+ |.. +.+++++.+. +.+++.|+|.--...|+-.... + ++.++..
T Consensus 181 ~l~am~DyVf~sK~~a~~~-gfk-----s~rea~~~l~~r~~~~~pkpv~I~~w~~eGA~~l~a-----d---g~yfev~ 246 (308)
T KOG2947|consen 181 QLFAMCDYVFVSKDVAKHL-GFK-----SPREACEGLYGRVPKGKPKPVLICPWASEGAGALGA-----D---GKYFEVD 246 (308)
T ss_pred HHhhcccEEEEEHHHHhhh-ccC-----CHHHHHHHHHhhcccCCCCcEEEeccccccccccCC-----C---CCEEecC
Confidence 3888999999888766665 332 2334444443 2235556655322244332221 1 3455554
Q ss_pred ecccC--CCCCCccHHHHHHHHHH-HccCCCCHHHHHHHHHHHHHHHH
Q 021714 221 IPKIP--AYFTGTGDLMTALLLGW-SNKYRDNLDIAAELAVSSLQALL 265 (308)
Q Consensus 221 ~~~~~--~~t~GaGD~f~a~l~~~-l~~~g~~~~~A~~~A~a~~~~~i 265 (308)
+.+-+ +|+.|+||+|+|+++++ +.+ ++++.||+++|++.++.-+
T Consensus 247 a~~ppkvVD~lg~~DtF~A~vIyA~lk~-~r~l~eAvdfg~rvas~Kl 293 (308)
T KOG2947|consen 247 AFKPPKVVDTLGAGDTFNAGVIYALLKQ-GRSLAEAVDFGNRVASKKL 293 (308)
T ss_pred CCCCccceeeccCCCcchHHHHHHHHHh-hhhHHHHHHHHHHhhhccc
Confidence 43222 69999999999999999 455 8999999999998765433
No 85
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=98.13 E-value=3.4e-05 Score=71.76 Aligned_cols=207 Identities=17% Similarity=0.168 Sum_probs=115.0
Q ss_pred ccCccch-hhcHHHHHhcCCcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCEEEEeccCCHhHHHH
Q 021714 25 VQGYVGN-KSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNT 103 (308)
Q Consensus 25 ~~G~~G~-~a~~~~l~~~Gi~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~v~~G~l~~~~~~~~ 103 (308)
++|+++. .++ .+.++|.++.++.++--.+...+. ...+. .+-+.-+++. ..+.+. +.+......
T Consensus 375 a~GGVarN~A~--a~~~lg~d~~liSavG~d~n~~~~----~~~~~-~~~e~~~dl~-----~a~~I~---~DsNiS~~~ 439 (614)
T KOG3009|consen 375 AMGGVARNHAD--ALARLGCDSVLISAVGDDNNGHFF----RQNSH-KIVESNEDLL-----SADFIL---LDSNISVPV 439 (614)
T ss_pred hccchhhhHHH--HHHHhcCCeeEEEEeccCCcchhh----hhhhh-hhhhhhhhhh-----cCCEEE---EcCCCCHHH
Confidence 5677774 433 588999999888877422211111 11111 1111222222 255554 334445667
Q ss_pred HHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhh-CCCC-------CCHHHHH
Q 021714 104 ILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT-GFRI-------GSEADGR 175 (308)
Q Consensus 104 ~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~-g~~~-------~~~~d~~ 175 (308)
+.++++ +|.+ +.+|+|.|--.+. ....++-.+....+.++||..|+-... +..+ .+.+.+.
T Consensus 440 Ma~il~-ak~~--k~~V~fEPTd~~k--------~~K~fk~l~v~~i~~i~PN~~Ell~a~k~~~v~~nps~~q~~~~~~ 508 (614)
T KOG3009|consen 440 MARILE-AKKH--KKQVWFEPTDIDK--------VKKVFKTLLVGAITAISPNANELLKAAKLCHVSVNPSVIQTADGVL 508 (614)
T ss_pred HHHHHH-hhhc--cCceEecCCCchh--------hhhhhhhcceeeEEeeCCCHHHHHHHhhcCceeeChhhhccchHHH
Confidence 778877 6655 6789999953321 112233222335799999999984332 2111 1122333
Q ss_pred HHHHHHH---HcCCCeEEEeeeecCCcEEEEeeeccCCCCCCcEEEE---Eeccc-C--CCCCCccHHHHHHHHHHHccC
Q 021714 176 EACKILH---AAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKI---VIPKI-P--AYFTGTGDLMTALLLGWSNKY 246 (308)
Q Consensus 176 ~~~~~l~---~~g~~~Vvit~g~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~-~--~~t~GaGD~f~a~l~~~l~~~ 246 (308)
+.++.+. .......++|... +|.+.... .+ .+..++ +.|.. . ++..|+||+|.+++.+.++.
T Consensus 509 ~~~~~~~~k~~~~~s~~I~tl~~-~G~l~~yr--~k-----~g~l~~~s~~p~~~~~n~vsvsgaGdsf~~g~i~~l~~- 579 (614)
T KOG3009|consen 509 ELIEKEKTKLLLNTSIFIVTLAN-KGSLVVYR--NK-----LGQLEFQSLPPPLQMNNVVSVSGAGDSFNSGVIAGLAH- 579 (614)
T ss_pred HHHHHHHHHhhcccceEEEEecc-CceEEEec--CC-----CCCcccccCCCcccccceeEeccCCcccccceeehhhc-
Confidence 3333332 2345667888864 77665432 11 112222 22221 1 36789999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 021714 247 RDNLDIAAELAVSSLQALLQ 266 (308)
Q Consensus 247 g~~~~~A~~~A~a~~~~~i~ 266 (308)
+.++.++++-+..+.+..+.
T Consensus 580 ~~~v~es~~gg~~~~ralls 599 (614)
T KOG3009|consen 580 NKTVVESLQGGQECARALLS 599 (614)
T ss_pred CcchHhhccccHHHHHHHHh
Confidence 99999999888655544443
No 86
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=94.82 E-value=0.5 Score=45.20 Aligned_cols=113 Identities=14% Similarity=0.105 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhCCCcccC-EEEEec--cCC--------HhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhh
Q 021714 70 QQLCDLIEGLEANNLLYYT-HLLTGY--IGS--------VSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSEL 138 (308)
Q Consensus 70 ~~~~~~l~~l~~~~~~~~~-~v~~G~--l~~--------~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~ 138 (308)
+++...++.+.. .+| +|++|+ +.. .+..+...+.++.+++.++++++-+--. .+.+.+.
T Consensus 198 e~f~~~l~e~~~----~~D~avlSG~q~l~d~y~dg~~~~e~l~~~~~~i~~l~~~~~~i~iH~E~A------s~~~~~i 267 (453)
T PRK14039 198 PAFEQYALEHAG----EMDGALISGFHLLLETYPDGSTYREKLEDSLAQLKWWKSKNEKLRIHAELG------HFASKEI 267 (453)
T ss_pred HHHHHHHHhhcc----CCCEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHHHhcCCCceEEEEec------CcccHHH
Confidence 345555544421 367 577786 311 1223344455555555566777766542 2345666
Q ss_pred HHHHHHhhcccceEEcCCHHHHHHhhCC---CC-----CCHHHHHHHHHHHH-HcCCCeEEEe
Q 021714 139 VSVYREKVVPVASMLTPNQFEAEQLTGF---RI-----GSEADGREACKILH-AAGPAKVVIT 192 (308)
Q Consensus 139 ~~~l~~~ll~~~diitpN~~E~~~L~g~---~~-----~~~~d~~~~~~~l~-~~g~~~Vvit 192 (308)
...+.+.++|.+|.+=.|+.|+..+... .. .+.+++.+++..|. +.|.+.+.|-
T Consensus 268 ~~~v~~~Ilp~VDSlGmNEqELa~l~~~~g~~~~~i~~~~~~~v~ea~~~l~~~~~le~l~vH 330 (453)
T PRK14039 268 ANSVFLILAGIVDSIGMNEDELAMLANLHGIPAEGILEMNAEAIGEAACQLASESGLQRLIIH 330 (453)
T ss_pred HHHHHHHhhcccccccCCHHHHHHHHHHcccchhhHhhcCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 6666666999999999999999999764 22 24678888888887 4688777663
No 87
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=92.43 E-value=2.9 Score=40.21 Aligned_cols=112 Identities=14% Similarity=0.196 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhCCCcccC-EEEEecc--CC--------HhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhh
Q 021714 70 QQLCDLIEGLEANNLLYYT-HLLTGYI--GS--------VSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSEL 138 (308)
Q Consensus 70 ~~~~~~l~~l~~~~~~~~~-~v~~G~l--~~--------~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~ 138 (308)
+++...++.+.. .+| +|++|+- -. ....+.+.+.++.+++.++++++-+--. .+.+.+.
T Consensus 210 eef~~~L~ei~~----~~D~avlSG~q~i~~~y~dg~~~~~~l~r~~~~i~~L~~~~~~i~iH~E~A------s~~~~~i 279 (463)
T PRK03979 210 DELKEFLPEIGK----MVDGAILSGYQGIKEEYSDGKTAEYYLKRAKEDIKLLKKKNKDIKIHVEFA------SIQNREI 279 (463)
T ss_pred HHHHHHHHhhcc----CCCEEEEechhhhhccccccccHHHHHHHHHHHHHHHhhCCCCceEEEEec------cccCHHH
Confidence 345555554422 377 6778863 22 1234555666677777777887776542 2345666
Q ss_pred HHHHHHhhcccceEEcCCHHHHHHhhC---CC--------CCCHHHHHHHHHHHHH-cCCCeEEE
Q 021714 139 VSVYREKVVPVASMLTPNQFEAEQLTG---FR--------IGSEADGREACKILHA-AGPAKVVI 191 (308)
Q Consensus 139 ~~~l~~~ll~~~diitpN~~E~~~L~g---~~--------~~~~~d~~~~~~~l~~-~g~~~Vvi 191 (308)
...+.+.++|.+|.+=.|+.|+..++. .. .+..+++.+++..|++ .|.+.|.+
T Consensus 280 r~~i~~~ilp~vDSlGmNE~ELa~l~~~lg~~~l~~~i~~~~~i~~v~~a~~~L~~~~~leri~v 344 (463)
T PRK03979 280 RKKIITYILPHVDSVGMDETEIANILNVLGYEELSERILKESRIEDVIEGAKILLDELNLERVQV 344 (463)
T ss_pred HHHHHHhhccccccccCCHHHHHHHHHHhcCcchhhhhhccccHHHHHHHHHHHHHHcCCCEEEE
Confidence 666666699999999999999997763 21 1235778888888874 67776554
No 88
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=91.16 E-value=4 Score=39.17 Aligned_cols=110 Identities=10% Similarity=0.062 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhCCCcccC-EEEEec--cCCHhHHHHHHHHHHHHHh-cCCCceEEEccccccCCCcCCChhhHHHHHHhh
Q 021714 71 QLCDLIEGLEANNLLYYT-HLLTGY--IGSVSFLNTILQVVEKLRS-INPNLIYVCDPVMGDEGKLYVPSELVSVYREKV 146 (308)
Q Consensus 71 ~~~~~l~~l~~~~~~~~~-~v~~G~--l~~~~~~~~~~~~l~~~k~-~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~l 146 (308)
++...++.+.. .+| +|++|+ +-.....+.+.+..+.++. +.+++++=+.-. .+.+.+..+.+.+ +
T Consensus 213 ef~~~l~ei~~----~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~~i~iH~EfA------s~~d~~~r~~i~~-i 281 (453)
T PRK14038 213 EFRERFEEIAK----KAELAIISGLQALTEENYREPFETVREHLKVLNERGIPAHLEFA------FTPDETVREEILG-L 281 (453)
T ss_pred HHHHHHHhhcc----CCCEEEEEchhhhccccHHHHHHHHHHHHHhcCcCCceEEEEee------ccchHHHHHHHHh-h
Confidence 44444444332 377 577786 3222222333333333333 123555544431 2345566667775 8
Q ss_pred cccceEEcCCHHHHHHhhC---C--------CCC--CHHHHHHHHHHHHH-cCCCeEEE
Q 021714 147 VPVASMLTPNQFEAEQLTG---F--------RIG--SEADGREACKILHA-AGPAKVVI 191 (308)
Q Consensus 147 l~~~diitpN~~E~~~L~g---~--------~~~--~~~d~~~~~~~l~~-~g~~~Vvi 191 (308)
+|.+|-+=.|+.|+..++. . ..+ +.+++.+++.+|++ .|.+.+.+
T Consensus 282 lp~vDSlGmNE~ELa~ll~~lg~~~l~~~i~~~~~~~~~~v~e~~~~L~~~~gleri~v 340 (453)
T PRK14038 282 LGKFYSVGLNEVELASIMEVMGEKTLAEKLLAKDPVDPIAVTEAMLKLAEKTGVKRIHF 340 (453)
T ss_pred CccccccccCHHHHHHHHHHhccchhhhhhhhcCccCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999875 1 112 56788889998884 68777665
No 89
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=89.27 E-value=8.3 Score=37.01 Aligned_cols=110 Identities=17% Similarity=0.196 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhCCCcccC-EEEEeccC--CH--------hHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhH
Q 021714 71 QLCDLIEGLEANNLLYYT-HLLTGYIG--SV--------SFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELV 139 (308)
Q Consensus 71 ~~~~~l~~l~~~~~~~~~-~v~~G~l~--~~--------~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~ 139 (308)
++++.+.++.. .+| +|++|+-. .. ...+...+.++.++++ +++++-+--. .+.+.+..
