Query 021719
Match_columns 308
No_of_seqs 316 out of 2196
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 05:08:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.9 1.2E-24 2.6E-29 182.0 10.9 226 7-236 94-352 (419)
2 KOG4341 F-box protein containi 99.9 4.6E-24 9.9E-29 185.6 7.6 205 13-236 74-308 (483)
3 KOG4341 F-box protein containi 99.6 1.3E-16 2.9E-21 139.4 1.4 205 25-238 176-388 (483)
4 PF12937 F-box-like: F-box-lik 99.4 1E-13 2.2E-18 86.8 2.4 46 11-57 1-46 (47)
5 KOG1947 Leucine rich repeat pr 99.2 1.2E-10 2.5E-15 109.3 10.0 135 95-229 187-328 (482)
6 KOG1947 Leucine rich repeat pr 99.2 1.2E-10 2.6E-15 109.1 10.0 149 108-267 174-329 (482)
7 KOG2120 SCF ubiquitin ligase, 99.0 5.9E-10 1.3E-14 94.4 6.0 140 95-236 233-377 (419)
8 cd00116 LRR_RI Leucine-rich re 98.9 3.7E-08 7.9E-13 87.5 15.9 138 96-235 108-263 (319)
9 cd00116 LRR_RI Leucine-rich re 98.9 4.9E-08 1.1E-12 86.6 14.2 137 95-233 80-232 (319)
10 smart00256 FBOX A Receptor for 98.8 4.5E-09 9.8E-14 63.5 3.7 40 14-54 1-40 (41)
11 PF00646 F-box: F-box domain; 98.8 9.5E-10 2.1E-14 69.0 -0.2 43 10-53 2-44 (48)
12 KOG3665 ZYG-1-like serine/thre 98.5 2.5E-07 5.5E-12 89.7 8.4 142 85-231 110-259 (699)
13 KOG3207 Beta-tubulin folding c 98.4 1.3E-07 2.8E-12 84.2 2.2 119 116-236 140-260 (505)
14 KOG1909 Ran GTPase-activating 98.4 1.6E-06 3.4E-11 75.3 8.1 139 95-234 156-310 (382)
15 KOG1909 Ran GTPase-activating 98.3 5.9E-06 1.3E-10 71.8 10.8 142 96-238 92-257 (382)
16 KOG3207 Beta-tubulin folding c 98.1 2.7E-06 5.8E-11 76.0 4.5 114 120-237 119-237 (505)
17 PF14580 LRR_9: Leucine-rich r 98.1 4.4E-07 9.6E-12 73.0 -0.4 107 120-232 40-150 (175)
18 PF14580 LRR_9: Leucine-rich r 98.1 9.2E-07 2E-11 71.2 0.6 130 121-267 18-148 (175)
19 KOG3665 ZYG-1-like serine/thre 98.0 1.5E-05 3.3E-10 77.5 6.7 111 122-236 122-234 (699)
20 KOG3864 Uncharacterized conser 97.7 4.4E-05 9.6E-10 61.7 4.2 85 150-236 103-190 (221)
21 KOG2997 F-box protein FBX9 [Ge 97.7 1.8E-05 3.8E-10 67.8 1.9 50 10-60 106-160 (366)
22 KOG0618 Serine/threonine phosp 97.6 2.8E-05 6.1E-10 75.5 2.7 114 108-234 370-488 (1081)
23 KOG4194 Membrane glycoprotein 97.6 1.2E-05 2.6E-10 74.5 0.3 110 120-237 315-431 (873)
24 PLN00113 leucine-rich repeat r 97.6 7.2E-05 1.6E-09 76.6 5.7 88 144-234 160-248 (968)
25 PLN00113 leucine-rich repeat r 97.6 9.1E-05 2E-09 75.9 5.3 61 120-183 162-222 (968)
26 KOG2123 Uncharacterized conser 97.2 0.00013 2.8E-09 62.0 0.8 76 123-205 20-96 (388)
27 KOG2982 Uncharacterized conser 97.2 0.00025 5.3E-09 60.9 2.4 92 140-231 63-155 (418)
28 COG5238 RNA1 Ran GTPase-activa 97.1 0.026 5.6E-07 48.2 14.1 146 94-239 90-259 (388)
29 KOG2982 Uncharacterized conser 97.1 0.00073 1.6E-08 58.1 4.5 105 102-207 51-156 (418)
30 KOG3864 Uncharacterized conser 97.1 0.00064 1.4E-08 55.1 3.9 61 121-182 124-185 (221)
31 PLN03210 Resistant to P. syrin 97.0 0.00054 1.2E-08 71.4 3.8 59 121-183 777-835 (1153)
32 KOG0281 Beta-TrCP (transducin 97.0 0.00031 6.6E-09 61.0 1.6 45 12-57 76-124 (499)
33 PLN03215 ascorbic acid mannose 96.9 0.0008 1.7E-08 60.3 3.6 38 9-47 2-40 (373)
34 PLN03210 Resistant to P. syrin 96.7 0.0013 2.8E-08 68.5 3.6 129 97-238 779-909 (1153)
35 COG5238 RNA1 Ran GTPase-activa 96.6 0.039 8.6E-07 47.1 11.0 116 118-233 88-225 (388)
