Query 021718
Match_columns 308
No_of_seqs 126 out of 1157
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 05:08:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021718.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021718hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06472 ACD_ScHsp26_like Alpha 99.8 4.9E-21 1.1E-25 151.2 9.9 81 21-101 1-92 (92)
2 COG0071 IbpA Molecular chapero 99.8 3E-20 6.5E-25 158.6 11.4 89 17-106 38-137 (146)
3 cd06471 ACD_LpsHSP_like Group 99.8 6E-20 1.3E-24 144.6 9.5 80 20-101 1-93 (93)
4 PF00011 HSP20: Hsp20/alpha cr 99.8 1.3E-19 2.8E-24 143.7 10.8 91 23-114 1-100 (102)
5 PRK11597 heat shock chaperone 99.8 9.8E-20 2.1E-24 157.1 10.5 89 17-108 30-128 (142)
6 cd06479 ACD_HspB7_like Alpha c 99.8 1.5E-19 3.2E-24 142.4 9.5 78 23-101 2-81 (81)
7 cd06497 ACD_alphaA-crystallin_ 99.8 2.1E-19 4.6E-24 142.1 10.1 78 23-101 4-86 (86)
8 PRK10743 heat shock protein Ib 99.8 1.7E-19 3.7E-24 154.5 10.2 83 20-105 35-127 (137)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.8 4.3E-19 9.3E-24 139.3 10.1 78 23-101 1-83 (83)
10 cd06498 ACD_alphaB-crystallin_ 99.8 5.4E-19 1.2E-23 139.5 10.0 78 24-102 2-84 (84)
11 cd06475 ACD_HspB1_like Alpha c 99.8 6.3E-19 1.4E-23 139.5 9.9 78 22-100 3-85 (86)
12 cd06470 ACD_IbpA-B_like Alpha- 99.8 1.3E-18 2.8E-23 137.7 10.6 79 20-101 1-90 (90)
13 cd06476 ACD_HspB2_like Alpha c 99.8 1.2E-18 2.7E-23 137.4 9.9 77 24-101 2-83 (83)
14 cd06526 metazoan_ACD Alpha-cry 99.8 2.5E-18 5.5E-23 133.7 9.2 73 28-101 6-83 (83)
15 cd06481 ACD_HspB9_like Alpha c 99.7 5.3E-18 1.1E-22 134.5 8.9 75 26-101 4-87 (87)
16 cd06477 ACD_HspB3_Like Alpha c 99.7 1.3E-17 2.8E-22 132.0 9.6 75 25-100 3-82 (83)
17 cd06464 ACD_sHsps-like Alpha-c 99.7 2.4E-17 5.3E-22 125.0 9.5 78 23-101 1-88 (88)
18 cd06482 ACD_HspB10 Alpha cryst 99.7 3.9E-17 8.4E-22 130.4 8.9 74 27-101 6-87 (87)
19 cd06480 ACD_HspB8_like Alpha-c 99.6 1.6E-15 3.5E-20 122.3 9.2 79 21-100 7-90 (91)
20 KOG3591 Alpha crystallins [Pos 99.5 8.9E-14 1.9E-18 123.7 9.8 97 21-119 64-165 (173)
21 cd00298 ACD_sHsps_p23-like Thi 99.5 5.6E-13 1.2E-17 96.6 9.5 77 24-101 1-80 (80)
22 KOG0710 Molecular chaperone (s 99.4 1.2E-13 2.7E-18 124.3 5.7 93 13-105 78-183 (196)
23 cd06469 p23_DYX1C1_like p23_li 99.2 2.2E-10 4.8E-15 86.7 8.9 70 24-103 1-70 (78)
24 cd06463 p23_like Proteins cont 98.8 3E-08 6.4E-13 73.9 9.1 76 24-104 1-76 (84)
25 PF05455 GvpH: GvpH; InterPro 98.6 2.5E-07 5.4E-12 83.2 9.9 79 18-105 90-171 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.6 3.5E-07 7.5E-12 69.8 8.1 76 23-103 1-76 (84)
27 PF04969 CS: CS domain; Inter 98.4 4.4E-06 9.6E-11 61.9 11.3 77 20-101 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.0 7.1E-05 1.5E-09 60.7 10.2 78 20-103 1-78 (108)
29 PF08190 PIH1: pre-RNA process 97.7 0.00014 3.1E-09 68.3 8.5 65 28-100 260-327 (328)
30 cd06489 p23_CS_hSgt1_like p23_ 97.6 0.00042 9E-09 53.7 8.9 76 23-103 1-76 (84)
31 cd06467 p23_NUDC_like p23_like 97.5 0.00072 1.6E-08 51.8 8.5 74 22-103 1-76 (85)
32 cd06468 p23_CacyBP p23_like do 97.3 0.0035 7.5E-08 49.0 9.9 78 21-103 3-84 (92)
33 cd06488 p23_melusin_like p23_l 97.2 0.0036 7.8E-08 49.3 9.5 78 21-103 2-79 (87)
34 cd06493 p23_NUDCD1_like p23_NU 97.2 0.0037 8E-08 48.8 9.2 74 22-103 1-76 (85)
35 cd00237 p23 p23 binds heat sho 96.5 0.032 7E-07 46.2 10.3 77 20-103 2-78 (106)
36 cd06494 p23_NUDCD2_like p23-li 96.4 0.036 7.8E-07 44.9 9.7 76 19-103 5-82 (93)
37 PLN03088 SGT1, suppressor of 96.1 0.028 6E-07 54.7 9.0 79 20-103 157-235 (356)
38 cd06490 p23_NCB5OR p23_like do 95.0 0.33 7.2E-06 38.4 9.7 75 22-103 1-79 (87)
39 KOG1309 Suppressor of G2 allel 95.0 0.074 1.6E-06 48.8 6.7 78 19-101 3-80 (196)
40 cd06492 p23_mNUDC_like p23-lik 93.9 0.57 1.2E-05 37.2 8.9 74 22-103 1-78 (87)
41 cd06495 p23_NUDCD3_like p23-li 91.4 2.5 5.4E-05 34.9 9.7 80 19-103 4-86 (102)
42 PF14913 DPCD: DPCD protein fa 89.1 1.7 3.8E-05 40.1 7.5 76 18-101 85-168 (194)
43 KOG2265 Nuclear distribution p 69.9 23 0.0005 32.5 7.6 83 14-104 13-97 (179)
44 KOG3158 HSP90 co-chaperone p23 65.6 25 0.00054 32.3 6.9 80 17-103 5-84 (180)
45 KOG1667 Zn2+-binding protein M 63.4 31 0.00068 33.8 7.5 83 20-106 215-297 (320)
46 PF15555 DUF4658: Domain of un 57.9 7.2 0.00016 33.8 2.0 21 279-299 74-94 (129)
47 KOG3591 Alpha crystallins [Pos 57.0 16 0.00036 32.9 4.2 44 32-78 118-162 (173)
48 PF09813 Coiled-coil_56: Coile 56.3 6.5 0.00014 33.0 1.4 31 269-301 40-71 (100)
49 COG5091 SGT1 Suppressor of G2 55.2 7.2 0.00016 38.5 1.7 83 17-103 174-256 (368)
50 PF13349 DUF4097: Domain of un 54.6 93 0.002 26.0 8.2 72 22-98 68-147 (166)
51 cd06482 ACD_HspB10 Alpha cryst 53.1 24 0.00051 28.3 4.2 33 70-103 9-41 (87)
52 cd06478 ACD_HspB4-5-6 Alpha-cr 52.4 30 0.00065 27.0 4.6 32 69-101 7-38 (83)
53 PF00011 HSP20: Hsp20/alpha cr 43.9 57 0.0012 25.4 5.0 33 69-102 7-39 (102)
54 PF13807 GNVR: G-rich domain o 43.9 15 0.00032 28.5 1.6 21 275-295 55-75 (82)
55 cd06480 ACD_HspB8_like Alpha-c 42.1 41 0.0009 27.3 4.0 31 29-59 58-89 (91)
56 cd06477 ACD_HspB3_Like Alpha c 41.8 45 0.00099 26.4 4.1 31 30-60 51-82 (83)
57 cd06471 ACD_LpsHSP_like Group 41.0 37 0.0008 26.4 3.5 31 28-59 61-91 (93)
58 cd06479 ACD_HspB7_like Alpha c 39.8 48 0.001 26.1 3.9 31 70-101 9-39 (81)
59 cd06464 ACD_sHsps-like Alpha-c 39.1 46 0.001 24.6 3.6 32 27-59 54-86 (88)
60 cd06526 metazoan_ACD Alpha-cry 38.9 53 0.0011 25.2 4.0 34 69-103 7-40 (83)
61 cd06472 ACD_ScHsp26_like Alpha 37.6 45 0.00097 26.0 3.5 31 27-58 58-89 (92)
62 cd06470 ACD_IbpA-B_like Alpha- 37.6 66 0.0014 25.2 4.5 34 69-103 11-44 (90)
63 PRK10743 heat shock protein Ib 36.5 55 0.0012 28.3 4.2 31 70-101 46-76 (137)
64 PF15168 TRIQK: Triple QxxK/R 36.1 25 0.00055 28.3 1.8 24 278-301 49-72 (79)
65 PF04202 Mfp-3: Foot protein 3 36.0 23 0.0005 27.9 1.5 15 281-295 3-18 (71)
66 PF05552 TM_helix: Conserved T 34.8 43 0.00092 24.1 2.7 21 281-302 17-37 (53)
67 PF04689 S1FA: DNA binding pro 33.5 40 0.00087 26.5 2.5 25 276-300 12-42 (69)
68 KOG4782 Predicted membrane pro 31.8 31 0.00068 29.0 1.8 13 285-297 64-76 (108)
69 PF04972 BON: BON domain; Int 31.1 73 0.0016 22.8 3.5 25 38-63 12-36 (64)
70 TIGR02736 cbb3_Q_epsi cytochro 30.5 60 0.0013 24.7 2.9 24 282-305 5-28 (56)
71 cd06469 p23_DYX1C1_like p23_li 29.7 1.4E+02 0.003 22.0 4.9 40 29-70 36-76 (78)
72 PF14730 DUF4468: Domain of un 29.6 2.1E+02 0.0046 22.5 6.2 65 31-101 1-85 (91)
73 cd06481 ACD_HspB9_like Alpha c 28.8 76 0.0016 25.0 3.5 32 27-59 52-85 (87)
74 COG5615 Predicted integral mem 28.5 30 0.00066 31.1 1.2 27 271-297 130-157 (161)
75 PF07010 Endomucin: Endomucin; 28.3 43 0.00092 32.2 2.3 17 280-296 196-212 (259)
76 TIGR03654 L6_bact ribosomal pr 28.2 2.2E+02 0.0048 25.5 6.7 44 42-100 11-54 (175)
77 PF08308 PEGA: PEGA domain; I 27.7 1.3E+02 0.0027 22.1 4.3 39 22-60 27-66 (71)
78 cd06463 p23_like Proteins cont 27.7 1.4E+02 0.0031 21.4 4.6 42 28-70 40-82 (84)
79 PRK11597 heat shock chaperone 26.9 88 0.0019 27.4 3.8 32 70-102 44-75 (142)
80 PF12992 DUF3876: Domain of un 25.9 1.6E+02 0.0034 24.3 4.9 39 19-58 25-68 (95)
81 TIGR03653 arch_L6P archaeal ri 25.9 3E+02 0.0064 24.8 7.1 45 42-100 7-51 (170)
82 cd06476 ACD_HspB2_like Alpha c 25.6 1.3E+02 0.0028 23.7 4.3 32 69-101 7-38 (83)
83 PRK05518 rpl6p 50S ribosomal p 25.5 2.8E+02 0.006 25.2 6.9 51 36-100 7-57 (180)
84 PF12669 P12: Virus attachment 25.3 55 0.0012 24.5 2.0 6 297-302 18-23 (58)
85 PF05814 DUF843: Baculovirus p 24.8 60 0.0013 26.5 2.2 16 283-298 32-47 (83)
86 TIGR02856 spore_yqfC sporulati 24.7 87 0.0019 25.1 3.2 20 40-60 41-60 (85)
87 PRK05498 rplF 50S ribosomal pr 24.4 2.4E+02 0.0051 25.3 6.2 44 42-100 12-55 (178)
88 cd06497 ACD_alphaA-crystallin_ 24.3 99 0.0021 24.3 3.4 29 31-59 55-84 (86)
89 cd06498 ACD_alphaB-crystallin_ 23.5 1.1E+02 0.0024 24.0 3.5 32 30-61 51-83 (84)
90 cd06467 p23_NUDC_like p23_like 22.7 1.6E+02 0.0035 22.0 4.2 30 71-100 10-39 (85)
91 cd06475 ACD_HspB1_like Alpha c 21.8 1.7E+02 0.0037 23.0 4.3 31 70-101 11-41 (86)
92 PF12037 DUF3523: Domain of un 21.5 78 0.0017 30.9 2.7 33 268-301 226-259 (276)
93 PTZ00027 60S ribosomal protein 21.0 3.1E+02 0.0066 25.1 6.3 54 35-100 6-59 (190)
94 KOG4356 Uncharacterized conser 20.8 22 0.00047 35.2 -1.2 72 23-103 234-309 (310)
95 PF09682 Holin_LLH: Phage holi 20.8 66 0.0014 26.5 1.8 21 284-304 13-33 (108)
96 PRK00753 psbL photosystem II r 20.3 1.1E+02 0.0024 21.7 2.5 17 282-298 19-35 (39)
97 PF11337 DUF3139: Protein of u 20.2 44 0.00095 26.3 0.6 26 273-298 1-26 (85)
No 1
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.85 E-value=4.9e-21 Score=151.24 Aligned_cols=81 Identities=32% Similarity=0.576 Sum_probs=73.6
Q ss_pred ceeeEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecC-----------CceeeEEEEEEECCCCcccCceEEE
Q 021718 21 STEWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLG-----------NNKWSSFSKEFPISSNYDFNEISAK 89 (308)
Q Consensus 21 ~vDI~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~-----------e~~~grF~R~f~LP~nVD~d~IsA~ 89 (308)
.+||+|+++.|+|.++||||++++|.|++.+++.|+|+|++... ++.+++|.|+|.||.+||.+.|+|+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 47999999999999999999999999999974689999997542 2346789999999999999999999
Q ss_pred EeCCEEEEEEeC
Q 021718 90 FEGGKLFIKHPK 101 (308)
Q Consensus 90 feNGVLtItlPK 101 (308)
|.||||+|++||
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 999999999998
No 2
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3e-20 Score=158.56 Aligned_cols=89 Identities=25% Similarity=0.436 Sum_probs=81.5
Q ss_pred cCCCceeeEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecC-----------CceeeEEEEEEECCCCcccCc
Q 021718 17 KFEPSTEWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLG-----------NNKWSSFSKEFPISSNYDFNE 85 (308)
Q Consensus 17 d~eP~vDI~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~-----------e~~~grF~R~f~LP~nVD~d~ 85 (308)
.+.|++||+++++.|+|.++||||+++||.|++++ +.|+|+|++... ++.++.|.|+|.||..||.+.