T Consensus 198 ~l~~~~~~i~~----~~d~~vlSG~q~m~~~y~dg~~~~~~~er~~~~i~~L~~~-~~i~iH~E~A------s~~~~~l~ 266 (446)
T TIGR02045 198 QLRKFLPEIGE----PVDGAILSGYQGIKEEYSDGKTAKYYLERAKEDIELLKKN-KDLKIHVEFA------SIQNREIR 266 (446)
T ss_pred HHHHhhhhhhh----cccEEEEEchhhhhhhccCCccHhHHHHHHHHHHHHHhhC-CCCeEEEEec------ccccHHHH
Confidence 45555554432 356 67788732 11 2345556666766553 6777766542 23456666
Q ss_pred HHHHHhhcccceEEcCCHHHHHHhh---CCC--------CCCHHHHHHHHHHHH-HcCCCeEEE
Q 021714 140 SVYREKVVPVASMLTPNQFEAEQLT---GFR--------IGSEADGREACKILH-AAGPAKVVI 191 (308)
Q Consensus 140 ~~l~~~ll~~~diitpN~~E~~~L~---g~~--------~~~~~d~~~~~~~l~-~~g~~~Vvi 191 (308)
..+.+.++|.+|.+=.|+.|+..++ |.. .+..+++.+++..|+ +.|.+.|.+
T Consensus 267 ~~i~~~ilp~vDSlGMNE~ELa~ll~~lg~~~l~~~i~~~~~i~~vi~a~~~l~~~~~leri~v 330 (446)
T TIGR02045 267 KKVVTNIFPHVDSVGMDEAEIANVLSVLGYDELSDRIFRYNRIEDLILGAKILLDELNLEVVQV 330 (446)
T ss_pred HHHHHhhccccccccCCHHHHHHHHHHhcCCchhhhhhccccHHHHHHHHHHHHHHcCCCEEEE
Confidence 6666669999999999999999987 321 123567888888887 457766655
No 90
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=87.44 E-value=13 Score=35.47 Aligned_cols=148 Identities=18% Similarity=0.240 Sum_probs=88.3
Q ss_pred CCCCeEEEEeccCccCccchhhcHHH-HHhcCCcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCEE
Q 021714 12 SETGRVLSIQSHTVQGYVGNKSAVFP-LQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHL 90 (308)
Q Consensus 12 ~~~~~Vl~i~~~~~~G~~G~~a~~~~-l~~~Gi~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~v 90 (308)
...|.|+..-|...+|.-=..+.+.. |...|..+..|.+.+ |+. ---+|++.+.+.+. .+
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~------~Rp-----AA~eQL~~La~q~~------v~-- 157 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADT------YRP-----AAIEQLKQLAEQVG------VP-- 157 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEeccc------CCh-----HHHHHHHHHHHHcC------Cc--
Confidence 45677888888886665544444444 677787765554322 111 01134444444332 22
Q ss_pred EEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHH--HHHhhCCCC
Q 021714 91 LTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFE--AEQLTGFRI 168 (308)
Q Consensus 91 ~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E--~~~L~g~~~ 168 (308)
..|.-....++++..+.++.+++...+ .+++|. .|.+-++++..+.+++ ...++.|++.= ...++|+
T Consensus 158 ~f~~~~~~~Pv~Iak~al~~ak~~~~D-vvIvDT----AGRl~ide~Lm~El~~----Ik~~~~P~E~llVvDam~GQ-- 226 (451)
T COG0541 158 FFGSGTEKDPVEIAKAALEKAKEEGYD-VVIVDT----AGRLHIDEELMDELKE----IKEVINPDETLLVVDAMIGQ-- 226 (451)
T ss_pred eecCCCCCCHHHHHHHHHHHHHHcCCC-EEEEeC----CCcccccHHHHHHHHH----HHhhcCCCeEEEEEecccch--
Confidence 334433456788889999999987434 578898 5656677776665543 34555665421 1233453
Q ss_pred CCHHHHHHHHHHHHH-cCCCeEEEee
Q 021714 169 GSEADGREACKILHA-AGPAKVVITS 193 (308)
Q Consensus 169 ~~~~d~~~~~~~l~~-~g~~~Vvit~ 193 (308)
++...++.+.+ .+...|++|-
T Consensus 227 ----dA~~~A~aF~e~l~itGvIlTK 248 (451)
T COG0541 227 ----DAVNTAKAFNEALGITGVILTK 248 (451)
T ss_pred ----HHHHHHHHHhhhcCCceEEEEc
Confidence 67777888874 5888899994
No 91
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=80.73 E-value=8.2 Score=37.21 Aligned_cols=85 Identities=20% Similarity=0.294 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhCCCcccC-EEEEec--cCC--------HhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhh
Q 021714 70 QQLCDLIEGLEANNLLYYT-HLLTGY--IGS--------VSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSEL 138 (308)
Q Consensus 70 ~~~~~~l~~l~~~~~~~~~-~v~~G~--l~~--------~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~ 138 (308)
+.+.+.++.+.. .+| +|++|+ +.. +...+.+.+.++.+++ +++++|-+--. .+.+++.
T Consensus 197 e~f~~~l~~~~~----~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~~l~~-~~~~~iH~E~A------s~~d~~l 265 (444)
T PF04587_consen 197 EEFFEALEEIAF----KPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIKLLKS-NPDIPIHLELA------SFADEEL 265 (444)
T ss_dssp HHHHHSHHHHHT----T-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHHHHH--HTT-EEEEE----------SSHHH
T ss_pred HHHHHHHHhhcc----CCCEEEEeccccchhhccchhHHHHHHHHHHHHHHhccC-CCCCceEEEec------cccCHHH
Confidence 344444444321 377 567786 332 1234444555566765 45788766542 3456677
Q ss_pred HHHHHHhhcccceEEcCCHHHHHHhhC
Q 021714 139 VSVYREKVVPVASMLTPNQFEAEQLTG 165 (308)
Q Consensus 139 ~~~l~~~ll~~~diitpN~~E~~~L~g 165 (308)
...+.+.++|++|.+=.|+.|+..|+.
T Consensus 266 ~~~i~~~ilp~vDSlGmNEqEL~~l~~ 292 (444)
T PF04587_consen 266 RKEILEKILPHVDSLGMNEQELANLLS 292 (444)
T ss_dssp HHHHHHHHGGGSSEEEEEHHHHHHHHH
T ss_pred HHHHHHHhhccccccccCHHHHHHHHH
Confidence 777776799999999999999998753
No 92
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=75.73 E-value=51 Score=28.32 Aligned_cols=74 Identities=11% Similarity=0.138 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccc-----eEEcCCHHHHHHhhCCCCCCHHHH
Q 021714 100 FLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVA-----SMLTPNQFEAEQLTGFRIGSEADG 174 (308)
Q Consensus 100 ~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~-----diitpN~~E~~~L~g~~~~~~~d~ 174 (308)
+.+.+.++++.+|+. ++.+.+|. +| +.+.+..+. +++.. |+--.+...-..++|.. .+.+
T Consensus 52 q~~fl~~l~~~~k~~--gi~~~leT----nG--~~~~~~~~~----l~~~~D~~l~DiK~~d~~~~~~~tG~~---~~~i 116 (213)
T PRK10076 52 QAEFATRFLQRLRLW--GVSCAIET----AG--DAPASKLLP----LAKLCDEVLFDLKIMDATQARDVVKMN---LPRV 116 (213)
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEC----CC--CCCHHHHHH----HHHhcCEEEEeeccCCHHHHHHHHCCC---HHHH
Confidence 356778899999987 88999998 34 233343332 44444 44455677777889864 3566
Q ss_pred HHHHHHHHHcCCCe
Q 021714 175 REACKILHAAGPAK 188 (308)
Q Consensus 175 ~~~~~~l~~~g~~~ 188 (308)
.+.++.+.+.|...
T Consensus 117 l~nl~~l~~~g~~v 130 (213)
T PRK10076 117 LENLRLLVSEGVNV 130 (213)
T ss_pred HHHHHHHHhCCCcE
Confidence 67777787777643
No 93
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=73.88 E-value=44 Score=30.14 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=20.2
Q ss_pred eEEEEeccCccCccchhhcHHHHHhcCCc
Q 021714 16 RVLSIQSHTVQGYVGNKSAVFPLQLLGYD 44 (308)
Q Consensus 16 ~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~ 44 (308)
+++.|.|.+ |+|-+.++..|+.+|+-
T Consensus 2 ~~vIiTGlS---GaGKs~Al~~lED~Gy~ 27 (284)
T PF03668_consen 2 ELVIITGLS---GAGKSTALRALEDLGYY 27 (284)
T ss_pred eEEEEeCCC---cCCHHHHHHHHHhcCee
Confidence 367777777 77777888889999964
No 94
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=65.09 E-value=32 Score=26.17 Aligned_cols=63 Identities=11% Similarity=0.217 Sum_probs=36.1
Q ss_pred HHHhcCCcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCEEEEeccCCHhHHHHHHHHHHHHHhcCC
Q 021714 37 PLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINP 116 (308)
Q Consensus 37 ~l~~~Gi~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~ 116 (308)
.|+..|+++..+ |..++.+.+.+.+.... +++|.+... .......+.++++.+|+..+
T Consensus 22 ~l~~~G~~V~~l---------------g~~~~~~~l~~~~~~~~------pdvV~iS~~-~~~~~~~~~~~i~~l~~~~~ 79 (119)
T cd02067 22 ALRDAGFEVIDL---------------GVDVPPEEIVEAAKEED------ADAIGLSGL-LTTHMTLMKEVIEELKEAGL 79 (119)
T ss_pred HHHHCCCEEEEC---------------CCCCCHHHHHHHHHHcC------CCEEEEecc-ccccHHHHHHHHHHHHHcCC
Confidence 378888875322 23455555544443322 776655443 23345667788888888765
Q ss_pred -CceEE
Q 021714 117 -NLIYV 121 (308)
Q Consensus 117 -~~~vv 121 (308)
+++++
T Consensus 80 ~~~~i~ 85 (119)
T cd02067 80 DDIPVL 85 (119)
T ss_pred CCCeEE
Confidence 55544
No 95
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=63.40 E-value=62 Score=24.35 Aligned_cols=35 Identities=14% Similarity=0.077 Sum_probs=23.1
Q ss_pred cCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEE
Q 021714 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVC 122 (308)
Q Consensus 87 ~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~ 122 (308)
+|.|.+.... ........++++.+|+.+|++++++
T Consensus 52 pd~V~iS~~~-~~~~~~~~~l~~~~k~~~p~~~iv~ 86 (121)
T PF02310_consen 52 PDVVGISVSM-TPNLPEAKRLARAIKERNPNIPIVV 86 (121)
T ss_dssp CSEEEEEESS-STHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred CcEEEEEccC-cCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 7866554422 2334566788888888888887764
No 96
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=62.77 E-value=1e+02 Score=28.54 Aligned_cols=154 Identities=12% Similarity=0.138 Sum_probs=83.8
Q ss_pred CCCCeEEEEeccCccCccchhhcHHH-HHhcCCcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCEE
Q 021714 12 SETGRVLSIQSHTVQGYVGNKSAVFP-LQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHL 90 (308)
Q Consensus 12 ~~~~~Vl~i~~~~~~G~~G~~a~~~~-l~~~Gi~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~v 90 (308)
+..+.|+.+-|...+|.-=..+.+.. +...|..+...-+- ...+.. -++|+.|.+.. .+++|
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~D--------------TFRAaA-iEQL~~w~er~--gv~vI 198 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGD--------------TFRAAA-IEQLEVWGERL--GVPVI 198 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecc--------------hHHHHH-HHHHHHHHHHh--CCeEE
Confidence 55688999988886665544444434 67788865433221 112222 34555565532 24444
Q ss_pred EEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHH--HHhhCCCC
Q 021714 91 LTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEA--EQLTGFRI 168 (308)
Q Consensus 91 ~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~--~~L~g~~~ 168 (308)
.+. ....+...+.+.++.+++++.+ .|++|.. |.+-......+.|+ +...++.|...++ +.|+..+.
T Consensus 199 -~~~-~G~DpAaVafDAi~~Akar~~D-vvliDTA----GRLhnk~nLM~EL~----KI~rV~~k~~~~ap~e~llvlDA 267 (340)
T COG0552 199 -SGK-EGADPAAVAFDAIQAAKARGID-VVLIDTA----GRLHNKKNLMDELK----KIVRVIKKDDPDAPHEILLVLDA 267 (340)
T ss_pred -ccC-CCCCcHHHHHHHHHHHHHcCCC-EEEEeCc----ccccCchhHHHHHH----HHHHHhccccCCCCceEEEEEEc
Confidence 333 4556677889999999998554 4778884 44444444444333 2334444443321 01211111
Q ss_pred CCHHHHHHHHHHHHH-cCCCeEEEee
Q 021714 169 GSEADGREACKILHA-AGPAKVVITS 193 (308)
Q Consensus 169 ~~~~d~~~~~~~l~~-~g~~~Vvit~ 193 (308)
.+-.+..+-++.+.+ -+...+++|-
T Consensus 268 ttGqnal~QAk~F~eav~l~GiIlTK 293 (340)
T COG0552 268 TTGQNALSQAKIFNEAVGLDGIILTK 293 (340)
T ss_pred ccChhHHHHHHHHHHhcCCceEEEEe
Confidence 112345555677764 4778888884
No 97
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=62.41 E-value=64 Score=27.25 Aligned_cols=93 Identities=15% Similarity=0.201 Sum_probs=53.7
Q ss_pred HHHhcCCcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCEEEEeccCCHhHHHHHHHHHHHHHhcCC
Q 021714 37 PLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINP 116 (308)
Q Consensus 37 ~l~~~Gi~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~ 116 (308)
.|+..|+++..+ |..++.+++.+.+.... +|+|-+..+. ......+.++++.+++..+
T Consensus 105 ~l~~~G~~vi~l---------------G~~~p~~~l~~~~~~~~------~d~v~lS~~~-~~~~~~~~~~i~~lr~~~~ 162 (201)
T cd02070 105 MLEANGFEVIDL---------------GRDVPPEEFVEAVKEHK------PDILGLSALM-TTTMGGMKEVIEALKEAGL 162 (201)
T ss_pred HHHHCCCEEEEC---------------CCCCCHHHHHHHHHHcC------CCEEEEeccc-cccHHHHHHHHHHHHHCCC
Confidence 478899876322 34566666655554433 7766554422 2335667888888888754
Q ss_pred --CceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhh
Q 021714 117 --NLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (308)
Q Consensus 117 --~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~ 164 (308)
+++|++= | ..+.++. .+ .+ .+|...+|..++-.+.
T Consensus 163 ~~~~~i~vG------G-~~~~~~~----~~-~~-GaD~~~~da~~av~~~ 199 (201)
T cd02070 163 RDKVKVMVG------G-APVNQEF----AD-EI-GADGYAEDAAEAVAIA 199 (201)
T ss_pred CcCCeEEEE------C-CcCCHHH----HH-Hc-CCcEEECCHHHHHHHH
Confidence 5555432 2 2233332 22 22 6888888888776653
No 98
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=60.76 E-value=70 Score=27.45 Aligned_cols=99 Identities=12% Similarity=0.074 Sum_probs=55.3
Q ss_pred HHHhcCCcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCEEEEeccCCHhHHHHHHHHHHHHHhcCC
Q 021714 37 PLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINP 116 (308)
Q Consensus 37 ~l~~~Gi~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~ 116 (308)
.|+..|+++.. -|.+++.+++-+.....+ +++|.+..+. ..+...+.++++.+++..+
T Consensus 111 ~l~~~G~~Vi~---------------LG~~vp~e~~v~~~~~~~------~~~V~lS~~~-~~~~~~~~~~i~~L~~~~~ 168 (213)
T cd02069 111 ILSNNGYEVID---------------LGVMVPIEKILEAAKEHK------ADIIGLSGLL-VPSLDEMVEVAEEMNRRGI 168 (213)
T ss_pred HHHhCCCEEEE---------------CCCCCCHHHHHHHHHHcC------CCEEEEccch-hccHHHHHHHHHHHHhcCC
Confidence 47889987543 245677767665555444 7766654433 2345667788888887644
Q ss_pred CceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhh
Q 021714 117 NLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (308)
Q Consensus 117 ~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~ 164 (308)
+++|++ |..-+++++.+.....-.-.+|....|..|+-.+.
