Query 021716
Match_columns 308
No_of_seqs 136 out of 750
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:07:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021716.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021716hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1607 Protein transporter of 100.0 1E-66 2.2E-71 483.3 26.4 267 17-308 43-310 (318)
2 COG5058 LAG1 Protein transport 100.0 1.5E-62 3.2E-67 449.0 23.4 269 16-307 110-386 (395)
3 KOG1608 Protein transporter of 100.0 1.7E-36 3.8E-41 274.9 18.6 198 15-232 72-269 (374)
4 smart00724 TLC TRAM, LAG1 and 100.0 2.5E-36 5.5E-41 267.6 17.2 201 73-286 1-204 (205)
5 PF03798 TRAM_LAG1_CLN8: TLC d 100.0 6E-29 1.3E-33 217.4 14.2 191 74-280 1-198 (198)
6 PF08390 TRAM1: TRAM1-like pro 98.7 4.8E-08 1E-12 71.7 6.3 54 3-56 5-62 (65)
7 KOG4561 Uncharacterized conser 98.5 4.3E-07 9.2E-12 84.2 8.2 129 154-288 138-269 (281)
8 KOG4474 Uncharacterized conser 97.4 0.00097 2.1E-08 61.0 9.2 139 73-226 44-187 (253)
9 PRK01637 hypothetical protein; 51.4 62 0.0014 30.1 7.4 48 257-307 236-283 (286)
10 PF14851 FAM176: FAM176 family 35.6 34 0.00075 29.3 2.7 7 277-283 41-47 (153)
11 PF14293 YWFCY: YWFCY protein 35.2 31 0.00068 24.9 2.0 13 265-277 21-33 (61)
12 PRK13454 F0F1 ATP synthase sub 33.3 2.1E+02 0.0045 24.9 7.4 42 10-52 15-60 (181)
13 PF06679 DUF1180: Protein of u 28.8 1.1E+02 0.0025 26.4 4.8 13 264-276 101-113 (163)
14 PF10587 EF-1_beta_acid: Eukar 28.6 17 0.00038 22.0 -0.2 7 298-304 4-10 (28)
15 PF15330 SIT: SHP2-interacting 27.9 1.4E+02 0.003 23.9 4.9 27 261-287 4-30 (107)
16 PF05086 Dicty_REP: Dictyostel 27.8 38 0.00082 36.2 2.0 17 283-299 882-898 (911)
17 KOG1031 Predicted Ca2+-depende 26.9 27 0.00059 36.1 0.8 18 290-307 785-802 (1169)
18 PF08507 COPI_assoc: COPI asso 25.0 62 0.0013 26.7 2.5 14 295-308 123-136 (136)
19 PF05279 Asp-B-Hydro_N: Aspart 24.2 1E+02 0.0022 28.5 3.9 49 253-308 11-60 (243)
No 1
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-66 Score=483.35 Aligned_cols=267 Identities=48% Similarity=0.858 Sum_probs=241.2
Q ss_pred CCCcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccchhhhhHHHHHHHhhhhhHHHHHHHHhhhhhhee
Q 021716 17 YPAYEDFAVLPLFALYFPSVRFFLEKFVFEKVAKRWIFGKGHHMLDFKTSERKKKIRKFNESAWKCVYFLTAELLALSVT 96 (308)
Q Consensus 17 ~p~~~Dl~~~~~~~~~~~~~R~~~~~~v~~pl~~~l~~~~~~~~~~~~~~~~~~k~~Kf~Es~w~~~~y~~s~~~g~~v~ 96 (308)
-.++.|.+...+++...+..|....-.+..|...+.+..++ ++.+||+||+|+++||++++++|++++
T Consensus 43 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~------------~~~~k~~Es~Wk~~yy~~s~~~glyV~ 110 (318)
T KOG1607|consen 43 GKGASDICFLRFYLLFFTFTRLFLMLLVGRPFPLRLNVTAD------------RRKKKFCESAWKFLYYLVSWIFGLYVM 110 (318)
T ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCcCc------------hhhhhhHHHHHHHHHHHHHHHHhhhhe
Confidence 34567999999999999999988888888888877543321 223899999999999999999999999
Q ss_pred ecCCCCCCchhhhcCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHhHHHHHHHHHHHHHhhhcc
Q 021716 97 YDEPWFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALMFWETRRADFGVSMGHHVATVILIVLSYIFRF 176 (308)
Q Consensus 97 ~~~~w~~~~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~afy~~~~~~l~f~e~kRkD~~~m~~HHi~Ti~Li~~SY~~n~ 176 (308)