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~-~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~ 116 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEV 116 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEEC-CEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccc
Confidence 57899999999999999999999999999999999 799999999751 245678999999999999999
Q ss_pred eEEEEeCCEEEEEEeCcCCCC
Q 021718 86 ISAKFEGGKLFIKHPKIITPA 106 (308)
Q Consensus 86 IsA~feNGVLtItlPK~~~p~ 106 (308)
|+|+|.||||+|++||..+..
T Consensus 117 ~~A~~~nGvL~I~lpk~~~~~ 137 (146)
T COG0071 117 IKAKYKNGLLTVTLPKAEPEE 137 (146)
T ss_pred eeeEeeCcEEEEEEecccccc
Confidence 999999999999999987654
No 3
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.82 E-value=6e-20 Score=144.63 Aligned_cols=80 Identities=35% Similarity=0.522 Sum_probs=73.3
Q ss_pred CceeeEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecC-------------CceeeEEEEEEECCCCcccCce
Q 021718 20 PSTEWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLG-------------NNKWSSFSKEFPISSNYDFNEI 86 (308)
Q Consensus 20 P~vDI~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~-------------e~~~grF~R~f~LP~nVD~d~I 86 (308)
|.+||+++++.|+|.++||||++++|+|.+.+ +.|+|+|++... ++.+++|.|.|.|| ++|.+.|
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKD-GYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHC
Confidence 47999999999999999999999999999998 799999998641 23567899999999 7999999
Q ss_pred EEEEeCCEEEEEEeC
Q 021718 87 SAKFEGGKLFIKHPK 101 (308)
Q Consensus 87 sA~feNGVLtItlPK 101 (308)
+|+|.||+|+|++||
T Consensus 79 ~A~~~dGvL~I~lPK 93 (93)
T cd06471 79 KAKYENGVLKITLPK 93 (93)
T ss_pred EEEEECCEEEEEEcC
Confidence 999999999999998
No 4
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.81 E-value=1.3e-19 Score=143.67 Aligned_cols=91 Identities=31% Similarity=0.540 Sum_probs=73.1
Q ss_pred eeEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeec--C-------CceeeEEEEEEECCCCcccCceEEEEeCC
Q 021718 23 EWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPL--G-------NNKWSSFSKEFPISSNYDFNEISAKFEGG 93 (308)
Q Consensus 23 DI~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~--~-------e~~~grF~R~f~LP~nVD~d~IsA~feNG 93 (308)
||.+++++|.|.++||||.+++|+|++.+ +.|+|+|.+.. . ++.++.|.|+|.||.++|.+.|+|.|+||
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~-~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~G 79 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDD-NKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENG 79 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEET-TEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTS
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEec-CccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCC
Confidence 79999999999999999999999999998 69999999982 1 23456799999999999999999999999
Q ss_pred EEEEEEeCcCCCCCccccccc
Q 021718 94 KLFIKHPKIITPADHQQEEKP 114 (308)
Q Consensus 94 VLtItlPK~~~p~~~~qe~~p 114 (308)
+|+|++||.........+.++
T Consensus 80 vL~I~~pk~~~~~~~~~~~I~ 100 (102)
T PF00011_consen 80 VLTITIPKKEEEEDSQPKRIP 100 (102)
T ss_dssp EEEEEEEBSSSCTTSSSCEE-
T ss_pred EEEEEEEccccccCCCCeEEE
Confidence 999999998877654444343
No 5
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.81 E-value=9.8e-20 Score=157.10 Aligned_cols=89 Identities=22% Similarity=0.344 Sum_probs=76.9
Q ss_pred cCCCceeeEE-cCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecC---------CceeeEEEEEEECCCCcccCce
Q 021718 17 KFEPSTEWAR-EDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLG---------NNKWSSFSKEFPISSNYDFNEI 86 (308)
Q Consensus 17 d~eP~vDI~E-tdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~---------e~~~grF~R~f~LP~nVD~d~I 86 (308)
.+.|++||++ ++++|+|.++||||+++||.|++++ +.|+|+|++... ++.+++|.|+|.||.+||.+
T Consensus 30 ~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~-~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~-- 106 (142)
T PRK11597 30 QSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEG-TRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS-- 106 (142)
T ss_pred CCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEEC-CEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--
Confidence 4569999998 5789999999999999999999998 799999997542 34567899999999999998
Q ss_pred EEEEeCCEEEEEEeCcCCCCCc
Q 021718 87 SAKFEGGKLFIKHPKIITPADH 108 (308)
Q Consensus 87 sA~feNGVLtItlPK~~~p~~~ 108 (308)
+|+|+||||+|++||..++...
T Consensus 107 ~A~~~nGVL~I~lPK~~~~~~~ 128 (142)
T PRK11597 107 GATFVNGLLHIDLIRNEPEAIA 128 (142)
T ss_pred cCEEcCCEEEEEEeccCccccC
Confidence 6999999999999997544333
No 6
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.81 E-value=1.5e-19 Score=142.41 Aligned_cols=78 Identities=17% Similarity=0.323 Sum_probs=72.4
Q ss_pred eeEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecC-CceeeEEEEEEECCCCcccCceEEEE-eCCEEEEEEe
Q 021718 23 EWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLG-NNKWSSFSKEFPISSNYDFNEISAKF-EGGKLFIKHP 100 (308)
Q Consensus 23 DI~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~-e~~~grF~R~f~LP~nVD~d~IsA~f-eNGVLtItlP 100 (308)
++.++++.|+|.++||||++++|.|++.+ +.|+|+|++... +..+++|.|+|.||.+||++.|+|+| +||+|+|+++
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~ 80 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKAR 80 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEec
Confidence 68899999999999999999999999998 799999998653 45678999999999999999999998 9999999998
Q ss_pred C
Q 021718 101 K 101 (308)
Q Consensus 101 K 101 (308)
+
T Consensus 81 ~ 81 (81)
T cd06479 81 R 81 (81)
T ss_pred C
Confidence 6
No 7
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.80 E-value=2.1e-19 Score=142.14 Aligned_cols=78 Identities=23% Similarity=0.404 Sum_probs=70.2
Q ss_pred eeEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecC--Ccee--eEEEEEEECCCCcccCceEEEE-eCCEEEE
Q 021718 23 EWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLG--NNKW--SSFSKEFPISSNYDFNEISAKF-EGGKLFI 97 (308)
Q Consensus 23 DI~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~--e~~~--grF~R~f~LP~nVD~d~IsA~f-eNGVLtI 97 (308)
+|.++++.|.|.++||||++++|.|++.+ +.|+|+|++... +..| ..|.|+|.||.+||.++|+|+| +||||+|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I 82 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLD-DYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTF 82 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEE
Confidence 68999999999999999999999999998 799999987542 2223 4599999999999999999999 7999999
Q ss_pred EEeC
Q 021718 98 KHPK 101 (308)
Q Consensus 98 tlPK 101 (308)
++||
T Consensus 83 ~~PK 86 (86)
T cd06497 83 SGPK 86 (86)
T ss_pred EecC
Confidence 9998
No 8
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.80 E-value=1.7e-19 Score=154.47 Aligned_cols=83 Identities=16% Similarity=0.362 Sum_probs=74.0
Q ss_pred CceeeEE-cCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecC---------CceeeEEEEEEECCCCcccCceEEE
Q 021718 20 PSTEWAR-EDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLG---------NNKWSSFSKEFPISSNYDFNEISAK 89 (308)
Q Consensus 20 P~vDI~E-tdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~---------e~~~grF~R~f~LP~nVD~d~IsA~ 89 (308)
|++||.+ ++++|+|.++||||+++||.|++.+ +.|+|+|++... ++.+++|.|+|.||.+||.++ |+
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~-~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~ 111 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQD-NLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--AN 111 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CE
Confidence 8999994 8999999999999999999999998 799999997652 235577999999999999994 99
Q ss_pred EeCCEEEEEEeCcCCC
Q 021718 90 FEGGKLFIKHPKIITP 105 (308)
Q Consensus 90 feNGVLtItlPK~~~p 105 (308)
|+||||+|++||..++
T Consensus 112 ~~dGVL~I~lPK~~~~ 127 (137)
T PRK10743 112 LVNGLLYIDLERVIPE 127 (137)
T ss_pred EeCCEEEEEEeCCCcc
Confidence 9999999999997433
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.79 E-value=4.3e-19 Score=139.27 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=69.3
Q ss_pred eeEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecC--Cc--eeeEEEEEEECCCCcccCceEEEE-eCCEEEE
Q 021718 23 EWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLG--NN--KWSSFSKEFPISSNYDFNEISAKF-EGGKLFI 97 (308)
Q Consensus 23 DI~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~--e~--~~grF~R~f~LP~nVD~d~IsA~f-eNGVLtI 97 (308)
++.++++.|+|.++||||++++|.|++.+ +.|+|+|++... +. .+..|.|+|.||.+||.+.|+|+| +||||+|
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I 79 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLG-DFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTI 79 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEE
Confidence 47789999999999999999999999998 799999987542 22 234599999999999999999999 6999999
Q ss_pred EEeC
Q 021718 98 KHPK 101 (308)
Q Consensus 98 tlPK 101 (308)
++||
T Consensus 80 ~~PK 83 (83)
T cd06478 80 SGPR 83 (83)
T ss_pred EecC
Confidence 9998
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.79 E-value=5.4e-19 Score=139.45 Aligned_cols=78 Identities=21% Similarity=0.286 Sum_probs=69.6
Q ss_pred eEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecC----CceeeEEEEEEECCCCcccCceEEEEe-CCEEEEE
Q 021718 24 WAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLG----NNKWSSFSKEFPISSNYDFNEISAKFE-GGKLFIK 98 (308)
Q Consensus 24 I~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~----e~~~grF~R~f~LP~nVD~d~IsA~fe-NGVLtIt 98 (308)
+..+++.|.|.++||||++++|.|++.+ +.|+|+|++... +..++.|.|+|.||.+||.+.|+|+|+ ||||+|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~ 80 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLG-DFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVC 80 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEE
Confidence 5778999999999999999999999998 799999987542 223455999999999999999999995 9999999
Q ss_pred EeCc
Q 021718 99 HPKI 102 (308)
Q Consensus 99 lPK~ 102 (308)
+||+
T Consensus 81 lPk~ 84 (84)
T cd06498 81 GPRK 84 (84)
T ss_pred EeCC
Confidence 9984
No 11
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.79 E-value=6.3e-19 Score=139.45 Aligned_cols=78 Identities=15% Similarity=0.294 Sum_probs=71.3
Q ss_pred eeeEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecC----CceeeEEEEEEECCCCcccCceEEEEe-CCEEE
Q 021718 22 TEWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLG----NNKWSSFSKEFPISSNYDFNEISAKFE-GGKLF 96 (308)
Q Consensus 22 vDI~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~----e~~~grF~R~f~LP~nVD~d~IsA~fe-NGVLt 96 (308)
.||+++++.|.|.++||||++++|.|++.+ +.|+|+|++... +..+++|.|+|.||.+||.++|+|.|. ||+|+
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~ 81 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKD-GVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILT 81 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEE
Confidence 589999999999999999999999999998 699999998652 234467999999999999999999997 99999
Q ss_pred EEEe
Q 021718 97 IKHP 100 (308)
Q Consensus 97 ItlP 100 (308)
|++|
T Consensus 82 I~lP 85 (86)
T cd06475 82 VEAP 85 (86)
T ss_pred EEec
Confidence 9998
No 12
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.78 E-value=1.3e-18 Score=137.73 Aligned_cols=79 Identities=16% Similarity=0.399 Sum_probs=71.0
Q ss_pred CceeeEEcC-CeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecCC----------ceeeEEEEEEECCCCcccCceEE
Q 021718 20 PSTEWARED-EFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGN----------NKWSSFSKEFPISSNYDFNEISA 88 (308)
Q Consensus 20 P~vDI~Etd-d~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~e----------~~~grF~R~f~LP~nVD~d~IsA 88 (308)
|++||.+++ +.|+|.++||||++++|+|++.+ +.|+|+|++.... +.+++|.|+|.||.+||.+ +|
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A 77 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVEN-NQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GA 77 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--ee
Confidence 789999975 99999999999999999999998 7999999987632 3467799999999999985 89
Q ss_pred EEeCCEEEEEEeC
Q 021718 89 KFEGGKLFIKHPK 101 (308)
Q Consensus 89 ~feNGVLtItlPK 101 (308)
+|+||+|+|+||+
T Consensus 78 ~~~~GvL~I~l~~ 90 (90)
T cd06470 78 ELENGLLTIDLER 90 (90)
T ss_pred EEeCCEEEEEEEC
Confidence 9999999999985
No 13
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.78 E-value=1.2e-18 Score=137.40 Aligned_cols=77 Identities=17% Similarity=0.316 Sum_probs=68.6