36 PF12799 LRR_4: Leucine Rich r 96.5 0.0023 5.1E-08 38.9 2.3 35 197-233 1-35 (44)
37 PLN03150 hypothetical protein; 96.5 0.0047 1E-07 60.2 5.5 86 144-231 438-524 (623)
38 smart00367 LRR_CC Leucine-rich 96.4 0.0039 8.4E-08 33.1 2.6 21 197-217 2-23 (26)
39 PF13855 LRR_8: Leucine rich r 96.3 0.00013 2.8E-09 47.9 -4.4 38 195-233 23-60 (61)
40 smart00367 LRR_CC Leucine-rich 96.3 0.0059 1.3E-07 32.4 3.0 24 121-144 1-24 (26)
41 PF13855 LRR_8: Leucine rich r 96.2 0.00021 4.6E-09 46.9 -3.6 59 148-208 1-60 (61)
42 KOG1259 Nischarin, modulator o 96.1 0.004 8.7E-08 53.7 2.5 105 120-233 305-410 (490)
43 KOG0444 Cytoskeletal regulator 96.0 0.001 2.3E-08 62.7 -1.6 68 195-286 243-310 (1255)
44 KOG2739 Leucine-rich acidic nu 95.8 0.0053 1.1E-07 51.8 2.2 60 146-205 63-124 (260)
45 KOG4194 Membrane glycoprotein 95.8 0.0014 3.1E-08 61.2 -1.3 82 146-233 315-403 (873)
46 KOG2739 Leucine-rich acidic nu 95.5 0.0065 1.4E-07 51.3 1.6 86 172-267 64-151 (260)
47 KOG1644 U2-associated snRNP A' 95.2 0.0082 1.8E-07 48.9 1.2 86 144-231 60-149 (233)
48 PLN03150 hypothetical protein; 95.1 0.02 4.3E-07 55.9 3.7 83 149-234 419-502 (623)
49 PF13516 LRR_6: Leucine Rich r 95.1 0.016 3.4E-07 30.0 1.6 23 196-218 1-23 (24)
50 KOG1859 Leucine-rich repeat pr 95.1 0.0026 5.6E-08 61.0 -2.4 102 120-231 185-288 (1096)
51 PF12799 LRR_4: Leucine Rich r 95.1 0.034 7.5E-07 33.7 3.3 37 122-161 1-37 (44)
52 PF13516 LRR_6: Leucine Rich r 94.8 0.026 5.6E-07 29.2 2.0 23 147-169 1-23 (24)
53 KOG2123 Uncharacterized conser 94.6 0.011 2.5E-07 50.5 0.4 87 147-239 18-105 (388)
54 smart00368 LRR_RI Leucine rich 93.3 0.13 2.9E-06 27.7 3.0 24 197-220 2-25 (28)
55 PF13013 F-box-like_2: F-box-l 93.3 0.13 2.8E-06 37.8 3.8 29 11-40 22-50 (109)
56 KOG1259 Nischarin, modulator o 93.2 0.047 1E-06 47.4 1.6 79 146-233 282-363 (490)
57 KOG0444 Cytoskeletal regulator 93.1 0.015 3.2E-07 55.3 -1.7 107 121-233 149-256 (1255)
58 KOG0618 Serine/threonine phosp 92.8 0.069 1.5E-06 52.9 2.4 102 96-208 383-487 (1081)
59 KOG4658 Apoptotic ATPase [Sign 92.2 0.19 4.1E-06 50.9 4.7 106 119-231 568-677 (889)
60 KOG4308 LRR-containing protein 90.8 0.14 3.1E-06 48.1 2.0 141 96-238 115-278 (478)
61 KOG4237 Extracellular matrix p 90.7 0.18 4E-06 45.4 2.5 86 142-229 268-353 (498)
62 KOG0274 Cdc4 and related F-box 90.5 0.11 2.4E-06 49.5 1.0 44 11-55 108-152 (537)
63 PRK15387 E3 ubiquitin-protein 89.3 0.36 7.9E-06 48.1 3.6 11 122-132 242-252 (788)
64 smart00368 LRR_RI Leucine rich 89.2 0.66 1.4E-05 24.9 3.1 24 148-171 2-25 (28)
65 PRK15387 E3 ubiquitin-protein 89.2 0.76 1.7E-05 45.9 5.7 51 122-183 222-272 (788)
66 KOG4308 LRR-containing protein 88.4 0.15 3.1E-06 48.0 0.1 87 147-233 203-301 (478)
67 KOG1644 U2-associated snRNP A' 88.4 0.34 7.4E-06 39.7 2.2 84 146-233 40-124 (233)
68 KOG3763 mRNA export factor TAP 88.4 0.91 2E-05 42.7 5.2 88 114-203 210-307 (585)
69 PF07723 LRR_2: Leucine Rich R 88.3 0.29 6.4E-06 25.8 1.2 25 198-222 1-26 (26)
70 KOG0531 Protein phosphatase 1, 88.2 0.13 2.9E-06 47.5 -0.2 107 121-237 94-201 (414)
71 KOG1859 Leucine-rich repeat pr 87.6 0.17 3.7E-06 49.1 0.0 24 121-144 108-131 (1096)
72 KOG4658 Apoptotic ATPase [Sign 87.4 0.34 7.4E-06 49.1 2.1 110 120-233 543-653 (889)