+++||+.|++.+|.| ||+++++.++|++|++|.|||.|+++.+ +.|++||||+||++||++|+.||++||..||
T Consensus 111 ~~~~wf~~~k~~w~~-----yP~~~~~~~~k~~Y~~e~gfY~~~l~al-~~d~~rkDf~~m~vHHvvTl~Li~lSy~~~f 184 (318)
T KOG1607|consen 111 YHEPWFYDTKSFWEG-----YPDQTLPPSFKAYYLLEAGFYIQLLFAL-FLDEKRKDFWEMVVHHVVTLILISLSYVFNF 184 (318)
T ss_pred ecchhhcCHHHHHhc-----CCCCCCCHHHHHHHHHhhHHHHHHHHHH-HhhccccHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999 9999999999999999999999999985 6889999999999999999999999999999
Q ss_pred eecceEEEEecccchhHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHhHhhhHhhhhhhHH-HHhhhcCCCCCCCCcc
Q 021716 177 ARVGSVVLALHDASDVFLEIGKMSKYIGAEGIASLSFILFVLSWILLRLIYYPFWILWSTSYE-VILTLDKKKHPMDGPI 255 (308)
Q Consensus 177 ~rvG~~Vl~lHD~sDifL~~aK~~~y~~~~~~~~~~Fv~f~~~w~~~Rl~~~p~~vl~s~~~~-~~~~~~~~~~~~~~p~ 255 (308)
+|+|.+|+.+||+||++||++|++||.+.+.+++..|++|+.+|+++|++++|+++++++..+ .... ....++
T Consensus 185 ~R~G~lil~lhD~SD~~Le~~K~~nY~~~~~~~~~~F~~F~~~wi~~RL~~~p~wil~st~~~~~~~~------~~~~~~ 258 (318)
T KOG1607|consen 185 TRVGTLILALHDASDVFLELGKMLNYLQFEAIADFVFVLFAFSWIYTRLIYYPFWILRSTSREDFSLR------QYQPKP 258 (318)
T ss_pred hcccceeeeeecchHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh------ccCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999853 2211 123456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCCCCCC
Q 021716 256 YYYVFNTLLFCLLVLHIYWWVLIYRMLVKQVQARGRVSEDVRSDSESDNEHED 308 (308)
Q Consensus 256 ~~~~~~~lL~~L~~LhiyWf~lI~k~~~~~~~~~g~~~~D~Rsd~e~~~~~~~ 308 (308)
.++++++||.+||+||+||+++|+||++|+++ +|+..||+|||+|||||+|+
T Consensus 259 ~~~~~~~lL~~Lqll~i~W~~lI~rm~~r~~~-~g~~~eD~Rsd~~s~d~~~~ 310 (318)
T KOG1607|consen 259 SYYFFNCLLLALQLLHIYWFYLILRMAYRVIK-RGMQGEDIRSDSESEDSSEE 310 (318)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccccccccccccccccc
Confidence 78999999999999999999999999999999 48888999999999987774
No 2
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.5e-62 Score=449.02 Aligned_cols=269 Identities=29% Similarity=0.499 Sum_probs=239.0
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccchhhhhHHHHHHHhhhhhHHHHHHHHhhhhhhe
Q 021716 16 SYPAYEDFAVLPLFALYFPSVRFFLEKFVFEKVAKRWIFGKGHHMLDFKTSERKKKIRKFNESAWKCVYFLTAELLALSV 95 (308)
Q Consensus 16 ~~p~~~Dl~~~~~~~~~~~~~R~~~~~~v~~pl~~~l~~~~~~~~~~~~~~~~~~k~~Kf~Es~w~~~~y~~s~~~g~~v 95 (308)
+=.|..|++++++++++++.+|.+++..|++|++..++.+. ++|++||+||+|.++||++++.+|+|+
T Consensus 110 YgKG~~d~~F~lfy~ifftf~ref~md~virpf~l~~~v~s------------~kkikRf~eq~y~~fyy~v~g~~Glyv 177 (395)
T COG5058 110 YGKGILDLCFVLFYMIFFTFLREFLMDVVIRPFGLELNVRS------------EKKIKRFCEQMYAIFYYGVSGPFGLYV 177 (395)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC------------HHHHHHHHHHHHHHHHhhccccceEEE
Confidence 44678999999999999999999999999999999977654 478999999999999999999999999
Q ss_pred eecCC-CCCCchhhhcCCCCCCCCCccccchhHHHHHHHHHHHHHH--HHHHHhhhhhcchhhhHhHHHHHHHHHHHHHh
Q 021716 96 TYDEP-WFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYS--IFALMFWETRRADFGVSMGHHVATVILIVLSY 172 (308)
Q Consensus 96 ~~~~~-w~~~~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~afy~~~--~~~l~f~e~kRkD~~~m~~HHi~Ti~Li~~SY 172 (308)