Q ss_pred eEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecC----CceeeEEEEEEECCCCcccCceEEEEe-CCEEEEE
Q 021718 24 WAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLG----NNKWSSFSKEFPISSNYDFNEISAKFE-GGKLFIK 98 (308)
Q Consensus 24 I~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~----e~~~grF~R~f~LP~nVD~d~IsA~fe-NGVLtIt 98 (308)
+..+++.|.|.++||||++++|+|++.+ +.|+|+|++... +..++.|.|+|.||.+||.+.|+|+|+ ||+|+|+
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVD-NLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQ 80 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEE
Confidence 4567999999999999999999999998 799999998542 233456999999999999999999996 9999999
Q ss_pred EeC
Q 021718 99 HPK 101 (308)
Q Consensus 99 lPK 101 (308)
+||
T Consensus 81 ~Pr 83 (83)
T cd06476 81 APR 83 (83)
T ss_pred ecC
Confidence 997
No 14
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.76 E-value=2.5e-18 Score=133.65 Aligned_cols=73 Identities=25% Similarity=0.475 Sum_probs=67.3
Q ss_pred CCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecC----CceeeEEEEEEECCCCcccCceEEEEeC-CEEEEEEeC
Q 021718 28 DEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLG----NNKWSSFSKEFPISSNYDFNEISAKFEG-GKLFIKHPK 101 (308)
Q Consensus 28 dd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~----e~~~grF~R~f~LP~nVD~d~IsA~feN-GVLtItlPK 101 (308)
.+.|.|.++||||++++|+|++.+ +.|+|+|++... ...+++|.|+|.||.+||.+.|+|+|.| |+|+|++||
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~-~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSD-NKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEEC-CEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 369999999999999999999998 799999998763 3466789999999999999999999998 999999997
No 15
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.75 E-value=5.3e-18 Score=134.46 Aligned_cols=75 Identities=25% Similarity=0.480 Sum_probs=67.4
Q ss_pred EcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecCC--------ceeeEEEEEEECCCCcccCceEEEE-eCCEEE
Q 021718 26 REDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGN--------NKWSSFSKEFPISSNYDFNEISAKF-EGGKLF 96 (308)
Q Consensus 26 Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~e--------~~~grF~R~f~LP~nVD~d~IsA~f-eNGVLt 96 (308)
+.++.|.|.++||||+++||.|++.+ +.|+|+|++.... +.+++|.|+|.||.+||.+.|+|.| +||||+
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~ 82 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDG-RKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLH 82 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEEC-CEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEE
Confidence 56899999999999999999999998 7999999976421 2347799999999999999999999 899999
Q ss_pred EEEeC
Q 021718 97 IKHPK 101 (308)
Q Consensus 97 ItlPK 101 (308)
|++|+
T Consensus 83 I~~P~ 87 (87)
T cd06481 83 IRAPR 87 (87)
T ss_pred EEcCC
Confidence 99996
No 16
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.73 E-value=1.3e-17 Score=132.03 Aligned_cols=75 Identities=17% Similarity=0.348 Sum_probs=67.2
Q ss_pred EEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecC----CceeeEEEEEEECCCCcccCceEEEE-eCCEEEEEE
Q 021718 25 AREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLG----NNKWSSFSKEFPISSNYDFNEISAKF-EGGKLFIKH 99 (308)
Q Consensus 25 ~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~----e~~~grF~R~f~LP~nVD~d~IsA~f-eNGVLtItl 99 (308)
-++++.|+|.++||||++++|+|++.+ +.|+|+|++... +..+++|.|+|.||.+||.+.|+|+| +||||+|++
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~ 81 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFE-GWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVET 81 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEe
Confidence 468999999999999999999999999 799999998652 23346799999999999999999998 799999998
Q ss_pred e
Q 021718 100 P 100 (308)
Q Consensus 100 P 100 (308)
|
T Consensus 82 ~ 82 (83)
T cd06477 82 K 82 (83)
T ss_pred c
Confidence 6
No 17
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.72 E-value=2.4e-17 Score=125.03 Aligned_cols=78 Identities=36% Similarity=0.582 Sum_probs=71.7
Q ss_pred eeEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecCC----------ceeeEEEEEEECCCCcccCceEEEEeC
Q 021718 23 EWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGN----------NKWSSFSKEFPISSNYDFNEISAKFEG 92 (308)
Q Consensus 23 DI~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~e----------~~~grF~R~f~LP~nVD~d~IsA~feN 92 (308)
+|.++++.|+|.++||||.+++|.|++.+ +.|.|+|++.... ..++.|.|+|.||.++|.+.++|.|.|
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~-~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~ 79 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLEN 79 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeC
Confidence 57899999999999999999999999999 7999999987632 236779999999999999999999999
Q ss_pred CEEEEEEeC
Q 021718 93 GKLFIKHPK 101 (308)
Q Consensus 93 GVLtItlPK 101 (308)
|+|+|++||
T Consensus 80 G~L~I~~pk 88 (88)
T cd06464 80 GVLTITLPK 88 (88)
T ss_pred CEEEEEEcC
Confidence 999999997
No 18
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.71 E-value=3.9e-17 Score=130.44 Aligned_cols=74 Identities=24% Similarity=0.386 Sum_probs=66.8
Q ss_pred cCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecC-------CceeeEEEEEEECCCCcccCceEEEEeCC-EEEEE
Q 021718 27 EDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLG-------NNKWSSFSKEFPISSNYDFNEISAKFEGG-KLFIK 98 (308)
Q Consensus 27 tdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~-------e~~~grF~R~f~LP~nVD~d~IsA~feNG-VLtIt 98 (308)
+++.|+|.++||||++++|+|++.+ +.|+|+|++... ++.+++|.|+|.||.+||.++|+|+|+|| +|+|.
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~-~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~ 84 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKD-GKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIE 84 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEe
Confidence 5789999999999999999999998 799999998642 35678899999999999999999999865 99999
Q ss_pred EeC
Q 021718 99 HPK 101 (308)
Q Consensus 99 lPK 101 (308)
.|.
T Consensus 85 ~~~ 87 (87)
T cd06482 85 TPC 87 (87)
T ss_pred eCC
Confidence 873
No 19
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.62 E-value=1.6e-15 Score=122.30 Aligned_cols=79 Identities=22% Similarity=0.277 Sum_probs=70.4
Q ss_pred ceeeEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecC----CceeeEEEEEEECCCCcccCceEEEEe-CCEE
Q 021718 21 STEWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLG----NNKWSSFSKEFPISSNYDFNEISAKFE-GGKL 95 (308)
Q Consensus 21 ~vDI~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~----e~~~grF~R~f~LP~nVD~d~IsA~fe-NGVL 95 (308)
.--+.++++.|.|.+|+.||+++||.|++.+ +.|+|+|++... +..++.|.|+|.||.+||.+.|+|.|. ||+|
T Consensus 7 ~~~~~~~~~~f~v~ldv~gF~pEDL~Vkv~~-~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL 85 (91)
T cd06480 7 RNPPPNSSEPWKVCVNVHSFKPEELTVKTKD-GFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLL 85 (91)
T ss_pred cCCCCCCCCcEEEEEEeCCCCHHHcEEEEEC-CEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeE
Confidence 3345678999999999999999999999998 799999998763 234567999999999999999999998 9999
Q ss_pred EEEEe
Q 021718 96 FIKHP 100 (308)
Q Consensus 96 tItlP 100 (308)
+|.+|
T Consensus 86 ~IeaP 90 (91)
T cd06480 86 IIEAP 90 (91)
T ss_pred EEEcC
Confidence 99998
No 20
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=8.9e-14 Score=123.68 Aligned_cols=97 Identities=19% Similarity=0.335 Sum_probs=82.2
Q ss_pred ceeeEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecCCc----eeeEEEEEEECCCCcccCceEEEEe-CCEE
Q 021718 21 STEWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGNN----KWSSFSKEFPISSNYDFNEISAKFE-GGKL 95 (308)
Q Consensus 21 ~vDI~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~e~----~~grF~R~f~LP~nVD~d~IsA~fe-NGVL 95 (308)
..++..+++.|.|.+|+..|++++|.|++.+ +.|.|+|++....+ ....|.|+|.||.+||++.|++.|+ ||+|
T Consensus 64 ~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~-~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvL 142 (173)
T KOG3591|consen 64 ASEIVNDKDKFEVNLDVHQFKPEELKVKTDD-NTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVL 142 (173)
T ss_pred ccccccCCCcEEEEEEcccCcccceEEEeCC-CEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceE
Confidence 5678889999999999999999999999999 69999999987633 3345999999999999999999996 9999
Q ss_pred EEEEeCcCCCCCcccccccccccc
Q 021718 96 FIKHPKIITPADHQQEEKPQAQAV 119 (308)
Q Consensus 96 tItlPK~~~p~~~~qe~~pi~~~~ 119 (308)
+|++||...... ..+.+||+...
T Consensus 143 tI~ap~~~~~~~-~er~ipI~~~~ 165 (173)
T KOG3591|consen 143 TIEAPKPPPKQD-NERSIPIEQVG 165 (173)
T ss_pred EEEccCCCCcCc-cceEEeEeecC
Confidence 999999775544 34456666543
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.46 E-value=5.6e-13 Score=96.57 Aligned_cols=77 Identities=32% Similarity=0.585 Sum_probs=70.4
Q ss_pred eEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecC---CceeeEEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 021718 24 WAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLG---NNKWSSFSKEFPISSNYDFNEISAKFEGGKLFIKHP 100 (308)
Q Consensus 24 I~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~---e~~~grF~R~f~LP~nVD~d~IsA~feNGVLtItlP 100 (308)
|.++++.|.|.++|||+.+++|.|.+.+ +.|.|+|.+... ....+.|.+.|.||..+|++.++|.|.+|+|.|++|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~-~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence 6889999999999999999999999998 799999987653 234577999999999999999999999999999999
Q ss_pred C
Q 021718 101 K 101 (308)
Q Consensus 101 K 101 (308)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 7
No 22
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.2e-13 Score=124.27 Aligned_cols=93 Identities=30% Similarity=0.472 Sum_probs=83.0
Q ss_pred cccccCCCceeeEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecC-------------CceeeEEEEEEECCC
Q 021718 13 REYEKFEPSTEWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLG-------------NNKWSSFSKEFPISS 79 (308)
Q Consensus 13 rv~~d~eP~vDI~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~-------------e~~~grF~R~f~LP~ 79 (308)
.....+.+.+++.++++.|++.++|||+.+++|+|++++.++|+|+|++... ++.++.|.|.|.||+
T Consensus 78 ~~~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPe 157 (196)
T KOG0710|consen 78 EAKSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPE 157 (196)
T ss_pred cccccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCc
Confidence 4566678889999999999999999999999999999986689999998763 234456999999999
Q ss_pred CcccCceEEEEeCCEEEEEEeCcCCC
Q 021718 80 NYDFNEISAKFEGGKLFIKHPKIITP 105 (308)
Q Consensus 80 nVD~d~IsA~feNGVLtItlPK~~~p 105 (308)
+++.+.|+|.|.||||+|.+||+.+.
T Consensus 158 nv~~d~ikA~~~nGVL~VvvpK~~~~ 183 (196)
T KOG0710|consen 158 NVDVDEIKAEMENGVLTVVVPKLEPL 183 (196)
T ss_pred cccHHHHHHHhhCCeEEEEEeccccc
Confidence 99999999999999999999998864
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.15 E-value=2.2e-10 Score=86.68 Aligned_cols=70 Identities=20% Similarity=0.300 Sum_probs=65.2
Q ss_pred eEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEeCCEEEEEEeCcC
Q 021718 24 WAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFEGGKLFIKHPKII 103 (308)
Q Consensus 24 I~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~feNGVLtItlPK~~ 103 (308)
|.++++.+.|.++|||+++++|.|.+++ +.|.|+| ..|.+.+.||..||++..++++.+|.|.|+++|..
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~-~~l~i~~---------~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~ 70 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSD-LYLKVNF---------PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKE 70 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEec-CEEEEcC---------CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCC
Confidence 7889999999999999999999999998 6899988 23899999999999999999999999999999965
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.82 E-value=3e-08 Score=73.91 Aligned_cols=76 Identities=21% Similarity=0.170 Sum_probs=67.7
Q ss_pred eEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEeCCEEEEEEeCcC
Q 021718 24 WAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFEGGKLFIKHPKII 103 (308)
Q Consensus 24 I~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~feNGVLtItlPK~~ 103 (308)
|.++++.+.|.+++||..++++.|.+.+ +.|+|++... .-..|...+.|+..||++...+++.+|.|.|+++|..
