Citrus Sinensis ID: 021717

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MEESASTVRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDDEVLPAIVLCI
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHccccHHHHHHHHccccHHHHHHcccccccccccccHHHHHcccccccccEEccccccHHHHHHHHHHHHcccccccEEEEEcccccccccccccccccccccEEEccccccccHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHcccccEEEccccccHHHHHHHHHHcccccEEEEccccccHHHHHHHHHccccccEEEccccccccccccccHHHHccHHcHHHHHHHHHHHHHHHccccccHHHHccccccccHHHHHHHHccccccccccccHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHccHHHHHHHHHHccHHHHHHcHHHHHHHHHHHHcccHHHHEEcHHHHHHHcccccccccEccccccHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHcHcccEEEEccccccHHHHHHHHHcccccEEEEccccEcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHccccccccccccccHHHHHHHHccccccEEEEEc
Coil and Loop (DISEMBL)
meesastvrrwEDLDNDILVKIFQSFDIFELTSGIAHvcsswrsaccdpllwkTLDLSMLISNYikiplepyvyvhghsdkQLTRILKISLSLSRGSIRTLIFHFNlyvsddqltytaercpqlkrLVMPAWNRIKKTGICKAIRMWRdlesltmpsianppyLMEEIAQNCRNFrelkimgpfdLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGlqnlevlnishcllidvplapapkkIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEeglwkddevlpaIVLCI
Flexible Loop (DISEMBL)
meesastvrrwedldndILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPqlkrlvmpawnrikKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAARLRKFLtcmedscimcqrtkndegIMRWYKYeeglwkddevlpaiVLCI
Low Complexity Region (SEG)
MEESASTVRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVplapapkkiikklDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDDEVLPAIVLCI
Disordered region (IsUnstruct)
********RRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDDEVLPAIVLC*
Disordered Region (DISOPRED)
***********EDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDDEVLPAIVLCI
Disordered Region (DISEMBL)
*********RWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDDEVLPAIVLCI
Disordered Region (DISPRO)
********RRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDDEVLPAIVLCI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEESASTVRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDDEVLPAIVLCI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	308	2.2.26 [Sep-21-2011]
Q9M2Z5	309	F-box/LRR-repeat protein	yes	no	0.974	0.970	0.684	1e-123
Q9T0C6	333	Putative F-box protein At	no	no	0.941	0.870	0.283	3e-29
Q9S9V9	449	Putative F-box/LRR-repeat	no	no	0.698	0.478	0.235	2e-09
Q9ZPE4	317	F-box protein FBW2 OS=Ara	no	no	0.688	0.668	0.237	4e-09
Q9FDX1	300	F-box protein SKIP1 OS=Ar	no	no	0.717	0.736	0.246	8e-09
Q9S9V8	246	Putative F-box/LRR-repeat	no	no	0.704	0.882	0.239	4e-08
Q9M0U6	307	Putative F-box/LRR-repeat	no	no	0.675	0.677	0.271	3e-07
Q9M0U9	302	F-box protein SKIP19 OS=A	no	no	0.694	0.708	0.253	6e-07
Q9M096	301	Putative F-box/LRR-repeat	no	no	0.701	0.717	0.227	1e-05
Q9M0U8	304	Putative F-box/LRR-repeat	no	no	0.733	0.743	0.220	0.0001

>sp|Q9M2Z5|FBL53_ARATH F-box/LRR-repeat protein At3g48880 OS=Arabidopsis thaliana GN=At3g48880 PE=2 SV=1

 Score =  442 bits (1137), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 208/304 (68%), Positives = 259/304 (85%), Gaps = 4/304 (1%)

Query: 1   MEESAST--VRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLS 58
           MEE   +  +RRWE+LD DILV+IFQ F +FELTSG+AHVC  WR+ACCDP+LWKT+DLS
Sbjct: 1   MEEEYESRRLRRWEELDTDILVRIFQKFSVFELTSGLAHVCRGWRAACCDPILWKTVDLS 60

Query: 59  MLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTA 118
            + S++IKIPLEPYVYV   SD+ LTRILK+S++LS GS RTLIFHFNL++SDDQLTYTA
Sbjct: 61  NMRSSFIKIPLEPYVYVERRSDEALTRILKLSMNLSGGSTRTLIFHFNLFLSDDQLTYTA 120

Query: 119 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFREL 178
           ERCP L+R+V+PAWNRIKKTGICKAIR+W+DLESLTMPSIANPPYL+ EIA+NC+NF+EL
Sbjct: 121 ERCPGLRRVVLPAWNRIKKTGICKAIRIWKDLESLTMPSIANPPYLLTEIAKNCKNFKEL 180

Query: 179 KIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVP 238
           KIMGPF++ FA+TL   LP +K LS+RC+ + R+AL+ ILDGL +LEVLNISH  L++  
Sbjct: 181 KIMGPFEVFFANTLITCLPNIKTLSIRCSAIKREALMKILDGLPSLEVLNISHSHLVEYS 240

Query: 239 -LAPAPKKIIKKLDRTILQKAARLRKFLTCMED-SCIMCQRTKNDEGIMRWYKYEEGLWK 296
              P  K I+++LD+TI++K ARL+KFLTCM+  +C+MCQRT+NDEGI+RWYKYEEG WK
Sbjct: 241 GWQPQQKVIVRELDKTIMEKTARLKKFLTCMDHKTCVMCQRTENDEGIVRWYKYEEGDWK 300

Query: 297 DDEV 300
            DEV
Sbjct: 301 VDEV 304

Arabidopsis thaliana (taxid: 3702)

>sp|Q9T0C6|FB230_ARATH Putative F-box protein At4g11580 OS=Arabidopsis thaliana GN=At4g11580 PE=4 SV=1

 Score =  129 bits (323), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 158/335 (47%), Gaps = 45/335 (13%)

Query: 1   MEESASTVRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSML 60
           +E ++  V  W DL+ DIL  IF   D+ ++T G + VC SW  A  +  LW T+DL+ L
Sbjct: 4   VESTSGEVSEWADLNKDILELIFNKLDVMDITMGASRVCISWFLASHNKTLWNTVDLTNL 63

Query: 61  -------ISNYIKIPLEPYVYVHGHSDKQ-----LTRIL------------KISL----- 91
                  I N+       + Y H    K      LT+I+             ISL     
Sbjct: 64  QELDVSRIFNFKDKERPIFFYKHPVDHKHGLTNLLTKIISRFFLDFFEVEGSISLMNLLV 123

Query: 92  ---SLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWR 148
               LSR + + L F+FN Y+ ++ L + AE+ P +++L +P W    +  +  A   W+
Sbjct: 124 EISKLSRMAPKNLFFNFNSYIQENGLKFAAEKMPNIEKLALPIWCYQNEKSLRFAFSQWK 183

Query: 149 DLESLTMP--SIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRC 206
           +L++L +      +  +  + + ++C N   LK +G  +   +  +  YL  LK LSLRC
Sbjct: 184 NLKTLIIAHEHSFSGRFDFKAVGESCSNLTNLKYLGRLEEYTSREIVSYLHSLKRLSLRC 243

Query: 207 TTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAA-RLRKFL 265
             ++  A+   + GL NL +LN+SHC        P    I K +D  ++  A  +L KF+
Sbjct: 244 FLVSSIAVYRFITGLPNLTILNVSHCKNPYDYFLP----IAKSIDNYVITAATQKLEKFI 299

Query: 266 TCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDDEV 300
           TC  D C++C+     +       Y   +W++DE+
Sbjct: 300 TCPHD-CMICK-----DRCRYSLSYLAEVWRNDEI 328

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=4 SV=1

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 97/238 (40%), Gaps = 23/238 (9%)

Query: 8   VRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISNYIKI 67
           +R W +L + +   I       E+      VC  W   C DP +W+ +D    I N    
Sbjct: 178 LRNWAELPSKLTSSILLRLGAIEILQNAQKVCKPWHRVCKDPSMWRKID----IDNRNDR 233

Query: 68  PLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRL 127
               Y          L  + + ++  S G +  +   +  Y ++D + Y A+R   LK L
Sbjct: 234 AAFKY---------DLESMCRHAVDRSHGGLIEIEIWY--YGTNDLIMYIADRSSNLKSL 282

Query: 128 VMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLL 187
            +     I   G+ KA+     LE L +         + +I ++C N + LK+    +++
Sbjct: 283 GLVRCFPITDEGVAKAVSKVPLLEYLEVSYCLFSGESLRDIGRSCPNLKTLKLNRAPEIM 342

Query: 188 F--------ASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV 237
           F        A  +   +P+L+ L L    L    L  ILDG  +LE L++  C  I++
Sbjct: 343 FSNSGFDDNAKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLDLRQCFNINL 400

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPE4|FBW2_ARATH F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 106/244 (43%), Gaps = 32/244 (13%)

Query: 1   MEESASTVRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSML 60
           MEE     R W++L  D L  IF    + E+ + +  VC +W  A   P  W+ +D+ + 
Sbjct: 1   MEEDCE-FRHWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELW 59

Query: 61  ISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAER 120
            + +             H    L R+L++ +  S GS+R L        +D   ++ A+ 
Sbjct: 60  SNRF-------------HQSDHLDRMLEMLIPRSAGSLRKL--SVTGLRNDSIFSFIAQH 104

Query: 121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIAN----PPYLMEEIAQNCRNFR 176
              LK L +P  + +  +G+   + +   L SLT   ++      P  ++ I ++C++ R
Sbjct: 105 AGSLKTLKVPR-SGLTNSGV---VNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLR 160

Query: 177 EL-KIMGPFDLLF-------ASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLN 228
           E  + M P D+         A  +   +PKLK L +    ++ + ++ IL     LE L 
Sbjct: 161 EFCRNMHPLDVASVVSHDDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLE 220

Query: 229 ISHC 232
           +  C
Sbjct: 221 LRGC 224

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FDX1|SKIP1_ARATH F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKIP1 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 108/256 (42%), Gaps = 35/256 (13%)

Query: 1   MEESASTVRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSML 60
           MEE  S    W  L  +IL+ I     I EL +G   V  SW + C DP LW   DL   
Sbjct: 1   MEEDGSD---WGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPW 57

Query: 61  ISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAER 120
             +Y   P   +++     ++++  +L+  +  S G +  +      + SD  L+Y A+R
Sbjct: 58  FDSY---PESTHLW-SPEFEQKVDLMLRSVVDWSEGGLTKIRVR---HCSDHALSYAADR 110

Query: 121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMP---SIANPPYLMEEIAQNCRNFRE 177
           CP L+ L + +   +    + K     R L+ L +     I++   +M  I +NC N R 
Sbjct: 111 CPNLQVLAIRSSPNVTDASMTKIAFRCRSLKELDISYCHEISHDTLVM--IGRNCPNLRI 168

Query: 178 LK---------IMGPFDLLF-----------ASTLNMYLPKLKVLSLRCTTLNRDALILI 217
           LK          +G     +           A  +  ++  L+ L ++ + L+   L  I
Sbjct: 169 LKRNLMDWSSRHIGSVPTEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASI 228

Query: 218 LDGLQNLEVLNISHCL 233
            +G   LE L++  C+
Sbjct: 229 CEGCPKLEYLDLFGCV 244

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9V8|FBL9_ARATH Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana GN=FBL9 PE=4 SV=1

 Score = 58.9 bits (141), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 101/234 (43%), Gaps = 17/234 (7%)

Query: 9   RRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISNYIKIP 68
           R W +L  ++   I       E+      VC SWR  C DP +W+ +D+   I   +   
Sbjct: 19  RNWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIR--IKENLVNS 76

Query: 69  LEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLV 128
           +E +  +     +        ++ LS+G +  L  + +  V+   L Y A+R   L+RL 
Sbjct: 77  VELFYVIEPLCCR--------AVDLSQGGL--LEINIDYLVNTSFLNYIADRSSNLRRLG 126

Query: 129 MPAWNRIKKTGICKAIRMWRDLESLTMPSIAN-PPYLMEEIAQNCRNFRELKIMGPFDL- 186
           +     +   G+ +A      LE L +   ++     ++ + Q+C N R LK+    D+ 
Sbjct: 127 VVDCAPVLSRGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNCTGDVK 186

Query: 187 ---LFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV 237
                A  +   +P L+ L L    L+   L  IL+G  +L+ L +  CL I++
Sbjct: 187 CCDKVALAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCLNINI 240

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0U6|FBL22_ARATH Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana GN=FBL22 PE=4 SV=1

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 97/236 (41%), Gaps = 28/236 (11%)

Query: 11  WEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISNYIKIPLE 70
           W +L  D+L  I       E+      VC SWR    DPL+W+ +D+  L   Y    +E
Sbjct: 27  WAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMRNLRRLYCIYAME 86

Query: 71  PYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNL----YVSDDQLTYTAERCPQLKR 126
                            +  + LS+G     +  FN+    + +   L Y AER   L+R
Sbjct: 87  A--------------CCRHVVDLSQGG----LLEFNIDQWRFQTTSLLNYMAERSSNLRR 128

Query: 127 LVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDL 186
           L +    +I   GI +AI     LE L +   +      + I Q C N + LK++G +  
Sbjct: 129 LRVKG-GQITSVGIFEAIVKLPLLEELELLYCSIEEEHFKTIGQACPNLKTLKLVGFWSH 187

Query: 187 LFAS-----TLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV 237
           L  S      +   +P L  L L    L    L  ILDG  +LE L++  C  I++
Sbjct: 188 LNESDNDALAIADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFNINL 243

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0U9|SKI19_ARATH F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 101/245 (41%), Gaps = 31/245 (12%)

Query: 1   MEESASTVRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSML 60
           ME   ST   W +L  ++   I       E+      VC SWR  C DP +W+ +D+  L
Sbjct: 11  MEVGEST--NWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNL 68

Query: 61  ISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTL-IFHFNLYVSDDQLTYTAE 119
                   L+   Y        L  + + ++  S+G +  + I++F      D L Y A 
Sbjct: 69  GD------LDDMDY-------NLEIMCRHAVDRSQGGLVDIGIWYFGTV---DLLNYIAH 112

Query: 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELK 179
           R   L+ L +   ++I   G  +A+ +   LE L +   +     +  + Q C N + LK
Sbjct: 113 RSSNLRSLRLIRCSQITDDGFVEAV-VKLPLEELELSYCSFSVESLRVVGQCCLNMKTLK 171

Query: 180 I-------MGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHC 232
           +            L  A T    +PKL+ L L    L+   L  ILD   NLE L++  C
Sbjct: 172 LNKHPQKENDDDALAIAET----MPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRC 227

Query: 233 LLIDV 237
             +++
Sbjct: 228 FNVNL 232

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M096|FBL19_ARATH Putative F-box/LRR-repeat protein 19 OS=Arabidopsis thaliana GN=FBL19 PE=4 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 98/246 (39%), Gaps = 30/246 (12%)

Query: 11  WEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISNYIKIPLE 70
           W +L  + L+ IF      +   G   V  +W +AC DP L    DL    + ++  P  
Sbjct: 20  WSELTRECLLDIFSRLSQEQRWIGPMLVSKNWMNACYDPTLNTIFDLE---TRFLSFPES 76

Query: 71  PYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMP 130
              +     DK +   L+  +  S G +  +      + ++  L+Y AERCP L+ L + 
Sbjct: 77  INWWTPEFEDK-VDSFLRSVVDRSEGGLTEIRIR---HCTERSLSYAAERCPNLEVLWIK 132

Query: 131 AWNRIKKTGICKAIRMWRDLESLTMP-SIANPPYLMEEIAQNCRNFRELK---------- 179
               +    + K      +L  L +  S       +  + ++C+N + LK          
Sbjct: 133 NCPNVTDASMEKIAMNCPNLRELDISYSYGITHESLITLGRSCQNLKILKRNLLPRLGPS 192

Query: 180 ---IMGPFDLLF---------ASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVL 227
              I+ P D L          A  +  Y+ +LK L +R +TL    L  +  G  NLE +
Sbjct: 193 LPTIVAPLDYLATFPRYGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYM 252

Query: 228 NISHCL 233
           ++  C+
Sbjct: 253 DLRGCI 258

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0U8|FBL21_ARATH Putative F-box/LRR-repeat protein 21 OS=Arabidopsis thaliana GN=FBL21 PE=4 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 109/277 (39%), Gaps = 51/277 (18%)

Query: 9   RRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDL-SMLISNYIKI 67
           R W DL  ++   I     + ++      VC  WR  C DP +W+ ++    L+ N+  +
Sbjct: 44  RNWVDLPPELTTSILLRLSLTDILDNAQKVCKEWRRICKDPSMWRKINTRDCLMYNFDFV 103

Query: 68  PLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRL 127
            +  ++                 + LS+G +  +    + ++SD  L+Y  +R  +   L
Sbjct: 104 SMCRHI-----------------VDLSQGGLLEINVDEH-FLSDSLLSYITDRNLRSLGL 145

Query: 128 VMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKI------- 180
            M  + R+ K G+  AI     LE+L + + +     ++ I   C   + LK+       
Sbjct: 146 GM-CFPRVTKLGVVNAIAKIPLLETLEV-THSCIKLDLKAIGHACPQLKTLKLNSLGRLW 203

Query: 181 -------------MGPFDL-LFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEV 226
                        MGP +    A  +   +PKL  L L    L    L  ILDG  +LE 
Sbjct: 204 PASDKYDSNVLDDMGPLECDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPHLEH 263

Query: 227 LNISHCLLIDVPLAPAPKKIIKKLDRTILQKAARLRK 263
           L++  C  I          ++  L++  L+    LR+
Sbjct: 264 LDVRKCFRI---------SLVGNLEKRCLEMIKELRR 291

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
255539483	316	conserved hypothetical protein [Ricinus	0.974	0.949	0.83	1e-146
388512841	305	unknown [Medicago truncatula]	0.974	0.983	0.763	1e-133
217074224	305	unknown [Medicago truncatula]	0.974	0.983	0.756	1e-132
356575953	305	PREDICTED: F-box/LRR-repeat protein At3g	0.974	0.983	0.753	1e-132
356535883	304	PREDICTED: F-box/LRR-repeat protein At3g	0.967	0.980	0.751	1e-130
225470694	321	PREDICTED: F-box/LRR-repeat protein At3g	0.970	0.931	0.722	1e-128
297741053	310	unnamed protein product [Vitis vinifera]	0.970	0.964	0.722	1e-128
224122416	291	predicted protein [Populus trichocarpa]	0.928	0.982	0.749	1e-125
224134733	291	predicted protein [Populus trichocarpa]	0.928	0.982	0.728	1e-122
297816094	309	F-box family protein [Arabidopsis lyrata	0.974	0.970	0.687	1e-122

>gi|255539483|ref|XP_002510806.1| conserved hypothetical protein [Ricinus communis] gi|223549921|gb|EEF51408.1| conserved hypothetical protein [Ricinus communis]

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 249/300 (83%), Positives = 278/300 (92%)

Query: 1   MEESASTVRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSML 60
           MEE  S VRRWEDLD DILVKIFQSFDIF+LTSGIAHVCSSWR ACCDPLLWKTLDLSML
Sbjct: 12  MEEGDSLVRRWEDLDTDILVKIFQSFDIFQLTSGIAHVCSSWRLACCDPLLWKTLDLSML 71

Query: 61  ISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAER 120
            SN+IKIPLEPYVYV G SDK LTR+LKISL+LS+G+I +LIFHFNLYVSD+QLTYTAER
Sbjct: 72  KSNFIKIPLEPYVYVDGRSDKTLTRVLKISLNLSQGNITSLIFHFNLYVSDEQLTYTAER 131

Query: 121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKI 180
           CP+L+RLV+PAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYL+EEIA NCRNF ELKI
Sbjct: 132 CPRLRRLVLPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLIEEIANNCRNFSELKI 191

Query: 181 MGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLA 240
           MGPF++ FASTL  YLPKL+VLSLRC+ L +DALILILD LQ+LEVLNISHCLLI+VP  
Sbjct: 192 MGPFEIFFASTLAAYLPKLRVLSLRCSMLIKDALILILDSLQSLEVLNISHCLLIEVPAP 251

Query: 241 PAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDDEV 300
           PAPK+II++LD TIL+KA+RLR+FLTCM++SCIMCQRTK+DEG+MRWYKYEEGLWK DEV
Sbjct: 252 PAPKRIIRELDHTILEKASRLREFLTCMDESCIMCQRTKSDEGLMRWYKYEEGLWKTDEV 311

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512841|gb|AFK44482.1| unknown [Medicago truncatula]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/300 (76%), Positives = 262/300 (87%)

Query: 1   MEESASTVRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSML 60
           ME+  S  RRWEDLD DILVKIFQ  DIFELTSGIAHVCS+WR ACCDPLLWKTLDLSML
Sbjct: 1   MEDVVSNTRRWEDLDTDILVKIFQLLDIFELTSGIAHVCSAWRMACCDPLLWKTLDLSML 60

Query: 61  ISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAER 120
            SN+IKIPLEP+VYV   SDK+LTR+LKISL+LSR SI TLIFHFNLYVSDDQLTYTAER
Sbjct: 61  RSNFIKIPLEPFVYVDERSDKKLTRLLKISLNLSRMSIVTLIFHFNLYVSDDQLTYTAER 120

Query: 121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKI 180
           CP LKRLV+PAWNRIK+TG+CKAIR W++LESLTMPSIANPPY +EEIA NC+NF ELKI
Sbjct: 121 CPHLKRLVLPAWNRIKRTGMCKAIRCWKELESLTMPSIANPPYFLEEIATNCKNFSELKI 180

Query: 181 MGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLA 240
           MGP D+ FASTL  ++PKL+ LSLRC+TL RD LILILD L++LEVLNISHC+L++    
Sbjct: 181 MGPCDIFFASTLAAFVPKLRFLSLRCSTLYRDVLILILDSLEHLEVLNISHCILMECLPP 240

Query: 241 PAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDDEV 300
           P  KKII ++D TI QKA+RLR+F+TCM+DSCIMCQRT+ DEGI+RWYKYEEG WK+DEV
Sbjct: 241 PQHKKIINEIDSTIRQKASRLREFITCMDDSCIMCQRTRTDEGIVRWYKYEEGFWKEDEV 300

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074224|gb|ACJ85472.1| unknown [Medicago truncatula]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/300 (75%), Positives = 260/300 (86%)

Query: 1   MEESASTVRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSML 60
           ME+  S  RRWEDLD DILVKIFQ  DIFELTSGIAHVCS+WR  CCDPLLWKTLDLSML
Sbjct: 1   MEDVVSNTRRWEDLDTDILVKIFQLLDIFELTSGIAHVCSAWRMTCCDPLLWKTLDLSML 60

Query: 61  ISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAER 120
            SN+IKIPLEP+VYV   SDK+LTR+LKISL+LSR SI TLIFHFNLYVSDDQLTYTAER
Sbjct: 61  RSNFIKIPLEPFVYVDERSDKKLTRLLKISLNLSRMSIVTLIFHFNLYVSDDQLTYTAER 120

Query: 121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKI 180
           CP LKRLV+PAWNRIK+TG+CKAIR W++LESLTMPSIANPPY +EEIA NC+NF ELKI
Sbjct: 121 CPHLKRLVLPAWNRIKRTGMCKAIRCWKELESLTMPSIANPPYFLEEIATNCKNFSELKI 180

Query: 181 MGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLA 240
           MGP D+ FASTL  ++PKL+ LSLRC+TL RD LILILD L++LEV NISHC+L++    
Sbjct: 181 MGPCDIFFASTLAAFVPKLRFLSLRCSTLYRDVLILILDSLEHLEVFNISHCILMECLPP 240

Query: 241 PAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDDEV 300
           P  KKII ++D TI QKA+RLR+F+TCM+DSCIMCQRT+ DEGI+RWYKYEEG WK+DEV
Sbjct: 241 PQHKKIINEIDSTIRQKASRLREFITCMDDSCIMCQRTRTDEGIVRWYKYEEGFWKEDEV 300

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575953|ref|XP_003556100.1| PREDICTED: F-box/LRR-repeat protein At3g48880-like [Glycine max]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/300 (75%), Positives = 266/300 (88%)

Query: 1   MEESASTVRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSML 60
           ME++ S +RRWEDLD DILVKIFQ  DIFELTSGI+ VCS+WR ACCDPLLWKTLDLSML
Sbjct: 1   MEDNDSYIRRWEDLDIDILVKIFQLLDIFELTSGISRVCSAWRMACCDPLLWKTLDLSML 60

Query: 61  ISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAER 120
            SN+IKIPLEP+VYV G SD+ LTRILKISLSLS+ SI TLIFHFNLYVSD+QLTYTAER
Sbjct: 61  RSNFIKIPLEPFVYVDGRSDRTLTRILKISLSLSQQSIMTLIFHFNLYVSDEQLTYTAER 120

Query: 121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKI 180
           CPQL+RLV+PAWNRIKK G+CKAIR W++LESLTMPSIANPPY++EEI+ +C+NF ELKI
Sbjct: 121 CPQLRRLVLPAWNRIKKPGMCKAIRGWKELESLTMPSIANPPYILEEISTHCKNFSELKI 180

Query: 181 MGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLA 240
           MGP D+ FAS+L  +LPKL++LSLRC+ L +D LILILD LQ+LEVLNISHC+L++   A
Sbjct: 181 MGPCDIFFASSLAAFLPKLRILSLRCSMLYKDVLILILDNLQHLEVLNISHCVLMEALPA 240

Query: 241 PAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDDEV 300
           P  K+IIK++D TI QKA+RLR+FLTCMEDSC+MCQRT+ DEG++RWYKYEEGLWK DEV
Sbjct: 241 PQQKRIIKEIDVTIRQKASRLREFLTCMEDSCVMCQRTRTDEGLIRWYKYEEGLWKTDEV 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535883|ref|XP_003536472.1| PREDICTED: F-box/LRR-repeat protein At3g48880-like [Glycine max]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 224/298 (75%), Positives = 261/298 (87%)

Query: 3   ESASTVRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLIS 62
           E    +RRWEDLD DILVKIFQ  DIFELTSGI+ VCS+WR ACCDPLLWKTLDLSML S
Sbjct: 2   EDNDYIRRWEDLDIDILVKIFQLLDIFELTSGISRVCSAWRLACCDPLLWKTLDLSMLRS 61

Query: 63  NYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCP 122
           N+IKIPLEP+VYV G SD+ LTRILKISLSLS+ SI TLIFHFNLYVSD+QLTYTAERCP
Sbjct: 62  NFIKIPLEPFVYVDGRSDRTLTRILKISLSLSQQSIMTLIFHFNLYVSDEQLTYTAERCP 121

Query: 123 QLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMG 182
           QL+RLV+PAWNRIKK G+CKAIR W++LESLTMP IANPPY++EEI+ +C+NF ELKIMG
Sbjct: 122 QLRRLVLPAWNRIKKPGMCKAIRGWKELESLTMPCIANPPYILEEISTHCKNFSELKIMG 181

Query: 183 PFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPA 242
           P D+ FAS+L  +LPKL+VLSLRC+ L +D LILILD LQ+LEVLNISHC+L++   AP 
Sbjct: 182 PCDIFFASSLAAFLPKLRVLSLRCSMLYKDVLILILDSLQHLEVLNISHCVLMEALPAPQ 241

Query: 243 PKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDDEV 300
            K+IIK++D TI QKA+RLR+FLTCMEDSC+MCQRT+ DEG++RWYKYEEGLWK DEV
Sbjct: 242 QKRIIKEIDVTIRQKASRLREFLTCMEDSCVMCQRTRTDEGLIRWYKYEEGLWKTDEV 299

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470694|ref|XP_002262912.1| PREDICTED: F-box/LRR-repeat protein At3g48880 [Vitis vinifera] gi|147841766|emb|CAN62210.1| hypothetical protein VITISV_008091 [Vitis vinifera]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/306 (72%), Positives = 263/306 (85%), Gaps = 7/306 (2%)

Query: 1   MEESASTVRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSML 60
           ME+  S VR+WED+D DILVKIFQSFDIFELTSGIAHVC  WR A CDP LWKTLDL+ L
Sbjct: 12  MEDGQSVVRKWEDMDIDILVKIFQSFDIFELTSGIAHVCRVWRMAACDPFLWKTLDLTKL 71

Query: 61  ISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAER 120
            S++IKIPLEPYVYV   SDK LTR+LKISL+LS+G+IR+LIFHFNLY++DDQLTY AER
Sbjct: 72  ESHFIKIPLEPYVYVSDQSDKSLTRLLKISLNLSQGNIRSLIFHFNLYLNDDQLTYIAER 131

Query: 121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKI 180
           CP+L+RLV+PAWNRIKK+GICKAIRMW+DLESLTMPSI NPPYLMEEI++NC NFRELKI
Sbjct: 132 CPRLRRLVLPAWNRIKKSGICKAIRMWKDLESLTMPSIENPPYLMEEISKNCNNFRELKI 191

Query: 181 MGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV--- 237
           MGP  + FA+TL  +LP+LK+LSLRC+ L ++AL+ IL+GL++LEVLNISHCLLID    
Sbjct: 192 MGPCHVFFANTLVAFLPRLKILSLRCSVLLKEALLSILEGLKHLEVLNISHCLLIDSQRM 251

Query: 238 ---PLAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGL 294
              PL P  K+++K+LD +IL+ A+RLR+FLTCM DSC MC+RT NDEG+MRWYKYEEGL
Sbjct: 252 NAQPLPPM-KRVMKELDESILKAASRLREFLTCMNDSCTMCERTINDEGLMRWYKYEEGL 310

Query: 295 WKDDEV 300
           WK DE 
Sbjct: 311 WKTDEA 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741053|emb|CBI31784.3| unnamed protein product [Vitis vinifera]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/306 (72%), Positives = 263/306 (85%), Gaps = 7/306 (2%)

Query: 1   MEESASTVRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSML 60
           ME+  S VR+WED+D DILVKIFQSFDIFELTSGIAHVC  WR A CDP LWKTLDL+ L
Sbjct: 1   MEDGQSVVRKWEDMDIDILVKIFQSFDIFELTSGIAHVCRVWRMAACDPFLWKTLDLTKL 60

Query: 61  ISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAER 120
            S++IKIPLEPYVYV   SDK LTR+LKISL+LS+G+IR+LIFHFNLY++DDQLTY AER
Sbjct: 61  ESHFIKIPLEPYVYVSDQSDKSLTRLLKISLNLSQGNIRSLIFHFNLYLNDDQLTYIAER 120

Query: 121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKI 180
           CP+L+RLV+PAWNRIKK+GICKAIRMW+DLESLTMPSI NPPYLMEEI++NC NFRELKI
Sbjct: 121 CPRLRRLVLPAWNRIKKSGICKAIRMWKDLESLTMPSIENPPYLMEEISKNCNNFRELKI 180

Query: 181 MGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV--- 237
           MGP  + FA+TL  +LP+LK+LSLRC+ L ++AL+ IL+GL++LEVLNISHCLLID    
Sbjct: 181 MGPCHVFFANTLVAFLPRLKILSLRCSVLLKEALLSILEGLKHLEVLNISHCLLIDSQRM 240

Query: 238 ---PLAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGL 294
              PL P  K+++K+LD +IL+ A+RLR+FLTCM DSC MC+RT NDEG+MRWYKYEEGL
Sbjct: 241 NAQPLPPM-KRVMKELDESILKAASRLREFLTCMNDSCTMCERTINDEGLMRWYKYEEGL 299

Query: 295 WKDDEV 300
           WK DE 
Sbjct: 300 WKTDEA 305

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122416|ref|XP_002318828.1| predicted protein [Populus trichocarpa] gi|222859501|gb|EEE97048.1| predicted protein [Populus trichocarpa]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/287 (74%), Positives = 252/287 (87%), Gaps = 1/287 (0%)

Query: 14  LDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISNYIKIPLEPYV 73
           +D DILVKIFQS  +FELTSGIAHVCS+WR A CDP LWKTLDLSML SN+IKIPLEPYV
Sbjct: 1   MDIDILVKIFQSLTVFELTSGIAHVCSAWRLAACDPWLWKTLDLSMLESNFIKIPLEPYV 60

Query: 74  YVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWN 133
           YVHGHSDK LTRILKISLSLSRG+I +L FHFNLYVS+D LTYTA+RCP+L+RLV+PAWN
Sbjct: 61  YVHGHSDKTLTRILKISLSLSRGNITSLFFHFNLYVSEDHLTYTAQRCPRLRRLVLPAWN 120

Query: 134 RIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLN 193
           R++ T + KAI +W+DLESLTMPSI N P L++ IA NCRNFRELKIMGPFD+ FAS+L 
Sbjct: 121 RVE-TVMIKAIDLWKDLESLTMPSIVNSPRLVQAIATNCRNFRELKIMGPFDIYFASSLA 179

Query: 194 MYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRT 253
            YLP LKVLSLRC+ L +D LI ILD L+ L+VLNISHCLLI +P  PAP +I+++LD+T
Sbjct: 180 TYLPTLKVLSLRCSKLYKDTLIFILDNLRCLDVLNISHCLLIQIPPPPAPGRIVRRLDKT 239

Query: 254 ILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDDEV 300
           IL+KA+RLRKFLTCM D+CIMCQRT+NDEG+MRWYKYE+GLWK+DEV
Sbjct: 240 ILEKASRLRKFLTCMRDTCIMCQRTRNDEGLMRWYKYEKGLWKEDEV 286

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134733|ref|XP_002321893.1| predicted protein [Populus trichocarpa] gi|222868889|gb|EEF06020.1| predicted protein [Populus trichocarpa]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/287 (72%), Positives = 246/287 (85%), Gaps = 1/287 (0%)

Query: 14  LDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISNYIKIPLEPYV 73
           +D DILVKIFQS  +FELTSGIAHVCSSWR A CDP LW+TLDLSML SN+IKIPLEPYV
Sbjct: 1   MDIDILVKIFQSLTVFELTSGIAHVCSSWRLAACDPFLWRTLDLSMLKSNFIKIPLEPYV 60

Query: 74  YVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWN 133
           YVHGHSDK LTR LKISLSLSRG+I +L FHFNLYVS+D LTYTA+RCP+LKRLV+PAWN
Sbjct: 61  YVHGHSDKTLTRFLKISLSLSRGNITSLFFHFNLYVSEDHLTYTAQRCPRLKRLVLPAWN 120

Query: 134 RIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLN 193
           R++ T + KAI +W+DLESLTMPSI N P L++ IA NCR F ELKIMGPFD+ FAS+L 
Sbjct: 121 RVE-TVMIKAIELWKDLESLTMPSIVNSPRLVQAIATNCRKFSELKIMGPFDIYFASSLV 179

Query: 194 MYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRT 253
            YLP LKVLSLRC+ L +D LI +LD L  LEVLNISHCLLI+VP  PAP++I+++LD+T
Sbjct: 180 TYLPTLKVLSLRCSMLYKDTLIFVLDNLCCLEVLNISHCLLIEVPPPPAPRRIVRQLDKT 239

Query: 254 ILQKAARLRKFLTCMEDSCIMCQRTKNDEGIMRWYKYEEGLWKDDEV 300
           IL+KA+ L  FL CM D+CIMCQ+T+NDEG+MRWYKY+EGLWK+DEV
Sbjct: 240 ILEKASHLHDFLACMSDTCIMCQKTRNDEGLMRWYKYDEGLWKEDEV 286

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816094|ref|XP_002875930.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297321768|gb|EFH52189.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/304 (68%), Positives = 259/304 (85%), Gaps = 4/304 (1%)

Query: 1   MEESAST--VRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLS 58
           MEE   +  VRRWE+LD DILV+IFQ F +FELTSG+AHVC  WR+ACCDP+LWKTLDLS
Sbjct: 1   MEEEYESRRVRRWEELDTDILVRIFQKFSVFELTSGLAHVCRGWRAACCDPILWKTLDLS 60

Query: 59  MLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTA 118
            + S++IKIPLEPYVYV   SD+ LTRILK+S++LS G+ RTLIFHFNL++SDDQLTYTA
Sbjct: 61  HMRSSFIKIPLEPYVYVERRSDEALTRILKLSMNLSGGNTRTLIFHFNLFLSDDQLTYTA 120

Query: 119 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFREL 178
           ERCP L+R+V+PAWNRIKKTGICKAIR+W+DLESLTMPSIANPPYL+ EIA+NC+NF+EL
Sbjct: 121 ERCPGLRRVVLPAWNRIKKTGICKAIRIWKDLESLTMPSIANPPYLLTEIAKNCKNFKEL 180

Query: 179 KIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVP 238
           KIMGPF++ FA+TL   LP +K LS+RC+ + R+AL+ ILDGL +LEVLNISH  L++  
Sbjct: 181 KIMGPFEVFFANTLITCLPNIKTLSIRCSAIKREALMKILDGLPSLEVLNISHSHLVEYS 240

Query: 239 -LAPAPKKIIKKLDRTILQKAARLRKFLTCMED-SCIMCQRTKNDEGIMRWYKYEEGLWK 296
              P  K I+++LD+TI++K ARL+KFLTCME  +C+MCQRT++DEGI+RWYKYEEG WK
Sbjct: 241 GWQPQQKVIVRELDKTIMEKTARLKKFLTCMEHKTCVMCQRTESDEGIVRWYKYEEGDWK 300

Query: 297 DDEV 300
            DEV
Sbjct: 301 VDEV 304

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
TAIR|locus:2099443	309	AT3G48880 "AT3G48880" [Arabido	0.974	0.970	0.671	4.6e-112
TAIR|locus:2139697	333	AT4G11580 [Arabidopsis thalian	0.75	0.693	0.270	3.5e-20
TAIR|locus:1005716270	246	AT4G05497 "AT4G05497" [Arabido	0.701	0.878	0.259	2.9e-10
TAIR|locus:2174398	300	SKIP1 "SKP1 interacting partne	0.542	0.556	0.280	2.1e-09
TAIR|locus:2115979	307	AT4G05490 "AT4G05490" [Arabido	0.681	0.684	0.273	2.3e-09
TAIR|locus:2122308	317	FBW2 "AT4G08980" [Arabidopsis	0.698	0.678	0.236	1.3e-08
TAIR|locus:2115949	302	AT4G05460 "AT4G05460" [Arabido	0.707	0.721	0.253	9.8e-08
UNIPROTKB|Q58DG6	436	FBXL20 "F-box/LRR-repeat prote	0.454	0.321	0.256	1.4e-05
UNIPROTKB|Q96IG2	436	FBXL20 "F-box/LRR-repeat prote	0.454	0.321	0.256	1.4e-05
MGI|MGI:1919444	436	Fbxl20 "F-box and leucine-rich	0.454	0.321	0.256	1.4e-05

TAIR|locus:2099443 AT3G48880 "AT3G48880" [Arabidopsis thaliana (taxid:3702)]

 Score = 1106 (394.4 bits), Expect = 4.6e-112, P = 4.6e-112
 Identities = 204/304 (67%), Positives = 252/304 (82%)

Query:     1 MEESAST--VRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLS 58
             MEE   +  +RRWE+LD DILV+IFQ F +FELTSG+AHVC  WR+ACCDP+LWKT+DLS
Sbjct:     1 MEEEYESRRLRRWEELDTDILVRIFQKFSVFELTSGLAHVCRGWRAACCDPILWKTVDLS 60

Query:    59 MLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTA 118
              + S++IKIPLEPYVYV   SD+ LTRILK+S++LS GS RTLIFHFNL++SDDQLTYTA
Sbjct:    61 NMRSSFIKIPLEPYVYVERRSDEALTRILKLSMNLSGGSTRTLIFHFNLFLSDDQLTYTA 120

Query:   119 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFREL 178
             ERCP L+R+V+PAWNRIKKTGICKAIR+W+DLESLTMPSIANPPYL+ EIA+NC+NF+EL
Sbjct:   121 ERCPGLRRVVLPAWNRIKKTGICKAIRIWKDLESLTMPSIANPPYLLTEIAKNCKNFKEL 180

Query:   179 KIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVX 238
             KIMGPF++ FA+TL   LP +K LS+RC+ + R+AL+ ILDGL +LEVLNISH  L++  
Sbjct:   181 KIMGPFEVFFANTLITCLPNIKTLSIRCSAIKREALMKILDGLPSLEVLNISHSHLVEYS 240

Query:   239 XXX-XXXXXXXXXDRTILQKAARLRKFLTCMED-SCIMCQRTKNDEGIMRWYKYEEGLWK 296
                          D+TI++K ARL+KFLTCM+  +C+MCQRT+NDEGI+RWYKYEEG WK
Sbjct:   241 GWQPQQKVIVRELDKTIMEKTARLKKFLTCMDHKTCVMCQRTENDEGIVRWYKYEEGDWK 300

Query:   297 DDEV 300
              DEV
Sbjct:   301 VDEV 304

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2139697 AT4G11580 [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 67/248 (27%), Positives = 122/248 (49%)

Query:    57 LSMLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTY 116
             L+ L++  I      +  V G S   +  +++IS  LSR + + L F+FN Y+ ++ L +
Sbjct:    94 LTNLLTKIISRFFLDFFEVEG-SISLMNLLVEIS-KLSRMAPKNLFFNFNSYIQENGLKF 151

Query:   117 TAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPS--IANPPYLMEEIAQNCRN 174
              AE+ P +++L +P W    +  +  A   W++L++L +      +  +  + + ++C N
Sbjct:   152 AAEKMPNIEKLALPIWCYQNEKSLRFAFSQWKNLKTLIIAHEHSFSGRFDFKAVGESCSN 211

Query:   175 FRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 234
                LK +G  +   +  +  YL  LK LSLRC  ++  A+   + GL NL +LN+SHC  
Sbjct:   212 LTNLKYLGRLEEYTSREIVSYLHSLKRLSLRCFLVSSIAVYRFITGLPNLTILNVSHCK- 270

Query:   235 IDVXXXXXXXXXXXXXDRTILQKAA-RLRKFLTCMEDSCIMCQRTKNDEGIMRW-YKYEE 292
                             D  ++  A  +L KF+TC  D C++C+    D    R+   Y  
Sbjct:   271 ---NPYDYFLPIAKSIDNYVITAATQKLEKFITCPHD-CMICK----DR--CRYSLSYLA 320

Query:   293 GLWKDDEV 300
              +W++DE+
Sbjct:   321 EVWRNDEI 328

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:1005716270 AT4G05497 "AT4G05497" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 2.9e-10, P = 2.9e-10
 Identities = 61/235 (25%), Positives = 103/235 (43%)

Query:     9 RRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISNYIKIP 68
             R W +L  ++   I       E+      VC SWR  C DP +W+ +D+ +   N +   
Sbjct:    19 RNWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIK-ENLVN-S 76

Query:    69 LEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLV 128
             +E + YV       +  +   ++ LS+G +  L  + +  V+   L Y A+R   L+RL 
Sbjct:    77 VELF-YV-------IEPLCCRAVDLSQGGL--LEINIDYLVNTSFLNYIADRSSNLRRLG 126

Query:   129 MPAWNRIKKTGICKAIRMWRDLESL--TMPSIANPPYLMEEIAQNCRNFRELKIMGPFDL 186
             +     +   G+ +A      LE L  T  S      L + + Q+C N R LK+    D+
Sbjct:   127 VVDCAPVLSRGVVEAAMKLPLLEELDITYKSSIREQEL-KVVGQSCPNLRTLKLNCTGDV 185

Query:   187 L----FASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV 237
                   A  +   +P L+ L L    L+   L  IL+G  +L+ L +  CL I++
Sbjct:   186 KCCDKVALAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCLNINI 240

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2174398 SKIP1 "SKP1 interacting partner 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 51/182 (28%), Positives = 82/182 (45%)

Query:     1 MEESASTVRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSML 60
             MEE  S    W  L  +IL+ I     I EL +G   V  SW + C DP LW   DL   
Sbjct:     1 MEEDGSD---WGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPW 57

Query:    61 ISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAER 120
               +Y   P   +++     ++++  +L+  +  S G +  +      + SD  L+Y A+R
Sbjct:    58 FDSY---PESTHLW-SPEFEQKVDLMLRSVVDWSEGGLTKIRVR---HCSDHALSYAADR 110

Query:   121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMP---SIANPPYLMEEIAQNCRNFRE 177
             CP L+ L + +   +    + K     R L+ L +     I++   +M  I +NC N R 
Sbjct:   111 CPNLQVLAIRSSPNVTDASMTKIAFRCRSLKELDISYCHEISHDTLVM--IGRNCPNLRI 168

Query:   178 LK 179
             LK
Sbjct:   169 LK 170

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA

GO:0007165 "signal transduction" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

TAIR|locus:2115979 AT4G05490 "AT4G05490" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 64/234 (27%), Positives = 99/234 (42%)

Query:    11 WEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISNYIKIPLE 70
             W +L  D+L  I       E+      VC SWR    DPL+W+ +D+  L   Y      
Sbjct:    27 WAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMRNLRRLYC----- 81

Query:    71 PYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNL--YVSDDQLTYTAERCPQLKRLV 128
               +Y        +    +  + LS+G +  L F+ +   + +   L Y AER   L+RL 
Sbjct:    82 --IYA-------MEACCRHVVDLSQGGL--LEFNIDQWRFQTTSLLNYMAERSSNLRRLR 130

Query:   129 MPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLF 188
             +    +I   GI +AI     LE L +   +      + I Q C N + LK++G +  L 
Sbjct:   131 VKG-GQITSVGIFEAIVKLPLLEELELLYCSIEEEHFKTIGQACPNLKTLKLVGFWSHLN 189

Query:   189 ASTLNMY-----LPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV 237
              S  +       +P L  L L    L    L  ILDG  +LE L++  C  I++
Sbjct:   190 ESDNDALAIADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFNINL 243

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2122308 FBW2 "AT4G08980" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 57/241 (23%), Positives = 102/241 (42%)

Query:     1 MEESASTVRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSML 60
             MEE     R W++L  D L  IF    + E+ + +  VC +W  A   P  W+ +D+ + 
Sbjct:     1 MEEDCE-FRHWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELW 59

Query:    61 ISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAER 120
              + +             H    L R+L++ +  S GS+R L     L  +D   ++ A+ 
Sbjct:    60 SNRF-------------HQSDHLDRMLEMLIPRSAGSLRKLSVT-GLR-NDSIFSFIAQH 104

Query:   121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIAN-PPYLMEEIAQNCRNFREL- 178
                LK L +P  + +  +G+         L  L +       P  ++ I ++C++ RE  
Sbjct:   105 AGSLKTLKVPR-SGLTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFC 163

Query:   179 KIMGPFDLLF-------ASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISH 231
             + M P D+         A  +   +PKLK L +    ++ + ++ IL     LE L +  
Sbjct:   164 RNMHPLDVASVVSHDDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRG 223

Query:   232 C 232
             C
Sbjct:   224 C 224

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010608 "posttranscriptional regulation of gene expression" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IMP

TAIR|locus:2115949 AT4G05460 "AT4G05460" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 9.8e-08, P = 9.8e-08
 Identities = 61/241 (25%), Positives = 101/241 (41%)

Query:     1 MEESASTVRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSML 60
             ME   ST   W +L  ++   I       E+      VC SWR  C DP +W+ +D+  L
Sbjct:    11 MEVGEST--NWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNL 68

Query:    61 ISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTL-IFHFNLYVSDDQLTYTAE 119
                     L+   Y        L  + + ++  S+G +  + I++F      D L Y A 
Sbjct:    69 GD------LDDMDY-------NLEIMCRHAVDRSQGGLVDIGIWYFGTV---DLLNYIAH 112

Query:   120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELK 179
             R   L+ L +   ++I   G  +A+ +   LE L +   +     +  + Q C N + LK
Sbjct:   113 RSSNLRSLRLIRCSQITDDGFVEAV-VKLPLEELELSYCSFSVESLRVVGQCCLNMKTLK 171

Query:   180 I-MGPFDLLFASTLNMY--LPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236
             +   P        L +   +PKL+ L L    L+   L  ILD   NLE L++  C  ++
Sbjct:   172 LNKHPQKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVN 231

Query:   237 V 237
             +
Sbjct:   232 L 232

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

UNIPROTKB|Q58DG6 FBXL20 "F-box/LRR-repeat protein 20" [Bos taurus (taxid:9913)]

 Score = 113 (44.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 37/144 (25%), Positives = 61/144 (42%)

Query:    96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTM 155
             G ++ L       + D+ L Y    CP+L  L +    +I   G+    R    L+SL  
Sbjct:   195 GGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCA 254

Query:   156 PSIAN-PPYLMEEIAQNCRNFRELKIMGPFDLLFA--STLNMYLPKLKVLSLR-CTTLNR 211
                +N    ++  + QNC   R L++     L     +TL     +L+ + L  C  +  
Sbjct:   255 SGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITD 314

Query:   212 DALILILDGLQNLEVLNISHCLLI 235
               LI +      L+VL++SHC LI
Sbjct:   315 STLIQLSIHCPRLQVLSLSHCELI 338

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q96IG2 FBXL20 "F-box/LRR-repeat protein 20" [Homo sapiens (taxid:9606)]

 Score = 113 (44.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 37/144 (25%), Positives = 61/144 (42%)

Query:    96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTM 155
             G ++ L       + D+ L Y    CP+L  L +    +I   G+    R    L+SL  
Sbjct:   195 GGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCA 254

Query:   156 PSIAN-PPYLMEEIAQNCRNFRELKIMGPFDLLFA--STLNMYLPKLKVLSLR-CTTLNR 211
                +N    ++  + QNC   R L++     L     +TL     +L+ + L  C  +  
Sbjct:   255 SGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITD 314

Query:   212 DALILILDGLQNLEVLNISHCLLI 235
               LI +      L+VL++SHC LI
Sbjct:   315 STLIQLSIHCPRLQVLSLSHCELI 338

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1919444 Fbxl20 "F-box and leucine-rich repeat protein 20" [Mus musculus (taxid:10090)]

 Score = 113 (44.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 37/144 (25%), Positives = 61/144 (42%)

Query:    96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTM 155
             G ++ L       + D+ L Y    CP+L  L +    +I   G+    R    L+SL  
Sbjct:   195 GGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCA 254

Query:   156 PSIAN-PPYLMEEIAQNCRNFRELKIMGPFDLLFA--STLNMYLPKLKVLSLR-CTTLNR 211
                +N    ++  + QNC   R L++     L     +TL     +L+ + L  C  +  
Sbjct:   255 SGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITD 314

Query:   212 DALILILDGLQNLEVLNISHCLLI 235
               LI +      L+VL++SHC LI
Sbjct:   315 STLIQLSIHCPRLQVLSLSHCELI 338

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M2Z5	FBL53_ARATH	No assigned EC number	0.6842	0.9740	0.9708	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XII001171 hypothetical protein (291 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	308
pfam12937	47	pfam12937, F-box-like, F-box-like	9e-07

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 44.8 bits (107), Expect = 9e-07
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 11 WEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLS 58
            DL ++IL++IF   D  +L   +A VC  WR    D  LW+ L L 
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLR-LALVCRRWRELASDDSLWRRLCLR 47

This is an F-box-like family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	308
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.92
KOG4341	483	consensus F-box protein containing LRR [General fu	99.9
KOG4341	483	consensus F-box protein containing LRR [General fu	99.61
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	99.41
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.17
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.17
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.0
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.95
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.88
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.82
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.78
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.53
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.39
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.36
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.33
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.13
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.08
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.96
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.7
KOG2997	366	consensus F-box protein FBX9 [General function pre	97.69
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.64
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.64
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.63
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.56
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.16
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.15
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.14
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.08
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.07
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.01
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	97.01
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	96.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	96.69
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.6
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.47
PLN03150	623	hypothetical protein; Provisional	96.45
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.39
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.3
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.29
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.22
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.08
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	95.98
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.84
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	95.83
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.54
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.22
PLN03150	623	hypothetical protein; Provisional	95.13
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.07
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	95.07
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.06
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.79
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.56
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	93.26
PF13013	109	F-box-like_2: F-box-like domain	93.26
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	93.22
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	93.08
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	92.83
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	92.21
KOG4308	478	consensus LRR-containing protein [Function unknown	90.85
KOG4237	498	consensus Extracellular matrix protein slit, conta	90.67
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	90.53
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	89.32
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	89.25
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	89.21
KOG4308	478	consensus LRR-containing protein [Function unknown	88.42
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	88.38
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	88.37
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	88.25
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	88.24
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	87.57
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	87.44
KOG0472	565	consensus Leucine-rich repeat protein [Function un	87.43
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	85.88
PF09372	97	PRANC: PRANC domain; InterPro: IPR018272 This pres	84.62
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	82.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	82.28
KOG3926	332	consensus F-box proteins [Amino acid transport and	81.89
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	81.46

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.2e-24  Score=181.96  Aligned_cols=226  Identities=20%  Similarity=0.245  Sum_probs=168.7

Q ss_pred             cCCCcCCCCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCcceeeeccccccc-----------cc--ccC----C
Q 021717            7 TVRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISN-----------YI--KIP----L   69 (308)
Q Consensus         7 ~~~~~~~LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~l~~~~~~-----------~~--~~~----~   69 (308)
                      ++.+|+.|||||+..||+.|..++++. ++.|||||++++.+.++|.++|+....-+           ..  ..+    .
T Consensus        94 pgv~~~slpDEill~IFs~L~kk~LL~-~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~  172 (419)
T KOG2120|consen   94 PGVSWDSLPDEILLGIFSCLCKKELLK-VSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMD  172 (419)
T ss_pred             CCCCcccCCHHHHHHHHHhccHHHHHH-HHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhc
Confidence            345699999999999999999999999 99999999999999999999998763100           00  000    0


Q ss_pred             CC-ceeecCCChHHHH----------HHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHH
Q 021717           70 EP-YVYVHGHSDKQLT----------RILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKT  138 (308)
Q Consensus        70 ~~-~~~~~~~~~~~l~----------~~l~~~~~~s~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~  138 (308)
                      ++ .+.+......++.          .-....+-..|..++.+.+.+ ..++|.....++++ .+|+.|+|++|..++..
T Consensus       173 ~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n  250 (419)
T KOG2120|consen  173 QPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAKN-SNLVRLNLSMCSGFTEN  250 (419)
T ss_pred             CchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhcc-ccceeeccccccccchh
Confidence            00 0000000000000          000011222466777787765 36788888888875 89999999999999999


Q ss_pred             HHHHHHhcCCCCCEEEeCCCCCChHHHH-HHHHcCCCCCeeEecCC---CCHHHHHHHHhcCCCCcEEEee-CCCCCHHH
Q 021717          139 GICKAIRMWRDLESLTMPSIANPPYLME-EIAQNCRNFRELKIMGP---FDLLFASTLNMYLPKLKVLSLR-CTTLNRDA  213 (308)
Q Consensus       139 ~l~~~~~~~~~L~~L~l~~~~~~~~~l~-~l~~~~~~L~~L~l~~~---~~~~~~~~l~~~~p~L~~L~L~-~~~it~~~  213 (308)
                      ++..++..|..|.+|++++|..+.+.+. +++.-.++|+.|+++|+   +.+..+..+.+.||+|.+|+|+ ++.+++ +
T Consensus       251 ~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~  329 (419)
T KOG2120|consen  251 ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-D  329 (419)
T ss_pred             HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-h
Confidence            9999999999999999999976544444 34445689999999987   6677888888999999999999 777888 5


Q ss_pred             HHHHHHcCCCCCEEecccCCCcC
Q 021717          214 LILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       214 l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      +...+.+++.|++|.++.|..+.
T Consensus       330 ~~~~~~kf~~L~~lSlsRCY~i~  352 (419)
T KOG2120|consen  330 CFQEFFKFNYLQHLSLSRCYDII  352 (419)
T ss_pred             HHHHHHhcchheeeehhhhcCCC
Confidence            55556679999999999999876

