RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 021718
(308 letters)
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 57.6 bits (140), Expect = 5e-11
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 24 WAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGNNK---WSSFSKEFPISSN 80
W + D+ + V+LPG +KE +KV+V + ISG+R + + F + F + +
Sbjct: 1 WYQTDDEVVVTVDLPGVKKEDIKVEVE-DNVLTISGKREEEEERERSYGEFERSFELPED 59
Query: 81 YDFNEISAKFEGGKLFIKHPK 101
D + A E G L I PK
Sbjct: 60 VDPEKSKASLENGVLEITLPK 80
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 56.8 bits (138), Expect = 1e-10
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 26 REDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGNNK----------WSSFSKEF 75
+D + + +LPGF+KE +KV+V + ISGER + + SFS+ F
Sbjct: 5 TDDAY-VVEADLPGFKKEDIKVEVE-DGVLTISGEREEEEEEEENYLRRERSYGSFSRSF 62
Query: 76 PISSNYDFNEISAKFEGGKLFIKHPK 101
+ + D ++I A E G L I PK
Sbjct: 63 RLPEDVDPDKIKASLENGVLTITLPK 88
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. ScHsp26 is
temperature-regulated, it switches from an inactive to a
chaperone-active form upon elevation in temperature. It
associates into large 24-mers storage forms which upon
heat shock disassociate into dimers. These dimers
initiate the interaction with non-native substrate
proteins and re-assemble into large globular assemblies
having one monomer of substrate bound per dimer. This
group also contains Arabidopsis thaliana (Ath) Hsp15.7,
a peroxisomal matrix protein which can complement the
morphological phenotype of S. cerevisiae mutants
deficient in Hsps26. AthHsp15.7 is minimally expressed
under normal conditions and is strongly induced by heat
and oxidative stress. Also belonging to this group is
wheat HSP16.9 which differs in quaternary structure from
the shell-type particles of ScHsp26, it assembles as a
dodecameric double disc, with each disc organized as a
trimer of dimers.
Length = 92
Score = 53.8 bits (130), Expect = 1e-09
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 24 WAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGER----PLGNNKW-------SSFS 72
W E ++PG +KE +KV+V + +RISGER + W F
Sbjct: 4 WKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFV 63
Query: 73 KEFPISSNYDFNEISAKFEGGKLFIKHPK 101
+ F + N D +E+ A E G L + PK
Sbjct: 64 RRFRLPENADADEVKAFLENGVLTVTVPK 92
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 44.7 bits (106), Expect = 8e-06
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 12/97 (12%)
Query: 18 FEPSTEWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGNNKWS-------- 69
P + D+ + LPG KE +++ V + I GER +
Sbjct: 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVE-GNTLTIRGEREEEEEEEEEGYLRRER 97
Query: 70 ---SFSKEFPISSNYDFNEISAKFEGGKLFIKHPKII 103
F + F + D I AK++ G L + PK
Sbjct: 98 AYGEFERTFRLPEKVDPEVIKAKYKNGLLTVTLPKAE 134
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 42.2 bits (100), Expect = 2e-05
Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 23 EWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGER-PLGNNKW-------SSFSKE 74
+ + + + +++PGF+ E+LKV+V ++ + ++ SFS++
Sbjct: 1 DIKEDKDAFVVKLDVPGFKPEELKVKVEDNRVLVKGKHEKEEEDDHGLRSERSYRSFSRK 60
Query: 75 FPISSNYDFNEISAKFEGGKLFIKHPKIITPADH 108
F + N D +++ A + G L + PK+ P
Sbjct: 61 FVLPENADPDKVKASLKDGVLTVTVPKLEPPEKK 94
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 38.4 bits (90), Expect = 0.004
Identities = 30/151 (19%), Positives = 51/151 (33%), Gaps = 3/151 (1%)
Query: 115 QAQAVTEAPKPQKPESDYSEAHQKREQDQQAATATQQVISPPSAAGTNGPEKSGKVDRPR 174
+A A D S RE + A A Q +AA + + R +
Sbjct: 499 KAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAAVAAAIARAK 558
Query: 175 KSTIAEKQSSRKANNNEEAKAASVEAKITATQKNKHLAEEVKSTSGARETVEKDKKVVDY 234
A++ ++ +A + K A+V A I + K + + + KK
Sbjct: 559 AKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAAQQAASAEPEEQVAEVDPKKAAVA 618
Query: 235 DAAASAEAGKEAAGSLNERASKYRTEDLKQA 265
A A A+A K + E D ++A
Sbjct: 619 AAIARAKAKKAEQQANAEPE---EPVDPRKA 646