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~~----~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~ 75 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVKGG----GGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKE 75 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEec-CEEEEEeeCC----CCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECC
Confidence 6789999999999999999999999998 6899998753 1245889999999999999999999999999999966
Q ss_pred C
Q 021718 104 T 104 (308)
Q Consensus 104 ~ 104 (308)
+
T Consensus 76 ~ 76 (84)
T cd06463 76 P 76 (84)
T ss_pred C
Confidence 4
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.61 E-value=2.5e-07 Score=83.22 Aligned_cols=79 Identities=18% Similarity=0.242 Sum_probs=64.5
Q ss_pred CCCceeeEEcCC-eEEEEEEcCCCCCCC-cEEEEE-eCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEeCCE
Q 021718 18 FEPSTEWAREDE-FDTLIVNLPGFRKEQ-LKVQVT-TSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFEGGK 94 (308)
Q Consensus 18 ~eP~vDI~Etdd-~yvI~vdLPGfkkEd-I~V~V~-d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~feNGV 94 (308)
..+.+++.+.++ .++|.++|||++.++ |.|.+. +.+.|+|+.. ++|.+++.||.. +++.++++|.|||
T Consensus 90 ~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~--------~~~~krv~L~~~-~~e~~~~t~nNgI 160 (177)
T PF05455_consen 90 ESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG--------EKYLKRVALPWP-DPEITSATFNNGI 160 (177)
T ss_pred ceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC--------CceEeeEecCCC-ccceeeEEEeCce
Confidence 457789998777 699999999999998 999999 4456777532 237899999976 6899999999999
Q ss_pred EEEEEeCcCCC
Q 021718 95 LFIKHPKIITP 105 (308)
Q Consensus 95 LtItlPK~~~p 105 (308)
|.|++-+...+
T Consensus 161 LEIri~~~~~~ 171 (177)
T PF05455_consen 161 LEIRIRRTEES 171 (177)
T ss_pred EEEEEeecCCC
Confidence 99999885533
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.56 E-value=3.5e-07 Score=69.80 Aligned_cols=76 Identities=20% Similarity=0.212 Sum_probs=67.5
Q ss_pred eeEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEeCCEEEEEEeCc
Q 021718 23 EWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFEGGKLFIKHPKI 102 (308)
Q Consensus 23 DI~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~feNGVLtItlPK~ 102 (308)
||+++++.+.|.+.+||+.++++.|.+.+ +.|.|++... .-..|...+.|...|+++..+.++.+|.|.|+|.|.
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~-~~l~i~~~~~----~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~ 75 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNE-QSLSVSIILP----GGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKA 75 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEec-CEEEEEEECC----CCCeEEEecccccccCchhcEEEEeCeEEEEEEEcC
Confidence 79999999999999999999999999998 6899987642 113488899999999999999999999999999996
Q ss_pred C
Q 021718 103 I 103 (308)
Q Consensus 103 ~ 103 (308)
.
T Consensus 76 ~ 76 (84)
T cd06466 76 E 76 (84)
T ss_pred C
Confidence 5
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.44 E-value=4.4e-06 Score=61.92 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=65.4
Q ss_pred CceeeEEcCCeEEEEEEcCCC--CCCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEeCCEEEE
Q 021718 20 PSTEWAREDEFDTLIVNLPGF--RKEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFEGGKLFI 97 (308)
Q Consensus 20 P~vDI~Etdd~yvI~vdLPGf--kkEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~feNGVLtI 97 (308)
|.++|.++++...|.+.+++. ++++|.|.+.+ ..|.|+.....+ ..|...+.|...|+++....++.++.|.|
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~~~~----~~~~~~~~L~~~I~~~~s~~~~~~~~i~i 75 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIKSGDG----KEYLLEGELFGEIDPDESTWKVKDNKIEI 75 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEEETTS----CEEEEEEEBSS-BECCCEEEEEETTEEEE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEEccCC----ceEEEEEEEeeeEcchhcEEEEECCEEEE
Confidence 789999999999999999665 59999999998 689998653221 56888899999999999999999999999
Q ss_pred EEeC
Q 021718 98 KHPK 101 (308)
Q Consensus 98 tlPK 101 (308)
+|.|
T Consensus 76 ~L~K 79 (79)
T PF04969_consen 76 TLKK 79 (79)
T ss_dssp EEEB
T ss_pred EEEC
Confidence 9987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=97.99 E-value=7.1e-05 Score=60.75 Aligned_cols=78 Identities=17% Similarity=0.262 Sum_probs=67.5
Q ss_pred CceeeEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEeCCEEEEEE
Q 021718 20 PSTEWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFEGGKLFIKH 99 (308)
Q Consensus 20 P~vDI~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~feNGVLtItl 99 (308)
|.++|+++.+...|.+.+||+ +++.|.+.. ..|.|++..... ...|...+.|...|+++..+.++.++.|.|+|
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~-~~l~v~~~~~~~---~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L 74 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEP-TSLSFKAKGGGG---GKKYEFDLEFYKEIDPEESKYKVTGRQIEFVL 74 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEEC-CEEEEEEEcCCC---CeeEEEEeEhhhhccccccEEEecCCeEEEEE
Confidence 789999999999999999998 889999998 689999854211 23377888999999999999999999999999
Q ss_pred eCcC
Q 021718 100 PKII 103 (308)
Q Consensus 100 PK~~ 103 (308)
.|..
T Consensus 75 ~K~~ 78 (108)
T cd06465 75 RKKE 78 (108)
T ss_pred EECC
Confidence 9965
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.70 E-value=0.00014 Score=68.30 Aligned_cols=65 Identities=22% Similarity=0.445 Sum_probs=58.4
Q ss_pred CCeEEEEEEcCCC-CCCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEe--CCEEEEEEe
Q 021718 28 DEFDTLIVNLPGF-RKEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFE--GGKLFIKHP 100 (308)
Q Consensus 28 dd~yvI~vdLPGf-kkEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~fe--NGVLtItlP 100 (308)
.+.++|.|+|||+ +..+|.|.|.+ ..|.|..... .|.-.+.||..||.+..+|.|. .++|+|++|
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~-~~l~l~~~~~-------~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSE-DRLSLSSPKP-------KYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeC-CEEEEEeCCC-------ceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 6889999999999 89999999998 6888886542 5888999999999999999995 699999998
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.65 E-value=0.00042 Score=53.66 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=65.3
Q ss_pred eeEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEeCCEEEEEEeCc
Q 021718 23 EWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFEGGKLFIKHPKI 102 (308)
Q Consensus 23 DI~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~feNGVLtItlPK~ 102 (308)
||+++++...|.+.++|+.++++.|.+.+ +.|.+++.... + ..|.-.+.|...|++++.+.++..+-+.|.|.|.
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~~-~---~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~ 75 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEK-RELSATVKLPS-G---NDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKT 75 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEECCC-C---CcEEEeeecCceecchhcEEEEeCcEEEEEEEcC
Confidence 79999999999999999999999999998 68999876521 1 1377788999999999888888899999999996
Q ss_pred C
Q 021718 103 I 103 (308)
Q Consensus 103 ~ 103 (308)
.
T Consensus 76 ~ 76 (84)
T cd06489 76 E 76 (84)
T ss_pred C
Confidence 4
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.51 E-value=0.00072 Score=51.79 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=61.9
Q ss_pred eeeEEcCCeEEEEEEcC-CCCCCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEeC-CEEEEEE
Q 021718 22 TEWAREDEFDTLIVNLP-GFRKEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFEG-GKLFIKH 99 (308)
Q Consensus 22 vDI~Etdd~yvI~vdLP-GfkkEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~feN-GVLtItl 99 (308)
++|.++++...|.+.+| ++.+++|.|.+.+ ..|.|+... ..+.-...|...||++...-++.+ ..|.|++
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~-------~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L 72 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKG-------GEPLLDGELYAKVKVDESTWTLEDGKLLEITL 72 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECC-------CCceEcCcccCceeEcCCEEEEeCCCEEEEEE
Confidence 57999999999999998 7999999999998 689998642 113334468899999998888888 9999999
Q ss_pred eCcC
Q 021718 100 PKII 103 (308)
Q Consensus 100 PK~~ 103 (308)
+|..
T Consensus 73 ~K~~ 76 (85)
T cd06467 73 EKRN 76 (85)
T ss_pred EECC
Confidence 9965
No 32
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.28 E-value=0.0035 Score=48.99 Aligned_cols=78 Identities=17% Similarity=0.327 Sum_probs=64.5
Q ss_pred ceeeEEcCCeEEEEEEcCCCCC---CCcEEEEEeCceEEEEEEeecCCceeeEEEEEEE-CCCCcccCceEEEEeCCEEE
Q 021718 21 STEWAREDEFDTLIVNLPGFRK---EQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFP-ISSNYDFNEISAKFEGGKLF 96 (308)
Q Consensus 21 ~vDI~Etdd~yvI~vdLPGfkk---EdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~-LP~nVD~d~IsA~feNGVLt 96 (308)
.++|.++++...|.+.+|+... +++.|.+.. +.|.|++... .+ ..|.-.+. |-..|+++..+.++..+-+.
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~~~-~~---~~~~~~~~~L~~~I~~e~s~~~~~~~ki~ 77 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTE-RSFELKVHDL-NG---KNYRFTINRLLKKIDPEKSSFKVKTDRIV 77 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecC-CEEEEEEECC-CC---cEEEEEehHhhCccCccccEEEEeCCEEE
Confidence 4799999999999999999876 999999998 6899987432 11 13555564 88999999998889899999
Q ss_pred EEEeCcC
Q 021718 97 IKHPKII 103 (308)
Q Consensus 97 ItlPK~~ 103 (308)
|++.|..
T Consensus 78 i~L~K~~ 84 (92)
T cd06468 78 ITLAKKK 84 (92)
T ss_pred EEEEeCC
Confidence 9999965
No 33
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.22 E-value=0.0036 Score=49.25 Aligned_cols=78 Identities=15% Similarity=0.083 Sum_probs=65.9
Q ss_pred ceeeEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 021718 21 STEWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFEGGKLFIKHP 100 (308)
Q Consensus 21 ~vDI~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~feNGVLtItlP 100 (308)
.+||+++++..+|.+.+.|+.++++.|.+++ +.|.|+..... ...|...+.|-..|+++..+-+...+-+.|++.
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~~----~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~ 76 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIVFEG----NKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLR 76 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecC-CEEEEEEECCC----CceEEEEeeccceEChhHcEEEecCcEEEEEEE
Confidence 5899999999999999999999999999997 58888754332 123788889999999999777778899999999
Q ss_pred CcC
Q 021718 101 KII 103 (308)
Q Consensus 101 K~~ 103 (308)
|..
T Consensus 77 K~~ 79 (87)
T cd06488 77 KAE 79 (87)
T ss_pred eCC
Confidence 965
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.19 E-value=0.0037 Score=48.83 Aligned_cols=74 Identities=19% Similarity=0.226 Sum_probs=59.0
Q ss_pred eeeEEcCCeEEEEEEcC-CCCCCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEeCC-EEEEEE
Q 021718 22 TEWAREDEFDTLIVNLP-GFRKEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFEGG-KLFIKH 99 (308)
Q Consensus 22 vDI~Etdd~yvI~vdLP-GfkkEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~feNG-VLtItl 99 (308)
++|.++.+...|.+.+| |+.+++|+|++.. +.|.|.... + ..| ....|...|+++.-.=++++| .|.|.+
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~~---~---~~~-~~g~L~~~I~~d~Stw~i~~~~~l~i~L 72 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLP-DHISIALKD---Q---APL-LEGKLYSSIDHESSTWIIKENKSLEVSL 72 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEec-CEEEEEeCC---C---CeE-EeCcccCcccccCcEEEEeCCCEEEEEE
Confidence 58999999999999996 9999999999998 588886521 1 112 344788999999976666666 799999
Q ss_pred eCcC
Q 021718 100 PKII 103 (308)
Q Consensus 100 PK~~ 103 (308)
.|..
T Consensus 73 ~K~~ 76 (85)
T cd06493 73 IKKD 76 (85)
T ss_pred EECC
Confidence 9964
No 35
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=96.55 E-value=0.032 Score=46.15 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=62.4
Q ss_pred CceeeEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEeCCEEEEEE
Q 021718 20 PSTEWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFEGGKLFIKH 99 (308)
Q Consensus 20 P~vDI~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~feNGVLtItl 99 (308)
|.++|.++.+...|+|++|+ .++++|.+++ +.|.++|... .+. .|.-.+.|=..|+++.-+-+...--+.|.+
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~-~~l~f~~~~~-~g~---~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L 74 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEK-SKLTFSCLNG-DNV---KIYNEIELYDRVDPNDSKHKRTDRSILCCL 74 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEec-CEEEEEEECC-CCc---EEEEEEEeecccCcccCeEEeCCceEEEEE
Confidence 78999999999999999999 5899999998 6899998432 221 266677888889999877676677788888
Q ss_pred eCcC
Q 021718 100 PKII 103 (308)
Q Consensus 100 PK~~ 103 (308)
.|..
T Consensus 75 ~K~~ 78 (106)
T cd00237 75 RKGK 78 (106)
T ss_pred EeCC
Confidence 8864
No 36
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.43 E-value=0.036 Score=44.92 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=60.5
Q ss_pred CCceeeEEcCCeEEEEEEcC-CCCCCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEeCCE-EE
Q 021718 19 EPSTEWAREDEFDTLIVNLP-GFRKEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFEGGK-LF 96 (308)
Q Consensus 19 eP~vDI~Etdd~yvI~vdLP-GfkkEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~feNGV-Lt 96 (308)
.+.++|.++.+...|.+.|| |.++.||.|.+.. +.|.|.-. +.. -+. =.|...|+++.-.=++++|- |.
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~-~~l~V~~~----g~~--~l~--G~L~~~I~~destWtled~k~l~ 75 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGS-RDISLAVK----GQE--VLK--GKLFDSVVADECTWTLEDRKLIR 75 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEc-CEEEEEEC----CEE--EEc--CcccCccCcccCEEEEECCcEEE
Confidence 46799999999999999999 9999999999998 58888741 111 111 16788899998777788765 89
Q ss_pred EEEeCcC
Q 021718 97 IKHPKII 103 (308)
Q Consensus 97 ItlPK~~ 103 (308)
|.|.|..