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.90  E-value=4.6e-24  Score=185.65  Aligned_cols=205  Identities=24%  Similarity=0.393  Sum_probs=144.7

Q ss_pred             CCCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCcceeeecccccccccccCCCCceeecCCChHHHHHHHHHHHH
Q 021717           13 DLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISNYIKIPLEPYVYVHGHSDKQLTRILKISLS   92 (308)
Q Consensus        13 ~LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~   92 (308)
                      .||+|++.+||++|+.+.+.+ +++||+.|...+.|...|.++|+.....     ....             .++.....
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r-~a~~c~~~n~~AlD~~~~q~idL~t~~r-----Dv~g-------------~VV~~~~~  134 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCR-AAQCCTMWNKLALDGSCWQHIDLFTFQR-----DVDG-------------GVVENMIS  134 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHH-HHHHHHHhhhhhhccccceeeehhcchh-----cCCC-------------cceehHhh
Confidence            599999999999999999999 9999999999999999999999987521     1111             11222345


Q ss_pred             hcCCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCC-CCChHHHHHHHHc
Q 021717           93 LSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQN  171 (308)
Q Consensus        93 ~s~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~l~~l~~~  171 (308)
                      +.++.++.+.+.++..+.++.+..++.+||+++.|++.+|..+|+..+..+...|++|++|++..| .+++..++.++..
T Consensus       135 Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g  214 (483)
T KOG4341|consen  135 RCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG  214 (483)
T ss_pred             hhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence            556777777777777777777777777777777777777777777777777777777777777776 5677777777777


Q ss_pred             CCCCCeeEecCC--CCHHHHHHHHh--------------------------cCCCCcEEEee-CCCCCHHHHHHHHHcCC
Q 021717          172 CRNFRELKIMGP--FDLLFASTLNM--------------------------YLPKLKVLSLR-CTTLNRDALILILDGLQ  222 (308)
Q Consensus       172 ~~~L~~L~l~~~--~~~~~~~~l~~--------------------------~~p~L~~L~L~-~~~it~~~l~~l~~~~p  222 (308)
                      ||+|++|+++.|  +.+.++..+..                          +++.+..+++. |+.+||+++..+...|.
T Consensus       215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~  294 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH  294 (483)
T ss_pred             hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence            777777777654  33333444444                          44555555544 55555555555555555


Q ss_pred             CCCEEecccCCCcC
Q 021717          223 NLEVLNISHCLLID  236 (308)
Q Consensus       223 ~L~~L~l~~C~~i~  236 (308)
                      .|+.|+.++|..++
T Consensus       295 ~lq~l~~s~~t~~~  308 (483)
T KOG4341|consen  295 ALQVLCYSSCTDIT  308 (483)
T ss_pred             HhhhhcccCCCCCc
Confidence            56666665555555

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.61  E-value=1.3e-16  Score=139.40  Aligned_cols=205  Identities=20%  Similarity=0.239  Sum_probs=156.9

Q ss_pred             CCChHHHhhHHhHhhHHHHHhccCC-Ccceeeecccc---cccccccCCCCceeecCCChHHHHHHHHHHHHhcCCCccE
Q 021717           25 SFDIFELTSGIAHVCSSWRSACCDP-LLWKTLDLSML---ISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRT  100 (308)
Q Consensus        25 ~L~~~d~~~~~s~VCr~Wr~~~~~p-~lw~~i~l~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~s~~~l~~  100 (308)
                      ++....... ++.+|+.|+.+...+ ..|.++.+...   ..++...+.+   |    ....-.+-++ .+.+.+..++.
T Consensus       176 ~iTd~s~~s-la~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlS---w----c~qi~~~gv~-~~~rG~~~l~~  246 (483)
T KOG4341|consen  176 KITDSSLLS-LARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLS---W----CPQISGNGVQ-ALQRGCKELEK  246 (483)
T ss_pred             eccHHHHHH-HHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhc---c----CchhhcCcch-HHhccchhhhh
Confidence            566677777 999999999999986 77777766532   1111111100   0    0000001111 23334444666


Q ss_pred             EEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCC-CCChHHHHHHHHcCCCCCeeE
Q 021717          101 LIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQNCRNFRELK  179 (308)
Q Consensus       101 l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~l~~l~~~~~~L~~L~  179 (308)
                      +...+|....++.+..++.+|+-+.++++..|..+||.++..+...|..|+.|+.+++ .+++..+.+++++|++|+.|.
T Consensus       247 ~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~  326 (483)
T KOG4341|consen  247 LSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLE  326 (483)
T ss_pred             hhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEe
Confidence            6666788888899999999999999999999999999999999999999999999988 788899999999999999999


Q ss_pred             ecCC--CCHHHHHHHHhcCCCCcEEEee-CCCCCHHHHHHHHHcCCCCCEEecccCCCcCCC
Q 021717          180 IMGP--FDLLFASTLNMYLPKLKVLSLR-CTTLNRDALILILDGLQNLEVLNISHCLLIDVP  238 (308)
Q Consensus       180 l~~~--~~~~~~~~l~~~~p~L~~L~L~-~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~~  238 (308)
                      +.+|  +++.++..+..++|.|+.|++. +..+++..+..+..+||.|+.|.+++|..+|+.
T Consensus       327 l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~  388 (483)
T KOG4341|consen  327 LSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE  388 (483)
T ss_pred             ccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh
Confidence            9887  8888888899999999999998 556777788888888999999999999998876

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=99.41  E-value=1e-13  Score=86.82  Aligned_cols=46  Identities=35%  Similarity=0.680  Sum_probs=40.7

Q ss_pred             cCCCCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCcceeeec
Q 021717           11 WEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDL   57 (308)
Q Consensus        11 ~~~LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~l   57 (308)
                      |..||+||+.+||+||+..|+.+ +++|||+|++++.++.+|+++.+
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~-~~~vcr~w~~~~~~~~lW~~~~~   46 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLR-LSLVCRRWRRIANDNSLWRRLCL   46 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHH-HTTSSHHHHHHHTCCCHHHHHC-
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHCChhhhhhhcc
Confidence            67899999999999999999999 99999999999998899998765

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.17  E-value=1.2e-10  Score=109.27  Aligned_cols=135  Identities=21%  Similarity=0.290  Sum_probs=68.1

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCC-CCCCCHH--HHHHHHhcCCCCCEEEeCCCC-CChHHHHHHHH
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPA-WNRIKKT--GICKAIRMWRDLESLTMPSIA-NPPYLMEEIAQ  170 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~-~~~~~~~--~l~~~~~~~~~L~~L~l~~~~-~~~~~l~~l~~  170 (308)
                      .+.++.+.+..+..+++..+..++..+++|+.|++.+ +..++..  ........|++|++|+++++. +++..+..++.
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            4444555555555555555555555555555555554 2222211  123344455555555555553 55555555555


Q ss_pred             cCCCCCeeEecCC--CCHHHHHHHHhcCCCCcEEEee-CCCCCHHHHHHHHHcCCCCCEEec
Q 021717          171 NCRNFRELKIMGP--FDLLFASTLNMYLPKLKVLSLR-CTTLNRDALILILDGLQNLEVLNI  229 (308)
Q Consensus       171 ~~~~L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~-~~~it~~~l~~l~~~~p~L~~L~l  229 (308)
                      .||+|+.|.+..|  +++.++.+++..||+|++|+++ |..+++.++..+...||+|+.|.+
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence            5555555554444  3555555555555555555555 344555555555555555444443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.17  E-value=1.2e-10  Score=109.14  Aligned_cols=149  Identities=25%  Similarity=0.394  Sum_probs=121.5

Q ss_pred             CCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCC--C--CChHHHHHHHHcCCCCCeeEecCC
Q 021717          108 YVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI--A--NPPYLMEEIAQNCRNFRELKIMGP  183 (308)
Q Consensus       108 ~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~--~~~~~l~~l~~~~~~L~~L~l~~~  183 (308)
                      ...+..+..+...+++|+.|.+..|..+++.++..+...+++|++|+++++  .  ........+...|++|+.|++..+
T Consensus       174 ~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~  253 (482)
T KOG1947|consen  174 LLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGC  253 (482)
T ss_pred             cccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhh
Confidence            345666777777899999999999999999999999999999999999873  2  223344557788999999999876


Q ss_pred             --CCHHHHHHHHhcCCCCcEEEee-CCCCCHHHHHHHHHcCCCCCEEecccCCCcCCCCCCChhHHhhhhhHHHHHHHHh
Q 021717          184 --FDLLFASTLNMYLPKLKVLSLR-CTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAAR  260 (308)
Q Consensus       184 --~~~~~~~~l~~~~p~L~~L~L~-~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~~~~~~~~~~~~~~~~~i~~~~~~  260 (308)
                        ++|.++..++..||+|+.|.+. |..+|+.++..+...||+|++|++++|..+++          ..+.. +...+.+
T Consensus       254 ~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d----------~~l~~-~~~~c~~  322 (482)
T KOG1947|consen  254 GLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD----------SGLEA-LLKNCPN  322 (482)
T ss_pred             hccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH----------HHHHH-HHHhCcc
Confidence              7999999999899999999987 55599999999999999999999999999974          22322 3555656


Q ss_pred             hhhhhcc
Q 021717          261 LRKFLTC  267 (308)
Q Consensus       261 l~~~~~c  267 (308)
                      ++++...
T Consensus       323 l~~l~~~  329 (482)
T KOG1947|consen  323 LRELKLL  329 (482)
T ss_pred             hhhhhhh
Confidence            6665444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=5.9e-10  Score=94.38  Aligned_cols=140  Identities=14%  Similarity=0.197  Sum_probs=114.8

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCC--CCChHHHHHHHHcC
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI--ANPPYLMEEIAQNC  172 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~l~~l~~~~  172 (308)
                      ...++.++++++..++...+..+.+.|..|.+|+|+.|...++.--..+..--++|+.|+++++  .+...-+..+++.|
T Consensus       233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc  312 (419)
T KOG2120|consen  233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC  312 (419)
T ss_pred             cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC
Confidence            4578899999999999999999999999999999999966666533333344579999999998  45667888899999


Q ss_pred             CCCCeeEecCC--CCHHHHHHHHhcCCCCcEEEee-CCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          173 RNFRELKIMGP--FDLLFASTLNMYLPKLKVLSLR-CTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       173 ~~L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~-~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      |+|.+|+++.+  +.++.+ .....++.|++|+++ |..+..+.+..+ ...|.|.+|++.||..-|
T Consensus       313 p~l~~LDLSD~v~l~~~~~-~~~~kf~~L~~lSlsRCY~i~p~~~~~l-~s~psl~yLdv~g~vsdt  377 (419)
T KOG2120|consen  313 PNLVHLDLSDSVMLKNDCF-QEFFKFNYLQHLSLSRCYDIIPETLLEL-NSKPSLVYLDVFGCVSDT  377 (419)
T ss_pred             CceeeeccccccccCchHH-HHHHhcchheeeehhhhcCCChHHeeee-ccCcceEEEEeccccCch
Confidence            99999999988  666444 444599999999999 777877776654 568999999999997554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.95  E-value=3.7e-08  Score=87.45  Aligned_cols=138  Identities=24%  Similarity=0.249  Sum_probs=93.9

Q ss_pred             CCccEEEccCCCCCCHHHHHHHH---hhC-CCCcEEEcCCCCCCCHH---HHHHHHhcCCCCCEEEeCCCCCChHHHHHH
Q 021717           96 GSIRTLIFHFNLYVSDDQLTYTA---ERC-PQLKRLVMPAWNRIKKT---GICKAIRMWRDLESLTMPSIANPPYLMEEI  168 (308)
Q Consensus        96 ~~l~~l~l~~~~~~~d~~l~~l~---~~~-~~L~~L~L~~~~~~~~~---~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l  168 (308)
                      ..++.+.+..+. +++..+..+.   ..+ ++|+.|++.++. ++..   .+...+..+++|++|+++++.+++..+..+
T Consensus       108 ~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  185 (319)
T cd00116         108 SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGIGDAGIRAL  185 (319)
T ss_pred             CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHH
Confidence            668888887654 4444444332   234 788888888874 4422   344455667788888888887776665555


Q ss_pred             HH---cCCCCCeeEecCC-CCHHHHHHH---HhcCCCCcEEEeeCCCCCHHHHHHHHHcC----CCCCEEecccCCCc
Q 021717          169 AQ---NCRNFRELKIMGP-FDLLFASTL---NMYLPKLKVLSLRCTTLNRDALILILDGL----QNLEVLNISHCLLI  235 (308)
Q Consensus       169 ~~---~~~~L~~L~l~~~-~~~~~~~~l---~~~~p~L~~L~L~~~~it~~~l~~l~~~~----p~L~~L~l~~C~~i  235 (308)
                      ..   .+++|+.|+++++ +++.....+   ...+|+|++|+++++.+++.++..+...+    +.|++|++++|...
T Consensus       186 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         186 AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence            43   3358888888876 555544333   34677888888888888887777777664    68888888888533

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.88  E-value=4.9e-08  Score=86.62  Aligned_cols=137  Identities=19%  Similarity=0.166  Sum_probs=81.5

Q ss_pred             CCCccEEEccCCCCC--CHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHH---HHhcC-CCCCEEEeCCCCCChHHHHHH
Q 021717           95 RGSIRTLIFHFNLYV--SDDQLTYTAERCPQLKRLVMPAWNRIKKTGICK---AIRMW-RDLESLTMPSIANPPYLMEEI  168 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~--~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~---~~~~~-~~L~~L~l~~~~~~~~~l~~l  168 (308)
                      ...++.+.+..+...  ....+..+... ++|++|+++++ .+++.+...   .+..+ ++|++|++++|.++......+
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            556777777665443  22233333434 56888888776 344433332   33455 777888888776664333322


Q ss_pred             ---HHcCCCCCeeEecCC-CCHHHHHHHH---hcCCCCcEEEeeCCCCCHHHHHHH---HHcCCCCCEEecccCC
Q 021717          169 ---AQNCRNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTTLNRDALILI---LDGLQNLEVLNISHCL  233 (308)
Q Consensus       169 ---~~~~~~L~~L~l~~~-~~~~~~~~l~---~~~p~L~~L~L~~~~it~~~l~~l---~~~~p~L~~L~l~~C~  233 (308)
                         ...+++|+.|++.++ +++.+...+.   ..+++|++|+++++.+++.+...+   +..+|+|++|++++|.
T Consensus       158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence               234567888888766 5655444443   244578888888777776665433   3456778888887764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.82  E-value=4.5e-09  Score=63.45  Aligned_cols=40  Identities=25%  Similarity=0.437  Sum_probs=37.4

Q ss_pred             CCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCccee
Q 021717           14 LDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKT   54 (308)
Q Consensus        14 LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw~~   54 (308)
                      ||+|++.+||.+++..|+.. ++.|||+|+.++.++.+|..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~-~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLR-LRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhcChhhhhc
Confidence            79999999999999999999 99999999999988888864

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.78  E-value=9.5e-10  Score=69.01  Aligned_cols=43  Identities=35%  Similarity=0.612  Sum_probs=36.2

Q ss_pred             CcCCCCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCcce
Q 021717           10 RWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWK   53 (308)
Q Consensus        10 ~~~~LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw~   53 (308)
                      .|.+||+|++.+||++|+..|++. ++.|||+|++++.++.+|.
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~-l~~vsk~~~~~~~~~~~~~   44 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLR-LSLVSKRWRSLVDSPRLWK   44 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHH-HCTT-HHHHHHHTTHHHHH
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHH-HHHHhhHHHHHHcCCCccH
Confidence            477899999999999999999999 9999999999998766664

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.53  E-value=2.5e-07  Score=89.68  Aligned_cols=142  Identities=22%  Similarity=0.216  Sum_probs=99.7

Q ss_pred             HHHHHHH-HhcCCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChH
Q 021717           85 RILKISL-SLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPY  163 (308)
Q Consensus        85 ~~l~~~~-~~s~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~  163 (308)
                      .+++.++ +.+..+++++.+.+...+.......++...|+|++|.+.+-... .+.+..+...+|+|..||++++.+++-
T Consensus       110 ~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~-~~dF~~lc~sFpNL~sLDIS~TnI~nl  188 (699)
T KOG3665|consen  110 SLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD-NDDFSQLCASFPNLRSLDISGTNISNL  188 (699)
T ss_pred             HHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec-chhHHHHhhccCccceeecCCCCccCc
Confidence            3444433 34677899999998888888888999999999999999987444 444889999999999999999977643


Q ss_pred             HHHHHHHcCCCCCeeEecCC-CCH-HHHHHHHhcCCCCcEEEeeCCCCCHH--HHHHHHHc---CCCCCEEeccc
Q 021717          164 LMEEIAQNCRNFRELKIMGP-FDL-LFASTLNMYLPKLKVLSLRCTTLNRD--ALILILDG---LQNLEVLNISH  231 (308)
Q Consensus       164 ~l~~l~~~~~~L~~L~l~~~-~~~-~~~~~l~~~~p~L~~L~L~~~~it~~--~l~~l~~~---~p~L~~L~l~~  231 (308)
                        ..++ +.++|+.|.+.+- +.. ..+..+. ++.+|+.||++...-.+.  -+...++.   +|+|+.||.++
T Consensus       189 --~GIS-~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  189 --SGIS-RLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             --HHHh-ccccHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence              3333 4677888877654 332 4455555 788888888884332222  23333332   67888887773

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=1.3e-07  Score=84.17  Aligned_cols=119  Identities=18%  Similarity=0.157  Sum_probs=75.5

Q ss_pred             HHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHh
Q 021717          116 YTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNM  194 (308)
Q Consensus       116 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~  194 (308)
                      ..++.||+++.|+|+..-......+..++..+|+|+.|+++.+.+....-.......++|+.|.+++| ++...+..++.
T Consensus       140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~  219 (505)
T KOG3207|consen  140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILL  219 (505)
T ss_pred             hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHH
Confidence            56667888888888876555667777888888888888888773321111111114567888888877 77777777877


Q ss_pred             cCCCCcEEEeeCCC-CCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          195 YLPKLKVLSLRCTT-LNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       195 ~~p~L~~L~L~~~~-it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      .+|+|+.|.|.+|. +...+...  +....|++|+|++...++
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~  260 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLID  260 (505)
T ss_pred             hCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCcccc
Confidence            88888888887652 22211111  113346666666555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.36  E-value=1.6e-06  Score=75.33  Aligned_cols=139  Identities=22%  Similarity=0.243  Sum_probs=80.2

Q ss_pred             CCCccEEEccCCCCCCH--HHHHHHHhhCCCCcEEEcCCCCCCCHHH---HHHHHhcCCCCCEEEeCCCCCChHHHHHHH
Q 021717           95 RGSIRTLIFHFNLYVSD--DQLTYTAERCPQLKRLVMPAWNRIKKTG---ICKAIRMWRDLESLTMPSIANPPYLMEEIA  169 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d--~~l~~l~~~~~~L~~L~L~~~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~  169 (308)
                      ...++.+.+..++.-+.  ..+....+.+|.|+.+.++.. .+...+   +...+..||+|+.|++..|.++...-.+++
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La  234 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA  234 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence            34455555544433222  223444455677777777754 332222   344456777777777777766554444444


Q ss_pred             H---cCCCCCeeEecCC-CCHHHHHHH----HhcCCCCcEEEeeCCCCCHHHHHHHHHc---CCCCCEEecccCCC
Q 021717          170 Q---NCRNFRELKIMGP-FDLLFASTL----NMYLPKLKVLSLRCTTLNRDALILILDG---LQNLEVLNISHCLL  234 (308)
Q Consensus       170 ~---~~~~L~~L~l~~~-~~~~~~~~l----~~~~p~L~~L~L~~~~it~~~l~~l~~~---~p~L~~L~l~~C~~  234 (308)
                      .   ..|+|+.|+++.| +.+.++.++    -...|+|+.|.+.++.|+.++...+...   -|.|+.|+|++|..
T Consensus       235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            3   3456777777776 444444333    3456777777777777776665544332   47777777777765

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.33  E-value=5.9e-06  Score=71.84  Aligned_cols=142  Identities=18%  Similarity=0.188  Sum_probs=76.2

Q ss_pred             CCccEEEccCCCCC--CHHHHHHHHhhCCCCcEEEcCCCCCCCHHH------------HHHHHhcCCCCCEEEeCCCCCC
Q 021717           96 GSIRTLIFHFNLYV--SDDQLTYTAERCPQLKRLVMPAWNRIKKTG------------ICKAIRMWRDLESLTMPSIANP  161 (308)
Q Consensus        96 ~~l~~l~l~~~~~~--~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~------------l~~~~~~~~~L~~L~l~~~~~~  161 (308)
                      +.++.+.++.+.+-  ....+..+.+.|..|++|-|.+|. +...+            ....+..-++|+.+..+.|...
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence            38888888765432  234466666678888888888773 33222            1112224456666666666433


Q ss_pred             h---HHHHHHHHcCCCCCeeEecCC-CCHHHHHHH---HhcCCCCcEEEeeCCCCCHHHHHHHH---HcCCCCCEEeccc
Q 021717          162 P---YLMEEIAQNCRNFRELKIMGP-FDLLFASTL---NMYLPKLKVLSLRCTTLNRDALILIL---DGLQNLEVLNISH  231 (308)
Q Consensus       162 ~---~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l---~~~~p~L~~L~L~~~~it~~~l~~l~---~~~p~L~~L~l~~  231 (308)
                      +   ..+....+.+|.|+.+++..+ +...+...+   +.+||.|+.|+|..|.++..+=..+.   ...|+|+.|++++
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d  250 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD  250 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence            2   223333345566666666544 332222111   34566666666666666554433332   3345666666666


Q ss_pred             CCCcCCC
Q 021717          232 CLLIDVP  238 (308)
Q Consensus       232 C~~i~~~  238 (308)
                      |-.-+.+
T Consensus       251 cll~~~G  257 (382)
T KOG1909|consen  251 CLLENEG  257 (382)
T ss_pred             ccccccc
Confidence            6554443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=2.7e-06  Score=75.99  Aligned_cols=114  Identities=19%  Similarity=0.273  Sum_probs=91.3

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCC-ChHHHHHHHHcCCCCCeeEecCC----CCHHHHHHHHh
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIAN-PPYLMEEIAQNCRNFRELKIMGP----FDLLFASTLNM  194 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~-~~~~l~~l~~~~~~L~~L~l~~~----~~~~~~~~l~~  194 (308)
                      ...+|+...|..+ .+...+.......||+++.|+|+.+-+ .-..+..|+...|+|+.|+++.+    +.+...   ..
T Consensus       119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~---~~  194 (505)
T KOG3207|consen  119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT---TL  194 (505)
T ss_pred             hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc---hh
Confidence            3456888888877 666666557888999999999999943 45778888889999999999875    222211   12


Q ss_pred             cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcCC
Q 021717          195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV  237 (308)
Q Consensus       195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~  237 (308)
                      .++.|+.|.|+.+.++...+..++..||+|+.|.+.+...+..
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~  237 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI  237 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce
Confidence            6899999999999999999999999999999999998865543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.12  E-value=4.4e-07  Score=72.97  Aligned_cols=107  Identities=21%  Similarity=0.221  Sum_probs=41.2

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCH-HHHHHHHhcCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDL-LFASTLNMYLP  197 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~-~~~~~l~~~~p  197 (308)
                      ...+|+.|+|+.+.-.+-++    +..++.|++|+++++.++.-. ..+...+|+|++|.+.++ +.+ ..+.. ...+|
T Consensus        40 ~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~-L~~l~  113 (175)
T PF14580_consen   40 TLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEP-LSSLP  113 (175)
T ss_dssp             T-TT--EEE-TTS--S--TT--------TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGG-GGG-T
T ss_pred             hhcCCCEEECCCCCCccccC----ccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHH-HHcCC
Confidence            45677777777663222222    345677777777777654311 223345777777777765 222 11222 23677


Q ss_pred             CCcEEEeeCCCCCHHHH--HHHHHcCCCCCEEecccC
Q 021717          198 KLKVLSLRCTTLNRDAL--ILILDGLQNLEVLNISHC  232 (308)
Q Consensus       198 ~L~~L~L~~~~it~~~l--~~l~~~~p~L~~L~l~~C  232 (308)
                      +|+.|+|.+|.+++..-  ..++..+|+|+.||-...
T Consensus       114 ~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen  114 KLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             T--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             CcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            77777777766653321  234456777777776543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.08  E-value=9.2e-07  Score=71.17  Aligned_cols=130  Identities=18%  Similarity=0.188  Sum_probs=52.1

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCC
Q 021717          121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL  199 (308)
Q Consensus       121 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L  199 (308)
                      +-++++|+|.+. .++.  +..+-..+.+|+.|++++|.+..  +..+. .+++|+.|.++++ ++.-. ..+...+|+|
T Consensus        18 ~~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~--l~~l~-~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L   90 (175)
T PF14580_consen   18 PVKLRELNLRGN-QIST--IENLGATLDKLEVLDLSNNQITK--LEGLP-GLPRLKTLDLSNNRISSIS-EGLDKNLPNL   90 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S-C-HHHHHH-TT-
T ss_pred             cccccccccccc-cccc--ccchhhhhcCCCEEECCCCCCcc--ccCcc-ChhhhhhcccCCCCCCccc-cchHHhCCcC
Confidence            457899999977 3322  33444467899999999997652  33333 3789999999987 43321 1233469999


Q ss_pred             cEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcCCCCCCChhHHhhhhhHHHHHHHHhhhhhhcc
Q 021717          200 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAARLRKFLTC  267 (308)
Q Consensus       200 ~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~c  267 (308)
                      ++|.++.|.|.+-.-..-++.+|+|+.|++.+.+-...          ..+...+......|+.+...
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~----------~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK----------KNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS----------TTHHHHHHHH-TT-SEETTE
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch----------hhHHHHHHHHcChhheeCCE
Confidence            99999998886533233456799999999998875543          23445577777777766544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.96  E-value=1.5e-05  Score=77.51  Aligned_cols=111  Identities=25%  Similarity=0.240  Sum_probs=84.9

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCc
Q 021717          122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK  200 (308)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~  200 (308)
                      .+|+.|++++...+...........+|.|++|.+.+-.+..+-+..+..+.|+|..|++++. +++-   .....+++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence            57999999987777666667777889999999998886665668888888899999999876 5442   2334788999


Q ss_pred             EEEeeCCCCCH-HHHHHHHHcCCCCCEEecccCCCcC
Q 021717          201 VLSLRCTTLNR-DALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       201 ~L~L~~~~it~-~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      .|.+.+-.+.. ..+..++ .+.+|+.|||+.-...+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~  234 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNND  234 (699)
T ss_pred             HHhccCCCCCchhhHHHHh-cccCCCeeecccccccc
Confidence            99888777665 4455554 68999999999765554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.70  E-value=4.4e-05  Score=61.72  Aligned_cols=85  Identities=21%  Similarity=0.311  Sum_probs=58.8

Q ss_pred             CCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC--CCHHHHHHHHhcCCCCcEEEee-CCCCCHHHHHHHHHcCCCCCE
Q 021717          150 LESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP--FDLLFASTLNMYLPKLKVLSLR-CTTLNRDALILILDGLQNLEV  226 (308)
Q Consensus       150 L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~-~~~it~~~l~~l~~~~p~L~~  226 (308)
                      ++.++-+++.+..+.+..+. .++.|+.|.+..|  ++|..+..+..-.|+|+.|+|+ |.+||+.|+.-+. .+++|+.
T Consensus       103 IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~  180 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRR  180 (221)
T ss_pred             EEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHH
Confidence            45566666666667776665 3677777777766  6777777776667788888887 6678888876553 5777777


Q ss_pred             EecccCCCcC
Q 021717          227 LNISHCLLID  236 (308)
Q Consensus       227 L~l~~C~~i~  236 (308)
                      |.|.+-..+.
T Consensus       181 L~l~~l~~v~  190 (221)
T KOG3864|consen  181 LHLYDLPYVA  190 (221)
T ss_pred             HHhcCchhhh
Confidence            7777655444

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=97.69  E-value=1.8e-05  Score=67.85  Aligned_cols=50  Identities=26%  Similarity=0.549  Sum_probs=44.1

Q ss_pred             CcCCCCHHHHHHHhcC-----CChHHHhhHHhHhhHHHHHhccCCCcceeeecccc
Q 021717           10 RWEDLDNDILVKIFQS-----FDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSML   60 (308)
Q Consensus        10 ~~~~LP~eiL~~If~~-----L~~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~l~~~   60 (308)
                      .|..||+|||..||..     ++.+++.. ++.|||.|+..+++|.+|+..-+..|
T Consensus       106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~-~s~vCr~F~~~~R~~~lwR~aC~KvW  160 (366)
T KOG2997|consen  106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQ-LSLVCRGFYKCARDPELWRLACLKVW  160 (366)
T ss_pred             hhhhCCHHHHHHHHHHHHhhhcchhhHHH-hHhhHHHHHHHHcChHHHHHHHHHHH
Confidence            3678999999999974     78899999 99999999999999999997766555

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.64  E-value=2.8e-05  Score=75.55  Aligned_cols=114  Identities=24%  Similarity=0.277  Sum_probs=79.7

Q ss_pred             CCCHHHHHHHHhhCCCCcEEEcCCCC--CCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC--
Q 021717          108 YVSDDQLTYTAERCPQLKRLVMPAWN--RIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP--  183 (308)
Q Consensus       108 ~~~d~~l~~l~~~~~~L~~L~L~~~~--~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~--  183 (308)
                      .++|+.+..+. ..++||.|+|++..  .+.+    ....+++.|++|.|+++.+..-. ..++ .|+.|++|...++  
T Consensus       370 ~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpa----s~~~kle~LeeL~LSGNkL~~Lp-~tva-~~~~L~tL~ahsN~l  442 (1081)
T KOG0618|consen  370 HLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPA----SKLRKLEELEELNLSGNKLTTLP-DTVA-NLGRLHTLRAHSNQL  442 (1081)
T ss_pred             cccccchhhhc-cccceeeeeecccccccCCH----HHHhchHHhHHHhcccchhhhhh-HHHH-hhhhhHHHhhcCCce
Confidence            34555554443 46899999999762  2333    34567889999999999665222 3333 4888999988765  


Q ss_pred             -CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCC
Q 021717          184 -FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  234 (308)
Q Consensus       184 -~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~  234 (308)
                       ..+    .+. .+|.|+.+++++|+++...+...... |+|++||++|..+
T Consensus       443 ~~fP----e~~-~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  443 LSFP----ELA-QLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR  488 (1081)
T ss_pred             eech----hhh-hcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence             122    232 78999999999999987776654433 8999999998775

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.64  E-value=1.2e-05  Score=74.46  Aligned_cols=110  Identities=19%  Similarity=0.235  Sum_probs=67.5

Q ss_pred             hCCCCcEEEcCCCC--CCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-----CCHHHHHHH
Q 021717          120 RCPQLKRLVMPAWN--RIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-----FDLLFASTL  192 (308)
Q Consensus       120 ~~~~L~~L~L~~~~--~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-----~~~~~~~~l  192 (308)
                      .|++|+.|+|+...  .+.+..    +..+..|++|.|+.+.++.-.-.+ .....+|+.|+|..+     +.|  ....
T Consensus       315 ftqkL~~LdLs~N~i~~l~~~s----f~~L~~Le~LnLs~Nsi~~l~e~a-f~~lssL~~LdLr~N~ls~~IED--aa~~  387 (873)
T KOG4194|consen  315 FTQKLKELDLSSNRITRLDEGS----FRVLSQLEELNLSHNSIDHLAEGA-FVGLSSLHKLDLRSNELSWCIED--AAVA  387 (873)
T ss_pred             hcccceeEeccccccccCChhH----HHHHHHhhhhcccccchHHHHhhH-HHHhhhhhhhcCcCCeEEEEEec--chhh
Confidence            35666666666541  122222    233456666666666443211111 224568888888764     344  3344


Q ss_pred             HhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcCC
Q 021717          193 NMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV  237 (308)
Q Consensus       193 ~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~  237 (308)
                      ..++|.|++|.|.+|++....= ..+.++++||+||+.+....+.
T Consensus       388 f~gl~~LrkL~l~gNqlk~I~k-rAfsgl~~LE~LdL~~NaiaSI  431 (873)
T KOG4194|consen  388 FNGLPSLRKLRLTGNQLKSIPK-RAFSGLEALEHLDLGDNAIASI  431 (873)
T ss_pred             hccchhhhheeecCceeeecch-hhhccCcccceecCCCCcceee
Confidence            5689999999999998754332 3456899999999998765554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.63  E-value=7.2e-05  Score=76.60  Aligned_cols=88  Identities=16%  Similarity=0.139  Sum_probs=48.7

Q ss_pred             HhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCC
Q 021717          144 IRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQ  222 (308)
Q Consensus       144 ~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p  222 (308)
                      +..+++|+.|+++++.+.......+. .+++|++|+++++ +....... ...+++|+.|+|+++.++... ...+..++
T Consensus       160 ~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~  236 (968)
T PLN00113        160 IGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSGEI-PYEIGGLT  236 (968)
T ss_pred             HhcCCCCCEEECccCcccccCChhhh-hCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCCcC-ChhHhcCC
Confidence            44566666666666644332222333 3566666666654 22211112 236677777777766655322 22345678


Q ss_pred             CCCEEecccCCC
Q 021717          223 NLEVLNISHCLL  234 (308)
Q Consensus       223 ~L~~L~l~~C~~  234 (308)
                      +|++|++++|..
T Consensus       237 ~L~~L~L~~n~l  248 (968)
T PLN00113        237 SLNHLDLVYNNL  248 (968)
T ss_pred             CCCEEECcCcee
Confidence            888888887753

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.56  E-value=9.1e-05  Score=75.86  Aligned_cols=61  Identities=16%  Similarity=0.086  Sum_probs=32.0

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP  183 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~  183 (308)
                      .+++|+.|+|+++....  .+...+..+++|+.|++++|.+.......+. .+++|+.|.++++
T Consensus       162 ~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n  222 (968)
T PLN00113        162 SFSSLKVLDLGGNVLVG--KIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYN  222 (968)
T ss_pred             cCCCCCEEECccCcccc--cCChhhhhCcCCCeeeccCCCCcCcCChHHc-CcCCccEEECcCC
Confidence            46777777777653211  1122345666777777766654432222222 2455666655543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.16  E-value=0.00013  Score=61.99  Aligned_cols=76  Identities=18%  Similarity=0.203  Sum_probs=35.6

Q ss_pred             CCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcE
Q 021717          123 QLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKV  201 (308)
Q Consensus       123 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~  201 (308)
                      +.+.|+..+| .++|-   .++.++|.|+.|.|+-+.++  .+..+. .|.+|++|.|..+ +.+-.-....+++|+|+.
T Consensus        20 ~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvNkIs--sL~pl~-rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   20 NVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVNKIS--SLAPLQ-RCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HhhhhcccCC-CccHH---HHHHhcccceeEEeeccccc--cchhHH-HHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            4455555555 34442   23345555555555555443  233333 2555555555433 333322333445555555


Q ss_pred             EEee
Q 021717          202 LSLR  205 (308)
Q Consensus       202 L~L~  205 (308)
                      |-|.
T Consensus        93 LWL~   96 (388)
T KOG2123|consen   93 LWLD   96 (388)
T ss_pred             Hhhc
Confidence            5554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=0.00025  Score=60.88  Aligned_cols=92  Identities=18%  Similarity=0.113  Sum_probs=41.5

Q ss_pred             HHHHHhcCCCCCEEEeCCCCCCh-HHHHHHHHcCCCCCeeEecCCCCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHH
Q 021717          140 ICKAIRMWRDLESLTMPSIANPP-YLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILIL  218 (308)
Q Consensus       140 l~~~~~~~~~L~~L~l~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~  218 (308)
                      +..+...+..+++|++.++.+++ .-+.+|..+.|.|+.|+++++.-...+.++.-...+|+.|-|.++.++...+...+
T Consensus        63 ~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l  142 (418)
T KOG2982|consen   63 VMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL  142 (418)
T ss_pred             HHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhh
Confidence            33444445555555555554432 33444444555555555554311111111111233555555555555555555555


Q ss_pred             HcCCCCCEEeccc
Q 021717          219 DGLQNLEVLNISH  231 (308)
Q Consensus       219 ~~~p~L~~L~l~~  231 (308)
                      +..|.+++|+++.
T Consensus       143 ~~lP~vtelHmS~  155 (418)
T KOG2982|consen  143 DDLPKVTELHMSD  155 (418)
T ss_pred             hcchhhhhhhhcc
Confidence            5555555554443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.14  E-value=0.026  Score=48.23  Aligned_cols=146  Identities=16%  Similarity=0.125  Sum_probs=91.5

Q ss_pred             cCCCccEEEccCCCCC--CHHHHHHHHhhCCCCcEEEcCCCCCCC--HHH----HHH-----HHhcCCCCCEEEeCCCCC
Q 021717           94 SRGSIRTLIFHFNLYV--SDDQLTYTAERCPQLKRLVMPAWNRIK--KTG----ICK-----AIRMWRDLESLTMPSIAN  160 (308)
Q Consensus        94 s~~~l~~l~l~~~~~~--~d~~l~~l~~~~~~L~~L~L~~~~~~~--~~~----l~~-----~~~~~~~L~~L~l~~~~~  160 (308)
                      .|++++.+.++.+.+-  ..+.+.-+.....+|+.|.|+++.--.  ...    +..     -+..-|.|+....+.+.+
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            3677777777654432  223344444556788888888763221  111    111     123557888888887743


Q ss_pred             C---hHHHHHHHHcCCCCCeeEecCC-CCHHHHHHH----HhcCCCCcEEEeeCCCCCHHHHHHHHH---cCCCCCEEec
Q 021717          161 P---PYLMEEIAQNCRNFRELKIMGP-FDLLFASTL----NMYLPKLKVLSLRCTTLNRDALILILD---GLQNLEVLNI  229 (308)
Q Consensus       161 ~---~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l----~~~~p~L~~L~L~~~~it~~~l~~l~~---~~p~L~~L~l  229 (308)
                      .   ........+.-.+|+.+++..+ +.+.++..+    +..+.+|+.|+|..|.+|..+-..+..   ..|.|+.|.+
T Consensus       170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l  249 (388)
T COG5238         170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL  249 (388)
T ss_pred             ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence            2   2233333333368889988766 666654433    357899999999988888766544443   3678999999


Q ss_pred             ccCCCcCCCC
Q 021717          230 SHCLLIDVPL  239 (308)
Q Consensus       230 ~~C~~i~~~~  239 (308)
                      .+|--.+.+.
T Consensus       250 nDClls~~G~  259 (388)
T COG5238         250 NDCLLSNEGV  259 (388)
T ss_pred             cchhhccccH
Confidence            9998777544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.08  E-value=0.00073  Score=58.06  Aligned_cols=105  Identities=12%  Similarity=0.142  Sum_probs=75.6

Q ss_pred             EccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEec
Q 021717          102 IFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIM  181 (308)
Q Consensus       102 ~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~  181 (308)
                      .+.++.--+......++..|..++.++|.+..-...+.+..++.++|.|+.|+++.+.+... +..+-.-..+|++|-++
T Consensus        51 vln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLN  129 (418)
T KOG2982|consen   51 VLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLN  129 (418)
T ss_pred             eecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEc
Confidence            33444434555677888899999999999875556678888999999999999998865532 22221224589999998


Q ss_pred             CC-CCHHHHHHHHhcCCCCcEEEeeCC
Q 021717          182 GP-FDLLFASTLNMYLPKLKVLSLRCT  207 (308)
Q Consensus       182 ~~-~~~~~~~~l~~~~p~L~~L~L~~~  207 (308)
                      +. ++..........+|.++.|+++.|
T Consensus       130 gT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  130 GTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             CCCCChhhhhhhhhcchhhhhhhhccc
Confidence            86 666666777777888887776643

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.07  E-value=0.00064  Score=55.14  Aligned_cols=61  Identities=11%  Similarity=0.117  Sum_probs=35.6

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCC-CCChHHHHHHHHcCCCCCeeEecC
Q 021717          121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQNCRNFRELKIMG  182 (308)
Q Consensus       121 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~l~~l~~~~~~L~~L~l~~  182 (308)
                      ++.|+.|.+..|..+.|.++..+..-.|+|+.|+|+.| .+++..+..+.+ .++|+.|.|.+
T Consensus       124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr~L~l~~  185 (221)
T KOG3864|consen  124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLRRLHLYD  185 (221)
T ss_pred             cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhHHHHhcC
Confidence            45566666666655666555555555566666666655 455555555554 55666666554

>PLN03210 Resistant to P

Probab=97.01  E-value=0.00054  Score=71.36  Aligned_cols=59  Identities=22%  Similarity=0.304  Sum_probs=31.7

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC
Q 021717          121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP  183 (308)
Q Consensus       121 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~  183 (308)
                      .++|+.|+|+++.....  +...+..+++|+.|++++|......-..  ..+++|+.|++++|
T Consensus       777 ~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~LP~~--~~L~sL~~L~Ls~c  835 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLETLPTG--INLESLESLDLSGC  835 (1153)
T ss_pred             cccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCeeCCC--CCccccCEEECCCC
Confidence            35677777766543322  2333567778888888776311111000  13566777777665

syringae 6; Provisional

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=97.01  E-value=0.00031  Score=60.98  Aligned_cols=45  Identities=29%  Similarity=0.568  Sum_probs=41.4

Q ss_pred             CCCC----HHHHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCcceeeec
Q 021717           12 EDLD----NDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDL   57 (308)
Q Consensus        12 ~~LP----~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~l   57 (308)
                      ..||    ++|-..||+||+..++.. +-.|||+|+++..+|.+|+.+-.
T Consensus        76 ~~lP~~gl~hi~e~ilsyld~~sLc~-celv~k~W~r~l~dg~~WKkLie  124 (499)
T KOG0281|consen   76 TALPEQGLDHIAENILSYLDALSLCA-CELVCKEWKRVLSDGMLWKKLIE  124 (499)
T ss_pred             HhcccccHHHHHHHHHHhcchhhhhH-HHHHHHHHHHHhccchHHHHHHH
Confidence            6799    999999999999999999 99999999999999999986643

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=96.92  E-value=0.0008  Score=60.33  Aligned_cols=38  Identities=29%  Similarity=0.621  Sum_probs=34.4

Q ss_pred             CCcCCCCHHHHHHHhcCC-ChHHHhhHHhHhhHHHHHhcc
Q 021717            9 RRWEDLDNDILVKIFQSF-DIFELTSGIAHVCSSWRSACC   47 (308)
Q Consensus         9 ~~~~~LP~eiL~~If~~L-~~~d~~~~~s~VCr~Wr~~~~   47 (308)
                      .+|++||+|+|..|...| ...|+++ .+.||+.||..+.
T Consensus         2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~-~~~vC~sWr~a~~   40 (373)
T PLN03215          2 ADWSTLPEELLHMIAGRLFSNVELKR-FRSICRSWRSSVS   40 (373)
T ss_pred             CChhhCCHHHHHHHHhhCCcHHHHHH-HHhhhhhHHHhcc
Confidence            479999999999999999 4678888 9999999999875

>PLN03210 Resistant to P

Probab=96.69  E-value=0.0013  Score=68.55  Aligned_cols=129  Identities=18%  Similarity=0.271  Sum_probs=82.2

Q ss_pred             CccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCC
Q 021717           97 SIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFR  176 (308)
Q Consensus        97 ~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~  176 (308)
                      .++.+.+..+.....  +..-...+++|+.|++.+|..+..  +.... .+++|+.|++++|...    ..+....++|+
T Consensus       779 sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~--LP~~~-~L~sL~~L~Ls~c~~L----~~~p~~~~nL~  849 (1153)
T PLN03210        779 SLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLET--LPTGI-NLESLESLDLSGCSRL----RTFPDISTNIS  849 (1153)
T ss_pred             cchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCe--eCCCC-CccccCEEECCCCCcc----ccccccccccC
Confidence            455666654432211  111234689999999999866542  11111 5789999999998321    11122346899


Q ss_pred             eeEecCC-CCHHHHHHHHhcCCCCcEEEee-CCCCCHHHHHHHHHcCCCCCEEecccCCCcCCC
Q 021717          177 ELKIMGP-FDLLFASTLNMYLPKLKVLSLR-CTTLNRDALILILDGLQNLEVLNISHCLLIDVP  238 (308)
Q Consensus       177 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~-~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~~  238 (308)
                      .|.+++. +.. .... ...+++|+.|+|. |+.++.  +..-...+++|+.|++++|..++..
T Consensus       850 ~L~Ls~n~i~~-iP~s-i~~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        850 DLNLSRTGIEE-VPWW-IEKFSNLSFLDMNGCNNLQR--VSLNISKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             EeECCCCCCcc-ChHH-HhcCCCCCEEECCCCCCcCc--cCcccccccCCCeeecCCCcccccc
Confidence            9999876 331 1122 3479999999998 566653  2233456899999999999988743

syringae 6; Provisional

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.60  E-value=0.039  Score=47.14  Aligned_cols=116  Identities=14%  Similarity=0.119  Sum_probs=80.8

Q ss_pred             HhhCCCCcEEEcCCCCCC--CHHHHHHHHhcCCCCCEEEeCCCCCChH-------HHHHHH-----HcCCCCCeeEecCC
Q 021717          118 AERCPQLKRLVMPAWNRI--KKTGICKAIRMWRDLESLTMPSIANPPY-------LMEEIA-----QNCRNFRELKIMGP  183 (308)
Q Consensus       118 ~~~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~l~~~~~~~~-------~l~~l~-----~~~~~L~~L~l~~~  183 (308)
                      .-.||+|+..+|+....-  +...+..++++-.+|++|.+++|.+++.       .+..++     ..-|.|++.....+
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            346999999999975322  3456777888889999999999855432       222332     24577888877654


Q ss_pred             ----CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHH----HcCCCCCEEecccCC
Q 021717          184 ----FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILIL----DGLQNLEVLNISHCL  233 (308)
Q Consensus       184 ----~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~----~~~p~L~~L~l~~C~  233 (308)
                          .+-.......++-.+|+.+.+..|.|-.+|+.+++    ..|.+|+.|||.+..
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt  225 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT  225 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence                22233334444557999999999999999877654    348999999998654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.47  E-value=0.0023  Score=38.86  Aligned_cols=35  Identities=34%  Similarity=0.381  Sum_probs=25.5

Q ss_pred             CCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          197 PKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       197 p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      ++|++|+++++.+++  +...+..+|+|+.|+++++.
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence            578888888888875  44446778889999888885

...

>PLN03150 hypothetical protein; Provisional

Probab=96.45  E-value=0.0047  Score=60.17  Aligned_cols=86  Identities=16%  Similarity=0.205  Sum_probs=38.8

Q ss_pred             HhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCC
Q 021717          144 IRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQ  222 (308)
Q Consensus       144 ~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p  222 (308)
                      +..+++|+.|+|+++.+....-..+. .+++|+.|+++++ +.......+ ..+++|+.|+|++|.++...-..+.....
T Consensus       438 i~~L~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~  515 (623)
T PLN03150        438 ISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESL-GQLTSLRILNLNGNSLSGRVPAALGGRLL  515 (623)
T ss_pred             HhCCCCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCCCCCCCchHH-hcCCCCCEEECcCCcccccCChHHhhccc
Confidence            44556666666666544332222222 3556666666554 221111122 25566666666655544322222222223


Q ss_pred             CCCEEeccc
Q 021717          223 NLEVLNISH  231 (308)
Q Consensus       223 ~L~~L~l~~  231 (308)
                      ++..+++.+
T Consensus       516 ~~~~l~~~~  524 (623)
T PLN03150        516 HRASFNFTD  524 (623)
T ss_pred             cCceEEecC
Confidence            444555543

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=96.39  E-value=0.0039  Score=33.12  Aligned_cols=21  Identities=33%  Similarity=0.729  Sum_probs=9.6

Q ss_pred             CCCcEEEee-CCCCCHHHHHHH
Q 021717          197 PKLKVLSLR-CTTLNRDALILI  217 (308)
Q Consensus       197 p~L~~L~L~-~~~it~~~l~~l  217 (308)
                      |+|++|+|+ |..+||.++..+
T Consensus         2 ~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        2 PNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCEeCCCCCCCcCHHHHHHH
Confidence            444444444 334444444443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.30  E-value=0.00013  Score=47.92  Aligned_cols=38  Identities=29%  Similarity=0.339  Sum_probs=20.5

Q ss_pred             cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      .+++|++|+++++.++.-. ...+.++|+|++|++++|.
T Consensus        23 ~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen   23 NLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSS
T ss_pred             CCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCc
Confidence            5566666666655554211 1234556666666666653

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=96.29  E-value=0.0059  Score=32.41  Aligned_cols=24  Identities=25%  Similarity=0.564  Sum_probs=15.4

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHH
Q 021717          121 CPQLKRLVMPAWNRIKKTGICKAI  144 (308)
Q Consensus       121 ~~~L~~L~L~~~~~~~~~~l~~~~  144 (308)
                      ||+|+.|+|++|..++|.++..+.
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            566666777766666666665543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.22  E-value=0.00021  Score=46.88  Aligned_cols=59  Identities=20%  Similarity=0.209  Sum_probs=27.0

Q ss_pred             CCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCC
Q 021717          148 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTT  208 (308)
Q Consensus       148 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~  208 (308)
                      |+|++|+++++.+..-.- .....+++|++|+++++ +..-. ......+|+|++|+++++.
T Consensus         1 p~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPP-DSFSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECT-TTTTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCH-HHHcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCc
Confidence            345555555553321100 11123556666666554 21100 0123467777777777654

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.08  E-value=0.004  Score=53.73  Aligned_cols=105  Identities=16%  Similarity=0.126  Sum_probs=64.2

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      -.|.++.|+++...-.+..   + +..+++|++||++++.++  .+...-...-|+++|.+.++ +.+  + .-...+-+
T Consensus       305 L~Pkir~L~lS~N~i~~v~---n-La~L~~L~~LDLS~N~Ls--~~~Gwh~KLGNIKtL~La~N~iE~--L-SGL~KLYS  375 (490)
T KOG1259|consen  305 LAPKLRRLILSQNRIRTVQ---N-LAELPQLQLLDLSGNLLA--ECVGWHLKLGNIKTLKLAQNKIET--L-SGLRKLYS  375 (490)
T ss_pred             hccceeEEeccccceeeeh---h-hhhcccceEeecccchhH--hhhhhHhhhcCEeeeehhhhhHhh--h-hhhHhhhh
Confidence            3578888888765322222   2 456778888888877443  22222334567788887765 221  1 11235667


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      |..|++++|+|..-.-..-+.+.|.||.|.+.+..
T Consensus       376 LvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  376 LVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             heeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            88888888887643322334568889988887654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=95.98  E-value=0.001  Score=62.67  Aligned_cols=68  Identities=25%  Similarity=0.255  Sum_probs=40.6

Q ss_pred             cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcCCCCCCChhHHhhhhhHHHHHHHHhhhhhhccccccccc
Q 021717          195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIM  274 (308)
Q Consensus       195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~c~~~~c~~  274 (308)
                      .+++|+.|+|++|.||.-.  .-.....+||+|+++.......              +.-+-+.++|+++..-.+     
T Consensus       243 ~l~~LrrLNLS~N~iteL~--~~~~~W~~lEtLNlSrNQLt~L--------------P~avcKL~kL~kLy~n~N-----  301 (1255)
T KOG0444|consen  243 KLRNLRRLNLSGNKITELN--MTEGEWENLETLNLSRNQLTVL--------------PDAVCKLTKLTKLYANNN-----  301 (1255)
T ss_pred             hhhhhheeccCcCceeeee--ccHHHHhhhhhhccccchhccc--------------hHHHhhhHHHHHHHhccC-----
Confidence            5678888888887776432  2234456788888876543321              223455567777665433     


Q ss_pred             ccCccCcccchh
Q 021717          275 CQRTKNDEGIMR  286 (308)
Q Consensus       275 ~~~~~~~~~~~~  286 (308)
                         .++.+|+++
T Consensus       302 ---kL~FeGiPS  310 (1255)
T KOG0444|consen  302 ---KLTFEGIPS  310 (1255)
T ss_pred             ---cccccCCcc
Confidence               466666655

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.84  E-value=0.0053  Score=51.79  Aligned_cols=60  Identities=22%  Similarity=0.166  Sum_probs=27.7

Q ss_pred             cCCCCCEEEeCCCCC-ChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEee
Q 021717          146 MWRDLESLTMPSIAN-PPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLR  205 (308)
Q Consensus       146 ~~~~L~~L~l~~~~~-~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~  205 (308)
                      .+|+|+.|.++.+.. ....+..++..||+|++|+++++ +.+-....-.+.+++|..|++.
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~  124 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLF  124 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcc
Confidence            455666666666521 12334444445555555555554 2221111112344555555554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=95.83  E-value=0.0014  Score=61.21  Aligned_cols=82  Identities=21%  Similarity=0.190  Sum_probs=45.7

Q ss_pred             cCCCCCEEEeCCCCCC---hHHHHHHHHcCCCCCeeEecCCCCHHHHHHHHhcCCCCcEEEeeCCCC----CHHHHHHHH
Q 021717          146 MWRDLESLTMPSIANP---PYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTL----NRDALILIL  218 (308)
Q Consensus       146 ~~~~L~~L~l~~~~~~---~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~i----t~~~l~~l~  218 (308)
                      .+++|++|+|+++.++   ...+..    ..+|++|+|+.+--+.-.......+.+|+.|+|+.|.+    .|.+  ...
T Consensus       315 ftqkL~~LdLs~N~i~~l~~~sf~~----L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa--~~f  388 (873)
T KOG4194|consen  315 FTQKLKELDLSSNRITRLDEGSFRV----LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA--VAF  388 (873)
T ss_pred             hcccceeEeccccccccCChhHHHH----HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch--hhh
Confidence            4555666666655332   223322    23455566555422222222234678888888886654    3322  345


Q ss_pred             HcCCCCCEEecccCC
Q 021717          219 DGLQNLEVLNISHCL  233 (308)
Q Consensus       219 ~~~p~L~~L~l~~C~  233 (308)
                      .++|.|+.|.+.|..
T Consensus       389 ~gl~~LrkL~l~gNq  403 (873)
T KOG4194|consen  389 NGLPSLRKLRLTGNQ  403 (873)
T ss_pred             ccchhhhheeecCce
Confidence            668889999888764

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.54  E-value=0.0065  Score=51.26  Aligned_cols=86  Identities=19%  Similarity=0.261  Sum_probs=43.0

Q ss_pred             CCCCCeeEecCC--CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcCCCCCCChhHHhhh
Q 021717          172 CRNFRELKIMGP--FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKK  249 (308)
Q Consensus       172 ~~~L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~~~~~~~~~~~~~  249 (308)
                      .|+|+.|.++.+  -...++..++..+|+|++|++++|.+.+-.-..=++..++|.+|++..|.-...          ..
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l----------~d  133 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNL----------DD  133 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcccc----------cc
Confidence            456666666554  222233444455677777777666665311111223456666666666653331          22


