RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021718
(308 letters)
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 48.8 bits (117), Expect = 1e-07
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 15 YEKFEPSTEWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPL-GNNKW----- 68
YE P + E + ++ +L GF KE++K +V+ ++ I ER +
Sbjct: 20 YELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQR 79
Query: 69 -SSFSKEFPISSNYDFNE-ISAKFEGGKLFIKHPK 101
K + N + IS K+E G L I+ P
Sbjct: 80 PKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPI 114
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 49.2 bits (118), Expect = 1e-07
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 18/113 (15%)
Query: 18 FEPSTEWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPL----GNNKW----- 68
+W E +LPG +KE++KV+V + +SGER N+KW
Sbjct: 42 ANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVER 101
Query: 69 --SSFSKEFPISSNYDFNEISAKFEGGKLFIKHPKIITPADHQQEEKPQAQAV 119
F + F + + E+ A E G L + PK + +KP+ +A+
Sbjct: 102 SSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPK-------AEVKKPEVKAI 147
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 46.3 bits (111), Expect = 5e-07
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 12/96 (12%)
Query: 17 KFEPSTEWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPL----GNNKW---- 68
++ P + E L +LPG Q++VQ+ + I GER ++
Sbjct: 2 QWVPRVDIKEEVNHFVLYADLPGIDPSQIEVQM-DKGILSIRGERKSESSTETERFSRIE 60
Query: 69 ---SSFSKEFPISSNYDFNEISAKFEGGKLFIKHPK 101
SF + F + + D + I+A G L I+ PK
Sbjct: 61 RRYGSFHRRFALPDSADADGITAAGRNGVLEIRIPK 96
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 46.1 bits (109), Expect = 3e-06
Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 17/111 (15%)
Query: 27 EDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGNNKWS----SFSKEFPISSNYD 82
+D F ++ +++ F E+LKV+V + + G+ ++ F +++ I ++ D
Sbjct: 72 KDRF-SVNLDVKHFSPEELKVKV-LGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVD 129
Query: 83 FNEISAKF-EGGKLFIKHPKIITPADH-----QQEEKPQAQAVTEAPKPQK 127
I++ G L + P+ +EEKP A P+K
Sbjct: 130 PLTITSSLSSDGVLTVNGPRKQVSGPERTIPITREEKPAVTA-----APKK 175
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 43.7 bits (103), Expect = 5e-06
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 27 EDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGNNKWSS----FSKEFPISSNYD 82
D+F + +++ F E L V+V + I G+ + F + + + SN D
Sbjct: 11 RDKF-VIFLDVKHFSPEDLTVKV-QEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVD 68
Query: 83 FNEISAKF-EGGKLFIKHPKIITPADHQQEEKP 114
+ +S G L PKI + D E+
Sbjct: 69 QSALSCSLSADGMLTFSGPKIPSGVDAGHSERA 101
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 42.1 bits (99), Expect = 1e-05
Identities = 11/94 (11%), Positives = 32/94 (34%), Gaps = 7/94 (7%)
Query: 27 EDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGNNKWS----SFSKEFPISSNYD 82
F ++++++ F E++ V+V + + ++ F + + + D
Sbjct: 10 PGYF-SVLLDVKHFSPEEISVKV-VGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVD 67
Query: 83 FNEISAKF-EGGKLFIKHPKIITPADHQQEEKPQ 115
+++ G L I+ A +
Sbjct: 68 PAAVTSALSPEGVLSIQATPASAQASLPSPPAAK 101
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 43.6 bits (103), Expect = 2e-05
Identities = 21/107 (19%), Positives = 32/107 (29%), Gaps = 13/107 (12%)
Query: 7 AAAQTNREYEKFEPSTEWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGNN 66
A A + K D+ +I LPG KE + + + I +R
Sbjct: 44 AVAAGIQISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAV-GDTLEIRAKRSPLMI 102
Query: 67 K------------WSSFSKEFPISSNYDFNEISAKFEGGKLFIKHPK 101
+ + + SAKFE G L + PK
Sbjct: 103 TESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPK 149
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 40.9 bits (96), Expect = 4e-05