T Consensus 76 I~L~K~~ 82 (93)
T cd06494 76 IVLTKSN 82 (93)
T ss_pred EEEEeCC
Confidence 9999964
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.15 E-value=0.028 Score=54.66 Aligned_cols=79 Identities=14% Similarity=0.086 Sum_probs=66.0
Q ss_pred CceeeEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEeCCEEEEEE
Q 021718 20 PSTEWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFEGGKLFIKH 99 (308)
Q Consensus 20 P~vDI~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~feNGVLtItl 99 (308)
+.+||+++++..+|.|.+.|+.++++.|.+.+ +.|.|+-.... + ..|...+.|-..|+++..+-++...-+.|+|
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~-~~l~v~~~~~~-~---~~y~~~~~L~~~I~p~~s~~~v~~~Kiei~l 231 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFGE-QILSVVIEVPG-E---DAYHLQPRLFGKIIPDKCKYEVLSTKIEIRL 231 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEeec-CEEEEEEecCC-C---cceeecccccccccccccEEEEecceEEEEE
Confidence 56899999999999999999999999999998 68888864322 1 2255568899999999988888777889999
Q ss_pred eCcC
Q 021718 100 PKII 103 (308)
Q Consensus 100 PK~~ 103 (308)
.|..
T Consensus 232 ~K~~ 235 (356)
T PLN03088 232 AKAE 235 (356)
T ss_pred ecCC
Confidence 9864
No 38
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=94.98 E-value=0.33 Score=38.37 Aligned_cols=75 Identities=15% Similarity=0.197 Sum_probs=54.6
Q ss_pred eeeEEcCCeEEEEEEcCCCCCCC--cEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEe--CCEEEE
Q 021718 22 TEWAREDEFDTLIVNLPGFRKEQ--LKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFE--GGKLFI 97 (308)
Q Consensus 22 vDI~Etdd~yvI~vdLPGfkkEd--I~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~fe--NGVLtI 97 (308)
+||+++++..+|.+...+....+ +.+.... +.|.|+-... + ..|...|.|-..|+.+. +.++. -|-+.|
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~~~--~---~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI 73 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEIILG--D---KSYLLHLDLSNEVQWPC-EVRISTETGKIEL 73 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEECC--C---ceEEEeeeccccCCCCc-EEEEcccCceEEE
Confidence 59999999999999999654444 4455454 4788874322 1 22777788888998775 55554 789999
Q ss_pred EEeCcC
Q 021718 98 KHPKII 103 (308)
Q Consensus 98 tlPK~~ 103 (308)
+|.|..
T Consensus 74 ~L~K~e 79 (87)
T cd06490 74 VLKKKE 79 (87)
T ss_pred EEEcCC
Confidence 999955
No 39
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=94.97 E-value=0.074 Score=48.77 Aligned_cols=78 Identities=14% Similarity=0.196 Sum_probs=62.2
Q ss_pred CCceeeEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEeCCEEEEE
Q 021718 19 EPSTEWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFEGGKLFIK 98 (308)
Q Consensus 19 eP~vDI~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~feNGVLtIt 98 (308)
.+.+||+++....+|.|..+++.++|+.|.+.. +.|.|.-+-+. +. .|.-...|-..|.++..+-..----+.|+
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~~~-g~---~~~l~~~L~~~I~pe~~s~k~~stKVEI~ 77 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQLPS-GS---EYNLQLKLYHEIIPEKSSFKVFSTKVEIT 77 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEecCC-ch---hhhhhHHhcccccccceeeEeeeeeEEEE
Confidence 467999999999999999999999999999997 68888765432 21 25555558888888886655556788999
Q ss_pred EeC
Q 021718 99 HPK 101 (308)
Q Consensus 99 lPK 101 (308)
++|
T Consensus 78 L~K 80 (196)
T KOG1309|consen 78 LAK 80 (196)
T ss_pred ecc
Confidence 999
No 40
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=93.94 E-value=0.57 Score=37.24 Aligned_cols=74 Identities=15% Similarity=0.176 Sum_probs=56.2
Q ss_pred eeeEEcCCeEEEEEEcC-C--CCCCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEeCC-EEEE
Q 021718 22 TEWAREDEFDTLIVNLP-G--FRKEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFEGG-KLFI 97 (308)
Q Consensus 22 vDI~Etdd~yvI~vdLP-G--fkkEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~feNG-VLtI 97 (308)
|.|.++.+...|++.|| | +++.+|.|.+.. ..|.|.-.. . ...-.=.|...|+.+.-.=.+++| .|.|
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~-~~l~v~~~g----~---~~~i~G~L~~~V~~des~Wtled~~~l~i 72 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQR-KHLKVGLKG----Q---PPIIDGELYNEVKVEESSWLIEDGKVVTV 72 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEec-CEEEEEECC----C---ceEEeCcccCcccccccEEEEeCCCEEEE
Confidence 46889999999999997 4 899999999998 588875321 1 112223677888888877778886 8999
Q ss_pred EEeCcC
Q 021718 98 KHPKII 103 (308)
Q Consensus 98 tlPK~~ 103 (308)
.+-|..
T Consensus 73 ~L~K~~ 78 (87)
T cd06492 73 NLEKIN 78 (87)
T ss_pred EEEECC
Confidence 999965
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=91.42 E-value=2.5 Score=34.93 Aligned_cols=80 Identities=14% Similarity=0.224 Sum_probs=58.4
Q ss_pred CCceeeEEcCCeEEEEEEcC-C-CCCCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEeCC-EE
Q 021718 19 EPSTEWAREDEFDTLIVNLP-G-FRKEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFEGG-KL 95 (308)
Q Consensus 19 eP~vDI~Etdd~yvI~vdLP-G-fkkEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~feNG-VL 95 (308)
...|.|.++-+...|++.|| | .+..+|.|.+.. ..|.|.-.....+..+ +.. .|...|+.+.-.=.++|| .|
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~~~~~~~~--i~G--~L~~~V~~des~Wtled~~~l 78 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRDGGGEKVL--MEG--EFTHKINTENSLWSLEPGKCV 78 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEc-CEEEEEEecCCCCceE--EeC--cccCcccCccceEEEeCCCEE
Confidence 45789999999999999999 6 468999999998 5788764310011010 122 577888888877777885 58
Q ss_pred EEEEeCcC
Q 021718 96 FIKHPKII 103 (308)
Q Consensus 96 tItlPK~~ 103 (308)
.|.+-|..
T Consensus 79 ~I~L~K~~ 86 (102)
T cd06495 79 LLSLSKCS 86 (102)
T ss_pred EEEEEECC
Confidence 99999963
No 42
>PF14913 DPCD: DPCD protein family
Probab=89.07 E-value=1.7 Score=40.12 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=60.6
Q ss_pred CCCceeeEEcCCeEEEEE-EcCCCCCCCcEEEEE-eCceEEEEEEeecCCceeeEEEEEEECCC--C----cccCceEEE
Q 021718 18 FEPSTEWAREDEFDTLIV-NLPGFRKEQLKVQVT-TSKKMRISGERPLGNNKWSSFSKEFPISS--N----YDFNEISAK 89 (308)
Q Consensus 18 ~eP~vDI~Etdd~yvI~v-dLPGfkkEdI~V~V~-d~~~L~IsGer~~~e~~~grF~R~f~LP~--n----VD~d~IsA~ 89 (308)
-.|.+-=.++..+|+..| +|| +..+-.+|+++ +++.|+|+-..+ .|+++|.+|+ . .+.+.++-.
T Consensus 85 ~nP~~~r~dTk~~fqWRIRNLP-YP~dvYsVtvd~~~r~ivvRTtNK-------KYyKk~~IPDl~R~~l~l~~~~ls~~ 156 (194)
T PF14913_consen 85 SNPIFVRRDTKTSFQWRIRNLP-YPKDVYSVTVDEDERCIVVRTTNK-------KYYKKFSIPDLDRCGLPLEQSALSFA 156 (194)
T ss_pred CCCEEEEEcCccceEEEEccCC-CCccceEEEEcCCCcEEEEECcCc-------cceeEecCCcHHhhCCCcchhhceee
Confidence 357777788999999999 777 67888899999 445788886543 3999999994 2 377778877
Q ss_pred EeCCEEEEEEeC
Q 021718 90 FEGGKLFIKHPK 101 (308)
Q Consensus 90 feNGVLtItlPK 101 (308)
+.|..|.|+..|
T Consensus 157 h~nNTLIIsYkK 168 (194)
T PF14913_consen 157 HQNNTLIISYKK 168 (194)
T ss_pred eecCeEEEEecC
Confidence 889999999877
No 43
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=69.88 E-value=23 Score=32.55 Aligned_cols=83 Identities=14% Similarity=0.193 Sum_probs=60.3
Q ss_pred ccccCCCceeeEEcCCeEEEEEEcC-CC-CCCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEe
Q 021718 14 EYEKFEPSTEWAREDEFDTLIVNLP-GF-RKEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFE 91 (308)
Q Consensus 14 v~~d~eP~vDI~Etdd~yvI~vdLP-Gf-kkEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~fe 91 (308)
....-++.+.|.++=....|.|.|| |+ +..+|.|.+.. +.|.|.-.... -.-.=.|...|+++...=.++
T Consensus 13 ~ng~~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~-~hI~V~~kg~~-------~ildG~L~~~vk~des~WtiE 84 (179)
T KOG2265|consen 13 GNGADEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQS-KHIKVGLKGQP-------PILDGELSHSVKVDESTWTIE 84 (179)
T ss_pred cCCccccceeeeeehhheEEEeecCCCCcccceEEEEeee-eEEEEecCCCC-------ceecCccccccccccceEEec
Confidence 3344568899999999999999888 88 99999999998 67777632211 122224667788888777788
Q ss_pred CCEEEEEEeCcCC
Q 021718 92 GGKLFIKHPKIIT 104 (308)
Q Consensus 92 NGVLtItlPK~~~ 104 (308)
||.+.|.+=+...
T Consensus 85 d~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 85 DGKMIVILLKKSN 97 (179)
T ss_pred CCEEEEEEeeccc
Confidence 9887777666443
No 44
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=65.64 E-value=25 Score=32.33 Aligned_cols=80 Identities=14% Similarity=0.189 Sum_probs=61.5
Q ss_pred cCCCceeeEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEeCCEEE
Q 021718 17 KFEPSTEWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFEGGKLF 96 (308)
Q Consensus 17 d~eP~vDI~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~feNGVLt 96 (308)
...|.+-|.+..+.+.|++.|+. ..+.+|.++. .+|+++|.... .-..|...|.|=..||+++.+-+-. +-+.
T Consensus 5 ~~~p~v~Waqr~~~vyltv~Ved--~~d~~v~~e~-~~l~fs~k~~~---d~~~~~~~ief~~eIdpe~sk~k~~-~r~i 77 (180)
T KOG3158|consen 5 MQPPEVKWAQRRDLVYLTVCVED--AKDVHVNLEP-SKLTFSCKSGA---DNHKYENEIEFFDEIDPEKSKHKRT-SRSI 77 (180)
T ss_pred ccCCcchhhhhcCeEEEEEEecc--Cccceeeccc-cEEEEEeccCC---CceeeEEeeehhhhcCHhhcccccc-ceEE
Confidence 35688999999999999999986 4566778887 58999997642 2244777788889999999877776 6666
Q ss_pred EEEeCcC
Q 021718 97 IKHPKII 103 (308)
Q Consensus 97 ItlPK~~ 103 (308)
.++++..
T Consensus 78 f~i~~K~ 84 (180)
T KOG3158|consen 78 FCILRKK 84 (180)
T ss_pred EEEEEcc
Confidence 6666644
No 45
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=63.36 E-value=31 Score=33.76 Aligned_cols=83 Identities=19% Similarity=0.240 Sum_probs=67.9
Q ss_pred CceeeEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEeCCEEEEEE
Q 021718 20 PSTEWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFEGGKLFIKH 99 (308)
Q Consensus 20 P~vDI~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~feNGVLtItl 99 (308)
-..||.+++...+|.|+.-|.-++.-.|..+. ..|.|+=....++ .+|...+.|=.-|+++.-++.+-.--..|+|
T Consensus 215 cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~-~~l~V~ivf~~gn---a~fd~d~kLwgvvnve~s~v~m~~tkVEIsl 290 (320)
T KOG1667|consen 215 CRHDWHQTNGFVTINVYAKGALPETSNIEANG-TTLHVSIVFGFGN---ASFDLDYKLWGVVNVEESSVVMGETKVEISL 290 (320)
T ss_pred chhhhhhcCCeEEEEEEeccCCcccceeeeCC-eEEEEEEEecCCC---ceeeccceeeeeechhhceEEeecceEEEEE
Confidence 45799999999999999999999999999887 5788875443322 3477777787789999999999999999999
Q ss_pred eCcCCCC
Q 021718 100 PKIITPA 106 (308)
Q Consensus 100 PK~~~p~ 106 (308)
+|..+-.