T Consensus 169 ~~~i~v-------GG~~~~~~~~~~~~~~~~~gad~y~~da~~~v~~~ 209 (213)
T cd02069 169 KIPLLI-------GGAATSRKHTAVKIAPEYDGPVVYVKDASRALGVA 209 (213)
T ss_pred CCeEEE-------EChhcCHHHHhhhhccccCCCceEecCHHHHHHHH
Confidence 454432 12223333332210000126688888887776553
No 99
>PRK10867 signal recognition particle protein; Provisional
Probab=60.22 E-value=1.5e+02 Score=28.63 Aligned_cols=151 Identities=14% Similarity=0.187 Sum_probs=70.4
Q ss_pred CCCCeEEEEeccCccCccchhhcHHH-HHhc-CCcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCE
Q 021714 12 SETGRVLSIQSHTVQGYVGNKSAVFP-LQLL-GYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH 89 (308)
Q Consensus 12 ~~~~~Vl~i~~~~~~G~~G~~a~~~~-l~~~-Gi~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~ 89 (308)
...++|+.+.|..++|..=..+.+.. +... |..+..+.+-. |+ +... ++++.|.+.. ...+
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~------~R--------~aa~-eQL~~~a~~~--gv~v 159 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADV------YR--------PAAI-EQLKTLGEQI--GVPV 159 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccc------cc--------hHHH-HHHHHHHhhc--CCeE
Confidence 34568888888775555433333333 4455 77655444321 11 1111 2222333221 1333
Q ss_pred EEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHHhhCCCCC
Q 021714 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIG 169 (308)
Q Consensus 90 v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~ 169 (308)
+..+.- ..+.+...+.++.++....+ .|++|.. |.+-.++...+.+. ...+++.|+.. ++=.+..
T Consensus 160 ~~~~~~--~dp~~i~~~a~~~a~~~~~D-vVIIDTa----Grl~~d~~lm~eL~----~i~~~v~p~ev----llVlda~ 224 (433)
T PRK10867 160 FPSGDG--QDPVDIAKAALEEAKENGYD-VVIVDTA----GRLHIDEELMDELK----AIKAAVNPDEI----LLVVDAM 224 (433)
T ss_pred EecCCC--CCHHHHHHHHHHHHHhcCCC-EEEEeCC----CCcccCHHHHHHHH----HHHHhhCCCeE----EEEEecc
Confidence 322222 23345555666666654222 5888984 43334444444333 22333444432 1111112
Q ss_pred CHHHHHHHHHHHH-HcCCCeEEEeee
Q 021714 170 SEADGREACKILH-AAGPAKVVITSI 194 (308)
Q Consensus 170 ~~~d~~~~~~~l~-~~g~~~Vvit~g 194 (308)
+..+..+.++.+. ..+...+|+|.-
T Consensus 225 ~gq~av~~a~~F~~~~~i~giIlTKl 250 (433)
T PRK10867 225 TGQDAVNTAKAFNEALGLTGVILTKL 250 (433)
T ss_pred cHHHHHHHHHHHHhhCCCCEEEEeCc
Confidence 2345666667766 356778888853
No 100
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=58.12 E-value=1.3e+02 Score=29.49 Aligned_cols=96 Identities=18% Similarity=0.146 Sum_probs=51.1
Q ss_pred HHHhcC-CcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCEEEEeccCCHhHHHHHHHHHHHHHhcC
Q 021714 37 PLQLLG-YDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSIN 115 (308)
Q Consensus 37 ~l~~~G-i~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~ 115 (308)
.|+..| +++.++... ...++.+++.+.+ .+. ++|+|-+..+.. ......++++.+|+.+
T Consensus 31 ~L~~~G~~~V~iiD~~------------~~~~~~~~~~~~l---~~~---~pdvVgis~~t~--~~~~a~~~~~~~k~~~ 90 (497)
T TIGR02026 31 ALLDAGYHDVTFLDAM------------TGPLTDEKLVERL---RAH---CPDLVLITAITP--AIYIACETLKFARERL 90 (497)
T ss_pred HHHhcCCcceEEeccc------------ccCCCHHHHHHHH---Hhc---CcCEEEEecCcc--cHHHHHHHHHHHHHHC
Confidence 377788 566655421 1234444544433 322 278766544322 2445567788888888
Q ss_pred CCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHH
Q 021714 116 PNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAE 161 (308)
Q Consensus 116 ~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~ 161 (308)
|+++||+= +........+.+. -.+.+|++.-.+.|..
T Consensus 91 P~~~iV~G-------G~h~t~~~~~~l~--~~p~vD~Vv~GEGE~~ 127 (497)
T TIGR02026 91 PNAIIVLG-------GIHPTFMFHQVLT--EAPWIDFIVRGEGEET 127 (497)
T ss_pred CCCEEEEc-------CCCcCcCHHHHHh--cCCCccEEEeCCcHHH
Confidence 89887742 1111111111121 2467899888877743
No 101
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=56.83 E-value=33 Score=31.83 Aligned_cols=85 Identities=21% Similarity=0.174 Sum_probs=51.1
Q ss_pred HHHHHHHHHhCCCcccC-EEEEec----cCC-HhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHh
Q 021714 72 LCDLIEGLEANNLLYYT-HLLTGY----IGS-VSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREK 145 (308)
Q Consensus 72 ~~~~l~~l~~~~~~~~~-~v~~G~----l~~-~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ 145 (308)
++.+.+.++.- ++| +|++|. ..+ ++..+.+.++.+.+.+..+++++=+.- ..+.+.+....+...
T Consensus 227 ~E~f~~Al~~f---qPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~HlEl------aS~~~~~l~~~i~h~ 297 (478)
T KOG4184|consen 227 VEQFTDALKMF---QPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPVHLEL------ASMTNRELMSSIVHQ 297 (478)
T ss_pred HHHHHHHHHHh---CCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCchhhhH------hHHHHHHHHHHHHHH
Confidence 44444444432 378 567784 123 333445555555565554455544432 123455555556667
Q ss_pred hcccceEEcCCHHHHHHhhC
Q 021714 146 VVPVASMLTPNQFEAEQLTG 165 (308)
Q Consensus 146 ll~~~diitpN~~E~~~L~g 165 (308)
++|++|-+=.|+.|+..|..
T Consensus 298 VlPyVdSLGlNEQEL~fL~q 317 (478)
T KOG4184|consen 298 VLPYVDSLGLNEQELLFLTQ 317 (478)
T ss_pred hhhhccccCCCHHHHHHHHH
Confidence 89999999999999998874
No 102
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=56.48 E-value=1.2e+02 Score=27.09 Aligned_cols=77 Identities=21% Similarity=0.221 Sum_probs=42.2
Q ss_pred eEEEEeccCccCccchhhcHHHHHhcCCcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCEEEEec-
Q 021714 16 RVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGY- 94 (308)
Q Consensus 16 ~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~v~~G~- 94 (308)
+++.|.|.+ |+|-+.++..|+.+|+=|. ..+|++-+.++++-+..... +.+-|.++.
T Consensus 2 ~lvIVTGlS---GAGKsvAl~~lEDlGyycv------------------DNLPp~Llp~~~~~~~~~~~-~~~kvAv~iD 59 (286)
T COG1660 2 RLVIVTGLS---GAGKSVALRVLEDLGYYCV------------------DNLPPQLLPKLADLMLTLES-RITKVAVVID 59 (286)
T ss_pred cEEEEecCC---CCcHHHHHHHHHhcCeeee------------------cCCCHHHHHHHHHHHhhccc-CCceEEEEEe
Confidence 356677766 7777788888999996321 22444444445443322111 122222222
Q ss_pred cCCHhHHHHHHHHHHHHHhc
Q 021714 95 IGSVSFLNTILQVVEKLRSI 114 (308)
Q Consensus 95 l~~~~~~~~~~~~l~~~k~~ 114 (308)
+-+.+..+.+.+.+..++++
T Consensus 60 iRs~~~~~~l~~~l~~l~~~ 79 (286)
T COG1660 60 VRSREFFGDLEEVLDELKDN 79 (286)
T ss_pred cccchhHHHHHHHHHHHHhc
Confidence 44455566666777777765
No 103
>PRK08508 biotin synthase; Provisional
Probab=56.41 E-value=1.5e+02 Score=26.51 Aligned_cols=110 Identities=13% Similarity=0.076 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHhCCCcccCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhh
Q 021714 67 LNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKV 146 (308)
Q Consensus 67 ~~~~~~~~~l~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~l 146 (308)
++++++-+.++...+.+...+..+-.|.-.++...+.+.++++.+|+..|++.+..- .| +.+++.+..+++
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s-----~G--~~~~e~l~~Lk~-- 110 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIAC-----NG--TASVEQLKELKK-- 110 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEec-----CC--CCCHHHHHHHHH--
Confidence 577777776666554432112222244434455678889999999887555443211 12 234555554443
Q ss_pred cccceEEcCCHHHHHHhhCCCC--CCHHHHHHHHHHHHHcCC
Q 021714 147 VPVASMLTPNQFEAEQLTGFRI--GSEADGREACKILHAAGP 186 (308)
Q Consensus 147 l~~~diitpN~~E~~~L~g~~~--~~~~d~~~~~~~l~~~g~ 186 (308)
...|-+.-|.+=...++.... .+.++..+.++...+.|.
T Consensus 111 -aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi 151 (279)
T PRK08508 111 -AGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGL 151 (279)
T ss_pred -cCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCC
Confidence 346666666555555554322 345676677776667674
No 104
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=55.57 E-value=98 Score=26.10 Aligned_cols=64 Identities=16% Similarity=0.160 Sum_probs=37.7
Q ss_pred cchhhcHHHHHhcCCcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCEEEEeccCCHhHHHHHHHHH
Q 021714 29 VGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVV 108 (308)
Q Consensus 29 ~G~~a~~~~l~~~Gi~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l 108 (308)
.|...-...|+..|+++.. -|.+++.+.+-+.++... +|+|.+..+. ......+.+++
T Consensus 99 lG~~~v~~~l~~~G~~vi~---------------LG~~vp~e~~v~~~~~~~------pd~v~lS~~~-~~~~~~~~~~i 156 (197)
T TIGR02370 99 IGKNIVVTMLRANGFDVID---------------LGRDVPIDTVVEKVKKEK------PLMLTGSALM-TTTMYGQKDIN 156 (197)
T ss_pred HHHHHHHHHHHhCCcEEEE---------------CCCCCCHHHHHHHHHHcC------CCEEEEcccc-ccCHHHHHHHH
Confidence 4443333347888887543 245677666665555444 7866554432 22345567888
Q ss_pred HHHHhc
Q 021714 109 EKLRSI 114 (308)
Q Consensus 109 ~~~k~~ 114 (308)
+.+++.
T Consensus 157 ~~l~~~ 162 (197)
T TIGR02370 157 DKLKEE 162 (197)
T ss_pred HHHHHc
Confidence 888876
No 105
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=54.37 E-value=77 Score=24.34 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=34.1
Q ss_pred HHHhcCCcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCEEEEeccCCHhHHHHHHHHHHHHHhcC
Q 021714 37 PLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSIN 115 (308)
Q Consensus 37 ~l~~~Gi~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~ 115 (308)
-|+..|+++..+ |..++.+++-+...... +++|.+.+.. ....+.+.++++.+++..
T Consensus 22 ~l~~~G~~vi~l---------------G~~vp~e~~~~~a~~~~------~d~V~iS~~~-~~~~~~~~~~~~~L~~~~ 78 (122)
T cd02071 22 ALRDAGFEVIYT---------------GLRQTPEEIVEAAIQED------VDVIGLSSLS-GGHMTLFPEVIELLRELG 78 (122)
T ss_pred HHHHCCCEEEEC---------------CCCCCHHHHHHHHHHcC------CCEEEEcccc-hhhHHHHHHHHHHHHhcC
Confidence 378888875433 33455555444444333 7766655433 455667788888888763
No 106
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=53.89 E-value=1.1e+02 Score=24.23 Aligned_cols=56 Identities=14% Similarity=0.090 Sum_probs=32.9
Q ss_pred HHHhcCCcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCEEEEeccCCHhHHHHHHHHHHHHHhc
Q 021714 37 PLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSI 114 (308)
Q Consensus 37 ~l~~~Gi~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~ 114 (308)
.|+..|+++..+ |..++.+++-+...... +++|.+.++.. .....+.++++.+++.
T Consensus 26 ~lr~~G~eVi~L---------------G~~vp~e~i~~~a~~~~------~d~V~lS~~~~-~~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 26 ALTEAGFEVINL---------------GVMTSQEEFIDAAIETD------ADAILVSSLYG-HGEIDCRGLREKCIEA 81 (137)
T ss_pred HHHHCCCEEEEC---------------CCCCCHHHHHHHHHHcC------CCEEEEcCccc-cCHHHHHHHHHHHHhc
Confidence 378899876532 44566666554443322 67666655432 3355566777777766
No 107
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=48.31 E-value=55 Score=31.32 Aligned_cols=63 Identities=22% Similarity=0.436 Sum_probs=44.2
Q ss_pred eeeCCHHHHHHHHHHHHhCCCcccCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccc
Q 021714 64 GQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG 127 (308)
Q Consensus 64 g~~~~~~~~~~~l~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~ 127 (308)
|+..+++++-++++.+...+. .-...+|--++.....+.+-.+++..++....+.++|||--+
T Consensus 287 GP~~~p~~l~~L~~~LnP~~e-pGRlTLI~RmGa~kV~~~LP~li~aV~~~G~~VvW~cDPMHG 349 (443)
T TIGR01358 287 GPSMTPDELLRLIERLNPENE-PGRLTLISRMGADKIADKLPPLLRAVKAAGRRVVWVCDPMHG 349 (443)
T ss_pred CCCCCHHHHHHHHHHhCCCCC-CceEEEEeccCchHHHHhHHHHHHHHHHcCCceEEeecCCCC
Confidence 677888898889888876653 223455555666666777888888888874456677899543
No 108
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=45.95 E-value=1.4e+02 Score=24.91 Aligned_cols=95 Identities=22% Similarity=0.347 Sum_probs=44.6
Q ss_pred CeEEEEeccCccCccchh--hcHHH-H-HhcCCcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCEE
Q 021714 15 GRVLSIQSHTVQGYVGNK--SAVFP-L-QLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHL 90 (308)
Q Consensus 15 ~~Vl~i~~~~~~G~~G~~--a~~~~-l-~~~Gi~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~v 90 (308)
++++.-++|-.-|.+... ..... + +++|+++.-+ ||.. ...+. ..+.+++..+. .+++
T Consensus 2 k~~v~YGsSItqG~~Asrpg~~~~~~~aR~l~~~~iNL---------GfsG--~~~le-~~~a~~ia~~~------a~~~ 63 (178)
T PF14606_consen 2 KRWVAYGSSITQGACASRPGMAYPAILARRLGLDVINL---------GFSG--NGKLE-PEVADLIAEID------ADLI 63 (178)
T ss_dssp -EEEEEE-TT-TTTT-SSGGGSHHHHHHHHHT-EEEEE---------E-TC--CCS---HHHHHHHHHS--------SEE
T ss_pred CeEEEECChhhcCCCCCCCcccHHHHHHHHcCCCeEee---------eecC--ccccC-HHHHHHHhcCC------CCEE
Confidence 456666666666655521 12222 3 4588865422 1111 01233 35555555554 4544
Q ss_pred EE--ec-cCCHhHHHHHHHHHHHHHhcCCCceEE-Eccccc
Q 021714 91 LT--GY-IGSVSFLNTILQVVEKLRSINPNLIYV-CDPVMG 127 (308)
Q Consensus 91 ~~--G~-l~~~~~~~~~~~~l~~~k~~~~~~~vv-~Dpv~~ 127 (308)
.+ |. ...+.-.+.+..+++.+++.+|++||+ +.+...