Score = 34.5 bits (80), Expect = 0.061
Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 7/139 (5%)
Query: 109 QQEEKPQAQAVTEAPKPQKPESDYSEAHQKREQDQQAATATQQVISPPSAAGTNGPEKSG 168
Q+ PK + + A + ++ QQAA+A + +
Sbjct: 563 AQQAANAEAEEEVDPKKAAVAAAIARA-KAKKAAQQAASAEPEEQVAEVDPKKAAVAAAI 621
Query: 169 KVDRPRKSTIAEKQSSRKANNNEEAKAASVEAKITATQKNKHLAEEVKSTSGARETVEKD 228
+ +K AE+Q++ + + + A+V A I A K + A++ + E E
Sbjct: 622 ARAKAKK---AEQQANAEPEEPVDPRKAAVAAAI-ARAKARKAAQQQANA--EPEEAEDP 675
Query: 229 KKVVDYDAAASAEAGKEAA 247
KK A A A+A K A
Sbjct: 676 KKAAVAAAIARAKAKKAAQ 694
Score = 30.3 bits (69), Expect = 1.6
Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 7/145 (4%)
Query: 122 APKPQKPESDYSEAHQKREQDQQAATATQQVISPPSAAGTNGPEKSGKVDRPRKSTIAEK 181
A + D A R + ++AA VI + + RK+ +
Sbjct: 477 AEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSA---VIAAREARKAQARAR 533
Query: 182 QSSRKANNNEEAKAASVEAKITATQKNKHLAEEVKSTSGARETVEKDKKVVDYDAAASAE 241
Q+ ++A + K A+V A I A K K A++ + E K V A A A+
Sbjct: 534 QAEKQAAAAADPKKAAVAAAI-ARAKAKKAAQQAANAEAEEEVDPKKAAVA--AAIARAK 590
Query: 242 AGKEA-AGSLNERASKYRTEDLKQA 265
A K A + E + D K+A
Sbjct: 591 AKKAAQQAASAEPEEQVAEVDPKKA 615
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 37.7 bits (87), Expect = 0.007
Identities = 35/150 (23%), Positives = 51/150 (34%), Gaps = 7/150 (4%)
Query: 109 QQEEKPQAQAVTEAPKPQKPESDYSEAHQKREQDQQAATATQQVISPPSAAGTNGPEKSG 168
Q++ K Q E K Q D +A QK + Q A + + N P+ +
Sbjct: 209 QEDAKRAQQLKEELDKKQI---DADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPAD 265
Query: 169 KVDRPRKSTIAEKQSSRKANNNEEAKAASVEAKITATQKNKHLAEEVKSTSGARETVE-- 226
+AE Q E K EA K L +E K++ E E
Sbjct: 266 TSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELE 325
Query: 227 --KDKKVVDYDAAASAEAGKEAAGSLNERA 254
K ++ V D + + SLNE A
Sbjct: 326 AQKKREPVAEDLQKTKPQVEAQPTSLNEDA 355
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 37.4 bits (86), Expect = 0.010
Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 16/161 (9%)
Query: 4 KPLAAAQTNREYEKFEPSTEWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPL 63
+ A Q R E+++ ED + +L Q +++ R SGE+P
Sbjct: 666 RQFAQTQQQRYGEQYQHDVPVNAEDADAA--------AEAELARQFAQTQQQRYSGEQPA 717
Query: 64 GNNKWSSFSKEFPISSNYDFNEISAKFEGGKLFIKHPKIITPADHQQEEKPQAQAVTEAP 123
G N +S +++F+ + A + G I+ P Q+ Q +
Sbjct: 718 GANPFS--------LDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQ 769
Query: 124 KPQKPESDYSEAHQKREQDQQAATATQQVISPPSAAGTNGP 164
+P P+ Y + Q Q Q V P P
Sbjct: 770 QPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQP 810
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 36.3 bits (84), Expect = 0.018
Identities = 26/119 (21%), Positives = 34/119 (28%), Gaps = 13/119 (10%)
Query: 101 KIITPADHQQEEKPQAQAVTEAPKPQKPESDYSEAHQKREQDQQAATATQQVISPPSAA- 159
+ I P Q PQ A A P +S + + Q A V P AA
Sbjct: 377 QHIKPVFTQPAAAPQPSAAA-AASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAV 435
Query: 160 -----GTNGPEKSGKVDRPRKSTIAEKQSS------RKANNNEEAKAASVEAKITATQK 207
T + K K SS R E +++ T TQK
Sbjct: 436 PVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGTQK 494
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an
alpha crystallin domain (ACD) similar to Lactobacillus
plantarum (Lp) small heat shock proteins (sHsp) HSP
18.5, HSP 18.55 and HSP 19.3. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. Transcription
of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is
regulated by a variety of stresses including heat, cold
and ethanol. Early growing L. plantarum cells contain
elevated levels of these mRNAs which rapidly fall of as
the cells enter stationary phase. Also belonging to this
group is Bifidobacterium breve (Bb) HSP20 and Oenococcus
oenis (syn. Leuconostoc oenos) (Oo) HSP18.
Transcription of the gene encoding BbHSP20 is strongly
induced following heat or osmotic shock, and that of the
gene encoding OoHSP18 following heat, ethanol or acid
shock. OoHSP18 is peripherally associated with the
cytoplasmic membrane.