T Consensus 291 ~k~ep~s 297 (320)
T KOG1667|consen 291 KKAEPGS 297 (320)
T ss_pred eccCCCC
Confidence 9977543
No 46
>PF15555 DUF4658: Domain of unknown function (DUF4658)
Probab=57.87 E-value=7.2 Score=33.81 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=16.8
Q ss_pred eehhHHHHHHHHHHHHHHhhh
Q 021718 279 IMNFTVAILLVLVVYIYAKNA 299 (308)
Q Consensus 279 ~~~~~~~~llvlvlg~y~~~~ 299 (308)
+.-|.|.|||+|+||||-+-|
T Consensus 74 lL~L~~CiLL~vaLglyCgra 94 (129)
T PF15555_consen 74 LLRLCVCILLGVALGLYCGRA 94 (129)
T ss_pred hHHHHHHHHHHHHHHHHccCc
Confidence 345778899999999997654
No 47
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=56.96 E-value=16 Score=32.85 Aligned_cols=44 Identities=14% Similarity=0.259 Sum_probs=33.3
Q ss_pred EEEEEcC-CCCCCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECC
Q 021718 32 TLIVNLP-GFRKEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPIS 78 (308)
Q Consensus 32 vI~vdLP-GfkkEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP 78 (308)
+=..-|| ||.++.|.=++..+|.|+|++........ +.|.|+|.
T Consensus 118 ~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~~~---~er~ipI~ 162 (173)
T KOG3591|consen 118 VRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPKQD---NERSIPIE 162 (173)
T ss_pred EEEecCCCCCChhheEEeeCCCceEEEEccCCCCcCc---cceEEeEe
Confidence 3356799 99999999999988999999987653211 56666654
No 48
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=56.31 E-value=6.5 Score=32.98 Aligned_cols=31 Identities=29% Similarity=0.259 Sum_probs=19.7
Q ss_pred hhhhhcCCceeehhHHH-HHHHHHHHHHHhhhhh
Q 021718 269 WVMELKQPRKIMNFTVA-ILLVLVVYIYAKNAIG 301 (308)
Q Consensus 269 lv~~~kk~rk~~~~~~~-~llvlvlg~y~~~~i~ 301 (308)
|=+.+++- ..-|++++ +|+.+|+|+|+ +.|.
T Consensus 40 ~kr~~~~~-R~rN~~Tgl~L~~~v~gIY~-YTi~ 71 (100)
T PF09813_consen 40 LKRKLQRR-RRRNLLTGLALGAFVVGIYA-YTIY 71 (100)
T ss_pred HHHHHHHH-hhhhHHHHHHHHHHHHHHHh-heee
Confidence 33344443 45576666 88999999996 3443
No 49
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=55.20 E-value=7.2 Score=38.53 Aligned_cols=83 Identities=13% Similarity=0.123 Sum_probs=62.8
Q ss_pred cCCCceeeEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEeCCEEE
Q 021718 17 KFEPSTEWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFEGGKLF 96 (308)
Q Consensus 17 d~eP~vDI~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~feNGVLt 96 (308)
.++=.+||.++.....|-+.-|-+..++|++-++. |.|.|+-+-.. .+.| |.-.+.|-..|+++..+-+.---++.
T Consensus 174 ~~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~-NTL~I~~q~~~-~~~~--~~~~~~Ly~ev~P~~~s~k~fsK~~e 249 (368)
T COG5091 174 KMEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEG-NTLSISYQPRR-LRLW--NDITISLYKEVYPDIRSIKSFSKRVE 249 (368)
T ss_pred cceeeeeccccceeEEEEEecCCCCccccceeecC-Ccceeeeeccc-cchH--HHhhhhhhhhcCcchhhhhhcchhhe
Confidence 34445788889999999999999999999999998 79999976532 1112 55667777889998876555457777
Q ss_pred EEEeCcC
Q 021718 97 IKHPKII 103 (308)
Q Consensus 97 ItlPK~~ 103 (308)
|.+.|+.
T Consensus 250 ~~l~KV~ 256 (368)
T COG5091 250 VHLRKVE 256 (368)
T ss_pred ehhhhhh
Confidence 8877754
No 50
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=54.59 E-value=93 Score=25.97 Aligned_cols=72 Identities=15% Similarity=0.277 Sum_probs=46.7
Q ss_pred eeeEEcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEEeecC--Ccee------eEEEEEEECCCCcccCceEEEEeCC
Q 021718 22 TEWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLG--NNKW------SSFSKEFPISSNYDFNEISAKFEGG 93 (308)
Q Consensus 22 vDI~Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGer~~~--e~~~------grF~R~f~LP~nVD~d~IsA~feNG 93 (308)
+.|...++ +.+++.. ..+.+.++.++ +.|.|....... ...| ....-.+.||.++..++|+....+|
T Consensus 68 V~I~~~~~-~~i~v~~---~~k~~~~~~~~-~~L~I~~~~~~~~~~~~~~~~~~~~~~~i~I~lP~~~~l~~i~i~~~~G 142 (166)
T PF13349_consen 68 VEIKPSDD-DKIKVEY---NGKKPEISVEG-GTLTIKSKDRESFFFKGFNFNNSDNKSKITIYLPKDYKLDKIDIKTSSG 142 (166)
T ss_pred EEEEEcCC-ccEEEEE---cCcEEEEEEcC-CEEEEEEecccccccceEEEcccCCCcEEEEEECCCCceeEEEEEeccc
Confidence 45555433 4445555 21257787877 799998872211 1111 2245678899999889999999999
Q ss_pred EEEEE
Q 021718 94 KLFIK 98 (308)
Q Consensus 94 VLtIt 98 (308)
-+.|.
T Consensus 143 ~i~i~ 147 (166)
T PF13349_consen 143 DITIE 147 (166)
T ss_pred cEEEE
Confidence 88775
No 51
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=53.14 E-value=24 Score=28.33 Aligned_cols=33 Identities=9% Similarity=0.260 Sum_probs=29.1
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEeCcC
Q 021718 70 SFSKEFPISSNYDFNEISAKFEGGKLFIKHPKII 103 (308)
Q Consensus 70 rF~R~f~LP~nVD~d~IsA~feNGVLtItlPK~~ 103 (308)
.|.-.+.|| .++.++|+-++.||.|+|+.-+..
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~ 41 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDGKVQVSAEREN 41 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 488888999 789999999999999999998744
No 52
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=52.44 E-value=30 Score=26.99 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=28.3
Q ss_pred eEEEEEEECCCCcccCceEEEEeCCEEEEEEeC
Q 021718 69 SSFSKEFPISSNYDFNEISAKFEGGKLFIKHPK 101 (308)
Q Consensus 69 grF~R~f~LP~nVD~d~IsA~feNGVLtItlPK 101 (308)
..|.-.+.|| .+++++|+-.+.+|.|+|+.-+
T Consensus 7 ~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~ 38 (83)
T cd06478 7 DRFSVNLDVK-HFSPEELSVKVLGDFVEIHGKH 38 (83)
T ss_pred ceEEEEEECC-CCCHHHeEEEEECCEEEEEEEE
Confidence 3588899998 8899999999999999999854
No 53
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=43.93 E-value=57 Score=25.44 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=27.6
Q ss_pred eEEEEEEECCCCcccCceEEEEeCCEEEEEEeCc
Q 021718 69 SSFSKEFPISSNYDFNEISAKFEGGKLFIKHPKI 102 (308)
Q Consensus 69 grF~R~f~LP~nVD~d~IsA~feNGVLtItlPK~ 102 (308)
.+|.-.+.|| +++.++|+-.+.++.|.|+.-+.
T Consensus 7 ~~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 7 DEYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp SEEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred CEEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 4588899999 78999999999999999998876
No 54
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=43.89 E-value=15 Score=28.48 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=17.0
Q ss_pred CCceeehhHHHHHHHHHHHHH
Q 021718 275 QPRKIMNFTVAILLVLVVYIY 295 (308)
Q Consensus 275 k~rk~~~~~~~~llvlvlg~y 295 (308)
+|++.++++++++|-|+||+-
T Consensus 55 ~P~~~lil~l~~~~Gl~lgi~ 75 (82)
T PF13807_consen 55 SPKRALILALGLFLGLILGIG 75 (82)
T ss_pred CCcHHHHHHHHHHHHHHHHHH
Confidence 799999999997777777753
No 55
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=42.11 E-value=41 Score=27.28 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=27.5
Q ss_pred CeEEEEEEcC-CCCCCCcEEEEEeCceEEEEE
Q 021718 29 EFDTLIVNLP-GFRKEQLKVQVTTSKKMRISG 59 (308)
Q Consensus 29 d~yvI~vdLP-GfkkEdI~V~V~d~~~L~IsG 59 (308)
..|.=.+.|| ++..+.|+-.+..+|.|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 5678889999 899999999999559999986
No 56
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=41.77 E-value=45 Score=26.42 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=26.9
Q ss_pred eEEEEEEcC-CCCCCCcEEEEEeCceEEEEEE
Q 021718 30 FDTLIVNLP-GFRKEQLKVQVTTSKKMRISGE 60 (308)
Q Consensus 30 ~yvI~vdLP-GfkkEdI~V~V~d~~~L~IsGe 60 (308)
.|.=.+.|| ++..+.|+-.+..+|.|+|.|.
T Consensus 51 ~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~~ 82 (83)
T cd06477 51 SFTRQYQLPDGVEHKDLSAMLCHDGILVVETK 82 (83)
T ss_pred EEEEEEECCCCcchheEEEEEcCCCEEEEEec
Confidence 788899999 8999999999853389999974
No 57
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=41.02 E-value=37 Score=26.38 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=26.3
Q ss_pred CCeEEEEEEcCCCCCCCcEEEEEeCceEEEEE
Q 021718 28 DEFDTLIVNLPGFRKEQLKVQVTTSKKMRISG 59 (308)
Q Consensus 28 dd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsG 59 (308)
-..|.-.+.||.+..+.|+-++.+ |.|+|+-
T Consensus 61 ~g~f~r~~~lp~v~~~~i~A~~~d-GvL~I~l 91 (93)
T cd06471 61 YGSFSRSFYLPNVDEEEIKAKYEN-GVLKITL 91 (93)
T ss_pred ccEEEEEEECCCCCHHHCEEEEEC-CEEEEEE
Confidence 456777789999999999999988 8999973
No 58
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=39.76 E-value=48 Score=26.13 Aligned_cols=31 Identities=10% Similarity=0.249 Sum_probs=27.8
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEeC
Q 021718 70 SFSKEFPISSNYDFNEISAKFEGGKLFIKHPK 101 (308)
Q Consensus 70 rF~R~f~LP~nVD~d~IsA~feNGVLtItlPK 101 (308)
.|.-.+.|| .+++++|+-++.+|.|+|+.-+
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger 39 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEK 39 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEE
Confidence 488889999 7899999999999999999765
No 59
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=39.06 E-value=46 Score=24.57 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=28.5
Q ss_pred cCCeEEEEEEcC-CCCCCCcEEEEEeCceEEEEE
Q 021718 27 EDEFDTLIVNLP-GFRKEQLKVQVTTSKKMRISG 59 (308)
Q Consensus 27 tdd~yvI~vdLP-GfkkEdI~V~V~d~~~L~IsG 59 (308)
....|.-.+.|| ++..+.++..+.+ |.|+|.-
T Consensus 54 ~~~~f~r~~~LP~~vd~~~i~a~~~~-G~L~I~~ 86 (88)
T cd06464 54 SYGSFSRSFRLPEDVDPDKIKASLEN-GVLTITL 86 (88)
T ss_pred eCcEEEEEEECCCCcCHHHcEEEEeC-CEEEEEE
Confidence 468899999999 7999999999999 8999975
No 60
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=38.94 E-value=53 Score=25.20 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=30.1
Q ss_pred eEEEEEEECCCCcccCceEEEEeCCEEEEEEeCcC
Q 021718 69 SSFSKEFPISSNYDFNEISAKFEGGKLFIKHPKII 103 (308)
Q Consensus 69 grF~R~f~LP~nVD~d~IsA~feNGVLtItlPK~~ 103 (308)
..|.-.+.||. +..++|+-.+.++.|+|+.-+..
T Consensus 7 ~~~~v~~dlpG-~~~edI~v~v~~~~L~I~g~~~~ 40 (83)
T cd06526 7 EKFQVTLDVKG-FKPEELKVKVSDNKLVVEGKHEE 40 (83)
T ss_pred eeEEEEEECCC-CCHHHcEEEEECCEEEEEEEEee
Confidence 36999999995 99999999999999999988754
No 61
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=37.63 E-value=45 Score=26.04 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=27.6
Q ss_pred cCCeEEEEEEcC-CCCCCCcEEEEEeCceEEEE
Q 021718 27 EDEFDTLIVNLP-GFRKEQLKVQVTTSKKMRIS 58 (308)
Q Consensus 27 tdd~yvI~vdLP-GfkkEdI~V~V~d~~~L~Is 58 (308)
....|.-.+.|| ++..+.|+-++.+ |.|+|+
T Consensus 58 ~~g~f~r~i~LP~~v~~~~i~A~~~n-GvL~I~ 89 (92)
T cd06472 58 SSGRFVRRFRLPENADADEVKAFLEN-GVLTVT 89 (92)
T ss_pred eccEEEEEEECCCCCCHHHCEEEEEC-CEEEEE
Confidence 456889999999 7999999999998 899997
No 62
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=37.61 E-value=66 Score=25.21 Aligned_cols=34 Identities=9% Similarity=0.286 Sum_probs=29.3
Q ss_pred eEEEEEEECCCCcccCceEEEEeCCEEEEEEeCcC
Q 021718 69 SSFSKEFPISSNYDFNEISAKFEGGKLFIKHPKII 103 (308)
Q Consensus 69 grF~R~f~LP~nVD~d~IsA~feNGVLtItlPK~~ 103 (308)
..|.-.+.||- ++.++|+-.+.++.|+|+.-+..