73 KOG0472 Leucine-rich repeat pr 87.4 0.7 1.5E-05 41.9 3.7 38 194-233 502-539 (565)
74 KOG4579 Leucine-rich repeat (L 85.9 0.41 8.9E-06 36.9 1.3 103 124-231 29-132 (177)
75 PF09372 PRANC: PRANC domain; 84.6 0.77 1.7E-05 33.0 2.2 25 9-33 70-94 (97)
76 PRK15370 E3 ubiquitin-protein 82.7 2.1 4.5E-05 42.8 5.0 77 148-232 346-425 (754)
77 KOG0617 Ras suppressor protein 82.3 0.07 1.5E-06 42.6 -4.3 101 122-231 33-136 (264)
78 KOG3926 F-box proteins [Amino 81.9 0.71 1.5E-05 39.3 1.2 53 2-55 193-246 (332)
79 PF13504 LRR_7: Leucine rich r 81.5 1.2 2.6E-05 20.8 1.4 12 222-233 1-12 (17)
80 KOG4579 Leucine-rich repeat (L 79.9 0.62 1.4E-05 35.9 0.2 62 143-207 72-133 (177)
81 PRK15386 type III secretion pr 78.8 2.4 5.2E-05 39.0 3.6 116 96-236 52-170 (426)
82 KOG3763 mRNA export factor TAP 78.6 5.4 0.00012 37.8 5.9 89 91-179 213-307 (585)
83 KOG0472 Leucine-rich repeat pr 78.5 0.39 8.4E-06 43.5 -1.4 19 192-210 247-265 (565)
84 KOG0617 Ras suppressor protein 78.1 0.064 1.4E-06 42.8 -5.7 108 120-233 77-184 (264)
85 KOG3735 Tropomodulin and leiom 74.0 8.7 0.00019 34.1 5.6 94 137-230 187-291 (353)
86 PRK15370 E3 ubiquitin-protein 73.6 6.2 0.00013 39.5 5.3 88 121-217 345-435 (754)
87 PF00560 LRR_1: Leucine Rich R 71.9 2.1 4.6E-05 21.3 0.9 13 223-236 1-13 (22)
88 COG4886 Leucine-rich repeat (L 71.3 2.3 5E-05 38.8 1.6 38 195-235 253-290 (394)
89 KOG0531 Protein phosphatase 1, 71.0 1.2 2.5E-05 41.3 -0.4 107 120-237 70-177 (414)
90 KOG2502 Tub family proteins [G 66.7 4.3 9.3E-05 36.0 2.2 51 9-59 43-104 (355)
91 KOG4237 Extracellular matrix p 66.7 3.1 6.7E-05 37.8 1.3 86 118-207 270-356 (498)
92 COG4886 Leucine-rich repeat (L 63.2 3.9 8.4E-05 37.4 1.4 58 149-210 141-199 (394)
93 smart00370 LRR Leucine-rich re 61.9 6.9 0.00015 20.1 1.7 13 197-209 2-14 (26)
94 smart00369 LRR_TYP Leucine-ric 61.9 6.9 0.00015 20.1 1.7 13 197-209 2-14 (26)
95 PRK15386 type III secretion pr 55.2 27 0.00058 32.3 5.3 93 119-232 49-142 (426)
96 smart00365 LRR_SD22 Leucine-ri 42.0 23 0.0005 18.6 1.7 14 197-210 2-15 (26)
97 PF13306 LRR_5: Leucine rich r 37.2 4.9 0.00011 29.9 -2.0 100 120-231 10-112 (129)
98 KOG3735 Tropomodulin and leiom 32.8 1.4E+02 0.003 26.8 5.9 89 110-198 186-281 (353)
99 PF07735 FBA_2: F-box associat 30.4 1.6E+02 0.0034 19.1 6.6 43 122-169 11-53 (70)
100 PF08004 DUF1699: Protein of u 28.6 1.2E+02 0.0027 22.8 4.2 33 173-205 17-49 (131)
101 smart00446 LRRcap occurring C- 23.0 65 0.0014 17.0 1.4 15 217-231 8-22 (26)
102 smart00364 LRR_BAC Leucine-ric 22.5 52 0.0011 17.3 1.0 13 197-209 2-14 (26)
103 KOG4408 Putative Mg2+ and Co2+ 21.3 24 0.00052 31.3 -0.7 46 10-56 7-52 (386)
104 COG4338 Uncharacterized protei 21.2 15 0.00034 22.3 -1.3 23 269-301 12-36 (54)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.2e-24 Score=181.96 Aligned_cols=226 Identities=20% Similarity=0.245 Sum_probs=168.7
Q ss_pred cCCCcCCCCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCcceeeeccccccc-----------cc--ccC----C
Q 021719 7 TVRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISN-----------YI--KIP----L 69 (308)
Q Consensus 7 ~~~~~~~LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~l~~~~~~-----------~~--~~~----~ 69 (308)
++.+|+.|||||+..||+.|..++++. ++.|||||++++.+.++|.++|+....-+ .. ..+ .