Length = 93
Score = 33.2 bits (77), Expect = 0.025
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 16/88 (18%)
Query: 27 EDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGNNK-------------WSSFSK 73
+DE+ + +LPGF+KE +K+ + IS +R ++ + SFS+
Sbjct: 9 DDEY-IVEADLPGFKKEDIKLDYKDGY-LTISAKRDESKDEKDKKGNYIRRERYYGSFSR 66
Query: 74 EFPISSNYDFNEISAKFEGGKLFIKHPK 101
F + N D EI AK+E G L I PK
Sbjct: 67 SFYLP-NVDEEEIKAKYENGVLKITLPK 93
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 35.5 bits (81), Expect = 0.044
Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 3/151 (1%)
Query: 111 EEKPQAQAVTEAPKPQKPESDYSEAHQKREQDQQAATATQQVISPPSAAGTNGPEKSGKV 170
EEK +A +A + +K + +A + ++ D+ A ++ AA E
Sbjct: 1287 EEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKA-EEAKKKADAAKKKAEEAKKAA 1345
Query: 171 DRPRKSTIAEKQSSRKANNNEEAKAASVEAKITATQKNKHLAEEVKSTSGARETVEKDKK 230
+ + A + A EA E K AEE K A++ E+DKK
Sbjct: 1346 EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKK 1405
Query: 231 VVDYDAAASAEAGKEAAGSLNERASKYRTED 261
D A A K+ A ++A + + D
Sbjct: 1406 KA--DELKKAAAAKKKADEAKKKAEEKKKAD 1434
Score = 32.4 bits (73), Expect = 0.38
Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 10/161 (6%)
Query: 111 EEKPQAQAVTEAPKPQKPESDYSEAHQKREQDQQAATATQQVISPPSAAGTNGPEKSGKV 170
E+ +A+AV +A + +K + +A ++R ++ ++ E++ K
Sbjct: 1221 EDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKA 1280
Query: 171 DRPRKSTIAEKQSSRKANNNEEAKAASVEAKITATQKN-----KHLAEEVKSTSGARETV 225
D +K+ EK+ + +A EE K A EAK A + K AEE K + A +
Sbjct: 1281 DELKKAE--EKKKADEAKKAEEKKKAD-EAKKKAEEAKKADEAKKKAEEAKKKADAAKKK 1337
Query: 226 EKDKKVVDYDAAASAEAGKEAAGSLNER--ASKYRTEDLKQ 264
++ K A A AEA + A + E+ A++ + E+ K+
Sbjct: 1338 AEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
Score = 30.9 bits (69), Expect = 1.2
Identities = 35/160 (21%), Positives = 76/160 (47%), Gaps = 4/160 (2%)
Query: 106 ADHQQEEKPQAQAVTEAPKPQKPESDYSEAHQKREQDQQAATATQQVISPPSAAGTNGPE 165
AD +++ +A+ EA K + ++A +K+ ++ + A + + +A E
Sbjct: 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE 1363
Query: 166 KSGKVDRPRKSTIAEKQSSRKANNNEEAKAASVEAKITATQKNKHLAEEVKSTSGARETV 225
+ + +K K+ + A E K + EAK A +++K A+E+K + A++
Sbjct: 1364 EKAEAAEKKKEE--AKKKADAAKKKAEEKKKADEAKKKA-EEDKKKADELKKAAAAKKKA 1420
Query: 226 EKDKKVVDYDAAASAEAGKEAAGSLNERASKYRTEDLKQA 265
++ KK + + + EA K+A + +K + E+ K+A
Sbjct: 1421 DEAKKKAE-EKKKADEAKKKAEEAKKADEAKKKAEEAKKA 1459
Score = 29.3 bits (65), Expect = 3.0
Identities = 21/100 (21%), Positives = 38/100 (38%)
Query: 165 EKSGKVDRPRKSTIAEKQSSRKANNNEEAKAASVEAKITATQKNKHLAEEVKSTSGARET 224
E+ K D +K K++ EEAK + AK A + K A +
Sbjct: 1299 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADE 1358
Query: 225 VEKDKKVVDYDAAASAEAGKEAAGSLNERASKYRTEDLKQ 264
E ++ + EA K+A + + K + ++ K+
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK 1398
Score = 27.8 bits (61), Expect = 9.1
Identities = 29/169 (17%), Positives = 67/169 (39%)
Query: 110 QEEKPQAQAVTEAPKPQKPESDYSEAHQKREQDQQAATATQQVISPPSAAGTNGPEKSGK 169
+E K +A +A + +K E + + Q ++++ + +++ E++ K
Sbjct: 1610 EEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK 1669
Query: 170 VDRPRKSTIAEKQSSRKANNNEEAKAASVEAKITATQKNKHLAEEVKSTSGARETVEKDK 229
+ +K K++ EA E A + K AEE K ++ E++K
Sbjct: 1670 AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENK 1729
Query: 230 KVVDYDAAASAEAGKEAAGSLNERASKYRTEDLKQALGGWVMELKQPRK 278
+ + E K+A + + K + LK+ E+++ ++
Sbjct: 1730 IKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKE 1778
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 34.6 bits (80), Expect = 0.072
Identities = 26/158 (16%), Positives = 50/158 (31%), Gaps = 7/158 (4%)
Query: 93 GKLFIKHPKIITPADHQQEEKPQAQAVTEAPKPQKPESDYSEAHQKREQDQQAATATQ-- 150
GK++I++P ++ P D Q EE+ +A+ V P + + +A
Sbjct: 839 GKVWIRYP-VVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEE 897
Query: 151 -QVISPPSAAGTNGPEKSGKVDRPRKSTIAEKQSSRKANNNEEAKAASVEAKITATQKNK 209
V++ P E + +Q ++ E +
Sbjct: 898 PVVVAEPQPEEVVVVE---TTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQD 954
Query: 210 HLAEEVKSTSGARETVEKDKKVVDYDAAASAEAGKEAA 247
A+ ++ A V + + V A AE E
Sbjct: 955 ETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVE 992
>gnl|CDD|206461 pfam14293, YWFCY, YWFCY protein. This family is found in bacteria,
and is approximately 60 amino acids in length. There is
a conserved YWFCY motif. It is often found in
association with pfam02534.