++++| |+.|++.+|.+ ||+..+|...|.||++|+|||.|| ++. +..|++||||+||+.||++|++||..||
T Consensus 178 mrss~~w~fntk~l~et-----yp~~~~p~lfk~fYliqaafw~qQa~ilv-LqlEkprkD~~elv~HHIVTllLI~lSY 251 (395)
T COG5058 178 MRSSPLWFFNTKALYET-----YPVFYNPFLFKAFYLIQAAFWAQQACILV-LQLEKPRKDFKELVFHHIVTLLLIWLSY 251 (395)
T ss_pred EecCcchhhhhHHHHHh-----CccccCcHHHHHHHHHHHHHHHHHHhhhe-eeecchhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999 77799999998 999999999999999999999998 554 4689999999999999999999999999
Q ss_pred hhcceecceEEEEecccchhHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHhHhhhHhhhhhhHHHHhhh-----cCC
Q 021716 173 IFRFARVGSVVLALHDASDVFLEIGKMSKYIGAEGIASLSFILFVLSWILLRLIYYPFWILWSTSYEVILTL-----DKK 247 (308)
Q Consensus 173 ~~n~~rvG~~Vl~lHD~sDifL~~aK~~~y~~~~~~~~~~Fv~f~~~w~~~Rl~~~p~~vl~s~~~~~~~~~-----~~~ 247 (308)
.++|+|+|+.|.+.||+||++|+++|++||++. .+++..|++|+.+|++.|+++. .+|+|+++.+. .+. +..
T Consensus 252 ~fhftr~GlAI~itmDvSD~~Ls~sK~lnYl~~-~l~~~iF~iFv~~wIysRHyln-~kIlw~vlt~~-r~~g~~~L~va 328 (395)
T COG5058 252 VFHFTRMGLAIYITMDVSDFFLSLSKTLNYLNS-VLATFIFGIFVFIWIYSRHYLN-LKILWSVLTAF-RTIGNFVLDVA 328 (395)
T ss_pred HHHHHhccceEEEEEeccHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhch-hhcCceeeEee
Confidence 999999999999999999999999999999997 8899999999999999999876 47899987632 222 111
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCCCCC
Q 021716 248 KHPMDGPIYYYVFNTLLFCLLVLHIYWWVLIYRMLVKQVQARGRVSEDVRSDSESDNEHE 307 (308)
Q Consensus 248 ~~~~~~p~~~~~~~~lL~~L~~LhiyWf~lI~k~~~~~~~~~g~~~~D~Rsd~e~~~~~~ 307 (308)
.......+...++..||.+||.+|+||+.||+||++|++.+ |+ .+|+|||||||||+|
T Consensus 329 ~~qykcwisl~i~~iLl~aLQlvniyWl~lIvRvayRv~~~-~e-~~D~RSd~e~ee~s~ 386 (395)
T COG5058 329 TQQYKCWISLPIVFILLQALQLVNIYWLFLIVRVAYRVIWE-GE-LKDERSDDESEEESD 386 (395)
T ss_pred chhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cc-ccccccccccCChhh
Confidence 11222334567888899999999999999999999999986 54 689999999998765
No 3
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-36 Score=274.93 Aligned_cols=198 Identities=20% Similarity=0.384 Sum_probs=189.2
Q ss_pred CCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccchhhhhHHHHHHHhhhhhHHHHHHHHhhhhhh
Q 021716 15 ESYPAYEDFAVLPLFALYFPSVRFFLEKFVFEKVAKRWIFGKGHHMLDFKTSERKKKIRKFNESAWKCVYFLTAELLALS 94 (308)
Q Consensus 15 ~~~p~~~Dl~~~~~~~~~~~~~R~~~~~~v~~pl~~~l~~~~~~~~~~~~~~~~~~k~~Kf~Es~w~~~~y~~s~~~g~~ 94 (308)
.++.|++|++.+++|+++++++|+++|+|+++++++|++++| .|..||+||+...+||..|.+||.+
T Consensus 72 ~Y~yGikDl~tifFY~l~~IIiHAviQEyvLDKIsKr~hlSK-------------~k~~kFnESgql~~Fy~~S~vwg~~ 138 (374)
T KOG1608|consen 72 LYYYGIKDLATIFFYMLVAIIIHAVIQEYVLDKISKRLHLSK-------------VKHSKFNESGQLVAFYLFSCVWGFY 138 (374)
T ss_pred eeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-------------hhhhhhccCCeeeehhhHHhhhhhe
Confidence 378899999999999999999999999999999999999886 7899999999999999999999999
Q ss_pred eeecCCCCCCchhhhcCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHhHHHHHHHHHHHHHhhh
Q 021716 95 VTYDEPWFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALMFWETRRADFGVSMGHHVATVILIVLSYIF 174 (308)
Q Consensus 95 v~~~~~w~~~~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~afy~~~~~~l~f~e~kRkD~~~m~~HHi~Ti~Li~~SY~~ 174 (308)