T Consensus 94 pgv~~~slpDEill~IFs~L~kk~LL~-~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~ 172 (419)
T KOG2120|consen 94 PGVSWDSLPDEILLGIFSCLCKKELLK-VSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMD 172 (419)
T ss_pred CCCCcccCCHHHHHHHHHhccHHHHHH-HHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhc
Confidence 345699999999999999999999999 99999999999999999999998763100 00 000 0
Q ss_pred CC-ceeecCCChHHHH----------HHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHH
Q 021719 70 EP-YVYVHGHSDKQLT----------RILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKT 138 (308)
Q Consensus 70 ~~-~~~~~~~~~~~l~----------~~l~~~~~~s~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~ 138 (308)
++ .+.+......++. .-....+-..|..++.+.+.+ ..++|.....++++ .+|+.|+|++|..++..
T Consensus 173 ~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n 250 (419)
T KOG2120|consen 173 QPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAKN-SNLVRLNLSMCSGFTEN 250 (419)
T ss_pred CchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhcc-ccceeeccccccccchh
Confidence 00 0000000000000 000011222466777787765 36788888888875 89999999999999999
Q ss_pred HHHHHHhcCCCCCEEEeCCCCCChHHHH-HHHHcCCCCCeeEecCC---CCHHHHHHHHhcCCCCcEEEee-CCCCCHHH
Q 021719 139 GICKAIRMWRDLESLTMPSIANPPYLME-EIAQNCRNFRELKIMGP---FDLLFASTLNMYLPKLKVLSLR-CTTLNRDA 213 (308)
Q Consensus 139 ~l~~~~~~~~~L~~L~l~~~~~~~~~l~-~l~~~~~~L~~L~l~~~---~~~~~~~~l~~~~p~L~~L~L~-~~~it~~~ 213 (308)
++..++..|..|.+|++++|..+.+.+. +++.-.++|+.|+++|+ +.+..+..+.+.||+|.+|+|+ ++.+++ +
T Consensus 251 ~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~ 329 (419)
T KOG2120|consen 251 ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-D 329 (419)
T ss_pred HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-h
Confidence 9999999999999999999976544444 34445689999999987 6677888888999999999999 777888 5
Q ss_pred HHHHHHcCCCCCEEecccCCCcC
Q 021719 214 LILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 214 l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
+...+.+++.|++|.++.|..+.
T Consensus 330 ~~~~~~kf~~L~~lSlsRCY~i~ 352 (419)
T KOG2120|consen 330 CFQEFFKFNYLQHLSLSRCYDII 352 (419)
T ss_pred HHHHHHhcchheeeehhhhcCCC
Confidence 55556679999999999999876
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.90 E-value=4.6e-24 Score=185.65 Aligned_cols=205 Identities=24% Similarity=0.393 Sum_probs=144.7
Q ss_pred CCCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCcceeeecccccccccccCCCCceeecCCChHHHHHHHHHHHH
Q 021719 13 DLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISNYIKIPLEPYVYVHGHSDKQLTRILKISLS 92 (308)
Q Consensus 13 ~LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 92 (308)
.||+|++.+||++|+.+.+.+ +++||+.|...+.|...|.++|+..... .... .++.....
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r-~a~~c~~~n~~AlD~~~~q~idL~t~~r-----Dv~g-------------~VV~~~~~ 134 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCR-AAQCCTMWNKLALDGSCWQHIDLFTFQR-----DVDG-------------GVVENMIS 134 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHH-HHHHHHHhhhhhhccccceeeehhcchh-----cCCC-------------cceehHhh
Confidence 599999999999999999999 9999999999999999999999987521 1111 11222345
Q ss_pred hcCCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCC-CCChHHHHHHHHc
Q 021719 93 LSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQN 171 (308)
Q Consensus 93 ~s~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~l~~l~~~ 171 (308)
+.++.++.+.+.++..+.++.+..++.+||+++.|++.+|..+|+..+..+...|++|++|++..| .+++..++.++..
T Consensus 135 Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 135 RCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred hhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 556777777777777777777777777777777777777777777777777777777777777776 5677777777777
Q ss_pred CCCCCeeEecCC--CCHHHHHHHHh--------------------------cCCCCcEEEee-CCCCCHHHHHHHHHcCC
Q 021719 172 CRNFRELKIMGP--FDLLFASTLNM--------------------------YLPKLKVLSLR-CTTLNRDALILILDGLQ 222 (308)
Q Consensus 172 ~~~L~~L~l~~~--~~~~~~~~l~~--------------------------~~p~L~~L~L~-~~~it~~~l~~l~~~~p 222 (308)
||+|++|+++.| +.+.++..+.. +++.+..+++. |+.+||+++..+...|.
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 777777777654 33333444444 44555555544 55555555555555555
Q ss_pred CCCEEecccCCCcC
Q 021719 223 NLEVLNISHCLLID 236 (308)
Q Consensus 223 ~L~~L~l~~C~~i~ 236 (308)
.|+.|+.++|..++
T Consensus 295 ~lq~l~~s~~t~~~ 308 (483)
T KOG4341|consen 295 ALQVLCYSSCTDIT 308 (483)
T ss_pred HhhhhcccCCCCCc
Confidence 56666665555555
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.61 E-value=1.3e-16 Score=139.40 Aligned_cols=205 Identities=20% Similarity=0.239 Sum_probs=156.9
Q ss_pred CCChHHHhhHHhHhhHHHHHhccCC-Ccceeeecccc---cccccccCCCCceeecCCChHHHHHHHHHHHHhcCCCccE
Q 021719 25 SFDIFELTSGIAHVCSSWRSACCDP-LLWKTLDLSML---ISNYIKIPLEPYVYVHGHSDKQLTRILKISLSLSRGSIRT 100 (308)
Q Consensus 25 ~L~~~d~~~~~s~VCr~Wr~~~~~p-~lw~~i~l~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~s~~~l~~ 100 (308)
++....... ++.+|+.|+.+...+ ..|.++.+... ..++...+.+ | ....-.+-++ .+.+.+..++.