Length = 61
Score = 30.0 bits (68), Expect = 0.20
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 13/40 (32%)
Query: 259 TEDLKQALGGWVMELKQPRKIMNFT--VAILLVLV-VYIY 295
ED +AL KIM+F V+ILL+L+ Y Y
Sbjct: 2 QEDDLRAL----------AKIMDFMRAVSILLLLIHFYWY 31
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 32.9 bits (76), Expect = 0.22
Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 9/127 (7%)
Query: 103 ITPADHQQEEKPQAQAVTEAPKPQKPESDYSEAHQKREQDQQAATATQQVISPPSAAGTN 162
+ P P A A +AP S+ R+Q Q+A AT+ S P+AA
Sbjct: 391 VAPPQAPAVPPPPASAPQQAPAVP-LPETTSQLLAARQQLQRAQGATKAKKSEPAAASRA 449
Query: 163 GPEKSGKVDRPRKSTIAEKQSSRKANNNEEAKAASVEAKITATQKNKHLAEEVKSTSGAR 222
P S ++R +A + + A AK + K AT + E V + +
Sbjct: 450 RPVNSA-LER-----LASVRPAPSALEKAPAKKEAYRWK--ATNPVEVKKEPVATPKALK 501
Query: 223 ETVEKDK 229
+ +E +K
Sbjct: 502 KALEHEK 508
>gnl|CDD|188526 TIGR04011, poly_gGlu_PgsC, poly-gamma-glutamate biosynthesis
protein PgsC/CapC. Of four genes commonly found to be
involved in biosynthesis and export of
poly-gamma-glutamate, pgsB(capB) and pgsC(capC) are
found to be involved in the synthesis per se. Members of
this family are designated PgsC, covering both cases in
which the poly-gamma-glutamate is secreted and those in
which it is retained to form capsular material. PgsC
binds tightly to PgsB, which has been shown to have
poly-gamma-glutamate activity [Cell envelope, Other].
Length = 132
Score = 31.1 bits (71), Expect = 0.25
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 267 GGWV------MELKQPRKIM-NFTVAILLVLVVYIYAKNAIGYIGKSK 307
GG V + L QP I+ ++IL L+VY+ +K I Y G+ K
Sbjct: 20 GGLVVPGYLALFLDQPVLIIVTILISILTYLIVYVISKFTILY-GRRK 66
>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 31.5 bits (72), Expect = 0.63
Identities = 17/72 (23%), Positives = 28/72 (38%)
Query: 96 FIKHPKIITPADHQQEEKPQAQAVTEAPKPQKPESDYSEAHQKREQDQQAATATQQVISP 155
++H K +T Q + A A EA P P + + R + AA A + +
Sbjct: 87 LVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPA 146
Query: 156 PSAAGTNGPEKS 167
+AA K+
Sbjct: 147 DAAAAVADAVKA 158
>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional.
Length = 508
Score = 31.4 bits (71), Expect = 0.66
Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 25/157 (15%)
Query: 102 IITPAD-------HQQEEKPQAQAVTEAP-KPQKPESDYSEAHQKREQDQQAATATQQVI 153
I++P D H P+A+A+ AP + + + +A + ++ + AA A +
Sbjct: 161 IVSPNDAAPVDISHPALFVPKAEALAAAPARAETLAREAEDAARAADEAKTAAAAAAREA 220
Query: 154 SPPSAAGTNGPEKSGKVDRPRKSTIAEKQSSRK---ANNNEEAKAASVEAKITATQKNKH 210
+P A+ K++R + AE + + K A +EAKA + E + A Q+
Sbjct: 221 APLKAS-------LRKLERAKARADAELKRADKALAAAKTDEAKARAEERQQKAAQQAAE 273
Query: 211 LAEEVKSTSGARETVEKDKKVVDYDAAASAEAGKEAA 247
A ++ + E AAA+ EA K AA
Sbjct: 274 AATQLDTAKADAEAKRAA-------AAATKEAAKAAA 303
>gnl|CDD|225510 COG2962, RarD, Predicted permeases [General function prediction
only].