++..|.+..|+++.|.| |||++|+...|+||+.|+|||+|++++++|+++||+|....+.|-+..+.+|+++|.+
T Consensus 139 ili~E~yl~~p~~lW~~-----yPh~~msfq~Kffyi~QlaYwlHafPElYfQK~Kkeeiprqlvyi~l~l~hI~gAYll 213 (374)
T KOG1608|consen 139 ILISEGYLSDPTSLWEG-----YPHRVMSFQMKFFYISQLAYWLHAFPELYFQKTKKEEIPRQLVYIILHLFHIAGAYLL 213 (374)
T ss_pred eeeecccccChHHHHhc-----CCCchhhHHHHHHHHHHHHHHHHHChHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cceecceEEEEecccchhHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHhHhhhHh
Q 021716 175 RFARVGSVVLALHDASDVFLEIGKMSKYIGAEGIASLSFILFVLSWILLRLIYYPFWI 232 (308)
Q Consensus 175 n~~rvG~~Vl~lHD~sDifL~~aK~~~y~~~~~~~~~~Fv~f~~~w~~~Rl~~~p~~v 232 (308)
|+.|+|.+.+.||.+++.+.++++++.+.+.+ .+.+|.+++.+|+..|+.....-+
T Consensus 214 nl~rlgLvLl~LhYftellfHi~rlfyf~dek--~~k~fslwa~vF~l~Rl~tliiaV 269 (374)
T KOG1608|consen 214 NLNRLGLVLLTLHYFTELLFHIARLFYFSDEK--YQKLFSLWAAVFVLGRLGTLIIAV 269 (374)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHheecccc--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999977 578999999999999998765433
No 4
>smart00724 TLC TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.
Probab=100.00 E-value=2.5e-36 Score=267.63 Aligned_cols=201 Identities=36% Similarity=0.680 Sum_probs=177.6
Q ss_pred HHHhhhhhHHHHHHHHhhhhhheeecCCCCCCchhhhcCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHH-hhhhhc
Q 021716 73 RKFNESAWKCVYFLTAELLALSVTYDEPWFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALM-FWETRR 151 (308)
Q Consensus 73 ~Kf~Es~w~~~~y~~s~~~g~~v~~~~~w~~~~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~afy~~~~~~l~-f~e~kR 151 (308)
+|++|+.||+++|+.+++.|++++++++|++|+. .+ +|.++.+...+++|.+|+|||+++++.+. +.+.+|
T Consensus 1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~~~~~~---~~-----~p~~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~ 72 (205)
T smart00724 1 SKFNESSNRLVSYLHSVIAGLYALYSEPWLSDPK---SL-----YPIQGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKR 72 (205)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhccCCcccCCc---cc-----CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 4899999999999999999999999999988886 34 89999999999999999999999988765 689999
Q ss_pred chhhhHhHHHHHHHHHHHHHhhhcceecceEEEEecccchhHHHHhhhhhhcccc--chhhHHHHHHHHHHHHHHHhHhh
Q 021716 152 ADFGVSMGHHVATVILIVLSYIFRFARVGSVVLALHDASDVFLEIGKMSKYIGAE--GIASLSFILFVLSWILLRLIYYP 229 (308)
Q Consensus 152 kD~~~m~~HHi~Ti~Li~~SY~~n~~rvG~~Vl~lHD~sDifL~~aK~~~y~~~~--~~~~~~Fv~f~~~w~~~Rl~~~p 229 (308)
||.+||++||++|++++..||..|++|.|.+++++||+||||++++|+++++|.+ ...+..+++|+++|+++|++.+|
T Consensus 73 ~d~~~~~~HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s~~fl~~~~~l~~~~~~~~~~~~~~~~~f~~~f~~~R~~~~p 152 (205)
T smart00724 73 KDFKEMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRKLLNYAGRKKSLLYDVNFVLFAVVFFVFRLILFP 152 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999985 67899999999999999999999
Q ss_pred hHhhhhhhHHHHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021716 230 FWILWSTSYEVILTLDKKKHPMDGPIYYYVFNTLLFCLLVLHIYWWVLIYRMLVKQV 286 (308)
Q Consensus 230 ~~vl~s~~~~~~~~~~~~~~~~~~p~~~~~~~~lL~~L~~LhiyWf~lI~k~~~~~~ 286 (308)