Q ss_pred             hhHHHHHHHHhhhhhhcc
Q 021717          250 LDRTILQKAARLRKFLTC  267 (308)
Q Consensus       250 ~~~~i~~~~~~l~~~~~c  267 (308)
                      ..+.+.....+|+.+..|
T Consensus       134 yre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  134 YREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             HHHHHHHHhhhhcccccc
Confidence            333345555555554444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.22  E-value=0.0082  Score=48.89  Aligned_cols=86  Identities=16%  Similarity=0.174  Sum_probs=42.7

Q ss_pred             HhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCH-HHHHHHHhcCCCCcEEEeeCCCCCHHHHH--HHHH
Q 021717          144 IRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDL-LFASTLNMYLPKLKVLSLRCTTLNRDALI--LILD  219 (308)
Q Consensus       144 ~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~-~~~~~l~~~~p~L~~L~L~~~~it~~~l~--~l~~  219 (308)
                      +..++.|..|.++++.++. .-..+....|+|+.|.+.++ +.. .++..+ ..||+|++|.+-++.+++..=.  .++-
T Consensus        60 lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL-a~~p~L~~Ltll~Npv~~k~~YR~yvl~  137 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSIQELGDLDPL-ASCPKLEYLTLLGNPVEHKKNYRLYVLY  137 (233)
T ss_pred             CCCccccceEEecCCccee-eccchhhhccccceEEecCcchhhhhhcchh-ccCCccceeeecCCchhcccCceeEEEE
Confidence            3455666666666664431 11122233566666666554 111 112222 2566777777666666544321  1222


Q ss_pred             cCCCCCEEeccc
Q 021717          220 GLQNLEVLNISH  231 (308)
Q Consensus       220 ~~p~L~~L~l~~  231 (308)
                      ..|+|+.||...
T Consensus       138 klp~l~~LDF~k  149 (233)
T KOG1644|consen  138 KLPSLRTLDFQK  149 (233)
T ss_pred             ecCcceEeehhh
Confidence            356677776654

>PLN03150 hypothetical protein; Provisional

Probab=95.13  E-value=0.02  Score=55.87  Aligned_cols=83  Identities=18%  Similarity=0.269  Sum_probs=59.5

Q ss_pred             CCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEE
Q 021717          149 DLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVL  227 (308)
Q Consensus       149 ~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L  227 (308)
                      .++.|+|+++.+....-..+. .+++|+.|+|+++ +....... ...+++|+.|+|+++.++... ...+..+++|+.|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~-~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L  495 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRIL  495 (623)
T ss_pred             EEEEEECCCCCccccCCHHHh-CCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEE
Confidence            377888988866544444444 4899999999887 43222222 348999999999988876432 3345689999999


Q ss_pred             ecccCCC
Q 021717          228 NISHCLL  234 (308)
Q Consensus       228 ~l~~C~~  234 (308)
                      +|+++..
T Consensus       496 ~Ls~N~l  502 (623)
T PLN03150        496 NLNGNSL  502 (623)
T ss_pred             ECcCCcc
Confidence            9998763

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=95.07  E-value=0.016  Score=30.01  Aligned_cols=23  Identities=17%  Similarity=0.309  Sum_probs=14.3

Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHH
Q 021717          196 LPKLKVLSLRCTTLNRDALILIL  218 (308)
Q Consensus       196 ~p~L~~L~L~~~~it~~~l~~l~  218 (308)
                      +++|++|+|+++.++++++..+.
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhC
Confidence            46777777777777777776654

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=95.07  E-value=0.0026  Score=61.02  Aligned_cols=102  Identities=19%  Similarity=0.211  Sum_probs=60.7

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHH-cCCCCCeeEecCC-CCHHHHHHHHhcCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQ-NCRNFRELKIMGP-FDLLFASTLNMYLP  197 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~-~~~~L~~L~l~~~-~~~~~~~~l~~~~p  197 (308)
                      -.|.|+.|+|+.. +++.-   ..+..|+.|++|||++|.+..  +..+.. .|. |..|.|.++ ++.  +.. ..++.
T Consensus       185 ll~ale~LnLshN-k~~~v---~~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc~-L~~L~lrnN~l~t--L~g-ie~Lk  254 (1096)
T KOG1859|consen  185 LLPALESLNLSHN-KFTKV---DNLRRLPKLKHLDLSYNCLRH--VPQLSMVGCK-LQLLNLRNNALTT--LRG-IENLK  254 (1096)
T ss_pred             HHHHhhhhccchh-hhhhh---HHHHhcccccccccccchhcc--ccccchhhhh-heeeeecccHHHh--hhh-HHhhh
Confidence            3578999999976 44442   267789999999999985431  112221 243 888888766 221  112 34788


Q ss_pred             CCcEEEeeCCCCCHHHHHHHHHcCCCCCEEeccc
Q 021717          198 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISH  231 (308)
Q Consensus       198 ~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~  231 (308)
                      +|+.|++++|-+++..=...+-.+..|..|.|.|
T Consensus       255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG  288 (1096)
T KOG1859|consen  255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG  288 (1096)
T ss_pred             hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence            8888888877665443222222233444555544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.06  E-value=0.034  Score=33.65  Aligned_cols=37  Identities=16%  Similarity=0.228  Sum_probs=19.0

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCC
Q 021717          122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANP  161 (308)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~  161 (308)
                      ++|++|++++. .+++  +...+.++++|+.|+++++.++
T Consensus         1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecCCCCC
Confidence            35666666655 3332  2333556666666666666443

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=94.79  E-value=0.026  Score=29.17  Aligned_cols=23  Identities=17%  Similarity=0.091  Sum_probs=12.9

Q ss_pred             CCCCCEEEeCCCCCChHHHHHHH
Q 021717          147 WRDLESLTMPSIANPPYLMEEIA  169 (308)
Q Consensus       147 ~~~L~~L~l~~~~~~~~~l~~l~  169 (308)
                      +++|++|+|++|.++++.+..++
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhC
Confidence            35666666666666666666554

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.56  E-value=0.011  Score=50.49  Aligned_cols=87  Identities=13%  Similarity=0.019  Sum_probs=65.3

Q ss_pred             CCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCC
Q 021717          147 WRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLE  225 (308)
Q Consensus       147 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~  225 (308)
                      +.+.+.|++.+|.++|-.+   .+..|.|+.|.|+-+ ++.   .+-+..|.+|+.|.|.-|.|.+-.=...+++.|+|+
T Consensus        18 l~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNkIss---L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNKISS---LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHhhhhcccCCCccHHHH---HHhcccceeEEeecccccc---chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            3467888999998876544   456899999999854 332   223458999999999988888777667788999999


Q ss_pred             EEecccCCCcCCCC
Q 021717          226 VLNISHCLLIDVPL  239 (308)
Q Consensus       226 ~L~l~~C~~i~~~~  239 (308)
                      .|.|....-....+
T Consensus        92 ~LWL~ENPCc~~ag  105 (388)
T KOG2123|consen   92 TLWLDENPCCGEAG  105 (388)
T ss_pred             hHhhccCCcccccc
Confidence            99998765554444

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=93.26  E-value=0.13  Score=27.66  Aligned_cols=24  Identities=21%  Similarity=0.375  Sum_probs=19.7

Q ss_pred             CCCcEEEeeCCCCCHHHHHHHHHc
Q 021717          197 PKLKVLSLRCTTLNRDALILILDG  220 (308)
Q Consensus       197 p~L~~L~L~~~~it~~~l~~l~~~  220 (308)
                      ++|++|+|++|.+++++...+.+.
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~~   25 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAEA   25 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHHH
Confidence            578899999999998888877654

>PF13013 F-box-like_2: F-box-like domain

Probab=93.26  E-value=0.13  Score=37.79  Aligned_cols=29  Identities=24%  Similarity=0.318  Sum_probs=26.5

Q ss_pred             cCCCCHHHHHHHhcCCChHHHhhHHhHhhH
Q 021717           11 WEDLDNDILVKIFQSFDIFELTSGIAHVCS   40 (308)
Q Consensus        11 ~~~LP~eiL~~If~~L~~~d~~~~~s~VCr   40 (308)
                      +.+||.||+..||.+-+..+... ++..|+
T Consensus        22 l~DLP~ELl~~I~~~C~~~~l~~-l~~~~~   50 (109)
T PF13013_consen   22 LLDLPWELLQLIFDYCNDPILLA-LSRTCR   50 (109)
T ss_pred             hhhChHHHHHHHHhhcCcHHHHH-HHHHHH
Confidence            78899999999999999999988 788887

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=93.22  E-value=0.047  Score=47.36  Aligned_cols=79  Identities=18%  Similarity=0.229  Sum_probs=48.2

Q ss_pred             cCCCCCEEEeCCCCCC--hHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCC
Q 021717          146 MWRDLESLTMPSIANP--PYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQ  222 (308)
Q Consensus       146 ~~~~L~~L~l~~~~~~--~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p  222 (308)
                      .+.-|++||++++.++  +++++    -.|+++.|.++.+ +...+  . ...+++|++|+|++|.++.  +.-+-....
T Consensus       282 TWq~LtelDLS~N~I~~iDESvK----L~Pkir~L~lS~N~i~~v~--n-La~L~~L~~LDLS~N~Ls~--~~Gwh~KLG  352 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDESVK----LAPKLRRLILSQNRIRTVQ--N-LAELPQLQLLDLSGNLLAE--CVGWHLKLG  352 (490)
T ss_pred             hHhhhhhccccccchhhhhhhhh----hccceeEEeccccceeeeh--h-hhhcccceEeecccchhHh--hhhhHhhhc
Confidence            5677888888888543  34443    3588888888876 32211  1 2368888888888877653  112223445


Q ss_pred             CCCEEecccCC
Q 021717          223 NLEVLNISHCL  233 (308)
Q Consensus       223 ~L~~L~l~~C~  233 (308)
                      |++.|.+++..
T Consensus       353 NIKtL~La~N~  363 (490)
T KOG1259|consen  353 NIKTLKLAQNK  363 (490)
T ss_pred             CEeeeehhhhh
Confidence            56666555443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=93.08  E-value=0.015  Score=55.28  Aligned_cols=107  Identities=19%  Similarity=0.103  Sum_probs=59.7

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCC
Q 021717          121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL  199 (308)
Q Consensus       121 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L  199 (308)
                      ...|-.|+|+...   -+.+..-++.+..|++|+|+++.+....+.++-. ...|+.|++++- -+-..+..-...+.+|
T Consensus       149 LtDLLfLDLS~Nr---Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs-mtsL~vLhms~TqRTl~N~Ptsld~l~NL  224 (1255)
T KOG0444|consen  149 LTDLLFLDLSNNR---LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPS-MTSLSVLHMSNTQRTLDNIPTSLDDLHNL  224 (1255)
T ss_pred             hHhHhhhccccch---hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCcc-chhhhhhhcccccchhhcCCCchhhhhhh
Confidence            3445555555431   1223334456667888888877655444544332 345556666543 1111111223467788


Q ss_pred             cEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          200 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       200 ~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      +.+++++|.++.  +..-+-..++|+.|++++..
T Consensus       225 ~dvDlS~N~Lp~--vPecly~l~~LrrLNLS~N~  256 (1255)
T KOG0444|consen  225 RDVDLSENNLPI--VPECLYKLRNLRRLNLSGNK  256 (1255)
T ss_pred             hhccccccCCCc--chHHHhhhhhhheeccCcCc
Confidence            888998887652  22333456889999998765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=92.83  E-value=0.069  Score=52.89  Aligned_cols=102  Identities=18%  Similarity=0.206  Sum_probs=66.8

Q ss_pred             CCccEEEccCCC--CCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCC
Q 021717           96 GSIRTLIFHFNL--YVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR  173 (308)
Q Consensus        96 ~~l~~l~l~~~~--~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~  173 (308)
                      .+++.+++.+++  .+.+..+.    +.+.|++|.|++. +++.  +...+..|+.|+.|...++.+.  .+..+++ .|
T Consensus       383 ~hLKVLhLsyNrL~~fpas~~~----kle~LeeL~LSGN-kL~~--Lp~tva~~~~L~tL~ahsN~l~--~fPe~~~-l~  452 (1081)
T KOG0618|consen  383 KHLKVLHLSYNRLNSFPASKLR----KLEELEELNLSGN-KLTT--LPDTVANLGRLHTLRAHSNQLL--SFPELAQ-LP  452 (1081)
T ss_pred             cceeeeeecccccccCCHHHHh----chHHhHHHhcccc-hhhh--hhHHHHhhhhhHHHhhcCCcee--echhhhh-cC
Confidence            466777776652  23344333    4568999999986 3332  4456678889999988887543  2224443 78


Q ss_pred             CCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCC
Q 021717          174 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTT  208 (308)
Q Consensus       174 ~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~  208 (308)
                      .|+.++++++ ++...+.... .-|+|++|+|+||.
T Consensus       453 qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  453 QLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT  487 (1081)
T ss_pred             cceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence            9999999876 4443333322 22799999999876

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=92.21  E-value=0.19  Score=50.88  Aligned_cols=106  Identities=21%  Similarity=0.204  Sum_probs=56.5

Q ss_pred             hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCC--hHHHHHHHHcCCCCCeeEecCCCCHHHHHHHHhcC
Q 021717          119 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANP--PYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYL  196 (308)
Q Consensus       119 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~--~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~  196 (308)
                      ...|.|+.|+|+++...+  .+...++.+-+|+.|++++..+.  +..+.    ..++|.+|++...-.-.....+...+
T Consensus       568 ~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t~I~~LP~~l~----~Lk~L~~Lnl~~~~~l~~~~~i~~~L  641 (889)
T KOG4658|consen  568 RSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDTGISHLPSGLG----NLKKLIYLNLEVTGRLESIPGILLEL  641 (889)
T ss_pred             hhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCCCccccchHHH----HHHhhheeccccccccccccchhhhc
Confidence            346777777777653332  23444555567777777766544  22222    24466777765431111123344468


Q ss_pred             CCCcEEEeeCCC--CCHHHHHHHHHcCCCCCEEeccc
Q 021717          197 PKLKVLSLRCTT--LNRDALILILDGLQNLEVLNISH  231 (308)
Q Consensus       197 p~L~~L~L~~~~--it~~~l~~l~~~~p~L~~L~l~~  231 (308)
                      ++||+|.+.+..  .+...+.. +....+|+.|.+..
T Consensus       642 ~~Lr~L~l~~s~~~~~~~~l~e-l~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  642 QSLRVLRLPRSALSNDKLLLKE-LENLEHLENLSITI  677 (889)
T ss_pred             ccccEEEeeccccccchhhHHh-hhcccchhhheeec
Confidence            899999988544  22323333 34555566555543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.85  E-value=0.14  Score=48.11  Aligned_cols=141  Identities=16%  Similarity=0.145  Sum_probs=70.6

Q ss_pred             CCccEEEccCCCCCCHHHHHHHHhhC----CCCcEEEcCCCCCCCHHH---HHHHHhcCCCCCEEEeCCCCCChHHHHHH
Q 021717           96 GSIRTLIFHFNLYVSDDQLTYTAERC----PQLKRLVMPAWNRIKKTG---ICKAIRMWRDLESLTMPSIANPPYLMEEI  168 (308)
Q Consensus        96 ~~l~~l~l~~~~~~~d~~l~~l~~~~----~~L~~L~L~~~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~l~~l  168 (308)
                      ..+..+.++++. +++.....+....    ..|+.|.+..| .++..+   +...+.....|+++++..|.+.......+
T Consensus       115 ~~L~~L~l~~n~-l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l  192 (478)
T KOG4308|consen  115 PTLGQLDLSGNN-LGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVL  192 (478)
T ss_pred             ccHhHhhcccCC-CccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHHHhcccchhHHHHHhcccchhhhHHH
Confidence            344455555543 3355554444332    23455555555 333332   33334445666666776664433333222


Q ss_pred             HHc-------CCCCCeeEecCC-CCHHHHHHHH---hcCCC-CcEEEeeCCCCCHHHHHHHHHcC----CCCCEEecccC
Q 021717          169 AQN-------CRNFRELKIMGP-FDLLFASTLN---MYLPK-LKVLSLRCTTLNRDALILILDGL----QNLEVLNISHC  232 (308)
Q Consensus       169 ~~~-------~~~L~~L~l~~~-~~~~~~~~l~---~~~p~-L~~L~L~~~~it~~~l~~l~~~~----p~L~~L~l~~C  232 (308)
                      .+.       ..++++|++.++ ++......+.   ...+. ++.|++.++.+.|.++..+....    +.++.+++..|
T Consensus       193 ~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n  272 (478)
T KOG4308|consen  193 SQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRN  272 (478)
T ss_pred             hhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcC
Confidence            221       235667777665 4444333332   23333 55566666777766666555543    34467777766


Q ss_pred             CCcCCC
Q 021717          233 LLIDVP  238 (308)
Q Consensus       233 ~~i~~~  238 (308)
                      ...+.+
T Consensus       273 si~~~~  278 (478)
T KOG4308|consen  273 SITEKG  278 (478)
T ss_pred             Cccccc
Confidence            655543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=90.67  E-value=0.18  Score=45.35  Aligned_cols=86  Identities=20%  Similarity=0.140  Sum_probs=47.4

Q ss_pred             HHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCCCCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcC
Q 021717          142 KAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGL  221 (308)
Q Consensus       142 ~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~  221 (308)
                      ..++.+|+|+.|+++++.++.-.-.++. ....++.|.+..+--...-..+..++.+|+.|+|.+|+||--+-.+ ++..
T Consensus       268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe-~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a-F~~~  345 (498)
T KOG4237|consen  268 KCFKKLPNLRKLNLSNNKITRIEDGAFE-GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA-FQTL  345 (498)
T ss_pred             HHHhhcccceEeccCCCccchhhhhhhc-chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc-cccc
Confidence            3466778888888887765532222222 2446777777655211222234457777888888777765332221 2334


Q ss_pred             CCCCEEec
Q 021717          222 QNLEVLNI  229 (308)
Q Consensus       222 p~L~~L~l  229 (308)
                      ..|.+|++
T Consensus       346 ~~l~~l~l  353 (498)
T KOG4237|consen  346 FSLSTLNL  353 (498)
T ss_pred             ceeeeeeh
Confidence            45555555

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=90.53  E-value=0.11  Score=49.54  Aligned_cols=44  Identities=20%  Similarity=0.474  Sum_probs=37.8

Q ss_pred             cCCCCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhccC-CCcceee
Q 021717           11 WEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCD-PLLWKTL   55 (308)
Q Consensus        11 ~~~LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~-p~lw~~i   55 (308)
                      +.-||.|+...||.+|+.++++. +++||+.|+.++.+ +..|+..
T Consensus       108 i~~lp~el~~~il~~Ld~~~l~~-~~~v~~~w~~~~~~~~~~~~~~  152 (537)
T KOG0274|consen  108 LSLLPSELSLHILSFLDGRDLLA-VRQVCRNWNKLLDDDKVWWRMC  152 (537)
T ss_pred             hhcccchhcccccccCCHHHhhh-hhhhcchhhhhhhccchhhhhh
Confidence            36799999999999999999999 99999999999987 4455433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=89.32  E-value=0.36  Score=48.07  Aligned_cols=11  Identities=27%  Similarity=0.510  Sum_probs=5.7

Q ss_pred             CCCcEEEcCCC
Q 021717          122 PQLKRLVMPAW  132 (308)
Q Consensus       122 ~~L~~L~L~~~  132 (308)
                      ++|++|+++++
T Consensus       242 ~~Lk~LdLs~N  252 (788)
T PRK15387        242 PELRTLEVSGN  252 (788)
T ss_pred             CCCcEEEecCC
Confidence            45555555543

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=89.25  E-value=0.66  Score=24.89  Aligned_cols=24  Identities=13%  Similarity=0.044  Sum_probs=16.0

Q ss_pred             CCCCEEEeCCCCCChHHHHHHHHc
Q 021717          148 RDLESLTMPSIANPPYLMEEIAQN  171 (308)
Q Consensus       148 ~~L~~L~l~~~~~~~~~l~~l~~~  171 (308)
                      +.|++|+|++|.++++...++++.
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~~   25 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAEA   25 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHHH
Confidence            456777777777777666666553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=89.21  E-value=0.76  Score=45.86  Aligned_cols=51  Identities=16%  Similarity=0.178  Sum_probs=29.0

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC
Q 021717          122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP  183 (308)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~  183 (308)
                      ++|+.|.+... .++.     +-...++|++|++++|.++.-  .   ...++|+.|++.++
T Consensus       222 ~~L~~L~L~~N-~Lt~-----LP~lp~~Lk~LdLs~N~LtsL--P---~lp~sL~~L~Ls~N  272 (788)
T PRK15387        222 AHITTLVIPDN-NLTS-----LPALPPELRTLEVSGNQLTSL--P---VLPPGLLELSIFSN  272 (788)
T ss_pred             cCCCEEEccCC-cCCC-----CCCCCCCCcEEEecCCccCcc--c---CcccccceeeccCC
Confidence            46788887764 3332     112357899999988855421  1   11345666655543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=88.42  E-value=0.15  Score=48.03  Aligned_cols=87  Identities=20%  Similarity=0.224  Sum_probs=41.9

Q ss_pred             CCCCCEEEeCCCCCChHHHHHHHHcC---CC-CCeeEecCC-CCHHHHHHHHhcCC----CCcEEEeeCCCCCHHHHHH-
Q 021717          147 WRDLESLTMPSIANPPYLMEEIAQNC---RN-FRELKIMGP-FDLLFASTLNMYLP----KLKVLSLRCTTLNRDALIL-  216 (308)
Q Consensus       147 ~~~L~~L~l~~~~~~~~~l~~l~~~~---~~-L~~L~l~~~-~~~~~~~~l~~~~p----~L~~L~L~~~~it~~~l~~-  216 (308)
                      ..++++|.+.+|.++......+....   +. +..|++..+ +.|.++..+.+.++    .++++++..+.+++.+... 
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            34566666666655544443333322   22 333445443 44444444443332    3356666655555544332 


Q ss_pred             --HHHcCCCCCEEecccCC
Q 021717          217 --ILDGLQNLEVLNISHCL  233 (308)
Q Consensus       217 --l~~~~p~L~~L~l~~C~  233 (308)
                        .+..|+.++.|.+..-.
T Consensus       283 ~~~l~~~~~l~~l~l~~n~  301 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNP  301 (478)
T ss_pred             HHHHhhhHHHHHhhcccCc
Confidence              33345566666665433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=88.38  E-value=0.34  Score=39.70  Aligned_cols=84  Identities=14%  Similarity=0.210  Sum_probs=53.9

Q ss_pred             cCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCC
Q 021717          146 MWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNL  224 (308)
Q Consensus       146 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L  224 (308)
                      ...+...++++.+.+..  +.. .-+.++|.+|.++.+ ++.- ...+...+|+|+.|.|.+|.+-.-+=..=+..||+|
T Consensus        40 ~~d~~d~iDLtdNdl~~--l~~-lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L  115 (233)
T KOG1644|consen   40 TLDQFDAIDLTDNDLRK--LDN-LPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL  115 (233)
T ss_pred             cccccceecccccchhh--ccc-CCCccccceEEecCCcceee-ccchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence            34567778887764321  111 125678999999876 3321 112445689999999998887544422334579999


Q ss_pred             CEEecccCC
Q 021717          225 EVLNISHCL  233 (308)
Q Consensus       225 ~~L~l~~C~  233 (308)
                      ++|.+-+..
T Consensus       116 ~~Ltll~Np  124 (233)
T KOG1644|consen  116 EYLTLLGNP  124 (233)
T ss_pred             ceeeecCCc
Confidence            999987644

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=88.37  E-value=0.91  Score=42.71  Aligned_cols=88  Identities=16%  Similarity=0.225  Sum_probs=48.2

Q ss_pred             HHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCC--CCC-hHHHHHHHHcCCCCCeeEecCC-C-----
Q 021717          114 LTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI--ANP-PYLMEEIAQNCRNFRELKIMGP-F-----  184 (308)
Q Consensus       114 l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~-~~~l~~l~~~~~~L~~L~l~~~-~-----  184 (308)
                      +..+..+.|.+..++|+...-..-+++..+....|+|+.|+|+++  .+. ..-+..+  ....|++|-+.|+ +     
T Consensus       210 L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~  287 (585)
T KOG3763|consen  210 LKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFS  287 (585)
T ss_pred             HHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchh
Confidence            445555667777777776544455566666677777777777766  221 1122222  2345666666654 1     


Q ss_pred             -CHHHHHHHHhcCCCCcEEE
Q 021717          185 -DLLFASTLNMYLPKLKVLS  203 (308)
Q Consensus       185 -~~~~~~~l~~~~p~L~~L~  203 (308)
                       ..+.+.++.+.+|+|..|+
T Consensus       288 ~~s~yv~~i~~~FPKL~~LD  307 (585)
T KOG3763|consen  288 DRSEYVSAIRELFPKLLRLD  307 (585)
T ss_pred             hhHHHHHHHHHhcchheeec
Confidence             1233445555666666653

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=88.25  E-value=0.29  Score=25.84  Aligned_cols=25  Identities=32%  Similarity=0.462  Sum_probs=18.3

Q ss_pred             CCcEEEeeCCCCCH-HHHHHHHHcCC
Q 021717          198 KLKVLSLRCTTLNR-DALILILDGLQ  222 (308)
Q Consensus       198 ~L~~L~L~~~~it~-~~l~~l~~~~p  222 (308)
                      +|+.|.|....+.+ ..+..++.+||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            47888888666554 46888888887

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=88.24  E-value=0.13  Score=47.50  Aligned_cols=107  Identities=19%  Similarity=0.161  Sum_probs=66.8

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCC
Q 021717          121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL  199 (308)
Q Consensus       121 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L  199 (308)
                      ..+|+.|++... .+  ..+......+++|+.|+++++.+++  +..+. .++.|+.|.+.++ +....   -...+++|
T Consensus        94 ~~~l~~l~l~~n-~i--~~i~~~l~~~~~L~~L~ls~N~I~~--i~~l~-~l~~L~~L~l~~N~i~~~~---~~~~l~~L  164 (414)
T KOG0531|consen   94 LKSLEALDLYDN-KI--EKIENLLSSLVNLQVLDLSFNKITK--LEGLS-TLTLLKELNLSGNLISDIS---GLESLKSL  164 (414)
T ss_pred             ccceeeeecccc-ch--hhcccchhhhhcchheecccccccc--ccchh-hccchhhheeccCcchhcc---CCccchhh
Confidence            466777777754 22  2233336678888899988886642  22222 2455888888776 33211   11237888


Q ss_pred             cEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcCC
Q 021717          200 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV  237 (308)
Q Consensus       200 ~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~  237 (308)
                      +.++++++.+++..-.. ...+.+|+.+.+.+......
T Consensus       165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI  201 (414)
T ss_pred             hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence            88888888776554322 46778888888887765554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=87.57  E-value=0.17  Score=49.14  Aligned_cols=24  Identities=13%  Similarity=0.131  Sum_probs=14.9

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHH
Q 021717          121 CPQLKRLVMPAWNRIKKTGICKAI  144 (308)
Q Consensus       121 ~~~L~~L~L~~~~~~~~~~l~~~~  144 (308)
                      ...|+.|.|.+|.--+..|+..+-
T Consensus       108 F~sLr~LElrg~~L~~~~GL~~lr  131 (1096)
T KOG1859|consen  108 FRSLRVLELRGCDLSTAKGLQELR  131 (1096)
T ss_pred             ccceeeEEecCcchhhhhhhHHHH
Confidence            457788888877555555544443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=87.44  E-value=0.34  Score=49.10  Aligned_cols=110  Identities=21%  Similarity=0.154  Sum_probs=61.1

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      .||.|++|-+.....--...-..++..+|.|..||+++|.-.......|+. +-+|+.|++++. +.  .+..-...+..
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL~L~~t~I~--~LP~~l~~Lk~  619 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYLDLSDTGIS--HLPSGLGNLKK  619 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhhcccccCCCcc--ccchHHHHHHh
Confidence            466777777665421011112234567788888888876433333344442 557778887765 32  11222346677


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      |.+|++..+..-. .+..+....++|++|.+..-.
T Consensus       620 L~~Lnl~~~~~l~-~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  620 LIYLNLEVTGRLE-SIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hheeccccccccc-cccchhhhcccccEEEeeccc
Confidence            8888887433111 113444557888988886543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.43  E-value=0.7  Score=41.95  Aligned_cols=38  Identities=24%  Similarity=0.311  Sum_probs=31.6

Q ss_pred             hcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          194 MYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       194 ~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      ..+.+|..|+|..+.+.  .+..++.+|.+|++|++.|..
T Consensus       502 ~nm~nL~tLDL~nNdlq--~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  502 KNMRNLTTLDLQNNDLQ--QIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             hhhhhcceeccCCCchh--hCChhhccccceeEEEecCCc
Confidence            47889999999987763  466788999999999999864

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=85.88  E-value=0.41  Score=36.92  Aligned_cols=103  Identities=15%  Similarity=0.199  Sum_probs=48.6

Q ss_pred             CcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEE
Q 021717          124 LKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVL  202 (308)
Q Consensus       124 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L  202 (308)
                      +..++|+.|.-..-......+..-..|+..+++++.+- ..-+.+....|-++.|++..+ +.+-. ..+ ..+|.|+.|
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvP-eE~-Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVP-EEL-AAMPALRSL  105 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhch-HHH-hhhHHhhhc
Confidence            55566666633322222223333444555566655321 122244444556677777655 32211 122 367777777


Q ss_pred             EeeCCCCCHHHHHHHHHcCCCCCEEeccc
Q 021717          203 SLRCTTLNRDALILILDGLQNLEVLNISH  231 (308)
Q Consensus       203 ~L~~~~it~~~l~~l~~~~p~L~~L~l~~  231 (308)
                      +++.|.+....  ..+..+.+|-.|+..+
T Consensus       106 Nl~~N~l~~~p--~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen  106 NLRFNPLNAEP--RVIAPLIKLDMLDSPE  132 (177)
T ss_pred             ccccCccccch--HHHHHHHhHHHhcCCC
Confidence            77766654321  2222244455555443

>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins

Probab=84.62  E-value=0.77  Score=32.99  Aligned_cols=25  Identities=24%  Similarity=0.349  Sum_probs=22.8

Q ss_pred             CCcCCCCHHHHHHHhcCCChHHHhh
Q 021717            9 RRWEDLDNDILVKIFQSFDIFELTS   33 (308)
Q Consensus         9 ~~~~~LP~eiL~~If~~L~~~d~~~   33 (308)
                      ..|..||.||-..|+++|+..|+..
T Consensus        70 ~~w~~LP~EIk~~Il~~L~~~dL~~   94 (97)
T PF09372_consen   70 NYWNILPIEIKYKILEYLSNKDLKK   94 (97)
T ss_pred             CchhhCCHHHHHHHHHcCCHHHHHH
Confidence            5699999999999999999998864

The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=82.66  E-value=2.1  Score=42.83  Aligned_cols=77  Identities=13%  Similarity=0.121  Sum_probs=36.6

Q ss_pred             CCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCH--HHHHHHHHcCCCC
Q 021717          148 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNR--DALILILDGLQNL  224 (308)
Q Consensus       148 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~--~~l~~l~~~~p~L  224 (308)
                      ++|+.|++++|.++. .-..+   .++|+.|+++++ +.. ....+.   +.|+.|+++++.++.  ..+..+...+|++
T Consensus       346 ~sL~~L~Ls~N~L~~-LP~~l---p~~L~~LdLs~N~Lt~-LP~~l~---~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l  417 (754)
T PRK15370        346 PELQVLDVSKNQITV-LPETL---PPTITTLDVSRNALTN-LPENLP---AALQIMQASRNNLVRLPESLPHFRGEGPQP  417 (754)
T ss_pred             CcccEEECCCCCCCc-CChhh---cCCcCEEECCCCcCCC-CCHhHH---HHHHHHhhccCCcccCchhHHHHhhcCCCc
Confidence            566777776664431 00111   246666766655 221 000111   245566666555441  2344444445666


Q ss_pred             CEEecccC
Q 021717          225 EVLNISHC  232 (308)
Q Consensus       225 ~~L~l~~C  232 (308)
                      ..|++.+.
T Consensus       418 ~~L~L~~N  425 (754)
T PRK15370        418 TRIIVEYN  425 (754)
T ss_pred             cEEEeeCC
Confidence            66666553

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=82.28  E-value=0.07  Score=42.57  Aligned_cols=101  Identities=20%  Similarity=0.183  Sum_probs=55.7

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC---CCHHHHHHHHhcCCC
Q 021717          122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP---FDLLFASTLNMYLPK  198 (308)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~---~~~~~~~~l~~~~p~  198 (308)
                      .++..|.|+.. +++.  +..-+..+.+|+.|.+.++.+. +.-.+++ ..|+|+.|++.-+   .-+.+    ..++|.
T Consensus        33 s~ITrLtLSHN-Kl~~--vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~~lprg----fgs~p~  103 (264)
T KOG0617|consen   33 SNITRLTLSHN-KLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLNILPRG----FGSFPA  103 (264)
T ss_pred             hhhhhhhcccC-ceee--cCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhhcCccc----cCCCch
Confidence            45566666654 2211  1122335568888888877543 2222333 4688888887633   11111    236888


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEeccc
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISH  231 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~  231 (308)
                      |+.|+|.+++++...+..=+-.+..|+-|.+++
T Consensus       104 levldltynnl~e~~lpgnff~m~tlralyl~d  136 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD  136 (264)
T ss_pred             hhhhhccccccccccCCcchhHHHHHHHHHhcC
Confidence            899998888777665443222334455555554

>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]

Probab=81.89  E-value=0.71  Score=39.29  Aligned_cols=53  Identities=19%  Similarity=0.288  Sum_probs=40.2

Q ss_pred             CCCcccCCCcCCCCHHHHHHHhcCCC-hHHHhhHHhHhhHHHHHhccCCCcceee
Q 021717            2 EESASTVRRWEDLDNDILVKIFQSFD-IFELTSGIAHVCSSWRSACCDPLLWKTL   55 (308)
Q Consensus         2 ~~~~~~~~~~~~LP~eiL~~If~~L~-~~d~~~~~s~VCr~Wr~~~~~p~lw~~i   55 (308)
                      ++..+.+..+.+||.|++..|+..++ .+|+.. +++|-..-..+..+..+|+.+
T Consensus       193 ~~~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s-~aqa~etl~~l~~e~~iWkkL  246 (332)
T KOG3926|consen  193 TEPDPAGLTLHDLPLECVLNILLRLSDHRDLES-LAQAWETLAKLSEERRIWKKL  246 (332)
T ss_pred             cCCCcCCCCcccchHHHHHHHHHHccCcchHHH-HHHhhHHHHHHHHHHHHHHHH
Confidence            44445567899999999999999885 688888 888776666666556677755

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=81.46  E-value=1.2  Score=20.81  Aligned_cols=12  Identities=33%  Similarity=0.457  Sum_probs=5.9

Q ss_pred             CCCCEEecccCC
Q 021717          222 QNLEVLNISHCL  233 (308)
Q Consensus       222 p~L~~L~l~~C~  233 (308)
                      ++|+.|+|++|.
T Consensus         1 ~~L~~L~l~~n~   12 (17)
T PF13504_consen    1 PNLRTLDLSNNR   12 (17)
T ss_dssp             TT-SEEEETSS-
T ss_pred             CccCEEECCCCC
Confidence            356666666665

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	308
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-17
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-05
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	5e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	7e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-05

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 79.2 bits (195), Expect = 6e-17
 Identities = 39/234 (16%), Positives = 83/234 (35%), Gaps = 14/234 (5%)

Query: 11  WEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISNYIKIPLE 70
           W+ L +++L+ IF    + EL   ++ VC  W     D  LW+TLDL+    +       
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLK-VSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRL 67

Query: 71  PYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMP 130
               V      +      ++   S   ++ +    N  +    L     +C +L+ L + 
Sbjct: 68  LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLS-NSVIEVSTLHGILSQCSKLQNLSL- 125

Query: 131 AWNRIKKTGICKAIRMWRDLESLTM---PSIANPPYLMEEIAQNCRNFRELKIMGPF--- 184
              R+        +    +L  L +      +     ++ +  +C    EL +   F   
Sbjct: 126 EGLRLSDPI-VNTLAKNSNLVRLNLSGCSGFSEFA--LQTLLSSCSRLDELNLSWCFDFT 182

Query: 185 DLLFASTLNMYLPKLKVLSLR--CTTLNRDALILILDGLQNLEVLNISHCLLID 236
           +      +      +  L+L      L +  L  ++    NL  L++S  +++ 
Sbjct: 183 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 236

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 58.4 bits (141), Expect = 1e-09
 Identities = 25/162 (15%), Positives = 54/162 (33%), Gaps = 12/162 (7%)

Query: 90  SLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRD 149
            L + RG+    +      VS   L   A+ C +L+ + +   + I    +       ++
Sbjct: 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKN 404

Query: 150 LESLTMPSIANPPYL--------MEEIAQNCRNFRELKIMGPFDLL---FASTLNMYLPK 198
           L    +  +     +        +  +   C+  R          L     S +  Y P 
Sbjct: 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN 464

Query: 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLA 240
           ++ + L     + + L+    G  NL+ L +  C   +  +A
Sbjct: 465 VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA 506

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.9 bits (124), Expect = 1e-07
 Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 6/127 (4%)

Query: 109 VSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEI 168
           +S   L   A  C  L  + +  +  ++  G  KA     +    ++      P    E 
Sbjct: 207 ISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMP----EK 262

Query: 169 AQNCRNFRELKIMGPFDL--LFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEV 226
             N    R+L  +G   +       L  +  +++ L L    L  +    ++    NLEV
Sbjct: 263 YMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322

Query: 227 LNISHCL 233
           L   + +
Sbjct: 323 LETRNVI 329

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 29/235 (12%), Positives = 70/235 (29%), Gaps = 22/235 (9%)

Query: 11  WEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISNYIKIPLE 70
                +D++ ++       +     + VC  W     D    + + +++  +        
Sbjct: 13  CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI--DSETREHVTMALCYTATPDRLSR 70

Query: 71  PYVYVHGHSDKQLTRILKISLSLSRG-SIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVM 129
            +             +  + L      ++  LI           +T  +    QLK +  
Sbjct: 71  RF-----------PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHF 119

Query: 130 PAWNRIKKTGICKAIRMWRDLESLTMPSIAN-PPYLMEEIAQNCRNFRELKIMGPF---- 184
                        A     DLE+L +   +      +  I  +CR  + L +        
Sbjct: 120 RRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEK 179

Query: 185 DLLFASTLNMYLPKLKVLSL---RCTTLNRDALILILDGLQNLEVLNISHCLLID 236
           D  +   L  +   L+VL+        ++   L  I    ++L  + +    +++
Sbjct: 180 DGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 24/159 (15%), Positives = 58/159 (36%), Gaps = 14/159 (8%)

Query: 90  SLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRD 149
              ++    R L      Y+  +++        Q+++L +  +  ++    C  I+   +
Sbjct: 261 EKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDL-LYALLETEDHCTLIQKCPN 319

Query: 150 LESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYL------------P 197
           LE L   ++     L E +AQ C+  + L+I    D          +             
Sbjct: 320 LEVLETRNVIGDRGL-EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378

Query: 198 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236
           +L+ +++  + +  ++L  I   L+NL    +      +
Sbjct: 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE 417

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 50.7 bits (122), Expect = 5e-09
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 11 WEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLD 56
          W+ L +++L+ IF    + EL   ++ VC  W     D  LW+TLD
Sbjct: 9  WDSLPDELLLGIFSCLCLPELLK-VSGVCKRWYRLASDESLWQTLD 53

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 52.6 bits (126), Expect = 6e-08
 Identities = 24/155 (15%), Positives = 54/155 (34%), Gaps = 11/155 (7%)

Query: 92  SLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLE 151
            L        +   N+ +++  L   +  CP+L+ ++     ++    +    R   ++ 
Sbjct: 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMT 400

Query: 152 SLTMPSIANPPYL----------MEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKV 201
              +  I                   I ++C++ R L + G         +  Y  K+++
Sbjct: 401 RFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEM 460

Query: 202 LSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236
           LS+     +   +  +L G  +L  L I  C   D
Sbjct: 461 LSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 8/150 (5%)

Query: 90  SLSLSRGSIRTL-IFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWR 148
               +  S+ +L I      VS   L     RCP LK L +     +    +   ++   
Sbjct: 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL--NRAVPLEKLATLLQRAP 235

Query: 149 DLESLTMPSIAN-----PPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLS 203
            LE L                +      C+  R L         +   +     +L  L+
Sbjct: 236 QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLN 295

Query: 204 LRCTTLNRDALILILDGLQNLEVLNISHCL 233
           L   T+    L+ +L     L+ L +   +
Sbjct: 296 LSYATVQSYDLVKLLCQCPKLQRLWVLDYI 325

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 43/295 (14%), Positives = 85/295 (28%), Gaps = 72/295 (24%)

Query: 14  LDNDILVKIFQSFDIFELTSGIAHVCSSWRSA-----------CCDPLLW---------- 52
              ++L  +F    + +  + ++ VC SW               C  +            
Sbjct: 9   FPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKV 68

Query: 53  KTLDLS--------MLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFH 104
           ++++L          L+ +     + P++     S   L  I    + ++   +  +   
Sbjct: 69  RSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKS 128

Query: 105 F-NL---------YVSDDQLTYTAERCPQLKRLVMPAWNRIKKT--GICKAIRMWRDLES 152
           F N            S D L   A  C  LK L +   +    +   +      +  L S
Sbjct: 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS 188

Query: 153 LTMPSIANP--PYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLR----- 205
           L +  +A+      +E +   C N + LK+     L   +TL    P+L+ L        
Sbjct: 189 LNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE 248

Query: 206 ------------------------CTTLNRDALILILDGLQNLEVLNISHCLLID 236
                                           L  +      L  LN+S+  +  
Sbjct: 249 VRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 7/165 (4%)

Query: 79  SDKQLTRILKISLSLSR----GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNR 134
           ++  L  I +   +++R            +  L   D       E C  L+RL +     
Sbjct: 385 TNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-- 442

Query: 135 IKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMG-PFDLLFASTLN 193
           +            + +E L++    +    M  +   C + R+L+I   PF         
Sbjct: 443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA 502

Query: 194 MYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVP 238
             L  ++ L +   +++  A  L+   +  L V  I      D  
Sbjct: 503 SKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSR 547

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 17/149 (11%)

Query: 91  LSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDL 150
             + R   R +       VS   +     R P+++ +              K    + D 
Sbjct: 38  YEIERWCRRKVFIGNCYAVSPATV---IRRFPKVRSVE------------LKGKPHFADF 82

Query: 151 ESLTMPSIANPPYLMEEIAQNCRNFRELKIMG-PFDLLFASTLNMYLPKLKVLSL-RCTT 208
             +           +E ++ +     E+++            +       KVL L  C  
Sbjct: 83  NLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142

Query: 209 LNRDALILILDGLQNLEVLNISHCLLIDV 237
            + D L  I    +NL+ L++    + DV
Sbjct: 143 FSTDGLAAIAATCRNLKELDLRESDVDDV 171

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 4e-07
 Identities = 50/285 (17%), Positives = 96/285 (33%), Gaps = 63/285 (22%)

Query: 1   MEESASTVRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTL--DLS 58
           + +  +T   W+ ++ D L  I +S  +  L                +P  ++ +   LS
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESS-LNVL----------------EPAEYRKMFDRLS 379

Query: 59  MLISNYIKIPLEPYVYVHGHSDKQ-----LTRILKISLSLSRGSIRTLIFHFNLYVSDDQ 113
           +   +   IP      +     K      + ++ K SL   +    T+    ++Y+    
Sbjct: 380 VFPPS-AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLE--- 434

Query: 114 LTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR 173
           L    E    L R ++  +N  K            D + L  P +    Y    I  + +
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKT----------FDSDDLIPPYLDQ--YFYSHIGHHLK 482

Query: 174 NFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233
           N    + M  F ++F   L+    + K   +R  +   +A   IL+ LQ L+        
Sbjct: 483 NIEHPERMTLFRMVF---LDFRFLEQK---IRHDSTAWNASGSILNTLQQLKFY------ 530

Query: 234 LIDVPLAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIMCQRT 278
                     K  I   D    +    +  FL  +E++ I  + T
Sbjct: 531 ----------KPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 3e-06
 Identities = 40/279 (14%), Positives = 71/279 (25%), Gaps = 74/279 (26%)

Query: 70  EPYVYVHGH--SDKQ-LTRILKISLSLSRGSIRTLIFHFNLY-VSDDQLTYTAERCPQLK 125
              V + G   S K  +       L +           F ++ ++             L+
Sbjct: 150 AKNVLIDGVLGSGKTWVA------LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 126 RLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFD 185
           +L      +I           W           +N    +  I    R   + K      
Sbjct: 204 KL----LYQIDP--------NWTSRSD----HSSNIKLRIHSIQAELRRLLKSK-PYENC 246

Query: 186 LLFASTL-NMYLPK-LKVLSLRCTTL--NRDA---------------LILILDGLQNLEV 226
           LL    L N+   K     +L C  L   R                 L      L   EV
Sbjct: 247 LL---VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 227 LNI-SHCLLIDV-----------PLAPAPKKIIKKLDRTILQKAARLRKF----LTCMED 270
            ++    L               P   +   II +  R  L      +      LT + +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLS---IIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 271 SCIMCQRTKNDEGIMRWYKYEE-GLWKDDEVLPAIVLCI 308
           S +       +    R   ++   ++     +P I+L +
Sbjct: 361 SSLNVL----EPAEYRKM-FDRLSVFPPSAHIPTILLSL 394

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 42.8 bits (100), Expect = 7e-05
 Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 11 WEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDL 57
             L  D+ + I       +L   +      W     DP+LW+   L
Sbjct: 5  LTRLPIDVQLYILSFLSPHDLCQ-LGSTNHYWNETVRDPILWRYFLL 50

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 9e-05
 Identities = 29/205 (14%), Positives = 64/205 (31%), Gaps = 26/205 (12%)

Query: 47  CDPLLWKTLDLSMLISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRTLIFHFN 106
            D ++      +     +          +       L+ +L     L+   I+       
Sbjct: 128 ADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKG------ 181

Query: 107 LYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLME 166
                + L+   +  P LK L + +                 +LE L +  +    Y  +
Sbjct: 182 ----TNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL-YVGVEDYGFD 236

Query: 167 EIAQ------NCRNFRELKIMG------PFDLLFASTLNMYLPKLKVLSLRCTTLNRDAL 214
                     +   F  LK +G         ++     +  LP+L+ + +    L  +  
Sbjct: 237 GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296

Query: 215 ILILDGLQ---NLEVLNISHCLLID 236
            L+LD +    +L+ +N+ +  L D
Sbjct: 297 RLLLDHVDKIKHLKFINMKYNYLSD 321

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	308
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.84
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.78
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.46
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.45
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.43
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.42
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.39
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.3
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.2
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.19
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.11
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.1
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.97
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.82
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.81
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.78
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.73
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.67
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.62
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.61
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.58
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.55
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.54
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.53
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.52
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.44
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.41
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.3
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.25
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.16
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.16
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.13
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.1
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.07
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.06
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.03
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.02
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.01
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.0
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.99
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.98
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.93
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.92
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.92
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.91
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.9
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.86
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	97.84
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.83
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.81
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.8
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.77
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.76
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.76
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.75
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.73
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.71
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.71
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.7
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.69
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.69
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.69
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.68
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.66
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.66
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.65
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.64
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.64
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.63
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.63
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.63
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.62
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.61
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.61
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.59
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.59
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.58
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.58
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.56
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.56
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.55
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.54
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.54
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.54
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.54
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.54
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.52
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.51
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.5
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.49
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.49
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.49
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.48
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.48
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.47
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.46
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.42
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.42
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.41
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.41
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.37
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.36
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.35
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.34
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.34
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.33
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.13
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.02
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	96.88
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.82
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	96.81
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	96.77
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	96.59
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	96.57
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	96.5
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	96.47
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	96.38
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	96.31
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.29
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	96.16
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.03
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	95.85
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	95.67
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	95.35
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	94.21
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	93.52
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	88.41
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	86.61
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	86.33
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	85.62

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.93  E-value=3.8e-24  Score=190.08  Aligned_cols=223  Identities=21%  Similarity=0.255  Sum_probs=133.4

Q ss_pred             cCCCcCCCCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCcceeeecccccc-----------cccccCCCCce--
Q 021717            7 TVRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLIS-----------NYIKIPLEPYV--   73 (308)
Q Consensus         7 ~~~~~~~LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~l~~~~~-----------~~~~~~~~~~~--   73 (308)
                      +..+|++||+|++.+||+||+.+|+.+ ++.|||+|+.++.+|.+|+++++....-           ...........  
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~-~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~   83 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLK-VSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMD   83 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHH-TTSSCHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEEC
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHH-HHHHHHHHHHHhcCchhheeeccccccCCHHHHHhhhhccceEEEcCCcccc
Confidence            467899999999999999999999999 9999999999999999999999975310           00000000000  


Q ss_pred             -------------ee-cCCChHHHH-HHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHH
Q 021717           74 -------------YV-HGHSDKQLT-RILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKT  138 (308)
Q Consensus        74 -------------~~-~~~~~~~l~-~~l~~~~~~s~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~  138 (308)
                                   .+ .....  +. ..+.. .-.....++.+.+..+ .+++.....++. +++|++|+++++..+++.
T Consensus        84 ~~~~~~~~~~~L~~L~L~~~~--l~~~~~~~-~~~~~~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~  158 (336)
T 2ast_B           84 QPLAEHFSPFRVQHMDLSNSV--IEVSTLHG-ILSQCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEF  158 (336)
T ss_dssp             SCCCSCCCCBCCCEEECTTCE--ECHHHHHH-HHTTBCCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHH
T ss_pred             ccchhhccCCCCCEEEccCCC--cCHHHHHH-HHhhCCCCCEEeCcCc-ccCHHHHHHHhc-CCCCCEEECCCCCCCCHH
Confidence                         00 00000  00 10111 1123456666666555 355555555543 666666666666556665


Q ss_pred             HHHHHHhcCCCCCEEEeCCC-CCChHHHHHHHHcCC-CCCeeEecCC---CCHHHHHHHHhcCCCCcEEEeeCCC-CCHH
Q 021717          139 GICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQNCR-NFRELKIMGP---FDLLFASTLNMYLPKLKVLSLRCTT-LNRD  212 (308)
Q Consensus       139 ~l~~~~~~~~~L~~L~l~~~-~~~~~~l~~l~~~~~-~L~~L~l~~~---~~~~~~~~l~~~~p~L~~L~L~~~~-it~~  212 (308)
                      ++...+..+++|++|++++| .+++..+..+...+| +|++|+++++   +++..+......+|+|++|+++++. +++.
T Consensus       159 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~  238 (336)
T 2ast_B          159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND  238 (336)
T ss_dssp             HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG
T ss_pred             HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH
Confidence            66666666666666666666 666555555555566 6666666654   4545555555566666666666555 5555


Q ss_pred             HHHHHHHcCCCCCEEecccCCCcC
Q 021717          213 ALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       213 ~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      ++..+ ..+++|++|++++|..++
T Consensus       239 ~~~~l-~~l~~L~~L~l~~~~~~~  261 (336)
T 2ast_B          239 CFQEF-FQLNYLQHLSLSRCYDII  261 (336)
T ss_dssp             GGGGG-GGCTTCCEEECTTCTTCC
T ss_pred             HHHHH-hCCCCCCEeeCCCCCCCC
Confidence            54433 445666666666665444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.84  E-value=5.6e-21  Score=182.14  Aligned_cols=219  Identities=17%  Similarity=0.197  Sum_probs=133.9

Q ss_pred             CCcCCCCHHHHHHHhcCCC-hHHHhhHHhHhhHHHHHhccCCCcceeeeccccccc-----ccccCCCCceeecC-----
Q 021717            9 RRWEDLDNDILVKIFQSFD-IFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISN-----YIKIPLEPYVYVHG-----   77 (308)
Q Consensus         9 ~~~~~LP~eiL~~If~~L~-~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~l~~~~~~-----~~~~~~~~~~~~~~-----   77 (308)
                      ..|++||+|||.+||+||+ .+|+.+ ++.|||+|+++.  +..|..+++......     +..++.-....+..     
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~-~s~vck~W~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~   80 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNS-VSLVCKSWYEIE--RWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFA   80 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHH-HHTSCHHHHHHH--HHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGG
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHH-HHHHHHHHHHhh--hhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchh
Confidence            4689999999999999999 999999 999999999993  345666666432000     00000000000000     


Q ss_pred             -------CChHHHHHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCC
Q 021717           78 -------HSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDL  150 (308)
Q Consensus        78 -------~~~~~l~~~l~~~~~~s~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L  150 (308)
                             ........++.. +....+.++.+.+..+. +++..+..++..+++|++|+|.+|..+++.++..+...|++|
T Consensus        81 ~~~l~~~~~~~~~~~~l~~-l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L  158 (594)
T 2p1m_B           81 DFNLVPDGWGGYVYPWIEA-MSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL  158 (594)
T ss_dssp             GGTCSCTTSCCBCHHHHHH-HHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTC
T ss_pred             hcccccccccchhhHHHHH-HHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCC
Confidence                   000001122222 22346677777777653 677777777766777777777777677777777777777777


Q ss_pred             CEEEeCCCCCC---hHHHHHHHHcCCCCCeeEecCC---CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCC
Q 021717          151 ESLTMPSIANP---PYLMEEIAQNCRNFRELKIMGP---FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNL  224 (308)
Q Consensus       151 ~~L~l~~~~~~---~~~l~~l~~~~~~L~~L~l~~~---~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L  224 (308)
                      ++|++++|.++   ...+..+...+++|++|++.++   +++..+..+...+|+|++|+++++ ....++..++..+++|
T Consensus       159 ~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L  237 (594)
T 2p1m_B          159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA-VPLEKLATLLQRAPQL  237 (594)
T ss_dssp             CEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT-SCHHHHHHHHHHCTTC
T ss_pred             CEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC-CcHHHHHHHHhcCCcc
Confidence            77777777433   2334444456777777777665   556666666667777888877754 2233466777777778


Q ss_pred             CEEecccCC
Q 021717          225 EVLNISHCL  233 (308)
Q Consensus       225 ~~L~l~~C~  233 (308)
                      ++|++++|.
T Consensus       238 ~~L~l~~~~  246 (594)
T 2p1m_B          238 EELGTGGYT  246 (594)
T ss_dssp             SEEECSBCC
T ss_pred             eEccccccc
Confidence            888777664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.78  E-value=2e-18  Score=164.49  Aligned_cols=214  Identities=15%  Similarity=0.165  Sum_probs=108.5

Q ss_pred             cCCCCHHHHHHHhcCC-ChHHHhhHHhHhhHHHHHhccCCCcceeeecccccccc-----cccCCCCceeecC-------
Q 021717           11 WEDLDNDILVKIFQSF-DIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISNY-----IKIPLEPYVYVHG-------   77 (308)
Q Consensus        11 ~~~LP~eiL~~If~~L-~~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~l~~~~~~~-----~~~~~~~~~~~~~-------   77 (308)
                      ..+||+|+|.+||+|| +.+|+.+ ++.|||+|+.+..  ..+..+.+......+     ...+.-....+..       
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~~-~s~vck~W~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~   89 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRDS-ASLVCRRWFKIDS--ETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMF   89 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHHH-HTTSCHHHHHHHH--HHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGG
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHHH-HHHHhHHHHHhhh--ccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhc
Confidence            3489999999999999 8999999 9999999999842  222333322110000     0000000000000       