Length = 293
Score = 30.7 bits (70), Expect = 0.98
Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 11/46 (23%)
Query: 268 GWVMEL-KQPRKIMNFTVAILLVLV---VYIYAKN-------AIGY 302
+ +L KQP+ ++ + LL+ + ++I+A N ++GY
Sbjct: 60 RELKQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGY 105
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 30.6 bits (68), Expect = 1.4
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 5/111 (4%)
Query: 104 TPADHQQEEKPQAQAVTEAPKPQKPESDYSEAHQKREQDQQAATATQQVIS--PPSAAGT 161
T A+ + EE+PQ E PES E + Q QA T + IS P
Sbjct: 284 TVAETKAEEEPQPTQTVETKPTSAPESTVEENLPEINQPTQAVQPTSETISTTPVEPTDQ 343
Query: 162 NGPEKSGKVDRPRKSTIA---EKQSSRKANNNEEAKAASVEAKITATQKNK 209
P++ ++ K T E+ ++K + E E K Q N+
Sbjct: 344 LKPKEVDQIQEELKKTKEIEVEELPTKKNDLVEINFDDLEELKFELVQTNQ 394
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 30.2 bits (68), Expect = 1.5
Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 3/139 (2%)
Query: 109 QQEEKPQAQAVTEAPKPQKPESDYSEAHQKREQDQQAATATQQVISPPSAAGTNGPEKSG 168
E+ Q + A + + A Q E+ +QA A + + A EK
Sbjct: 85 AAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKA 144
Query: 169 KVDRPRKSTIAEKQSSRKANNNEEAKAASVEAKITATQKNKHLAEEVKSTSGARETVEKD 228
K + ++ AE+++ KA + KAA + K A K K A+ A+ E
Sbjct: 145 KEEAKKQ---AEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAA 201
Query: 229 KKVVDYDAAASAEAGKEAA 247
K +AAA AEA AA
Sbjct: 202 KAKAAAEAAAKAEAEAAAA 220
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 83
Score = 28.3 bits (64), Expect = 1.5
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 33 LIVNLPGFRKEQLKVQVTTSKKMRISGERPLGNNKWSS----FSKEFPISSNYDFNEISA 88
+ +++ GF+ E+LKV+V + K+ + G+ ++ F++ + + D + +++
Sbjct: 11 VTLDVKGFKPEELKVKV-SDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTS 69
Query: 89 KF-EGGKLFIKHPK 101
G L I+ PK
Sbjct: 70 SLSSDGVLTIEAPK 83
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 30.4 bits (69), Expect = 1.5
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 8/94 (8%)
Query: 171 DRPRKSTIAEKQSSRKANNNE----EAKAASVEAKITATQKNKHLAEEVKSTSGARETVE 226
P TI E + + E E + VE ++ + + ++ RE +E
Sbjct: 463 GSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLE 522
Query: 227 KDKKVVDYDAAASAEAGKEAAGSLNERASKYRTE 260
+ ++ + + E +E A L ERA++ E
Sbjct: 523 E---LIA-ERRETIEEKRERAEELRERAAELEAE 552
>gnl|CDD|238289 cd00523, archeal_HJR, Holliday junction resolvases (HJRs) are
endonucleases that specifically resolve Holliday
junction DNA intermediates during homologous
recombination. HJR's occur in archaea, bacteria, and in
the mitochondria of certain eukaryotes, however this CD
includes only the archeal HJR's. The bacterial and
archeal HJRs perform a similar function but differ in
both sequence and structure. Structural similarity does
however, exist between the archeal HJRs and type II
restriction endonucleases, such as EcoRV, BglII, and
Fok, and this similarity includes their active site
configurations.
Length = 123
Score = 28.9 bits (65), Expect = 1.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 202 ITATQKNKHLAEEVKSTSGARETVEKDK 229
I A +LA EVKST + ++K++
Sbjct: 39 IVAGNGGTYLAIEVKSTKKDKIYIKKEQ 66
>gnl|CDD|114645 pfam05934, MCLC, Mid-1-related chloride channel (MCLC). This
family consists of several mid-1-related chloride
channels. mid-1-related chloride channel (MCLC) proteins
function as a chloride channel when incorporated in the
planar lipid bilayer.
Length = 577
Score = 30.1 bits (67), Expect = 1.8
Identities = 17/70 (24%), Positives = 31/70 (44%)
Query: 104 TPADHQQEEKPQAQAVTEAPKPQKPESDYSEAHQKREQDQQAATATQQVISPPSAAGTNG 163
T + QE+ A+ + E+ ++ ++ EA +K + +AA + Q + A G G
Sbjct: 506 TGEELSQEDHQIAKPIKESGNDERGNTEGPEAAEKAQLKSEAAGSPDQGSTYSPARGVAG 565
Query: 164 PEKSGKVDRP 173
P V P
Sbjct: 566 PRGEDPVSEP 575
>gnl|CDD|129913 TIGR00833, actII, Transport protein. The
Resistance-Nodulation-Cell Division (RND) Superfamily-
MmpL sub family (TC 2.A.6.5)Characterized members of the
RND superfamily all probably catalyze substrate efflux
via an H+ antiport mechanism. These proteins are found
ubiquitously in bacteria, archaea and eukaryotes. This
sub-family includes the S. coelicolor ActII3 protein,
which may play a role in drug resistance, and the M.
tuberculosis MmpL7 protein, which catalyzes export of an
outer membrane lipid, phthiocerol dimycocerosate
[Transport and binding proteins, Unknown substrate].