..+++..........+ ..++..+..+..++.+|++||+||+++|+|++.|.+
T Consensus 153 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~ln~~Wf~~i~~~~~~~~ 204 (205)
T smart00724 153 FLILTVTVHYAQAESG-----LFPPLLYLLFLLLLLCLQLLNIYWFFLILRMARKLL 204 (205)
T ss_pred HHHHHHHhhhhhhhcC-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8776655432211111 113445678888999999999999999999999864
No 5
>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane
Probab=99.96 E-value=6e-29 Score=217.43 Aligned_cols=191 Identities=29% Similarity=0.608 Sum_probs=159.0
Q ss_pred HHhhhhhHHHHHHHHhhhhhheeecCCCCCCchhhhcCCCCCCCCCcc---ccchhHHHHHHHHHHHHHHHHHHHhhhhh
Q 021716 74 KFNESAWKCVYFLTAELLALSVTYDEPWFKNTRCFWVGPGNQVWPDQK---IKLKLKGVYMYAAGFYTYSIFALMFWETR 150 (308)
Q Consensus 74 Kf~Es~w~~~~y~~s~~~g~~v~~~~~w~~~~~~~w~~~~~~~~P~~~---~~~~~~~yYl~q~afy~~~~~~l~f~e~k 150 (308)
||+|+.+.++++++++++|++++.++| ++|.+ ||+.+ .+...+.++.+++||+++++......+++
T Consensus 1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~------~~~~~-----~~~~~~~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~ 69 (198)
T PF03798_consen 1 KWNNRVVSFVHAIVSSIWGLYILLNDP------ELWSD-----WPDDPWYYSSWLVKFYYAFSLGYFLYDLIVMLLYYRK 69 (198)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhcCc------HHhhh-----cccCccCCccHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 689999999999999999999999988 45555 44433 34577889999999999999887777888
Q ss_pred cchhhhHhHHHHHHHHHHHHHhhhcceecceEEEEecccchhHHHHhhhhhhc-cc-cchhhHHH--HHHHHHHHHHHHh
Q 021716 151 RADFGVSMGHHVATVILIVLSYIFRFARVGSVVLALHDASDVFLEIGKMSKYI-GA-EGIASLSF--ILFVLSWILLRLI 226 (308)
Q Consensus 151 RkD~~~m~~HHi~Ti~Li~~SY~~n~~rvG~~Vl~lHD~sDifL~~aK~~~y~-~~-~~~~~~~F--v~f~~~w~~~Rl~ 226 (308)
|+|+++|++||++|+.++..||..|..|.|++++++||+|||||+++|++++. +. +......+ ++|+++|+.+|++
T Consensus 70 ~~d~~~~~~HH~~~l~~~~~~~~~~~~~~~~~~~ll~E~st~fl~~r~~l~~~~~~~~~~~~~~~~~~~f~~~f~~~Ri~ 149 (198)
T PF03798_consen 70 RGDFWEMLLHHVVTLVLFYFSYFYNFGRFGIVVFLLHEISTPFLNLRWFLKYLGGYSKKSSLYRFNGVLFAVTFFVFRIV 149 (198)
T ss_pred hhhhhHhhHHHHHHHHHHHHhhHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999 55 45566677 9999999999999
Q ss_pred HhhhHhhhhhhHHHHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021716 227 YYPFWILWSTSYEVILTLDKKKHPMDGPIYYYVFNTLLFCLLVLHIYWWVLIYR 280 (308)
Q Consensus 227 ~~p~~vl~s~~~~~~~~~~~~~~~~~~p~~~~~~~~lL~~L~~LhiyWf~lI~k 280 (308)
.+|+.+.+...... + .+. ....+.....+.+++++|++||+||+++|+|
T Consensus 150 ~~~~~~~~~~~~~~-~-~~~---~~~~~~~~~~~~~~~~~l~~Ln~~W~~~i~r 198 (198)
T PF03798_consen 150 LFPYLIYWVYWDVW-P-LPL---WKVPWPVPWIFLVLLLVLFVLNIYWFYLILR 198 (198)
T ss_pred HHHHHHHHHHHHhc-c-ccc---cccchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99987766553221 1 011 1112345667888899999999999999986
No 6
>PF08390 TRAM1: TRAM1-like protein; InterPro: IPR013599 This family comprises sequences that are similar to human TRAM1 (Q15629 from SWISSPROT). This is a transmembrane protein of the endoplasmic reticulum, thought to be involved in the membrane transfer of secretory proteins []. The region featured in this family is found N-terminal to the longevity-assurance protein region (IPR005547 from INTERPRO).