Q ss_pred             -----CChHHHHHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhCCC-CcEEEcCCCCCCCHHHHHHHHhcCCCCC
Q 021717           78 -----HSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQ-LKRLVMPAWNRIKKTGICKAIRMWRDLE  151 (308)
Q Consensus        78 -----~~~~~l~~~l~~~~~~s~~~l~~l~l~~~~~~~d~~l~~l~~~~~~-L~~L~L~~~~~~~~~~l~~~~~~~~~L~  151 (308)
                           ........++.. +......++.+.+..+ .+++..+..++..+++ |++|+|.+|..+++.++..+...|++|+
T Consensus        90 ~~~~~~~~~~~~~~l~~-l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~  167 (592)
T 3ogk_B           90 NLIPENWGGYVTPWVTE-ISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIK  167 (592)
T ss_dssp             TCSCTTSCCBCHHHHHH-HHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCS
T ss_pred             ccccccccccchHHHHH-HHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCC
Confidence                 000000111111 1223455555555544 3455555555554444 6666665555455555555555566666


Q ss_pred             EEEeCCCCCC---hHHHHHHHHcCCCCCeeEecCC-C---CHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCC
Q 021717          152 SLTMPSIANP---PYLMEEIAQNCRNFRELKIMGP-F---DLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNL  224 (308)
Q Consensus       152 ~L~l~~~~~~---~~~l~~l~~~~~~L~~L~l~~~-~---~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L  224 (308)
                      +|++++|.++   ...+..+...+++|++|+++++ +   ++..+..+...+|+|++|++.++.++.  +...+..+++|
T Consensus       168 ~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--l~~~~~~~~~L  245 (592)
T 3ogk_B          168 TLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE--LVGFFKAAANL  245 (592)
T ss_dssp             EEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG--GHHHHHHCTTC
T ss_pred             EEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH--HHHHHhhhhHH
Confidence            6666555332   1224444445566666665543 2   244444445555666666665544432  33445555666


Q ss_pred             CEEeccc
Q 021717          225 EVLNISH  231 (308)
Q Consensus       225 ~~L~l~~  231 (308)
                      ++|++++
T Consensus       246 ~~L~l~~  252 (592)
T 3ogk_B          246 EEFCGGS  252 (592)
T ss_dssp             CEEEECB
T ss_pred             Hhhcccc
Confidence            6666654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.46  E-value=1.8e-12  Score=123.27  Aligned_cols=143  Identities=15%  Similarity=0.204  Sum_probs=99.3

Q ss_pred             HhcCCCccEEEccC----------CCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeC----C
Q 021717           92 SLSRGSIRTLIFHF----------NLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMP----S  157 (308)
Q Consensus        92 ~~s~~~l~~l~l~~----------~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~----~  157 (308)
                      ...++.++.+.+..          +..+++..+..+...|++|++|++ .+..+++.++..+...+++|++|+++    .
T Consensus       338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~  416 (592)
T 3ogk_B          338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDRE  416 (592)
T ss_dssp             HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCC
T ss_pred             HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCC
Confidence            34467788888873          667778777777777888888888 45577777777776677777777775    2


Q ss_pred             CCCCh----HHHHHHHHcCCCCCeeEecC---CCCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecc
Q 021717          158 IANPP----YLMEEIAQNCRNFRELKIMG---PFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNIS  230 (308)
Q Consensus       158 ~~~~~----~~l~~l~~~~~~L~~L~l~~---~~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~  230 (308)
                      +.+++    +.+..+...|++|++|+++.   .+++..+..+...+|+|++|+++++.+++.++..++.+|++|++|+|+
T Consensus       417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~  496 (592)
T 3ogk_B          417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR  496 (592)
T ss_dssp             SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEE
T ss_pred             ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeecc
Confidence            23443    45666666677777777743   256666666666677777777777777777777777777777777777


Q ss_pred             cCCCcC
Q 021717          231 HCLLID  236 (308)
Q Consensus       231 ~C~~i~  236 (308)
                      +|. ++
T Consensus       497 ~n~-l~  501 (592)
T 3ogk_B          497 GCC-FS  501 (592)
T ss_dssp             SCC-CB
T ss_pred             CCC-Cc
Confidence            776 44

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.45  E-value=4.5e-14  Score=90.00  Aligned_cols=50  Identities=32%  Similarity=0.684  Sum_probs=40.3

Q ss_pred             ccCCCcCCCCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCcceeee
Q 021717            6 STVRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLD   56 (308)
Q Consensus         6 ~~~~~~~~LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~   56 (308)
                      .+...|.+||+||+.+||+||+.+|+.+ +++|||+|+.++.++.+|+.+|
T Consensus         4 ~~~~~~~~LP~eil~~I~~~L~~~dl~~-~~~Vck~w~~~~~~~~lW~~ld   53 (53)
T 1fs1_A            4 FPGVSWDSLPDELLLGIFSCLCLPELLK-VSGVCKRWYRLASDESLWQTLD   53 (53)
T ss_dssp             -----CCSSCHHHHHHHHTTSCGGGHHH-HHTTCHHHHHHHTCGGGC----
T ss_pred             CCCCCHHHCCHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhCChHHHHhcC
Confidence            3456799999999999999999999999 9999999999999999999875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.43  E-value=2.1e-12  Score=114.18  Aligned_cols=136  Identities=14%  Similarity=0.156  Sum_probs=70.4

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCC-CCCEEEeCCC--CCChHHHHHHHHc
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWR-DLESLTMPSI--ANPPYLMEEIAQN  171 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~--~~~~~~l~~l~~~  171 (308)
                      ...++.+.+..+..+++..+..+...+++|++|+++++..+++.++...+..++ +|++|++++|  .+++..+..+...
T Consensus       141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~  220 (336)
T 2ast_B          141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR  220 (336)
T ss_dssp             CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence            445555555555455555555555555555555555554555555555555555 5555555555  3444444444445


Q ss_pred             CCCCCeeEecCC--CCHHHHHHHHhcCCCCcEEEeeCC-CCCHHHHHHHHHcCCCCCEEecccC
Q 021717          172 CRNFRELKIMGP--FDLLFASTLNMYLPKLKVLSLRCT-TLNRDALILILDGLQNLEVLNISHC  232 (308)
Q Consensus       172 ~~~L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~~~-~it~~~l~~l~~~~p~L~~L~l~~C  232 (308)
                      +|+|++|+++++  +++.....+ ..+++|++|+++++ .+++.++..+ ..+|+|++|++++|
T Consensus       221 ~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~  282 (336)
T 2ast_B          221 CPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI  282 (336)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS
T ss_pred             CCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHHHHH-hcCCCCCEEeccCc
Confidence            555555555554  233333322 24555555555533 4444444222 34555555555555

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.42  E-value=2.8e-12  Score=121.88  Aligned_cols=140  Identities=16%  Similarity=0.299  Sum_probs=85.0

Q ss_pred             cCCCccEEEc--------cCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeC--C---C-C
Q 021717           94 SRGSIRTLIF--------HFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMP--S---I-A  159 (308)
Q Consensus        94 s~~~l~~l~l--------~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~--~---~-~  159 (308)
                      .+..++.+.+        ..+..+++..+..++..+++|+.|.+ .+..+++.++..+...+++|++|+++  +   | .
T Consensus       336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~  414 (594)
T 2p1m_B          336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY  414 (594)
T ss_dssp             HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred             hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence            4566777766        33455666666666666666666644 34456666666666666666666666  2   2 3


Q ss_pred             CC----hHHHHHHHHcCCCCCeeEecCCCCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCC
Q 021717          160 NP----PYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  234 (308)
Q Consensus       160 ~~----~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~  234 (308)
                      ++    +..+..+...|++|++|++++.+++..+..+...+++|+.|+|+++.+++.++..+..+||+|++|+|++|..
T Consensus       415 l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          415 LTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             TTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             ccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence            44    4555555556666666666555566555555555666666666666666666666555566666666666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.39  E-value=6.2e-13  Score=105.87  Aligned_cols=87  Identities=8%  Similarity=0.141  Sum_probs=60.4

Q ss_pred             CCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC--CCHHHHHHHHh---cCCCCcEEEee-CCCCCHHHHHHHHHcCC
Q 021717          149 DLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP--FDLLFASTLNM---YLPKLKVLSLR-CTTLNRDALILILDGLQ  222 (308)
Q Consensus       149 ~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~~~l~~---~~p~L~~L~L~-~~~it~~~l~~l~~~~p  222 (308)
                      .|++|++++|.+++..+..+. .|++|++|+|++|  ++|.++..+..   .+++|++|+|+ |..|||.++..+. .||
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~  139 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFR  139 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GCT
T ss_pred             eEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cCC
Confidence            466666666666666666663 5677777777666  66777666664   24678888887 4568888887764 578


Q ss_pred             CCCEEecccCCCcCC
Q 021717          223 NLEVLNISHCLLIDV  237 (308)
Q Consensus       223 ~L~~L~l~~C~~i~~  237 (308)
                      +|++|+|++|..+|+
T Consensus       140 ~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TCCEEEEESCTTCCC
T ss_pred             CCCEEECCCCCCCCc
Confidence            888888888888875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.30  E-value=3.2e-12  Score=101.73  Aligned_cols=102  Identities=15%  Similarity=0.090  Sum_probs=86.3

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCC-CCChHHHHHHHHc---CCCCCeeEecCC--CCHHHHHHHHhc
Q 021717          122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQN---CRNFRELKIMGP--FDLLFASTLNMY  195 (308)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~l~~l~~~---~~~L~~L~l~~~--~~~~~~~~l~~~  195 (308)
                      .+|+.|++++|. +++.++..+ ..|++|++|+|++| .+++..+..++..   |++|++|++++|  ++|.++..+. .
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~  137 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-H  137 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-G
T ss_pred             ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-c
Confidence            469999999995 999988765 68999999999999 6999999999873   678999999987  8999998886 7


Q ss_pred             CCCCcEEEee-CCCCCHHHH--HHHHHcCCCCCE
Q 021717          196 LPKLKVLSLR-CTTLNRDAL--ILILDGLQNLEV  226 (308)
Q Consensus       196 ~p~L~~L~L~-~~~it~~~l--~~l~~~~p~L~~  226 (308)
                      +|+|++|+|+ |..+|+.++  ..+-+..|+++.
T Consensus       138 ~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V  171 (176)
T 3e4g_A          138 FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL  171 (176)
T ss_dssp             CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred             CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence            9999999998 677998774  455566888763

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.20  E-value=9.6e-10  Score=88.86  Aligned_cols=123  Identities=11%  Similarity=0.084  Sum_probs=99.0

Q ss_pred             HHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHH---HhcCCCCCEEEeCCCCCChHHHHHHHH---cCCCCCeeEecCC-
Q 021717          111 DDQLTYTAERCPQLKRLVMPAWNRIKKTGICKA---IRMWRDLESLTMPSIANPPYLMEEIAQ---NCRNFRELKIMGP-  183 (308)
Q Consensus       111 d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~l~~~~~~~~~l~~l~~---~~~~L~~L~l~~~-  183 (308)
                      .+.+..+...+++|++|+|+++..+++.++..+   +...+.|++|+|++|.++++....++.   ..+.|++|+++++ 
T Consensus        25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            445666777889999999998767888775554   456789999999999999887766654   4578999999987 


Q ss_pred             CCHHHHHHHHh---cCCCCcEEEe--eCCCCCHHHHHHH---HHcCCCCCEEecccCC
Q 021717          184 FDLLFASTLNM---YLPKLKVLSL--RCTTLNRDALILI---LDGLQNLEVLNISHCL  233 (308)
Q Consensus       184 ~~~~~~~~l~~---~~p~L~~L~L--~~~~it~~~l~~l---~~~~p~L~~L~l~~C~  233 (308)
                      +++.++..++.   ..++|++|+|  +++.+++++...+   +..+++|++|++++|.
T Consensus       105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            89988777764   5679999999  8899999985544   4558999999999876

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.19  E-value=4.9e-10  Score=100.61  Aligned_cols=144  Identities=9%  Similarity=0.005  Sum_probs=114.2

Q ss_pred             HHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHh----cCCCCCEEEeCCCCCChH
Q 021717           88 KISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIR----MWRDLESLTMPSIANPPY  163 (308)
Q Consensus        88 ~~~~~~s~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~----~~~~L~~L~l~~~~~~~~  163 (308)
                      ...+......++.+.++.+ .+++..+..++...++|+.|+|+++ .+++.+...+..    .+++|++|++++|.+++.
T Consensus        93 ~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~  170 (372)
T 3un9_A           93 AAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAA  170 (372)
T ss_dssp             HHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHH
T ss_pred             HHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChH
Confidence            3334445578999999876 5788888888888889999999988 788877655543    468999999999998887


Q ss_pred             HHHHHH---HcCCCCCeeEecCC-CCHHHHHHHH---hcCCCCcEEEeeCCCCCHHHHHHHH---HcCCCCCEEecccCC
Q 021717          164 LMEEIA---QNCRNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTTLNRDALILIL---DGLQNLEVLNISHCL  233 (308)
Q Consensus       164 ~l~~l~---~~~~~L~~L~l~~~-~~~~~~~~l~---~~~p~L~~L~L~~~~it~~~l~~l~---~~~p~L~~L~l~~C~  233 (308)
                      ....++   ..+++|++|+++++ +++.++..++   ...++|+.|+|++|.+++.+...+.   ..+++|++|+|++|.
T Consensus       171 ~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          171 GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            766664   45789999999988 7777765554   4678999999999999998866654   457999999999886

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.11  E-value=1.2e-09  Score=98.30  Aligned_cols=113  Identities=17%  Similarity=0.158  Sum_probs=50.3

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHH----HHhcCCCCCEEEeCCCCCChHHHHHH---HHcCCCCCeeEecCC-CCHHHHHH
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICK----AIRMWRDLESLTMPSIANPPYLMEEI---AQNCRNFRELKIMGP-FDLLFAST  191 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~----~~~~~~~L~~L~l~~~~~~~~~l~~l---~~~~~~L~~L~l~~~-~~~~~~~~  191 (308)
                      .+++|+.|+++++ .+++.++..    .+..+++|+.|++++|.+++.....+   ...+++|++|+++++ +++.++..
T Consensus       185 ~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  263 (386)
T 2ca6_A          185 SHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  263 (386)
T ss_dssp             HCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence            4455555555544 444444222    22244555555555554443222222   123455555555544 44443333


Q ss_pred             HHhc-----CCCCcEEEeeCCCCCHHHHHHHH----HcCCCCCEEecccCC
Q 021717          192 LNMY-----LPKLKVLSLRCTTLNRDALILIL----DGLQNLEVLNISHCL  233 (308)
Q Consensus       192 l~~~-----~p~L~~L~L~~~~it~~~l~~l~----~~~p~L~~L~l~~C~  233 (308)
                      +...     +++|++|+|+++.+++.++..+.    ..+|+|++|++++|.
T Consensus       264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            3221     45555555555555554322221    234555555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.10  E-value=1.1e-09  Score=98.42  Aligned_cols=138  Identities=16%  Similarity=0.137  Sum_probs=112.4

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhh----CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHH
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAER----CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQ  170 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~----~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~  170 (308)
                      ...++.+.+..+. +++.....++..    +++|++|+|+++ .+++.++..+...+++|++|++++|.+++.....++.
T Consensus        71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~  148 (372)
T 3un9_A           71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD  148 (372)
T ss_dssp             HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred             HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence            4568899998764 677665555443    469999999988 7889888888888899999999999999888777764


Q ss_pred             ----cCCCCCeeEecCC-CCHHHHHHHH---hcCCCCcEEEeeCCCCCHHHHHHHH---HcCCCCCEEecccCCC
Q 021717          171 ----NCRNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTTLNRDALILIL---DGLQNLEVLNISHCLL  234 (308)
Q Consensus       171 ----~~~~L~~L~l~~~-~~~~~~~~l~---~~~p~L~~L~L~~~~it~~~l~~l~---~~~p~L~~L~l~~C~~  234 (308)
                          .+++|++|+++++ +++.++..++   ..+++|++|+|++|.+++.++..+.   ..+++|++|+|++|..
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA  223 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred             HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence                3689999999998 7776665553   5789999999999999998876655   4578999999999863

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.06  E-value=1.3e-08  Score=91.55  Aligned_cols=141  Identities=19%  Similarity=0.232  Sum_probs=108.4

Q ss_pred             cCCCccEEEccCCCCCCHHHHHHHHh---hC---------CCCcEEEcCCCCCCCHHHHH---HHHhcCCCCCEEEeCCC
Q 021717           94 SRGSIRTLIFHFNLYVSDDQLTYTAE---RC---------PQLKRLVMPAWNRIKKTGIC---KAIRMWRDLESLTMPSI  158 (308)
Q Consensus        94 s~~~l~~l~l~~~~~~~d~~l~~l~~---~~---------~~L~~L~L~~~~~~~~~~l~---~~~~~~~~L~~L~l~~~  158 (308)
                      ....++.+.+..+. +++.....++.   .+         ++|+.|+++++ .+++.++.   ..+..+++|++|++++|
T Consensus       120 ~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n  197 (386)
T 2ca6_A          120 KHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQN  197 (386)
T ss_dssp             HCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             hCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCCcCEEECcCC
Confidence            36789999998875 56555444433   33         89999999988 56544444   56679999999999999


Q ss_pred             CCChHHHHHHHH----cCCCCCeeEecCC-CCHHHHHHH---HhcCCCCcEEEeeCCCCCHHHHHHHHHc-----CCCCC
Q 021717          159 ANPPYLMEEIAQ----NCRNFRELKIMGP-FDLLFASTL---NMYLPKLKVLSLRCTTLNRDALILILDG-----LQNLE  225 (308)
Q Consensus       159 ~~~~~~l~~l~~----~~~~L~~L~l~~~-~~~~~~~~l---~~~~p~L~~L~L~~~~it~~~l~~l~~~-----~p~L~  225 (308)
                      .+++..+..+..    .+++|+.|+++++ +++.++..+   ...+++|++|+|+++.+++.+...+...     +++|+
T Consensus       198 ~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~  277 (386)
T 2ca6_A          198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ  277 (386)
T ss_dssp             CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCC
T ss_pred             CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeE
Confidence            999877555544    7899999999988 665544433   4688999999999999999877655542     89999


Q ss_pred             EEecccCCCcC
Q 021717          226 VLNISHCLLID  236 (308)
Q Consensus       226 ~L~l~~C~~i~  236 (308)
                      +|+|++|..-+
T Consensus       278 ~L~L~~n~i~~  288 (386)
T 2ca6_A          278 TLRLQYNEIEL  288 (386)
T ss_dssp             EEECCSSCCBH
T ss_pred             EEECcCCcCCH
Confidence            99999986433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.00  E-value=4.8e-09  Score=96.45  Aligned_cols=137  Identities=11%  Similarity=0.094  Sum_probs=101.9

Q ss_pred             CCCccEEEccCCCCCCHHHHH---HHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCC----CCCEEEeCCCCCChHH---
Q 021717           95 RGSIRTLIFHFNLYVSDDQLT---YTAERCPQLKRLVMPAWNRIKKTGICKAIRMWR----DLESLTMPSIANPPYL---  164 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~---~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~----~L~~L~l~~~~~~~~~---  164 (308)
                      .+.++.+.+..+. +++....   .....+++|++|+++++ .+++.++..+...++    +|++|++++|.+++..   
T Consensus        27 ~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~  104 (461)
T 1z7x_W           27 LQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  104 (461)
T ss_dssp             HTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             cCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence            4578889888765 5665433   33455799999999986 677777777777776    7999999999887644   


Q ss_pred             HHHHHHcCCCCCeeEecCC-CCHHHHHHHHhc----CCCCcEEEeeCCCCCHHHH---HHHHHcCCCCCEEecccCC
Q 021717          165 MEEIAQNCRNFRELKIMGP-FDLLFASTLNMY----LPKLKVLSLRCTTLNRDAL---ILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       165 l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~----~p~L~~L~L~~~~it~~~l---~~l~~~~p~L~~L~l~~C~  233 (308)
                      +......+++|++|+++++ +++.++..+...    .++|++|+++++.+++.+.   ...+..+++|++|++++|.
T Consensus       105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  181 (461)
T 1z7x_W          105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND  181 (461)
T ss_dssp             HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence            3333346889999999887 666666655543    5679999999888887553   4455668999999999887

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.97  E-value=9.2e-09  Score=94.54  Aligned_cols=111  Identities=17%  Similarity=0.196  Sum_probs=49.8

Q ss_pred             CCCCcEEEcCCCCCCCHHH---HHHHHhcCCCCCEEEeCCCCCChHHHHHHHHc----CCCCCeeEecCC-CCHHH---H
Q 021717          121 CPQLKRLVMPAWNRIKKTG---ICKAIRMWRDLESLTMPSIANPPYLMEEIAQN----CRNFRELKIMGP-FDLLF---A  189 (308)
Q Consensus       121 ~~~L~~L~L~~~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~----~~~L~~L~l~~~-~~~~~---~  189 (308)
                      +++|+.|+++++ .+++.+   +...+..+++|++|+++++.+++.....++..    .++|++|+++++ +++.+   +
T Consensus       255 ~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  333 (461)
T 1z7x_W          255 SSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF  333 (461)
T ss_dssp             TCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH
Confidence            444555555544 344433   22333345555555555554444433333321    134444444443 22221   1


Q ss_pred             HHHHhcCCCCcEEEeeCCCCCHHHHHHHHHc----CCCCCEEecccC
Q 021717          190 STLNMYLPKLKVLSLRCTTLNRDALILILDG----LQNLEVLNISHC  232 (308)
Q Consensus       190 ~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~----~p~L~~L~l~~C  232 (308)
                      ......+++|++|+++++.+++.++..+...    +++|++|++++|
T Consensus       334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  380 (461)
T 1z7x_W          334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC  380 (461)
T ss_dssp             HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence            1222344555555555555555554444332    445555555555

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.82  E-value=1.5e-07  Score=75.75  Aligned_cols=128  Identities=13%  Similarity=0.052  Sum_probs=100.3

Q ss_pred             HHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHh---hCCCCcEEEcCCCCCCCHHHHHH---HHhcCCCCCEEEeCC
Q 021717           84 TRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAE---RCPQLKRLVMPAWNRIKKTGICK---AIRMWRDLESLTMPS  157 (308)
Q Consensus        84 ~~~l~~~~~~s~~~l~~l~l~~~~~~~d~~l~~l~~---~~~~L~~L~L~~~~~~~~~~l~~---~~~~~~~L~~L~l~~  157 (308)
                      .+.+..++ .....++.+.+..+..+++.....++.   .+++|++|+|+++ .+++.+...   .+...+.|++|+|++
T Consensus        25 ~~~l~~~l-~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~  102 (185)
T 1io0_A           25 EETLKRIQ-NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES  102 (185)
T ss_dssp             HHHHHHHH-TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred             HHHHHHHH-hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC
Confidence            33444333 347789999998775788887776654   4789999999988 688877544   455678999999999


Q ss_pred             CCCChHHHHHHHH---cCCCCCeeEe--cCC-CCHHHHHHHH---hcCCCCcEEEeeCCCCCHHH
Q 021717          158 IANPPYLMEEIAQ---NCRNFRELKI--MGP-FDLLFASTLN---MYLPKLKVLSLRCTTLNRDA  213 (308)
Q Consensus       158 ~~~~~~~l~~l~~---~~~~L~~L~l--~~~-~~~~~~~~l~---~~~p~L~~L~L~~~~it~~~  213 (308)
                      |.++++....++.   .++.|++|++  .++ +++.++..++   ...++|++|+|+++.+++.+
T Consensus       103 N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~  167 (185)
T 1io0_A          103 NFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL  167 (185)
T ss_dssp             SCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence            9999998877765   4578999999  666 8888766554   46789999999999998876

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.81  E-value=1.6e-09  Score=83.99  Aligned_cols=107  Identities=18%  Similarity=0.143  Sum_probs=54.9

Q ss_pred             hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCC
Q 021717          119 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLP  197 (308)
Q Consensus       119 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p  197 (308)
                      ..+++|+.|+++++ .++..   ..+..+++|+.|+++++.++.. +......+++|+.|+++++ +++.........++
T Consensus        39 ~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~  113 (149)
T 2je0_A           39 DEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLE  113 (149)
T ss_dssp             TTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCT
T ss_pred             hhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCC
Confidence            34566666666655 33221   3345566666666666655432 2223334566666666655 43322222234566


Q ss_pred             CCcEEEeeCCCCCHHHH--HHHHHcCCCCCEEecc
Q 021717          198 KLKVLSLRCTTLNRDAL--ILILDGLQNLEVLNIS  230 (308)
Q Consensus       198 ~L~~L~L~~~~it~~~l--~~l~~~~p~L~~L~l~  230 (308)
                      +|++|+++++.++...-  ...+..+|+|+.|+++
T Consensus       114 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          114 NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            66666666655543221  1344556666666654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.78  E-value=2.5e-07  Score=82.48  Aligned_cols=39  Identities=8%  Similarity=0.042  Sum_probs=17.0

Q ss_pred             CCCcEEEcCCCCCCC---HHHHHHHHhcC-CCCCEEEeCCCCCC
Q 021717          122 PQLKRLVMPAWNRIK---KTGICKAIRMW-RDLESLTMPSIANP  161 (308)
Q Consensus       122 ~~L~~L~L~~~~~~~---~~~l~~~~~~~-~~L~~L~l~~~~~~  161 (308)
                      ++|++|+|+++. ++   ...+...+..+ ++|++|++++|.++
T Consensus        80 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  122 (362)
T 3goz_A           80 ANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFS  122 (362)
T ss_dssp             TTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             CCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence            455555555442 22   22233333333 45555555555433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.74  E-value=2.6e-09  Score=82.83  Aligned_cols=111  Identities=18%  Similarity=0.225  Sum_probs=83.1

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCC
Q 021717          121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL  199 (308)
Q Consensus       121 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L  199 (308)
                      .++|+.|+++++ .+++..+...+..+++|+.|+++++.++..  .. ...+++|+.|+++++ ++.. +......+++|
T Consensus        16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L   90 (149)
T 2je0_A           16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI--AN-LPKLNKLKKLELSDNRVSGG-LEVLAEKCPNL   90 (149)
T ss_dssp             GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TT-CCCCTTCCEEECCSSCCCSC-THHHHHHCTTC
T ss_pred             CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc--hh-hhcCCCCCEEECCCCcccch-HHHHhhhCCCC
Confidence            467999999988 444223344557889999999999977644  33 335899999999987 4432 23344579999


Q ss_pred             cEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          200 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       200 ~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      ++|+++++.+++......+..+++|++|++++|...+
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence            9999999999875544556789999999999985433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.73  E-value=5.7e-10  Score=88.47  Aligned_cols=138  Identities=14%  Similarity=0.074  Sum_probs=94.6

Q ss_pred             cCCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCC
Q 021717           94 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR  173 (308)
Q Consensus        94 s~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~  173 (308)
                      ....++.+.+..+. +++..+......+++|+.|+++++. ++..   ..+..+++|+.|++++|.+... +..+...++
T Consensus        22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~   95 (168)
T 2ell_A           22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRIFGG-LDMLAEKLP   95 (168)
T ss_dssp             CTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCT
T ss_pred             CcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcCchH-HHHHHhhCC
Confidence            34678888887764 2211222223467899999999874 4432   4567889999999999976643 334444689


Q ss_pred             CCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHH--HHHHHcCCCCCEEecccCCCcCC
Q 021717          174 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDAL--ILILDGLQNLEVLNISHCLLIDV  237 (308)
Q Consensus       174 ~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l--~~l~~~~p~L~~L~l~~C~~i~~  237 (308)
                      +|+.|+++++ +++.........+++|++|+++++.++....  ...+..+|+|++|++++|.....
T Consensus        96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A           96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            9999999887 4432111234578999999999887764332  24667899999999999875543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.67  E-value=5e-08  Score=87.07  Aligned_cols=135  Identities=16%  Similarity=0.179  Sum_probs=92.1

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHh-cCCCCCEEEeCCC---CCChH---HHHH
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIR-MWRDLESLTMPSI---ANPPY---LMEE  167 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~---~~~~~---~l~~  167 (308)
                      .+.++.|.+.++....   +..+  ..++|++|+|..+ .+++.++..+.. .+|+|++|+|+.+   ...+.   .+..
T Consensus       171 ~P~L~~L~L~g~~~l~---l~~~--~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~  244 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNLS---IGKK--PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP  244 (362)
T ss_dssp             CTTCCEEEEECCBTCB---CCSC--BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred             CCCCcEEEEeCCCCce---eccc--cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence            5677888776552211   1111  2678888888765 577777776664 7899999998642   11111   1111


Q ss_pred             HH--HcCCCCCeeEecCC-CCHHHHHHHHh--cCCCCcEEEeeCCCCCHHHHHHHHH---cCCCCCEEecccCCCcC
Q 021717          168 IA--QNCRNFRELKIMGP-FDLLFASTLNM--YLPKLKVLSLRCTTLNRDALILILD---GLQNLEVLNISHCLLID  236 (308)
Q Consensus       168 l~--~~~~~L~~L~l~~~-~~~~~~~~l~~--~~p~L~~L~L~~~~it~~~l~~l~~---~~p~L~~L~l~~C~~i~  236 (308)
                      +.  ..+|+|+.|.+..+ +++.....++.  .+|+|++|+|+++.+++.+...+..   .+++|+.|++++|. ++
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~  320 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY-LS  320 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CC
T ss_pred             HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc-CC
Confidence            11  24789999999776 66666555553  5889999999999999998877764   47999999999885 55

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.62  E-value=2.1e-07  Score=83.04  Aligned_cols=140  Identities=13%  Similarity=0.077  Sum_probs=95.8

Q ss_pred             CCCccEEEccCCCCCCH---HHHHHHHhhCC-CCcEEEcCCCCCCCH---HHHHHHHhcC-CCCCEEEeCCCCCChHHHH
Q 021717           95 RGSIRTLIFHFNLYVSD---DQLTYTAERCP-QLKRLVMPAWNRIKK---TGICKAIRMW-RDLESLTMPSIANPPYLME  166 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d---~~l~~l~~~~~-~L~~L~L~~~~~~~~---~~l~~~~~~~-~~L~~L~l~~~~~~~~~l~  166 (308)
                      ...++.+.++.+. +++   ..+......++ +|++|+|+++ .+++   ..+...+... ++|++|++++|.+++....
T Consensus        21 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~   98 (362)
T 3goz_A           21 PHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD   98 (362)
T ss_dssp             CTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             CCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence            4559999998765 333   23333344577 8999999988 4543   4455555555 9999999999976544333


Q ss_pred             ---HHHHcC-CCCCeeEecCC-CCHH---HHHHHHhc-CCCCcEEEeeCCCCCHHHHHHH---HHcCC-CCCEEecccCC
Q 021717          167 ---EIAQNC-RNFRELKIMGP-FDLL---FASTLNMY-LPKLKVLSLRCTTLNRDALILI---LDGLQ-NLEVLNISHCL  233 (308)
Q Consensus       167 ---~l~~~~-~~L~~L~l~~~-~~~~---~~~~l~~~-~p~L~~L~L~~~~it~~~l~~l---~~~~p-~L~~L~l~~C~  233 (308)
                         .....+ ++|++|+++++ +++.   .+...... .++|++|+|+++.+++.+...+   +...+ +|++|++++|.
T Consensus        99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~  178 (362)
T 3goz_A           99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN  178 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence               333344 89999999987 4433   33333334 4699999999999886554444   44565 99999999996


Q ss_pred             CcC
Q 021717          234 LID  236 (308)
Q Consensus       234 ~i~  236 (308)
                      ..+
T Consensus       179 l~~  181 (362)
T 3goz_A          179 LAS  181 (362)
T ss_dssp             GGG
T ss_pred             Cch
Confidence            444

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.61  E-value=4.2e-09  Score=89.40  Aligned_cols=49  Identities=20%  Similarity=0.409  Sum_probs=45.0

Q ss_pred             CcCCCCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCcceeeeccc
Q 021717           10 RWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSM   59 (308)
Q Consensus        10 ~~~~LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~l~~   59 (308)
                      .|++||+||+.+||+||+.+|+++ +++|||+||.++.++.||+.+-.+.
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~-l~~vcr~Wr~la~D~~LWr~~l~rd   52 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQ-LGSTNHYWNETVRDPILWRYFLLRD   52 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHH-HHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHhccchHHHHHHhcc
Confidence            378899999999999999999999 9999999999999999999876543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.58  E-value=1.7e-06  Score=69.98  Aligned_cols=122  Identities=13%  Similarity=0.164  Sum_probs=94.7

Q ss_pred             HHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHH---hcCCCCCEEEeCCCCCChHHHHHHHH---cCCCCCeeEecCC-
Q 021717          111 DDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAI---RMWRDLESLTMPSIANPPYLMEEIAQ---NCRNFRELKIMGP-  183 (308)
Q Consensus       111 d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~---~~~~~L~~L~l~~~~~~~~~l~~l~~---~~~~L~~L~l~~~-  183 (308)
                      ++.+..+....+.|++|+|+....+.+.+...++   ..-..|++|+|++|.+++....+|+.   ..+.|++|+|+.+ 
T Consensus        30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~  109 (197)
T 1pgv_A           30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF  109 (197)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence            4567777777889999999876578887755544   45568999999999999887766664   4578999999887 


Q ss_pred             CCHHHHHHHHhcC---CCCcEEEeeC--C-CCCHHH---HHHHHHcCCCCCEEecccC
Q 021717          184 FDLLFASTLNMYL---PKLKVLSLRC--T-TLNRDA---LILILDGLQNLEVLNISHC  232 (308)
Q Consensus       184 ~~~~~~~~l~~~~---p~L~~L~L~~--~-~it~~~---l~~l~~~~p~L~~L~l~~C  232 (308)
                      +++.++.++++.+   ..|++|+|++  + .+++.+   +...++.-+.|+.|+++.+
T Consensus       110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            9999988887654   4799999984  3 678876   4555667899999999754

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.55  E-value=2.2e-08  Score=81.41  Aligned_cols=106  Identities=19%  Similarity=0.191  Sum_probs=60.9

Q ss_pred             hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCC
Q 021717          119 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLP  197 (308)
Q Consensus       119 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p  197 (308)
                      ..+++|+.|+++++ .+++.   ..+..+++|++|+++++.+++.....+. .+++|+.|+++++ +++.....+ ..++
T Consensus        63 ~~l~~L~~L~l~~n-~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~~l-~~l~  136 (197)
T 4ezg_A           63 EYAHNIKDLTINNI-HATNY---NPISGLSNLERLRIMGKDVTSDKIPNLS-GLTSLTLLDISHSAHDDSILTKI-NTLP  136 (197)
T ss_dssp             GGCTTCSEEEEESC-CCSCC---GGGTTCTTCCEEEEECTTCBGGGSCCCT-TCTTCCEEECCSSBCBGGGHHHH-TTCS
T ss_pred             hcCCCCCEEEccCC-CCCcc---hhhhcCCCCCEEEeECCccCcccChhhc-CCCCCCEEEecCCccCcHhHHHH-hhCC
Confidence            34667777777766 33321   1345567777777777665543333333 3667777777665 443333333 3667


Q ss_pred             CCcEEEeeCCC-CCHHHHHHHHHcCCCCCEEecccCC
Q 021717          198 KLKVLSLRCTT-LNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       198 ~L~~L~L~~~~-it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      +|++|+++++. +++-.   .+..+++|+.|++++|.
T Consensus       137 ~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~  170 (197)
T 4ezg_A          137 KVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDG  170 (197)
T ss_dssp             SCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBC
T ss_pred             CCCEEEccCCCCccccH---hhcCCCCCCEEECCCCC
Confidence            77777777665 55432   24556777777777665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.54  E-value=4.2e-07  Score=81.06  Aligned_cols=135  Identities=13%  Similarity=0.099  Sum_probs=100.6

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHh-hCCCCcEEEcCCCCC--CC---HHHHHHHH--hcCCCCCEEEeCCCCCChHHHH
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAE-RCPQLKRLVMPAWNR--IK---KTGICKAI--RMWRDLESLTMPSIANPPYLME  166 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~-~~~~L~~L~L~~~~~--~~---~~~l~~~~--~~~~~L~~L~l~~~~~~~~~l~  166 (308)
                      ..+++.|.+..+ .++++.+..++. .+|+|++|+|.....  ..   ...+...+  ..+|+|+.|++.+|.+++....
T Consensus       192 ~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~  270 (362)
T 2ra8_A          192 RPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE  270 (362)
T ss_dssp             CTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred             CCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence            467889998754 578888888875 689999999863211  11   11122222  3589999999999988877766


Q ss_pred             HHHH--cCCCCCeeEecCC-CCHHHHHHHH---hcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccC
Q 021717          167 EIAQ--NCRNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHC  232 (308)
Q Consensus       167 ~l~~--~~~~L~~L~l~~~-~~~~~~~~l~---~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C  232 (308)
                      .++.  .+|+|++|+++.+ +++.++.++.   +.+++|+.|+|+.+.+++.++..+.+.+  ...++++.-
T Consensus       271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~  340 (362)
T 2ra8_A          271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDS  340 (362)
T ss_dssp             HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSB
T ss_pred             HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCC
Confidence            6665  5689999999887 8888877765   4589999999999999999998887755  345666643

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.53  E-value=2.7e-08  Score=85.30  Aligned_cols=48  Identities=19%  Similarity=0.385  Sum_probs=44.1

Q ss_pred             CCcCCCCHHHHHHHhcCCChHHHh-hHHhHhhHHHHHhccCCCcceeeec
Q 021717            9 RRWEDLDNDILVKIFQSFDIFELT-SGIAHVCSSWRSACCDPLLWKTLDL   57 (308)
Q Consensus         9 ~~~~~LP~eiL~~If~~L~~~d~~-~~~s~VCr~Wr~~~~~p~lw~~i~l   57 (308)
                      ..+..||+|||.+||.+|+.++++ + +++|||+|+.++.+|.+|+..-.
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r-~~~VCk~Wr~l~~~~~~w~~~~~   97 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQA-CRLVCLRWKELVDGAPLWLLKCQ   97 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHT-GGGTCHHHHHHHTSHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHH-HHHHhHHHHHHhcChHHHHHHhh
Confidence            467899999999999999999999 8 99999999999999999987643

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.52  E-value=7e-09  Score=82.09  Aligned_cols=112  Identities=17%  Similarity=0.199  Sum_probs=81.8

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      ..++|+.|+++++. +++..+...+..+++|+.|++++|.+...  ..+ ..+++|+.|+++++ +... +......+++
T Consensus        22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~-~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~   96 (168)
T 2ell_A           22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV--SNL-PKLPKLKKLELSENRIFGG-LDMLAEKLPN   96 (168)
T ss_dssp             CTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSC-CCCSSCCEEEEESCCCCSC-CCHHHHHCTT
T ss_pred             CcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhh-ccCCCCCEEECcCCcCchH-HHHHHhhCCC
Confidence            34789999999884 44323344467889999999999977644  333 35899999999987 4331 2234457999


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      |++|+++++.+++......+..+++|++|++++|...+
T Consensus        97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~  134 (168)
T 2ell_A           97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN  134 (168)
T ss_dssp             CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred             CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence            99999999998864322345679999999999986444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.44  E-value=3.3e-07  Score=80.93  Aligned_cols=127  Identities=15%  Similarity=0.159  Sum_probs=88.7

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  174 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~  174 (308)
                      ...++.+.+..+.......    ...+++|+.|+++++.......    +..+++|++|+++++.++.-  .. ...+++
T Consensus       198 l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~  266 (347)
T 4fmz_A          198 LTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTNQISDI--NA-VKDLTK  266 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCC--GG-GTTCTT
T ss_pred             CCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCcc----hhcCCCCCEEECCCCccCCC--hh-HhcCCC
Confidence            4567778776654332221    4568899999999874332211    67889999999999866542  22 335789


Q ss_pred             CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      |+.|+++++ +++.   .....+++|+.|+++++.++..... .+..+++|++|++++|...+
T Consensus       267 L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          267 LKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQNHITD  325 (347)
T ss_dssp             CCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECCSSSCCC
T ss_pred             cCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChh-HhhccccCCEEEccCCcccc
Confidence            999999887 4332   1245789999999998888765543 34678999999999987443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.41  E-value=1.2e-07  Score=77.07  Aligned_cols=126  Identities=13%  Similarity=0.107  Sum_probs=92.2

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  174 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~  174 (308)
                      ...++.+.+..+....-   . ....+++|++|+++++ .++... ...+..+++|+.|+++++.+++.....+. .+++
T Consensus        65 l~~L~~L~l~~n~~~~~---~-~l~~l~~L~~L~l~~n-~l~~~~-~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~-~l~~  137 (197)
T 4ezg_A           65 AHNIKDLTINNIHATNY---N-PISGLSNLERLRIMGK-DVTSDK-IPNLSGLTSLTLLDISHSAHDDSILTKIN-TLPK  137 (197)
T ss_dssp             CTTCSEEEEESCCCSCC---G-GGTTCTTCCEEEEECT-TCBGGG-SCCCTTCTTCCEEECCSSBCBGGGHHHHT-TCSS
T ss_pred             CCCCCEEEccCCCCCcc---h-hhhcCCCCCEEEeECC-ccCccc-ChhhcCCCCCCEEEecCCccCcHhHHHHh-hCCC
Confidence            45788888877632221   1 2335899999999987 444322 22356789999999999988876666665 5899


Q ss_pred             CCeeEecCC--CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          175 FRELKIMGP--FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       175 L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      |+.|+++++  +++-  . ....+++|++|+++++.+++-.   .+..+|+|++|++++..
T Consensus       138 L~~L~L~~n~~i~~~--~-~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          138 VNSIDLSYNGAITDI--M-PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CCEEECCSCTBCCCC--G-GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC-
T ss_pred             CCEEEccCCCCcccc--H-hhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCcc
Confidence            999999887  3332  1 2458999999999998887632   45679999999998764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.30  E-value=2e-07  Score=74.31  Aligned_cols=131  Identities=14%  Similarity=0.079  Sum_probs=81.7

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  174 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~  174 (308)
                      ...++.+.+.++....   +..+....++|+.|+++++ .++.-   ..+..+++|+.|+++++.++.-. ..+...+++
T Consensus        18 ~~~L~~L~l~~n~l~~---i~~~~~~~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~   89 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPV---IENLGATLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNNRICRIG-EGLDQALPD   89 (176)
T ss_dssp             TTSCEEEECTTSCCCS---CCCGGGGTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTT
T ss_pred             cCCceEEEeeCCCCch---hHHhhhcCCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCCcccccC-cchhhcCCC
Confidence            3456677776553221   1234445568999998887 44331   34567888999999888665321 112235788


Q ss_pred             CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHH--HHHHHHcCCCCCEEecccCC
Q 021717          175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDA--LILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~--l~~l~~~~p~L~~L~l~~C~  233 (308)
                      |+.|+++++ +++-........+++|+.|+++++.++...  -..++..+|+|+.|+++++.
T Consensus        90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            999998876 432111112347888999999877765321  12346678899999888765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.25  E-value=2.4e-06  Score=75.35  Aligned_cols=125  Identities=16%  Similarity=0.099  Sum_probs=89.7

Q ss_pred             cCCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCC
Q 021717           94 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR  173 (308)
Q Consensus        94 s~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~  173 (308)
                      ....++.+.+..+.......    ...+++|+.|++.++.......    +..+++|++|++++|.++....   ...++
T Consensus       175 ~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~---~~~l~  243 (347)
T 4fmz_A          175 NLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLSP---LANLS  243 (347)
T ss_dssp             GCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG---GTTCT
T ss_pred             cCCCCCEEEccCCccccccc----ccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCcc---hhcCC
Confidence            35678888887765432222    4568999999999874332221    6789999999999996653222   34689


Q ss_pred             CCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021717          174 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  235 (308)
Q Consensus       174 ~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i  235 (308)
                      +|++|+++++ +++.   .....+++|++|+++++.+++.   ..+..+++|+.|++++|...
T Consensus       244 ~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~  300 (347)
T 4fmz_A          244 QLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLG  300 (347)
T ss_dssp             TCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCC
T ss_pred             CCCEEECCCCccCCC---hhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCC
Confidence            9999999887 4331   1245889999999998888764   23567999999999998643

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.22  E-value=1.5e-06  Score=75.02  Aligned_cols=100  Identities=20%  Similarity=0.235  Sum_probs=46.9

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      .+++|+.|+++++. ++..   ..+..+++|++|+++++.+.+-  ..+. .+++|+.|+++++ +++-   .....+++
T Consensus        88 ~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L~~n~i~~~--~~l~-~l~~L~~L~l~~n~l~~~---~~l~~l~~  157 (291)
T 1h6t_A           88 NLKNLGWLFLDENK-VKDL---SSLKDLKKLKSLSLEHNGISDI--NGLV-HLPQLESLYLGNNKITDI---TVLSRLTK  157 (291)
T ss_dssp             TCTTCCEEECCSSC-CCCG---GGGTTCTTCCEEECTTSCCCCC--GGGG-GCTTCCEEECCSSCCCCC---GGGGGCTT
T ss_pred             cCCCCCEEECCCCc-CCCC---hhhccCCCCCEEECCCCcCCCC--hhhc-CCCCCCEEEccCCcCCcc---hhhccCCC
Confidence            45556666666542 2221   1144555666666655544321  1122 3555666655554 2221   11234555


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccC
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHC  232 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C  232 (308)
                      |++|+++++.+++..-   +..+++|++|++++|
T Consensus       158 L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N  188 (291)
T 1h6t_A          158 LDTLSLEDNQISDIVP---LAGLTKLQNLYLSKN  188 (291)
T ss_dssp             CSEEECCSSCCCCCGG---GTTCTTCCEEECCSS
T ss_pred             CCEEEccCCccccchh---hcCCCccCEEECCCC
Confidence            5555555555443221   344555555555555

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.16  E-value=1.3e-06  Score=83.21  Aligned_cols=36  Identities=33%  Similarity=0.330  Sum_probs=16.2

Q ss_pred             cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      .+++|+.|+|+++.+++-   .-+..+++|+.|+|++|.
T Consensus       173 ~l~~L~~L~Ls~N~i~~l---~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          173 GLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             TCTTCCEEECCSSCCCBC---GGGTTCTTCSEEECCSEE
T ss_pred             cCCCCCEEECcCCCCCCC---hHHccCCCCCEEEccCCc
Confidence            445555555554444431   112334555555555443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.16  E-value=2.5e-05  Score=63.02  Aligned_cols=98  Identities=13%  Similarity=0.152  Sum_probs=81.3

Q ss_pred             HHHHHHHHhcCCCCCEEEeCCC-CCChHHHHHHHHc---CCCCCeeEecCC-CCHHHHHHHH---hcCCCCcEEEeeCCC
Q 021717          137 KTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQN---CRNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTT  208 (308)
Q Consensus       137 ~~~l~~~~~~~~~L~~L~l~~~-~~~~~~l~~l~~~---~~~L~~L~l~~~-~~~~~~~~l~---~~~p~L~~L~L~~~~  208 (308)
                      +..+..+...-+.|++|+|+++ .++++....++..   -..|+.|+|+++ ++|.++.+++   +.-..|++|+|+.+.
T Consensus        30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~  109 (197)
T 1pgv_A           30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF  109 (197)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence            4567778888899999999986 8998887777663   357999999988 9998877665   355799999999999


Q ss_pred             CCHHHHHHHHHcC---CCCCEEecccCCC
Q 021717          209 LNRDALILILDGL---QNLEVLNISHCLL  234 (308)
Q Consensus       209 it~~~l~~l~~~~---p~L~~L~l~~C~~  234 (308)
                      |++.|..+|.+.+   +.|++|+|+++..
T Consensus       110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~  138 (197)
T 1pgv_A          110 LTPELLARLLRSTLVTQSIVEFKADNQRQ  138 (197)
T ss_dssp             CCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             CCHHHHHHHHHHHhhCCceeEEECCCCcC
Confidence            9999999888764   6799999997643

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.15  E-value=2.8e-07  Score=84.23  Aligned_cols=47  Identities=26%  Similarity=0.424  Sum_probs=43.3

Q ss_pred             cCCCCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhccC-CCcceeeecc
Q 021717           11 WEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCD-PLLWKTLDLS   58 (308)
Q Consensus        11 ~~~LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~-p~lw~~i~l~   58 (308)
                      +..||+||+.+||+||+.+++++ +++|||+|++++.+ +.+|+.+-+.
T Consensus        15 ~~~lp~~~~~~i~~~l~~~~l~~-~~~v~~~w~~~~~~~~~~w~~~~~~   62 (464)
T 3v7d_B           15 ITSLPFEISLKIFNYLQFEDIIN-SLGVSQNWNKIIRKSTSLWKKLLIS   62 (464)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHH-HHTTCHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHCCHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHhc
Confidence            47899999999999999999999 99999999999998 8999987654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.15  E-value=2.4e-06  Score=74.42  Aligned_cols=122  Identities=16%  Similarity=0.090  Sum_probs=62.3

Q ss_pred             CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCC
Q 021717           96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF  175 (308)
Q Consensus        96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L  175 (308)
                      ..++.+.+..+....-.    -...+++|+.|+++++. ++..  . .+..+++|++|+++++.++....   ...+++|
T Consensus        85 ~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L  153 (308)
T 1h6u_A           85 TKITELELSGNPLKNVS----AIAGLQSIKTLDLTSTQ-ITDV--T-PLAGLSNLQVLYLDLNQITNISP---LAGLTNL  153 (308)
T ss_dssp             CSCCEEECCSCCCSCCG----GGTTCTTCCEEECTTSC-CCCC--G-GGTTCTTCCEEECCSSCCCCCGG---GGGCTTC
T ss_pred             CCCCEEEccCCcCCCch----hhcCCCCCCEEECCCCC-CCCc--h-hhcCCCCCCEEECCCCccCcCcc---ccCCCCc
Confidence            45555555544322111    12245666666666652 2221  1 14566666666666664432111   2245666


Q ss_pred             CeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCC
Q 021717          176 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  234 (308)
Q Consensus       176 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~  234 (308)
                      +.|+++++ +++-..   ...+++|+.|+++++.+++..  . +..+++|++|++++|..
T Consensus       154 ~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~L~~N~l  207 (308)
T 1h6u_A          154 QYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDIS--P-LASLPNLIEVHLKNNQI  207 (308)
T ss_dssp             CEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG--G-GGGCTTCCEEECTTSCC
T ss_pred             cEEEccCCcCCCChh---hcCCCCCCEEECCCCccCcCh--h-hcCCCCCCEEEccCCcc
Confidence            67666655 322111   346667777777666655322  1 45567777777766643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.14  E-value=2.3e-06  Score=74.54  Aligned_cols=125  Identities=15%  Similarity=0.113  Sum_probs=86.1

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  174 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~  174 (308)
                      ...++.+.+..+....-..    ...+++|+.|+++++. ++..   ..+..+++|++|+++++.+++-  .. ...+++
T Consensus        62 l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~-l~~~---~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~  130 (308)
T 1h6u_A           62 LNNLIGLELKDNQITDLAP----LKNLTKITELELSGNP-LKNV---SAIAGLQSIKTLDLTSTQITDV--TP-LAGLSN  130 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCC-CSCC---GGGTTCTTCCEEECTTSCCCCC--GG-GTTCTT
T ss_pred             cCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCc-CCCc---hhhcCCCCCCEEECCCCCCCCc--hh-hcCCCC
Confidence            4567788887654322111    4567889999999874 4331   2366788999999999866532  22 345889


Q ss_pred             CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      |+.|+++++ ++....   ...+++|++|+++++.+++..  . +..+++|+.|++++|...+
T Consensus       131 L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          131 LQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLT--P-LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             CCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCC
T ss_pred             CCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCCh--h-hcCCCCCCEEECCCCccCc
Confidence            999999876 332111   458899999999988877532  2 5678999999999886433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.13  E-value=1.7e-06  Score=74.66  Aligned_cols=125  Identities=18%  Similarity=0.146  Sum_probs=91.4

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  174 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~  174 (308)
                      ...++.+.+..+....-   .. ...+++|+.|+++++. ++..   ..+..+++|+.|+++++.++.-  ..+ ..+++
T Consensus        89 l~~L~~L~l~~n~l~~~---~~-l~~l~~L~~L~L~~n~-i~~~---~~l~~l~~L~~L~l~~n~l~~~--~~l-~~l~~  157 (291)
T 1h6t_A           89 LKNLGWLFLDENKVKDL---SS-LKDLKKLKSLSLEHNG-ISDI---NGLVHLPQLESLYLGNNKITDI--TVL-SRLTK  157 (291)
T ss_dssp             CTTCCEEECCSSCCCCG---GG-GTTCTTCCEEECTTSC-CCCC---GGGGGCTTCCEEECCSSCCCCC--GGG-GGCTT
T ss_pred             CCCCCEEECCCCcCCCC---hh-hccCCCCCEEECCCCc-CCCC---hhhcCCCCCCEEEccCCcCCcc--hhh-ccCCC
Confidence            46788888877643331   12 3568999999999884 4331   3467899999999999976643  233 36899


Q ss_pred             CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      |+.|+++++ +++...   ...+++|++|+++++.+++-  .. +..+++|+.|+++++....
T Consensus       158 L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l--~~-l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          158 LDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL--RA-LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC--GG-GTTCTTCSEEEEEEEEEEC
T ss_pred             CCEEEccCCccccchh---hcCCCccCEEECCCCcCCCC--hh-hccCCCCCEEECcCCcccC
Confidence            999999987 443221   45899999999999988763  23 5679999999999886444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.13  E-value=2.7e-07  Score=73.51  Aligned_cols=110  Identities=15%  Similarity=0.154  Sum_probs=78.1

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      .+++|+.|+++++ .++.  +..+....++|+.|+++++.++.-  ..+ ..+++|+.|+++++ ++.- ...+...+++
T Consensus        17 ~~~~L~~L~l~~n-~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--~~l-~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~   89 (176)
T 1a9n_A           17 NAVRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSDNEIRKL--DGF-PLLRRLKTLLVNNNRICRI-GEGLDQALPD   89 (176)
T ss_dssp             CTTSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCSSCCCEE--CCC-CCCSSCCEEECCSSCCCEE-CSCHHHHCTT
T ss_pred             CcCCceEEEeeCC-CCch--hHHhhhcCCCCCEEECCCCCCCcc--ccc-ccCCCCCEEECCCCccccc-CcchhhcCCC
Confidence            4688999999987 4432  233444556999999999977643  233 35789999999987 4321 1122357999


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      |++|+++++.+++-.-...+..+++|+.|+++++...+
T Consensus        90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~  127 (176)
T 1a9n_A           90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN  127 (176)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC
Confidence            99999999998753221245679999999999987544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.11  E-value=9e-08  Score=84.28  Aligned_cols=40  Identities=30%  Similarity=0.438  Sum_probs=20.7

Q ss_pred             cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      .+++|++|+|+++.++.  +..-+..+++|++|++++|...+
T Consensus       204 ~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~  243 (328)
T 4fcg_A          204 NLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALR  243 (328)
T ss_dssp             GCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCC
T ss_pred             CCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchh
Confidence            55566666666555542  22223445666666666655443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.10  E-value=7.9e-07  Score=77.52  Aligned_cols=110  Identities=20%  Similarity=0.212  Sum_probs=55.4