T Consensus 11 ~~~~v~~~lPG-~~kedi~v~~~~~~L~I~g~~~~ 44 (90)
T cd06470 11 NNYRITLAVAG-FSEDDLEIEVENNQLTVTGKKAD 44 (90)
T ss_pred CeEEEEEECCC-CCHHHeEEEEECCEEEEEEEEcc
Confidence 35888999994 89999999999999999987744
No 63
>PRK10743 heat shock protein IbpA; Provisional
Probab=36.48 E-value=55 Score=28.27 Aligned_cols=31 Identities=10% Similarity=0.259 Sum_probs=26.8
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEeC
Q 021718 70 SFSKEFPISSNYDFNEISAKFEGGKLFIKHPK 101 (308)
Q Consensus 70 rF~R~f~LP~nVD~d~IsA~feNGVLtItlPK 101 (308)
.|.-.+.|| .++.++|.-.+++|+|+|+.-+
T Consensus 46 ~~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~ 76 (137)
T PRK10743 46 HYRIAIAVA-GFAESELEITAQDNLLVVKGAH 76 (137)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEE
Confidence 377777888 7899999999999999999865
No 64
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=36.14 E-value=25 Score=28.32 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=17.4
Q ss_pred eeehhHHHHHHHHHHHHHHhhhhh
Q 021718 278 KIMNFTVAILLVLVVYIYAKNAIG 301 (308)
Q Consensus 278 k~~~~~~~~llvlvlg~y~~~~i~ 301 (308)
+-+-|+++..|+|+|++|+--=++
T Consensus 49 kev~l~l~ail~lL~a~Ya~fyl~ 72 (79)
T PF15168_consen 49 KEVALVLAAILVLLLAFYAFFYLN 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677888899999999754443
No 65
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=36.01 E-value=23 Score=27.93 Aligned_cols=15 Identities=40% Similarity=0.722 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHH-HHH
Q 021718 281 NFTVAILLVLVV-YIY 295 (308)
Q Consensus 281 ~~~~~~llvlvl-g~y 295 (308)
||-+++||+||| |++
T Consensus 3 n~Si~VLlaLvLIg~f 18 (71)
T PF04202_consen 3 NLSIAVLLALVLIGSF 18 (71)
T ss_pred chhHHHHHHHHHHhhh
Confidence 788888887775 544
No 66
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=34.76 E-value=43 Score=24.08 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhhc
Q 021718 281 NFTVAILLVLVVYIYAKNAIGY 302 (308)
Q Consensus 281 ~~~~~~llvlvlg~y~~~~i~~ 302 (308)
|+ ++.+++|++|+|+-+.++.
T Consensus 17 ~i-v~AilIl~vG~~va~~v~~ 37 (53)
T PF05552_consen 17 NI-VGAILILIVGWWVAKFVRK 37 (53)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHH
Confidence 44 3456788999999888763
No 67
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.49 E-value=40 Score=26.47 Aligned_cols=25 Identities=40% Similarity=0.723 Sum_probs=14.6
Q ss_pred CceeehhHHHH-HHHHH-----HHHHHhhhh
Q 021718 276 PRKIMNFTVAI-LLVLV-----VYIYAKNAI 300 (308)
Q Consensus 276 ~rk~~~~~~~~-llvlv-----lg~y~~~~i 300 (308)
|+-++=+||++ ||+++ |++|++..+
T Consensus 12 PGlIVLlvV~g~ll~flvGnyvlY~Yaqk~l 42 (69)
T PF04689_consen 12 PGLIVLLVVAGLLLVFLVGNYVLYVYAQKTL 42 (69)
T ss_pred CCeEEeehHHHHHHHHHHHHHHHHHHHhhcC
Confidence 66677778874 34444 455555543
No 68
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=31.79 E-value=31 Score=28.96 Aligned_cols=13 Identities=38% Similarity=0.383 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHh
Q 021718 285 AILLVLVVYIYAK 297 (308)
Q Consensus 285 ~~llvlvlg~y~~ 297 (308)
++|+.||+|||.-
T Consensus 64 a~i~alViaIY~Y 76 (108)
T KOG4782|consen 64 AGIGALVIAIYGY 76 (108)
T ss_pred HHHHHHHHHhhhh
Confidence 4889999999974
No 69
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=31.14 E-value=73 Score=22.81 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=19.5
Q ss_pred CCCCCCCcEEEEEeCceEEEEEEeec
Q 021718 38 PGFRKEQLKVQVTTSKKMRISGERPL 63 (308)
Q Consensus 38 PGfkkEdI~V~V~d~~~L~IsGer~~ 63 (308)
++|...+|+|.+.+ +.+.++|.-..
T Consensus 12 ~~~~~~~i~v~v~~-g~v~L~G~v~s 36 (64)
T PF04972_consen 12 PWLPDSNISVSVEN-GVVTLSGEVPS 36 (64)
T ss_dssp -CTT-TTEEEEEEC-TEEEEEEEESS
T ss_pred cccCCCeEEEEEEC-CEEEEEeeCcH
Confidence 36777789999998 79999998654
No 70
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=30.51 E-value=60 Score=24.71 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhcccc
Q 021718 282 FTVAILLVLVVYIYAKNAIGYIGK 305 (308)
Q Consensus 282 ~~~~~llvlvlg~y~~~~i~~~~~ 305 (308)
|+++++||++|+-|.--.-||.++
T Consensus 5 f~~ti~lvv~LYgY~yhLYrsek~ 28 (56)
T TIGR02736 5 FAFTLLLVIFLYAYIYHLYRSQKK 28 (56)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcc
Confidence 667788899998888777775544
No 71
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=29.74 E-value=1.4e+02 Score=22.02 Aligned_cols=40 Identities=8% Similarity=0.117 Sum_probs=30.9
Q ss_pred CeEEEEEEcCC-CCCCCcEEEEEeCceEEEEEEeecCCceeeE
Q 021718 29 EFDTLIVNLPG-FRKEQLKVQVTTSKKMRISGERPLGNNKWSS 70 (308)
Q Consensus 29 d~yvI~vdLPG-fkkEdI~V~V~d~~~L~IsGer~~~e~~~gr 70 (308)
+.|.+.++|++ +.+++....+.+ +.|.|+=.+... ..|.+
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~-~~l~i~L~K~~~-~~W~~ 76 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGN-GVLVFTLVKKEP-GIWEA 76 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeC-CEEEEEEEeCCC-Ccccc
Confidence 56888999995 799999999998 789998555432 45654
No 72
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=29.56 E-value=2.1e+02 Score=22.51 Aligned_cols=65 Identities=23% Similarity=0.384 Sum_probs=34.5
Q ss_pred EEEEEEcCCCCCCCc-----------------EEEEE--eCceEEEEEEeecCCceeeEEEEEEE-CCCCcccCceEEEE
Q 021718 31 DTLIVNLPGFRKEQL-----------------KVQVT--TSKKMRISGERPLGNNKWSSFSKEFP-ISSNYDFNEISAKF 90 (308)
Q Consensus 31 yvI~vdLPGfkkEdI-----------------~V~V~--d~~~L~IsGer~~~e~~~grF~R~f~-LP~nVD~d~IsA~f 90 (308)
|.-.+++||.++++| .|.+. +.|.|...|.- |--|...+. +...-=.=.+.+.+
T Consensus 1 f~~~i~vpg~sk~~ly~~~~~W~~~~~~~~~s~I~~~dke~g~I~~~g~~------~~~f~~~~ls~~~~~i~y~l~i~~ 74 (91)
T PF14730_consen 1 FTKVIEVPGMSKDQLYDRAKKWLAKNFKSANSVIQYSDKEEGTIIAKGEE------WLVFSSSFLSLDRTRINYTLIIDC 74 (91)
T ss_pred CcEEEEcCCCCHHHHHHHHHHHHHHhcccccceEEEEcCCCCEEEEEEEE------EEEEccccccccceEEEEEEEEEE
Confidence 344677777777664 55544 33566666643 223332211 22211112355677
Q ss_pred eCCEEEEEEeC
Q 021718 91 EGGKLFIKHPK 101 (308)
Q Consensus 91 eNGVLtItlPK 101 (308)
.||-+++++-.
T Consensus 75 kDgk~r~~~~~ 85 (91)
T PF14730_consen 75 KDGKYRLTITN 85 (91)
T ss_pred ECCEEEEEEEE
Confidence 88988888754
No 73
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=28.76 E-value=76 Score=25.03 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=28.0
Q ss_pred cCCeEEEEEEcC-CCCCCCcEEEE-EeCceEEEEE
Q 021718 27 EDEFDTLIVNLP-GFRKEQLKVQV-TTSKKMRISG 59 (308)
Q Consensus 27 tdd~yvI~vdLP-GfkkEdI~V~V-~d~~~L~IsG 59 (308)
....|.=.+.|| ++..+.|+-.+ .+ |.|+|+.
T Consensus 52 ~~~~F~R~~~LP~~Vd~~~i~A~~~~d-GvL~I~~ 85 (87)
T cd06481 52 EYQEFVREAQLPEHVDPEAVTCSLSPS-GHLHIRA 85 (87)
T ss_pred EeeEEEEEEECCCCcChHHeEEEeCCC-ceEEEEc
Confidence 357889999999 79999999999 56 8999986
No 74
>COG5615 Predicted integral membrane protein [Function unknown]
Probab=28.53 E-value=30 Score=31.07 Aligned_cols=27 Identities=22% Similarity=0.344 Sum_probs=21.4
Q ss_pred hhhcCCceeehhHHH-HHHHHHHHHHHh
Q 021718 271 MELKQPRKIMNFTVA-ILLVLVVYIYAK 297 (308)
Q Consensus 271 ~~~kk~rk~~~~~~~-~llvlvlg~y~~ 297 (308)
-+|||=||++++..+ +||+..||+-+.
T Consensus 130 ~a~~kIRk~t~vni~lGllli~l~~A~~ 157 (161)
T COG5615 130 DAMKKIRKITHVNITLGLLLIILGLAVP 157 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999877 777777777554
No 75
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=28.26 E-value=43 Score=32.22 Aligned_cols=17 Identities=12% Similarity=0.266 Sum_probs=11.9
Q ss_pred ehhHHHHHHHHHHHHHH
Q 021718 280 MNFTVAILLVLVVYIYA 296 (308)
Q Consensus 280 ~~~~~~~llvlvlg~y~ 296 (308)
.=+|+++|+++|||||-
T Consensus 196 aliVitl~vf~LvgLyr 212 (259)
T PF07010_consen 196 ALIVITLSVFTLVGLYR 212 (259)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33455577888999994
No 76
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=28.17 E-value=2.2e+02 Score=25.48 Aligned_cols=44 Identities=18% Similarity=0.441 Sum_probs=31.5
Q ss_pred CCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 021718 42 KEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFEGGKLFIKHP 100 (308)
Q Consensus 42 kEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~feNGVLtItlP 100 (308)
|++++|++++ +.|+|+|-+ |...+.| |..+ ...++++.|.|...
T Consensus 11 P~~V~v~~~~-~~v~v~Gp~-------G~l~~~l--~~~i-----~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDG-NVVTVKGPK-------GELSRTL--HPGV-----TVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeC-CEEEEEcCC-------eEEEEEc--CCCe-----EEEEECCEEEEEec
Confidence 6888999988 799999976 4566555 4433 44567888877754
No 77
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=27.74 E-value=1.3e+02 Score=22.14 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=29.2
Q ss_pred eeeE-EcCCeEEEEEEcCCCCCCCcEEEEEeCceEEEEEE
Q 021718 22 TEWA-REDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGE 60 (308)
Q Consensus 22 vDI~-Etdd~yvI~vdLPGfkkEdI~V~V~d~~~L~IsGe 60 (308)
+.+. -..+.|.|.+..+||..-.-.|.+..+....|...
T Consensus 27 ~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~ 66 (71)
T PF08308_consen 27 LTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVT 66 (71)
T ss_pred ceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEE
Confidence 4555 45888999999999988888888885456666543
No 78
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=27.67 E-value=1.4e+02 Score=21.42 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=31.9
Q ss_pred CCeEEEEEEcCC-CCCCCcEEEEEeCceEEEEEEeecCCceeeE
Q 021718 28 DEFDTLIVNLPG-FRKEQLKVQVTTSKKMRISGERPLGNNKWSS 70 (308)
Q Consensus 28 dd~yvI~vdLPG-fkkEdI~V~V~d~~~L~IsGer~~~e~~~gr 70 (308)
+..|.+.++|++ +.+++....+.+ +.|.|.=.+...+..|.+
T Consensus 40 ~~~~~~~~~L~~~I~~~~s~~~~~~-~~l~i~L~K~~~~~~W~~ 82 (84)
T cd06463 40 GKEYLLEGELFGPIDPEESKWTVED-RKIEITLKKKEPGEWWPR 82 (84)
T ss_pred CCceEEeeEccCccchhhcEEEEeC-CEEEEEEEECCCCCCCcc
Confidence 477899999996 788889999988 789998665544355543
No 79
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=26.86 E-value=88 Score=27.35 Aligned_cols=32 Identities=13% Similarity=0.378 Sum_probs=27.5
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEeCc
Q 021718 70 SFSKEFPISSNYDFNEISAKFEGGKLFIKHPKI 102 (308)
Q Consensus 70 rF~R~f~LP~nVD~d~IsA~feNGVLtItlPK~ 102 (308)
.|.-.+.|| .++.++|.-.+++|+|+|+.-+.
T Consensus 44 ~y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~ 75 (142)
T PRK11597 44 HYRITLALA-GFRQEDLDIQLEGTRLTVKGTPE 75 (142)
T ss_pred EEEEEEEeC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 377788888 68899999999999999998653
No 80
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=25.90 E-value=1.6e+02 Score=24.28 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=29.1
Q ss_pred CCceeeEEcCCeEEEEEEcCCC-----CCCCcEEEEEeCceEEEE
Q 021718 19 EPSTEWAREDEFDTLIVNLPGF-----RKEQLKVQVTTSKKMRIS 58 (308)
Q Consensus 19 eP~vDI~Etdd~yvI~vdLPGf-----kkEdI~V~V~d~~~L~Is 58 (308)
.|.+.|+++++.|.|.+--+.. .++...|+-.+ +.|.|.