T Consensus 64 ~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~ 104 (178)
T PF14606_consen 64 VLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVSPIPY 104 (178)
T ss_dssp EEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----
T ss_pred EEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCc
Confidence 44 43 334555778889999999999998876 455544
No 109
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=45.60 E-value=61 Score=31.22 Aligned_cols=63 Identities=19% Similarity=0.297 Sum_probs=44.0
Q ss_pred eeeCCHHHHHHHHHHHHhCCCcccCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccc
Q 021714 64 GQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG 127 (308)
Q Consensus 64 g~~~~~~~~~~~l~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~ 127 (308)
|+..+++++-++++.+...+. .-...+|--++.....+.+-.+++..++....+.++|||--+
T Consensus 307 GPs~~pdel~~L~~~LnP~~e-pGRlTLI~RmGa~kV~~~LP~Li~aV~~~G~~VvW~cDPMHG 369 (474)
T PLN02291 307 SDKMDPEELVKLIEILNPQNK-PGRLTIIVRMGAEKLRVKLPHLIRAVRRAGQIVTWVSDPMHG 369 (474)
T ss_pred CCCCCHHHHHHHHHHhCCCCC-CceEEEEeccchHHHHHHHHHHHHHHHHcCCceEEeecCCCC
Confidence 677888898888888876653 223555555665666777888888888874445667899543
No 110
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=42.54 E-value=2.2e+02 Score=24.53 Aligned_cols=154 Identities=13% Similarity=0.038 Sum_probs=73.3
Q ss_pred CCCeEEEEeccCccCccchhhcHHHHHhcCCcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccC-EEE
Q 021714 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYT-HLL 91 (308)
Q Consensus 13 ~~~~Vl~i~~~~~~G~~G~~a~~~~l~~~Gi~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~-~v~ 91 (308)
..++|..+..++..-|-|.... ..++...++|.+...-. .. ....+..++.+++-+.+............ +.+
T Consensus 3 ~~~~~~~~~~~~~~dg~g~~~~-~f~~gCnl~C~~C~~~~--~~---~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~ 76 (246)
T PRK11145 3 VIGRIHSFESCGTVDGPGIRFI-TFFQGCLMRCLYCHNRD--TW---DTHGGKEVTVEELMKEVVTYRHFMNASGGGVTA 76 (246)
T ss_pred ceEEEEEEEEEeeECCCCeEEE-EEECCCCCcCCCCCCHH--HC---CCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEE
Confidence 3566767776554445554322 12444445555443211 00 00123456666665555443321000112 334
Q ss_pred EeccCCH-hHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEc-----CCHHHHHHhhC
Q 021714 92 TGYIGSV-SFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLT-----PNQFEAEQLTG 165 (308)
Q Consensus 92 ~G~l~~~-~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diit-----pN~~E~~~L~g 165 (308)
+| +.+ .+.+.+.++++.+++. ++.+.++. +|.....++..+. +++..|.+. ++.+....+.|
T Consensus 77 sG--GEPll~~~~~~~l~~~~k~~--g~~i~l~T----NG~~~~~~~~~~~----ll~~~d~v~islk~~~~e~~~~~~g 144 (246)
T PRK11145 77 SG--GEAILQAEFVRDWFRACKKE--GIHTCLDT----NGFVRRYDPVIDE----LLDVTDLVMLDLKQMNDEIHQNLVG 144 (246)
T ss_pred eC--ccHhcCHHHHHHHHHHHHHc--CCCEEEEC----CCCCCcchHHHHH----HHHhCCEEEECCCcCChhhcccccC
Confidence 44 111 1345667888888876 77777776 4533212233332 344445432 23344455666
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC
Q 021714 166 FRIGSEADGREACKILHAAGPA 187 (308)
Q Consensus 166 ~~~~~~~d~~~~~~~l~~~g~~ 187 (308)
.+ .+.+.+..+.+.+.|.+
T Consensus 145 ~~---~~~~l~~i~~l~~~g~~ 163 (246)
T PRK11145 145 VS---NHRTLEFARYLAKRNQK 163 (246)
T ss_pred CC---hHHHHHHHHHHHhCCCc
Confidence 42 24455566667777654
No 111
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=42.27 E-value=1.1e+02 Score=23.25 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=34.1
Q ss_pred eeCCHHHHHHHHHHHHhCCCcccCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccc
Q 021714 65 QVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG 127 (308)
Q Consensus 65 ~~~~~~~~~~~l~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~ 127 (308)
..++.+.++.++++..+.+ .-.|+-|..++ .-.+....+-+..++..+...+.+||.+.
T Consensus 6 ~SMP~~~L~~l~~~a~~~~---~~~V~RG~~~g-~~~~t~~~~~~l~~~~~~~~~v~IdP~~F 64 (113)
T PF09673_consen 6 FSMPDASLRNLLKQAERAG---VVVVFRGFPDG-SFKPTAKAIQELLRKDDPCPGVQIDPRLF 64 (113)
T ss_pred CCCCHHHHHHHHHHHHhCC---cEEEEECCCCC-CHHHHHHHHHHHhhccCCCcceeEChhHH
Confidence 3567788899988888643 34566688765 32333333333333321124688999543
No 112
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=39.66 E-value=1.4e+02 Score=26.58 Aligned_cols=86 Identities=17% Similarity=0.239 Sum_probs=47.8
Q ss_pred EEEEeccCccCccchhhc-HHH--HHhcCCcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCEE-EE
Q 021714 17 VLSIQSHTVQGYVGNKSA-VFP--LQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHL-LT 92 (308)
Q Consensus 17 Vl~i~~~~~~G~~G~~a~-~~~--l~~~Gi~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~v-~~ 92 (308)
++++++-...|-.-++.+ ... |..+|+++..+.++- .. .+.+.+.+....+ ++|+| .+
T Consensus 6 iI~vG~ElL~G~ivdtNa~~la~~L~~~G~~v~~~~~Vg------------D~--~~~I~~~l~~a~~----r~D~vI~t 67 (255)
T COG1058 6 IIAVGDELLSGRIVDTNAAFLADELTELGVDLARITTVG------------DN--PDRIVEALREASE----RADVVITT 67 (255)
T ss_pred EEEEccceecCceecchHHHHHHHHHhcCceEEEEEecC------------CC--HHHHHHHHHHHHh----CCCEEEEC
Confidence 677777777777765442 222 888999888776541 11 2344455544443 36754 45
Q ss_pred eccCCHhHHHHHHHHHHHHHhcCCCceEEEccc
Q 021714 93 GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPV 125 (308)
Q Consensus 93 G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv 125 (308)
|=|+.. ..+...+.+.++- +.+.++|+.
T Consensus 68 GGLGPT-~DDiT~e~vAka~----g~~lv~~~~ 95 (255)
T COG1058 68 GGLGPT-HDDLTAEAVAKAL----GRPLVLDEE 95 (255)
T ss_pred CCcCCC-ccHhHHHHHHHHh----CCCcccCHH
Confidence 555422 1233344444432 557888874
No 113
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=38.58 E-value=2e+02 Score=27.75 Aligned_cols=72 Identities=21% Similarity=0.130 Sum_probs=43.6
Q ss_pred cC-EEEEeccC--C-----HhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHH
Q 021714 87 YT-HLLTGYIG--S-----VSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQF 158 (308)
Q Consensus 87 ~~-~v~~G~l~--~-----~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~ 158 (308)
+| +|++|+-. . +...+.+.++.+.++...+.+++-+--. .+.+++....+.+.++|.+|-+=.|+.
T Consensus 206 pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~E~A------s~~d~~l~~~i~~~ilp~VDSlGmNEq 279 (445)
T cd01938 206 PDLAVLSGLQMMEGQSFDEGTRKELLERVKSILEILPPLIPIHLELA------STVDEELREEILHEVVPYVDSLGLNEQ 279 (445)
T ss_pred CCEEEEechhhhcccCCChhhHHHHHHHHHHHHHhccccCcEEEEec------ccccHHHHHHHHHHhcccccccccCHH
Confidence 77 57778621 1 1223333344444444333344444321 234567666766679999999999999
Q ss_pred HHHHhh
Q 021714 159 EAEQLT 164 (308)
Q Consensus 159 E~~~L~ 164 (308)
|+..|+
T Consensus 280 EL~~l~ 285 (445)
T cd01938 280 ELANLL 285 (445)
T ss_pred HHHHHH
Confidence 999987
No 114
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=37.56 E-value=25 Score=29.91 Aligned_cols=47 Identities=28% Similarity=0.229 Sum_probs=36.0
Q ss_pred ccceEEcCCHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCCeEEEeee
Q 021714 148 PVASMLTPNQFEAEQLTGF-RIGSEADGREACKILHAAGPAKVVITSI 194 (308)
Q Consensus 148 ~~~diitpN~~E~~~L~g~-~~~~~~d~~~~~~~l~~~g~~~Vvit~g 194 (308)
.+..++.|++...+.+... +..=-.-+.+.++.|+++|++..++++|
T Consensus 66 ~Rl~llqp~~~qv~~~v~~~k~~lT~Gi~eLv~~L~~~~~~v~liSGG 113 (227)
T KOG1615|consen 66 ARLSLLQPLQVQVEQFVIKQKPTLTPGIRELVSRLHARGTQVYLISGG 113 (227)
T ss_pred HHHHHhcccHHHHHHHHhcCCCccCCCHHHHHHHHHHcCCeEEEEcCC
Confidence 4667899999888777643 3321236788999999999999999988
No 115
>PF01474 DAHP_synth_2: Class-II DAHP synthetase family; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2.5.1.54 from EC) catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I (see IPR006218 from INTERPRO) includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 3NUD_A 3KGF_A 2W19_A 3NUE_B 3PFP_A 2B7O_B 3RZI_A 3NV8_B 2W1A_A.
Probab=37.17 E-value=91 Score=29.82 Aligned_cols=63 Identities=19% Similarity=0.400 Sum_probs=35.6
Q ss_pred eeeCCHHHHHHHHHHHHhCCCcccCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccc
Q 021714 64 GQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG 127 (308)
Q Consensus 64 g~~~~~~~~~~~l~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~ 127 (308)
|+..+++++-++++.+..... .-...+|--++.....+.+-.+++..++....+.++|||--+
T Consensus 290 GP~~~~~~l~~l~~~LnP~~~-pGRltlI~RmGa~~v~~~LP~li~aV~~~g~~vvW~cDPMHG 352 (439)
T PF01474_consen 290 GPSMTPEELVELCDRLNPDNE-PGRLTLITRMGADKVRERLPPLIEAVQAAGHPVVWSCDPMHG 352 (439)
T ss_dssp -TT--HHHHHHHHHHHSTT---TTSEEEEE---TTTHHHHHHHHHHHHHTTT---EEEE-TSTT
T ss_pred CCCCCHHHHHHHHHHhCCCCC-CCeEEEEecCCcHHHHHHhHHHHHHHHHCCCceEEeccCCCC
Confidence 567778888888888876543 233555555565666677778888888764445677899543
No 116
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=36.65 E-value=3.5e+02 Score=25.11 Aligned_cols=113 Identities=13% Similarity=0.166 Sum_probs=59.9
Q ss_pred eeCCHHHHHHHHHHHHhCCCcccCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHH
Q 021714 65 QVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYRE 144 (308)
Q Consensus 65 ~~~~~~~~~~~l~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~ 144 (308)
..++.+++..+++.+.+... ..+.++| +.+....-+.++++.++++ +..+.+-. +|. +++++.++.+++
T Consensus 44 ~~~~~e~~~~ii~~~~~~g~--~~v~~~G--GEPll~~~~~~il~~~~~~--g~~~~i~T----NG~-ll~~~~~~~L~~ 112 (378)
T PRK05301 44 AELSTEEWIRVLREARALGA--LQLHFSG--GEPLLRKDLEELVAHAREL--GLYTNLIT----SGV-GLTEARLAALKD 112 (378)
T ss_pred CCCCHHHHHHHHHHHHHcCC--cEEEEEC--CccCCchhHHHHHHHHHHc--CCcEEEEC----CCc-cCCHHHHHHHHH
Confidence 35677788888887766442 2334444 1111112245778888775 55444433 453 355666666654
Q ss_pred hhccc--ceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCeE
Q 021714 145 KVVPV--ASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKV 189 (308)
Q Consensus 145 ~ll~~--~diitpN~~E~~~L~g~~~~~~~d~~~~~~~l~~~g~~~V 189 (308)
.-+.. ..+=.++.+.-..+.|.. .+.+.+.+.++.+.+.|.+..
T Consensus 113 ~g~~~v~iSldg~~~e~~d~irg~~-g~f~~~~~~i~~l~~~g~~v~ 158 (378)
T PRK05301 113 AGLDHIQLSFQDSDPELNDRLAGTK-GAFAKKLAVARLVKAHGYPLT 158 (378)
T ss_pred cCCCEEEEEecCCCHHHHHHHcCCC-chHHHHHHHHHHHHHCCCceE
Confidence 21221 122233444455565543 245666777777777776643
No 117
>smart00642 Aamy Alpha-amylase domain.
Probab=36.30 E-value=1.2e+02 Score=24.75 Aligned_cols=26 Identities=12% Similarity=0.272 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhcCCCceEEEcccccc
Q 021714 101 LNTILQVVEKLRSINPNLIYVCDPVMGD 128 (308)
Q Consensus 101 ~~~~~~~l~~~k~~~~~~~vv~Dpv~~~ 128 (308)
.+.+.++++.++++ ++.|++|.|+..
T Consensus 69 ~~d~~~lv~~~h~~--Gi~vilD~V~NH 94 (166)
T smart00642 69 MEDFKELVDAAHAR--GIKVILDVVINH 94 (166)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEECCCC
Confidence 46678999999987 999999998863
No 118
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=36.05 E-value=2.8e+02 Score=23.69 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=23.6
Q ss_pred cCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEcccccc
Q 021714 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD 128 (308)
Q Consensus 87 ~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~ 128 (308)
.+++++|+ +-....-.++++.+++. +.+|++|--..|
T Consensus 24 v~~iKvg~---~l~~~~g~~~i~~l~~~--~~~i~~DlK~~D 60 (216)
T cd04725 24 VCAVKVGL---ELFEAAGPEIVKELREL--GFLVFLDLKLGD 60 (216)
T ss_pred ccEEEECH---HHHHhcCHHHHHHHHHC--CCcEEEEeecCc
Confidence 67899997 11122334667777776 568999975544
No 119
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=34.56 E-value=4.1e+02 Score=25.29 Aligned_cols=75 Identities=8% Similarity=0.056 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhcCCCceEEEc-cccccCCCcCCChhhHHHHHHhhcc--cceEEcCCHHHHHHhhCCCCCCHHHHHHH
Q 021714 101 LNTILQVVEKLRSINPNLIYVCD-PVMGDEGKLYVPSELVSVYREKVVP--VASMLTPNQFEAEQLTGFRIGSEADGREA 177 (308)
Q Consensus 101 ~~~~~~~l~~~k~~~~~~~vv~D-pv~~~~g~~~~~~~~~~~l~~~ll~--~~diitpN~~E~~~L~g~~~~~~~d~~~~ 177 (308)
...+.++++.+|+. ++++.++ . +|..+.+++.++.+.+.-+. ..++=..|.+-...++|.+- .+.+.+.
