Query 021716
Match_columns 308
No_of_seqs 136 out of 750
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 08:15:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021716.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021716hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 7.4 2E+02 0.014 15.7 3.3 20 267-286 5-24 (34)
2 d2qklb1 a.242.1.1 (B:2-91) mRN 6.1 1.7E+02 0.013 19.8 2.8 48 117-164 22-73 (90)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 6.0 1.6E+02 0.011 16.5 2.0 7 168-174 30-36 (37)
4 d2dara1 g.39.1.3 (A:53-84) PDZ 5.3 83 0.006 17.4 0.5 10 1-10 12-21 (32)
5 d1vpta_ c.66.1.25 (A:) Polymer 4.5 70 0.0051 26.9 -0.4 14 293-306 136-149 (297)
6 d1ml8a_ d.227.1.2 (A:) Hypothe 3.9 3.4E+02 0.025 18.5 3.3 29 14-42 30-58 (134)
7 d1ukka_ d.227.1.1 (A:) Hypothe 3.3 4E+02 0.029 18.3 3.2 28 15-42 40-67 (141)
8 d1t3ta7 d.139.1.1 (A:817-1033) 3.0 1.3E+02 0.0098 23.4 -0.0 20 182-201 62-83 (217)
9 d1uspa_ d.227.1.1 (A:) Organic 2.9 6.1E+02 0.044 16.9 3.9 27 16-42 40-66 (137)
10 d1qwia_ d.227.1.1 (A:) Osmotic 2.9 4E+02 0.029 18.4 2.8 29 14-42 41-69 (142)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.42 E-value=2e+02 Score=15.67 Aligned_cols=20 Identities=0% Similarity=0.026 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021716 267 LLVLHIYWWVLIYRMLVKQV 286 (308)
Q Consensus 267 L~~LhiyWf~lI~k~~~~~~ 286 (308)
=|+||+-||.-+-.++...+
T Consensus 5 rqfmnlltfgt~tg~alg~l 24 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGAL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhhh
Confidence 37889999988877766544
No 2
>d2qklb1 a.242.1.1 (B:2-91) mRNA decapping enzyme Dcp2p, N-terminal domain {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=6.14 E-value=1.7e+02 Score=19.83 Aligned_cols=48 Identities=10% Similarity=0.040 Sum_probs=31.0
Q ss_pred CCCccccchhHHHHHHHHHHHHHHHHHH-Hhh---hhhcchhhhHhHHHHHH
Q 021716 117 WPDQKIKLKLKGVYMYAAGFYTYSIFAL-MFW---ETRRADFGVSMGHHVAT 164 (308)
Q Consensus 117 ~P~~~~~~~~~~yYl~q~afy~~~~~~l-~f~---e~kRkD~~~m~~HHi~T 164 (308)
=|......-.++++.++.|+|.+.=+.. ..- .-.-|||.+++.+|+-.
T Consensus 22 ~P~eel~~~~rl~FqiE~A~WfY~Df~~~~~p~Lp~~~~~~Fa~~if~~cp~ 73 (90)
T d2qklb1 22 LPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFAHCPL 73 (90)
T ss_dssp CCGGGSSCHHHHHHHHHHHHHHHHHTTTTTCTTSCCCCHHHHHHHHHHHCTH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHCHH
Confidence 5777778888999999999997642110 000 11125788888877544
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.01 E-value=1.6e+02 Score=16.51 Aligned_cols=7 Identities=43% Similarity=0.894 Sum_probs=3.2
Q ss_pred HHHHhhh
Q 021716 168 IVLSYIF 174 (308)
Q Consensus 168 i~~SY~~ 174 (308)
+..||.+
T Consensus 30 LFssYfF 36 (37)
T d2axtl1 30 LFSSYFF 36 (37)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 3444444
No 4
>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.34 E-value=83 Score=17.36 Aligned_cols=10 Identities=40% Similarity=0.680 Sum_probs=6.0
Q ss_pred CCcccccccc
Q 021716 1 MGFVELVKSV 10 (308)
Q Consensus 1 ~~~~~~~~~~ 10 (308)
|||||=+.++
T Consensus 12 ~gFVEE~g~l 21 (32)
T d2dara1 12 IGFVEEKGAL 21 (32)
T ss_dssp SCBEESSSCE
T ss_pred cceeeecCcE
Confidence 5777755543
No 5
>d1vpta_ c.66.1.25 (A:) Polymerase regulatory subunit VP39 {Vaccinia virus [TaxId: 10245]}
Probab=4.48 E-value=70 Score=26.86 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=5.8
Q ss_pred ccccCCCCCCCCCC
Q 021716 293 SEDVRSDSESDNEH 306 (308)
Q Consensus 293 ~~D~Rsd~e~~~~~ 306 (308)
..||||++.++++.