Length = 910
Score = 29.9 bits (67), Expect = 1.9
Identities = 30/179 (16%), Positives = 60/179 (33%), Gaps = 26/179 (14%)
Query: 143 QQAATATQQVISPPSAAGTNGPEKSGK--VDRPRKSTIAEK-QSSRKANNNEEAKAASVE 199
+ + Q P AA + ++ + R I +S+ + + + A ++
Sbjct: 25 EDVSYFRLQAELPGGAASSIAVKEMSAAFQEAIRDPKIILVLESNERLGDKDYATYDALI 84
Query: 200 AKITATQKNKHLAEEVKSTSGARETVEKDKKVVDYDAA------ASAEAGKEAAGSLNER 253
AK+ A + + A E + D D A A + KEA ++N
Sbjct: 85 AKLRADIMHVISVVDFWGPPEAAEGLRSD----DGKATIIIVNLAGEKGQKEAQEAINAV 140
Query: 254 ASKYRTEDLKQALGGWV------------MELKQPRKIMNFTVAILLVLVVYIYAKNAI 300
+ L V K +I T I+L++++ +Y ++ I
Sbjct: 141 RRIVEQTNAPDGLTVHVTGPLATIADILESGDKDMNRITATTGIIVLIILLLVY-RSPI 198
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 29.5 bits (66), Expect = 2.4
Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 4/161 (2%)
Query: 109 QQEEKPQAQAVTEAPKPQKPESDYSEAHQKREQDQQAATATQQVISPPSAAGTNGPEKSG 168
EE QA + Q + Q+++ ++ A + A E+
Sbjct: 88 VAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKK 147
Query: 169 KVDRPRKSTIAE----KQSSRKANNNEEAKAASVEAKITATQKNKHLAEEVKSTSGARET 224
K + + AE K ++ EEA A+ EAK A E ++ + A +
Sbjct: 148 KAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKA 207
Query: 225 VEKDKKVVDYDAAASAEAGKEAAGSLNERASKYRTEDLKQA 265
+ + + A A A ++AA + A+K + + A
Sbjct: 208 KAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAA 248
>gnl|CDD|113452 pfam04684, BAF1_ABF1, BAF1 / ABF1 chromatin reorganising factor.
ABF1 is a sequence-specific DNA binding protein involved
in transcription activation, gene silencing and
initiation of DNA replication. ABF1 is known to remodel
chromatin, and it is proposed that it mediates its
effects on transcription and gene expression by
modifying local chromatin architecture. These functions
require a conserved stretch of 20 amino acids in the
C-terminal region of ABF1 (amino acids 639 to 662 S.
cerevisiae). The N-terminal two thirds of the protein
are necessary for DNA binding, and the N-terminus (amino
acids 9 to 91 in S. cerevisiae) is thought to contain a
novel zinc-finger motif which may stabilise the protein
structure.
Length = 508
Score = 29.3 bits (65), Expect = 3.3
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 18/125 (14%)
Query: 103 ITPADHQQEEKPQAQAVTEAPKPQKPES---DYSEAHQKREQDQQAATATQQVISPPSAA 159
I+ ADH Q + ++ + Q PE D+ HQ ++QD Q QQ +
Sbjct: 286 ISGADHHQHQHHHHPSIPAHHQHQLPEGHQHDHQHHHQHQQQDLQHQEQHQQHV------ 339
Query: 160 GTNGPEKSGKVDRPRKSTIAEKQSSRKAN---NNEEAKAASVEAKITATQ-KNKHLAEEV 215
+ V + R +I++ + N NN AA+ A A Q ++ H +E++
Sbjct: 340 -----DNDHHVYQDRIGSISDNDDAAIHNLDDNNVRVAAAAAAAAAAALQSRDNHDSEDL 394
Query: 216 KSTSG 220
K
Sbjct: 395 KLNCE 399
>gnl|CDD|216751 pfam01870, Hjc, Archaeal holliday junction resolvase (hjc). This
family of archaebacterial proteins are holliday junction
resolvases (hjc gene). The Holliday junction is an
essential intermediate of homologous recombination. This
protein is the archaeal equivalent of RuvC but is not
sequence similar.
Length = 93
Score = 27.3 bits (61), Expect = 3.9
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 202 ITATQKNKHLAEEVKSTSGARETVEKDK 229
I A +L EVKS + ++K++
Sbjct: 33 IIAGNGGVYLVIEVKSRKKDKIYLKKEQ 60
>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated.