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChH--HHHHHH-HcCCCCCeeEecCC-CC--HHHHHHHHhc
Q 021717          122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPY--LMEEIA-QNCRNFRELKIMGP-FD--LLFASTLNMY  195 (308)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~--~l~~l~-~~~~~L~~L~l~~~-~~--~~~~~~l~~~  195 (308)
                      ++|++|+++++. ++.. ....+..+++|++|+++++.+...  ....+. ..+++|++|+++++ ++  +.....+...
T Consensus       149 ~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  226 (312)
T 1wwl_A          149 PGLKVLSIAQAH-SLNF-SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA  226 (312)
T ss_dssp             TTCCEEEEESCS-CCCC-CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHT
T ss_pred             CCCcEEEeeCCC-Cccc-hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhc
Confidence            567777666552 2110 012234566667777766654432  122221 34566666666665 33  1223334445


Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          196 LPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       196 ~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      +++|++|+++++.++...-......+++|++|+++++.
T Consensus       227 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~  264 (312)
T 1wwl_A          227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG  264 (312)
T ss_dssp             TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred             CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence            66677777666665542211112234666666666664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.08  E-value=5.1e-06  Score=72.31  Aligned_cols=116  Identities=18%  Similarity=0.180  Sum_probs=71.5

Q ss_pred             hhCCCCcEEEcCCCCCCCHH--HHHHHHh-cCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHH-HH-HHH
Q 021717          119 ERCPQLKRLVMPAWNRIKKT--GICKAIR-MWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLL-FA-STL  192 (308)
Q Consensus       119 ~~~~~L~~L~L~~~~~~~~~--~l~~~~~-~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~-~~-~~l  192 (308)
                      ...++|+.|+|+++. ++..  .+..+.. ..++|++|+++++.+.......+. .+++|++|+++++ +... .. ..+
T Consensus       118 ~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          118 ATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             CCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             hcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHH
Confidence            346777777777653 3221  1111111 127788888877755432222222 4778888888877 4443 12 122


Q ss_pred             -HhcCCCCcEEEeeCCCCCH--HHHHHHHHcCCCCCEEecccCCCcC
Q 021717          193 -NMYLPKLKVLSLRCTTLNR--DALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       193 -~~~~p~L~~L~L~~~~it~--~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                       ...+++|++|+++++.++.  .....+...+++|++|+++++...+
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  242 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD  242 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence             1578999999999888873  3344566778999999999886444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.07  E-value=2.5e-06  Score=81.27  Aligned_cols=124  Identities=19%  Similarity=0.196  Sum_probs=91.1

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  174 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~  174 (308)
                      ...++.|.+..+....-..    ...+++|+.|+|+++. ++..   ..+..+++|+.|+|++|.+..  +..+ ..+++
T Consensus        64 l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N~l~~--l~~l-~~l~~  132 (605)
T 1m9s_A           64 LPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDENK-IKDL---SSLKDLKKLKSLSLEHNGISD--INGL-VHLPQ  132 (605)
T ss_dssp             CTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSSC-CCCC---TTSTTCTTCCEEECTTSCCCC--CGGG-GGCTT
T ss_pred             CCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCCC-CCCC---hhhccCCCCCEEEecCCCCCC--Cccc-cCCCc
Confidence            5678888887764332111    4578999999999884 4331   246789999999999997664  2233 36899


Q ss_pred             CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021717          175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  235 (308)
Q Consensus       175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i  235 (308)
                      |+.|.|+++ +.+.   .....+++|+.|+|+++.+++..-   +..+++|+.|+|++|..-
T Consensus       133 L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          133 LESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             CSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCC
T ss_pred             cCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCC
Confidence            999999987 4432   234589999999999888875332   678999999999998543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.06  E-value=1.5e-06  Score=79.15  Aligned_cols=46  Identities=22%  Similarity=0.400  Sum_probs=42.8

Q ss_pred             CcCCCCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCcceeee
Q 021717           10 RWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLD   56 (308)
Q Consensus        10 ~~~~LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~   56 (308)
                      .++.||+|++.+||+||+.+++.+ +++|||+|+.++.++.+|+.+-
T Consensus        18 ~~~~lp~e~~~~i~~~l~~~~l~~-~~~v~~~~~~~~~~~~~w~~~~   63 (445)
T 2ovr_B           18 FISLLPKELALYVLSFLEPKDLLQ-AAQTCRYWRILAEDNLLWREKC   63 (445)
T ss_dssp             TTTSSCHHHHHHHHTTSCHHHHHH-HTTSCHHHHHHHTCSHHHHHHH
T ss_pred             hhHHCCHHHHHHHHHhCCHHHHHH-HHHHhHHHHhhcCchhHhhhhe
Confidence            468999999999999999999999 9999999999999989999764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.04  E-value=5.2e-07  Score=82.05  Aligned_cols=45  Identities=29%  Similarity=0.489  Sum_probs=41.9

Q ss_pred             cCCCCHH----HHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCcceeee
Q 021717           11 WEDLDND----ILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLD   56 (308)
Q Consensus        11 ~~~LP~e----iL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~   56 (308)
                      ++.||+|    |+.+||+||+.+++++ +++|||+|+.++.++.+|+.+-
T Consensus        11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~-~~~v~~~w~~~~~~~~~w~~~~   59 (435)
T 1p22_A           11 ITALPARGLDHIAENILSYLDAKSLCA-AELVCKEWYRVTSDGMLWKKLI   59 (435)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHH-HHHHCHHHHHHHHHTTHHHHHH
T ss_pred             HHHCCcchHHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHhcChHHHHHHH
Confidence            4689999    9999999999999999 9999999999999999999763

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.03  E-value=3.9e-07  Score=83.46  Aligned_cols=113  Identities=15%  Similarity=0.062  Sum_probs=61.1

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHH-HHhcCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFAST-LNMYLP  197 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~-l~~~~p  197 (308)
                      .+++|+.|+++++..... --...+..+++|++|+++++.++......+. .+++|++|+++++ +++..... ....++
T Consensus        52 ~l~~L~~L~L~~n~~~~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~  129 (455)
T 3v47_A           52 RLQDLQFLKVEQQTPGLV-IRNNTFRGLSSLIILKLDYNQFLQLETGAFN-GLANLEVLTLTQCNLDGAVLSGNFFKPLT  129 (455)
T ss_dssp             SCTTCCEEECCCCSTTCE-ECTTTTTTCTTCCEEECTTCTTCEECTTTTT-TCTTCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred             cCccccEEECcCCcccce-ECcccccccccCCEEeCCCCccCccChhhcc-CcccCCEEeCCCCCCCccccCcccccCcc
Confidence            466777777776532111 0012245567777777777655432222222 3667777777665 43322211 134567


Q ss_pred             CCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCC
Q 021717          198 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  234 (308)
Q Consensus       198 ~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~  234 (308)
                      +|++|+|+++.++......++..+++|++|+++++..
T Consensus       130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A          130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            7777777766655432223345677777777776653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.02  E-value=2.1e-07  Score=75.66  Aligned_cols=105  Identities=23%  Similarity=0.182  Sum_probs=61.7

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      .+++|+.|+++++. ++.  +. .+..+++|+.|+++++.+..  +......+++|+.|+++++ ++.-  .. ...+++
T Consensus        46 ~l~~L~~L~ls~n~-l~~--l~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~l--~~-~~~l~~  116 (198)
T 1ds9_A           46 TLKACKHLALSTNN-IEK--IS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASL--SG-IEKLVN  116 (198)
T ss_dssp             HTTTCSEEECSEEE-ESC--CC-CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCCH--HH-HHHHHH
T ss_pred             cCCCCCEEECCCCC-Ccc--cc-ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCcC--Cc-cccCCC
Confidence            46777777777652 222  12 34566777777777774431  1122223567777777765 4331  12 235677


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      |++|+++++.+++-.....+..+++|++|+++++.
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence            77777777777653332345567777777777664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.01  E-value=3e-06  Score=73.76  Aligned_cols=137  Identities=12%  Similarity=0.072  Sum_probs=71.0

Q ss_pred             CccEEEccCCCCCCHHHHHHHH-hhCCCCcEEEcCCCCCCCHHH--H-HHHHhcCCCCCEEEeCCCCCChHHHHHHHHcC
Q 021717           97 SIRTLIFHFNLYVSDDQLTYTA-ERCPQLKRLVMPAWNRIKKTG--I-CKAIRMWRDLESLTMPSIANPPYLMEEIAQNC  172 (308)
Q Consensus        97 ~l~~l~l~~~~~~~d~~l~~l~-~~~~~L~~L~L~~~~~~~~~~--l-~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~  172 (308)
                      .++.+.+..+.... .....+. ...++|++|+|+++. ++...  + ......+++|++|+++++.+.......+ ..+
T Consensus        92 ~L~~L~l~~n~l~~-~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~l  168 (310)
T 4glp_A           92 RLKELTLEDLKITG-TMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV-RAF  168 (310)
T ss_dssp             CCCEEEEESCCCBS-CCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC-CCC
T ss_pred             ceeEEEeeCCEecc-chhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh-ccC
Confidence            47777765543211 0000111 345677777777653 22200  0 1122367777777777775432221222 246


Q ss_pred             CCCCeeEecCC-CCHHHHHHH---HhcCCCCcEEEeeCCCCC--HHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          173 RNFRELKIMGP-FDLLFASTL---NMYLPKLKVLSLRCTTLN--RDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       173 ~~L~~L~l~~~-~~~~~~~~l---~~~~p~L~~L~L~~~~it--~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      ++|++|+++++ +........   ...+|+|++|+|+++.++  ......++..+++|++|+++++...+
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~  238 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA  238 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc
Confidence            67777777766 343222111   135677777777777776  22233345667777777777765433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.00  E-value=6.1e-06  Score=75.99  Aligned_cols=36  Identities=25%  Similarity=0.231  Sum_probs=17.9

Q ss_pred             cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      .+++|+.|+++++.+++.   .-+..+++|+.|++++|.
T Consensus       329 ~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          329 SLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             GCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSC
T ss_pred             cCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCc
Confidence            455555555555444432   123345555555555554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.99  E-value=9.9e-07  Score=75.35  Aligned_cols=132  Identities=15%  Similarity=0.088  Sum_probs=67.7

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  174 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~  174 (308)
                      ...++.+.+..+....-   . ....+++|++|+++++ .++.. ....+..+++|++|+++++.++...... ...+++
T Consensus        62 l~~L~~L~l~~n~l~~~---~-~l~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~  134 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHDI---S-ALKELTNLTYLILTGN-QLQSL-PNGVFDKLTNLKELVLVENQLQSLPDGV-FDKLTN  134 (272)
T ss_dssp             CTTCCEEECTTSCCCCC---G-GGTTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTT
T ss_pred             CCCCcEEECCCCCCCCc---h-hhcCCCCCCEEECCCC-ccCcc-ChhHhcCCcCCCEEECCCCcCCccCHHH-hccCCC
Confidence            34566666655432221   1 1234566777777665 22210 0112345667777777766544211111 124567


Q ss_pred             CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021717          175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  235 (308)
Q Consensus       175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i  235 (308)
                      |++|+++++ ++... ......+++|+.|+++++.++... ...+..+++|++|++++|...
T Consensus       135 L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          135 LTYLNLAHNQLQSLP-KGVFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             CCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCS
T ss_pred             CCEEECCCCccCccC-HHHhccCccCCEEECCCCCcCccC-HHHhcCCccCCEEECCCCcCC
Confidence            777777665 22110 111235677777777776665211 122355777777777776533

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.98  E-value=3.1e-06  Score=71.95  Aligned_cols=100  Identities=21%  Similarity=0.224  Sum_probs=44.8

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      .+++|+.|+++++ .+++..  . +..+++|+.|+++++.++.  +..+..  ++|+.|+++++ +++-  .. ...+++
T Consensus        61 ~l~~L~~L~L~~N-~i~~~~--~-l~~l~~L~~L~L~~N~l~~--l~~~~~--~~L~~L~L~~N~l~~~--~~-l~~l~~  129 (263)
T 1xeu_A           61 FFTNLKELHLSHN-QISDLS--P-LKDLTKLEELSVNRNRLKN--LNGIPS--ACLSRLFLDNNELRDT--DS-LIHLKN  129 (263)
T ss_dssp             GCTTCCEEECCSS-CCCCCG--G-GTTCSSCCEEECCSSCCSC--CTTCCC--SSCCEEECCSSCCSBS--GG-GTTCTT
T ss_pred             hCCCCCEEECCCC-ccCCCh--h-hccCCCCCEEECCCCccCC--cCcccc--CcccEEEccCCccCCC--hh-hcCccc
Confidence            3556666666654 222211  1 4455666666666554332  011111  45555555544 2211  01 234555


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      |+.|+++++.+++..   .+..+++|+.|+++++.
T Consensus       130 L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A          130 LEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             CCEEECTTSCCCBCG---GGGGCTTCCEEECTTSC
T ss_pred             ccEEECCCCcCCCCh---HHccCCCCCEEECCCCc
Confidence            555555555544321   23345555555555543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.95  E-value=5.8e-07  Score=76.80  Aligned_cols=134  Identities=17%  Similarity=0.087  Sum_probs=81.2

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  174 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~  174 (308)
                      ...++.+.+..+....  ........+++|+.|+++++. ++.. ....+..+++|+.|++++|.++.... .....+++
T Consensus        84 l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~  158 (272)
T 3rfs_A           84 LTNLTYLILTGNQLQS--LPNGVFDKLTNLKELVLVENQ-LQSL-PDGVFDKLTNLTYLNLAHNQLQSLPK-GVFDKLTN  158 (272)
T ss_dssp             CTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTT
T ss_pred             CCCCCEEECCCCccCc--cChhHhcCCcCCCEEECCCCc-CCcc-CHHHhccCCCCCEEECCCCccCccCH-HHhccCcc
Confidence            4567888877653221  111112357889999988773 3211 11234577889999998886542211 11235788


Q ss_pred             CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021717          175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  235 (308)
Q Consensus       175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i  235 (308)
                      |+.|+++++ ++... ......+++|++|+++++.++... ...+..+++|+.|+++++...
T Consensus       159 L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          159 LTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             CCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBC
T ss_pred             CCEEECCCCCcCccC-HHHhcCCccCCEEECCCCcCCccC-HHHHhCCcCCCEEEccCCCcc
Confidence            999998876 33211 122346888999999887776321 133456888999999887644

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.95  E-value=7e-06  Score=75.57  Aligned_cols=104  Identities=13%  Similarity=0.091  Sum_probs=72.1

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      .+++|+.|+++++. ++..   ..+..+++|+.|++++|.+++...   ...+++|+.|++.++ +++.  . -...+++
T Consensus       285 ~l~~L~~L~L~~n~-l~~~---~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~-~l~~l~~  354 (466)
T 1o6v_A          285 GLTALTNLELNENQ-LEDI---SPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV--S-SLANLTN  354 (466)
T ss_dssp             TCTTCSEEECCSSC-CSCC---GGGGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC--G-GGTTCTT
T ss_pred             CCCccCeEEcCCCc-ccCc---hhhcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc--h-hhccCCC
Confidence            46677777777653 2221   115677888888888886553221   236889999999877 3332  1 2358999


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      |+.|+++++.+++...   +..+++|+.|++++|.-..
T Consensus       355 L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          355 INWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEEC
T ss_pred             CCEEeCCCCccCccch---hhcCCCCCEEeccCCcccC
Confidence            9999999988875432   5789999999999986544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.93  E-value=3.8e-07  Score=77.97  Aligned_cols=109  Identities=18%  Similarity=0.167  Sum_probs=48.5

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCC
Q 021717          121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL  199 (308)
Q Consensus       121 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L  199 (308)
                      +++|+.|+++++ .++... ...+..+++|+.|+++++.+.......+. .+++|++|.+.++ +....... ...+++|
T Consensus        51 l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L  126 (276)
T 2z62_A           51 FPELQVLDLSRC-EIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLENFP-IGHLKTL  126 (276)
T ss_dssp             CTTCSEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTSCCCCSTTCC-CTTCTTC
T ss_pred             ccCCcEEECCCC-cCCccC-HHHccCCcCCCEEECCCCccCccChhhhc-CCccccEEECCCCCccccCchh-cccCCCC
Confidence            456666666654 222100 11234455666666665544322111121 3455666666543 11100000 2245566


Q ss_pred             cEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          200 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       200 ~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      ++|+++++.++...+...+..+++|++|++++|.
T Consensus       127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~  160 (276)
T 2z62_A          127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (276)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             CEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence            6666655554432222333445566666665554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.92  E-value=1.2e-06  Score=71.11  Aligned_cols=124  Identities=21%  Similarity=0.122  Sum_probs=85.7

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  174 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~  174 (308)
                      ...++.+.+..+....   +. ....+++|+.|+++++. ++  .+......+++|+.|++++|.++.  +..+. .+++
T Consensus        47 l~~L~~L~ls~n~l~~---l~-~~~~l~~L~~L~l~~n~-l~--~l~~~~~~~~~L~~L~L~~N~l~~--l~~~~-~l~~  116 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK---IS-SLSGMENLRILSLGRNL-IK--KIENLDAVADTLEELWISYNQIAS--LSGIE-KLVN  116 (198)
T ss_dssp             TTTCSEEECSEEEESC---CC-CHHHHTTCCEEEEEEEE-EC--SCSSHHHHHHHCSEEEEEEEECCC--HHHHH-HHHH
T ss_pred             CCCCCEEECCCCCCcc---cc-ccccCCCCCEEECCCCC-cc--cccchhhcCCcCCEEECcCCcCCc--CCccc-cCCC
Confidence            4567788776543222   12 22357899999999873 33  233445567899999999997765  33444 4789


Q ss_pred             CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHH---------HHHHHHHcCCCCCEEe
Q 021717          175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRD---------ALILILDGLQNLEVLN  228 (308)
Q Consensus       175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~---------~l~~l~~~~p~L~~L~  228 (308)
                      |+.|+++++ +++-........+++|++|+++++.++..         ....++..+|+|+.|+
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            999999987 55433223345899999999998877543         2234567899999998

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.92  E-value=4.1e-06  Score=78.10  Aligned_cols=110  Identities=15%  Similarity=0.184  Sum_probs=57.6

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcC-C
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYL-P  197 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~-p  197 (308)
                      .+++|+.|+++++....-..+...+..+++|+.|+++++.+....-......+++|+.|+++++ ++..    +...+ +
T Consensus       346 ~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~  421 (520)
T 2z7x_B          346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT----IFRCLPP  421 (520)
T ss_dssp             CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGG----GGGSCCT
T ss_pred             cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcc----hhhhhcc
Confidence            3556666666655322223344445566666666666664432111111123456666666655 3321    11223 5


Q ss_pred             CCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021717          198 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  235 (308)
Q Consensus       198 ~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i  235 (308)
                      +|+.|+++++.++  .+..-+..+++|++|++++|...
T Consensus       422 ~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~l~  457 (520)
T 2z7x_B          422 RIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLK  457 (520)
T ss_dssp             TCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             cCCEEECCCCccc--ccchhhhcCCCCCEEECCCCcCC
Confidence            7777777776666  23332336777888888777533

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.91  E-value=3.1e-06  Score=78.91  Aligned_cols=134  Identities=15%  Similarity=0.122  Sum_probs=90.1

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  174 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~  174 (308)
                      ...++.+.+..+....-..+......+++|+.|+++++. ++...-...+..+++|++|++++|.++......+   .++
T Consensus       347 l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~  422 (520)
T 2z7x_B          347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---PPR  422 (520)
T ss_dssp             CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC---CTT
T ss_pred             CCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccchhccCccCCEEECcCCCCCcchhhhh---ccc
Confidence            345677777665444333344445578999999999874 3321001134567999999999998875443322   279


Q ss_pred             CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHH-HHHcCCCCCEEecccCCCcC
Q 021717          175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALIL-ILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~-l~~~~p~L~~L~l~~C~~i~  236 (308)
                      |+.|+++++ ++ .....+. .+++|++|+++++.++.  +.. .+..+++|++|+++++.-..
T Consensus       423 L~~L~Ls~N~l~-~ip~~~~-~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          423 IKVLDLHSNKIK-SIPKQVV-KLEALQELNVASNQLKS--VPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             CCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCEEECCCCccc-ccchhhh-cCCCCCEEECCCCcCCc--cCHHHhccCCcccEEECcCCCCcc
Confidence            999999987 44 1111233 89999999999888873  222 35678999999999986543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.90  E-value=1.4e-06  Score=75.81  Aligned_cols=112  Identities=17%  Similarity=0.147  Sum_probs=56.8

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHH-HHHH--HHcCCCCCeeEecCC-CC--HHHHHHHH
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYL-MEEI--AQNCRNFRELKIMGP-FD--LLFASTLN  193 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-l~~l--~~~~~~L~~L~l~~~-~~--~~~~~~l~  193 (308)
                      .+++|+.|+|+++. ++.. ....+..+++|++|++++|.+.... +...  ...+++|++|+++++ ++  +.....+.
T Consensus       143 ~~~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~  220 (310)
T 4glp_A          143 LKPGLKVLSIAQAH-SPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA  220 (310)
T ss_dssp             BCSCCCEEEEECCS-SCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred             hccCCCEEEeeCCC-cchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence            46677777776653 2110 1122345667777777776544321 1111  124566777777665 33  22233334


Q ss_pred             hcCCCCcEEEeeCCCCCHHHHHHHHHcC---CCCCEEecccCCC
Q 021717          194 MYLPKLKVLSLRCTTLNRDALILILDGL---QNLEVLNISHCLL  234 (308)
Q Consensus       194 ~~~p~L~~L~L~~~~it~~~l~~l~~~~---p~L~~L~l~~C~~  234 (308)
                      ..+++|++|+|+++.+++..... +..+   ++|++|+++++..
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~L~~L~Ls~N~l  263 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPS-APRCMWSSALNSLNLSFAGL  263 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSC-CSSCCCCTTCCCEECCSSCC
T ss_pred             hcCCCCCEEECCCCCCCccchhh-HHhccCcCcCCEEECCCCCC
Confidence            46677777777766655321101 1122   5677777766643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.86  E-value=3.7e-06  Score=71.51  Aligned_cols=124  Identities=15%  Similarity=0.183  Sum_probs=88.5

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  174 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~  174 (308)
                      ...++.+.+..+....-..    ...+++|+.|+++++. ++.  +.. ... ++|+.|+++++.+++-  ..+ ..+++
T Consensus        62 l~~L~~L~L~~N~i~~~~~----l~~l~~L~~L~L~~N~-l~~--l~~-~~~-~~L~~L~L~~N~l~~~--~~l-~~l~~  129 (263)
T 1xeu_A           62 FTNLKELHLSHNQISDLSP----LKDLTKLEELSVNRNR-LKN--LNG-IPS-ACLSRLFLDNNELRDT--DSL-IHLKN  129 (263)
T ss_dssp             CTTCCEEECCSSCCCCCGG----GTTCSSCCEEECCSSC-CSC--CTT-CCC-SSCCEEECCSSCCSBS--GGG-TTCTT
T ss_pred             CCCCCEEECCCCccCCChh----hccCCCCCEEECCCCc-cCC--cCc-ccc-CcccEEEccCCccCCC--hhh-cCccc
Confidence            4678888887664322221    4578999999999873 332  111 122 8999999999977642  233 35899


Q ss_pred             CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      |+.|+++++ +++-.   ....+++|+.|+++++.+++.   ..+..+++|+.|+++++....
T Consensus       130 L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          130 LEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             CCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEEC
T ss_pred             ccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcccC
Confidence            999999987 44321   245899999999999998865   445679999999999876444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=97.84  E-value=5e-07  Score=79.51  Aligned_cols=133  Identities=21%  Similarity=0.187  Sum_probs=88.8

Q ss_pred             cCCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCC
Q 021717           94 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR  173 (308)
Q Consensus        94 s~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~  173 (308)
                      ....++.+.+..+...  ..-..+. .+++|++|+|+++. ++  .+...+..+++|++|+++++.+. .....+ ..++
T Consensus        79 ~~~~l~~L~L~~n~l~--~lp~~l~-~l~~L~~L~L~~n~-l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~  150 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP--QFPDQAF-RLSHLQHMTIDAAG-LM--ELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLN  150 (328)
T ss_dssp             TSTTCCEEEEESSCCS--SCCSCGG-GGTTCSEEEEESSC-CC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCT
T ss_pred             cccceeEEEccCCCch--hcChhhh-hCCCCCEEECCCCC-cc--chhHHHhccCCCCEEECCCCccc-cCcHHH-hcCc
Confidence            4567888888764322  1111122 47899999999873 33  23344678999999999999665 222223 3589


Q ss_pred             CCCeeEecCC-CCHHHHHHH--------HhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          174 NFRELKIMGP-FDLLFASTL--------NMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       174 ~L~~L~l~~~-~~~~~~~~l--------~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      +|++|+++++ ........+        ...+++|++|+++++.++  .+..-+..+++|++|++++|....
T Consensus       151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~  220 (328)
T 4fcg_A          151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSA  220 (328)
T ss_dssp             TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred             CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCc
Confidence            9999999874 211100111        124999999999988877  333446789999999999987543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.83  E-value=1.8e-06  Score=77.50  Aligned_cols=105  Identities=18%  Similarity=0.199  Sum_probs=55.7

Q ss_pred             CCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcE
Q 021717          123 QLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKV  201 (308)
Q Consensus       123 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~  201 (308)
                      +|+.|+++++. +++.   ..+..+++|++|+++++.+.......+. .+++|+.|+++++ ++.-  ......+|+|++
T Consensus       227 ~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~  299 (390)
T 3o6n_A          227 ELTILKLQHNN-LTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNRLVAL--NLYGQPIPTLKV  299 (390)
T ss_dssp             SCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECCSSCCCEE--ECSSSCCTTCCE
T ss_pred             cccEEECCCCC-Cccc---HHHcCCCCccEEECCCCcCCCcChhHcc-ccccCCEEECCCCcCccc--CcccCCCCCCCE
Confidence            45555555542 2221   2345667777777777755432222222 3567777777665 2210  001135677777


Q ss_pred             EEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          202 LSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       202 L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      |+++++.++.  +..-+..+++|++|++++|...+
T Consensus       300 L~L~~n~l~~--~~~~~~~l~~L~~L~L~~N~i~~  332 (390)
T 3o6n_A          300 LDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVT  332 (390)
T ss_dssp             EECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCC
T ss_pred             EECCCCccee--cCccccccCcCCEEECCCCccce
Confidence            7777666652  22223456777777777766433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.81  E-value=8e-08  Score=83.50  Aligned_cols=113  Identities=22%  Similarity=0.246  Sum_probs=59.6

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCC
Q 021717          121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL  199 (308)
Q Consensus       121 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L  199 (308)
                      +++|+.|+++++. ++.......+..+++|+.|+++++.+.......+ ..+++|++|+++++ +.+.........+++|
T Consensus       100 l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  177 (306)
T 2z66_A          100 LEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF-NGLSSLEVLKMAGNSFQENFLPDIFTELRNL  177 (306)
T ss_dssp             CTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             CCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhc-ccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence            4555555555542 1111111234456667777776664432211112 23567777777665 3221111223467788


Q ss_pred             cEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          200 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       200 ~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      ++|+++++.++.... ..+..+++|++|+++++...+
T Consensus       178 ~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~  213 (306)
T 2z66_A          178 TFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFS  213 (306)
T ss_dssp             CEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCSB
T ss_pred             CEEECCCCCcCCcCH-HHhcCCCCCCEEECCCCccCc
Confidence            888888777654221 223567888888888876443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.80  E-value=3.4e-07  Score=79.47  Aligned_cols=110  Identities=19%  Similarity=0.141  Sum_probs=46.9

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      .+++|+.|+++++. ++.. ....+..+++|++|+++++.+....+......+++|+.|+++++ ++.... .....+++
T Consensus       124 ~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~  200 (306)
T 2z66_A          124 SLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSS  200 (306)
T ss_dssp             TCTTCCEEECTTSC-CEEC-STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTT
T ss_pred             hccCCCEEECCCCc-CCcc-chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCCC
Confidence            34566666666542 1110 11123445566666665554332111111223455666665554 221100 11124555


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      |++|+++++.++..... .+..+++|++|+++++.
T Consensus       201 L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          201 LQVLNMSHNNFFSLDTF-PYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             CCEEECTTSCCSBCCSG-GGTTCTTCCEEECTTSC
T ss_pred             CCEEECCCCccCccChh-hccCcccCCEeECCCCC
Confidence            55555555544321111 12345555555555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.78  E-value=3.4e-06  Score=72.31  Aligned_cols=38  Identities=24%  Similarity=0.188  Sum_probs=18.7

Q ss_pred             cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      .+++|+.|+++++.++.... ..+..+++|+.|+++++.
T Consensus       199 ~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          199 DLGRLMTLYLFANNLSALPT-EALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             TCTTCCEEECCSSCCSCCCH-HHHTTCTTCCEEECCSSC
T ss_pred             CcccccEeeCCCCcCCcCCH-HHcccCcccCEEeccCCC
Confidence            45555555555555443211 223445556666555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.77  E-value=1.2e-06  Score=71.62  Aligned_cols=132  Identities=14%  Similarity=0.060  Sum_probs=83.0

Q ss_pred             CccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCC
Q 021717           97 SIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFR  176 (308)
Q Consensus        97 ~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~  176 (308)
                      .++.+.+..+...  .........+++|++|+++++ .++.. ....+..+++|++|+++++.++.... .....+++|+
T Consensus        29 ~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~  103 (208)
T 2o6s_A           29 QTTYLDLETNSLK--SLPNGVFDELTSLTQLYLGGN-KLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPN-GVFDKLTQLK  103 (208)
T ss_dssp             TCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCC
T ss_pred             CCcEEEcCCCccC--cCChhhhcccccCcEEECCCC-ccCcc-ChhhcCCCCCcCEEECCCCcCCccCH-hHhcCccCCC
Confidence            4666766554321  111112245789999999986 33321 11234678999999999986652211 1123578999


Q ss_pred             eeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021717          177 ELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  235 (308)
Q Consensus       177 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i  235 (308)
                      .|+++++ ++... ......+++|++|+++++.++... ...+..+++|++|+++++...
T Consensus       104 ~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          104 ELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             EEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBC
T ss_pred             EEEcCCCcCcccC-HhHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecCCCee
Confidence            9999876 33111 112347899999999988776321 123466899999999988544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.76  E-value=1.5e-06  Score=76.23  Aligned_cols=62  Identities=10%  Similarity=-0.034  Sum_probs=29.0

Q ss_pred             CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCC
Q 021717           96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIA  159 (308)
Q Consensus        96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  159 (308)
                      ..++.+.+..+... . ........+++|+.|+++++...........+..+++|+.|+++++.
T Consensus       121 ~~L~~L~l~~n~l~-~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          121 KTLQELRVHENEIT-K-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             TTCCEEECCSSCCC-B-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             ccccEEECCCCccc-c-cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence            35666666544221 1 11112234667777777765321111112234456666666666553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.76  E-value=1.4e-06  Score=82.93  Aligned_cols=111  Identities=18%  Similarity=0.158  Sum_probs=72.6

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      .+++|+.|+|+++ .++.- -...+..+++|++|+|++|.+..-....+ ..+++|++|+++++ ++.-.. .....+++
T Consensus        74 ~l~~L~~L~Ls~N-~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f-~~L~~L~~L~Ls~N~l~~l~~-~~~~~L~~  149 (635)
T 4g8a_A           74 SFPELQVLDLSRC-EIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETNLASLEN-FPIGHLKT  149 (635)
T ss_dssp             TCTTCCEEECTTC-CCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGG-TTCTTCCEEECTTSCCCCSTT-CCCTTCTT
T ss_pred             CCCCCCEEECCCC-cCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHh-cCCCCCCEEECCCCcCCCCCh-hhhhcCcc
Confidence            5788999999887 33210 01235678899999999886543221222 35788999999876 321110 11247889


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCC
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  234 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~  234 (308)
                      |++|+|+++.++...+...+..+++|++|+++++..
T Consensus       150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             cCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence            999999888776443444556788999999988753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.75  E-value=2e-06  Score=69.59  Aligned_cols=108  Identities=14%  Similarity=0.114  Sum_probs=71.8

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCc
Q 021717          122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK  200 (308)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~  200 (308)
                      ++|+.|++++. .++.  +...+..+++|+.|+++++.++......+ ..+++|++|+++++ ++.-.. .....+++|+
T Consensus        31 ~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~  105 (193)
T 2wfh_A           31 RDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSF-SNMTQLLTLILSYNRLRCIPP-RTFDGLKSLR  105 (193)
T ss_dssp             TTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCBCCT-TTTTTCTTCC
T ss_pred             CCCCEEECCCC-cCch--hHHHhhcccCCCEEECCCCcCCEeCHhHc-cCCCCCCEEECCCCccCEeCH-HHhCCCCCCC
Confidence            57889998876 3331  22456788999999999986653222222 25789999999876 321111 1134789999


Q ss_pred             EEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021717          201 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  235 (308)
Q Consensus       201 ~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i  235 (308)
                      +|+|+++.++.-. ...+..+++|+.|++++..-.
T Consensus       106 ~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          106 LLSLHGNDISVVP-EGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             EEECCSSCCCBCC-TTTTTTCTTCCEEECCSSCEE
T ss_pred             EEECCCCCCCeeC-hhhhhcCccccEEEeCCCCee
Confidence            9999988876321 123456899999999876543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.73  E-value=1.6e-07  Score=88.47  Aligned_cols=38  Identities=26%  Similarity=0.322  Sum_probs=20.2

Q ss_pred             cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      .+++|+.|+++++.++.... ..+..+++|++|++++|.
T Consensus       468 ~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~  505 (570)
T 2z63_A          468 ELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMASNQ  505 (570)
T ss_dssp             TCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSC
T ss_pred             cccCCCEEECCCCccccCCh-hhhhcccCCCEEeCCCCc
Confidence            45666666666555543211 123346666666666664

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.73  E-value=2.9e-06  Score=70.58  Aligned_cols=132  Identities=14%  Similarity=0.004  Sum_probs=81.4

Q ss_pred             CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCC
Q 021717           96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF  175 (308)
Q Consensus        96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L  175 (308)
                      ..++.+.+..+....-  .......+++|+.|+|+++. ++.- -...+..+++|+.|+++++.++.-.- .....+++|
T Consensus        40 ~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L~~N~-l~~i-~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L  114 (229)
T 3e6j_A           40 TNAQILYLHDNQITKL--EPGVFDSLINLKELYLGSNQ-LGAL-PVGVFDSLTQLTVLDLGTNQLTVLPS-AVFDRLVHL  114 (229)
T ss_dssp             TTCSEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred             CCCCEEEcCCCccCcc--CHHHhhCccCCcEEECCCCC-CCCc-ChhhcccCCCcCEEECCCCcCCccCh-hHhCcchhh
Confidence            5677888776543210  01112357889999998863 3211 01234678899999999886542211 112357889


Q ss_pred             CeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021717          176 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  235 (308)
Q Consensus       176 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i  235 (308)
                      +.|+++++ +..  +..-...+++|++|+|+++.++.-.- ..+..+++|+.|++++....
T Consensus       115 ~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          115 KELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CEEECCSSCCCS--CCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCBC
T ss_pred             CeEeccCCcccc--cCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCcc
Confidence            99999876 331  11112578999999999887763211 33466889999999876533

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.71  E-value=2.5e-06  Score=75.63  Aligned_cols=135  Identities=20%  Similarity=0.192  Sum_probs=85.6

Q ss_pred             CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCC
Q 021717           96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF  175 (308)
Q Consensus        96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L  175 (308)
                      ..++.+.+..+.. +. ........+++|+.|+++++ .++.. ....+..+++|++|+++++.++.-....+ ..+++|
T Consensus        52 ~~L~~L~l~~n~i-~~-~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L  126 (353)
T 2z80_A           52 EAVKSLDLSNNRI-TY-ISNSDLQRCVNLQALVLTSN-GINTI-EEDSFSSLGSLEHLDLSYNYLSNLSSSWF-KPLSSL  126 (353)
T ss_dssp             TTCCEEECTTSCC-CE-ECTTTTTTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECCSSCCSSCCHHHH-TTCTTC
T ss_pred             ccCcEEECCCCcC-cc-cCHHHhccCCCCCEEECCCC-ccCcc-CHhhcCCCCCCCEEECCCCcCCcCCHhHh-CCCccC
Confidence            4688888876532 11 00111246799999999987 34321 11235678999999999997653222223 358999


Q ss_pred             CeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCC-CCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          176 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCT-TLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       176 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~-~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      ++|+++++ +..-........+++|++|+++++ .++... ...+..+++|++|++++|....
T Consensus       127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCE
T ss_pred             CEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCCCCcCc
Confidence            99999876 332110012347899999999966 344221 1234568999999999986443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.71  E-value=1.6e-06  Score=81.61  Aligned_cols=110  Identities=18%  Similarity=0.159  Sum_probs=50.4

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      .+++|++|+++++ .++.. ....+..+++|++|+++++.+.......+. .+++|++|++.++ +..-.... ...+++
T Consensus        50 ~l~~L~~L~Ls~n-~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~-~~~l~~  125 (570)
T 2z63_A           50 SFPELQVLDLSRC-EIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLENFP-IGHLKT  125 (570)
T ss_dssp             TCSSCCEEECTTC-CCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTSCCCCSTTCS-CTTCTT
T ss_pred             CCCCceEEECCCC-cCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhc-CccccccccccccccccCCCcc-cccccc
Confidence            3566666666655 22210 012234556666666666644322111222 3556666666554 21100001 235566


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      |++|+++++.++...+...+..+++|++|+++++.
T Consensus       126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~  160 (570)
T 2z63_A          126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (570)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred             ccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence            66666665554432222223455666666666554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.70  E-value=1.4e-06  Score=82.76  Aligned_cols=110  Identities=16%  Similarity=0.118  Sum_probs=57.5

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      .+++|++|+++++ .++.. ....+..+++|++|+++++.+.......+. .+++|++|+++++ +....... ...+++
T Consensus        54 ~l~~L~~L~Ls~n-~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~-~~~l~~  129 (606)
T 3vq2_A           54 NFSELQWLDLSRC-EIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFS-GLTSLENLVAVETKLASLESFP-IGQLIT  129 (606)
T ss_dssp             TCTTCCEEECTTC-CCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSST-TCTTCCEEECTTSCCCCSSSSC-CTTCTT
T ss_pred             CCccCcEEeCCCC-ccccc-CHHHhhchhhcCEeECCCCcccccChhhcC-CcccCCEEEccCCccccccccc-cCCCCC
Confidence            4567777777765 22211 012235666777777776654322122222 4667777777655 22110001 235667


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      |++|+++++.++...+...+..+++|++|+++++.
T Consensus       130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~  164 (606)
T 3vq2_A          130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY  164 (606)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred             CCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence            77777776665532233344556777777776664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.69  E-value=2.4e-06  Score=80.17  Aligned_cols=135  Identities=19%  Similarity=0.211  Sum_probs=87.2

Q ss_pred             CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCC
Q 021717           96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF  175 (308)
Q Consensus        96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L  175 (308)
                      ..++.+.+..+.. +.-.. .....+++|++|+++++. ++.. ....+..+++|++|+++++.+.......++ .+++|
T Consensus        26 ~~L~~L~Ls~n~l-~~~~~-~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L  100 (549)
T 2z81_A           26 AAMKSLDLSFNKI-TYIGH-GDLRACANLQVLILKSSR-INTI-EGDAFYSLGSLEHLDLSDNHLSSLSSSWFG-PLSSL  100 (549)
T ss_dssp             TTCCEEECCSSCC-CEECS-STTSSCTTCCEEECTTSC-CCEE-CTTTTTTCTTCCEEECTTSCCCSCCHHHHT-TCTTC
T ss_pred             CCccEEECcCCcc-CccCh-hhhhcCCcccEEECCCCC-cCcc-ChhhccccccCCEEECCCCccCccCHHHhc-cCCCC
Confidence            5688888876542 11100 112467899999999873 3321 113356889999999999976644444444 58999


Q ss_pred             CeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCC-CCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          176 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTT-LNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       176 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      ++|+++++ +...........+++|++|+++++. ++.. ....+..+++|++|+++++...+
T Consensus       101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A          101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI-RRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE-CTTTTTTCCEEEEEEEEETTCCE
T ss_pred             cEEECCCCcccccchhhhhhccCCccEEECCCCcccccc-CHhhhhcccccCeeeccCCcccc
Confidence            99999886 3321111123578999999999765 3321 11234668999999999887443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.69  E-value=2.5e-06  Score=71.83  Aligned_cols=109  Identities=15%  Similarity=0.105  Sum_probs=53.3

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      .+++|+.|+|+++. ++.. ....+..+++|++|+++++.++.-... ....+++|+.|+++++ ++.-.. .....+++
T Consensus        81 ~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~  156 (251)
T 3m19_A           81 DLTELGTLGLANNQ-LASL-PLGVFDHLTQLDKLYLGGNQLKSLPSG-VFDRLTKLKELRLNTNQLQSIPA-GAFDKLTN  156 (251)
T ss_dssp             TCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTT
T ss_pred             cCCcCCEEECCCCc-cccc-ChhHhcccCCCCEEEcCCCcCCCcChh-HhccCCcccEEECcCCcCCccCH-HHcCcCcC
Confidence            35666666666542 2210 012234566666666666644311111 1123566677766654 221100 11235667


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      |++|+|+++.++... ...+..+++|+.|+++++.
T Consensus       157 L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          157 LQTLSLSTNQLQSVP-HGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCC
T ss_pred             CCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCCc
Confidence            777777766654211 1123456677777776654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.69  E-value=2.4e-06  Score=73.34  Aligned_cols=109  Identities=15%  Similarity=0.043  Sum_probs=56.2

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      .+++|++|+++++. ++.. ....+..+++|++|+++++.+.......+ ..+++|+.|+++++ ++.... .....+++
T Consensus       103 ~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~  178 (285)
T 1ozn_A          103 GLGRLHTLHLDRCG-LQEL-GPGLFRGLAALQYLYLQDNALQALPDDTF-RDLGNLTHLFLHGNRISSVPE-RAFRGLHS  178 (285)
T ss_dssp             TCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCEECT-TTTTTCTT
T ss_pred             CCcCCCEEECCCCc-CCEE-CHhHhhCCcCCCEEECCCCcccccCHhHh-ccCCCccEEECCCCcccccCH-HHhcCccc
Confidence            35666666666552 2110 01224456667777776664432111111 23567777777665 221110 11235677


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      |++|+++++.++.... ..+..+++|+.|+++++.
T Consensus       179 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~  212 (285)
T 1ozn_A          179 LDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANN  212 (285)
T ss_dssp             CCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSC
T ss_pred             cCEEECCCCcccccCH-hHccCcccccEeeCCCCc
Confidence            7777777666653321 223456777777777764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.68  E-value=6e-06  Score=73.12  Aligned_cols=19  Identities=26%  Similarity=0.315  Sum_probs=12.8

Q ss_pred             HHHcCCCCCEEecccCCCc
Q 021717          217 ILDGLQNLEVLNISHCLLI  235 (308)
Q Consensus       217 l~~~~p~L~~L~l~~C~~i  235 (308)
                      .+..+++|++|+++++...
T Consensus       272 ~l~~l~~L~~L~Ls~N~l~  290 (353)
T 2z80_A          272 LLNQISGLLELEFSRNQLK  290 (353)
T ss_dssp             HHHTCTTCCEEECCSSCCC
T ss_pred             HHhcccCCCEEECCCCCCC
Confidence            3456777888888777533

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.67  E-value=2.4e-06  Score=71.92  Aligned_cols=133  Identities=18%  Similarity=0.119  Sum_probs=84.8

Q ss_pred             CccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCC
Q 021717           97 SIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFR  176 (308)
Q Consensus        97 ~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~  176 (308)
                      .++.+.+..+....-.  ......+++|+.|+|+++ .++.. ....+..+++|+.|+++++.++...... ...+++|+
T Consensus        36 ~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~  110 (251)
T 3m19_A           36 DTEKLDLQSTGLATLS--DATFRGLTKLTWLNLDYN-QLQTL-SAGVFDDLTELGTLGLANNQLASLPLGV-FDHLTQLD  110 (251)
T ss_dssp             TCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCC
T ss_pred             CCCEEEccCCCcCccC--HhHhcCcccCCEEECCCC-cCCcc-CHhHhccCCcCCEEECCCCcccccChhH-hcccCCCC
Confidence            4566666554321100  011235799999999987 33321 1223567899999999999665322222 23579999


Q ss_pred             eeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          177 ELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       177 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      +|+++++ ++.-. ......+++|+.|+|+++.++...- ..+..+++|++|+++++...+
T Consensus       111 ~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A          111 KLYLGGNQLKSLP-SGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             EEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSC
T ss_pred             EEEcCCCcCCCcC-hhHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCc
Confidence            9999886 33111 1123478999999999888763221 234578999999999986443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.66  E-value=7.7e-06  Score=77.30  Aligned_cols=106  Identities=18%  Similarity=0.181  Sum_probs=76.8

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCc
Q 021717          122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK  200 (308)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~  200 (308)
                      ..|+.|+|+++ .++.  +.. +..+++|+.|++++|.++ .....+ ..+++|+.|+++++ ++.  +. -...+++|+
T Consensus       441 ~~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~  511 (567)
T 1dce_A          441 ADVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPAL-AALRCLEVLQASDNALEN--VD-GVANLPRLQ  511 (567)
T ss_dssp             TTCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGG-GGCTTCCEEECCSSCCCC--CG-GGTTCSSCC
T ss_pred             cCceEEEecCC-CCCC--CcC-ccccccCcEeecCccccc-ccchhh-hcCCCCCEEECCCCCCCC--Cc-ccCCCCCCc
Confidence            46999999987 4433  233 678899999999999765 111233 35899999999987 443  12 235899999


Q ss_pred             EEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          201 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       201 ~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      .|+|++|.++.......+..+++|+.|+++++...+
T Consensus       512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence            999999888754213345679999999999986544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.66  E-value=2.6e-06  Score=70.39  Aligned_cols=113  Identities=15%  Similarity=0.123  Sum_probs=76.5

Q ss_pred             hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCC
Q 021717          119 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLP  197 (308)
Q Consensus       119 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p  197 (308)
                      ..+++|+.|+|++.. ++... ...+..+++|++|+++++.++......+ ..+++|++|+++++ +...... ....++
T Consensus        54 ~~l~~L~~L~L~~N~-i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~  129 (220)
T 2v70_A           54 KKLPQLRKINFSNNK-ITDIE-EGAFEGASGVNEILLTSNRLENVQHKMF-KGLESLKTLMLRSNRITCVGND-SFIGLS  129 (220)
T ss_dssp             GGCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGGG-TTCSSCCEEECTTSCCCCBCTT-SSTTCT
T ss_pred             ccCCCCCEEECCCCc-CCEEC-HHHhCCCCCCCEEECCCCccCccCHhHh-cCCcCCCEEECCCCcCCeECHh-HcCCCc
Confidence            467899999999873 33210 1245678999999999996653222222 35899999999886 3321111 124789


Q ss_pred             CCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          198 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       198 ~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      +|++|+|+++.++... ...+..+++|+.|+++++.-.-
T Consensus       130 ~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          130 SVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             TCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSCCEEC
T ss_pred             cCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCcCCcC
Confidence            9999999988876421 1234568999999999876443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.65  E-value=9.6e-05  Score=69.14  Aligned_cols=65  Identities=12%  Similarity=0.144  Sum_probs=26.8

Q ss_pred             cCCCCCEEEeCCCCCChHHHHHH--HHcCCCCCeeEecCC-CCHHH-HHHHHhcCCCCcEEEeeCCCCC
Q 021717          146 MWRDLESLTMPSIANPPYLMEEI--AQNCRNFRELKIMGP-FDLLF-ASTLNMYLPKLKVLSLRCTTLN  210 (308)
Q Consensus       146 ~~~~L~~L~l~~~~~~~~~l~~l--~~~~~~L~~L~l~~~-~~~~~-~~~l~~~~p~L~~L~L~~~~it  210 (308)
                      .+++|+.|+++++.+.+......  ...+++|+.|+++++ ++.-. .......+++|++|+++++.++
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  400 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH  400 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence            44555555555554443332211  123445555555444 22111 1122234555555555544443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.64  E-value=2.4e-06  Score=67.92  Aligned_cols=109  Identities=15%  Similarity=0.086  Sum_probs=70.9

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCc
Q 021717          122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK  200 (308)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~  200 (308)
                      ++|+.|++++.. ++.. ....+..+++|++|+++++.++..... ....+++|+.|+++++ ++... ......+++|+
T Consensus        28 ~~l~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~  103 (177)
T 2o6r_A           28 SSATRLELESNK-LQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDG-VFDKLTKLTILYLHENKLQSLP-NGVFDKLTQLK  103 (177)
T ss_dssp             TTCSEEECCSSC-CCCC-CTTTTTTCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred             CCCcEEEeCCCc-ccEe-CHHHhcCcccccEEECCCCcceEeChh-HccCCCccCEEECCCCCccccC-HHHhhCCcccC
Confidence            578888888763 3211 112346788999999998865522111 1235789999999876 33111 11234789999


Q ss_pred             EEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021717          201 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  235 (308)
Q Consensus       201 ~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i  235 (308)
                      +|+++++.++... ..++..+++|++|+++++.-.
T Consensus       104 ~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          104 ELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             EEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBC
T ss_pred             EEECcCCcceEeC-HHHhcCCcccCEEEecCCCee
Confidence            9999988876221 133466899999999987643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.64  E-value=2.8e-06  Score=74.18  Aligned_cols=107  Identities=14%  Similarity=0.051  Sum_probs=50.7

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCC
Q 021717          121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL  199 (308)
Q Consensus       121 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L  199 (308)
                      +++|+.|+++++ .++......+...+++|++|+++++.++..  .... .+++|+.|+++++ ++.-. .. ...+++|
T Consensus       143 l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~-~l~~L~~L~Ls~N~l~~l~-~~-~~~l~~L  216 (317)
T 3o53_A          143 RSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQV-VFAKLKTLDLSSNKLAFMG-PE-FQSAAGV  216 (317)
T ss_dssp             GSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCC-CCTTCCEEECCSSCCCEEC-GG-GGGGTTC
T ss_pred             cCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCccc--cccc-ccccCCEEECCCCcCCcch-hh-hcccCcc
Confidence            455666666554 222211122233455666666666544321  0001 2456666666554 22100 01 2356666


Q ss_pred             cEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021717          200 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  235 (308)
Q Consensus       200 ~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i  235 (308)
                      ++|+++++.++.  +...+..+++|+.|+++++...
T Consensus       217 ~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          217 TWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             SEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCB
T ss_pred             cEEECcCCcccc--hhhHhhcCCCCCEEEccCCCcc
Confidence            666666666552  2222344566666666665533

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.63  E-value=3.4e-06  Score=68.79  Aligned_cols=110  Identities=16%  Similarity=0.091  Sum_probs=74.6

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCC
Q 021717          121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL  199 (308)
Q Consensus       121 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L  199 (308)
                      .++|+.|+++++. ++.. ....+..+++|++|+++++.+..... .....+++|++|+++++ ++.- .......+++|
T Consensus        27 ~~~l~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L  102 (208)
T 2o6s_A           27 PAQTTYLDLETNS-LKSL-PNGVFDELTSLTQLYLGGNKLQSLPN-GVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQL  102 (208)
T ss_dssp             CTTCSEEECCSSC-CCCC-CTTTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred             CCCCcEEEcCCCc-cCcC-ChhhhcccccCcEEECCCCccCccCh-hhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCC
Confidence            4689999999873 3321 12235688999999999996652211 12235899999999876 3311 11223578999


Q ss_pred             cEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021717          200 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  235 (308)
Q Consensus       200 ~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i  235 (308)
                      ++|+++++.++... ...+..+++|++|+++++...
T Consensus       103 ~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A          103 KELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             CEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCS
T ss_pred             CEEEcCCCcCcccC-HhHhccCCcCCEEECCCCccc
Confidence            99999988876321 123467899999999998543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.63  E-value=3.9e-07  Score=86.67  Aligned_cols=87  Identities=22%  Similarity=0.194  Sum_probs=42.4

Q ss_pred             cCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCC
Q 021717          146 MWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNL  224 (308)
Q Consensus       146 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L  224 (308)
                      .+++|+.|++++|.+.......+ ..+++|++|+++++ +.+.........+++|+.|+++++.++... ...+..+++|
T Consensus       422 ~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L  499 (606)
T 3vq2_A          422 SLEKLLYLDISYTNTKIDFDGIF-LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS-WGVFDTLHRL  499 (606)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTC
T ss_pred             ccccCCEEECcCCCCCccchhhh-cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccC-hhhhcccccC
Confidence            44555555555543322111111 23555666666554 222111112235677777777766665321 1223456777


Q ss_pred             CEEecccCCC
Q 021717          225 EVLNISHCLL  234 (308)
Q Consensus       225 ~~L~l~~C~~  234 (308)
                      ++|++++|..
T Consensus       500 ~~L~Ls~N~l  509 (606)
T 3vq2_A          500 QLLNMSHNNL  509 (606)
T ss_dssp             CEEECCSSCC
T ss_pred             CEEECCCCcC
Confidence            7777777743

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.63  E-value=9.5e-07  Score=77.20  Aligned_cols=132  Identities=14%  Similarity=0.098  Sum_probs=91.8

Q ss_pred             CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCC
Q 021717           96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF  175 (308)
Q Consensus        96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L  175 (308)
                      ..++.+.+..+. ++......+...+++|+.|+++++. ++..   .....+++|++|+++++.++.-.. . ...+++|
T Consensus       144 ~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~---~~~~~l~~L~~L~Ls~N~l~~l~~-~-~~~l~~L  216 (317)
T 3o53_A          144 SRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDV---KGQVVFAKLKTLDLSSNKLAFMGP-E-FQSAAGV  216 (317)
T ss_dssp             SSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-CCEE---ECCCCCTTCCEEECCSSCCCEECG-G-GGGGTTC
T ss_pred             CCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCc-Cccc---ccccccccCCEEECCCCcCCcchh-h-hcccCcc
Confidence            467777776543 2222223344567999999999874 3321   112258999999999997653211 1 2357999


Q ss_pred             CeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          176 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       176 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      +.|+++++ ++.  +......+++|+.|+++++.++...+...+..+++|+.|++.++..++
T Consensus       217 ~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~  276 (317)
T 3o53_A          217 TWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT  276 (317)
T ss_dssp             SEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             cEEECcCCcccc--hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence            99999987 431  111235789999999999999977888888899999999998766554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.62  E-value=6.8e-06  Score=68.25  Aligned_cols=108  Identities=19%  Similarity=0.136  Sum_probs=73.8

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCc
Q 021717          122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK  200 (308)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~  200 (308)
                      ++|+.|+|+++. ++.. ....+..+++|++|+++++.+..-.. .....+++|+.|+++++ ++.-. ......+++|+
T Consensus        40 ~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~L~~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~  115 (229)
T 3e6j_A           40 TNAQILYLHDNQ-ITKL-EPGVFDSLINLKELYLGSNQLGALPV-GVFDSLTQLTVLDLGTNQLTVLP-SAVFDRLVHLK  115 (229)
T ss_dssp             TTCSEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred             CCCCEEEcCCCc-cCcc-CHHHhhCccCCcEEECCCCCCCCcCh-hhcccCCCcCEEECCCCcCCccC-hhHhCcchhhC
Confidence            789999999873 3221 12335678999999999996542211 11235789999999886 33111 12234789999