T Consensus 176 ~iTd~s~~s-la~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlS---w----c~qi~~~gv~-~~~rG~~~l~~ 246 (483)
T KOG4341|consen 176 KITDSSLLS-LARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLS---W----CPQISGNGVQ-ALQRGCKELEK 246 (483)
T ss_pred eccHHHHHH-HHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhc---c----CchhhcCcch-HHhccchhhhh
Confidence 566677777 999999999999986 77777766532 1111111100 0 0000001111 23334444666
Q ss_pred EEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCC-CCChHHHHHHHHcCCCCCeeE
Q 021719 101 LIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQNCRNFRELK 179 (308)
Q Consensus 101 l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~l~~l~~~~~~L~~L~ 179 (308)
+...+|....++.+..++.+|+-+.++++..|..+||.++..+...|..|+.|+.+++ .+++..+.+++++|++|+.|.
T Consensus 247 ~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~ 326 (483)
T KOG4341|consen 247 LSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLE 326 (483)
T ss_pred hhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEe
Confidence 6666788888899999999999999999999999999999999999999999999988 788899999999999999999
Q ss_pred ecCC--CCHHHHHHHHhcCCCCcEEEee-CCCCCHHHHHHHHHcCCCCCEEecccCCCcCCC
Q 021719 180 IMGP--FDLLFASTLNMYLPKLKVLSLR-CTTLNRDALILILDGLQNLEVLNISHCLLIDVP 238 (308)
Q Consensus 180 l~~~--~~~~~~~~l~~~~p~L~~L~L~-~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~~ 238 (308)
+.+| +++.++..+..++|.|+.|++. +..+++..+..+..+||.|+.|.+++|..+|+.
T Consensus 327 l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 327 LSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE 388 (483)
T ss_pred ccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh
Confidence 9887 8888888899999999999998 556777788888888999999999999998876
No 4
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.41 E-value=1e-13 Score=86.82 Aligned_cols=46 Identities=35% Similarity=0.680 Sum_probs=40.7
Q ss_pred cCCCCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCcceeeec
Q 021719 11 WEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDL 57 (308)
Q Consensus 11 ~~~LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~l 57 (308)
|..||+||+.+||+||+..|+.+ +++|||+|++++.++.+|+++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~-~~~vcr~w~~~~~~~~lW~~~~~ 46 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLR-LSLVCRRWRRIANDNSLWRRLCL 46 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHH-HTTSSHHHHHHHTCCCHHHHHC-
T ss_pred ChHhHHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHCChhhhhhhcc
Confidence 67899999999999999999999 99999999999998899998765
No 5
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.17 E-value=1.2e-10 Score=109.27 Aligned_cols=135 Identities=21% Similarity=0.290 Sum_probs=68.1
Q ss_pred CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCC-CCCCCHH--HHHHHHhcCCCCCEEEeCCCC-CChHHHHHHHH
Q 021719 95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPA-WNRIKKT--GICKAIRMWRDLESLTMPSIA-NPPYLMEEIAQ 170 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~-~~~~~~~--~l~~~~~~~~~L~~L~l~~~~-~~~~~l~~l~~ 170 (308)
.+.++.+.+..+..+++..+..++..+++|+.|++.+ +..++.. ........|++|++|+++++. +++..+..++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4444555555555555555555555555555555554 2222211 123344455555555555553 55555555555
Q ss_pred cCCCCCeeEecCC--CCHHHHHHHHhcCCCCcEEEee-CCCCCHHHHHHHHHcCCCCCEEec
Q 021719 171 NCRNFRELKIMGP--FDLLFASTLNMYLPKLKVLSLR-CTTLNRDALILILDGLQNLEVLNI 229 (308)
Q Consensus 171 ~~~~L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~-~~~it~~~l~~l~~~~p~L~~L~l 229 (308)
.||+|+.|.+..| +++.++.+++..||+|++|+++ |..+++.++..+...||+|+.|.+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 5555555554444 3555555555555555555555 344555555555555555444443
No 6
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.17 E-value=1.2e-10 Score=109.14 Aligned_cols=149 Identities=25% Similarity=0.394 Sum_probs=121.5
Q ss_pred CCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCC--C--CChHHHHHHHHcCCCCCeeEecCC
Q 021719 108 YVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI--A--NPPYLMEEIAQNCRNFRELKIMGP 183 (308)
Q Consensus 108 ~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~--~~~~~l~~l~~~~~~L~~L~l~~~ 183 (308)
...+..+..+...+++|+.|.+..|..+++.++..+...+++|++|+++++ . ........+...|++|+.|++..+
T Consensus 174 ~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 253 (482)
T KOG1947|consen 174 LLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGC 253 (482)
T ss_pred cccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhh
Confidence 345666777777899999999999999999999999999999999999873 2 223344557788999999999876
Q ss_pred --CCHHHHHHHHhcCCCCcEEEee-CCCCCHHHHHHHHHcCCCCCEEecccCCCcCCCCCCChhHHhhhhhHHHHHHHHh
Q 021719 184 --FDLLFASTLNMYLPKLKVLSLR-CTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAAR 260 (308)
Q Consensus 184 --~~~~~~~~l~~~~p~L~~L~L~-~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 260 (308)
++|.++..++..||+|+.|.+. |..+|+.++..+...||+|++|++++|..+++ ..+.. +...+.+
T Consensus 254 ~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d----------~~l~~-~~~~c~~ 322 (482)
T KOG1947|consen 254 GLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD----------SGLEA-LLKNCPN 322 (482)
T ss_pred hccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH----------HHHHH-HHHhCcc
Confidence 7999999999899999999987 55599999999999999999999999999974 22322 3555656
Q ss_pred hhhhhcc
Q 021719 261 LRKFLTC 267 (308)
Q Consensus 261 l~~~~~c 267 (308)
++++...