T Consensus 88 ~~~l~eLl~~lk~~--gi~taI~~T----nG~~l~~~e~~~~L~~~gld~v~iSvka~dpe~h~kl~G~~~--a~~ILe~ 159 (404)
T TIGR03278 88 YPELEELTKGLSDL--GLPIHLGYT----SGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREWMKDPT--PEASLQC 159 (404)
T ss_pred CHHHHHHHHHHHhC--CCCEEEeCC----CCcccCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHhCCCC--HHHHHHH
Confidence 45677888999886 6666664 4 55556666666655441022 22343556677777888652 2456666
Q ss_pred HHHHHH
Q 021714 178 CKILHA 183 (308)
Q Consensus 178 ~~~l~~ 183 (308)
++.|.+
T Consensus 160 L~~L~e 165 (404)
T TIGR03278 160 LRRFCE 165 (404)
T ss_pred HHHHHh
Confidence 666665
No 120
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=33.89 E-value=2.3e+02 Score=25.27 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=42.4
Q ss_pred EEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCC-c-C-CChhhHHHH-HHhhcccceEEcCCHHH
Q 021714 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGK-L-Y-VPSELVSVY-REKVVPVASMLTPNQFE 159 (308)
Q Consensus 90 v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~-~-~-~~~~~~~~l-~~~ll~~~diitpN~~E 159 (308)
|.+|+-...+..+.+.++.+.+++. |.|++.=+-++...- . + .+.+..... +-..--.+|||+-|..+
T Consensus 118 Vy~Gse~e~~~i~~~~~v~~~a~~~--Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg 189 (265)
T COG1830 118 VYVGSETEREMIENISQVVEDAHEL--GMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTG 189 (265)
T ss_pred EecCCcchHHHHHHHHHHHHHHHHc--CCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCC
Confidence 6678877778888888999999887 889888776663211 0 1 233322211 11122378999987653
No 121
>TIGR03586 PseI pseudaminic acid synthase.
Probab=32.77 E-value=2.7e+02 Score=25.73 Aligned_cols=79 Identities=18% Similarity=0.213 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhh-cccceEEcCC---HHHHHHh--hCCCC------C
Q 021714 102 NTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKV-VPVASMLTPN---QFEAEQL--TGFRI------G 169 (308)
Q Consensus 102 ~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~l-l~~~diitpN---~~E~~~L--~g~~~------~ 169 (308)
+...++.+.+++. |+.++..| ++.+.++.+.+ + .+.-.|-..| ..=++.+ +|.++ .
T Consensus 77 e~~~~L~~~~~~~--Gi~~~stp---------fd~~svd~l~~-~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~ 144 (327)
T TIGR03586 77 EWHKELFERAKEL--GLTIFSSP---------FDETAVDFLES-LDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIA 144 (327)
T ss_pred HHHHHHHHHHHHh--CCcEEEcc---------CCHHHHHHHHH-cCCCEEEECCccccCHHHHHHHHhcCCcEEEECCCC
Confidence 3445555666665 88887777 23344444433 2 2222222222 2222222 34442 4
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEe
Q 021714 170 SEADGREACKILHAAGPAKVVIT 192 (308)
Q Consensus 170 ~~~d~~~~~~~l~~~g~~~Vvit 192 (308)
+.+++..++..+.+.|.+.|++-
T Consensus 145 t~~Ei~~Av~~i~~~g~~~i~Ll 167 (327)
T TIGR03586 145 TLEEIQEAVEACREAGCKDLVLL 167 (327)
T ss_pred CHHHHHHHHHHHHHCCCCcEEEE
Confidence 78899999999988888666553
No 122
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=32.14 E-value=3.5e+02 Score=23.70 Aligned_cols=122 Identities=15% Similarity=0.182 Sum_probs=67.8
Q ss_pred eCCHHHHHHHHHHHHhCCCcccCEEEEeccC----CHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHH
Q 021714 66 VLNGQQLCDLIEGLEANNLLYYTHLLTGYIG----SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSV 141 (308)
Q Consensus 66 ~~~~~~~~~~l~~l~~~~~~~~~~v~~G~l~----~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~ 141 (308)
.+++ ++..+++.+.+... +-++|-+|-++ ..+..+.+.+=++.+++. ++|+++..--++ +.-.....++.
T Consensus 76 ~iP~-e~~~~l~~L~~~l~-~e~VvAiGEiGLe~~t~~E~evf~~QL~LA~e~--dvPviVHTPr~n--K~e~t~~ildi 149 (254)
T COG1099 76 AIPP-ELEEVLEELEELLS-NEDVVAIGEIGLEEATDEEKEVFREQLELAREL--DVPVIVHTPRRN--KKEATSKILDI 149 (254)
T ss_pred CCCc-hHHHHHHHHHhhcc-cCCeeEeeecccccCCHHHHHHHHHHHHHHHHc--CCcEEEeCCCCc--chhHHHHHHHH
Confidence 3554 47788888877543 45788888765 444566666667778887 889988752111 22122333333
Q ss_pred HHHhhcccceEE--cCCHHHHHHhhCCCC-------CCHHHHHHHHHHHHHcCCCeEEEee
Q 021714 142 YREKVVPVASML--TPNQFEAEQLTGFRI-------GSEADGREACKILHAAGPAKVVITS 193 (308)
Q Consensus 142 l~~~ll~~~dii--tpN~~E~~~L~g~~~-------~~~~d~~~~~~~l~~~g~~~Vvit~ 193 (308)
+.+.-++-..++ -.|.+-...+++... ...-...++++...++|...+++.+
T Consensus 150 ~~~~~l~~~lvvIDH~N~etv~~vld~e~~vGlTvqPgKlt~~eAveIV~ey~~~r~ilnS 210 (254)
T COG1099 150 LIESGLKPSLVVIDHVNEETVDEVLDEEFYVGLTVQPGKLTVEEAVEIVREYGAERIILNS 210 (254)
T ss_pred HHHcCCChhheehhcccHHHHHHHHhccceEEEEecCCcCCHHHHHHHHHHhCcceEEEec
Confidence 332122222222 346666666665442 1112445666666677776666654
No 123
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=31.97 E-value=27 Score=29.41 Aligned_cols=39 Identities=8% Similarity=0.077 Sum_probs=29.7
Q ss_pred CCCCccHHHHHHHHHH-HccCCCCHHHHHHHHHHHHHHHHH
Q 021714 227 YFTGTGDLMTALLLGW-SNKYRDNLDIAAELAVSSLQALLQ 266 (308)
Q Consensus 227 ~t~GaGD~f~a~l~~~-l~~~g~~~~~A~~~A~a~~~~~i~ 266 (308)
-..|+|-+|.=+|+-. +-. +++++|+.++-..+++.++.
T Consensus 145 aIgGSGStfIYGf~D~~~r~-nMt~EE~~~fvk~Av~lAi~ 184 (224)
T KOG0174|consen 145 AIGGSGSTFIYGFCDANWRP-NMTLEECVRFVKNAVSLAIE 184 (224)
T ss_pred eeccCCceeeeeeehhhcCC-CCCHHHHHHHHHHHHHHHHh
Confidence 4579999999887765 554 89999999877666655554
No 124
>PLN02891 IMP cyclohydrolase
Probab=31.36 E-value=3.6e+02 Score=26.76 Aligned_cols=52 Identities=10% Similarity=0.166 Sum_probs=30.1
Q ss_pred HHHHHHHhCCCcccCEEEEeccCCHhHHH--------HH-------HHHHHHHHhcCCCceEEEccc
Q 021714 74 DLIEGLEANNLLYYTHLLTGYIGSVSFLN--------TI-------LQVVEKLRSINPNLIYVCDPV 125 (308)
Q Consensus 74 ~~l~~l~~~~~~~~~~v~~G~l~~~~~~~--------~~-------~~~l~~~k~~~~~~~vv~Dpv 125 (308)
.-++.+++.++..+|.|.+-.-|=++.+. .+ -.+++.+-+++..+.|++||.
T Consensus 102 ~h~~~l~~~~I~~IDlVvVNLYPF~~tv~~~~~~~ee~IEnIDIGGpsmlRAAAKN~~~V~Vv~dP~ 168 (547)
T PLN02891 102 HHMEALNEHGIGTIDVVVVNLYPFYDTVTSGGISFEDGVENIDIGGPAMIRAAAKNHKDVLVVVDPA 168 (547)
T ss_pred HHHHHHHHcCCCceeeEEEeccChHHHHhcCCCCHHHHHHhccCCcHHHHHHHHhCCCCeEEECCHH
Confidence 44455677666568877776555332221 11 234444545566889999994
No 125
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=30.30 E-value=3.8e+02 Score=23.54 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEeee
Q 021714 170 SEADGREACKILHAAGPAKVVITSI 194 (308)
Q Consensus 170 ~~~d~~~~~~~l~~~g~~~Vvit~g 194 (308)
+.++..+.+++.++.|+..|+|=..
T Consensus 132 ~~~~~i~~~~~~LeAGA~~ViiEar 156 (237)
T TIGR03849 132 TPDDRIKLINKDLEAGADYVIIEGR 156 (237)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEeeh
Confidence 3456667777778899999998764
No 126
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=28.28 E-value=1.6e+02 Score=25.48 Aligned_cols=51 Identities=25% Similarity=0.197 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCCcccCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEcccccc
Q 021714 71 QLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD 128 (308)
Q Consensus 71 ~~~~~l~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~ 128 (308)
+...+++.+.. ..+.+++|+ +-....=.++++.+++..|+.+|++|--+.|
T Consensus 17 ~A~~l~~~l~~----~v~~iKVG~---~L~~~~G~~~i~~lk~~~~~~~IflDlKl~D 67 (218)
T PRK13305 17 AAQRDVTLLKD----HVDIVEAGT---ILCLNEGLGAVKALREQCPDKIIVADWKVAD 67 (218)
T ss_pred HHHHHHHHccc----cCCEEEECH---HHHHHhCHHHHHHHHHhCCCCEEEEEeeccc
Confidence 33444444442 367899997 1111111345666676667888999964443
No 127
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=27.99 E-value=3.2e+02 Score=23.97 Aligned_cols=79 Identities=20% Similarity=0.277 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcC---CHHHHHHh--hCCCC------CC
Q 021714 102 NTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTP---NQFEAEQL--TGFRI------GS 170 (308)
Q Consensus 102 ~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitp---N~~E~~~L--~g~~~------~~ 170 (308)
+...++.+.++++ |+.++..| ++.+.++.+.+.=++.--|-.. |..=++.+ +|.++ .+
T Consensus 56 e~~~~L~~~~~~~--gi~f~stp---------fd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~st 124 (241)
T PF03102_consen 56 EQHKELFEYCKEL--GIDFFSTP---------FDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMST 124 (241)
T ss_dssp HHHHHHHHHHHHT--T-EEEEEE----------SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--
T ss_pred HHHHHHHHHHHHc--CCEEEECC---------CCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCC
Confidence 3445566667666 77666666 2334445443311221111111 22222222 34443 46
Q ss_pred HHHHHHHHHHHHHcCCCeEEE
Q 021714 171 EADGREACKILHAAGPAKVVI 191 (308)
Q Consensus 171 ~~d~~~~~~~l~~~g~~~Vvi 191 (308)
.+++.++.+.+.+.|...+++
T Consensus 125 l~EI~~Av~~~~~~~~~~l~l 145 (241)
T PF03102_consen 125 LEEIERAVEVLREAGNEDLVL 145 (241)
T ss_dssp HHHHHHHHHHHHHHCT--EEE
T ss_pred HHHHHHHHHHHHhcCCCCEEE
Confidence 788888888885555544443
No 128
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=27.96 E-value=2.5e+02 Score=23.12 Aligned_cols=41 Identities=10% Similarity=0.079 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhCCCcccCEEEEeccCCHhHHHHHHHHHHHHHhc
Q 021714 69 GQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSI 114 (308)
Q Consensus 69 ~~~~~~~l~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~ 114 (308)
++.++++.+++. ..|.|+..++..++++..+...++..+++
T Consensus 45 ~~~~~~~~~aia-----~ADii~~smlF~ed~v~~l~~~L~~~r~~ 85 (164)
T PF11965_consen 45 PEALEECEAAIA-----RADIIFGSMLFIEDHVRPLLPALEARRDH 85 (164)
T ss_pred hHHHHHHHHHHH-----hCCEEEeehhhhHHHHHHHHHHHHHHHcc
Confidence 456677777777 37877777788899999888888877654
No 129
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=27.67 E-value=4.8e+02 Score=23.92 Aligned_cols=113 Identities=12% Similarity=0.174 Sum_probs=57.8
Q ss_pred eeCCHHHHHHHHHHHHhCCCcccCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHH
Q 021714 65 QVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYRE 144 (308)
Q Consensus 65 ~~~~~~~~~~~l~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~ 144 (308)
..++.+++.++++.+.+... ..+.++| +.+--..-+.++++.++++ +..+.+-. +| .+.+++.++.+++
T Consensus 35 ~~l~~e~~~~ii~~~~~~g~--~~v~~~G--GEPll~~~~~~ii~~~~~~--g~~~~l~T----NG-~ll~~e~~~~L~~ 103 (358)
T TIGR02109 35 AELTTEEWTDVLTQAAELGV--LQLHFSG--GEPLARPDLVELVAHARRL--GLYTNLIT----SG-VGLTEARLDALAD 103 (358)
T ss_pred CCCCHHHHHHHHHHHHhcCC--cEEEEeC--ccccccccHHHHHHHHHHc--CCeEEEEe----CC-ccCCHHHHHHHHh
Confidence 45677788888888776542 2344444 1111112245777778775 55444433 44 3455666665554
Q ss_pred hhccc--ceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCeE
Q 021714 145 KVVPV--ASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKV 189 (308)
Q Consensus 145 ~ll~~--~diitpN~~E~~~L~g~~~~~~~d~~~~~~~l~~~g~~~V 189 (308)
.-+.. ..+=-++.+.-..+.|.+ .+.+.+.+.++.+.+.|.+..