Identities = 16/80 (20%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 27 EDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGNNKWS----SFSKEFPISSNYD 82
+D F ++ +++ F E+LKV+V + + G+ ++ F +++ I ++ D
Sbjct: 5 KDRF-SVNLDVKHFSPEELKVKV-LGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVD 62
Query: 83 FNEISAKF-EGGKLFIKHPK 101
I++ G L + P+
Sbjct: 63 PLTITSSMSSDGVLTVNGPR 82
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 42.1 bits (98), Expect = 1e-04
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 8/88 (9%)
Query: 22 TEWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISG------ERPLGNNKWS-SFSKE 74
T + + P F + +KV K+ + G + ++ F K
Sbjct: 227 TAEDGSKKIHLELKVDPHFAPKDVKVWAK-GNKVYVHGVTGKEEKTENASHSEHREFYKA 285
Query: 75 FPISSNYDFNEISAKFEGGKLFIKHPKI 102
F D ++ A+ G + ++ P
Sbjct: 286 FVTPEVVDASKTQAEIVDGLMVVEAPLF 313
Score = 34.0 bits (77), Expect = 0.043
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 18 FEPSTEWAREDEFDTLIVNL--PGFRKEQLKVQVTTSKKMRISGERPLGNNKWS---SFS 72
F +D V F+ E++ ++ K+ + ++ + + S
Sbjct: 99 FLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKA-DKNKLVVRAQKSVACGDAAMSESVG 157
Query: 73 KEFPISSNYDFNEISAKF-EGGKLFI 97
+ P+ + D N I A L I
Sbjct: 158 RSIPLPPSVDRNHIQATITTDDVLVI 183
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 39.2 bits (92), Expect = 1e-04
Identities = 12/80 (15%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 27 EDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGNNKWS----SFSKEFPISSNYD 82
D + + +++ F ++L V+ + I+G+ ++ F++++ + D
Sbjct: 6 ADRW-RVSLDVNHFAPDELTVKT-KDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVD 63
Query: 83 FNEISAKF-EGGKLFIKHPK 101
++S+ G L ++ P
Sbjct: 64 PTQVSSSLSPEGTLTVEAPM 83
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 34.8 bits (80), Expect = 0.035
Identities = 33/187 (17%), Positives = 62/187 (33%), Gaps = 7/187 (3%)
Query: 96 FIKHPKIITPADHQQEEKPQAQAVTEAPKPQKP-ESDYSEAHQKREQDQQAATATQQVIS 154
F + + Q E+P + + +A +P K E E Q + + A V
Sbjct: 15 FGQKEQTPEKETEVQNEQPVVEEIVQAQEPVKASEQAVEEQPQAHTEAEAETFAADVVEV 74
Query: 155 PPSAAGTNGPEKSGKVDRPRKSTIAEKQSSRKANNNEEAKAASVEAKITATQKNKHLAEE 214
A + + +V + + E E V A+ + ++ + AE
Sbjct: 75 TEQVAESEKAQPEAEVVAQPEPVVEETPEPVAIEREELPLPEDVNAEAVSPEEWQAEAET 134
Query: 215 VKSTSGARETVEKDKKVVDYDAAASAEAGKEAAGSLNERASKYRTEDL------KQALGG 268
V+ A E K++ + A A E A + A + + + K G
Sbjct: 135 VEIVEAAEEEAAKEEITDEELETALAAEAAEEAVMVVPPAEEEQPVEEIAQEQEKPTKEG 194
Query: 269 WVMELKQ 275
+ LK+
Sbjct: 195 FFARLKR 201
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.040
Identities = 40/321 (12%), Positives = 85/321 (26%), Gaps = 98/321 (30%)
Query: 31 DTLIVNLPGFRK-------EQLKVQVTTSKKM--------RISGERPL-------GNNKW 68
D L V F + + + + +++ +SG L
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 69 SSFSKEFPISSNYDF--NEISAK------------------FEGGKLFIKH-----PKII 103
F +E + NY F + I + + ++F K+ +
Sbjct: 80 QKFVEEV-LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 104 TPADHQQEEKPQ----------------AQAVTEAPKPQKPESD---------YSEAHQK 138
E +P A V + K Q +
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 139 REQDQQAATATQQVISPPSAAGTNGPEKSGKVDRPRKSTIAEKQSSRKA-------NNNE 191
E Q+ + S +N + + + + + + N +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI-QAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 192 EAKAASVEAKITATQKNKHLAEEVKSTSGARETVEKDKKVVDYDAAASAEAGKEAAGSLN 251
A ++ KI T + K + + + + + +++ + D E L
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD---------EVKSLL- 307
Query: 252 ERASKY---RTEDL-KQALGG 268
KY R +DL ++ L
Sbjct: 308 ---LKYLDCRPQDLPREVLTT 325
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.34
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
Query: 180 EKQSSRKANNN------EEAKAASVEAKI 202
EKQ+ +K + + A A +++A +