Q ss_pred             EEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021717          201 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  235 (308)
Q Consensus       201 ~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i  235 (308)
                      .|+|+++.++  .+..-+..+++|+.|+++++..-
T Consensus       116 ~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A          116 ELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             EEECCSSCCC--SCCTTGGGCTTCSEEECCSSCCC
T ss_pred             eEeccCCccc--ccCcccccCCCCCEEECCCCcCC
Confidence            9999988887  33333467899999999988543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.61  E-value=3.3e-06  Score=69.79  Aligned_cols=111  Identities=17%  Similarity=0.155  Sum_probs=72.9

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      .+++|+.|+|+++. ++.. ....+..+++|+.|+++++.++.-. ..+...+++|+.|+++++ +..... .....+++
T Consensus        54 ~l~~L~~L~Ls~N~-i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~  129 (220)
T 2v9t_B           54 PYKKLRRIDLSNNQ-ISEL-APDAFQGLRSLNSLVLYGNKITELP-KSLFEGLFSLQLLLLNANKINCLRV-DAFQDLHN  129 (220)
T ss_dssp             TCTTCCEEECCSSC-CCEE-CTTTTTTCSSCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTT
T ss_pred             CCCCCCEEECCCCc-CCCc-CHHHhhCCcCCCEEECCCCcCCccC-HhHccCCCCCCEEECCCCCCCEeCH-HHcCCCCC
Confidence            46889999999873 3221 1233567899999999998655211 112235789999999876 322111 12347899


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  235 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i  235 (308)
                      |++|+|+++.++...- ..+..+++|+.|++++..-.
T Consensus       130 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          130 LNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCEE
T ss_pred             CCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCCcC
Confidence            9999999887764321 23456889999999886543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.61  E-value=3.7e-07  Score=79.73  Aligned_cols=110  Identities=14%  Similarity=0.093  Sum_probs=48.6

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      ..++|+.|+++++..++.. +...+..+++|++|+++++.++......+. .+++|++|+++++ +..... .....+++
T Consensus        74 ~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~  150 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLP-PSISSLPN  150 (313)
T ss_dssp             GCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGG-GCTTCCEEECCSSEEESCCC-GGGGGCTT
T ss_pred             CCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHh-CCCCCCEEeCCCCccCCcCC-hHHhcCCC
Confidence            4566666666631122110 112234566666666666544322222222 3566666666554 211000 11234566


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCC-CCCEEecccCC
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQ-NLEVLNISHCL  233 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p-~L~~L~l~~C~  233 (308)
                      |++|+++++.++.... .-+..++ +|++|+++++.
T Consensus       151 L~~L~L~~N~l~~~~p-~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          151 LVGITFDGNRISGAIP-DSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             CCEEECCSSCCEEECC-GGGGCCCTTCCEEECCSSE
T ss_pred             CCeEECcCCcccCcCC-HHHhhhhhcCcEEECcCCe
Confidence            6666666555432111 1122333 55566555543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.61  E-value=4e-06  Score=71.43  Aligned_cols=133  Identities=16%  Similarity=0.071  Sum_probs=73.9

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  174 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~  174 (308)
                      ...++.+.+..+...  .....+...+++|++|+++++. ++... ...+..+++|++|+++++.++......+ ..+++
T Consensus        60 l~~L~~L~l~~n~l~--~i~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~  134 (270)
T 2o6q_A           60 LTKLRLLYLNDNKLQ--TLPAGIFKELKNLETLWVTDNK-LQALP-IGVFDQLVNLAELRLDRNQLKSLPPRVF-DSLTK  134 (270)
T ss_dssp             CTTCCEEECCSSCCS--CCCTTTTSSCTTCCEEECCSSC-CCCCC-TTTTTTCSSCCEEECCSSCCCCCCTTTT-TTCTT
T ss_pred             CCCCCEEECCCCccC--eeChhhhcCCCCCCEEECCCCc-CCcCC-HhHcccccCCCEEECCCCccCeeCHHHh-CcCcC
Confidence            345666766554211  0001112346778888887653 22110 1234567788888888775442221112 24678


Q ss_pred             CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCC
Q 021717          175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  234 (308)
Q Consensus       175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~  234 (308)
                      |++|+++++ ++... ......+++|++|+|+++.++.... ..+..+++|++|+++++..
T Consensus       135 L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l  193 (270)
T 2o6q_A          135 LTYLSLGYNELQSLP-KGVFDKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQL  193 (270)
T ss_dssp             CCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCC
T ss_pred             CCEEECCCCcCCccC-HhHccCCcccceeEecCCcCcEeCh-hHhccCCCcCEEECCCCcC
Confidence            888888776 32111 1123467888888888776653221 1235678888888888753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.59  E-value=2.2e-05  Score=75.22  Aligned_cols=111  Identities=12%  Similarity=0.130  Sum_probs=60.9

Q ss_pred             hCCCCcEEEcCCCCCCCHH----------------HHHHHHh--cCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEec
Q 021717          120 RCPQLKRLVMPAWNRIKKT----------------GICKAIR--MWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIM  181 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~----------------~l~~~~~--~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~  181 (308)
                      .+++|++|+|+++. ++..                .+...+.  .+++|++|++++|.+.......+. .+++|++|+++
T Consensus       204 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls  281 (636)
T 4eco_A          204 RLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVA  281 (636)
T ss_dssp             GCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECT
T ss_pred             cccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECc
Confidence            46677777777663 3331                0223333  667777777777644332222222 36677777776


Q ss_pred             CC--CCH-HHHHHHH-----hcCCCCcEEEeeCCCCCHHHHHH--HHHcCCCCCEEecccCCC
Q 021717          182 GP--FDL-LFASTLN-----MYLPKLKVLSLRCTTLNRDALIL--ILDGLQNLEVLNISHCLL  234 (308)
Q Consensus       182 ~~--~~~-~~~~~l~-----~~~p~L~~L~L~~~~it~~~l~~--l~~~~p~L~~L~l~~C~~  234 (308)
                      ++  ++. .....+.     ..+++|++|+++++.++  .+..  .+..+++|++|++++|..
T Consensus       282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l  342 (636)
T 4eco_A          282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQL  342 (636)
T ss_dssp             TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCC
T ss_pred             CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcC
Confidence            65  444 2222222     12467777777766665  3333  455667777777776653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.59  E-value=7.2e-05  Score=63.51  Aligned_cols=83  Identities=22%  Similarity=0.118  Sum_probs=56.7

Q ss_pred             hcCCCCCEEEeCCCCCCh-HHHHHHHHcCCCCCeeEecCC-CCHH-HHHHHHhcCCCCcEEEeeCCCCCH------HHHH
Q 021717          145 RMWRDLESLTMPSIANPP-YLMEEIAQNCRNFRELKIMGP-FDLL-FASTLNMYLPKLKVLSLRCTTLNR------DALI  215 (308)
Q Consensus       145 ~~~~~L~~L~l~~~~~~~-~~l~~l~~~~~~L~~L~l~~~-~~~~-~~~~l~~~~p~L~~L~L~~~~it~------~~l~  215 (308)
                      ..+|+|++|+|+++.++. ..+..+...+|+|+.|+|+++ +.+. .+.. ...+ +|+.|+|.+|.++.      .-..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~-l~~l-~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGL-KLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG-GTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh-cccC-CcceEEccCCcCccccCcchhHHH
Confidence            578899999999987653 123333446899999999876 4432 2222 2233 89999999888763      2334


Q ss_pred             HHHHcCCCCCEEec
Q 021717          216 LILDGLQNLEVLNI  229 (308)
Q Consensus       216 ~l~~~~p~L~~L~l  229 (308)
                      .++..+|+|+.||=
T Consensus       245 ~il~~~P~L~~LDg  258 (267)
T 3rw6_A          245 AIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHCTTCCEESS
T ss_pred             HHHHHCcccCeECC
Confidence            67778999998874

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.58  E-value=5.4e-06  Score=70.59  Aligned_cols=134  Identities=16%  Similarity=0.093  Sum_probs=86.1

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  174 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~  174 (308)
                      ...++.+.+..+....-  .......+++|+.|+++++. ++... ...+..+++|++|+++++.+.......+ ..+++
T Consensus        84 l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~  158 (270)
T 2o6q_A           84 LKNLETLWVTDNKLQAL--PIGVFDQLVNLAELRLDRNQ-LKSLP-PRVFDSLTKLTYLSLGYNELQSLPKGVF-DKLTS  158 (270)
T ss_dssp             CTTCCEEECCSSCCCCC--CTTTTTTCSSCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTT
T ss_pred             CCCCCEEECCCCcCCcC--CHhHcccccCCCEEECCCCc-cCeeC-HHHhCcCcCCCEEECCCCcCCccCHhHc-cCCcc
Confidence            45678888766532210  01122457899999999863 32211 1234678999999999996653222122 35799


Q ss_pred             CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021717          175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  235 (308)
Q Consensus       175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i  235 (308)
                      |+.|+++++ ++.... .....+++|++|+|+++.++... ...+..+++|+.|+++++.-.
T Consensus       159 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          159 LKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLKRVP-EGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBC
T ss_pred             cceeEecCCcCcEeCh-hHhccCCCcCEEECCCCcCCcCC-HHHhccccCCCEEEecCCCee
Confidence            999999886 332111 12347899999999988876322 123467899999999987643

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.58  E-value=1.9e-06  Score=84.51  Aligned_cols=37  Identities=16%  Similarity=0.232  Sum_probs=17.4

Q ss_pred             hcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecC
Q 021717          145 RMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMG  182 (308)
Q Consensus       145 ~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~  182 (308)
                      ..+++|++|+++++.++......+. .+++|++|++++
T Consensus       220 ~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~  256 (768)
T 3rgz_A          220 GDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISS  256 (768)
T ss_dssp             TTCCSCCEEECCSSCCCSCHHHHTT-TCSSCCEEECCS
T ss_pred             ccCCCCCEEECcCCcCCCcccHHHh-cCCCCCEEECCC
Confidence            3455555555555544433333332 345555555544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.56  E-value=1.5e-06  Score=70.23  Aligned_cols=109  Identities=13%  Similarity=0.084  Sum_probs=69.0

Q ss_pred             CCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcE
Q 021717          123 QLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKV  201 (308)
Q Consensus       123 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~  201 (308)
                      +|+.|++++. .++.......+..+++|+.|+++++.++......+. .+++|++|+++++ +..... .....+++|++
T Consensus        30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~  106 (192)
T 1w8a_A           30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE-GASHIQELQLGENKIKEISN-KMFLGLHQLKT  106 (192)
T ss_dssp             TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSCCCCEECS-SSSTTCTTCCE
T ss_pred             CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC-CcccCCEEECCCCcCCccCH-HHhcCCCCCCE
Confidence            7888888876 232211111356788899999988866532222222 4788999999876 321111 11246899999


Q ss_pred             EEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021717          202 LSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  235 (308)
Q Consensus       202 L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i  235 (308)
                      |+|+++.++... ...+..+++|++|++++..-.
T Consensus       107 L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          107 LNLYDNQISCVM-PGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             EECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBC
T ss_pred             EECCCCcCCeeC-HHHhhcCCCCCEEEeCCCCcc
Confidence            999988876421 123456889999999887644

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.56  E-value=1.1e-06  Score=83.46  Aligned_cols=38  Identities=21%  Similarity=0.280  Sum_probs=18.3

Q ss_pred             cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      .+++|+.|+++++.++.... ..+..+++|++|+++++.
T Consensus       474 ~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~  511 (606)
T 3t6q_A          474 TLGRLEILVLSFCDLSSIDQ-HAFTSLKMMNHVDLSHNR  511 (606)
T ss_dssp             GCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSC
T ss_pred             cCCCccEEECCCCccCccCh-hhhccccCCCEEECCCCc
Confidence            45555555555544442111 122345566666666554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.56  E-value=6.2e-06  Score=77.78  Aligned_cols=135  Identities=19%  Similarity=0.184  Sum_probs=81.6

Q ss_pred             cCCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCC
Q 021717           94 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR  173 (308)
Q Consensus        94 s~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~  173 (308)
                      ....++.+.+..+.. ++.... ....+++|+.|+++++.......+...+..+++|+.|+++++.++..........++
T Consensus       351 ~l~~L~~L~l~~n~l-~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          351 SPSSFTFLNFTQNVF-TDSVFQ-GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             SCCCCCEEECCSSCC-CTTTTT-TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             CCCCceEEECCCCcc-ccchhh-hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            346788888876543 221111 124578899999998733322334455678899999999988654311111223467


Q ss_pred             CCCeeEecCC-CCHHHHHHHHhcC-CCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          174 NFRELKIMGP-FDLLFASTLNMYL-PKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       174 ~L~~L~l~~~-~~~~~~~~l~~~~-p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      +|+.|+++++ +++.    +...+ ++|+.|+++++.++  .+..-+..+++|++|+++++...+
T Consensus       429 ~L~~L~l~~n~l~~~----~~~~l~~~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~  487 (562)
T 3a79_B          429 SILVLNLSSNMLTGS----VFRCLPPKVKVLDLHNNRIM--SIPKDVTHLQALQELNVASNQLKS  487 (562)
T ss_dssp             TCCEEECCSSCCCGG----GGSSCCTTCSEEECCSSCCC--CCCTTTTSSCCCSEEECCSSCCCC
T ss_pred             cCCEEECCCCCCCcc----hhhhhcCcCCEEECCCCcCc--ccChhhcCCCCCCEEECCCCCCCC
Confidence            8888888776 4431    22334 57888888877766  222222367788888887775443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.55  E-value=3.4e-06  Score=72.78  Aligned_cols=108  Identities=21%  Similarity=0.234  Sum_probs=51.8

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      ..++|+.|++++. .++  .+...+..+++|+.|+++++.++.-....+ ..+++|+.|.++++ ++.- .......+++
T Consensus        75 ~l~~L~~L~Ls~N-~l~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~  149 (290)
T 1p9a_G           75 TLPVLGTLDLSHN-QLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGELQELYLKGNELKTL-PPGLLTPTPK  149 (290)
T ss_dssp             CCTTCCEEECCSS-CCS--SCCCCTTTCTTCCEEECCSSCCCCCCSSTT-TTCTTCCEEECTTSCCCCC-CTTTTTTCTT
T ss_pred             CCCcCCEEECCCC-cCC--cCchhhccCCCCCEEECCCCcCcccCHHHH-cCCCCCCEEECCCCCCCcc-ChhhcccccC
Confidence            4566666666654 222  112223456666666666664432111111 23566666666654 2210 0111235566


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      |+.|+|+++.++.-. ..++..+++|+.|+++++.
T Consensus       150 L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          150 LEKLSLANNNLTELP-AGLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             CCEEECTTSCCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred             CCEEECCCCcCCccC-HHHhcCcCCCCEEECCCCc
Confidence            666666665554211 1223445666666666554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.54  E-value=1.4e-05  Score=76.00  Aligned_cols=105  Identities=18%  Similarity=0.199  Sum_probs=62.7

Q ss_pred             CCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcE
Q 021717          123 QLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKV  201 (308)
Q Consensus       123 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~  201 (308)
                      +|+.|+|+++. +++.   ..+..+++|+.|+++++.+.......+. .+++|+.|+++++ ++.-  ......+|+|+.
T Consensus       233 ~L~~L~L~~n~-l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~  305 (597)
T 3oja_B          233 ELTILKLQHNN-LTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNRLVAL--NLYGQPIPTLKV  305 (597)
T ss_dssp             CCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECTTSCCCEE--ECSSSCCTTCCE
T ss_pred             CCCEEECCCCC-CCCC---hhhccCCCCCEEECCCCccCCCCHHHhc-CccCCCEEECCCCCCCCC--CcccccCCCCcE
Confidence            45566666552 2221   3456778888888888766543323333 4678888888765 3210  011235788888


Q ss_pred             EEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          202 LSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       202 L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      |+|+++.++.  +..-+..+++|+.|++++|...+
T Consensus       306 L~Ls~N~l~~--i~~~~~~l~~L~~L~L~~N~l~~  338 (597)
T 3oja_B          306 LDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVT  338 (597)
T ss_dssp             EECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCC
T ss_pred             EECCCCCCCc--cCcccccCCCCCEEECCCCCCCC
Confidence            8888777662  22233557788888888776544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.54  E-value=3.6e-05  Score=70.27  Aligned_cols=134  Identities=13%  Similarity=0.117  Sum_probs=71.3

Q ss_pred             CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHH-HHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021717           96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGIC-KAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  174 (308)
Q Consensus        96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~  174 (308)
                      ..++.+.+..+... ... ......+++|++|+++++ .++..... ..+..+++|++|+++++.+.......+...+++
T Consensus        79 ~~L~~L~Ls~n~l~-~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  155 (455)
T 3v47_A           79 SSLIILKLDYNQFL-QLE-TGAFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR  155 (455)
T ss_dssp             TTCCEEECTTCTTC-EEC-TTTTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred             ccCCEEeCCCCccC-ccC-hhhccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence            45666766654321 100 011134677888888776 34332111 225667788888888775543322222345778


Q ss_pred             CCeeEecCC-CC---HHHHHHH------------------------------HhcCCCCcEEEeeCCCCCHHHHHHHHHc
Q 021717          175 FRELKIMGP-FD---LLFASTL------------------------------NMYLPKLKVLSLRCTTLNRDALILILDG  220 (308)
Q Consensus       175 L~~L~l~~~-~~---~~~~~~l------------------------------~~~~p~L~~L~L~~~~it~~~l~~l~~~  220 (308)
                      |++|+++++ +.   ...+..+                              ...+++|++|+++++.++......+...
T Consensus       156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~  235 (455)
T 3v47_A          156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA  235 (455)
T ss_dssp             CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred             ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence            888888764 21   1111000                              1134788999999888887666555443


Q ss_pred             --CCCCCEEecccC
Q 021717          221 --LQNLEVLNISHC  232 (308)
Q Consensus       221 --~p~L~~L~l~~C  232 (308)
                        .++|+.|++++|
T Consensus       236 ~~~~~L~~L~l~~~  249 (455)
T 3v47_A          236 IAGTKIQSLILSNS  249 (455)
T ss_dssp             TTTCCEEEEECTTC
T ss_pred             ccccceeeEeeccc
Confidence              234444444433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.54  E-value=4.1e-05  Score=70.37  Aligned_cols=116  Identities=17%  Similarity=0.076  Sum_probs=60.2

Q ss_pred             CccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCC
Q 021717           97 SIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFR  176 (308)
Q Consensus        97 ~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~  176 (308)
                      .++.+.+..+....-   .. ...+++|+.|+++++. ++..    .+..+++|++|+++++.++...   + ..+++|+
T Consensus        43 ~L~~L~Ls~n~l~~~---~~-l~~l~~L~~L~Ls~n~-l~~~----~~~~l~~L~~L~Ls~N~l~~~~---~-~~l~~L~  109 (457)
T 3bz5_A           43 TLTSLDCHNSSITDM---TG-IEKLTGLTKLICTSNN-ITTL----DLSQNTNLTYLACDSNKLTNLD---V-TPLTKLT  109 (457)
T ss_dssp             TCCEEECCSSCCCCC---TT-GGGCTTCSEEECCSSC-CSCC----CCTTCTTCSEEECCSSCCSCCC---C-TTCTTCC
T ss_pred             CCCEEEccCCCcccC---hh-hcccCCCCEEEccCCc-CCeE----ccccCCCCCEEECcCCCCceee---c-CCCCcCC
Confidence            455666554432211   11 2346677777777652 3321    1456667777777766544321   2 2466677


Q ss_pred             eeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          177 ELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       177 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      +|+++++ ++.-   . ...+++|++|+++++.++...    +..+++|++|++++|.
T Consensus       110 ~L~L~~N~l~~l---~-~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~  159 (457)
T 3bz5_A          110 YLNCDTNKLTKL---D-VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNK  159 (457)
T ss_dssp             EEECCSSCCSCC---C-CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCS
T ss_pred             EEECCCCcCCee---c-CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCC
Confidence            7777655 2221   1 235666666666665554421    3345566666666554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.54  E-value=2.6e-05  Score=77.20  Aligned_cols=36  Identities=17%  Similarity=0.092  Sum_probs=16.8

Q ss_pred             cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      .+++|+.|+|+++.++  .+. .+..+++|+.|+++++.
T Consensus       571 ~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~Ls~N~  606 (876)
T 4ecn_A          571 KMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKLDYNQ  606 (876)
T ss_dssp             TCTTCCEEECTTSCCC--BCC-CCCTTSEESEEECCSSC
T ss_pred             cCCCCCEEECCCCCcc--cch-hhcCCCcceEEECcCCc
Confidence            4555555555544444  222 22334555555555544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.54  E-value=1.2e-05  Score=75.82  Aligned_cols=110  Identities=11%  Similarity=0.157  Sum_probs=73.6

Q ss_pred             hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChH-HHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcC
Q 021717          119 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPY-LMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYL  196 (308)
Q Consensus       119 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~  196 (308)
                      ..+++|+.|+++++ .+++. ....+..+++|+.|+++++.++.- .+......+++|+.|+++++ +...........+
T Consensus       350 ~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l  427 (562)
T 3a79_B          350 PSPSSFTFLNFTQN-VFTDS-VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA  427 (562)
T ss_dssp             SSCCCCCEEECCSS-CCCTT-TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC
T ss_pred             cCCCCceEEECCCC-ccccc-hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc
Confidence            46789999999987 34331 223446789999999999877641 22222345789999999876 3321111123467


Q ss_pred             CCCcEEEeeCCCCCHHHHHHHHHcC-CCCCEEecccCCC
Q 021717          197 PKLKVLSLRCTTLNRDALILILDGL-QNLEVLNISHCLL  234 (308)
Q Consensus       197 p~L~~L~L~~~~it~~~l~~l~~~~-p~L~~L~l~~C~~  234 (308)
                      ++|+.|+++++.++...    .... ++|+.|++++|..
T Consensus       428 ~~L~~L~l~~n~l~~~~----~~~l~~~L~~L~L~~N~l  462 (562)
T 3a79_B          428 ESILVLNLSSNMLTGSV----FRCLPPKVKVLDLHNNRI  462 (562)
T ss_dssp             TTCCEEECCSSCCCGGG----GSSCCTTCSEEECCSSCC
T ss_pred             ccCCEEECCCCCCCcch----hhhhcCcCCEEECCCCcC
Confidence            89999999988887532    2334 6899999998853

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.53  E-value=2.1e-06  Score=85.00  Aligned_cols=110  Identities=14%  Similarity=0.101  Sum_probs=44.9

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHH-HHHcCCCCCeeEecCC-CCHHHHHHHHhcCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEE-IAQNCRNFRELKIMGP-FDLLFASTLNMYLP  197 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~-l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p  197 (308)
                      .+++|+.|+|+++. ++.. ....+..+++|++|++++|.+++..... ....+++|++|+++++ +...........++
T Consensus        71 ~L~~L~~L~Ls~N~-l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~  148 (844)
T 3j0a_A           71 NLPNLRILDLGSSK-IYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN  148 (844)
T ss_dssp             SCTTCCEEECTTCC-CCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS
T ss_pred             CCCCCCEEECCCCc-Cccc-CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC
Confidence            34555555555442 2110 0122334555555555555443221111 0113455555555544 22111101123455


Q ss_pred             CCcEEEeeCCCCCH---HHHHHHHHcCCCCCEEecccCC
Q 021717          198 KLKVLSLRCTTLNR---DALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       198 ~L~~L~L~~~~it~---~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      +|++|+|+++.++.   ..+..+..  ++|+.|+++++.
T Consensus       149 ~L~~L~Ls~N~i~~~~~~~l~~l~~--~~L~~L~L~~n~  185 (844)
T 3j0a_A          149 SLKSIDFSSNQIFLVCEHELEPLQG--KTLSFFSLAANS  185 (844)
T ss_dssp             SCCEEEEESSCCCCCCSGGGHHHHH--CSSCCCEECCSB
T ss_pred             CCCEEECCCCcCCeeCHHHcccccC--CccceEECCCCc
Confidence            55555555544432   22222111  455555555544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.52  E-value=1.2e-05  Score=79.54  Aligned_cols=130  Identities=12%  Similarity=0.012  Sum_probs=73.3

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHH-------hcCCCCCEEEeCCCCCChHHHH-
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAI-------RMWRDLESLTMPSIANPPYLME-  166 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~-------~~~~~L~~L~l~~~~~~~~~l~-  166 (308)
                      ...++.+.+..+.....  +......+++|+.|+|+++..++...+...+       ..+++|+.|+++++.++ .... 
T Consensus       490 L~~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~  566 (876)
T 4ecn_A          490 LKDLTDVELYNCPNMTQ--LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPAS  566 (876)
T ss_dssp             CTTCCEEEEESCTTCCS--CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCH
T ss_pred             CCCCCEEECcCCCCCcc--ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCCh
Confidence            35677777766542211  1112235778888888877435542222222       34558888888888655 2211 


Q ss_pred             -HHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCC-CCEEecccCC
Q 021717          167 -EIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQN-LEVLNISHCL  233 (308)
Q Consensus       167 -~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~-L~~L~l~~C~  233 (308)
                       .+. .+++|+.|+++++ ++  .+. ....+++|+.|+|+++.++  .+..-+..+++ |+.|++++|.
T Consensus       567 ~~l~-~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          567 ASLQ-KMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNK  630 (876)
T ss_dssp             HHHT-TCTTCCEEECTTSCCC--BCC-CCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSC
T ss_pred             hhhh-cCCCCCEEECCCCCcc--cch-hhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCC
Confidence             233 4778888888765 33  111 2235677777777766665  23333445566 7777776665

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.51  E-value=6.7e-06  Score=73.79  Aligned_cols=105  Identities=15%  Similarity=0.066  Sum_probs=49.4

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      .+++|+.|+++++. ++.. ....+..+++|++|+++++.+..- ...+...+++|++|+++++ +..... .....+++
T Consensus        91 ~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~  166 (390)
T 3o6n_A           91 YAHTIQKLYMGFNA-IRYL-PPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTS  166 (390)
T ss_dssp             TCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCBCCT-TTTSSCTT
T ss_pred             CCCCcCEEECCCCC-CCcC-CHHHhcCCCCCCEEECCCCccCcC-CHHHhcCCCCCcEEECCCCccCccCh-hhccCCCC
Confidence            35566666666542 2110 012234556666666666644311 1111123566666666654 221100 11235666


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccC
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHC  232 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C  232 (308)
                      |++|+++++.++...    +..+++|+.|+++++
T Consensus       167 L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          167 LQNLQLSSNRLTHVD----LSLIPSLFHANVSYN  196 (390)
T ss_dssp             CCEEECCSSCCSBCC----GGGCTTCSEEECCSS
T ss_pred             CCEEECCCCcCCccc----cccccccceeecccc
Confidence            666666666555432    233555555555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.50  E-value=1.8e-05  Score=74.73  Aligned_cols=80  Identities=15%  Similarity=0.098  Sum_probs=52.5

Q ss_pred             CCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEE
Q 021717          149 DLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVL  227 (308)
Q Consensus       149 ~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L  227 (308)
                      .|+.|+++++.++.  +..+ ..+++|+.|+++++ ++ . +......+++|+.|+|++|.++.  +. -+..+++|+.|
T Consensus       442 ~L~~L~Ls~n~l~~--lp~~-~~l~~L~~L~Ls~N~l~-~-lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L  513 (567)
T 1dce_A          442 DVRVLHLAHKDLTV--LCHL-EQLLLVTHLDLSHNRLR-A-LPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQEL  513 (567)
T ss_dssp             TCSEEECTTSCCSS--CCCG-GGGTTCCEEECCSSCCC-C-CCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEE
T ss_pred             CceEEEecCCCCCC--CcCc-cccccCcEeecCccccc-c-cchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEE
Confidence            68888888886543  2222 34778888888876 33 1 11123478888888888887764  33 34568888888


Q ss_pred             ecccCCCcC
Q 021717          228 NISHCLLID  236 (308)
Q Consensus       228 ~l~~C~~i~  236 (308)
                      +++++...+
T Consensus       514 ~Ls~N~l~~  522 (567)
T 1dce_A          514 LLCNNRLQQ  522 (567)
T ss_dssp             ECCSSCCCS
T ss_pred             ECCCCCCCC
Confidence            888875433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.49  E-value=5.8e-06  Score=68.25  Aligned_cols=111  Identities=16%  Similarity=0.202  Sum_probs=75.4

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCc
Q 021717          122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK  200 (308)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~  200 (308)
                      ++|+.|++++. .++... ...+..+++|+.|+++++.++......+. .+++|++|+++++ ++. ........+++|+
T Consensus        32 ~~l~~L~l~~n-~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~  107 (220)
T 2v9t_B           32 ETITEIRLEQN-TIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQ-GLRSLNSLVLYGNKITE-LPKSLFEGLFSLQ  107 (220)
T ss_dssp             TTCCEEECCSS-CCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTT-TCSSCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred             cCCCEEECCCC-cCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhh-CCcCCCEEECCCCcCCc-cCHhHccCCCCCC
Confidence            57899999876 332210 12346789999999999976533222333 5799999999987 331 1112235789999


Q ss_pred             EEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcCC
Q 021717          201 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV  237 (308)
Q Consensus       201 ~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~  237 (308)
                      .|+|+++.++.... ..+..+++|++|+++++...+.
T Consensus       108 ~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~  143 (220)
T 2v9t_B          108 LLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTI  143 (220)
T ss_dssp             EEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCC
T ss_pred             EEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEE
Confidence            99999888764321 2345789999999999875443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.49  E-value=3.3e-06  Score=69.75  Aligned_cols=111  Identities=11%  Similarity=0.084  Sum_probs=74.0

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCc
Q 021717          122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK  200 (308)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~  200 (308)
                      +.++.|+|++. .++...-...+..+++|+.|+++++.++.-.-..+ ..+++|+.|+++++ ++... ......+++|+
T Consensus        32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~  108 (220)
T 2v70_A           32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF-EGASGVNEILLTSNRLENVQ-HKMFKGLESLK  108 (220)
T ss_dssp             TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCCCC-GGGGTTCSSCC
T ss_pred             CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHh-CCCCCCCEEECCCCccCccC-HhHhcCCcCCC
Confidence            45788888876 33321111235789999999999997653222223 35799999999987 33211 12235799999


Q ss_pred             EEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          201 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       201 ~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      +|+|+++.++...- ..+..+++|++|+++++...+
T Consensus       109 ~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~  143 (220)
T 2v70_A          109 TLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITT  143 (220)
T ss_dssp             EEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCC
T ss_pred             EEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCE
Confidence            99999888764211 224568999999999986444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.49  E-value=1.2e-05  Score=78.70  Aligned_cols=131  Identities=16%  Similarity=0.066  Sum_probs=59.0

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHH--HHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcC
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKT--GICKAIRMWRDLESLTMPSIANPPYLMEEIAQNC  172 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~  172 (308)
                      ...++.+.+..+.... .....+...+++|++|+++++. ++..  .....+..+++|++|+++++.+....-  + ..+
T Consensus       125 l~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~-~~l  199 (768)
T 3rgz_A          125 CSGLKFLNVSSNTLDF-PGKVSGGLKLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGNKISGDVD--V-SRC  199 (768)
T ss_dssp             CTTCCEEECCSSEEEC-CSSCCSCCCCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--C-TTC
T ss_pred             CCCCCEEECcCCccCC-cCCHHHhccCCCCCEEECCCCc-cCCcCChhhhhhccCCCCCEEECCCCcccccCC--c-ccC
Confidence            4567777776542210 0000111345677777777663 3221  111224566666666666653321100  0 245


Q ss_pred             CCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          173 RNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       173 ~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      ++|++|+++++ +.... .. ...+++|++|+++++.++.... ..+..+++|++|++++|.
T Consensus       200 ~~L~~L~Ls~n~l~~~~-~~-l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~  258 (768)
T 3rgz_A          200 VNLEFLDVSSNNFSTGI-PF-LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQ  258 (768)
T ss_dssp             TTCCEEECCSSCCCSCC-CB-CTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECCSSC
T ss_pred             CcCCEEECcCCcCCCCC-cc-cccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECCCCc
Confidence            56666666554 21100 01 2345555555555555543211 223445555555555553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.48  E-value=7.9e-06  Score=71.58  Aligned_cols=59  Identities=10%  Similarity=0.036  Sum_probs=31.3

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHH-HHHHHHcCCCCCeeEecC
Q 021717          122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYL-MEEIAQNCRNFRELKIMG  182 (308)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-l~~l~~~~~~L~~L~l~~  182 (308)
                      ++|+.|+++++. ++.. ....+..+++|+.|+++++.+.... .......+++|+.|++++
T Consensus       121 ~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~  180 (330)
T 1xku_A          121 KTLQELRVHENE-ITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD  180 (330)
T ss_dssp             TTCCEEECCSSC-CCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred             ccccEEECCCCc-cccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence            577777777652 2211 1233566777788877777554211 111112355666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.48  E-value=9.2e-06  Score=74.48  Aligned_cols=107  Identities=21%  Similarity=0.211  Sum_probs=47.9

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      .+++|+.|+++++..++... ...+..+++|+.|+++++.+..-  ..+ ..+++|+.|+++++ ++.... .....+++
T Consensus       169 ~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~--~~~-~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~  243 (452)
T 3zyi_A          169 RVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCNIKDM--PNL-TPLVGLEELEMSGNHFPEIRP-GSFHGLSS  243 (452)
T ss_dssp             TCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTSCCSSC--CCC-TTCTTCCEEECTTSCCSEECG-GGGTTCTT
T ss_pred             cCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCCccccc--ccc-cccccccEEECcCCcCcccCc-ccccCccC
Confidence            46777777777654432211 11234566666666666644321  111 23455666666554 221100 11224455


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccC
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHC  232 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C  232 (308)
                      |+.|+|+++.++.... ..+..+++|+.|+|+++
T Consensus       244 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N  276 (452)
T 3zyi_A          244 LKKLWVMNSQVSLIER-NAFDGLASLVELNLAHN  276 (452)
T ss_dssp             CCEEECTTSCCCEECT-TTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCcCceECH-HHhcCCCCCCEEECCCC
Confidence            5555555444432111 11233455555555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.47  E-value=7.6e-06  Score=74.77  Aligned_cols=107  Identities=20%  Similarity=0.200  Sum_probs=48.1

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      .+++|+.|++.++..++... ...+..+++|++|+++++.++.-  ..+ ..+++|+.|+++++ ++.... .....+++
T Consensus       158 ~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~--~~~-~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~  232 (440)
T 3zyj_A          158 RIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCNLREI--PNL-TPLIKLDELDLSGNHLSAIRP-GSFQGLMH  232 (440)
T ss_dssp             TCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSCCSSC--CCC-TTCSSCCEEECTTSCCCEECT-TTTTTCTT
T ss_pred             hCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCcCccc--ccc-CCCcccCEEECCCCccCccCh-hhhccCcc
Confidence            46777777777654332211 11234566677777766643311  111 23556666666554 221100 01124455


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccC
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHC  232 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C  232 (308)
                      |+.|+|+++.++.... ..+..+++|+.|+|+++
T Consensus       233 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N  265 (440)
T 3zyj_A          233 LQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHN  265 (440)
T ss_dssp             CCEEECTTCCCCEECT-TSSTTCTTCCEEECTTS
T ss_pred             CCEEECCCCceeEECh-hhhcCCCCCCEEECCCC
Confidence            5555555444432111 11223445555555444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.46  E-value=6.1e-06  Score=75.69  Aligned_cols=134  Identities=21%  Similarity=0.115  Sum_probs=78.7

Q ss_pred             CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCC
Q 021717           96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF  175 (308)
Q Consensus        96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L  175 (308)
                      ..++.+.+..+... .-. ......+++|+.|+|+++ .++.. ....+..+++|++|+++++.++...... ...+++|
T Consensus        75 ~~l~~L~L~~n~i~-~~~-~~~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L  149 (452)
T 3zyi_A           75 SNTRYLNLMENNIQ-MIQ-ADTFRHLHHLEVLQLGRN-SIRQI-EVGAFNGLASLNTLELFDNWLTVIPSGA-FEYLSKL  149 (452)
T ss_dssp             TTCSEEECCSSCCC-EEC-TTTTTTCTTCCEEECCSS-CCCEE-CTTTTTTCTTCCEEECCSSCCSBCCTTT-SSSCTTC
T ss_pred             CCccEEECcCCcCc-eEC-HHHcCCCCCCCEEECCCC-ccCCc-ChhhccCcccCCEEECCCCcCCccChhh-hcccCCC
Confidence            45677777654321 100 011235788999998876 33221 1123557888999999888654221111 2257889


Q ss_pred             CeeEecCC-CCHHHHHHHHhcCCCCcEEEeeC-CCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          176 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRC-TTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       176 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~-~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      ++|+++++ +..-. ......+++|++|+++. +.++.-. ...+..+++|++|++++|...+
T Consensus       150 ~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          150 RELWLRNNPIESIP-SYAFNRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             CEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTSCCSS
T ss_pred             CEEECCCCCcceeC-HhHHhcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCCcccc
Confidence            99999876 33111 11234788999999985 4443211 1134568899999999886444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.42  E-value=1.6e-05  Score=73.22  Aligned_cols=89  Identities=21%  Similarity=0.156  Sum_probs=40.8

Q ss_pred             hcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCC
Q 021717          145 RMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQN  223 (308)
Q Consensus       145 ~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~  223 (308)
                      ..+++|++|+++++.+.......+. .+++|+.|++.++ ++.... .....+++|+.|+++++.++...- ..+..+++
T Consensus       125 ~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~  201 (477)
T 2id5_A          125 QDLYNLKSLEVGDNDLVYISHRAFS-GLNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRLRHLNINAIRD-YSFKRLYR  201 (477)
T ss_dssp             TTCTTCCEEEECCTTCCEECTTSST-TCTTCCEEEEESCCCSSCCH-HHHTTCTTCCEEEEESCCCCEECT-TCSCSCTT
T ss_pred             cccccCCEEECCCCccceeChhhcc-CCCCCCEEECCCCcCcccCh-hHhcccCCCcEEeCCCCcCcEeCh-hhcccCcc
Confidence            3445555555555433221111111 3455666665554 221111 112356666666666555432111 12344667


Q ss_pred             CCEEecccCCCcC
Q 021717          224 LEVLNISHCLLID  236 (308)
Q Consensus       224 L~~L~l~~C~~i~  236 (308)
                      |++|++++|..++
T Consensus       202 L~~L~l~~~~~~~  214 (477)
T 2id5_A          202 LKVLEISHWPYLD  214 (477)
T ss_dssp             CCEEEEECCTTCC
T ss_pred             cceeeCCCCcccc
Confidence            7777777665443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.42  E-value=7e-06  Score=73.06  Aligned_cols=110  Identities=16%  Similarity=0.111  Sum_probs=55.5

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      .+++|+.|+|+++ .++... ...+..+++|++|+++++.+..-.-..+ ..+++|+.|+++++ +..-.. .....+++
T Consensus        62 ~l~~L~~L~L~~N-~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~  137 (361)
T 2xot_A           62 RLTNLHSLLLSHN-HLNFIS-SEAFVPVPNLRYLDLSSNHLHTLDEFLF-SDLQALEVLLLYNNHIVVVDR-NAFEDMAQ  137 (361)
T ss_dssp             CCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECT-TTTTTCTT
T ss_pred             cccccCEEECCCC-cCCccC-hhhccCCCCCCEEECCCCcCCcCCHHHh-CCCcCCCEEECCCCcccEECH-HHhCCccc
Confidence            4567777777765 222110 1124466777777777775442111111 24567777777665 221101 11235677


Q ss_pred             CcEEEeeCCCCCHHHHHHH--HHcCCCCCEEecccCC
Q 021717          199 LKVLSLRCTTLNRDALILI--LDGLQNLEVLNISHCL  233 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l--~~~~p~L~~L~l~~C~  233 (308)
                      |++|+|+++.++.-....+  ...+++|+.|+|+++.
T Consensus       138 L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A          138 LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             CCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             CCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            7777777666553111110  1346777777777654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.42  E-value=1.1e-05  Score=76.63  Aligned_cols=113  Identities=13%  Similarity=0.067  Sum_probs=76.6

Q ss_pred             hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHH--HHHHcCCCCCeeEecCC-CCHHHHHHHHhc
Q 021717          119 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLME--EIAQNCRNFRELKIMGP-FDLLFASTLNMY  195 (308)
Q Consensus       119 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~--~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~  195 (308)
                      ..+++|+.|+++++. ++.. ....+..+++|++|+++++.+++..+.  .....+++|+.|+++++ ++...... ...
T Consensus       422 ~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~  498 (606)
T 3t6q_A          422 QNLHLLKVLNLSHSL-LDIS-SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA-FTS  498 (606)
T ss_dssp             TTCTTCCEEECTTCC-CBTT-CTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT-TTT
T ss_pred             hCcccCCEEECCCCc-cCCc-CHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh-hcc
Confidence            457899999999873 3221 123456789999999999976542221  11235899999999887 33211112 247


Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          196 LPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       196 ~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      +++|++|+|+++.++..... .+..+++| .|+++++...+
T Consensus       499 l~~L~~L~Ls~N~l~~~~~~-~l~~l~~L-~L~L~~N~l~~  537 (606)
T 3t6q_A          499 LKMMNHVDLSHNRLTSSSIE-ALSHLKGI-YLNLASNHISI  537 (606)
T ss_dssp             CTTCCEEECCSSCCCGGGGG-GGTTCCSC-EEECCSSCCCC
T ss_pred             ccCCCEEECCCCccCcCChh-HhCccccc-EEECcCCcccc
Confidence            89999999999888865432 34568888 99999886443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.41  E-value=8.9e-06  Score=75.44  Aligned_cols=38  Identities=11%  Similarity=0.075  Sum_probs=16.3

Q ss_pred             cCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC
Q 021717          146 MWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP  183 (308)
Q Consensus       146 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~  183 (308)
                      .+++|+.|+++++.++......+...+++|+.|+++++
T Consensus       142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence            34455555555544433222233323444444444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.41  E-value=5.9e-06  Score=70.46  Aligned_cols=110  Identities=18%  Similarity=0.146  Sum_probs=74.3

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCc
Q 021717          122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK  200 (308)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~  200 (308)
                      ++|+.|+++++ .++... ...+..+++|++|+++++.+.......+ ..+++|++|+++++ +..... .....+++|+
T Consensus        28 ~~l~~L~ls~n-~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~  103 (276)
T 2z62_A           28 FSTKNLDLSFN-PLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQ  103 (276)
T ss_dssp             TTCCEEECTTC-CCCEEC-TTTTTTCTTCSEEECTTCCCCEECTTTT-TTCTTCCEEECTTCCCCEECT-TTTTTCTTCC
T ss_pred             CCccEEECCCC-cccccC-HhHhccccCCcEEECCCCcCCccCHHHc-cCCcCCCEEECCCCccCccCh-hhhcCCcccc
Confidence            57999999987 333211 1245678999999999997653222222 35799999999886 332111 1234789999


Q ss_pred             EEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          201 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       201 ~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      +|+++++.++...-. .+..+++|++|+++++...+
T Consensus       104 ~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~  138 (276)
T 2z62_A          104 KLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQS  138 (276)
T ss_dssp             EEECTTSCCCCSTTC-CCTTCTTCCEEECCSSCCCC
T ss_pred             EEECCCCCccccCch-hcccCCCCCEEECcCCccce
Confidence            999998776542211 14578999999999986443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.38  E-value=1.2e-05  Score=78.40  Aligned_cols=107  Identities=20%  Similarity=0.100  Sum_probs=63.1

Q ss_pred             hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCC
Q 021717          119 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLP  197 (308)
Q Consensus       119 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p  197 (308)
                      ...++|+.|+|+++. +.  .+..-+..+++|+.|+|++|.++ ..-..+ ..+++|+.|+|+++ ++ . +..-...++
T Consensus       221 ~~l~~L~~L~Ls~n~-l~--~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls~N~l~-~-lp~~~~~l~  293 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQ-IF--NISANIFKYDFLTRLYLNGNSLT-ELPAEI-KNLSNLRVLDLSHNRLT-S-LPAELGSCF  293 (727)
T ss_dssp             -CCCCCCEEECTTSC-CS--CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG-GGGTTCCEEECTTSCCS-S-CCSSGGGGT
T ss_pred             ccCCCCcEEECCCCC-CC--CCChhhcCCCCCCEEEeeCCcCc-ccChhh-hCCCCCCEEeCcCCcCC-c-cChhhcCCC
Confidence            346778888887763 22  11222336778888888877654 111223 34677888888776 33 1 111124677


Q ss_pred             CCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCC
Q 021717          198 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  234 (308)
Q Consensus       198 ~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~  234 (308)
                      +|++|+|++|.++  .+..-+..+++|+.|+|+++..
T Consensus       294 ~L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          294 QLKYFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             TCSEEECCSSCCC--CCCSSTTSCTTCCCEECTTSCC
T ss_pred             CCCEEECCCCCCC--ccChhhhcCCCccEEeCCCCcc
Confidence            8888888877665  2222245677888888877653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.37  E-value=3.5e-05  Score=73.83  Aligned_cols=93  Identities=14%  Similarity=0.209  Sum_probs=65.6

Q ss_pred             HHHhcCCCCCEEEeCCCCCChH-----------------HHHHHH-HcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEE
Q 021717          142 KAIRMWRDLESLTMPSIANPPY-----------------LMEEIA-QNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVL  202 (308)
Q Consensus       142 ~~~~~~~~L~~L~l~~~~~~~~-----------------~l~~l~-~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L  202 (308)
                      ..+..+++|++|+++++.++..                 ....++ ..+++|++|+++++ +..... .....+++|++|
T Consensus       200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L  278 (636)
T 4eco_A          200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLI  278 (636)
T ss_dssp             GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEE
T ss_pred             HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEE
Confidence            3466889999999999987763                 222222 25899999999886 332111 123479999999


Q ss_pred             EeeCCC-CCHHHHHHHHHc------CCCCCEEecccCCCc
Q 021717          203 SLRCTT-LNRDALILILDG------LQNLEVLNISHCLLI  235 (308)
Q Consensus       203 ~L~~~~-it~~~l~~l~~~------~p~L~~L~l~~C~~i  235 (308)
                      +++++. ++...+..-+..      +++|++|++++|...
T Consensus       279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            999988 887333333333      599999999998644

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.36  E-value=2.4e-05  Score=72.01  Aligned_cols=109  Identities=18%  Similarity=0.110  Sum_probs=44.8

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      .+++|+.|+|+++. ++... ...+..+++|++|+++++.+.......+ ..+++|++|+++++ +....... ...+++
T Consensus        78 ~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~  153 (477)
T 2id5_A           78 NLFNLRTLGLRSNR-LKLIP-LGVFTGLSNLTKLDISENKIVILLDYMF-QDLYNLKSLEVGDNDLVYISHRA-FSGLNS  153 (477)
T ss_dssp             TCTTCCEEECCSSC-CCSCC-TTSSTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEEECCTTCCEECTTS-STTCTT
T ss_pred             CCccCCEEECCCCc-CCccC-cccccCCCCCCEEECCCCccccCChhHc-cccccCCEEECCCCccceeChhh-ccCCCC
Confidence            34555555555441 21100 0112345555555555554332111111 23455555555543 11100001 124555


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      |++|+++++.++... ...+..+++|+.|+++++.
T Consensus       154 L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~  187 (477)
T 2id5_A          154 LEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLN  187 (477)
T ss_dssp             CCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCC
T ss_pred             CCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCc
Confidence            555555554443211 1223445555555555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.36  E-value=1.6e-05  Score=73.74  Aligned_cols=108  Identities=14%  Similarity=0.043  Sum_probs=72.9

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      .+++|+.|+|+++ .++......+...+++|+.|++++|.++..  .... .+++|+.|+++++ ++... .. ...+++
T Consensus       142 ~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~-~l~~L~~L~Ls~N~l~~~~-~~-~~~l~~  215 (487)
T 3oja_A          142 CRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQV-VFAKLKTLDLSSNKLAFMG-PE-FQSAAG  215 (487)
T ss_dssp             GGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCC-CCTTCCEEECCSSCCCEEC-GG-GGGGTT
T ss_pred             CCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCccccc--cccc-cCCCCCEEECCCCCCCCCC-Hh-HcCCCC
Confidence            4688889988876 443322233344788999999999876533  1111 4789999999886 33211 11 347899


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  235 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i  235 (308)
                      |+.|+|+++.++.  +...+..+++|+.|+++++...
T Consensus       216 L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          216 VTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBC
T ss_pred             ccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCc
Confidence            9999999888873  3333456789999999887644

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.35  E-value=1.5e-05  Score=75.79  Aligned_cols=105  Identities=15%  Similarity=0.066  Sum_probs=44.2

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      .+++|+.|+|+++. ++.. ....+..+++|+.|+++++.++.-. ..+...+++|++|+++++ +..... .....+++
T Consensus        97 ~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~  172 (597)
T 3oja_B           97 YAHTIQKLYMGFNA-IRYL-PPHVFQNVPLLTVLVLERNDLSSLP-RGIFHNTPKLTTLSMSNNNLERIED-DTFQATTS  172 (597)
T ss_dssp             TCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTT
T ss_pred             CCCCCCEEECCCCc-CCCC-CHHHHcCCCCCCEEEeeCCCCCCCC-HHHhccCCCCCEEEeeCCcCCCCCh-hhhhcCCc
Confidence            34555555555442 2110 0112344555555555555433110 111123455566655554 211100 01124556


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccC
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHC  232 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C  232 (308)
                      |++|+++++.++...    ...+++|+.|+++++
T Consensus       173 L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          173 LQNLQLSSNRLTHVD----LSLIPSLFHANVSYN  202 (597)
T ss_dssp             CCEEECTTSCCSBCC----GGGCTTCSEEECCSS
T ss_pred             CcEEECcCCCCCCcC----hhhhhhhhhhhcccC
Confidence            666666555544321    233455555555444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.34  E-value=6.6e-05  Score=69.01  Aligned_cols=101  Identities=19%  Similarity=0.105  Sum_probs=76.8

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      .+++|+.|+++++ .+++.  . .+..+++|++|+++++.++.-.   + ..+++|++|+++++ ++..   . ...+++
T Consensus        40 ~l~~L~~L~Ls~n-~l~~~--~-~l~~l~~L~~L~Ls~n~l~~~~---~-~~l~~L~~L~Ls~N~l~~~---~-~~~l~~  107 (457)
T 3bz5_A           40 QLATLTSLDCHNS-SITDM--T-GIEKLTGLTKLICTSNNITTLD---L-SQNTNLTYLACDSNKLTNL---D-VTPLTK  107 (457)
T ss_dssp             HHTTCCEEECCSS-CCCCC--T-TGGGCTTCSEEECCSSCCSCCC---C-TTCTTCSEEECCSSCCSCC---C-CTTCTT
T ss_pred             HcCCCCEEEccCC-CcccC--h-hhcccCCCCEEEccCCcCCeEc---c-ccCCCCCEEECcCCCCcee---e-cCCCCc
Confidence            4689999999987 44332  1 3678999999999999766431   2 35899999999987 4332   1 358999


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      |++|+++++.++.-.    +..+++|++|+++++....
T Consensus       108 L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~  141 (457)
T 3bz5_A          108 LTYLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTE  141 (457)
T ss_dssp             CCEEECCSSCCSCCC----CTTCTTCCEEECTTSCCSC
T ss_pred             CCEEECCCCcCCeec----CCCCCcCCEEECCCCccce
Confidence            999999988887532    5679999999999886433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.34  E-value=1.1e-05  Score=73.59  Aligned_cols=134  Identities=19%  Similarity=0.167  Sum_probs=82.7

Q ss_pred             CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCC
Q 021717           96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF  175 (308)
Q Consensus        96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L  175 (308)
                      ..++.+.+..+... .-.. .....+++|+.|+|+++. ++... ...+..+++|++|+++++.++.-.-..+ ..+++|
T Consensus        64 ~~l~~L~L~~n~i~-~~~~-~~~~~l~~L~~L~Ls~n~-i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L  138 (440)
T 3zyj_A           64 TNTRLLNLHENQIQ-IIKV-NSFKHLRHLEILQLSRNH-IRTIE-IGAFNGLANLNTLELFDNRLTTIPNGAF-VYLSKL  138 (440)
T ss_dssp             TTCSEEECCSCCCC-EECT-TTTSSCSSCCEEECCSSC-CCEEC-GGGGTTCSSCCEEECCSSCCSSCCTTTS-CSCSSC
T ss_pred             CCCcEEEccCCcCC-eeCH-HHhhCCCCCCEEECCCCc-CCccC-hhhccCCccCCEEECCCCcCCeeCHhHh-hccccC
Confidence            45677777654321 1000 112357899999999873 33211 1345678999999999986552211122 357899


Q ss_pred             CeeEecCC-CCHHHHHHHHhcCCCCcEEEeeC-CCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          176 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRC-TTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       176 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~-~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      ++|+++++ +..-. ......+++|++|+++. +.++... ...+..+++|++|++++|...+
T Consensus       139 ~~L~L~~N~i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~  199 (440)
T 3zyj_A          139 KELWLRNNPIESIP-SYAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCNLRE  199 (440)
T ss_dssp             CEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSCCSS
T ss_pred             ceeeCCCCcccccC-HHHhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCcCcc
Confidence            99999876 33111 11234789999999985 4443211 1234678999999999986444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.33  E-value=1e-05  Score=69.79  Aligned_cols=110  Identities=16%  Similarity=0.077  Sum_probs=74.6

Q ss_pred             hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCC
Q 021717          119 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLP  197 (308)
Q Consensus       119 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p  197 (308)
                      ..+++|+.|+|+++. ++...   ....+++|+.|+++++.+..  +......+++|+.|+++++ ++.-. ......++
T Consensus        52 ~~l~~L~~L~L~~n~-l~~~~---~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N~l~~l~-~~~~~~l~  124 (290)
T 1p9a_G           52 MPYTRLTQLNLDRAE-LTKLQ---VDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLP-LGALRGLG  124 (290)
T ss_dssp             TTCTTCCEEECTTSC-CCEEE---CCSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEECCSSCCCCCC-SSTTTTCT
T ss_pred             hcCCCCCEEECCCCc-cCccc---CCCCCCcCCEEECCCCcCCc--CchhhccCCCCCEEECCCCcCcccC-HHHHcCCC
Confidence            357899999999873 33211   11578999999999996541  1112245789999999886 33111 11234789


Q ss_pred             CCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          198 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       198 ~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      +|++|+|+++.++... ...+..+++|+.|+++++....
T Consensus       125 ~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G          125 ELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             TCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCSC
T ss_pred             CCCEEECCCCCCCccC-hhhcccccCCCEEECCCCcCCc
Confidence            9999999988876321 1234568999999999886443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.31  E-value=0.00027  Score=59.95  Aligned_cols=90  Identities=18%  Similarity=0.200  Sum_probs=63.7

Q ss_pred             HHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChH-HHHHHHHcCCCCCeeEecCC-CCH-----
Q 021717          114 LTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPY-LMEEIAQNCRNFRELKIMGP-FDL-----  186 (308)
Q Consensus       114 l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~l~~l~~~~~~L~~L~l~~~-~~~-----  186 (308)
                      +..+...+|+|++|+|++.....-.++...+..+++|+.|+|+++.+.+. .+..+. .. +|++|.+.++ +..     
T Consensus       162 l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~-~l-~L~~L~L~~Npl~~~~~~~  239 (267)
T 3rw6_A          162 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GL-KLEELWLDGNSLCDTFRDQ  239 (267)
T ss_dssp             HHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT-TS-CCSEEECTTSTTGGGCSSH
T ss_pred             HHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc-cC-CcceEEccCCcCccccCcc
Confidence            44455679999999999874433334556677999999999999977643 333332 23 8999999886 332     