Length = 423
Score = 28.5 bits (64), Expect = 4.2
Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 9/104 (8%)
Query: 118 AVTEAPKPQKPESDYSEAHQKREQDQQAATATQQVISPPSAAGTNGPEKSGKVDRPRKST 177
VT A P Q REQ Q A +AT + P AA + K +
Sbjct: 191 EVTTAGDLLPPG-------QAREQAQGAKSATAAPATVPQAAPLP-QAQPKKAATEEEL- 241
Query: 178 IAEKQSSRKANNNEEAKAASVEAKITATQKNKHLAEEVKSTSGA 221
IA+ + + A A+ + Q+ + +
Sbjct: 242 IADAKKAATGEPAANAAKAAKPEPMPDDQQKEAEQLQAAIAQAI 285
Score = 27.7 bits (62), Expect = 9.5
Identities = 12/96 (12%), Positives = 24/96 (25%), Gaps = 11/96 (11%)
Query: 106 ADHQQEEKPQAQAVTEAPKPQKPESDYSEAHQKREQDQQAATATQQVISPPSAAGTNGPE 165
+ A A P ++AAT + + AA
Sbjct: 207 QAQGAKSATAAPATVPQAAPLPQAQP-----------KKAATEEELIADAKKAATGEPAA 255
Query: 166 KSGKVDRPRKSTIAEKQSSRKANNNEEAKAASVEAK 201
+ K +P +++ + + V K
Sbjct: 256 NAAKAAKPEPMPDDQQKEAEQLQAAIAQAIGGVAGK 291
>gnl|CDD|227875 COG5588, COG5588, Uncharacterized conserved protein [Function
unknown].
Length = 207
Score = 27.8 bits (62), Expect = 5.6
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 240 AEAGKEAAGSLNERASKYRTEDLKQALGG 268
E AA ++ERAS + E L + G
Sbjct: 70 HEGNWTAAIYIDERASDAQREALLKIFTG 98
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 28.2 bits (63), Expect = 5.6
Identities = 39/152 (25%), Positives = 56/152 (36%), Gaps = 8/152 (5%)
Query: 106 ADHQQEEKPQAQAVTEAPKPQKPESDYSEAHQKREQDQQAATATQQVISPPSAAGTNGPE 165
Q EE Q QA + Q + + QK++ ++ A A + AA
Sbjct: 85 EQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAA 144
Query: 166 KSGKVDRPRKSTIAEKQSSRKANNNEEAKA-ASVEAKITATQKNKHLAEEVKSTSGARET 224
K + K A + + EAK A EA A + K AE + A E
Sbjct: 145 AKAKAEAEAKRAAAAAKKAA-----AEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAE- 198
Query: 225 VEKDKKVVDYDAAASAEAGKEAAGSLNERASK 256
K K + A+AEA K+AA A+K
Sbjct: 199 -AKKKAEAEAKKKAAAEAKKKAAAEAKAAAAK 229
Score = 27.8 bits (62), Expect = 7.5
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 5/144 (3%)
Query: 109 QQEEKPQAQAVTEAPKPQKPESDYSEAHQKREQDQQAA--TATQQVISPPSAAGTNGPEK 166
QQ E+ Q + E + ++ E + A ++++Q ++AA A +Q + +AA K
Sbjct: 87 QQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAK 146
Query: 167 SGKVDRPRKSTIAEKQSSRKANNNEEAKA---ASVEAKITATQKNKHLAEEVKSTSGARE 223
+ +++ A K+++ +A EA+A A+ EAK A + A E
Sbjct: 147 AKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAE 206
Query: 224 TVEKDKKVVDYDAAASAEAGKEAA 247
+K AAA A+A A
Sbjct: 207 AKKKAAAEAKKKAAAEAKAAAAKA 230
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 28.4 bits (63), Expect = 5.7
Identities = 11/79 (13%), Positives = 19/79 (24%), Gaps = 4/79 (5%)
Query: 106 ADHQQEEKPQAQAVTEAPKPQKPESDYSEAHQKREQDQQAATATQQVISPPSAAGTNGPE 165
E+ Q P + D A E+ A+ + P P
Sbjct: 366 TSEADIEREQPGD-LAGQAPAAHQVDAEAASAAPEEPAALASEAHDE-TEPEVPEKAAPI 423
Query: 166 KSGKVDRPRKSTIAEKQSS 184
+P + +A
Sbjct: 424 PDP--AKPDELAVAGPGDD 440
Score = 28.0 bits (62), Expect = 7.7
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 109 QQEEKPQAQAVTEAPKPQKPESDYSEAH---QKREQDQQAATATQQVISPPSAAGT---- 161
Q Q A + P++P + SEAH + ++ A + AG
Sbjct: 382 QAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDP 441
Query: 162 NGPEKSGKVDR 172
P+ + D
Sbjct: 442 AEPDGIRRQDD 452
>gnl|CDD|191696 pfam07168, Ureide_permease, Ureide permease. Heterocyclic nitrogen
compounds may serve as nitrogen sources or nitrogen
transport compounds in plants that are not able to fix
nitrogen. This family represents ureide permease, a
transporter of a wide spectrum of oxo derivatives of
heterocyclic nitrogen compounds, including allantoin,
uric acid and xanthine; it has 10 putative transmembrane
domains with a large cytosolic central domain containing
a 'Walker A' motif. Ureide permease is likely to
transport other purine degradation products when
nitrogen sources are low. Transport is dependent on
glucose and a proton gradient. The family is found in
bacteria, plants and yeast.