Probab=98.69 E-value=4.8e-08 Score=71.69 Aligned_cols=54 Identities=20% Similarity=0.336 Sum_probs=47.3
Q ss_pred cccccccc----ccCCCCCCCcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 021716 3 FVELVKSV----NWEQESYPAYEDFAVLPLFALYFPSVRFFLEKFVFEKVAKRWIFGK 56 (308)
Q Consensus 3 ~~~~~~~~----~~~~~~~p~~~Dl~~~~~~~~~~~~~R~~~~~~v~~pl~~~l~~~~ 56 (308)
|+.|+-++ +=.+.+-.|++|++++++++++++++|++++++|++|+|++++++|
T Consensus 5 Fi~lsy~~~~~~~~~~~Y~~G~~D~~fV~fy~i~~t~lRa~~m~yvl~Plar~~gi~k 62 (65)
T PF08390_consen 5 FIFLSYNVPGSPPGTGLYGKGWDDLYFVFFYIIVFTFLRAFLMEYVLDPLARKLGISK 62 (65)
T ss_pred EEEccCCCCCCCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 56677777 4556788899999999999999999999999999999999988765
No 7
>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=98.48 E-value=4.3e-07 Score=84.23 Aligned_cols=129 Identities=18% Similarity=0.275 Sum_probs=86.5
Q ss_pred hhhHhHHHHHHHHHHHHHhhhcceecceEEEEecccchhHHHHhhhhhhccccc--hhhHHHHHHHHHHHHHHHhHhhhH
Q 021716 154 FGVSMGHHVATVILIVLSYIFRFARVGSVVLALHDASDVFLEIGKMSKYIGAEG--IASLSFILFVLSWILLRLIYYPFW 231 (308)
Q Consensus 154 ~~~m~~HHi~Ti~Li~~SY~~n~~rvG~~Vl~lHD~sDifL~~aK~~~y~~~~~--~~~~~Fv~f~~~w~~~Rl~~~p~~ 231 (308)
-.+|++||++.+..++..-...+...=...+++-..|.||+...+.+.-++.++ +-.++-.+..++|+..|+..+|.
T Consensus 138 ~~~fviHh~~s~~~v~~~~~~~~g~y~~~~~L~~ElSTPFvnlrw~L~~~~~k~Sl~~~vNG~lm~~~F~v~RIll~~~- 216 (281)
T KOG4561|consen 138 GIEFVIHHIASLVFVGCLLRRGVGQYYAGTFLMAELSTPFVNLRWFLDKAGQKKSLFYKVNGLLLLVVFFVARILLWPY- 216 (281)
T ss_pred CeeEEeeHHHHhhhheeeEecCccceeeeeeheeecCCceeeHHHHHHHcCcccchHHHhhhHHHHHHHHHHHHHHHHH-
Confidence 467999999992222111111111112456788999999999999999888764 45678889999999999998886
Q ss_pred hhhhhh-HHHHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021716 232 ILWSTS-YEVILTLDKKKHPMDGPIYYYVFNTLLFCLLVLHIYWWVLIYRMLVKQVQA 288 (308)
Q Consensus 232 vl~s~~-~~~~~~~~~~~~~~~~p~~~~~~~~lL~~L~~LhiyWf~lI~k~~~~~~~~ 288 (308)
+-|... .......+ ..+...| ...++.-.+|.+||+|||..|+|.+.|.+..