T Consensus 323 l~~l~~~ 329 (482)
T KOG1947|consen 323 LRELKLL 329 (482)
T ss_pred hhhhhhh
Confidence 6665444
No 7
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=5.9e-10 Score=94.38 Aligned_cols=140 Identities=14% Similarity=0.197 Sum_probs=114.8
Q ss_pred CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCC--CCChHHHHHHHHcC
Q 021719 95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI--ANPPYLMEEIAQNC 172 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~l~~l~~~~ 172 (308)
...++.++++++..++...+..+.+.|..|.+|+|+.|...++.--..+..--++|+.|+++++ .+...-+..+++.|
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc 312 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC 312 (419)
T ss_pred cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC
Confidence 4578899999999999999999999999999999999966666533333344579999999998 45667888899999
Q ss_pred CCCCeeEecCC--CCHHHHHHHHhcCCCCcEEEee-CCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 173 RNFRELKIMGP--FDLLFASTLNMYLPKLKVLSLR-CTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 173 ~~L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~-~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
|+|.+|+++.+ +.++.+ .....++.|++|+++ |..+..+.+..+ ...|.|.+|++.||..-|
T Consensus 313 p~l~~LDLSD~v~l~~~~~-~~~~kf~~L~~lSlsRCY~i~p~~~~~l-~s~psl~yLdv~g~vsdt 377 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKNDCF-QEFFKFNYLQHLSLSRCYDIIPETLLEL-NSKPSLVYLDVFGCVSDT 377 (419)
T ss_pred CceeeeccccccccCchHH-HHHHhcchheeeehhhhcCCChHHeeee-ccCcceEEEEeccccCch
Confidence 99999999988 666444 444599999999999 777877776654 568999999999997554
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.95 E-value=3.7e-08 Score=87.45 Aligned_cols=138 Identities=24% Similarity=0.249 Sum_probs=93.9
Q ss_pred CCccEEEccCCCCCCHHHHHHHH---hhC-CCCcEEEcCCCCCCCHH---HHHHHHhcCCCCCEEEeCCCCCChHHHHHH
Q 021719 96 GSIRTLIFHFNLYVSDDQLTYTA---ERC-PQLKRLVMPAWNRIKKT---GICKAIRMWRDLESLTMPSIANPPYLMEEI 168 (308)
Q Consensus 96 ~~l~~l~l~~~~~~~d~~l~~l~---~~~-~~L~~L~L~~~~~~~~~---~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l 168 (308)
..++.+.+..+. +++..+..+. ..+ ++|+.|++.++. ++.. .+...+..+++|++|+++++.+++..+..+
T Consensus 108 ~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 185 (319)
T cd00116 108 SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGIGDAGIRAL 185 (319)
T ss_pred CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHH
Confidence 668888887654 4444444332 234 788888888874 4422 344455667788888888887776665555
Q ss_pred HH---cCCCCCeeEecCC-CCHHHHHHH---HhcCCCCcEEEeeCCCCCHHHHHHHHHcC----CCCCEEecccCCCc
Q 021719 169 AQ---NCRNFRELKIMGP-FDLLFASTL---NMYLPKLKVLSLRCTTLNRDALILILDGL----QNLEVLNISHCLLI 235 (308)
Q Consensus 169 ~~---~~~~L~~L~l~~~-~~~~~~~~l---~~~~p~L~~L~L~~~~it~~~l~~l~~~~----p~L~~L~l~~C~~i 235 (308)
.. .+++|+.|+++++ +++.....+ ...+|+|++|+++++.+++.++..+...+ +.|++|++++|...