Length = 336
Score = 27.9 bits (62), Expect = 6.4
Identities = 16/79 (20%), Positives = 35/79 (44%)
Query: 218 TSGARETVEKDKKVVDYDAAASAEAGKEAAGSLNERASKYRTEDLKQALGGWVMELKQPR 277
+S A + EK +Y + S + + + +E +D K +++EL++ R
Sbjct: 149 SSNAADNKEKLNAFENYQSEFSISSLELMSRMNSEDLENGEADDAKAGTAEFLVELEKRR 208
Query: 278 KIMNFTVAILLVLVVYIYA 296
I F + + L + ++A
Sbjct: 209 AIKVFGKSTWIGLGITLFA 227
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 28.0 bits (62), Expect = 7.2
Identities = 29/170 (17%), Positives = 53/170 (31%), Gaps = 4/170 (2%)
Query: 82 DFNEISAKFEGGKLFIKHPKIITPADHQQ-EEKPQAQAVTEAPKPQKPESDYSEAHQKRE 140
D + K + P + D + EE + + EA + S+ + A +
Sbjct: 857 DLAVLERKLQNPSFVQNAPPAVVEKDRARAEELREKRGKLEAHRAMLSGSEANSARRDTM 916
Query: 141 QDQQAATATQQVISPPSAAGTNGPEKSGKVDRPRKSTIAEKQSSRKANNNEEAKAASVEA 200
+ Q TQ + + + A +Q++ + E A +V
Sbjct: 917 EIQNEQKPTQDGPAAEAQPAQENTVVESAEKAVAAVSEAAQQAATAVASGIEKVAEAVRK 976
Query: 201 KITATQKN---KHLAEEVKSTSGARETVEKDKKVVDYDAAASAEAGKEAA 247
+ + K A + K A KK AAA + K+A
Sbjct: 977 TVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAP 1026
Score = 28.0 bits (62), Expect = 7.7
Identities = 26/154 (16%), Positives = 53/154 (34%), Gaps = 8/154 (5%)
Query: 82 DFNEISAKFEGGKLFIKHPKIITPADHQQEEKPQAQAVTEAPKPQ---KPESDYSEAHQK 138
+ E K E + + + + E + + + + P + E+ E+ +K
Sbjct: 888 ELREKRGKLEAHRAMLSGSEANSARRDTMEIQNEQKPTQDGPAAEAQPAQENTVVESAEK 947
Query: 139 R-----EQDQQAATATQQVISPPSAAGTNGPEKSGKVDRPRKSTIAEKQSSRKANNNEEA 193
E QQAATA I + A +S K ++ + +K + + A
Sbjct: 948 AVAAVSEAAQQAATAVASGIEKVAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAA 1007
Query: 194 KAASVEAKITATQKNKHLAEEVKSTSGARETVEK 227
K A+ + + K + + A + K
Sbjct: 1008 KKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAK 1041
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 28.0 bits (62), Expect = 7.6
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 17/100 (17%)
Query: 105 PADHQQEEKPQAQAVTEAPKPQKPESDYSEAHQKREQDQQAATATQQVISPPSAAGTNGP 164
P+ +EE PQ +AV P+P P + Y +D + T SP ++ P
Sbjct: 352 PSPPIEEEPPQPKAV--VPRPLSPYTAY--------EDLKPPT------SPIPTPPSSSP 395
Query: 165 EKSGKVDRPRK-STIAEKQSSRKANNNEEAKAASVEAKIT 203
S VD K + S A+N E + A VEAK T
Sbjct: 396 ASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKT 435
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. The
integral membrane proteins from the MATE family are
involved in exporting metabolites across the cell
membrane and are responsible for multidrug resistance
(MDR) in many bacteria and animals. MATE has also been
identified as a large multigene family in plants, where
the proteins are linked to disease resistance. A number
of family members are involved in the synthesis of
peptidoglycan components in bacteria.
Length = 435
Score = 27.9 bits (63), Expect = 8.0
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 279 IMNFTVAILLVLVVYIYAKNAIGYIG 304
+N + IL L++ ++AK IG+
Sbjct: 89 QLNLLLGILYGLLLLLFAKPLIGFFN 114
>gnl|CDD|188579 TIGR04064, rSAM_nif11, nif11-like peptide radical SAM maturase.
Members of this family are radical SAM enzymes that
occur co-clustered with nif11-related ribosomal natural
product (RNP) precursors described by TIGRFAMs model
TIGR03798. Homology within the bacteriocin family
reflects largely constraints on the leader peptide, tied
to processes such as cleavage and export, and members
associate with various families of maturation enzyme.
The gene symbol assigned is nlpM, for Nif11-class Leader
Peptide family Radical SAM Maturase [Cellular processes,
Toxin production and resistance].
Length = 458
Score = 27.5 bits (61), Expect = 9.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 229 KKVVDYDAAASAEAGKEAAGSLNERAS 255
K+VV+Y E+GK A S+ S
Sbjct: 147 KRVVEYAKQRGEESGKTFAFSITTNGS 173
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.306 0.123 0.333
Gapped
Lambda K H
0.267 0.0712 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,958,904
Number of extensions: 1377977
Number of successful extensions: 1556
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1412
Number of HSP's successfully gapped: 147
Length of query: 308
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 211
Effective length of database: 6,635,264
Effective search space: 1400040704
Effective search space used: 1400040704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (26.5 bits)