T Consensus 136 ISDIRS~~~~~e~~ 149 (297)
T d1vpta_ 136 ISDVASAAGGNEPS 149 (297)
T ss_dssp EECCCC------CC
T ss_pred EEeccccCCCCCcc
Confidence 46999998544443
No 6
>d1ml8a_ d.227.1.2 (A:) Hypothetical protein in CRP region {Escherichia coli [TaxId: 562]}
Probab=3.86 E-value=3.4e+02 Score=18.47 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=24.1
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHHHHHH
Q 021716 14 QESYPAYEDFAVLPLFALYFPSVRFFLEK 42 (308)
Q Consensus 14 ~~~~p~~~Dl~~~~~~~~~~~~~R~~~~~ 42 (308)
+...|.|.|++....-+|..+.++.+.++
T Consensus 30 ~~~gp~P~elllaal~~C~~~~~~~~a~~ 58 (134)
T d1ml8a_ 30 GDKAPSPMEMVLMAAGGCSAIDVVSILQK 58 (134)
T ss_dssp TSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999999988888877765
No 7
>d1ukka_ d.227.1.1 (A:) Hypothetical protein MPN625 {Thermus thermophilus [TaxId: 274]}
Probab=3.27 E-value=4e+02 Score=18.32 Aligned_cols=28 Identities=11% Similarity=0.014 Sum_probs=23.4
Q ss_pred CCCCCcCchhhHHHHHHHHHHHHHHHHH
Q 021716 15 ESYPAYEDFAVLPLFALYFPSVRFFLEK 42 (308)
Q Consensus 15 ~~~p~~~Dl~~~~~~~~~~~~~R~~~~~ 42 (308)
..-|.|.|++....-+|..+.+|.+.++
T Consensus 40 ~~gp~P~elllaala~C~~~~~~~~a~~ 67 (141)
T d1ukka_ 40 GEGTNPEELIAAAHAGCFSMALAASLER 67 (141)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999988888887765
No 8
>d1t3ta7 d.139.1.1 (A:817-1033) FGAM synthase PurL, PurM-like module, C1 and C2 domains {Salmonella typhimurium [TaxId: 90371]}
Probab=2.95 E-value=1.3e+02 Score=23.39 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=14.0
Q ss_pred EEEEecccch--hHHHHhhhhh
Q 021716 182 VVLALHDASD--VFLEIGKMSK 201 (308)
Q Consensus 182 ~Vl~lHD~sD--ifL~~aK~~~ 201 (308)
+|.-.||+|| ....++.|+-
T Consensus 62 lI~s~HDiSdGGL~~aL~EMaf 83 (217)
T d1t3ta7 62 KLLAWHDRSDGGLLVTLAEMAF 83 (217)
T ss_dssp CCSEEEECCTTHHHHHHHHHHH
T ss_pred cEEEEEecCCchHHHHHHHHhc
Confidence 4789999999 4555555543
No 9
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=2.89 E-value=6.1e+02 Score=16.91 Aligned_cols=27 Identities=7% Similarity=-0.032 Sum_probs=22.2
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHHHHH
Q 021716 16 SYPAYEDFAVLPLFALYFPSVRFFLEK 42 (308)
Q Consensus 16 ~~p~~~Dl~~~~~~~~~~~~~R~~~~~ 42 (308)
.-|.|.|++....-+|..+.++.+.++
T Consensus 40 ~g~~P~elllaAlasC~~~t~~~~a~~ 66 (137)
T d1uspa_ 40 PGTNPEQLFAAGYAACFQGALGVVSRR 66 (137)
T ss_dssp SCBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999988888877655
No 10
>d1qwia_ d.227.1.1 (A:) Osmotically inducible protein OsmC {Escherichia coli [TaxId: 562]}
Probab=2.85 E-value=4e+02 Score=18.44 Aligned_cols=29 Identities=14% Similarity=0.071 Sum_probs=24.3
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHHHHHH
Q 021716 14 QESYPAYEDFAVLPLFALYFPSVRFFLEK 42 (308)
Q Consensus 14 ~~~~p~~~Dl~~~~~~~~~~~~~R~~~~~ 42 (308)
+..-|.|.|++....-+|....+|.+.++
T Consensus 41 ~~~G~~P~elllaAlasC~~~~~~~~a~~ 69 (142)
T d1qwia_ 41 GEKGTNPEELIGAAHAACFSMALSLMLGE 69 (142)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34458899999999999999999988876
Done!