T Consensus 186 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 186 AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 43 3358888888876 555544333 34677888888888888887777777664 68888888888533
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.88 E-value=4.9e-08 Score=86.62 Aligned_cols=137 Identities=19% Similarity=0.166 Sum_probs=81.5
Q ss_pred CCCccEEEccCCCCC--CHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHH---HHhcC-CCCCEEEeCCCCCChHHHHHH
Q 021719 95 RGSIRTLIFHFNLYV--SDDQLTYTAERCPQLKRLVMPAWNRIKKTGICK---AIRMW-RDLESLTMPSIANPPYLMEEI 168 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~--~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~---~~~~~-~~L~~L~l~~~~~~~~~l~~l 168 (308)
...++.+.+..+... ....+..+... ++|++|+++++ .+++.+... .+..+ ++|++|++++|.++......+
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 556777777665443 22233333434 56888888776 344433332 33455 777888888776664333322
Q ss_pred ---HHcCCCCCeeEecCC-CCHHHHHHHH---hcCCCCcEEEeeCCCCCHHHHHHH---HHcCCCCCEEecccCC
Q 021719 169 ---AQNCRNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTTLNRDALILI---LDGLQNLEVLNISHCL 233 (308)
Q Consensus 169 ---~~~~~~L~~L~l~~~-~~~~~~~~l~---~~~p~L~~L~L~~~~it~~~l~~l---~~~~p~L~~L~l~~C~ 233 (308)
...+++|+.|++.++ +++.+...+. ..+++|++|+++++.+++.+...+ +..+|+|++|++++|.
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 234567888888766 5655444443 244578888888777776665433 3456778888887764
No 10
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.82 E-value=4.5e-09 Score=63.45 Aligned_cols=40 Identities=25% Similarity=0.437 Sum_probs=37.4
Q ss_pred CCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCccee
Q 021719 14 LDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKT 54 (308)
Q Consensus 14 LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw~~ 54 (308)
||+|++.+||.+++..|+.. ++.|||+|+.++.++.+|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~-~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLR-LRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhcChhhhhc
Confidence 79999999999999999999 99999999999988888864
No 11
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.78 E-value=9.5e-10 Score=69.01 Aligned_cols=43 Identities=35% Similarity=0.612 Sum_probs=36.2
Q ss_pred CcCCCCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCcce
Q 021719 10 RWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWK 53 (308)
Q Consensus 10 ~~~~LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw~ 53 (308)
.|.+||+|++.+||++|+..|++. ++.|||+|++++.++.+|.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~-l~~vsk~~~~~~~~~~~~~ 44 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLR-LSLVSKRWRSLVDSPRLWK 44 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHH-HCTT-HHHHHHHTTHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHH-HHHHhhHHHHHHcCCCccH
Confidence 477899999999999999999999 9999999999998766664
No 12
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.53 E-value=2.5e-07 Score=89.68 Aligned_cols=142 Identities=22% Similarity=0.216 Sum_probs=99.7
Q ss_pred HHHHHHH-HhcCCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChH
Q 021719 85 RILKISL-SLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPY 163 (308)
Q Consensus 85 ~~l~~~~-~~s~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 163 (308)
.+++.++ +.+..+++++.+.+...+.......++...|+|++|.+.+-... .+.+..+...+|+|..||++++.+++-
T Consensus 110 ~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~-~~dF~~lc~sFpNL~sLDIS~TnI~nl 188 (699)
T KOG3665|consen 110 SLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD-NDDFSQLCASFPNLRSLDISGTNISNL 188 (699)
T ss_pred HHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec-chhHHHHhhccCccceeecCCCCccCc
Confidence 3444433 34677899999998888888888999999999999999987444 444889999999999999999977643
Q ss_pred HHHHHHHcCCCCCeeEecCC-CCH-HHHHHHHhcCCCCcEEEeeCCCCCHH--HHHHHHHc---CCCCCEEeccc
Q 021719 164 LMEEIAQNCRNFRELKIMGP-FDL-LFASTLNMYLPKLKVLSLRCTTLNRD--ALILILDG---LQNLEVLNISH 231 (308)
Q Consensus 164 ~l~~l~~~~~~L~~L~l~~~-~~~-~~~~~l~~~~p~L~~L~L~~~~it~~--~l~~l~~~---~p~L~~L~l~~ 231 (308)
..++ +.++|+.|.+.+- +.. ..+..+. ++.+|+.||++...-.+. -+...++. +|+|+.||.++
T Consensus 189 --~GIS-~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 189 --SGIS-RLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred --HHHh-ccccHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 3333 4677888877654 332 4455555 788888888884332222 23333332 67888887773
No 13
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.3e-07 Score=84.17 Aligned_cols=119 Identities=18% Similarity=0.157 Sum_probs=75.5
Q ss_pred HHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHh
Q 021719 116 YTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNM 194 (308)
Q Consensus 116 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~ 194 (308)
..++.||+++.|+|+..-......+..++..+|+|+.|+++.+.+....-.......++|+.|.+++| ++...+..++.