T Consensus 217 ~~~~~~~~~~~~~~~--~~~~~~~---~~~l~~~~~L~v~Nl~Wf~km~~ga~K~~~~ 269 (281)
T KOG4561|consen 217 MGWHYYWRYQGLVLN--QVPPFLP---LFLLGLNALLLVLNLYWFSKMVRGALKVLKK 269 (281)
T ss_pred HHHHHHHHHhhhhhh--hhchhHh---HHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 434432 22111121 1222223 3445555678999999999999999999875
No 8
>KOG4474 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.00097 Score=60.98 Aligned_cols=139 Identities=19% Similarity=0.317 Sum_probs=90.3
Q ss_pred HHHhhhhhHHHHHHHHhhhhhheeecCC-CCCCchhhhcCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 021716 73 RKFNESAWKCVYFLTAELLALSVTYDEP-WFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALMFWETRR 151 (308)
Q Consensus 73 ~Kf~Es~w~~~~y~~s~~~g~~v~~~~~-w~~~~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~afy~~~~~~l~f~e~kR 151 (308)
.||..-.=.++.-+++..++.+.+.+.| -.-|+-.++.. . -.-.-+.++||.++....+. .+++-
T Consensus 44 ~r~~n~~VSl~HS~Isg~~a~~~l~~~~~~~~~~~~~~s~----------~---~~~l~~fS~gYfiyD~vDm~-~~~~s 109 (253)
T KOG4474|consen 44 KRFSNLTVSLLHSTISGLWALLSLLYDPEMVDDPITYHSL----------S---AYQLLLFSAGYFIYDLVDML-MNEQS 109 (253)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHhh----------h---hHHHHHHHHHHHHHHHHHHH-hcchh
Confidence 4566666566666777777777766665 22333322211 0 11133667899999998865 45556
Q ss_pred chhhhHhHHHHHHHHHHHHH-hhhcceecceEEEEecccchhHHHHhhhhhhccccc---hhhHHHHHHHHHHHHHHHh
Q 021716 152 ADFGVSMGHHVATVILIVLS-YIFRFARVGSVVLALHDASDVFLEIGKMSKYIGAEG---IASLSFILFVLSWILLRLI 226 (308)
Q Consensus 152 kD~~~m~~HHi~Ti~Li~~S-Y~~n~~rvG~~Vl~lHD~sDifL~~aK~~~y~~~~~---~~~~~Fv~f~~~w~~~Rl~ 226 (308)
.+.+|...||++++.=.+.. +...+.- +++...+..+++|||+.-++++-.+.++ .-++.=.+-.++++.+|++
T Consensus 110 ~~s~e~LvHH~v~i~aF~~~lf~~~~~~-~~~~~llmEv~SiFLH~R~il~l~g~s~~~~~~rv~v~lN~i~f~~fR~~ 187 (253)
T KOG4474|consen 110 ELSWEYLVHHVVCIIAFVLGLFYSKFLG-YVVAALLMEVSSIFLHLRSILKLAGLSTTLPSFRVVVYLNLITFFFFRLI 187 (253)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHhc
Confidence 78999999999987543322 2222222 3566788999999999999999887654 2334445667778888874
No 9
>PRK01637 hypothetical protein; Reviewed
Probab=51.36 E-value=62 Score=30.11 Aligned_cols=48 Identities=8% Similarity=0.311 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCCCCC
Q 021716 257 YYVFNTLLFCLLVLHIYWWVLIYRMLVKQVQARGRVSEDVRSDSESDNEHE 307 (308)
Q Consensus 257 ~~~~~~lL~~L~~LhiyWf~lI~k~~~~~~~~~g~~~~D~Rsd~e~~~~~~ 307 (308)
|-.+.+++..|.-+++.|..+++-..++....+ .+..++.-|.|||||
T Consensus 236 YGslg~vi~lllWlyl~~~ilL~Gaelna~~~~---~~~~~~~~~~~~~~~ 283 (286)
T PRK01637 236 YGALAVIPILFVWVYLSWCIVLLGAEITATLGE---YRKLKQAAEQEEDDE 283 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcccccccccc
Confidence 445667788888899999999988777654431 223334444444444
No 10
>PF14851 FAM176: FAM176 family
Probab=35.61 E-value=34 Score=29.28 Aligned_cols=7 Identities=29% Similarity=0.548 Sum_probs=4.0
Q ss_pred HHHHHHH
Q 021716 277 LIYRMLV 283 (308)
Q Consensus 277 lI~k~~~ 283 (308)
+++|+..
T Consensus 41 lV~risc 47 (153)
T PF14851_consen 41 LVIRISC 47 (153)
T ss_pred HHhhhee
Confidence 4556655
No 11
>PF14293 YWFCY: YWFCY protein
Probab=35.17 E-value=31 Score=24.87 Aligned_cols=13 Identities=38% Similarity=1.134 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHH
Q 021716 265 FCLLVLHIYWWVL 277 (308)
Q Consensus 265 ~~L~~LhiyWf~l 277 (308)
+++.++|+||+..
T Consensus 21 I~~l~ih~Y~~CY 33 (61)
T PF14293_consen 21 ILFLVIHFYWFCY 33 (61)
T ss_pred HHHHHHHHHHHHH
Confidence 4567899999975
No 12
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=33.30 E-value=2.1e+02 Score=24.85 Aligned_cols=42 Identities=12% Similarity=0.261 Sum_probs=27.4
Q ss_pred cccCCCCCCCcCchh----hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021716 10 VNWEQESYPAYEDFA----VLPLFALYFPSVRFFLEKFVFEKVAKRW 52 (308)
Q Consensus 10 ~~~~~~~~p~~~Dl~----~~~~~~~~~~~~R~~~~~~v~~pl~~~l 52 (308)
......+.|++ |.. -++...+.+.++=+++.++++.|+.+-+
T Consensus 15 ~~~~~~gmp~l-d~~t~~~q~~~~lI~F~iL~~ll~k~l~~PI~~~l 60 (181)
T PRK13454 15 HAASAPGMPQL-DFSTFPNQIFWLLVTLVAIYFVLTRVALPRIGAVL 60 (181)
T ss_pred cccCCCCCCCC-cHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666 332 3444456667777888899999999875
No 13
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=28.84 E-value=1.1e+02 Score=26.39 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 021716 264 LFCLLVLHIYWWV 276 (308)
Q Consensus 264 L~~L~~LhiyWf~ 276 (308)
++++..+-+-||.