T Consensus 25 ~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~-g~~fI~ 68 (95)
T PF12992_consen 25 KPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEED-GNLFIE 68 (95)
T ss_pred CCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeC-CEEEEe
Confidence 4999999999999998866543 66666677555 566654
No 81
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=25.87 E-value=3e+02 Score=24.76 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=31.3
Q ss_pred CCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 021718 42 KEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFEGGKLFIKHP 100 (308)
Q Consensus 42 kEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~feNGVLtItlP 100 (308)
|++++|++.+ +.|+|.|.+ |...+.|. |. .|....+++.|.|...
T Consensus 7 P~~V~v~i~~-~~i~vkGp~-------G~L~~~~~-~~-----~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEG-NIVTVKGPK-------GEVTRELW-YP-----GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeC-CEEEEECCC-------eEEEEEEe-CC-----cEEEEEeCCEEEEEeC
Confidence 6788999998 799999976 45555553 33 3444568888877743
No 82
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=25.62 E-value=1.3e+02 Score=23.65 Aligned_cols=32 Identities=9% Similarity=0.174 Sum_probs=27.0
Q ss_pred eEEEEEEECCCCcccCceEEEEeCCEEEEEEeC
Q 021718 69 SSFSKEFPISSNYDFNEISAKFEGGKLFIKHPK 101 (308)
Q Consensus 69 grF~R~f~LP~nVD~d~IsA~feNGVLtItlPK 101 (308)
..|.-.+.||. +++++|+-.+.||.|+|+.-+
T Consensus 7 d~y~v~~dlpG-~~~edi~V~v~~~~L~I~g~~ 38 (83)
T cd06476 7 DKYQVFLDVCH-FTPDEITVRTVDNLLEVSARH 38 (83)
T ss_pred CeEEEEEEcCC-CCHHHeEEEEECCEEEEEEEE
Confidence 34788888884 679999999999999999875
No 83
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=25.49 E-value=2.8e+02 Score=25.25 Aligned_cols=51 Identities=16% Similarity=0.269 Sum_probs=33.8
Q ss_pred EcCCCCCCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 021718 36 NLPGFRKEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFEGGKLFIKHP 100 (308)
Q Consensus 36 dLPGfkkEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~feNGVLtItlP 100 (308)
..|=.=|+.++|++++ +.|+|+|.+ |...+.|.-+ .|...++||.|.|...
T Consensus 7 ~~pI~IP~~V~v~i~~-~~v~VkGp~-------G~L~~~~~~~------~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 7 REEIEIPEGVTVEIEG-LVVTVKGPK-------GELTRDFWYP------GVTISVEDGKVVIETE 57 (180)
T ss_pred cccEEcCCCCEEEEEC-CEEEEECCC-------eEEEEEecCC------cEEEEEECCEEEEEEC
Confidence 3343347888999998 799999976 4455555422 3444568887777743
No 84
>PF12669 P12: Virus attachment protein p12 family
Probab=25.34 E-value=55 Score=24.52 Aligned_cols=6 Identities=17% Similarity=0.074 Sum_probs=4.1
Q ss_pred hhhhhc
Q 021718 297 KNAIGY 302 (308)
Q Consensus 297 ~~~i~~ 302 (308)
++.+|.
T Consensus 18 r~~~k~ 23 (58)
T PF12669_consen 18 RKFIKD 23 (58)
T ss_pred HHHHHH
Confidence 777764
No 85
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=24.84 E-value=60 Score=26.48 Aligned_cols=16 Identities=13% Similarity=0.341 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhh
Q 021718 283 TVAILLVLVVYIYAKN 298 (308)
Q Consensus 283 ~~~~llvlvlg~y~~~ 298 (308)
++++++++||++|-.|
T Consensus 32 ilfviF~~~L~~yy~k 47 (83)
T PF05814_consen 32 ILFVIFFCVLQVYYIK 47 (83)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3346688889998544
No 86
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=24.73 E-value=87 Score=25.09 Aligned_cols=20 Identities=35% Similarity=0.624 Sum_probs=10.2
Q ss_pred CCCCCcEEEEEeCceEEEEEE
Q 021718 40 FRKEQLKVQVTTSKKMRISGE 60 (308)
Q Consensus 40 fkkEdI~V~V~d~~~L~IsGe 60 (308)
|+.+.|.|.... |.|.|+|+
T Consensus 41 y~~~~I~l~t~~-G~l~I~G~ 60 (85)
T TIGR02856 41 FSPEEVKLNSTN-GKITIEGK 60 (85)
T ss_pred ECCCEEEEEcCc-eEEEEEcc
Confidence 445555555554 45555554
No 87
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=24.45 E-value=2.4e+02 Score=25.32 Aligned_cols=44 Identities=14% Similarity=0.409 Sum_probs=31.4
Q ss_pred CCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 021718 42 KEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFEGGKLFIKHP 100 (308)
Q Consensus 42 kEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~feNGVLtItlP 100 (308)
|+++.|++.+ +.|+|+|.+ |...+.| |..+ ...++|+.|.|...
T Consensus 12 P~~V~v~~~~-~~v~vkGp~-------G~l~~~~--~~~v-----~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTING-NVVTVKGPK-------GELSRTL--NPDV-----TVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECCC-------EEEEEEc--CCCe-----EEEEECCEEEEEcC
Confidence 6888999998 799999976 5566666 4433 33457887777743
No 88
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=24.29 E-value=99 Score=24.32 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=24.9
Q ss_pred EEEEEEcC-CCCCCCcEEEEEeCceEEEEE
Q 021718 31 DTLIVNLP-GFRKEQLKVQVTTSKKMRISG 59 (308)
Q Consensus 31 yvI~vdLP-GfkkEdI~V~V~d~~~L~IsG 59 (308)
|.=.+.|| ++..+.|+-.+..+|.|+|+.
T Consensus 55 f~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 84 (86)
T cd06497 55 FHRRYRLPSNVDQSAITCSLSADGMLTFSG 84 (86)
T ss_pred EEEEEECCCCCChHHeEEEeCCCCEEEEEe
Confidence 77789999 799999999995338999985
No 89
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=23.54 E-value=1.1e+02 Score=24.01 Aligned_cols=32 Identities=9% Similarity=0.139 Sum_probs=26.7
Q ss_pred eEEEEEEcC-CCCCCCcEEEEEeCceEEEEEEe
Q 021718 30 FDTLIVNLP-GFRKEQLKVQVTTSKKMRISGER 61 (308)
Q Consensus 30 ~yvI~vdLP-GfkkEdI~V~V~d~~~L~IsGer 61 (308)
.|.=.+.|| ++..+.|+-++..+|.|+|+.-+
T Consensus 51 eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk 83 (84)
T cd06498 51 EFQRKYRIPADVDPLTITSSLSPDGVLTVCGPR 83 (84)
T ss_pred EEEEEEECCCCCChHHcEEEeCCCCEEEEEEeC
Confidence 388889999 89999999999733899998643
No 90
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=22.74 E-value=1.6e+02 Score=22.05 Aligned_cols=30 Identities=7% Similarity=0.168 Sum_probs=26.4
Q ss_pred EEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 021718 71 FSKEFPISSNYDFNEISAKFEGGKLFIKHP 100 (308)
Q Consensus 71 F~R~f~LP~nVD~d~IsA~feNGVLtItlP 100 (308)
..-.|.||..++.++|...|.+.-|.|.+.
T Consensus 10 V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 10 VTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 566778999999999999999988899885
No 91
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=21.82 E-value=1.7e+02 Score=22.98 Aligned_cols=31 Identities=13% Similarity=0.256 Sum_probs=27.1
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEeC
Q 021718 70 SFSKEFPISSNYDFNEISAKFEGGKLFIKHPK 101 (308)
Q Consensus 70 rF~R~f~LP~nVD~d~IsA~feNGVLtItlPK 101 (308)
.|.-.+.|| .+++++|.-.+.++.|+|+.-+
T Consensus 11 ~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~ 41 (86)
T cd06475 11 RWKVSLDVN-HFAPEELVVKTKDGVVEITGKH 41 (86)
T ss_pred eEEEEEECC-CCCHHHEEEEEECCEEEEEEEE
Confidence 488888888 5789999999999999999865
No 92
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=21.49 E-value=78 Score=30.93 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=24.2
Q ss_pred hhhhhhcCCceeehhHHHHHHHHHHHHHH-hhhhh
Q 021718 268 GWVMELKQPRKIMNFTVAILLVLVVYIYA-KNAIG 301 (308)
Q Consensus 268 glv~~~kk~rk~~~~~~~~llvlvlg~y~-~~~i~ 301 (308)
|+-.=|.-+.|++.+|. +|..|.+|+|. +++.+
T Consensus 226 G~~~lltD~~kl~~~vg-g~T~LA~GvYtar~gt~ 259 (276)
T PF12037_consen 226 GFRALLTDRDKLTTTVG-GLTALAAGVYTAREGTR 259 (276)
T ss_pred HHHHHHhCHHHHHHHHH-HHHHHHHHHHHhhHHHH
Confidence 66666777888888755 88889999996 44433
No 93
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=20.97 E-value=3.1e+02 Score=25.13 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=35.4
Q ss_pred EEcCCCCCCCcEEEEEeCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 021718 35 VNLPGFRKEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFEGGKLFIKHP 100 (308)
Q Consensus 35 vdLPGfkkEdI~V~V~d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~feNGVLtItlP 100 (308)
+..|=.=|++++|++.+ +.|+|+|-+ |...+.|+=+. ..|....+||.|.|+.+
T Consensus 6 ~~~~I~IP~~V~V~i~~-~~v~VkGp~-------G~L~~~~~~~~----~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 6 SSEKIRIPEGVTVTVKS-RKVTVTGKY-------GELTRSFRHLP----VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred cCCCEecCCCCEEEEEC-CEEEEECCC-------ceEEEEecCCC----ceEEEEeCCCEEEEEeC
Confidence 34443347899999998 799999976 44555443211 24555678888777744
No 94
>KOG4356 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.82 E-value=22 Score=35.15 Aligned_cols=72 Identities=14% Similarity=0.219 Sum_probs=55.7
Q ss_pred eeEEcCCeEEEEEEcCCCCCCCcEEEEE--eCceEEEEEEeecCCceeeEEEEEEECCCCcccCceEEEEe--CCEEEEE
Q 021718 23 EWAREDEFDTLIVNLPGFRKEQLKVQVT--TSKKMRISGERPLGNNKWSSFSKEFPISSNYDFNEISAKFE--GGKLFIK 98 (308)
Q Consensus 23 DI~Etdd~yvI~vdLPGfkkEdI~V~V~--d~~~L~IsGer~~~e~~~grF~R~f~LP~nVD~d~IsA~fe--NGVLtIt 98 (308)
.+.+..+.+.+.++||++.. ....++. + .+|.|.+.+. .|.-...+|..++.+...|.|. --.|.|+
T Consensus 234 ~~~e~p~~i~~e~~lp~~n~-~~~~sl~v~e-~ri~i~~~~~-------~y~l~~~~~~~~~~~~~~a~Fd~~~~al~i~ 304 (310)
T KOG4356|consen 234 LHDEAPDEIEAEIDLPNYNS-MQEFSLLVGE-DRIVIETRKQ-------GYRLNLNIPYIIDQDRAPALFDKTTKALHIT 304 (310)
T ss_pred CcccCcchhhhhhhcccchh-hhccccccCC-cceEeccCcc-------ceeeccccccccCcccchhhHHHHHHhhhee
Confidence 56677888899999999987 5555544 4 4778876554 3777788899999999999995 4789999
Q ss_pred EeCcC
Q 021718 99 HPKII 103 (308)
Q Consensus 99 lPK~~ 103 (308)
||-..
T Consensus 305 ~P~~~ 309 (310)
T KOG4356|consen 305 IPVVR 309 (310)
T ss_pred ccccC
Confidence 98754
No 95
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=20.77 E-value=66 Score=26.50 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhhhhhccc
Q 021718 284 VAILLVLVVYIYAKNAIGYIG 304 (308)
Q Consensus 284 ~~~llvlvlg~y~~~~i~~~~ 304 (308)
+.+.|+.++|+|+++-|.++.
T Consensus 13 ~~i~l~ii~~~~~~~~~~~l~ 33 (108)
T PF09682_consen 13 LSIVLAIIAGIIVKYVIKYLK 33 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334477789999998887653
No 96
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=20.30 E-value=1.1e+02 Score=21.65 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHhh
Q 021718 282 FTVAILLVLVVYIYAKN 298 (308)
Q Consensus 282 ~~~~~llvlvlg~y~~~ 298 (308)
|-...|||+|||+.|-|
T Consensus 19 Ly~GlLlifvl~vLFss 35 (39)
T PRK00753 19 LYLGLLLVFVLGILFSS 35 (39)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44457889999987765
No 97
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.17 E-value=44 Score=26.29 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=13.0
Q ss_pred hcCCceeehhHHHHHHHHHHHHHHhh
Q 021718 273 LKQPRKIMNFTVAILLVLVVYIYAKN 298 (308)
Q Consensus 273 ~kk~rk~~~~~~~~llvlvlg~y~~~ 298 (308)
|||-+++.-+...++++|++|.++-+
T Consensus 1 MKK~kii~iii~li~i~li~~~~~~~ 26 (85)
T PF11337_consen 1 MKKKKIILIIIILIVISLIIGIYYFF 26 (85)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 56655554443333334455655543
Done!