T Consensus 104 ~g~~~v~iSldg~~~e~~d~~rg~~-g~f~~v~~~i~~l~~~g~~v~ 149 (358)
T TIGR02109 104 AGLDHVQLSFQGVDEALADRIAGYK-NAFEQKLAMARAVKAAGLPLT 149 (358)
T ss_pred CCCCEEEEeCcCCCHHHHHHhcCCc-cHHHHHHHHHHHHHhCCCceE
Confidence 11111 122223333344555532 134556667777777776543
No 130
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=27.25 E-value=1.4e+02 Score=18.99 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=21.3
Q ss_pred CCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCeEE
Q 021714 155 PNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVV 190 (308)
Q Consensus 155 pN~~E~~~L~g~~~~~~~d~~~~~~~l~~~g~~~Vv 190 (308)
...+|+..|+|... ...-++.|.++|...++
T Consensus 3 LT~~El~elTG~k~-----~~~Q~~~L~~~Gi~~~~ 33 (47)
T PF13986_consen 3 LTDEELQELTGYKR-----PSKQIRWLRRNGIPFVV 33 (47)
T ss_pred CCHHHHHHHHCCCC-----HHHHHHHHHHCCCeeEE
Confidence 46789999999752 23445677777876544
No 131
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=27.06 E-value=1.5e+02 Score=25.34 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhCCCcccCEEEEec-cCCHhHHHHHHHHHHHHHhcCCCceEEEcccccc
Q 021714 69 GQQLCDLIEGLEANNLLYYTHLLTGY-IGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD 128 (308)
Q Consensus 69 ~~~~~~~l~~l~~~~~~~~~~v~~G~-l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~ 128 (308)
.++...+++.+.. ..+++++|. +-...-.+.+.++++.+++. +.+|++|.-..|
T Consensus 12 ~~~a~~i~~~~~~----~v~~iKvG~~l~~~~G~~~l~~~i~~l~~~--~~~I~~D~K~~D 66 (226)
T PF00215_consen 12 LEEALRIADELGD----YVDIIKVGTPLFLAYGLEALPEIIEELKER--GKPIFLDLKLGD 66 (226)
T ss_dssp HHHHHHHHHHHGG----GSSEEEEEHHHHHHHCHHHHHHHHHHHHHT--TSEEEEEEEE-S
T ss_pred HHHHHHHHHHhcC----cceEEEEChHHHhcCChhhHHHHHHHHHHh--cCCEeeeeeecc
Confidence 3455666666664 378999996 32222233678888999887 589999985554
No 132
>PRK15447 putative protease; Provisional
Probab=26.89 E-value=4.8e+02 Score=23.59 Aligned_cols=115 Identities=10% Similarity=0.071 Sum_probs=61.7
Q ss_pred eCCHHHHHHHHHHHHhCCCcccCEEEEeccC----CHhHHHHHHHHHHHHHhcCCCceEEEc-cccccCCCcCCChhhHH
Q 021714 66 VLNGQQLCDLIEGLEANNLLYYTHLLTGYIG----SVSFLNTILQVVEKLRSINPNLIYVCD-PVMGDEGKLYVPSELVS 140 (308)
Q Consensus 66 ~~~~~~~~~~l~~l~~~~~~~~~~v~~G~l~----~~~~~~~~~~~l~~~k~~~~~~~vv~D-pv~~~~g~~~~~~~~~~ 140 (308)
.+|...++.+...+.+.. +|+|++|.-. ..-..+.+.+.++.+++. |.+|++= |.+ ...++-.+
T Consensus 11 ~~p~~~~~~~~~~~~~~g---aDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~--gkkvyva~p~i------~~~~~e~~ 79 (301)
T PRK15447 11 YWPKETVRDFYQRAADSP---VDIVYLGETVCSKRRELKVGDWLELAERLAAA--GKEVVLSTLAL------VEAPSELK 79 (301)
T ss_pred CCCCCCHHHHHHHHHcCC---CCEEEECCccCCCccCCCHHHHHHHHHHHHHc--CCEEEEEeccc------ccCHHHHH
Confidence 455567777777776543 7999998421 123456777888888887 6666653 321 11111223
Q ss_pred HHHHhhcc-cce-EEcCCHHHHHHhh--CCCCC--CHHH--HHHHHHHHHHcCCCeEEEe
Q 021714 141 VYREKVVP-VAS-MLTPNQFEAEQLT--GFRIG--SEAD--GREACKILHAAGPAKVVIT 192 (308)
Q Consensus 141 ~l~~~ll~-~~d-iitpN~~E~~~L~--g~~~~--~~~d--~~~~~~~l~~~g~~~Vvit 192 (308)
.+.+ ++. ..+ |+.-|..++..+- +.++. +.-. -..+++.+.++|...+++.
T Consensus 80 ~l~~-~l~~~~~~v~v~d~g~l~~~~e~~~~l~~d~~lni~N~~a~~~l~~~G~~rv~ls 138 (301)
T PRK15447 80 ELRR-LVENGEFLVEANDLGAVRLLAERGLPFVAGPALNCYNAATLALLARLGATRWCMP 138 (301)
T ss_pred HHHH-HHhcCCCEEEEeCHHHHHHHHhcCCCEEEecccccCCHHHHHHHHHcCCcEEEEC
Confidence 3333 332 334 5666888777665 44321 0000 0233455556676666554
No 133
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=26.55 E-value=3.9e+02 Score=22.43 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=37.2
Q ss_pred CHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhccc--ceEEcCCHHHHHHhhCCCCCCHHHH
Q 021714 97 SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPV--ASMLTPNQFEAEQLTGFRIGSEADG 174 (308)
Q Consensus 97 ~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~--~diitpN~~E~~~L~g~~~~~~~d~ 174 (308)
.+...+.+.+.++.+++. ++..|++=.. . + +.+....+.++.. ...++| |++. +.
T Consensus 70 ~e~~~~~l~~~l~~~~~~--g~~~vv~G~i------~-s-d~~~~~~e~~~~~~gl~~~~P-------LW~~------~~ 126 (194)
T cd01994 70 EEDEVEDLKELLRKLKEE--GVDAVVFGAI------L-S-EYQRTRVERVCERLGLEPLAP-------LWGR------DQ 126 (194)
T ss_pred chHHHHHHHHHHHHHHHc--CCCEEEECcc------c-c-HHHHHHHHHHHHHcCCEEEec-------ccCC------CH
Confidence 344455566666666554 4555555211 1 1 1122222223332 345555 5554 23
Q ss_pred HHHHHHHHHcCCCeEEEee
Q 021714 175 REACKILHAAGPAKVVITS 193 (308)
Q Consensus 175 ~~~~~~l~~~g~~~Vvit~ 193 (308)
++.++.+.+.|.+.++++-
T Consensus 127 ~~ll~e~~~~g~~~~iv~v 145 (194)
T cd01994 127 EELLREMIEAGFKAIIIKV 145 (194)
T ss_pred HHHHHHHHHcCCeEEEEEe
Confidence 4566677777777776664
No 134
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=26.53 E-value=2.7e+02 Score=26.63 Aligned_cols=61 Identities=11% Similarity=0.146 Sum_probs=38.4
Q ss_pred eeeCCHHHHHHHHHHHHhCCCcccCEEEE-e---ccCCHhHHHHHHHHHHHHHhcCCCceEEEccccc
Q 021714 64 GQVLNGQQLCDLIEGLEANNLLYYTHLLT-G---YIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG 127 (308)
Q Consensus 64 g~~~~~~~~~~~l~~l~~~~~~~~~~v~~-G---~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~ 127 (308)
|..++.+.+++.++.-.+.+. +...|++ - .|+..-+.+.+..++..++.+ ++.+|.|=++.
T Consensus 205 ~f~itv~alE~A~~~A~~~~~-kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~k--niHvI~DEIya 269 (471)
T KOG0256|consen 205 GFQITVEALEAALNQARKLGL-KVKGVLITNPSNPLGTTLSPEELISLLNFASRK--NIHVISDEIYA 269 (471)
T ss_pred CccccHHHHHHHHHHHHHhCC-ceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhc--ceEEEeehhhc
Confidence 456667777777766655543 3454443 2 345444566666777777766 78899997764
No 135
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=26.20 E-value=76 Score=23.94 Aligned_cols=32 Identities=22% Similarity=0.162 Sum_probs=25.3
Q ss_pred CCCCCccHHHHHHHHHHHccCCCCHHHHHHHH
Q 021714 226 AYFTGTGDLMTALLLGWSNKYRDNLDIAAELA 257 (308)
Q Consensus 226 ~~t~GaGD~f~a~l~~~l~~~g~~~~~A~~~A 257 (308)
.|-+|-||..-|.+++++.++-.+.+||++.-
T Consensus 53 ~dkh~kGd~aEA~iAyAWLeg~it~eEaveil 84 (120)
T PF11469_consen 53 TDKHGKGDIAEALIAYAWLEGKITIEEAVEIL 84 (120)
T ss_dssp GGCCGHHHHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred ccccCccHHHHHHHHHHHHhccccHHHHHHHH
Confidence 48899999999999999998236888888643
No 136
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=26.10 E-value=2.6e+02 Score=21.25 Aligned_cols=61 Identities=11% Similarity=0.023 Sum_probs=32.6
Q ss_pred ccCEEEEec-cCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHH
Q 021714 86 YYTHLLTGY-IGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFE 159 (308)
Q Consensus 86 ~~~~v~~G~-l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E 159 (308)
++|.|.+.. ..+. ....++++.+|+..|++++++= ....... .+.+ ...+.+|++...+.|
T Consensus 39 ~pdiv~~S~~~~~~---~~~~~~~~~ik~~~p~~~iv~G-------G~~~t~~-p~~~--~~~~~~D~vv~GEgE 100 (127)
T cd02068 39 KPDVVGISLMTSAI---YEALELAKIAKEVLPNVIVVVG-------GPHATFF-PEEI--LEEPGVDFVVIGEGE 100 (127)
T ss_pred CCCEEEEeeccccH---HHHHHHHHHHHHHCCCCEEEEC-------CcchhhC-HHHH--hcCCCCCEEEECCcH
Confidence 377655443 3332 2566777888887777777642 1111100 1111 134677888776655
No 137
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=25.97 E-value=1.8e+02 Score=25.68 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=34.1
Q ss_pred CccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 021714 230 GTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQRTVNDYVTAGF 277 (308)
Q Consensus 230 GaGD~f~a~l~~~l~~~g~~~~~A~~~A~a~~~~~i~~t~~~~~~~~~ 277 (308)
-.||.|-+.+..+-.. |.++++|++.++.-...-..+.-+.....|.
T Consensus 184 ElGDlLFalvnlAr~~-giDpE~ALr~a~~KF~~Rf~~~E~~~~~~g~ 230 (248)
T TIGR00444 184 EMGDLLFATVNLARHL-KTDAEIALQKANEKFERRFREVERIVAARGL 230 (248)
T ss_pred HHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3699999988888887 8999999999987655555544443334453
No 138
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=25.60 E-value=3.7e+02 Score=21.94 Aligned_cols=76 Identities=13% Similarity=0.160 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcC----CHHHHHHhhCCCCCCHHHHHHHHH
Q 021714 104 ILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTP----NQFEAEQLTGFRIGSEADGREACK 179 (308)
Q Consensus 104 ~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitp----N~~E~~~L~g~~~~~~~d~~~~~~ 179 (308)
+.++++.+++. +..+.+.++ |. .++.++.+.+. ...+.+.. ..++...+.|.+....+++.+.++
T Consensus 79 l~~li~~~~~~--g~~v~i~TN----g~---~~~~l~~l~~~--g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~ 147 (191)
T TIGR02495 79 LPDFLRKVREL--GFEVKLDTN----GS---NPRVLEELLEE--GLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLE 147 (191)
T ss_pred HHHHHHHHHHC--CCeEEEEeC----CC---CHHHHHHHHhc--CCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHH
Confidence 56777778775 666777763 32 23444444321 11232211 244566777764322237778888
Q ss_pred HHHHcCCCeEE
Q 021714 180 ILHAAGPAKVV 190 (308)
Q Consensus 180 ~l~~~g~~~Vv 190 (308)
.+.+.|.+..+
T Consensus 148 ~l~~~gi~~~i 158 (191)
T TIGR02495 148 ILLRSGIPFEL 158 (191)
T ss_pred HHHHcCCCEEE
Confidence 88888875433
No 139
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=25.53 E-value=1.7e+02 Score=27.57 Aligned_cols=53 Identities=21% Similarity=0.386 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCcccCEEEE----ecc-CCHhHHHHHHHHHHHHHhcCCCceEEEccccc
Q 021714 71 QLCDLIEGLEANNLLYYTHLLT----GYI-GSVSFLNTILQVVEKLRSINPNLIYVCDPVMG 127 (308)
Q Consensus 71 ~~~~~l~~l~~~~~~~~~~v~~----G~l-~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~ 127 (308)
+++.+.+.++. +...|.+ ||- ...-.++.+.++++.+|+.+|++.+++|=-++
T Consensus 143 D~~~i~~~~~~----~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYG 200 (403)
T PF06838_consen 143 DWEAIKKALKP----NTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYG 200 (403)
T ss_dssp -HHHHHHHHHT----TEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTT
T ss_pred CHHHHHHhhcc----CceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcc
Confidence 45556666663 2456665 663 34556788889999999999999999997544
No 140
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=25.11 E-value=1e+02 Score=20.01 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=26.0
Q ss_pred EEEEeccCccCccchhhcHHH-HHhcCCcceeece
Q 021714 17 VLSIQSHTVQGYVGNKSAVFP-LQLLGYDVDPIHS 50 (308)
Q Consensus 17 Vl~i~~~~~~G~~G~~a~~~~-l~~~Gi~~~~v~t 50 (308)
++.+.+....|..|..+.++. |.+.|+++..+++
T Consensus 2 ~i~i~~~~m~~~~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 2 AIEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred EEEEeccccCcccCHHHHHHHHHHHcCCeEEEEec
Confidence 467777777777777776666 8899999988864
No 141
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=25.03 E-value=2e+02 Score=23.06 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=33.2
Q ss_pred eeeCCHHHHHHHHHHHHhCCCcccC-EEEEec--cCCHhHHHHHHHHHHHHHhcCCCceEEEcc
Q 021714 64 GQVLNGQQLCDLIEGLEANNLLYYT-HLLTGY--IGSVSFLNTILQVVEKLRSINPNLIYVCDP 124 (308)
Q Consensus 64 g~~~~~~~~~~~l~~l~~~~~~~~~-~v~~G~--l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dp 124 (308)
+..++.+.++++++.+.+... .. +.++|= +-. ...+.+.++++.+|+.. +...+++.