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography,
heme, electron transport, oxidoreductase; HET: SRM;
2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1
d.134.1.1 d.134.1.1
Length = 608
Score = 31.6 bits (72), Expect = 0.37
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 6/96 (6%)
Query: 107 DHQQEEKPQAQAVTEAPKPQKPESDYSEAHQKREQDQQAATATQQVISPPSAAGTNGPEK 166
H P+ + E K E + ++ D A Q+ +SP + P
Sbjct: 6 HHSSGLVPRGSGMKETA-AAKFERQHMDSPDLGTDDDDKAMGCQKAVSPAAETAAVSPSV 64
Query: 167 SGKVDRPRKST-----IAEKQSSRKANNNEEAKAAS 197
PR + +++ N E+ K
Sbjct: 65 DAARLEPRVEERDGFWVLKEEFRSGINPAEKVKIEK 100
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.65
Identities = 39/245 (15%), Positives = 76/245 (31%), Gaps = 79/245 (32%)
Query: 128 PESDYSEAHQKREQ---DQQAATATQQVISPPSA------------AGTNGPEKSGKVDR 172
P + + A Q +EQ T P+ + P K G+ D+
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ 82
Query: 173 PRKSTIAEKQSSRKANNNEEAKAASVEAKITATQKNKHLAEEVKSTSGARETVEK-DKKV 231
+ E ++ N+ A AA + + T E +K+ AR ++ K
Sbjct: 83 VLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK--ELIKNYITARIMAKRPFDKK 140
Query: 232 VD---YDAAASAEA-------G--------KE------------------AAGSLNE--- 252
+ + A A G +E +A +L+E
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 253 ---RASKYRTE--DLKQALGGWVMELKQPRKI--MNFTVAI--------LLVLVVYIYAK 297
A K T+ ++ + W L+ P ++ ++I ++ L Y+
Sbjct: 201 TTLDAEKVFTQGLNILE----W---LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 298 NAIGY 302
+G+
Sbjct: 254 KLLGF 258
Score = 28.5 bits (63), Expect = 4.2
Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 23/141 (16%)
Query: 7 AAAQTNREYEKF--EPSTEWAREDEFDT---LIVNLPGFRKEQLKVQVTTSKKMRISGER 61
A+Q ++ K EP+ +A +DE T L+ G+ ++ ++
Sbjct: 29 IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS-------KVGQFD 81
Query: 62 PLGNNKWSSFSKEFPISSNYDFNEISAKFEG--GKLFIKHPKIITPADHQQEEKPQAQAV 119
+ N + F + + N D + ++AK +K ++I A+ +
Sbjct: 82 QVLNLCLTEFENCY-LEGN-DIHALAAKLLQENDTTLVKTKELIKNYI-------TARIM 132
Query: 120 TEAPKPQKPESDYSEAHQKRE 140
+ P +K S A +
Sbjct: 133 AKRPFDKKSNSALFRAVGEGN 153
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 28.9 bits (64), Expect = 2.7
Identities = 18/140 (12%), Positives = 52/140 (37%), Gaps = 12/140 (8%)
Query: 94 KLFIKHPKIITPADHQQEEKPQAQAVTEAPKPQKPESDYSEAHQKREQDQQAATATQQVI 153
+ I++ + D Q+ + + E + ++ +QA
Sbjct: 508 EFGIRNGSRLQADDFLQDYTLLINILHSEDLGKDVEFEVVGDAPEKVGPKQAE------- 560
Query: 154 SPPSAAGTNGPEKSGKVDRPRKSTIAEKQSSRKANNNEEAKAASVEAKITATQKNKHLAE 213
+ + TNG + + ++ A++Q +++E +++ + K +
Sbjct: 561 -DAAKSITNGSDDGAQ----PSTSTAQEQDDVLIVDSDEEDSSNNADVSEEERSRKRKLD 615
Query: 214 EVKSTSGARETVEKDKKVVD 233
E ++ S R +E+ +++ D
Sbjct: 616 EKENLSAKRSRIEQKEELDD 635
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell
WALL, antibiotic resistance, membrane, peptidog
synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium}
SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Length = 343
Score = 26.8 bits (60), Expect = 9.7
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 63 LGNNKWSSFSKEFPISSNYDFNEISAKFEGGKLFIKHPKIITPAD--HQQEEKPQAQAV 119
LGN+ + I Y I + E + ++ I PAD ++ + Q
Sbjct: 220 LGNSAALVVGEVDQIRLQYGIFRIHQEVE-PEKGSENAVITVPADLSAEERGRIQETVK 277
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.306 0.123 0.333
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,334,783
Number of extensions: 247495
Number of successful extensions: 328
Number of sequences better than 10.0: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 32
Length of query: 308
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 215
Effective length of database: 4,105,140
Effective search space: 882605100
Effective search space used: 882605100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (26.5 bits)