T Consensus 101 l~g~s~l~i~yfv 113 (163)
T PF06679_consen 101 LVGLSALAILYFV 113 (163)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 14
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=28.56 E-value=17 Score=22.04 Aligned_cols=7 Identities=43% Similarity=0.767 Sum_probs=3.3
Q ss_pred CCCCCCC
Q 021716 298 SDSESDN 304 (308)
Q Consensus 298 sd~e~~~ 304 (308)
||||++|
T Consensus 4 SddEeed 10 (28)
T PF10587_consen 4 SDDEEED 10 (28)
T ss_pred Ccccccc
Confidence 4555443
No 15
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=27.85 E-value=1.4e+02 Score=23.93 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021716 261 NTLLFCLLVLHIYWWVLIYRMLVKQVQ 287 (308)
Q Consensus 261 ~~lL~~L~~LhiyWf~lI~k~~~~~~~ 287 (308)
.+++.+|.+|-+....+-.+|..|.-+
T Consensus 4 l~il~llLll~l~asl~~wr~~~rq~k 30 (107)
T PF15330_consen 4 LGILALLLLLSLAASLLAWRMKQRQKK 30 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 344555566666666677777766543
No 16
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=27.82 E-value=38 Score=36.15 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=9.0
Q ss_pred HHHHHhcCCcccccCCC
Q 021716 283 VKQVQARGRVSEDVRSD 299 (308)
Q Consensus 283 ~~~~~~~g~~~~D~Rsd 299 (308)
+....+.|+..+|.|||
T Consensus 882 ~~~f~~~~~~d~dE~e~ 898 (911)
T PF05086_consen 882 ISQFQSNGDEDTDEDED 898 (911)
T ss_pred HHHHHhcCCcccccccc
Confidence 33334445555566666
No 17
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=26.85 E-value=27 Score=36.15 Aligned_cols=18 Identities=44% Similarity=0.680 Sum_probs=14.9
Q ss_pred CCcccccCCCCCCCCCCC
Q 021716 290 GRVSEDVRSDSESDNEHE 307 (308)
Q Consensus 290 g~~~~D~Rsd~e~~~~~~ 307 (308)
|+.+.|-|||+||+||||
T Consensus 785 ~q~s~~~qsdsddsdeee 802 (1169)
T KOG1031|consen 785 GQASGDKQSDSDDSDEEE 802 (1169)
T ss_pred ccccccccccccccchhh
Confidence 567789999999888875
No 18
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=24.98 E-value=62 Score=26.71 Aligned_cols=14 Identities=14% Similarity=0.548 Sum_probs=8.1
Q ss_pred ccCCCCCCCCCCCC
Q 021716 295 DVRSDSESDNEHED 308 (308)
Q Consensus 295 D~Rsd~e~~~~~~~ 308 (308)
+.++++++||||+|
T Consensus 123 ~~~~~~~~~~~~~~ 136 (136)
T PF08507_consen 123 ALSSQQDNEDDSDD 136 (136)
T ss_pred cccccccccccCCC
Confidence 45556666666554
No 19
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=24.17 E-value=1e+02 Score=28.48 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=31.1
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCCCCCCCC
Q 021716 253 GPIYYYVFNTLLFCLLVLHIYWWVLIYRMLVKQVQARGR-VSEDVRSDSESDNEHED 308 (308)
Q Consensus 253 ~p~~~~~~~~lL~~L~~LhiyWf~lI~k~~~~~~~~~g~-~~~D~Rsd~e~~~~~~~ 308 (308)
.|..|++..+||++...+.|.||=+. =|+-+. |+ ..-| .|.++|-|.||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~kL~iYD--aDGDGDFDveD 60 (243)
T PF05279_consen 11 SFFTWFLVLALLGVWSSVAVVMFDLV---DYKSVL--GKLGIYD--ADGDGDFDVED 60 (243)
T ss_pred chHHHHHHHHHHHHHHhhHhhheehh---hHHHHh--hhheeee--ccCCCcccccc
Confidence 35668888889999999999999764 445444 22 2235 45555544443
Done!