Q ss_pred             -HHHHHHHhcCCCCcEEEee
Q 021717          187 -LFASTLNMYLPKLKVLSLR  205 (308)
Q Consensus       187 -~~~~~l~~~~p~L~~L~L~  205 (308)
                       .....+...+|+|+.|+=.
T Consensus       240 ~~y~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          240 STYISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             HHHHHHHHHHCTTCCEESSC
T ss_pred             hhHHHHHHHHCcccCeECCc
Confidence             3344566789999998743

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.26  E-value=3.1e-06  Score=73.81  Aligned_cols=111  Identities=15%  Similarity=0.062  Sum_probs=72.9

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCC-CCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCC
Q 021717          122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPS-IANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL  199 (308)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L  199 (308)
                      .+++.|+|+++.......+...+..+++|+.|++++ +.+.......+. .+++|++|+++++ ++..... ....+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPD-FLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEECCG-GGGGCTTC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCeeCCcCCH-HHhCCCCC
Confidence            578888888763221001234567899999999994 543322222333 5899999999875 3211111 23479999


Q ss_pred             cEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021717          200 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  235 (308)
Q Consensus       200 ~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i  235 (308)
                      ++|+++++.++.. +...+..+++|++|+++++...
T Consensus       128 ~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~  162 (313)
T 1ogq_A          128 VTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRIS  162 (313)
T ss_dssp             CEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCE
T ss_pred             CEEeCCCCccCCc-CChHHhcCCCCCeEECcCCccc
Confidence            9999998776531 1223467999999999998743

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.16  E-value=4.7e-05  Score=73.30  Aligned_cols=132  Identities=20%  Similarity=0.134  Sum_probs=84.9

Q ss_pred             CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCC
Q 021717           96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF  175 (308)
Q Consensus        96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L  175 (308)
                      ..++.+.+..+....  ........+++|++|+++++. ++.. ....+..+++|+.|+++++.+..-.-..++ .+++|
T Consensus        25 ~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~-~l~~L   99 (680)
T 1ziw_A           25 TNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNT-ISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFA-FCTNL   99 (680)
T ss_dssp             TTCSEEECCSSCCCC--CCGGGGGGGTTCSEEECCSSC-CCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTT-TCTTC
T ss_pred             CCCcEEECCCCCCCC--cCHHHHhCCCcCcEEECCCCc-cCcc-CHHHHhcccCcCEEECCCCccCccChhhhc-cCCCC
Confidence            578888887653221  011123457999999999863 3221 123456889999999999865422111222 58999


Q ss_pred             CeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCC
Q 021717          176 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  234 (308)
Q Consensus       176 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~  234 (308)
                      ++|+++++ +..-... ....+++|++|+++++.++.... ..+..+++|++|+++++..
T Consensus       100 ~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l  157 (680)
T 1ziw_A          100 TELHLMSNSIQKIKNN-PFVKQKNLITLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKI  157 (680)
T ss_dssp             SEEECCSSCCCCCCSC-TTTTCTTCCEEECCSSCCSCCCC-CSSSCCTTCCEEECCSSCC
T ss_pred             CEEECCCCccCccChh-HccccCCCCEEECCCCcccccCc-hhhcccccCCEEEccCCcc
Confidence            99999876 3211101 12478999999999887754321 1235689999999998853

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.15  E-value=1.9e-05  Score=69.16  Aligned_cols=37  Identities=27%  Similarity=0.349  Sum_probs=19.9

Q ss_pred             cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      .+++|++|+++++.++  .+..-+..+++|+.|+++++.
T Consensus       239 ~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          239 FLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             GCTTCCEEECCSSCCC--BCCTTGGGCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCCcCe--ecChhhhcCccCCEEECCCCC
Confidence            5566666666655554  222223455666666666554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.13  E-value=1.4e-05  Score=70.98  Aligned_cols=110  Identities=16%  Similarity=0.077  Sum_probs=73.8

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHh-cCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCC
Q 021717          122 PQLKRLVMPAWNRIKKTGICKAIR-MWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL  199 (308)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L  199 (308)
                      +.++.|+|++. .++... ...+. .+++|+.|+++++.++.-....+. .+++|+.|+++++ +..-. ......+++|
T Consensus        39 ~~l~~L~Ls~N-~l~~l~-~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L  114 (361)
T 2xot_A           39 SYTALLDLSHN-NLSRLR-AEWTPTRLTNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLSSNHLHTLD-EFLFSDLQAL  114 (361)
T ss_dssp             TTCSEEECCSS-CCCEEC-TTSSSSCCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEEC-TTTTTTCTTC
T ss_pred             CCCCEEECCCC-CCCccC-hhhhhhcccccCEEECCCCcCCccChhhcc-CCCCCCEEECCCCcCCcCC-HHHhCCCcCC
Confidence            45889999876 343211 11223 789999999999976532222232 5899999999987 33111 1123478999


Q ss_pred             cEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          200 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       200 ~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      +.|+|+++.++... ...+..+++|+.|+|+++...+
T Consensus       115 ~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~  150 (361)
T 2xot_A          115 EVLLLYNNHIVVVD-RNAFEDMAQLQKLYLSQNQISR  150 (361)
T ss_dssp             CEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCS
T ss_pred             CEEECCCCcccEEC-HHHhCCcccCCEEECCCCcCCe
Confidence            99999998886421 1234678999999999886443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.08  E-value=1.3e-05  Score=76.24  Aligned_cols=84  Identities=17%  Similarity=0.143  Sum_probs=35.2

Q ss_pred             hcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcC-C
Q 021717          145 RMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGL-Q  222 (308)
Q Consensus       145 ~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~-p  222 (308)
                      ..+++|+.|++++|.+....-..+ ..+++|+.|+++++ ++.-.. .....+++|+.|+|+++.++...-. .+..+ +
T Consensus       491 ~~l~~L~~L~Ls~N~L~~l~~~~f-~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~  567 (635)
T 4g8a_A          491 TELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTSKKQ-ELQHFPS  567 (635)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTSCCCBCCC-GGGTTCTTCCEEECTTSCCCBCCSS-CTTCCCT
T ss_pred             hhccccCEEECCCCccCCcChHHH-cCCCCCCEEECCCCcCCCCCh-hHHhCCCCCCEEECCCCcCCCCCHH-HHHhhhC
Confidence            345555555555554332111111 13455555555554 211000 0123455566666655554321111 11222 3


Q ss_pred             CCCEEeccc
Q 021717          223 NLEVLNISH  231 (308)
Q Consensus       223 ~L~~L~l~~  231 (308)
                      +|+.|++++
T Consensus       568 ~L~~L~L~~  576 (635)
T 4g8a_A          568 SLAFLNLTQ  576 (635)
T ss_dssp             TCCEEECTT
T ss_pred             cCCEEEeeC
Confidence            555666554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.08  E-value=4e-05  Score=73.80  Aligned_cols=39  Identities=10%  Similarity=0.107  Sum_probs=18.7

Q ss_pred             HhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC
Q 021717          144 IRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP  183 (308)
Q Consensus       144 ~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~  183 (308)
                      +..+++|+.|+++++.++.-....+ ..+++|+.|+++++
T Consensus       476 ~~~l~~L~~L~Ls~N~l~~i~~~~~-~~l~~L~~L~Ls~N  514 (680)
T 1ziw_A          476 FQPLRNLTILDLSNNNIANINDDML-EGLEKLEILDLQHN  514 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSS
T ss_pred             cccCCCCCEEECCCCCCCcCChhhh-ccccccCEEeCCCC
Confidence            3455666666666664332111111 23555666666554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.02  E-value=4.7e-05  Score=75.36  Aligned_cols=38  Identities=21%  Similarity=0.187  Sum_probs=17.0

Q ss_pred             cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccC
Q 021717          195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHC  232 (308)
Q Consensus       195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C  232 (308)
                      .+++|++|+|+++.++.......+..+++|++|+++++
T Consensus       121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A          121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence            44555555555444433222122344555555555544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=96.88  E-value=0.00092  Score=63.74  Aligned_cols=75  Identities=20%  Similarity=0.132  Sum_probs=47.0

Q ss_pred             CCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCC
Q 021717          147 WRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLE  225 (308)
Q Consensus       147 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~  225 (308)
                      +++|+.|++++|.++.     +...+++|+.|+++++ ++.     +...+++|+.|+|++|.++  .+...+..+++|+
T Consensus       220 ~~~L~~L~Ls~N~L~~-----lp~~l~~L~~L~Ls~N~L~~-----lp~~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~  287 (622)
T 3g06_A          220 PSGLKELIVSGNRLTS-----LPVLPSELKELMVSGNRLTS-----LPMLPSGLLSLSVYRNQLT--RLPESLIHLSSET  287 (622)
T ss_dssp             CTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCC--SCCGGGGGSCTTC
T ss_pred             CCCCCEEEccCCccCc-----CCCCCCcCcEEECCCCCCCc-----CCcccccCcEEeCCCCCCC--cCCHHHhhccccC
Confidence            3567777777765442     1134577777777765 321     1125677888888877776  3333456678888


Q ss_pred             EEecccCC
Q 021717          226 VLNISHCL  233 (308)
Q Consensus       226 ~L~l~~C~  233 (308)
                      .|+++++.
T Consensus       288 ~L~L~~N~  295 (622)
T 3g06_A          288 TVNLEGNP  295 (622)
T ss_dssp             EEECCSCC
T ss_pred             EEEecCCC
Confidence            88888765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.82  E-value=8.7e-05  Score=58.77  Aligned_cols=85  Identities=14%  Similarity=0.071  Sum_probs=49.4

Q ss_pred             CCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCE
Q 021717          148 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEV  226 (308)
Q Consensus       148 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~  226 (308)
                      ++|+.|+++++.+....-..+ ..+++|+.|+++++ ++.- .......+++|++|+|+++.++.-. ...+..+++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~  109 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVF-DHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHLKSIP-RGAFDNLKSLTH  109 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCSE
T ss_pred             CCCcEEEeCCCCccccCHHHh-cCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCccceeC-HHHhccccCCCE
Confidence            567777777765432111111 24667777777665 2210 0112246788889988887776211 123456888999


Q ss_pred             EecccCCCc
Q 021717          227 LNISHCLLI  235 (308)
Q Consensus       227 L~l~~C~~i  235 (308)
                      |++++..-.
T Consensus       110 L~L~~N~~~  118 (174)
T 2r9u_A          110 IYLYNNPWD  118 (174)
T ss_dssp             EECCSSCBC
T ss_pred             EEeCCCCcc
Confidence            999877543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=96.81  E-value=0.0001  Score=64.44  Aligned_cols=130  Identities=19%  Similarity=0.119  Sum_probs=74.4

Q ss_pred             CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCC
Q 021717           96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF  175 (308)
Q Consensus        96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L  175 (308)
                      ..++.+.+..+... .- .......+++|++|+++++ .++.. ....+..+++|++|+++++.+..-. .   ...++|
T Consensus        54 ~~l~~L~l~~n~i~-~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~-~---~~~~~L  125 (332)
T 2ft3_A           54 PDTTLLDLQNNDIS-EL-RKDDFKGLQHLYALVLVNN-KISKI-HEKAFSPLRKLQKLYISKNHLVEIP-P---NLPSSL  125 (332)
T ss_dssp             TTCCEEECCSSCCC-EE-CTTTTTTCTTCCEEECCSS-CCCEE-CGGGSTTCTTCCEEECCSSCCCSCC-S---SCCTTC
T ss_pred             CCCeEEECCCCcCC-cc-CHhHhhCCCCCcEEECCCC-ccCcc-CHhHhhCcCCCCEEECCCCcCCccC-c---cccccC
Confidence            46777777654321 10 0011235788888888876 33321 1233567888888888888554100 0   112688


Q ss_pred             CeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHH-HHHHcCCCCCEEecccCCCc
Q 021717          176 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALI-LILDGLQNLEVLNISHCLLI  235 (308)
Q Consensus       176 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~-~l~~~~p~L~~L~l~~C~~i  235 (308)
                      ++|+++++ +..-. ......+++|++|+++++.++..++. ..+..+ +|++|+++++...
T Consensus       126 ~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          126 VELRIHDNRIRKVP-KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CEEECCSSCCCCCC-SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CEEECCCCccCccC-HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            88888876 32111 11234788899999988877643221 112223 8888888887643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=96.77  E-value=2.5e-05  Score=65.03  Aligned_cols=132  Identities=9%  Similarity=0.047  Sum_probs=79.5

Q ss_pred             CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCC-CCCChHHHHHHHHcCCC
Q 021717           96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPS-IANPPYLMEEIAQNCRN  174 (308)
Q Consensus        96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~l~~l~~~~~~  174 (308)
                      ..++.+.+..+....  .-......+++|+.|+++++..++.-. ...+..+++|++|++++ +.+..-.... ...+++
T Consensus        31 ~~l~~L~l~~n~l~~--i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~-f~~l~~  106 (239)
T 2xwt_C           31 PSTQTLKLIETHLRT--IPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDA-LKELPL  106 (239)
T ss_dssp             TTCCEEEEESCCCSE--ECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTS-EECCTT
T ss_pred             CcccEEEEeCCcceE--ECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHH-hCCCCC
Confidence            467777776543211  000112357899999999874343210 11346788999999987 6554211111 225789


Q ss_pred             CCeeEecCC-CCHHHHHHHHhcCCCCc---EEEeeCC-CCCHHHHHHHHHcCCCCC-EEecccCCCc
Q 021717          175 FRELKIMGP-FDLLFASTLNMYLPKLK---VLSLRCT-TLNRDALILILDGLQNLE-VLNISHCLLI  235 (308)
Q Consensus       175 L~~L~l~~~-~~~~~~~~l~~~~p~L~---~L~L~~~-~it~~~l~~l~~~~p~L~-~L~l~~C~~i  235 (308)
                      |++|+++++ ++.  +.. ...+++|+   +|+++++ .++.-.- ..+..+++|+ +|+++++...
T Consensus       107 L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          107 LKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             CCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCC
T ss_pred             CCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCc
Confidence            999999875 322  111 34677777   9999987 6653211 1245688999 9999887543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.63  E-value=0.00015  Score=57.18  Aligned_cols=84  Identities=14%  Similarity=0.067  Sum_probs=48.4

Q ss_pred             CCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCE
Q 021717          148 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEV  226 (308)
Q Consensus       148 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~  226 (308)
                      ++|+.|+++++.++.-.-..+. .+++|++|+++++ ++.- .......+++|++|+|+++.++.-. ...+..+++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~  106 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFD-RLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQLKSIP-RGAFDNLKSLTH  106 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred             CCCcEEEcCCCcCCccChhhhc-CcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCccCEeC-HHHhcCCCCCCE
Confidence            5677777777654322111122 3667777777765 2210 0112246788888888877765311 123456788888


Q ss_pred             EecccCCC
Q 021717          227 LNISHCLL  234 (308)
Q Consensus       227 L~l~~C~~  234 (308)
                      |++++..-
T Consensus       107 L~L~~N~~  114 (170)
T 3g39_A          107 IWLLNNPW  114 (170)
T ss_dssp             EECCSSCB
T ss_pred             EEeCCCCC
Confidence            88887653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=96.59  E-value=0.00017  Score=56.95  Aligned_cols=86  Identities=17%  Similarity=0.108  Sum_probs=59.0

Q ss_pred             CCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCC
Q 021717          147 WRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLE  225 (308)
Q Consensus       147 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~  225 (308)
                      .++|++|+++++.+...... ....+++|++|+++++ ++.-. ......+++|+.|+++++.++... ...+..+++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~  103 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHG-VFDKLTQLTKLSLSQNQIQSLP-DGVFDKLTKLTILYLHENKLQSLP-NGVFDKLTQLK  103 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred             CCCCcEEEeCCCcccEeCHH-HhcCcccccEEECCCCcceEeC-hhHccCCCccCEEECCCCCccccC-HHHhhCCcccC
Confidence            47999999999866522111 1235799999999886 33111 112347899999999988877321 12345689999


Q ss_pred             EEecccCCCc
Q 021717          226 VLNISHCLLI  235 (308)
Q Consensus       226 ~L~l~~C~~i  235 (308)
                      +|+++++...
T Consensus       104 ~L~l~~N~l~  113 (177)
T 2o6r_A          104 ELALDTNQLK  113 (177)
T ss_dssp             EEECCSSCCS
T ss_pred             EEECcCCcce
Confidence            9999988543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=96.57  E-value=3.2e-05  Score=64.43  Aligned_cols=134  Identities=8%  Similarity=0.027  Sum_probs=76.2

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  174 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~  174 (308)
                      ...++.+.+..+..++.- -......+++|++|+++++..++.-. ...+..+++|++|+++++.+..  +.. ...+++
T Consensus        54 l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~  128 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLLKFLGIFNTGLKM--FPD-LTKVYS  128 (239)
T ss_dssp             CTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTCCEEEEEEECCCS--CCC-CTTCCB
T ss_pred             CCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCCCEEeCCCCCCcc--ccc-cccccc
Confidence            456777777665422110 00012357889999998633443211 1234578899999998885542  112 234677


Q ss_pred             CC---eeEecCC--CCHHHHHHHHhcCCCCc-EEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          175 FR---ELKIMGP--FDLLFASTLNMYLPKLK-VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       175 L~---~L~l~~~--~~~~~~~~l~~~~p~L~-~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      |+   .|+++++  ++.-. ......+++|+ .|+++++.++.-.- ..+.. ++|+.|+++++..++
T Consensus       129 L~~L~~L~l~~N~~l~~i~-~~~~~~l~~L~~~L~l~~n~l~~i~~-~~~~~-~~L~~L~L~~n~~l~  193 (239)
T 2xwt_C          129 TDIFFILEITDNPYMTSIP-VNAFQGLCNETLTLKLYNNGFTSVQG-YAFNG-TKLDAVYLNKNKYLT  193 (239)
T ss_dssp             CCSEEEEEEESCTTCCEEC-TTTTTTTBSSEEEEECCSCCCCEECT-TTTTT-CEEEEEECTTCTTCC
T ss_pred             cccccEEECCCCcchhhcC-cccccchhcceeEEEcCCCCCcccCH-hhcCC-CCCCEEEcCCCCCcc
Confidence            77   8888765  22100 01124678888 88888777652111 12222 788888888885443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=96.50  E-value=0.00031  Score=56.54  Aligned_cols=86  Identities=17%  Similarity=0.143  Sum_probs=59.9

Q ss_pred             CCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCC
Q 021717          147 WRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLE  225 (308)
Q Consensus       147 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~  225 (308)
                      .++|++|+++++.++.-. .. ...+++|+.|+++++ ++.-.. .....+++|++|+|+++.++...- ..+..+++|+
T Consensus        30 ~~~l~~L~L~~n~i~~ip-~~-~~~l~~L~~L~Ls~N~i~~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~  105 (193)
T 2wfh_A           30 PRDVTELYLDGNQFTLVP-KE-LSNYKHLTLIDLSNNRISTLSN-QSFSNMTQLLTLILSYNRLRCIPP-RTFDGLKSLR  105 (193)
T ss_dssp             CTTCCEEECCSSCCCSCC-GG-GGGCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCC
T ss_pred             CCCCCEEECCCCcCchhH-HH-hhcccCCCEEECCCCcCCEeCH-hHccCCCCCCEEECCCCccCEeCH-HHhCCCCCCC
Confidence            368999999999665211 22 346899999999986 332111 123478999999999888764321 2345789999


Q ss_pred             EEecccCCCcC
Q 021717          226 VLNISHCLLID  236 (308)
Q Consensus       226 ~L~l~~C~~i~  236 (308)
                      .|+++++...+
T Consensus       106 ~L~L~~N~l~~  116 (193)
T 2wfh_A          106 LLSLHGNDISV  116 (193)
T ss_dssp             EEECCSSCCCB
T ss_pred             EEECCCCCCCe
Confidence            99999986444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=96.47  E-value=0.00094  Score=62.97  Aligned_cols=55  Identities=13%  Similarity=0.105  Sum_probs=24.8

Q ss_pred             cCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCC
Q 021717          146 MWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLN  210 (308)
Q Consensus       146 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it  210 (308)
                      .+++|+.|++++|.++.  +.   ..+++|+.|+++++ ++.  +..+   .++|+.|+|++|.++
T Consensus       138 ~l~~L~~L~Ls~N~l~~--lp---~~l~~L~~L~Ls~N~L~~--lp~l---~~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          138 LPALLEYINADNNQLTM--LP---ELPTSLEVLSVRNNQLTF--LPEL---PESLEALDVSTNLLE  193 (571)
T ss_dssp             CCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCS
T ss_pred             cCccccEEeCCCCccCc--CC---CcCCCcCEEECCCCCCCC--cchh---hCCCCEEECcCCCCC
Confidence            34555555555554331  10   03455555555554 221  0001   156666666655554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=96.38  E-value=0.00017  Score=57.88  Aligned_cols=87  Identities=10%  Similarity=0.033  Sum_probs=59.7

Q ss_pred             CCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCE
Q 021717          148 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEV  226 (308)
Q Consensus       148 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~  226 (308)
                      ++|++|+++++.++......+...+++|++|+++++ ++.... .....+++|++|+|+++.++...- ..+..+++|++
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~  106 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-NAFEGASHIQELQLGENKIKEISN-KMFLGLHQLKT  106 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSCCCCEECS-SSSTTCTTCCE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH-hHcCCcccCCEEECCCCcCCccCH-HHhcCCCCCCE
Confidence            489999999996653222112346899999999987 332111 123478999999999988864321 22456899999


Q ss_pred             EecccCCCcC
Q 021717          227 LNISHCLLID  236 (308)
Q Consensus       227 L~l~~C~~i~  236 (308)
                      |+++++...+
T Consensus       107 L~L~~N~l~~  116 (192)
T 1w8a_A          107 LNLYDNQISC  116 (192)
T ss_dssp             EECCSSCCCE
T ss_pred             EECCCCcCCe
Confidence            9999986443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=96.31  E-value=0.00074  Score=63.71  Aligned_cols=102  Identities=9%  Similarity=0.004  Sum_probs=64.2

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCH--HHHHHHHhcC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDL--LFASTLNMYL  196 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~--~~~~~l~~~~  196 (308)
                      .+++|+.|+|+++. ++.  +.   ..+++|+.|++++|.++.  +..+   .++|+.|+++++ ++.  .....+....
T Consensus       138 ~l~~L~~L~Ls~N~-l~~--lp---~~l~~L~~L~Ls~N~L~~--lp~l---~~~L~~L~Ls~N~L~~lp~~~~~L~~~~  206 (571)
T 3cvr_A          138 LPALLEYINADNNQ-LTM--LP---ELPTSLEVLSVRNNQLTF--LPEL---PESLEALDVSTNLLESLPAVPVRNHHSE  206 (571)
T ss_dssp             CCTTCCEEECCSSC-CSC--CC---CCCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSSCCCCC-------
T ss_pred             cCccccEEeCCCCc-cCc--CC---CcCCCcCEEECCCCCCCC--cchh---hCCCCEEECcCCCCCchhhHHHhhhccc
Confidence            46788889888763 332  11   157899999999996653  1112   289999999886 331  0000222233


Q ss_pred             CCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCC
Q 021717          197 PKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  234 (308)
Q Consensus       197 p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~  234 (308)
                      +.|+.|+|++|.++.  +..-+..+++|+.|+++++..
T Consensus       207 ~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          207 ETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             -CCEEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSC
T ss_pred             ccceEEecCCCccee--cCHHHhcCCCCCEEEeeCCcC
Confidence            444999999888873  333334589999999998764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.29  E-value=0.00044  Score=60.41  Aligned_cols=111  Identities=10%  Similarity=0.073  Sum_probs=51.4

Q ss_pred             CHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCC--CCChHHHHHHHHcCCCCC-eeEecCCCCH
Q 021717          110 SDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI--ANPPYLMEEIAQNCRNFR-ELKIMGPFDL  186 (308)
Q Consensus       110 ~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~l~~l~~~~~~L~-~L~l~~~~~~  186 (308)
                      .......+...|++|+.|+|+.+. ++.-+ ...+..|++|++|+++.+  .+.+.++    ..|++|+ .+.+...+..
T Consensus       214 ~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~-~~aF~~~~~L~~l~l~~ni~~I~~~aF----~~~~~L~~~l~l~~~l~~  287 (329)
T 3sb4_A          214 DNADFKLIRDYMPNLVSLDISKTN-ATTIP-DFTFAQKKYLLKIKLPHNLKTIGQRVF----SNCGRLAGTLELPASVTA  287 (329)
T ss_dssp             CHHHHHHHHHHCTTCCEEECTTBC-CCEEC-TTTTTTCTTCCEEECCTTCCEECTTTT----TTCTTCCEEEEECTTCCE
T ss_pred             cHHHHHHHHHhcCCCeEEECCCCC-cceec-HhhhhCCCCCCEEECCcccceehHHHh----hCChhccEEEEEcccceE
Confidence            344444555556666666666531 11100 123445666666666654  1222222    2466666 6666544211


Q ss_pred             HHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEe
Q 021717          187 LFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLN  228 (308)
Q Consensus       187 ~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~  228 (308)
                      -+.. ...+|++|+.|++..+.++.-+- ..+.+|++|+.|.
T Consensus       288 I~~~-aF~~c~~L~~l~l~~n~i~~I~~-~aF~~~~~L~~ly  327 (329)
T 3sb4_A          288 IEFG-AFMGCDNLRYVLATGDKITTLGD-ELFGNGVPSKLIY  327 (329)
T ss_dssp             ECTT-TTTTCTTEEEEEECSSCCCEECT-TTTCTTCCCCEEE
T ss_pred             Echh-hhhCCccCCEEEeCCCccCccch-hhhcCCcchhhhc
Confidence            0001 12356666666665444432111 1234566666553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.23  E-value=0.00052  Score=66.76  Aligned_cols=89  Identities=15%  Similarity=0.086  Sum_probs=61.7

Q ss_pred             HHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHH
Q 021717          141 CKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILD  219 (308)
Q Consensus       141 ~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~  219 (308)
                      ...+..++.|+.|+|+++.+.. .-..+. .+++|++|+|+++ ++ . +..-...+++|+.|+|++|.++  .+..-+.
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~-~l~~L~~L~Ls~N~l~-~-lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~  290 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFN-ISANIF-KYDFLTRLYLNGNSLT-E-LPAEIKNLSNLRVLDLSHNRLT--SLPAELG  290 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSC-CCGGGG-GCCSCSCCBCTTSCCS-C-CCGGGGGGTTCCEEECTTSCCS--SCCSSGG
T ss_pred             hhhhccCCCCcEEECCCCCCCC-CChhhc-CCCCCCEEEeeCCcCc-c-cChhhhCCCCCCEEeCcCCcCC--ccChhhc
Confidence            3445678999999999996541 111122 5899999999987 44 1 1112358999999999999887  3444456


Q ss_pred             cCCCCCEEecccCCCc
Q 021717          220 GLQNLEVLNISHCLLI  235 (308)
Q Consensus       220 ~~p~L~~L~l~~C~~i  235 (308)
                      .+++|++|+|+++...
T Consensus       291 ~l~~L~~L~L~~N~l~  306 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMVT  306 (727)
T ss_dssp             GGTTCSEEECCSSCCC
T ss_pred             CCCCCCEEECCCCCCC
Confidence            7899999999998543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=96.16  E-value=0.0033  Score=59.91  Aligned_cols=93  Identities=20%  Similarity=0.170  Sum_probs=51.8

Q ss_pred             CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCC
Q 021717           96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF  175 (308)
Q Consensus        96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L  175 (308)
                      ..++.+.+..+...      .+....++|+.|+|+++. ++.  +   -..+++|++|++++|.++.-     ....++|
T Consensus        61 ~~L~~L~L~~N~l~------~lp~~l~~L~~L~Ls~N~-l~~--l---p~~l~~L~~L~Ls~N~l~~l-----~~~l~~L  123 (622)
T 3g06_A           61 AHITTLVIPDNNLT------SLPALPPELRTLEVSGNQ-LTS--L---PVLPPGLLELSIFSNPLTHL-----PALPSGL  123 (622)
T ss_dssp             TTCSEEEECSCCCS------CCCCCCTTCCEEEECSCC-CSC--C---CCCCTTCCEEEECSCCCCCC-----CCCCTTC
T ss_pred             CCCcEEEecCCCCC------CCCCcCCCCCEEEcCCCc-CCc--C---CCCCCCCCEEECcCCcCCCC-----CCCCCCc
Confidence            45666666654321      111145677777777763 321  1   11567777777777754320     1135677


Q ss_pred             CeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCC
Q 021717          176 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLN  210 (308)
Q Consensus       176 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it  210 (308)
                      +.|+++++ ++.     +...+++|++|+++++.++
T Consensus       124 ~~L~L~~N~l~~-----lp~~l~~L~~L~Ls~N~l~  154 (622)
T 3g06_A          124 CKLWIFGNQLTS-----LPVLPPGLQELSVSDNQLA  154 (622)
T ss_dssp             CEEECCSSCCSC-----CCCCCTTCCEEECCSSCCS
T ss_pred             CEEECCCCCCCc-----CCCCCCCCCEEECcCCcCC
Confidence            77777665 221     1223577777777766654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.06  E-value=0.00082  Score=52.78  Aligned_cols=85  Identities=11%  Similarity=0.005  Sum_probs=56.2

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCc
Q 021717          122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK  200 (308)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~  200 (308)
                      ++|+.|+|++.. ++.. ....+..+++|+.|+++++.++.-.- .....+++|+.|+++++ +..-. ......+++|+
T Consensus        30 ~~l~~L~L~~N~-i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~  105 (170)
T 3g39_A           30 TTTQVLYLYDNQ-ITKL-EPGVFDRLTQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLNDNQLKSIP-RGAFDNLKSLT  105 (170)
T ss_dssp             TTCSEEECCSSC-CCCC-CTTTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred             CCCcEEEcCCCc-CCcc-ChhhhcCcccCCEEECCCCCcCccCh-hhccCCCCCCEEECCCCccCEeC-HHHhcCCCCCC
Confidence            678999998763 3221 02235678999999999996652211 11235789999999886 32110 11234789999


Q ss_pred             EEEeeCCCCC
Q 021717          201 VLSLRCTTLN  210 (308)
Q Consensus       201 ~L~L~~~~it  210 (308)
                      +|+|++|.++
T Consensus       106 ~L~L~~N~~~  115 (170)
T 3g39_A          106 HIWLLNNPWD  115 (170)
T ss_dssp             EEECCSSCBC
T ss_pred             EEEeCCCCCC
Confidence            9999988765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.03  E-value=0.00086  Score=52.92  Aligned_cols=85  Identities=13%  Similarity=0.066  Sum_probs=56.6

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCc
Q 021717          122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK  200 (308)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~  200 (308)
                      ++|+.|+|++.. ++.. ....+..+++|+.|+++++.++.-. ..+...+++|+.|+++++ +..- .......+++|+
T Consensus        33 ~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~  108 (174)
T 2r9u_A           33 TDKQRLWLNNNQ-ITKL-EPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLT  108 (174)
T ss_dssp             TTCSEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCS
T ss_pred             CCCcEEEeCCCC-cccc-CHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCcccee-CHHHhccccCCC
Confidence            689999999763 3211 1234567899999999999665311 112235789999999886 3311 112234789999


Q ss_pred             EEEeeCCCCC
Q 021717          201 VLSLRCTTLN  210 (308)
Q Consensus       201 ~L~L~~~~it  210 (308)
                      +|+|++|.++
T Consensus       109 ~L~L~~N~~~  118 (174)
T 2r9u_A          109 HIYLYNNPWD  118 (174)
T ss_dssp             EEECCSSCBC
T ss_pred             EEEeCCCCcc
Confidence            9999988765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=95.85  E-value=0.002  Score=58.96  Aligned_cols=13  Identities=15%  Similarity=0.143  Sum_probs=6.0

Q ss_pred             cCCCCCEEecccC
Q 021717          220 GLQNLEVLNISHC  232 (308)
Q Consensus       220 ~~p~L~~L~l~~C  232 (308)
                      .+++|++|+++++
T Consensus       235 ~l~~L~~L~l~~N  247 (454)
T 1jl5_A          235 NLPFLTTIYADNN  247 (454)
T ss_dssp             TCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCC
Confidence            3444444444444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=95.67  E-value=0.0048  Score=56.43  Aligned_cols=76  Identities=14%  Similarity=0.068  Sum_probs=35.8

Q ss_pred             hcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCC
Q 021717          145 RMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQN  223 (308)
Q Consensus       145 ~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~  223 (308)
                      ..+++|++|+++++.+..     +....++|+.|+++++ +..  +.. ...+++|++|+++++.++.  +   -...++
T Consensus       192 ~~l~~L~~L~l~~N~l~~-----l~~~~~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~--l---~~~~~~  258 (454)
T 1jl5_A          192 QNLPFLTAIYADNNSLKK-----LPDLPLSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNLLKT--L---PDLPPS  258 (454)
T ss_dssp             TTCTTCCEEECCSSCCSS-----CCCCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSS--C---CSCCTT
T ss_pred             cCCCCCCEEECCCCcCCc-----CCCCcCcccEEECcCCcCCc--ccc-cCCCCCCCEEECCCCcCCc--c---cccccc
Confidence            344555555555553321     0011235555555544 210  111 2356777777777666542  1   112356


Q ss_pred             CCEEecccCC
Q 021717          224 LEVLNISHCL  233 (308)
Q Consensus       224 L~~L~l~~C~  233 (308)
                      |++|++++|.
T Consensus       259 L~~L~l~~N~  268 (454)
T 1jl5_A          259 LEALNVRDNY  268 (454)
T ss_dssp             CCEEECCSSC
T ss_pred             cCEEECCCCc
Confidence            6666666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=95.35  E-value=0.0014  Score=57.44  Aligned_cols=61  Identities=11%  Similarity=0.096  Sum_probs=27.1

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC
Q 021717          121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP  183 (308)
Q Consensus       121 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~  183 (308)
                      .++|+.|+|++...++.. ....+..+++|+.|+|+++.++...-..+ ..+++|+.|+|+++
T Consensus        30 ~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAF-HFTPRLSRLNLSFN   90 (347)
T ss_dssp             CSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGG-GSCSCCCEEECCSS
T ss_pred             CCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHh-cCCcCCCEEeCCCC
Confidence            445666666542223211 01123455666666666664432111111 23555556655544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=94.21  E-value=0.0053  Score=53.71  Aligned_cols=88  Identities=18%  Similarity=0.241  Sum_probs=52.3

Q ss_pred             HhcCCCCCEEEeCC-CCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcC
Q 021717          144 IRMWRDLESLTMPS-IANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGL  221 (308)
Q Consensus       144 ~~~~~~L~~L~l~~-~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~  221 (308)
                      +..+++|++|+|++ +.+..-.-..+ ..+++|+.|+|+++ +..-.. .....+++|++|+|++|.++.-. ..++...
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~  103 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSFNALESLS-WKTVQGL  103 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCSSCCSCCC-STTTCSC
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHh-ccccCCCEEECCCCccceeCH-HHhcCCcCCCEEeCCCCccceeC-HHHcccC
Confidence            56677888888885 65542211122 24788888888876 322111 12347888888888887775211 1122223


Q ss_pred             CCCCEEecccCCCc
Q 021717          222 QNLEVLNISHCLLI  235 (308)
Q Consensus       222 p~L~~L~l~~C~~i  235 (308)
                      + |+.|++.+..-.
T Consensus       104 ~-L~~l~l~~N~~~  116 (347)
T 2ifg_A          104 S-LQELVLSGNPLH  116 (347)
T ss_dssp             C-CCEEECCSSCCC
T ss_pred             C-ceEEEeeCCCcc
Confidence            3 888888876543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=93.52  E-value=0.0071  Score=52.60  Aligned_cols=103  Identities=11%  Similarity=0.056  Sum_probs=58.5

Q ss_pred             CcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCCCCHHHHHHHHhcCCCCc-EE
Q 021717          124 LKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLK-VL  202 (308)
Q Consensus       124 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~p~L~-~L  202 (308)
                      +..+.+.+  .+....+..+...|++|++|+++.+.+..-.-.+ ...|++|+.|.+...+..-+. ....+|++|+ .|
T Consensus       204 ~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~a-F~~~~~L~~l~l~~ni~~I~~-~aF~~~~~L~~~l  279 (329)
T 3sb4_A          204 INFLTIEG--KLDNADFKLIRDYMPNLVSLDISKTNATTIPDFT-FAQKKYLLKIKLPHNLKTIGQ-RVFSNCGRLAGTL  279 (329)
T ss_dssp             CSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTT-TTTCTTCCEEECCTTCCEECT-TTTTTCTTCCEEE
T ss_pred             cceEEEee--eecHHHHHHHHHhcCCCeEEECCCCCcceecHhh-hhCCCCCCEEECCcccceehH-HHhhCChhccEEE
Confidence            34444443  2444455555556888999988876443111111 235888888888765321111 1124788888 88


Q ss_pred             EeeCCCCCHHHHHHHHHcCCCCCEEecccC
Q 021717          203 SLRCTTLNRDALILILDGLQNLEVLNISHC  232 (308)
Q Consensus       203 ~L~~~~it~~~l~~l~~~~p~L~~L~l~~C  232 (308)
                      ++.. .++.-+ ...+.+|++|+.|++.+.
T Consensus       280 ~l~~-~l~~I~-~~aF~~c~~L~~l~l~~n  307 (329)
T 3sb4_A          280 ELPA-SVTAIE-FGAFMGCDNLRYVLATGD  307 (329)
T ss_dssp             EECT-TCCEEC-TTTTTTCTTEEEEEECSS
T ss_pred             EEcc-cceEEc-hhhhhCCccCCEEEeCCC
Confidence            8874 322111 023467888998888643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=88.41  E-value=0.005  Score=54.11  Aligned_cols=12  Identities=8%  Similarity=-0.111  Sum_probs=6.9

Q ss_pred             CCCCEEecccCC
Q 021717          222 QNLEVLNISHCL  233 (308)
Q Consensus       222 p~L~~L~l~~C~  233 (308)
                      ..|+.|+++++.
T Consensus       154 ~~l~~L~L~~N~  165 (350)
T 4ay9_X          154 FESVILWLNKNG  165 (350)
T ss_dssp             SSCEEEECCSSC
T ss_pred             hhhhhhcccccc
Confidence            346666666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=86.61  E-value=0.16  Score=45.07  Aligned_cols=99  Identities=15%  Similarity=0.233  Sum_probs=55.6

Q ss_pred             hCCCCcEEEcCCCC-CCCHHHHHHHHhcCCCCCEEEeCCC--CCChHHHHHHHHcCCCCCeeEecCCCCHHHHHHHHhcC
Q 021717          120 RCPQLKRLVMPAWN-RIKKTGICKAIRMWRDLESLTMPSI--ANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYL  196 (308)
Q Consensus       120 ~~~~L~~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~  196 (308)
                      .|.+|+.+.++... .+..    .....|++|+++.+...  .+.+..+    ..|.+|+.+.|...++.-+-. ...+|
T Consensus       263 ~c~~L~~i~lp~~~~~I~~----~aF~~c~~L~~i~l~~~i~~I~~~aF----~~c~~L~~i~lp~~v~~I~~~-aF~~C  333 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVSIGT----GAFMNCPALQDIEFSSRITELPESVF----AGCISLKSIDIPEGITQILDD-AFAGC  333 (394)
T ss_dssp             TCSSCCEEECCTTCCEECT----TTTTTCTTCCEEECCTTCCEECTTTT----TTCTTCCEEECCTTCCEECTT-TTTTC
T ss_pred             ecccccEEecccccceecC----cccccccccccccCCCcccccCceee----cCCCCcCEEEeCCcccEehHh-HhhCC
Confidence            46777777776431 1111    23456778888877643  2232222    257888888886542210001 12467


Q ss_pred             CCCcEEEeeC--CCCCHHHHHHHHHcCCCCCEEeccc
Q 021717          197 PKLKVLSLRC--TTLNRDALILILDGLQNLEVLNISH  231 (308)
Q Consensus       197 p~L~~L~L~~--~~it~~~l~~l~~~~p~L~~L~l~~  231 (308)
                      .+|+.+.|..  ..|.+.    .+.+|++|+.+++.+
T Consensus       334 ~~L~~i~ip~sv~~I~~~----aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          334 EQLERIAIPSSVTKIPES----AFSNCTALNNIEYSG  366 (394)
T ss_dssp             TTCCEEEECTTCCBCCGG----GGTTCTTCCEEEESS
T ss_pred             CCCCEEEECcccCEEhHh----HhhCCCCCCEEEECC
Confidence            8888888852  224333    245688888887764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=86.33  E-value=0.21  Score=44.27  Aligned_cols=99  Identities=12%  Similarity=0.173  Sum_probs=60.3

Q ss_pred             hhCCCCcEEEcCCC-CCCCHHHHHHHHhcCCCCCEEEeCCC--CCChHHHHHHHHcCCCCCeeEecCCCCHHHHHHHHhc
Q 021717          119 ERCPQLKRLVMPAW-NRIKKTGICKAIRMWRDLESLTMPSI--ANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMY  195 (308)
Q Consensus       119 ~~~~~L~~L~L~~~-~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~  195 (308)
                      ..|++|+.+.++.. ..+.+    ..+..|.+|+++++...  .+.+.++    ..|.+|+++.|...++.-+-.+ ..+
T Consensus       285 ~~c~~L~~i~l~~~i~~I~~----~aF~~c~~L~~i~lp~~v~~I~~~aF----~~C~~L~~i~ip~sv~~I~~~a-F~~  355 (394)
T 4gt6_A          285 MNCPALQDIEFSSRITELPE----SVFAGCISLKSIDIPEGITQILDDAF----AGCEQLERIAIPSSVTKIPESA-FSN  355 (394)
T ss_dssp             TTCTTCCEEECCTTCCEECT----TTTTTCTTCCEEECCTTCCEECTTTT----TTCTTCCEEEECTTCCBCCGGG-GTT
T ss_pred             ccccccccccCCCcccccCc----eeecCCCCcCEEEeCCcccEehHhHh----hCCCCCCEEEECcccCEEhHhH-hhC
Confidence            36899999999753 12222    24568999999999765  2333333    3699999999976533211112 358


Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecc
Q 021717          196 LPKLKVLSLRCTTLNRDALILILDGLQNLEVLNIS  230 (308)
Q Consensus       196 ~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~  230 (308)
                      |++|+.+++.++..   .. .-+..|.+|+.+.+.
T Consensus       356 C~~L~~i~~~~~~~---~~-~~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          356 CTALNNIEYSGSRS---QW-NAISTDSGLQNLPVA  386 (394)
T ss_dssp             CTTCCEEEESSCHH---HH-HTCBCCCCC------
T ss_pred             CCCCCEEEECCcee---eh-hhhhccCCCCEEEeC
Confidence            99999999987532   12 223458888888775

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=85.62  E-value=0.035  Score=48.63  Aligned_cols=111  Identities=15%  Similarity=0.128  Sum_probs=63.8

Q ss_pred             CCCcEEEcCCCCCCCHHHHH-HHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEe-cCC-CCHHHHHHHHhcCCC
Q 021717          122 PQLKRLVMPAWNRIKKTGIC-KAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKI-MGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l-~~~-~~~~~~~~l~~~~p~  198 (308)
                      +++++|+|++. .++.  +. ..+..+++|++|+|+++.+....-......+++|+++.+ .++ +..-. ......+++
T Consensus        30 ~~l~~L~Ls~N-~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~  105 (350)
T 4ay9_X           30 RNAIELRFVLT-KLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPN  105 (350)
T ss_dssp             TTCSEEEEESC-CCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTT
T ss_pred             CCCCEEEccCC-cCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-chhhhhccc
Confidence            57999999976 3432  11 235678999999999986432111111224667666444 322 22100 012347899


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcCC
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV  237 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~  237 (308)
                      |++|+++++.++...- .......++..|++.++..++.
T Consensus       106 L~~L~l~~n~l~~~~~-~~~~~~~~l~~l~l~~~~~i~~  143 (350)
T 4ay9_X          106 LQYLLISNTGIKHLPD-VHKIHSLQKVLLDIQDNINIHT  143 (350)
T ss_dssp             CCEEEEEEECCSSCCC-CTTCCBSSCEEEEEESCTTCCE
T ss_pred             cccccccccccccCCc-hhhcccchhhhhhhcccccccc
Confidence            9999999777642110 0112345677888887766653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	308
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	3e-06
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	4e-04
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	0.002

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (97), Expect = 3e-06
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 11 WEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLW 52
          W+ L +++L+ IF    + EL   ++ VC  W     D  LW
Sbjct: 1  WDSLPDELLLGIFSCLCLPELLK-VSGVCKRWYRLASDESLW 41

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 4e-04
 Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 1/48 (2%)

Query: 12 EDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSM 59
              + I   I    D   L +    VC  W     D +LWK L   M
Sbjct: 16 ARGLDHIAENILSYLDAKSLCA-AELVCKEWYRVTSDGMLWKKLIERM 62

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 10 RWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTL 55
              L  ++ + +    +  +L    A  C  WR    D LLW+  
Sbjct: 18 FISLLPKELALYVLSFLEPKDLLQ-AAQTCRYWRILAEDNLLWREK 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	308
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.64
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.1
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.03
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	99.01
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.97
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.93
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.91
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.76
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.7
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.7
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.59
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.37
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.25
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.1
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.05
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.94
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.91
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.81
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.52
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.47
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.39
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.39
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.34
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.28
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.23
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	96.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	96.55
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.34
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.34
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	96.21
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	96.08
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	95.97
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	95.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	95.79
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.4
d2ifga3	156	High affinity nerve growth factor receptor, N-term	93.92
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	93.86
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	90.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	90.25
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	89.76

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.6e-16  Score=132.41  Aligned_cols=143  Identities=19%  Similarity=0.177  Sum_probs=106.9

Q ss_pred             HhcCCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCC-CCChHHHH-HHH
Q 021717           92 SLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLME-EIA  169 (308)
Q Consensus        92 ~~s~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~l~-~l~  169 (308)
                      ...+.+++++.+.++ .+++..+..++ .+++|++|++++|..+++.++..++..||+|++|++++| .++++.+. .+.
T Consensus        67 ~~~c~~L~~L~L~~~-~l~~~~~~~l~-~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~  144 (284)
T d2astb2          67 LSQCSKLQNLSLEGL-RLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA  144 (284)
T ss_dssp             HTTBCCCSEEECTTC-BCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred             HHhCCCccccccccc-CCCcHHHHHHh-cCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhc
Confidence            334677888888776 46777777766 477888888888888888888888888888888888887 56666654 345


Q ss_pred             HcCCCCCeeEecCC---CCHHHHHHHHhcCCCCcEEEee-CCCCCHHHHHHHHHcCCCCCEEecccCCCcCC
Q 021717          170 QNCRNFRELKIMGP---FDLLFASTLNMYLPKLKVLSLR-CTTLNRDALILILDGLQNLEVLNISHCLLIDV  237 (308)
Q Consensus       170 ~~~~~L~~L~l~~~---~~~~~~~~l~~~~p~L~~L~L~-~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~  237 (308)
                      ..+++|+.|++.++   +++.++..++.+||+|++|+++ +..+++.++..+ ..||+|++|++++|..+++
T Consensus       145 ~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l-~~~~~L~~L~L~~C~~i~~  215 (284)
T d2astb2         145 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIP  215 (284)
T ss_dssp             HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCG
T ss_pred             ccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhh-cccCcCCEEECCCCCCCCh
Confidence            55678888888764   6777777777788888888887 456787776665 3578888888888887775

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=7.5e-16  Score=131.59  Aligned_cols=139  Identities=14%  Similarity=0.176  Sum_probs=122.5

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHh-cCCCCCEEEeCCC--CCChHHHHHHHHc
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIR-MWRDLESLTMPSI--ANPPYLMEEIAQN  171 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~--~~~~~~l~~l~~~  171 (308)
                      .+.++.+.+.++..+++..+..++..|++|++|++++|..+++.++...+. .+++|++|+++++  .+++..+..++.+
T Consensus        94 ~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~  173 (284)
T d2astb2          94 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR  173 (284)
T ss_dssp             CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred             CCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccc
Confidence            578999999999999999999999999999999999999999998876554 5689999999986  5889999999999


Q ss_pred             CCCCCeeEecCC--CCHHHHHHHHhcCCCCcEEEee-CCCCCHHHHHHHHHcCCCCCEEecccCCCcCC
Q 021717          172 CRNFRELKIMGP--FDLLFASTLNMYLPKLKVLSLR-CTTLNRDALILILDGLQNLEVLNISHCLLIDV  237 (308)
Q Consensus       172 ~~~L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~-~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~  237 (308)
                      ||+|++|+++++  +++..+..+. .+|+|++|+|+ |..+++.++..+ ..+|+|++|++++|  +++
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~-~~~~L~~L~L~~C~~i~~~~l~~L-~~~~~L~~L~l~~~--~~d  238 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI--VPD  238 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS--SCT
T ss_pred             cccccccccccccCCCchhhhhhc-ccCcCCEEECCCCCCCChHHHHHH-hcCCCCCEEeeeCC--CCH
Confidence            999999999886  7777766665 79999999999 578999998775 56999999999999  554

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.9e-15  Score=87.55  Aligned_cols=41  Identities=32%  Similarity=0.797  Sum_probs=39.6

Q ss_pred             cCCCCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCcc
Q 021717           11 WEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLW   52 (308)
Q Consensus        11 ~~~LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw   52 (308)
                      |+.||+||+.+||+||+.+|+++ +++|||+|++++.++.+|
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~-~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLK-VSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHH-HHTTCHHHHHHHTCGGGC
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhCCcccC
Confidence            78999999999999999999999 999999999999999888

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.10  E-value=2.9e-09  Score=82.48  Aligned_cols=122  Identities=11%  Similarity=0.071  Sum_probs=99.4

Q ss_pred             HHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHh---cCCCCCEEEeCCCCCChHHHHHHHH---cCCCCCeeEecCC-
Q 021717          111 DDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIR---MWRDLESLTMPSIANPPYLMEEIAQ---NCRNFRELKIMGP-  183 (308)
Q Consensus       111 d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~---~~~~L~~L~l~~~~~~~~~l~~l~~---~~~~L~~L~l~~~-  183 (308)
                      ++.+..+....|+|++|+|.+...+++.++..++.   ..++|++|+++++.++++....++.   ..+.|+.+.+.++ 
T Consensus         6 ~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_           6 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc
Confidence            56788888889999999999877899988666554   7889999999999999887776654   5689999999887 


Q ss_pred             CCHHHHHHHH---hcCCCCcEEEee--CCCCCHHHHHHH---HHcCCCCCEEecccC
Q 021717          184 FDLLFASTLN---MYLPKLKVLSLR--CTTLNRDALILI---LDGLQNLEVLNISHC  232 (308)
Q Consensus       184 ~~~~~~~~l~---~~~p~L~~L~L~--~~~it~~~l~~l---~~~~p~L~~L~l~~C  232 (308)
                      ++++++..++   ...++|+.++|.  ++.+++++...+   ++.+++|+.|++...
T Consensus        86 ~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          86 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             ccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            8888877775   466889988776  678999875555   457999999999754

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.03  E-value=5.1e-09  Score=81.22  Aligned_cols=122  Identities=12%  Similarity=0.151  Sum_probs=96.8

Q ss_pred             HHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHH---HhcCCCCCEEEeCCCCCChHHHHHHHH---cCCCCCeeEecCC-
Q 021717          111 DDQLTYTAERCPQLKRLVMPAWNRIKKTGICKA---IRMWRDLESLTMPSIANPPYLMEEIAQ---NCRNFRELKIMGP-  183 (308)
Q Consensus       111 d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~l~~~~~~~~~l~~l~~---~~~~L~~L~l~~~-  183 (308)
                      ++.+..+....|+|++|+|+++..++++++..+   +...+.|++|++++|.++++....++.   .++.|++|+++++ 
T Consensus         4 ~~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~   83 (167)
T d1pgva_           4 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF   83 (167)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             HHHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh
Confidence            467888888899999999998777888876555   456788999999999988877655543   5789999999988 


Q ss_pred             CCHHHHHHHHhc---CCCCcEEEeeCC---CCCHHH---HHHHHHcCCCCCEEecccC
Q 021717          184 FDLLFASTLNMY---LPKLKVLSLRCT---TLNRDA---LILILDGLQNLEVLNISHC  232 (308)
Q Consensus       184 ~~~~~~~~l~~~---~p~L~~L~L~~~---~it~~~---l~~l~~~~p~L~~L~l~~C  232 (308)
                      ++++++..++..   .+.|++|++.++   .+++++   +...+...+.|+.|+++..
T Consensus        84 i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          84 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             cchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            898888777654   567999999855   466666   4555567899999999764

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.01  E-value=2.1e-11  Score=86.64  Aligned_cols=48  Identities=25%  Similarity=0.398  Sum_probs=43.0

Q ss_pred             cCCCCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhc-cCCCcceeeeccc
Q 021717           11 WEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSAC-CDPLLWKTLDLSM   59 (308)
Q Consensus        11 ~~~LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~-~~p~lw~~i~l~~   59 (308)
                      ++.||+||+.+||+||+..|+++ +++|||+|++++ .++.+|+++.+..
T Consensus         6 ~~~LP~Ell~~I~s~Ld~~dL~~-~s~Vcr~W~~~~~~d~~LWr~l~~~~   54 (100)
T d1nexb1           6 ITSLPFEISLKIFNYLQFEDIIN-SLGVSQNWNKIIRKSTSLWKKLLISE   54 (100)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHH-HTTTCHHHHHHHHTCSHHHHHHHHHT
T ss_pred             hhhCCHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            47899999999999999999999 999999999987 4589999886653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.97  E-value=2.3e-08  Score=86.48  Aligned_cols=139  Identities=17%  Similarity=0.179  Sum_probs=87.5

Q ss_pred             cCCCccEEEccCCCCCCHHHHHH---HHhhCCCCcEEEcCCCCCCCHHHHHH----HHhcCCCCCEEEeCCCCCChHHHH
Q 021717           94 SRGSIRTLIFHFNLYVSDDQLTY---TAERCPQLKRLVMPAWNRIKKTGICK----AIRMWRDLESLTMPSIANPPYLME  166 (308)
Q Consensus        94 s~~~l~~l~l~~~~~~~d~~l~~---l~~~~~~L~~L~L~~~~~~~~~~l~~----~~~~~~~L~~L~l~~~~~~~~~l~  166 (308)
                      ....++.+.+..+ .+++..+..   ....++.|+.|+|+.+ .+++.++..    .+..+++|+.|+++++.+++....
T Consensus       156 ~~~~L~~l~l~~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~  233 (344)
T d2ca6a1         156 NAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS  233 (344)
T ss_dssp             TCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH
T ss_pred             cCcccceeecccc-cccccccccccchhhhhhhhcccccccc-cccccccccchhhhhcchhhhcccccccccccccccc
Confidence            3455666666543 334333322   2345677888887766 566655433    244667788888877777665554