T Consensus 43 g~~~~~~~~~~i~~~l~~~~~--~~gVt~sGGEPllq-~~~~~l~~ll~~~k~~~-~~~~~~~~ 102 (154)
T TIGR02491 43 GKEFTEALEKEIIRDLNDNPL--IDGLTLSGGDPLYP-RNVEELIELVKKIKAEF-PEKDIWLW 102 (154)
T ss_pred CCcCCHHHHHHHHHHHHhcCC--cCeEEEeChhhCCC-CCHHHHHHHHHHHHHhC-CCCCEEEe
Confidence 456787788888888876431 23 444551 111 12367788888888752 33445554
No 142
>COG4381 Mu-like prophage protein gp46 [Function unknown]
Probab=23.94 E-value=80 Score=24.58 Aligned_cols=55 Identities=22% Similarity=0.178 Sum_probs=42.5
Q ss_pred cHHH----HHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-----CCCCccccc
Q 021714 232 GDLM----TALLLGWSNKYRDNLDIAAELAVSSLQALLQRTVNDYVTAGFD-----PQSSSLEIR 287 (308)
Q Consensus 232 GD~f----~a~l~~~l~~~g~~~~~A~~~A~a~~~~~i~~t~~~~~~~~~~-----~~~~~~~~~ 287 (308)
||++ .|.-+.-|.+ .+.+.+-.-.|-.|+.++++--+++++..-+. |+++..-|.
T Consensus 50 gDs~~~~~~GSrLwlL~R-eK~l~~V~~~Ae~YA~eALqwlv~sg~a~si~v~A~~p~~~~L~L~ 113 (135)
T COG4381 50 GDSTAASALGSRLWLLRR-EKDLQRVSLLAEQYADEALQWLVKSGRADSIQVRASQPQHGRLILH 113 (135)
T ss_pred cccccccchhhHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHhcCccceEEEEeecCCCcEEEEE
Confidence 5666 6667777777 78999999999999999999888876655442 677776653
No 143
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=23.42 E-value=1.4e+02 Score=26.30 Aligned_cols=91 Identities=15% Similarity=0.221 Sum_probs=45.9
Q ss_pred EEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcC---CChhhHHHHHHhhcccceEEcCCHHHHHHhhC
Q 021714 89 HLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLY---VPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (308)
Q Consensus 89 ~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~---~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g 165 (308)
-+.+|-+++.. .+.+++ +++ ++..|+|.- .+| +++.+.++-++.=+|+.-+.-|....- .+
T Consensus 46 ~v~~G~lg~~~---~l~~~l---~~~--~i~~vIDAT-----HPfA~~is~na~~a~~~~~ipylR~eRp~~~~~---~~ 109 (249)
T PF02571_consen 46 EVRVGRLGDEE---GLAEFL---REN--GIDAVIDAT-----HPFAAEISQNAIEACRELGIPYLRFERPSWQPE---PD 109 (249)
T ss_pred eEEECCCCCHH---HHHHHH---HhC--CCcEEEECC-----CchHHHHHHHHHHHHhhcCcceEEEEcCCcccC---CC
Confidence 46677775443 333433 444 778889972 233 122222222222233434444422110 01
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeee
Q 021714 166 FRIGSEADGREACKILHAAGPAKVVITSIN 195 (308)
Q Consensus 166 ~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~ 195 (308)
..+...++.+++++.+.+.+.+.|++|-|.
T Consensus 110 ~~~~~v~~~~eA~~~l~~~~~~~iflttGs 139 (249)
T PF02571_consen 110 DNWHYVDSYEEAAELLKELGGGRIFLTTGS 139 (249)
T ss_pred CeEEEeCCHHHHHHHHhhcCCCCEEEeCch
Confidence 112223567777777777776889998884
No 144
>PRK06256 biotin synthase; Validated
Probab=23.20 E-value=5.7e+02 Score=23.23 Aligned_cols=109 Identities=13% Similarity=0.136 Sum_probs=59.5
Q ss_pred eCCHHHHHHHHHHHHhCCCcccCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHh
Q 021714 66 VLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREK 145 (308)
Q Consensus 66 ~~~~~~~~~~l~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ 145 (308)
.++.+++.+.++.+.+.+...+..+..|.-+.....+.+.++++.+++. +++.+.+-. | ..+++..+.+++.
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~-~~i~~~~~~-----g--~l~~e~l~~Lkea 161 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEE-TDLEICACL-----G--LLTEEQAERLKEA 161 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhc-CCCcEEecC-----C--cCCHHHHHHHHHh
Confidence 3566777777776665542112222234444444456788888888865 344333221 2 2456666666652
Q ss_pred hcccceEEcC----CHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCC
Q 021714 146 VVPVASMLTP----NQFEAEQLTGFRIGSEADGREACKILHAAGPA 187 (308)
Q Consensus 146 ll~~~diitp----N~~E~~~L~g~~~~~~~d~~~~~~~l~~~g~~ 187 (308)
..+-+.. +..-...+.. ..+.++..++++.+.+.|.+
T Consensus 162 ---G~~~v~~~lEts~~~~~~i~~--~~t~~~~i~~i~~a~~~Gi~ 202 (336)
T PRK06256 162 ---GVDRYNHNLETSRSYFPNVVT--THTYEDRIDTCEMVKAAGIE 202 (336)
T ss_pred ---CCCEEecCCccCHHHHhhcCC--CCCHHHHHHHHHHHHHcCCe
Confidence 2333322 4433344432 23567888888888887764
No 145
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=23.09 E-value=1.6e+02 Score=25.99 Aligned_cols=52 Identities=19% Similarity=0.149 Sum_probs=31.0
Q ss_pred eeeCCHHHHHHHHHHHHhCCCcccCEEEEeccCC-HhHHHHHHHHHHHHHhcCCCceEE
Q 021714 64 GQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGS-VSFLNTILQVVEKLRSINPNLIYV 121 (308)
Q Consensus 64 g~~~~~~~~~~~l~~l~~~~~~~~~~v~~G~l~~-~~~~~~~~~~l~~~k~~~~~~~vv 121 (308)
...++...++.+|+.... ..|.+|+|.-.+ -.+.+.+.+.++.++++ ++.+.
T Consensus 19 Dkglg~~~~~dlLe~ag~----yID~~K~g~Gt~~l~~~~~l~eki~l~~~~--gV~v~ 71 (244)
T PF02679_consen 19 DKGLGLRYLEDLLESAGD----YIDFLKFGWGTSALYPEEILKEKIDLAHSH--GVYVY 71 (244)
T ss_dssp ESS--HHHHHHHHHHHGG----G-SEEEE-TTGGGGSTCHHHHHHHHHHHCT--T-EEE
T ss_pred cCCCCHHHHHHHHHHhhh----hccEEEecCceeeecCHHHHHHHHHHHHHc--CCeEe
Confidence 344667888889888775 478999985321 12234667778888876 66544
No 146
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=23.06 E-value=4.4e+02 Score=21.92 Aligned_cols=82 Identities=16% Similarity=0.074 Sum_probs=42.2
Q ss_pred cCEEEE-eccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcCCHHHHHH---
Q 021714 87 YTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQ--- 162 (308)
Q Consensus 87 ~~~v~~-G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~--- 162 (308)
++.+-+ |+--+.+..+.+ -+..+.+ ++.|+.||-.. | +.....+.+ .+|.+.-......++..
T Consensus 23 ~~~I~T~Gs~i~~~~i~~i---~~~~~~r--gVIIfTDpD~~--G-----ekIRk~i~~-~vp~~khafi~~~~a~~~~~ 89 (174)
T TIGR00334 23 VDVIETNGSALKDETINLI---KKAQKKQ--GVIILTDPDFP--G-----EKIRKKIEQ-HLPGYENCFIPKHLAKPNKK 89 (174)
T ss_pred ceEEEECCCccCHHHHHHH---HHHhhcC--CEEEEeCCCCc--h-----HHHHHHHHH-HCCCCeEEeeeHHhcCcCCC
Confidence 455544 553244433333 2333333 88888999432 2 233334443 56766544444555431
Q ss_pred hhCCCCCCHHHHHHHHHHH
Q 021714 163 LTGFRIGSEADGREACKIL 181 (308)
Q Consensus 163 L~g~~~~~~~d~~~~~~~l 181 (308)
=.|.+-.+.+++.++....
T Consensus 90 ~iGVE~As~e~I~~AL~~~ 108 (174)
T TIGR00334 90 KIGVEEASVEAIIAALENV 108 (174)
T ss_pred CcccCCCCHHHHHHHHHHh
Confidence 2465556677777776544
No 147
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=22.55 E-value=7.2e+02 Score=24.13 Aligned_cols=118 Identities=13% Similarity=0.138 Sum_probs=63.5
Q ss_pred eeCCHHHHHHHHHHH-----HhCC-CcccCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhh
Q 021714 65 QVLNGQQLCDLIEGL-----EANN-LLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSEL 138 (308)
Q Consensus 65 ~~~~~~~~~~~l~~l-----~~~~-~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~ 138 (308)
..++.+.+.+.++.+ .+.. .+..|.|-+|+.+. ..+.+...++.+++. .++++++|. .+.+.
T Consensus 100 D~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~--dp~~v~~~Vk~V~~~-~dvPLSIDT---------~dpev 167 (450)
T PRK04165 100 DTMDDEEIDARLKKINNFQFERVGEILKLDMVALRNASG--DPEKFAKAVKKVAET-TDLPLILCS---------EDPAV 167 (450)
T ss_pred CCCChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCC--CHHHHHHHHHHHHHh-cCCCEEEeC---------CCHHH
Confidence 345567777777777 3322 23478899998765 345667778887764 278899996 12232
Q ss_pred HHHHHHhhc-ccceEEcCCH---HHHHHhh---CCCC----CCHHHHHHHHHHHHHcCCCeEEEeee
Q 021714 139 VSVYREKVV-PVASMLTPNQ---FEAEQLT---GFRI----GSEADGREACKILHAAGPAKVVITSI 194 (308)
Q Consensus 139 ~~~l~~~ll-~~~diitpN~---~E~~~L~---g~~~----~~~~d~~~~~~~l~~~g~~~Vvit~g 194 (308)
+++-.+..- ..+++.-.|. .+...+. |.++ .+.+.+.+..+.+.+.|.+.+++=-+
T Consensus 168 leaAleagad~~plI~Sat~dN~~~m~~la~~yg~pvVv~~~dl~~L~~lv~~~~~~GI~dIILDPg 234 (450)
T PRK04165 168 LKAALEVVADRKPLLYAATKENYEEMAELAKEYNCPLVVKAPNLEELKELVEKLQAAGIKDLVLDPG 234 (450)
T ss_pred HHHHHHhcCCCCceEEecCcchHHHHHHHHHHcCCcEEEEchhHHHHHHHHHHHHHcCCCcEEECCC
Confidence 222111111 1233443332 3333322 2221 11344556666667788877776543
No 148
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=22.23 E-value=4.3e+02 Score=22.88 Aligned_cols=91 Identities=16% Similarity=0.065 Sum_probs=52.7
Q ss_pred cCEE-EEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhc-ccceEEcCCHHHHHHhh
Q 021714 87 YTHL-LTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVV-PVASMLTPNQFEAEQLT 164 (308)
Q Consensus 87 ~~~v-~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll-~~~diitpN~~E~~~L~ 164 (308)
.|++ ++|.-+ .+.+.+.++.+++. +..+.+|-.-. | +..+..+. +- -.+|++..+..==.+..
