RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 021718
         (308 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 53.2 bits (127), Expect = 2e-09
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 18/113 (15%)

Query: 18  FEPSTEWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGER-----------PLGNN 66
                +W    E      +LPG +KE++KV+V     + +SGER                
Sbjct: 41  ANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVER 100

Query: 67  KWSSFSKEFPISSNYDFNEISAKFEGGKLFIKHPKIITPADHQQEEKPQAQAV 119
               F + F +  +    E+ A  E G L +  PK        + +KP+ +A+
Sbjct: 101 SSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA-------EVKKPEVKAI 146


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 16/94 (17%), Positives = 25/94 (26%), Gaps = 11/94 (11%)

Query: 20  PSTEWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKM-----------RISGERPLGNNKW 68
                   D+   +I  LPG  KE + +                              + 
Sbjct: 11  MPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEE 70

Query: 69  SSFSKEFPISSNYDFNEISAKFEGGKLFIKHPKI 102
               +   + +       SAKFE G L +  PK 
Sbjct: 71  EEIYRTIKLPATVKEENASAKFENGVLSVILPKA 104


>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase
           subunit I {Thermus thermophilus [TaxId: 274]}
          Length = 549

 Score = 28.4 bits (63), Expect = 1.3
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 276 PRKIMNFTVAILLVLVVYIY 295
            R    F VA +LV++ Y  
Sbjct: 512 DRIGFWFAVAAILVVLAYGP 531


>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog,
          gst1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 26.4 bits (58), Expect = 1.6
 Identities = 9/76 (11%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 23 EWAREDEFDTLIVNLPGFRKEQLKVQVTTSKKMRISGERPLGNNKWSSFSKEFPISSNYD 82
          +W + +    + + +   +K  + V+ +  +   +S    L + +   ++ +  +     
Sbjct: 6  DWYQTESQVVITLMIKNVQKNDVNVEFSEKE---LSALVKLPSGED--YNLKLELLHPII 60

Query: 83 FNEISAKFEGGKLFIK 98
            + + K    K+ IK
Sbjct: 61 PEQSTFKVLSTKIEIK 76


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.306    0.123    0.333 

Gapped
Lambda     K      H
   0.267   0.0561    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,015,558
Number of extensions: 43558
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 9
Length of query: 308
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 223
Effective length of database: 1,240,546
Effective search space: 276641758
Effective search space used: 276641758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (24.6 bits)