Q ss_pred             HHH---HcCCCCCeeEecCC-CCHHHHHHHHhc-----CCCCcEEEeeCCCCCHHHHHHHHH----cCCCCCEEecccCC
Q 021717          167 EIA---QNCRNFRELKIMGP-FDLLFASTLNMY-----LPKLKVLSLRCTTLNRDALILILD----GLQNLEVLNISHCL  233 (308)
Q Consensus       167 ~l~---~~~~~L~~L~l~~~-~~~~~~~~l~~~-----~p~L~~L~L~~~~it~~~l~~l~~----~~p~L~~L~l~~C~  233 (308)
                      .++   ..+++|++|+++++ +++.++..++..     .+.|++|+++++.++++++..+.+    ++++|+.|+|+++.
T Consensus       234 ~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         234 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             cccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            443   35677888888777 777766666532     356778888877787777655543    46778888887655


Q ss_pred             C
Q 021717          234 L  234 (308)
Q Consensus       234 ~  234 (308)
                      .
T Consensus       314 ~  314 (344)
T d2ca6a1         314 F  314 (344)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2e-10  Score=81.78  Aligned_cols=47  Identities=21%  Similarity=0.377  Sum_probs=43.4

Q ss_pred             CcCCCCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCcceeeec
Q 021717           10 RWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDL   57 (308)
Q Consensus        10 ~~~~LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~l   57 (308)
                      .++.||+||+.+||+||+..|+++ +++|||+|+.++.++.+|+..-.
T Consensus        18 ~i~~LP~Eil~~Ils~Ld~~dL~~-~~~vcr~w~~l~~~~~lW~~~~~   64 (102)
T d2ovrb1          18 FISLLPKELALYVLSFLEPKDLLQ-AAQTCRYWRILAEDNLLWREKCK   64 (102)
T ss_dssp             TTTSSCHHHHHHHHTTSCHHHHHH-HTTSCHHHHHHHTCSHHHHHHHT
T ss_pred             ChhhCCHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHHCCHHHHHHHHH
Confidence            468899999999999999999999 99999999999999999987643

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2e-09  Score=95.99  Aligned_cols=122  Identities=18%  Similarity=0.146  Sum_probs=90.0

Q ss_pred             CccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHH---HHHhcCCCCCEEEeCCCCCChHHHHHHHHc--
Q 021717           97 SIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGIC---KAIRMWRDLESLTMPSIANPPYLMEEIAQN--  171 (308)
Q Consensus        97 ~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~---~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~--  171 (308)
                      .++.+.+++ ..+++..+..+...++++++|+|.+| .+++.++.   ..+..+++|++|+++++.+++..+..++..  
T Consensus         3 ~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            356777754 46788887787788888888888888 57776654   345788888899888888887777777653  


Q ss_pred             --CCCCCeeEecCC-CCHHHHHHHH---hcCCCCcEEEeeCCCCCHHHHHHHHHc
Q 021717          172 --CRNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTTLNRDALILILDG  220 (308)
Q Consensus       172 --~~~L~~L~l~~~-~~~~~~~~l~---~~~p~L~~L~L~~~~it~~~l~~l~~~  220 (308)
                        .++|++|+++++ +++.++..+.   ..+++|++|+++++.+++.++..+...
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~  135 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG  135 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhc
Confidence              347888888877 6665554443   467888888888888888877666554

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=9.4e-10  Score=80.32  Aligned_cols=46  Identities=28%  Similarity=0.493  Sum_probs=41.6

Q ss_pred             CCCC----HHHHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCcceeeecc
Q 021717           12 EDLD----NDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLS   58 (308)
Q Consensus        12 ~~LP----~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~l~   58 (308)
                      ..||    +||+.+||+||+..|+++ +++|||+|++++.++.+|+++...
T Consensus        12 ~~LP~~l~~EI~~~Ils~Ld~~dL~~-~s~Vck~W~~l~~d~~lWk~~~~~   61 (118)
T d1p22a1          12 TALPARGLDHIAENILSYLDAKSLCA-AELVCKEWYRVTSDGMLWKKLIER   61 (118)
T ss_dssp             HHTGGGTCHHHHHHHHTTCCHHHHHH-HHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHCCCCChHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHHcCHHHHHHHHHh
Confidence            5677    699999999999999999 999999999999999999987543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.70  E-value=3.6e-07  Score=78.68  Aligned_cols=112  Identities=21%  Similarity=0.282  Sum_probs=62.6

Q ss_pred             CCCCcEEEcCCCCCCCHHH---HHHHHhcCCCCCEEEeCCCCCChHHHHHH----HHcCCCCCeeEecCC-CCHHHHHHH
Q 021717          121 CPQLKRLVMPAWNRIKKTG---ICKAIRMWRDLESLTMPSIANPPYLMEEI----AQNCRNFRELKIMGP-FDLLFASTL  192 (308)
Q Consensus       121 ~~~L~~L~L~~~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~l~~l----~~~~~~L~~L~l~~~-~~~~~~~~l  192 (308)
                      .+.|+.+.+... .+++.+   +...+..++.|++|+++++.++++.+..+    ...+++|+.|+++++ +++.+...+
T Consensus       157 ~~~L~~l~l~~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         157 APPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             CCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             Ccccceeecccc-cccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence            445555555543 333322   33334556667777776666665443221    234566777777665 555544333


Q ss_pred             ---HhcCCCCcEEEeeCCCCCHHHHHHHHHc-----CCCCCEEecccCC
Q 021717          193 ---NMYLPKLKVLSLRCTTLNRDALILILDG-----LQNLEVLNISHCL  233 (308)
Q Consensus       193 ---~~~~p~L~~L~L~~~~it~~~l~~l~~~-----~p~L~~L~l~~C~  233 (308)
                         ...+++|++|+|+++.+++.++..+...     .+.|++|+++++.
T Consensus       236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc
Confidence               2456677777777667777666655432     2457777777654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=5.9e-08  Score=86.18  Aligned_cols=95  Identities=8%  Similarity=0.063  Sum_probs=47.5

Q ss_pred             CCccEEEccCCCCCCHHHHHHHH---hhCCCCcEEEcCCCCCCCHHHHHHHHhcC----CCCCEEEeCCCCCChHHHHHH
Q 021717           96 GSIRTLIFHFNLYVSDDQLTYTA---ERCPQLKRLVMPAWNRIKKTGICKAIRMW----RDLESLTMPSIANPPYLMEEI  168 (308)
Q Consensus        96 ~~l~~l~l~~~~~~~d~~l~~l~---~~~~~L~~L~L~~~~~~~~~~l~~~~~~~----~~L~~L~l~~~~~~~~~l~~l  168 (308)
                      ..++.+.+..| .+++..+..++   ..+++|++|+|+++ .+++.++..+...+    .+|++|++++|.+++..+..+
T Consensus        27 ~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l  104 (460)
T d1z7xw1          27 QQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  104 (460)
T ss_dssp             TTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccc
Confidence            34455555554 34555444443   34556666666554 45555554444322    346666666665555444333


Q ss_pred             HH---cCCCCCeeEecCC-CCHHHHHHH
Q 021717          169 AQ---NCRNFRELKIMGP-FDLLFASTL  192 (308)
Q Consensus       169 ~~---~~~~L~~L~l~~~-~~~~~~~~l  192 (308)
                      +.   .+++|++|+++++ +++.++..+
T Consensus       105 ~~~l~~~~~L~~L~L~~N~i~~~~~~~l  132 (460)
T d1z7xw1         105 SSTLRTLPTLQELHLSDNLLGDAGLQLL  132 (460)
T ss_dssp             HHHTTSCTTCCEEECCSSBCHHHHHHHH
T ss_pred             cchhhccccccccccccccchhhhhhhh
Confidence            32   3455666666554 444443333

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.59  E-value=2.3e-06  Score=65.55  Aligned_cols=126  Identities=13%  Similarity=0.076  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHh---hCCCCcEEEcCCCCCCCHHHHHH---HHhcCCCCCEEEeC
Q 021717           83 LTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAE---RCPQLKRLVMPAWNRIKKTGICK---AIRMWRDLESLTMP  156 (308)
Q Consensus        83 l~~~l~~~~~~s~~~l~~l~l~~~~~~~d~~l~~l~~---~~~~L~~L~L~~~~~~~~~~l~~---~~~~~~~L~~L~l~  156 (308)
                      +.+.+.. +....+.++++.++....++++.+..++.   .+++|++|+++++ .+++.+...   .+...+.|+.++++
T Consensus         5 i~~~l~~-~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~   82 (166)
T d1io0a_           5 VEETLKR-IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVE   82 (166)
T ss_dssp             HHHHHHH-HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             HHHHHHH-HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhc
Confidence            3444554 34457899999998777889999887775   5789999999998 777776544   55678999999999


Q ss_pred             CCCCChHHHHHHHH---cCCCCCeeEecCC---CCHHHHHHHH---hcCCCCcEEEeeCCCCC
Q 021717          157 SIANPPYLMEEIAQ---NCRNFRELKIMGP---FDLLFASTLN---MYLPKLKVLSLRCTTLN  210 (308)
Q Consensus       157 ~~~~~~~~l~~l~~---~~~~L~~L~l~~~---~~~~~~~~l~---~~~p~L~~L~L~~~~it  210 (308)
                      ++.++++....++.   .++.|+.++|..+   +++.+..+++   ...++|++|++..+...
T Consensus        83 ~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          83 SNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             SSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             cccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence            99999988877774   5688998777532   7887766664   47899999999866543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.53  E-value=4.5e-07  Score=69.86  Aligned_cols=96  Identities=15%  Similarity=0.171  Sum_probs=78.7

Q ss_pred             HHHHHHHhcCCCCCEEEeCCC-CCChHHHHHHHH---cCCCCCeeEecCC-CCHHHHHHHH---hcCCCCcEEEeeCCCC
Q 021717          138 TGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQ---NCRNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTTL  209 (308)
Q Consensus       138 ~~l~~~~~~~~~L~~L~l~~~-~~~~~~l~~l~~---~~~~L~~L~l~~~-~~~~~~~~l~---~~~p~L~~L~L~~~~i  209 (308)
                      +.+..+....|.|++|+|+++ .++++.+..++.   ..+.|++|+++++ +++.++..++   ...+.|++|+|+++.+
T Consensus         5 ~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i   84 (167)
T d1pgva_           5 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL   84 (167)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             HHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhc
Confidence            456777788999999999975 688887776654   4678999999987 8887765554   4678999999999999


Q ss_pred             CHHHHHHHHHc---CCCCCEEecccCC
Q 021717          210 NRDALILILDG---LQNLEVLNISHCL  233 (308)
Q Consensus       210 t~~~l~~l~~~---~p~L~~L~l~~C~  233 (308)
                      +++++..+...   ++.|++|+++++.
T Consensus        85 ~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          85 TPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             CHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             chHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            99998877655   6789999998764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.4e-08  Score=78.29  Aligned_cols=39  Identities=28%  Similarity=0.199  Sum_probs=16.4

Q ss_pred             cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      .+|+|++|+++++.+++-.-..-+..+|+|++|++++|.
T Consensus        85 ~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          85 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             cccccccceeccccccccccccccccccccchhhcCCCc
Confidence            345555555554444321111112344555555555443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=7.6e-08  Score=73.96  Aligned_cols=125  Identities=14%  Similarity=0.081  Sum_probs=84.0

Q ss_pred             CccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCC
Q 021717           97 SIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFR  176 (308)
Q Consensus        97 ~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~  176 (308)
                      .++++.+.++.-..-   ..+...+++|+.|+|++. .++.  + ..+..+++|++|++++|.++.-. ..+...+|+|+
T Consensus        19 ~lr~L~L~~n~I~~i---~~~~~~l~~L~~L~Ls~N-~i~~--l-~~~~~l~~L~~L~ls~N~i~~l~-~~~~~~l~~L~   90 (162)
T d1a9na_          19 RDRELDLRGYKIPVI---ENLGATLDQFDAIDFSDN-EIRK--L-DGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLT   90 (162)
T ss_dssp             SCEEEECTTSCCCSC---CCGGGGTTCCSEEECCSS-CCCE--E-CCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTCC
T ss_pred             cCcEEECCCCCCCcc---CccccccccCCEEECCCC-CCCc--c-CCcccCcchhhhhcccccccCCC-ccccccccccc
Confidence            456677766432111   123456789999999987 4432  1 12568899999999999765311 12334689999


Q ss_pred             eeEecCC-CCH-HHHHHHHhcCCCCcEEEeeCCCCCHHH--HHHHHHcCCCCCEEecc
Q 021717          177 ELKIMGP-FDL-LFASTLNMYLPKLKVLSLRCTTLNRDA--LILILDGLQNLEVLNIS  230 (308)
Q Consensus       177 ~L~l~~~-~~~-~~~~~l~~~~p~L~~L~L~~~~it~~~--l~~l~~~~p~L~~L~l~  230 (308)
                      .|.+.++ +.+ ..+.. ...+|+|++|+++++.+++..  -..++..+|+|+.||-.
T Consensus        91 ~L~L~~N~i~~~~~l~~-l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          91 ELILTNNSLVELGDLDP-LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             EEECCSCCCCCGGGGGG-GGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cceeccccccccccccc-cccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            9999987 443 22223 358999999999988775432  12456779999999854

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.10  E-value=2.7e-07  Score=67.43  Aligned_cols=85  Identities=19%  Similarity=0.155  Sum_probs=49.3

Q ss_pred             HhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCC
Q 021717          144 IRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQ  222 (308)
Q Consensus       144 ~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p  222 (308)
                      +..+++|++|+++++.+..- -..+. .+++|+.|+++++ ++.-  .. ...+|+|++|+++++.+++-.-..-+..+|
T Consensus        16 l~~l~~L~~L~ls~N~l~~l-p~~~~-~l~~L~~L~l~~N~i~~l--~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~   90 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRAL-PPALA-ALRCLEVLQASDNALENV--DG-VANLPRLQELLLCNNRLQQSAAIQPLVSCP   90 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCC-CGGGG-GCTTCCEEECCSSCCCCC--GG-GTTCSSCCEEECCSSCCCSSSTTGGGGGCT
T ss_pred             cccCCCCCEEECCCCccCcc-hhhhh-hhhccccccccccccccc--Cc-cccccccCeEECCCCccCCCCCchhhcCCC
Confidence            45667777777777755421 01222 4677777777765 3321  11 246777777777777765432112235677


Q ss_pred             CCCEEecccCC
Q 021717          223 NLEVLNISHCL  233 (308)
Q Consensus       223 ~L~~L~l~~C~  233 (308)
                      +|+.|++++..
T Consensus        91 ~L~~L~l~~N~  101 (124)
T d1dcea3          91 RLVLLNLQGNS  101 (124)
T ss_dssp             TCCEEECTTSG
T ss_pred             CCCEEECCCCc
Confidence            77777777644

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.05  E-value=2.7e-07  Score=67.48  Aligned_cols=103  Identities=19%  Similarity=0.219  Sum_probs=72.5

Q ss_pred             hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCC
Q 021717          119 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLP  197 (308)
Q Consensus       119 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p  197 (308)
                      ..+++|++|++++. .++.  +...+..+++|+.|+++++.++.  +..++ .+|+|++|.+.++ +.+-........+|
T Consensus        17 ~~l~~L~~L~ls~N-~l~~--lp~~~~~l~~L~~L~l~~N~i~~--l~~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~~~   90 (124)
T d1dcea3          17 EQLLLVTHLDLSHN-RLRA--LPPALAALRCLEVLQASDNALEN--VDGVA-NLPRLQELLLCNNRLQQSAAIQPLVSCP   90 (124)
T ss_dssp             GGGTTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCSSCCCC--CGGGT-TCSSCCEEECCSSCCCSSSTTGGGGGCT
T ss_pred             ccCCCCCEEECCCC-ccCc--chhhhhhhhcccccccccccccc--cCccc-cccccCeEECCCCccCCCCCchhhcCCC
Confidence            35789999999976 4432  22346789999999999997653  22333 5899999999886 43221112235899


Q ss_pred             CCcEEEeeCCCCCHHH--HHHHHHcCCCCCEE
Q 021717          198 KLKVLSLRCTTLNRDA--LILILDGLQNLEVL  227 (308)
Q Consensus       198 ~L~~L~L~~~~it~~~--l~~l~~~~p~L~~L  227 (308)
                      +|+.|+++++.+++..  ...+...+|+|+.|
T Consensus        91 ~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          91 RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             TCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            9999999988876422  34566778999877

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.94  E-value=4.2e-07  Score=72.09  Aligned_cols=58  Identities=21%  Similarity=0.080  Sum_probs=25.2

Q ss_pred             CCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCC
Q 021717          148 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTT  208 (308)
Q Consensus       148 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~  208 (308)
                      ++|+.|+++++.++.  +..+. .+++|+.|+++++ +++-........+|+|+.|+|+++.
T Consensus        93 ~~L~~L~l~~N~i~~--l~~~~-~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_          93 DTLEELWISYNQIAS--LSGIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHCCEEECSEEECCC--HHHHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ccccccccccccccc--ccccc-ccccccccccccchhccccccccccCCCccceeecCCCc
Confidence            345555555554432  12222 2445555555544 3322111122345555555555443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.91  E-value=2.9e-07  Score=73.07  Aligned_cols=106  Identities=23%  Similarity=0.182  Sum_probs=76.0

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      ..++|+.|+|+++ .+++  + ..+..+++|+.|++++|.++.  +..+...+++|+.|++.++ ++.-  .. ...+++
T Consensus        46 ~L~~L~~L~Ls~n-~I~~--i-~~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N~i~~l--~~-~~~l~~  116 (198)
T d1m9la_          46 TLKACKHLALSTN-NIEK--I-SSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASL--SG-IEKLVN  116 (198)
T ss_dssp             HTTTCCEEECSEE-EESC--C-CCHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEEECCCH--HH-HHHHHH
T ss_pred             cccccceeECccc-CCCC--c-ccccCCccccChhhccccccc--cccccccccccccccccccccccc--cc-cccccc
Confidence            5789999999976 3432  1 125678999999999996542  1122233568999999887 5432  22 347899


Q ss_pred             CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCC
Q 021717          199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  234 (308)
Q Consensus       199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~  234 (308)
                      |+.|+++++.+++-.-..-+..+|+|+.|+++++..
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCcc
Confidence            999999999988654334467899999999998753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.81  E-value=1.3e-05  Score=63.13  Aligned_cols=124  Identities=18%  Similarity=0.159  Sum_probs=68.0

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  174 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~  174 (308)
                      ..+++.+.+..+...+-.   . ...+++|+.|.+..+......    .+..++.|+.|+++++.....  .. ...+++
T Consensus        61 l~nL~~L~Ls~N~l~~~~---~-l~~l~~L~~L~l~~n~~~~~~----~l~~l~~L~~L~l~~~~~~~~--~~-~~~l~~  129 (199)
T d2omxa2          61 LNNLTQINFSNNQLTDIT---P-LKNLTKLVDILMNNNQIADIT----PLANLTNLTGLTLFNNQITDI--DP-LKNLTN  129 (199)
T ss_dssp             CTTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCCCC--GG-GTTCTT
T ss_pred             CCCcCcCccccccccCcc---c-ccCCccccccccccccccccc----ccccccccccccccccccccc--cc-cchhhh
Confidence            345666666554322111   1 234667777777665333221    245667777777766643321  11 124677


Q ss_pred             CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      |+.|.++++ +...  .. ...+++|+.|++.++.+++-  .. +.++++|++|++++|. ++
T Consensus       130 L~~L~l~~n~l~~~--~~-l~~~~~L~~L~l~~n~l~~l--~~-l~~l~~L~~L~ls~N~-i~  185 (199)
T d2omxa2         130 LNRLELSSNTISDI--SA-LSGLTSLQQLNFSSNQVTDL--KP-LANLTTLERLDISSNK-VS  185 (199)
T ss_dssp             CSEEECCSSCCCCC--GG-GTTCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CC
T ss_pred             hHHhhhhhhhhccc--cc-ccccccccccccccccccCC--cc-ccCCCCCCEEECCCCC-CC
Confidence            777777665 2211  11 24677777777777766542  12 4567788888888774 44

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.2e-05  Score=61.26  Aligned_cols=87  Identities=20%  Similarity=0.082  Sum_probs=53.0

Q ss_pred             HHHHhcCCCCCEEEeCCCCCChH-HHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCH------H
Q 021717          141 CKAIRMWRDLESLTMPSIANPPY-LMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNR------D  212 (308)
Q Consensus       141 ~~~~~~~~~L~~L~l~~~~~~~~-~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~------~  212 (308)
                      ..+...+++|++|+++++.+++- .+......+|+|+.|+++++ +.+-...... ..++|+.|++.++.++.      .
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l-~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI-KGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHH-TTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhh-hccccceeecCCCCcCcCcccchh
Confidence            33445678888888888765531 22233345788888888776 3322112222 34568888888776642      2


Q ss_pred             HHHHHHHcCCCCCEEe
Q 021717          213 ALILILDGLQNLEVLN  228 (308)
Q Consensus       213 ~l~~l~~~~p~L~~L~  228 (308)
                      -...+.+.+|+|+.||
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence            3446667788888886

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.63  E-value=2.9e-05  Score=61.54  Aligned_cols=122  Identities=17%  Similarity=0.232  Sum_probs=79.4

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  174 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~  174 (308)
                      ..+++.+.++.+....   +..+ ..+++|+.|+++++ .+++  +. .+..+++|+.|+++++....  +..+ ..+++
T Consensus        67 l~~L~~L~L~~n~i~~---l~~~-~~l~~L~~L~l~~n-~i~~--l~-~l~~l~~L~~L~l~~~~~~~--~~~l-~~l~~  135 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTD---IKPL-ANLKNLGWLFLDEN-KVKD--LS-SLKDLKKLKSLSLEHNGISD--INGL-VHLPQ  135 (210)
T ss_dssp             CTTCCEEECCSSCCCC---CGGG-TTCTTCCEEECCSS-CCCC--GG-GGTTCTTCCEEECTTSCCCC--CGGG-GGCTT
T ss_pred             CCCCCEEeCCCccccC---cccc-ccCccccccccccc-cccc--cc-cccccccccccccccccccc--cccc-ccccc
Confidence            4568888887764322   1112 35788999999876 4543  11 35678899999998885442  1222 35788


Q ss_pred             CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      |+.+.+.++ +++..   ....+++|+.++++++.+++  +.. +..+++|+.|++++|.
T Consensus       136 l~~l~~~~n~l~~~~---~~~~l~~L~~l~l~~n~l~~--i~~-l~~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         136 LESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISD--IVP-LAGLTKLQNLYLSKNH  189 (210)
T ss_dssp             CCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCC--CGG-GTTCTTCCEEECCSSC
T ss_pred             ccccccccccccccc---cccccccccccccccccccc--ccc-ccCCCCCCEEECCCCC
Confidence            888888765 33211   23468888888888777764  222 4568888888888874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.52  E-value=4.4e-05  Score=59.89  Aligned_cols=122  Identities=19%  Similarity=0.157  Sum_probs=80.4

Q ss_pred             CccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCC
Q 021717           97 SIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFR  176 (308)
Q Consensus        97 ~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~  176 (308)
                      .++.+.+..+.-.+-+.    ...+++|+.|+++++ .+++.  . .+..+++|++|+++++.+..-  ..+ ..+++|+
T Consensus        41 ~l~~L~l~~~~i~~l~~----l~~l~nL~~L~Ls~N-~l~~~--~-~l~~l~~L~~L~l~~n~~~~~--~~l-~~l~~L~  109 (199)
T d2omxa2          41 QVTTLQADRLGIKSIDG----VEYLNNLTQINFSNN-QLTDI--T-PLKNLTKLVDILMNNNQIADI--TPL-ANLTNLT  109 (199)
T ss_dssp             TCCEEECTTSCCCCCTT----GGGCTTCCEEECCSS-CCCCC--G-GGTTCTTCCEEECCSSCCCCC--GGG-TTCTTCS
T ss_pred             CCCEEECCCCCCCCccc----cccCCCcCcCccccc-cccCc--c-cccCCcccccccccccccccc--ccc-ccccccc
Confidence            45666665543221111    246899999999987 44431  1 267889999999998854321  122 3688999


Q ss_pred             eeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021717          177 ELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  235 (308)
Q Consensus       177 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i  235 (308)
                      .|.++++ .....   ....+++|+.|+++++.++.-  . -+..+++|+.|++.+|...
T Consensus       110 ~L~l~~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~--~-~l~~~~~L~~L~l~~n~l~  163 (199)
T d2omxa2         110 GLTLFNNQITDID---PLKNLTNLNRLELSSNTISDI--S-ALSGLTSLQQLNFSSNQVT  163 (199)
T ss_dssp             EEECCSSCCCCCG---GGTTCTTCSEEECCSSCCCCC--G-GGTTCTTCSEEECCSSCCC
T ss_pred             ccccccccccccc---ccchhhhhHHhhhhhhhhccc--c-ccccccccccccccccccc
Confidence            9999876 22111   134789999999998877642  2 2467899999999988543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.47  E-value=4.3e-05  Score=60.50  Aligned_cols=121  Identities=15%  Similarity=0.220  Sum_probs=83.0

Q ss_pred             CccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCC
Q 021717           97 SIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFR  176 (308)
Q Consensus        97 ~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~  176 (308)
                      .++.+.+..+...+-..    .+.+++|++|+++++ .+++-  . .+..+++|+.|+++++.+++  +..+ ..+++|+
T Consensus        47 ~L~~L~l~~~~i~~l~~----l~~l~~L~~L~L~~n-~i~~l--~-~~~~l~~L~~L~l~~n~i~~--l~~l-~~l~~L~  115 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQG----IQYLPNVTKLFLNGN-KLTDI--K-PLANLKNLGWLFLDENKVKD--LSSL-KDLKKLK  115 (210)
T ss_dssp             TCCEEECTTSCCCCCTT----GGGCTTCCEEECCSS-CCCCC--G-GGTTCTTCCEEECCSSCCCC--GGGG-TTCTTCC
T ss_pred             CccEEECcCCCCCCchh----HhhCCCCCEEeCCCc-cccCc--c-ccccCccccccccccccccc--cccc-ccccccc
Confidence            45666665543222112    256899999999987 44431  1 24678999999999997764  2223 3578999


Q ss_pred             eeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCC
Q 021717          177 ELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  234 (308)
Q Consensus       177 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~  234 (308)
                      .|.+.++ ..+-  . ....+++|+.+++.++.+++..   ....+++|+.++++++..
T Consensus       116 ~L~l~~~~~~~~--~-~l~~l~~l~~l~~~~n~l~~~~---~~~~l~~L~~l~l~~n~l  168 (210)
T d1h6ta2         116 SLSLEHNGISDI--N-GLVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQI  168 (210)
T ss_dssp             EEECTTSCCCCC--G-GGGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCC
T ss_pred             cccccccccccc--c-cccccccccccccccccccccc---cccccccccccccccccc
Confidence            9999876 3221  1 2357899999999988877533   245689999999998854

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.39  E-value=5.2e-05  Score=60.65  Aligned_cols=125  Identities=17%  Similarity=0.086  Sum_probs=79.3

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  174 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~  174 (308)
                      ...++.+.+..+....   +..+ ..+++|+.+.+..+......    .....+.++.+.++.+.+....  . ...+++
T Consensus        84 l~~l~~l~~~~n~~~~---i~~l-~~l~~L~~l~l~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~--~-~~~~~~  152 (227)
T d1h6ua2          84 LTKITELELSGNPLKN---VSAI-AGLQSIKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNIS--P-LAGLTN  152 (227)
T ss_dssp             CCSCCEEECCSCCCSC---CGGG-TTCTTCCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCG--G-GGGCTT
T ss_pred             cccccccccccccccc---cccc-cccccccccccccccccccc----hhccccchhhhhchhhhhchhh--h-hccccc
Confidence            3456666665543222   1122 35789999999877443321    2456788888888877543221  1 235788


Q ss_pred             CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcCC
Q 021717          175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV  237 (308)
Q Consensus       175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~  237 (308)
                      |+.|.+.++ ..+..  . ..++++|+.|+++++.+++  +.. +.++|+|++|++++|. ++.
T Consensus       153 L~~L~l~~n~~~~~~--~-l~~l~~L~~L~Ls~n~l~~--l~~-l~~l~~L~~L~Ls~N~-lt~  209 (227)
T d1h6ua2         153 LQYLSIGNAQVSDLT--P-LANLSKLTTLKADDNKISD--ISP-LASLPNLIEVHLKNNQ-ISD  209 (227)
T ss_dssp             CCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECTTSC-CCB
T ss_pred             cccccccccccccch--h-hcccccceecccCCCccCC--Chh-hcCCCCCCEEECcCCc-CCC
Confidence            999998876 33211  1 3478899999998888765  222 4678999999999884 553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.39  E-value=7.9e-05  Score=59.54  Aligned_cols=122  Identities=14%  Similarity=0.075  Sum_probs=69.3

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  174 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~  174 (308)
                      ..+++.+.++.+.......    ...+++|+.+.+.++....-.    .+..+++|+.++++++...+.  ..+ ...+.
T Consensus        62 l~~L~~L~ls~n~i~~~~~----l~~l~~l~~l~~~~n~~~~i~----~l~~l~~L~~l~l~~~~~~~~--~~~-~~~~~  130 (227)
T d1h6ua2          62 LNNLIGLELKDNQITDLAP----LKNLTKITELELSGNPLKNVS----AIAGLQSIKTLDLTSTQITDV--TPL-AGLSN  130 (227)
T ss_dssp             CTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCCCSCCG----GGTTCTTCCEEECTTSCCCCC--GGG-TTCTT
T ss_pred             CCCCcEeecCCceeecccc----ccccccccccccccccccccc----ccccccccccccccccccccc--chh-ccccc
Confidence            4566777776543222111    345677888887766322211    245677888888877743321  111 23567


Q ss_pred             CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      ++.+.+..+ +....   -...+++|++|++.++.+++..  . +.++++|++|++++|.
T Consensus       131 ~~~l~~~~~~~~~~~---~~~~~~~L~~L~l~~n~~~~~~--~-l~~l~~L~~L~Ls~n~  184 (227)
T d1h6ua2         131 LQVLYLDLNQITNIS---PLAGLTNLQYLSIGNAQVSDLT--P-LANLSKLTTLKADDNK  184 (227)
T ss_dssp             CCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC
T ss_pred             hhhhhchhhhhchhh---hhccccccccccccccccccch--h-hcccccceecccCCCc
Confidence            777777654 22111   1246777888888776665321  1 3567888888887773

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.34  E-value=0.00011  Score=63.08  Aligned_cols=122  Identities=17%  Similarity=0.113  Sum_probs=74.3

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  174 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~  174 (308)
                      ...++.+.+..+....-.   . ...+++|+.|+++.+. ++..   ..+..++.++.+.+..+.+.+.  .. ...+++
T Consensus       240 l~~L~~L~l~~n~l~~~~---~-~~~~~~L~~L~l~~~~-l~~~---~~~~~~~~l~~l~~~~n~l~~~--~~-~~~~~~  308 (384)
T d2omza2         240 LTNLTDLDLANNQISNLA---P-LSGLTKLTELKLGANQ-ISNI---SPLAGLTALTNLELNENQLEDI--SP-ISNLKN  308 (384)
T ss_dssp             CTTCSEEECCSSCCCCCG---G-GTTCTTCSEEECCSSC-CCCC---GGGTTCTTCSEEECCSSCCSCC--GG-GGGCTT
T ss_pred             ccccchhccccCccCCCC---c-ccccccCCEeeccCcc-cCCC---Cccccccccccccccccccccc--cc-cchhcc
Confidence            456777777665432211   1 2357899999998763 3211   1245677788888877755431  11 235677


Q ss_pred             CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      ++.|+++++ +.+-  .. ...+|+|++|+++++.+++  +.. +..+|+|++|++++|.
T Consensus       309 l~~L~ls~n~l~~l--~~-l~~l~~L~~L~L~~n~l~~--l~~-l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         309 LTYLTLYFNNISDI--SP-VSSLTKLQRLFFANNKVSD--VSS-LANLTNINWLSAGHNQ  362 (384)
T ss_dssp             CSEEECCSSCCSCC--GG-GGGCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSSC
T ss_pred             cCeEECCCCCCCCC--cc-cccCCCCCEEECCCCCCCC--Chh-HcCCCCCCEEECCCCc
Confidence            888888765 3321  11 3477888888888777764  222 4567888888887764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=5.7e-05  Score=57.25  Aligned_cols=88  Identities=18%  Similarity=0.237  Sum_probs=62.7

Q ss_pred             HHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCCh-HHHHHHHHcCCCCCeeEecCC-CC------
Q 021717          114 LTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPP-YLMEEIAQNCRNFRELKIMGP-FD------  185 (308)
Q Consensus       114 l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-~~l~~l~~~~~~L~~L~l~~~-~~------  185 (308)
                      +..+...+++|+.|+|++..-.+-.++...+..+++|+.|+++++.+.+ ..+..+  ...+|+.|.+.++ +.      
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l--~~~~L~~L~L~~Npl~~~~~~~  134 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI--KGLKLEELWLDGNSLSDTFRDQ  134 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHH--TTCCCSSCCCTTSTTSSSSSSH
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhh--hccccceeecCCCCcCcCcccc
Confidence            3445567999999999987433323455667789999999999997764 223333  3467999999885 21      


Q ss_pred             HHHHHHHHhcCCCCcEEE
Q 021717          186 LLFASTLNMYLPKLKVLS  203 (308)
Q Consensus       186 ~~~~~~l~~~~p~L~~L~  203 (308)
                      ......+.+.+|+|+.|+
T Consensus       135 ~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         135 STYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHTTSTTCCEET
T ss_pred             hhHHHHHHHHCCCCCEEC
Confidence            234556677899999985

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.23  E-value=3e-06  Score=66.52  Aligned_cols=110  Identities=13%  Similarity=0.082  Sum_probs=70.7

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCc
Q 021717          122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK  200 (308)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~  200 (308)
                      +++++|+|++. .++...-...+..+++|++|+++++.+.......+ ...++|++|+++++ +..-.. ....++++|+
T Consensus        29 ~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~-~~~~~L~~L~Ls~N~l~~l~~-~~F~~l~~L~  105 (192)
T d1w8aa_          29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-EGASHIQELQLGENKIKEISN-KMFLGLHQLK  105 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSCCCCEECS-SSSTTCTTCC
T ss_pred             CCCCEEEeCCC-CCcccccccccCCCceEeeeecccccccccccccc-ccccccceeeeccccccccCH-HHHhCCCccc
Confidence            47889998876 33221112334678899999999886543222222 24788999999876 221101 1234789999


Q ss_pred             EEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021717          201 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI  235 (308)
Q Consensus       201 ~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i  235 (308)
                      +|+|+++.++.-. ...+...++|++|+|++....
T Consensus       106 ~L~L~~N~l~~i~-~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         106 TLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             EEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccCCccccccC-HHHhcCCcccccccccccccc
Confidence            9999988876311 123456899999999876543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.00  E-value=0.00032  Score=59.99  Aligned_cols=124  Identities=13%  Similarity=0.103  Sum_probs=84.8

Q ss_pred             CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021717           95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN  174 (308)
Q Consensus        95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~  174 (308)
                      ...++.+.+.++....-.    ....+++|+.|++.++. +++.   ..+..+++|++|+++++.+..-  .. ...++.
T Consensus       218 ~~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~-l~~~---~~~~~~~~L~~L~l~~~~l~~~--~~-~~~~~~  286 (384)
T d2omza2         218 LTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQ-ISNL---APLSGLTKLTELKLGANQISNI--SP-LAGLTA  286 (384)
T ss_dssp             CTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSC-CCCC---GGGTTCTTCSEEECCSSCCCCC--GG-GTTCTT
T ss_pred             cCCCCEEECCCCCCCCcc----hhhcccccchhccccCc-cCCC---CcccccccCCEeeccCcccCCC--Cc-cccccc
Confidence            456677777665432211    12467999999999874 4321   1256789999999998865421  11 235788


Q ss_pred             CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      ++.+.+..+ +.+.   .....++++++|+++++.+++-.  . +..+|+|++|++++|. ++
T Consensus       287 l~~l~~~~n~l~~~---~~~~~~~~l~~L~ls~n~l~~l~--~-l~~l~~L~~L~L~~n~-l~  342 (384)
T d2omza2         287 LTNLELNENQLEDI---SPISNLKNLTYLTLYFNNISDIS--P-VSSLTKLQRLFFANNK-VS  342 (384)
T ss_dssp             CSEEECCSSCCSCC---GGGGGCTTCSEEECCSSCCSCCG--G-GGGCTTCCEEECCSSC-CC
T ss_pred             cccccccccccccc---cccchhcccCeEECCCCCCCCCc--c-cccCCCCCEEECCCCC-CC
Confidence            999998876 3321   12458999999999988887532  2 5679999999999994 54

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.65  E-value=0.00013  Score=60.87  Aligned_cols=106  Identities=12%  Similarity=0.048  Sum_probs=67.8

Q ss_pred             hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCC
Q 021717          119 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLP  197 (308)
Q Consensus       119 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p  197 (308)
                      ..+++|+.+++..+.....     ....+++|++|+++++.........+ ..++.++.|.++++ +..-.. ....+++
T Consensus       147 ~~l~~L~~l~l~~n~l~~l-----~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~l~~L~~s~n~l~~~~~-~~~~~l~  219 (305)
T d1xkua_         147 QGMKKLSYIRIADTNITTI-----PQGLPPSLTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNSISAVDN-GSLANTP  219 (305)
T ss_dssp             GGCTTCCEEECCSSCCCSC-----CSSCCTTCSEEECTTSCCCEECTGGG-TTCTTCCEEECCSSCCCEECT-TTGGGST
T ss_pred             ccccccCccccccCCcccc-----CcccCCccCEEECCCCcCCCCChhHh-hcccccccccccccccccccc-ccccccc
Confidence            3467888888887632211     01246788999988875443322222 35788889988776 322111 1234789


Q ss_pred             CCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          198 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       198 ~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      +|+.|+|+++.++.  +..-+..+++|++|+++++.
T Consensus       220 ~L~~L~L~~N~L~~--lp~~l~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         220 HLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNN  253 (305)
T ss_dssp             TCCEEECCSSCCSS--CCTTTTTCSSCCEEECCSSC
T ss_pred             cceeeecccccccc--cccccccccCCCEEECCCCc
Confidence            99999999877762  22234568999999999875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.55  E-value=4.8e-05  Score=59.28  Aligned_cols=87  Identities=10%  Similarity=0.034  Sum_probs=60.5

Q ss_pred             CCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCE
Q 021717          148 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEV  226 (308)
Q Consensus       148 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~  226 (308)
                      +++++|+|+++.++...........++|+.|.++++ +.... ......+++|++|+|+++.++.-. ...+.+.++|++
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~-~~~~~~~~~L~~L~Ls~N~l~~l~-~~~F~~l~~L~~  106 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKEIS-NKMFLGLHQLKT  106 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCTTCCE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccc-ccccccccccceeeeccccccccC-HHHHhCCCcccc
Confidence            589999999997753222222346899999999876 22111 122347899999999998876321 123567999999


Q ss_pred             EecccCCCcC
Q 021717          227 LNISHCLLID  236 (308)
Q Consensus       227 L~l~~C~~i~  236 (308)
                      |+|+++..-+
T Consensus       107 L~L~~N~l~~  116 (192)
T d1w8aa_         107 LNLYDNQISC  116 (192)
T ss_dssp             EECCSSCCCE
T ss_pred             cccCCccccc
Confidence            9999986443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.00023  Score=58.76  Aligned_cols=84  Identities=15%  Similarity=0.103  Sum_probs=37.9

Q ss_pred             hcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCC
Q 021717          145 RMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQN  223 (308)
Q Consensus       145 ~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~  223 (308)
                      ..+++|++|+++++.+..-.-.++ ..+++|+.+.+.++ +..-.. .....+++|++|+++.+.++... ...+..+++
T Consensus       150 ~~~~~L~~L~l~~N~l~~l~~~~f-~~l~~L~~l~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~i~~~~-~~~~~~~~~  226 (284)
T d1ozna_         150 RDLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALP-TEALAPLRA  226 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCC-HHHHTTCTT
T ss_pred             ccccchhhcccccCcccccchhhh-ccccccchhhhhhccccccCh-hHhhhhhhccccccccccccccc-ccccccccc
Confidence            345556666665554331111111 13555666665543 211000 11235566666666655544221 123345666


Q ss_pred             CCEEeccc
Q 021717          224 LEVLNISH  231 (308)
Q Consensus       224 L~~L~l~~  231 (308)
                      |++|++++
T Consensus       227 L~~L~l~~  234 (284)
T d1ozna_         227 LQYLRLND  234 (284)
T ss_dssp             CCEEECCS
T ss_pred             cCEEEecC
Confidence            66666655

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.00017  Score=59.58  Aligned_cols=113  Identities=15%  Similarity=0.011  Sum_probs=75.4

Q ss_pred             hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCC
Q 021717          119 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLP  197 (308)
Q Consensus       119 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p  197 (308)
                      ..+++|+.|++..+.....  .......+++|+.++++++.++.-.-.. ...+++|+.|++.++ +..-.. .....++
T Consensus       102 ~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~l~l~~N~l~~i~~~~-f~~~~~L~~L~l~~N~l~~l~~-~~f~~l~  177 (284)
T d1ozna_         102 HGLGRLHTLHLDRCGLQEL--GPGLFRGLAALQYLYLQDNALQALPDDT-FRDLGNLTHLFLHGNRISSVPE-RAFRGLH  177 (284)
T ss_dssp             TTCTTCCEEECTTSCCCCC--CTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCEECT-TTTTTCT
T ss_pred             cccccCCEEecCCcccccc--cccccchhcccchhhhccccccccChhH-hccccchhhcccccCcccccch-hhhcccc
Confidence            3578999999998743211  1223456789999999998654211112 235789999999886 331111 1234789


Q ss_pred             CCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021717          198 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID  236 (308)
Q Consensus       198 ~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~  236 (308)
                      +|+.|++..+.++... ...+..+++|++|+++++...+
T Consensus       178 ~L~~l~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~i~~  215 (284)
T d1ozna_         178 SLDRLLLHQNRVAHVH-PHAFRDLGRLMTLYLFANNLSA  215 (284)
T ss_dssp             TCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSC
T ss_pred             ccchhhhhhccccccC-hhHhhhhhhccccccccccccc
Confidence            9999999988876322 2335678999999999887554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.00015  Score=59.39  Aligned_cols=38  Identities=34%  Similarity=0.410  Sum_probs=20.4

Q ss_pred             cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      .+++|+.|+++++.++.... ..+..+++|++|+|+++.
T Consensus       146 ~l~~l~~l~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~  183 (266)
T d1p9ag_         146 PTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENS  183 (266)
T ss_dssp             TCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred             ccccchhcccccccccccCc-cccccccccceeecccCC
Confidence            45666666666555542211 123445666666666654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.08  E-value=0.00028  Score=58.74  Aligned_cols=109  Identities=11%  Similarity=0.027  Sum_probs=73.6

Q ss_pred             hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021717          120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK  198 (308)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~  198 (308)
                      ..++|+.|++.++.....  ....+..++.++.|+++++.+.......+ ..+++|++|+++++ ++.- ... ...+++
T Consensus       169 ~~~~L~~L~l~~n~~~~~--~~~~~~~~~~l~~L~~s~n~l~~~~~~~~-~~l~~L~~L~L~~N~L~~l-p~~-l~~l~~  243 (305)
T d1xkua_         169 LPPSLTELHLDGNKITKV--DAASLKGLNNLAKLGLSFNSISAVDNGSL-ANTPHLRELHLNNNKLVKV-PGG-LADHKY  243 (305)
T ss_dssp             CCTTCSEEECTTSCCCEE--CTGGGTTCTTCCEEECCSSCCCEECTTTG-GGSTTCCEEECCSSCCSSC-CTT-TTTCSS
T ss_pred             cCCccCEEECCCCcCCCC--ChhHhhccccccccccccccccccccccc-cccccceeeeccccccccc-ccc-cccccC
Confidence            367899999998643221  12345788999999999986654322222 36899999999987 3310 012 247999


Q ss_pred             CcEEEeeCCCCCHHH---H--HHHHHcCCCCCEEecccCC
Q 021717          199 LKVLSLRCTTLNRDA---L--ILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       199 L~~L~L~~~~it~~~---l--~~l~~~~p~L~~L~l~~C~  233 (308)
                      |++|+|+++.++.-+   +  .......++|+.|+|++..
T Consensus       244 L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         244 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             CCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            999999988876321   1  1122346889999999876

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=95.97  E-value=4.2e-05  Score=64.30  Aligned_cols=133  Identities=13%  Similarity=0.056  Sum_probs=75.0

Q ss_pred             CccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCC
Q 021717           97 SIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFR  176 (308)
Q Consensus        97 ~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~  176 (308)
                      +++.+.+.+........+..-....++|++|+|+++..++.. +...+.++++|++|+++++.+....... ....++|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~-~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccc-cccccccccccchhhhcccccccccccc-ccchhhhc
Confidence            677777765432211111112235788999998865433211 2334678889999999888654322222 23477888


Q ss_pred             eeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCC-CEEecccCC
Q 021717          177 ELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNL-EVLNISHCL  233 (308)
Q Consensus       177 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L-~~L~l~~C~  233 (308)
                      .+.+..+ .... ...-...+++|+.++++++.++.. +...+..++.+ +.++++++.
T Consensus       129 ~l~l~~N~~~~~-~p~~l~~l~~L~~l~l~~n~l~~~-ip~~~~~l~~l~~~l~~~~n~  185 (313)
T d1ogqa_         129 TLDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGA-IPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             EEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEE-CCGGGGCCCTTCCEEECCSSE
T ss_pred             cccccccccccc-CchhhccCcccceeeccccccccc-ccccccccccccccccccccc
Confidence            8888765 1111 001134788899999987766432 11222344444 777776554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.00034  Score=57.19  Aligned_cols=84  Identities=15%  Similarity=0.046  Sum_probs=50.0

Q ss_pred             cCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCC
Q 021717          146 MWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNL  224 (308)
Q Consensus       146 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L  224 (308)
                      .+++|+.|+++++.+..-. .......++|+.|.++++ ++.... .....+++|++|+|+++.++.  +..-+...++|
T Consensus       122 ~l~~l~~L~l~~n~l~~l~-~~~~~~l~~l~~l~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~L~~--lp~~~~~~~~L  197 (266)
T d1p9ag_         122 GLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYT--IPKGFFGSHLL  197 (266)
T ss_dssp             TCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCC--CCTTTTTTCCC
T ss_pred             cccccccccccccccceec-cccccccccchhcccccccccccCc-cccccccccceeecccCCCcc--cChhHCCCCCC
Confidence            4455555555555332110 111224678888888776 322111 123478999999999988762  22223358999


Q ss_pred             CEEecccCC
Q 021717          225 EVLNISHCL  233 (308)
Q Consensus       225 ~~L~l~~C~  233 (308)
                      +.|+|++..
T Consensus       198 ~~L~L~~Np  206 (266)
T d1p9ag_         198 PFAFLHGNP  206 (266)
T ss_dssp             SEEECCSCC
T ss_pred             CEEEecCCC
Confidence            999998743

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=95.79  E-value=2.9e-05  Score=65.32  Aligned_cols=108  Identities=16%  Similarity=0.069  Sum_probs=50.4

Q ss_pred             CCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCC-CCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCc
Q 021717          123 QLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPS-IANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK  200 (308)
Q Consensus       123 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~  200 (308)
                      +++.|+|++........+...+..+++|++|++++ +.+.......++ .+++|++|+++++ +.... ......+++|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~-~L~~L~~L~Ls~N~l~~~~-~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAI-PDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEEC-CGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccc-cccccchhhhccccccccc-cccccchhhhc
Confidence            46666666542221111223455666677776664 222222212233 3566777766654 11100 01123566666


Q ss_pred             EEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          201 VLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       201 ~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      .+++..+.+... +..-+..+++|+.++++++.
T Consensus       129 ~l~l~~N~~~~~-~p~~l~~l~~L~~l~l~~n~  160 (313)
T d1ogqa_         129 TLDFSYNALSGT-LPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             EEECCSSEEESC-CCGGGGGCTTCCEEECCSSC
T ss_pred             cccccccccccc-CchhhccCcccceeeccccc
Confidence            666664432211 11123456666666666654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.00048  Score=51.55  Aligned_cols=85  Identities=15%  Similarity=0.166  Sum_probs=41.4

Q ss_pred             hcCCCCCEEEeCCC-CCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCC
Q 021717          145 RMWRDLESLTMPSI-ANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQ  222 (308)
Q Consensus       145 ~~~~~L~~L~l~~~-~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p  222 (308)
                      ..+++|++|++.++ .+..-...++ ...++|+.|+++++ +..-.. .....+++|++|+|+++.++.-.- .++ ...
T Consensus        28 ~~l~~l~~L~l~~n~~l~~i~~~~f-~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~l~~-~~~-~~~  103 (156)
T d2ifga3          28 PGAENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSFNALESLSW-KTV-QGL  103 (156)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCSSCCSCCCS-TTT-CSC
T ss_pred             cCccccCeeecCCCccccccCchhh-ccccccCcceeeccccCCccc-ccccccccccceeccCCCCcccCh-hhh-ccc
Confidence            34556666666543 2321111111 23566777776654 221100 122467777777777776652110 111 234


Q ss_pred             CCCEEecccCC
Q 021717          223 NLEVLNISHCL  233 (308)
Q Consensus       223 ~L~~L~l~~C~  233 (308)
                      +|+.|+|++..
T Consensus       104 ~l~~L~L~~Np  114 (156)
T d2ifga3         104 SLQELVLSGNP  114 (156)
T ss_dssp             CCCEEECCSSC
T ss_pred             cccccccCCCc
Confidence            67777777643

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.92  E-value=0.0046  Score=45.90  Aligned_cols=86  Identities=14%  Similarity=0.103  Sum_probs=54.1

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCC
Q 021717          121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL  199 (308)
Q Consensus       121 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L  199 (308)
                      .++|++|.+.+...++.-. ...+..+++|+.|+++++.+..-.-.++ ...++|++|+|+++ ++.- ...+. ...+|
T Consensus        30 l~~l~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~f-~~l~~L~~L~Ls~N~l~~l-~~~~~-~~~~l  105 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSGLRFVAPDAF-HFTPRLSRLNLSFNALESL-SWKTV-QGLSL  105 (156)
T ss_dssp             CSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSCCCEECTTGG-GSCSCCCEEECCSSCCSCC-CSTTT-CSCCC
T ss_pred             ccccCeeecCCCccccccC-chhhccccccCcceeeccccCCcccccc-cccccccceeccCCCCccc-Chhhh-ccccc
Confidence            5688888887554343211 1234678999999999997653222222 35789999999886 2210 00112 34579


Q ss_pred             cEEEeeCCCCC
Q 021717          200 KVLSLRCTTLN  210 (308)
Q Consensus       200 ~~L~L~~~~it  210 (308)
                      ++|+|+++.+.
T Consensus       106 ~~L~L~~Np~~  116 (156)
T d2ifga3         106 QELVLSGNPLH  116 (156)
T ss_dssp             CEEECCSSCCC
T ss_pred             cccccCCCccc
Confidence            99999988764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=93.86  E-value=0.012  Score=48.93  Aligned_cols=14  Identities=14%  Similarity=0.214  Sum_probs=7.3

Q ss_pred             cCCCCcEEEeeCCC
Q 021717          195 YLPKLKVLSLRCTT  208 (308)
Q Consensus       195 ~~p~L~~L~L~~~~  208 (308)
                      .+++|++|++.++.
T Consensus       118 ~l~~L~~L~l~~~~  131 (353)
T d1jl5a_         118 NSSFLKIIDVDNNS  131 (353)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             hhccceeecccccc
Confidence            45555555555443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.87  E-value=0.0044  Score=49.15  Aligned_cols=87  Identities=15%  Similarity=0.164  Sum_probs=49.8

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC--CCHHHHHHHHhcCCCC
Q 021717          122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP--FDLLFASTLNMYLPKL  199 (308)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~~~l~~~~p~L  199 (308)
                      +++++|++++. .++.-. ...+.++++|++|+++++.+....-......++++++|.+..+  ...... .....+++|
T Consensus        29 ~~l~~L~Ls~n-~i~~l~-~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~-~~~~~l~~L  105 (242)
T d1xwdc1          29 RNAIELRFVLT-KLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP-EAFQNLPNL  105 (242)
T ss_dssp             SCCSEEEEESC-CCCEEC-TTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECT-TSEECCTTC
T ss_pred             CCCCEEECcCC-cCCccC-hhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccc-ccccccccc
Confidence            47888888875 332100 1234678888999988875432110111124678888877543  211111 123578888


Q ss_pred             cEEEeeCCCCCH
Q 021717          200 KVLSLRCTTLNR  211 (308)
Q Consensus       200 ~~L~L~~~~it~  211 (308)
                      ++|++..+.++.
T Consensus       106 ~~l~l~~~~l~~  117 (242)
T d1xwdc1         106 QYLLISNTGIKH  117 (242)
T ss_dssp             CEEEEESCCCCS
T ss_pred             cccccchhhhcc
Confidence            888888776653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=90.25  E-value=0.073  Score=43.75  Aligned_cols=53  Identities=23%  Similarity=0.224  Sum_probs=36.9

Q ss_pred             CCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCC
Q 021717          172 CRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL  234 (308)
Q Consensus       172 ~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~  234 (308)
                      +|+|++|+++++ +..     +...+++|+.|+|+++.++.     +-..+++|++|++++|..
T Consensus       283 ~~~L~~L~Ls~N~l~~-----lp~~~~~L~~L~L~~N~L~~-----l~~~~~~L~~L~L~~N~L  336 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIE-----LPALPPRLERLIASFNHLAE-----VPELPQNLKQLHVEYNPL  336 (353)
T ss_dssp             CTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCC
T ss_pred             CCCCCEEECCCCccCc-----cccccCCCCEEECCCCcCCc-----cccccCCCCEEECcCCcC
Confidence            578888888876 321     22357889999988887763     123356899999988863

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.76  E-value=0.0025  Score=50.73  Aligned_cols=131  Identities=11%  Similarity=-0.028  Sum_probs=66.7

Q ss_pred             CccEEEccCCCCC--CHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCC-CCChHHHHHHHHcCC
Q 021717           97 SIRTLIFHFNLYV--SDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQNCR  173 (308)
Q Consensus        97 ~l~~l~l~~~~~~--~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~l~~l~~~~~  173 (308)
                      .++.+.+..+...  .+.    ....+++|+.|+++++.....- -...+..++++++|.+..+ .+....... ...++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~----~f~~l~~L~~L~ls~n~~~~~i-~~~~f~~l~~l~~l~~~~~n~l~~~~~~~-~~~l~  103 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVI-EADVFSNLPKLHEIRIEKANNLLYINPEA-FQNLP  103 (242)
T ss_dssp             CCSEEEEESCCCCEECTT----TTTTCTTCCEEEEESCTTCCEE-CSSSEESCTTCCEEEEECCTTCCEECTTS-EECCT
T ss_pred             CCCEEECcCCcCCccChh----Hhhccchhhhhhhcccccccee-ecccccccccccccccccccccccccccc-ccccc
Confidence            5677777654321  111    1245789999999876433210 0112456788899887654 332211111 23578


Q ss_pred             CCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021717          174 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL  233 (308)
Q Consensus       174 ~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~  233 (308)
                      +|+.|.+.++ +...........++.|..+...++.++.-.-..+......++.|++.++.
T Consensus       104 ~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~  164 (242)
T d1xwdc1         104 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG  164 (242)
T ss_dssp             TCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred             cccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccc
Confidence            9999999876 33211111122334444444444444322111122223478888887654