T Consensus 81 Ad~~tV~g~A~----~~TI~~~i~~A~~~--~~~v~iDl~~~-----~---~~~~~~~~-l~~~gvd~~~~H~g~D~q~~ 145 (217)
T COG0269 81 ADWVTVLGAAD----DATIKKAIKVAKEY--GKEVQIDLIGV-----W---DPEQRAKW-LKELGVDQVILHRGRDAQAA 145 (217)
T ss_pred CCEEEEEecCC----HHHHHHHHHHHHHc--CCeEEEEeecC-----C---CHHHHHHH-HHHhCCCEEEEEecccHhhc
Confidence 5643 445533 45667888888887 77888886322 1 22222232 33 46777777765444457
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEEEeeee
Q 021714 165 GFRIGSEADGREACKILHAAGPAKVVITSIN 195 (308)
Q Consensus 165 g~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~ 195 (308)
|.... .+..+..+++.+.| -.|-|++|-
T Consensus 146 G~~~~--~~~l~~ik~~~~~g-~~vAVaGGI 173 (217)
T COG0269 146 GKSWG--EDDLEKIKKLSDLG-AKVAVAGGI 173 (217)
T ss_pred CCCcc--HHHHHHHHHhhccC-ceEEEecCC
Confidence 87542 23344456677666 467888873
No 149
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=22.00 E-value=42 Score=32.28 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=15.9
Q ss_pred CCCCCCccHHHHH-HHHHHHc
Q 021714 225 PAYFTGTGDLMTA-LLLGWSN 244 (308)
Q Consensus 225 ~~~t~GaGD~f~a-~l~~~l~ 244 (308)
+..|+|-||+|+| +|++.++
T Consensus 421 P~sTVGLGDtissgaF~~~~~ 441 (446)
T TIGR02045 421 PKSTVGLGDTISTGAFVSYLA 441 (446)
T ss_pred CcceeccCcccchhHHHHHHH
Confidence 3689999999995 6777665
No 150
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=21.91 E-value=1.9e+02 Score=20.11 Aligned_cols=33 Identities=18% Similarity=0.062 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeeecCC
Q 021714 166 FRIGSEADGREACKILHAAGPAKVVITSINIDG 198 (308)
Q Consensus 166 ~~~~~~~d~~~~~~~l~~~g~~~Vvit~g~~~g 198 (308)
++..+.+-+..++.++.+.....++|++|..+|
T Consensus 12 R~~~D~~~i~~~Ld~~~~~~~~~~lvhGga~~G 44 (71)
T PF10686_consen 12 RDWTDHELIWAALDKVHARHPDMVLVHGGAPKG 44 (71)
T ss_pred CccccHHHHHHHHHHHHHhCCCEEEEECCCCCC
Confidence 334444555666666666667788888874244
No 151
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=21.52 E-value=6.1e+02 Score=27.53 Aligned_cols=77 Identities=21% Similarity=0.231 Sum_probs=42.1
Q ss_pred CCCCCeEEEEeccC-ccCcc------chhhcHHHHHhcCCcceeeceEEec--cCCCCCC-ceeeeCCHHHHHHHHHHHH
Q 021714 11 PSETGRVLSIQSHT-VQGYV------GNKSAVFPLQLLGYDVDPIHSVQFS--NHTGYPT-FKGQVLNGQQLCDLIEGLE 80 (308)
Q Consensus 11 ~~~~~~Vl~i~~~~-~~G~~------G~~a~~~~l~~~Gi~~~~v~t~~~~--~~tg~~~-~~g~~~~~~~~~~~l~~l~ 80 (308)
.++.++||.|++.. ..|.+ |.+ .+++|+++|+.+..+...... .+..+.. ....+++.+.+..+++.-
T Consensus 3 ~~~~~kvlviG~g~~~igq~~e~d~sg~q-~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p~~~~~v~~ii~~e- 80 (1050)
T TIGR01369 3 RTDIKKILVIGSGPIVIGQAAEFDYSGSQ-ACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKE- 80 (1050)
T ss_pred CCCCcEEEEECCCcchhcchhcccchHHH-HHHHHHHcCCEEEEEecchhhccCChhcCCEEEECCCCHHHHHHHHHHh-
Confidence 45678999998854 44543 332 356699999988776532211 1112221 112334555555444422
Q ss_pred hCCCcccCEEEEec
Q 021714 81 ANNLLYYTHLLTGY 94 (308)
Q Consensus 81 ~~~~~~~~~v~~G~ 94 (308)
++|+|+.++
T Consensus 81 -----~~DaIlp~~ 89 (1050)
T TIGR01369 81 -----RPDAILPTF 89 (1050)
T ss_pred -----CCCEEEECC
Confidence 378887654
No 152
>COG3200 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=21.48 E-value=2.9e+02 Score=25.88 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=40.2
Q ss_pred eeeCCHHHHHHHHHHHHhCCCcccCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccc
Q 021714 64 GQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPV 125 (308)
Q Consensus 64 g~~~~~~~~~~~l~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv 125 (308)
|+.++++++-++++.+...+. .-..-++.-+++....+.+-.+++..++....+.+.+||-
T Consensus 291 GP~~~~d~ll~l~d~LnP~ne-pGRLtLi~RmG~dKV~d~LP~li~av~~eG~~VvWs~DPM 351 (445)
T COG3200 291 GPSMTPDELLELIDRLNPHNE-PGRLTLIARMGADKVGDRLPPLVEAVEAEGHQVIWSSDPM 351 (445)
T ss_pred CCCCCHHHHHHHHHhcCCCCC-CceEEeehhhcchHHhhhhhHHHHHHHHcCCceEEecCCC
Confidence 677888888888777776542 1234455556667777777788888877633445556884
No 153
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=21.36 E-value=1.1e+02 Score=24.14 Aligned_cols=31 Identities=23% Similarity=0.124 Sum_probs=25.5
Q ss_pred CCCCccHHHHH-HHHHHHccCCCCHHHHHHHHH
Q 021714 227 YFTGTGDLMTA-LLLGWSNKYRDNLDIAAELAV 258 (308)
Q Consensus 227 ~t~GaGD~f~a-~l~~~l~~~g~~~~~A~~~A~ 258 (308)
.|.|+|-+.++ .++.-+.+ |++++|+++.-+
T Consensus 85 KTFGCGSAIASSS~aTewvk-gkt~dea~kIkN 116 (157)
T KOG3361|consen 85 KTFGCGSAIASSSLATEWVK-GKTLDEALKIKN 116 (157)
T ss_pred eecccchHhhhhHHHHHHHc-cccHHHHHhccc
Confidence 68999999875 67777998 999999987554
No 154
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=21.31 E-value=1.6e+02 Score=23.29 Aligned_cols=49 Identities=18% Similarity=0.296 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhCCCcccCEEEEecc-C----CHhHHHHHHHHHHHHHhcCCCceEE-Ecc
Q 021714 70 QQLCDLIEGLEANNLLYYTHLLTGYI-G----SVSFLNTILQVVEKLRSINPNLIYV-CDP 124 (308)
Q Consensus 70 ~~~~~~l~~l~~~~~~~~~~v~~G~l-~----~~~~~~~~~~~l~~~k~~~~~~~vv-~Dp 124 (308)
+.+..+++.+. ++.+++|+- . .......+.++.+.+++..|+++|. +|=
T Consensus 41 ~~l~~li~~~~------i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DE 95 (135)
T PF03652_consen 41 EELKKLIEEYQ------IDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVDE 95 (135)
T ss_dssp HHHHHHHHHCC------ECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEEC
T ss_pred HHHHHHHHHhC------CCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECC
Confidence 34444544433 788899962 1 2344666778888887765567764 564
No 155
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=21.27 E-value=6.5e+02 Score=23.22 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEEcC------CHHHHHHh--hCCCC------
Q 021714 103 TILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTP------NQFEAEQL--TGFRI------ 168 (308)
Q Consensus 103 ~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~diitp------N~~E~~~L--~g~~~------ 168 (308)
.+.++.+.+++. |+.++..| ++.+.++.+.+ + .+++++- |..=++.+ +|.++
T Consensus 77 ~~~~L~~~~~~~--Gi~~~stp---------fd~~svd~l~~-~--~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGm 142 (329)
T TIGR03569 77 DHRELKEYCESK--GIEFLSTP---------FDLESADFLED-L--GVPRFKIPSGEITNAPLLKKIARFGKPVILSTGM 142 (329)
T ss_pred HHHHHHHHHHHh--CCcEEEEe---------CCHHHHHHHHh-c--CCCEEEECcccccCHHHHHHHHhcCCcEEEECCC
Confidence 344555556555 77777776 23344444433 2 1333332 22222222 34442
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q 021714 169 GSEADGREACKILHAAGPA 187 (308)
Q Consensus 169 ~~~~d~~~~~~~l~~~g~~ 187 (308)
.+.+++..+++.+.+.|.+
T Consensus 143 atl~Ei~~Av~~i~~~G~~ 161 (329)
T TIGR03569 143 ATLEEIEAAVGVLRDAGTP 161 (329)
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 4788999999999888875
No 156
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=21.13 E-value=7e+02 Score=23.44 Aligned_cols=113 Identities=22% Similarity=0.294 Sum_probs=58.8
Q ss_pred eeCCHHHHHHHHHHHHhCCCcccCEEEEeccCCHhHHHHHHHHHHHHHhcCCCceE--------EEccccccCCCcCCCh
Q 021714 65 QVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIY--------VCDPVMGDEGKLYVPS 136 (308)
Q Consensus 65 ~~~~~~~~~~~l~~l~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~v--------v~Dpv~~~~g~~~~~~ 136 (308)
..++.++++..++.+.+...+ -+++++|==|-.-....+..+++.+++- |.+.+ |+.|- =+.+
T Consensus 139 ~~~~~~~~~~al~YIa~hPeI-~eVllSGGDPL~ls~~~L~~ll~~L~~I-pHv~iiRi~TR~pvv~P~-------RIt~ 209 (369)
T COG1509 139 QGFNKEEWDKALDYIAAHPEI-REVLLSGGDPLSLSDKKLEWLLKRLRAI-PHVKIIRIGTRLPVVLPQ-------RITD 209 (369)
T ss_pred ccCCHHHHHHHHHHHHcCchh-heEEecCCCccccCHHHHHHHHHHHhcC-CceeEEEeecccceechh-------hccH
Confidence 345778999999988875431 3578887311111123455666777654 34332 23331 0223
Q ss_pred hhHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC----CeEEEeeee
Q 021714 137 ELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGP----AKVVITSIN 195 (308)
Q Consensus 137 ~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~d~~~~~~~l~~~g~----~~Vvit~g~ 195 (308)
+..+.+.+ ..+.-.+..+..-...++ ++..+++++|.+.|+ +.|++++..
T Consensus 210 ~L~~~l~~--~~~~v~~~tH~NHp~Eit-------~e~~~A~~~L~~aGv~l~NQsVLLrGVN 263 (369)
T COG1509 210 ELCEILGK--SRKPVWLVTHFNHPNEIT-------PEAREACAKLRDAGVPLLNQSVLLRGVN 263 (369)
T ss_pred HHHHHHhc--cCceEEEEcccCChhhcC-------HHHHHHHHHHHHcCceeecchheecccC
Confidence 33333322 112333333433333332 366788888887765 557777653
No 157
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.99 E-value=8.1e+02 Score=24.19 Aligned_cols=103 Identities=17% Similarity=0.088 Sum_probs=61.6
Q ss_pred CCCCCeEEEEeccCccCccchhhcHHH-HHhcCCcceeeceEEeccCCCCCCceeeeCCHHHHHHHHHHHHhCCCcccCE
Q 021714 11 PSETGRVLSIQSHTVQGYVGNKSAVFP-LQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH 89 (308)
Q Consensus 11 ~~~~~~Vl~i~~~~~~G~~G~~a~~~~-l~~~Gi~~~~v~t~~~~~~tg~~~~~g~~~~~~~~~~~l~~l~~~~~~~~~~ 89 (308)
.+..|-|+++-|....|..=+.+.+.- |...++.+....+-+| +. | . -||++...+.+..+.......
T Consensus 374 ~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTF------Rs--G-A--vEQLrtHv~rl~~l~~~~v~l 442 (587)
T KOG0781|consen 374 RRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTF------RS--G-A--VEQLRTHVERLSALHGTMVEL 442 (587)
T ss_pred hcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccch------hh--h-H--HHHHHHHHHHHHHhccchhHH
Confidence 445677999999887777777776555 7888886654443321 11 1 1 267777777776543200111
Q ss_pred EEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccc
Q 021714 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG 127 (308)
Q Consensus 90 v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~ 127 (308)
.--||-.+ ......+.|+.++.++.+ .|.+|..-|
T Consensus 443 fekGYgkd--~a~vak~AI~~a~~~gfD-VvLiDTAGR 477 (587)
T KOG0781|consen 443 FEKGYGKD--AAGVAKEAIQEARNQGFD-VVLIDTAGR 477 (587)
T ss_pred HhhhcCCC--hHHHHHHHHHHHHhcCCC-EEEEecccc
Confidence 22266443 345667889999887444 356777543
No 158
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=20.67 E-value=1.1e+02 Score=26.85 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcCCCceEEEccccc
Q 021714 101 LNTILQVVEKLRSINPNLIYVCDPVMG 127 (308)
Q Consensus 101 ~~~~~~~l~~~k~~~~~~~vv~Dpv~~ 127 (308)
.+.+.++++.++++ |+.|++|-|+.
T Consensus 51 ~~d~~~Lv~~~h~~--gi~VilD~V~N 75 (316)
T PF00128_consen 51 MEDFKELVDAAHKR--GIKVILDVVPN 75 (316)
T ss_dssp HHHHHHHHHHHHHT--TCEEEEEEETS
T ss_pred hhhhhhhhhccccc--cceEEEeeecc
Confidence 45678899999988 99999999885
No 159
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=20.36 E-value=4.9e+02 Score=23.36 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=36.7
Q ss_pred cCEEEEec-c--C-CHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhc---ccceEEcCC
Q 021714 87 YTHLLTGY-I--G-SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVV---PVASMLTPN 156 (308)
Q Consensus 87 ~~~v~~G~-l--~-~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll---~~~diitpN 156 (308)
..++|+|+ + . ...-...+.++++.+++. +.+|++|.-..|= + .+...+.+.++ -.+|.+|.|
T Consensus 54 v~~vK~gla~f~~~G~~G~~~l~~~i~~l~~~--g~~VilD~K~~DI-----~-nTv~~ya~a~~~~~~g~DavTVh 122 (278)
T PRK00125 54 VAAFKPQIAYFEAHGAEGLAQLERTIAYLREA--GVLVIADAKRGDI-----G-STAEAYAKAAFESPLEADAVTVS 122 (278)
T ss_pred ccEEeccHHHHHhcCchhhhHHHHHHHHHHHC--CCcEEEEeecCCh-----H-HHHHHHHHHHhcCccCCcEEEEC
Confidence 56789985 2 1 122345677788888887 7889999855441 1 12222222244 246777777
No 160
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=20.19 E-value=3.5e+02 Score=19.61 Aligned_cols=64 Identities=23% Similarity=0.356 Sum_probs=33.8
Q ss_pred CCeEEEEeccCccCccchhhcHHH-HHhcCCcceeeceEEeccCCCCCCceeee--CCHHHHHHHHHHHHh
Q 021714 14 TGRVLSIQSHTVQGYVGNKSAVFP-LQLLGYDVDPIHSVQFSNHTGYPTFKGQV--LNGQQLCDLIEGLEA 81 (308)
Q Consensus 14 ~~~Vl~i~~~~~~G~~G~~a~~~~-l~~~Gi~~~~v~t~~~~~~tg~~~~~g~~--~~~~~~~~~l~~l~~ 81 (308)
|++++++.-.+-.| ..+-+.. +++.|++...+++-. ....++..+.... -+++.++++.+.+.+
T Consensus 1 mk~~isvlVeN~~G---VL~Rit~lFsRRg~NI~SLtvg~-Te~~~iSRmtivv~~~d~~~ieqI~kQL~K 67 (84)
T PRK13562 1 MTRILKLQVADQVS---TLNRITSAFVRLQYNIDTLHVTH-SEQPGISNMEIQVDIQDDTSLHILIKKLKQ 67 (84)
T ss_pred CcEEEEEEEECCCC---HHHHHHHHHhccCcCeeeEEecc-cCCCCceEEEEEEeCCCHHHHHHHHHHHhC
Confidence 46777777766444 3333333 788999887775432 1222333222211 244455666666664
No 161
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=20.05 E-value=5.6e+02 Score=22.56 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCCCeEEEeeeecCCc
Q 021714 173 DGREACKILHAAGPAKVVITSINIDGN 199 (308)
Q Consensus 173 d~~~~~~~l~~~g~~~Vvit~g~~~g~ 199 (308)
++.+.++++.+.|+..++.|..+.+|.
T Consensus 148 ~~~~l~~~~~~~g~~~ii~TdI~~DGt 174 (241)
T COG0106 148 ELEELAKRLEEVGLAHILYTDISRDGT 174 (241)
T ss_pred CHHHHHHHHHhcCCCeEEEEecccccc
Confidence 456677777788888888887755553
No 162
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=20.04 E-value=6.1e+02 Score=22.37 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=53.7
Q ss_pred cCE-EEEeccCCHhHHHHHHHHHHHHHhcCCCceEEEccccccCCCcCCChhhHHHHHHhhcccceEE-----cCCHHHH
Q 021714 87 YTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASML-----TPNQFEA 160 (308)
Q Consensus 87 ~~~-v~~G~l~~~~~~~~~~~~l~~~k~~~~~~~vv~Dpv~~~~g~~~~~~~~~~~l~~~ll~~~dii-----tpN~~E~ 160 (308)
.+. ..+|==| ..+.+.+.++++.+|+. |+.+.+|.+ | +..++..+. +++..|.+ -++.+-.
T Consensus 84 ~~gvt~SGGEP-~~q~e~~~~~~~~ake~--Gl~~~l~Tn----G--~~~~~~~~~----l~~~~D~v~~DlK~~~~~~y 150 (260)
T COG1180 84 GGGVTFSGGEP-TLQAEFALDLLRAAKER--GLHVALDTN----G--FLPPEALEE----LLPLLDAVLLDLKAFDDELY 150 (260)
T ss_pred CCEEEEECCcc-hhhHHHHHHHHHHHHHC--CCcEEEEcC----C--CCCHHHHHH----HHhhcCeEEEeeccCChHHH
Confidence 453 3444322 24577888999999998 899999984 3 334444433 44444433 3444447
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCCCe
Q 021714 161 EQLTGFRIGSEADGREACKILHAAGPAK 188 (308)
Q Consensus 161 ~~L~g~~~~~~~d~~~~~~~l~~~g~~~ 188 (308)
..++|.+. +-+.+.++.+.+.|...
T Consensus 151 ~~~tg~~~---~~vl~~~~~l~~~g~~v 175 (260)
T COG1180 151 RKLTGADN---EPVLENLELLADLGVHV 175 (260)
T ss_pred HHHhCCCc---HHHHHHHHHHHcCCCeE
Confidence 88888754 56677777777777543
Done!