T Consensus 140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~ 219 (505)
T KOG3207|consen 140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILL 219 (505)
T ss_pred hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHH
Confidence 56667888888888876555667777888888888888888773321111111114567888888877 77777777877
Q ss_pred cCCCCcEEEeeCCC-CCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 195 YLPKLKVLSLRCTT-LNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 195 ~~p~L~~L~L~~~~-it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
.+|+|+.|.|.+|. +...+... +....|++|+|++...++
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLID 260 (505)
T ss_pred hCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCcccc
Confidence 88888888887652 22211111 113346666666555554
No 14
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.36 E-value=1.6e-06 Score=75.33 Aligned_cols=139 Identities=22% Similarity=0.243 Sum_probs=80.2
Q ss_pred CCCccEEEccCCCCCCH--HHHHHHHhhCCCCcEEEcCCCCCCCHHH---HHHHHhcCCCCCEEEeCCCCCChHHHHHHH
Q 021719 95 RGSIRTLIFHFNLYVSD--DQLTYTAERCPQLKRLVMPAWNRIKKTG---ICKAIRMWRDLESLTMPSIANPPYLMEEIA 169 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~~d--~~l~~l~~~~~~L~~L~L~~~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~ 169 (308)
...++.+.+..++.-+. ..+....+.+|.|+.+.++.. .+...+ +...+..||+|+.|++..|.++...-.+++
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 34455555544433222 223444455677777777754 332222 344456777777777777766554444444
Q ss_pred H---cCCCCCeeEecCC-CCHHHHHHH----HhcCCCCcEEEeeCCCCCHHHHHHHHHc---CCCCCEEecccCCC
Q 021719 170 Q---NCRNFRELKIMGP-FDLLFASTL----NMYLPKLKVLSLRCTTLNRDALILILDG---LQNLEVLNISHCLL 234 (308)
Q Consensus 170 ~---~~~~L~~L~l~~~-~~~~~~~~l----~~~~p~L~~L~L~~~~it~~~l~~l~~~---~p~L~~L~l~~C~~ 234 (308)
. ..|+|+.|+++.| +.+.++.++ -...|+|+.|.+.++.|+.++...+... -|.|+.|+|++|..
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 3 3456777777776 444444333 3456777777777777776665544332 47777777777765
No 15
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.33 E-value=5.9e-06 Score=71.84 Aligned_cols=142 Identities=18% Similarity=0.188 Sum_probs=76.2
Q ss_pred CCccEEEccCCCCC--CHHHHHHHHhhCCCCcEEEcCCCCCCCHHH------------HHHHHhcCCCCCEEEeCCCCCC
Q 021719 96 GSIRTLIFHFNLYV--SDDQLTYTAERCPQLKRLVMPAWNRIKKTG------------ICKAIRMWRDLESLTMPSIANP 161 (308)
Q Consensus 96 ~~l~~l~l~~~~~~--~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~------------l~~~~~~~~~L~~L~l~~~~~~ 161 (308)
+.++.+.++.+.+- ....+..+.+.|..|++|-|.+|. +...+ ....+..-++|+.+..+.|...
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 38888888765432 234466666678888888888773 33222 1112224456666666666433
Q ss_pred h---HHHHHHHHcCCCCCeeEecCC-CCHHHHHHH---HhcCCCCcEEEeeCCCCCHHHHHHHH---HcCCCCCEEeccc
Q 021719 162 P---YLMEEIAQNCRNFRELKIMGP-FDLLFASTL---NMYLPKLKVLSLRCTTLNRDALILIL---DGLQNLEVLNISH 231 (308)
Q Consensus 162 ~---~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l---~~~~p~L~~L~L~~~~it~~~l~~l~---~~~p~L~~L~l~~ 231 (308)
+ ..+....+.+|.|+.+++..+ +...+...+ +.+||.|+.|+|..|.++..+=..+. ...|+|+.|++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 2 223333345566666666544 332222111 34566666666666666554433332 3345666666666
Q ss_pred CCCcCCC
Q 021719 232 CLLIDVP 238 (308)
Q Consensus 232 C~~i~~~ 238 (308)
|-.-+.+
T Consensus 251 cll~~~G 257 (382)
T KOG1909|consen 251 CLLENEG 257 (382)
T ss_pred ccccccc
Confidence 6554443
No 16
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2.7e-06 Score=75.99 Aligned_cols=114 Identities=19% Similarity=0.273 Sum_probs=91.3
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCC-ChHHHHHHHHcCCCCCeeEecCC----CCHHHHHHHHh
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIAN-PPYLMEEIAQNCRNFRELKIMGP----FDLLFASTLNM 194 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~-~~~~l~~l~~~~~~L~~L~l~~~----~~~~~~~~l~~ 194 (308)
...+|+...|..+ .+...+.......||+++.|+|+.+-+ .-..+..|+...|+|+.|+++.+ +.+... ..
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~---~~ 194 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT---TL 194 (505)
T ss_pred hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc---hh
Confidence 3456888888877 666666557888999999999999943 45778888889999999999875 222211 12
Q ss_pred cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcCC
Q 021719 195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV 237 (308)
Q Consensus 195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~ 237 (308)
.++.|+.|.|+.+.++...+..++..||+|+.|.+.+...+..
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~ 237 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI 237 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce
Confidence 6899999999999999999999999999999999998865543
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.12 E-value=4.4e-07 Score=72.97 Aligned_cols=107 Identities=21% Similarity=0.221 Sum_probs=41.2
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCH-HHHHHHHhcCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDL-LFASTLNMYLP 197 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~-~~~~~l~~~~p 197 (308)
...+|+.|+|+.+.-.+-++ +..++.|++|+++++.++.-. ..+...+|+|++|.+.++ +.+ ..+.. ...+|
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~-L~~l~ 113 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEP-LSSLP 113 (175)
T ss_dssp T-TT--EEE-TTS--S--TT--------TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGG-GGG-T
T ss_pred hhcCCCEEECCCCCCccccC----ccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHH-HHcCC
Confidence 45677777777663222222 345677777777777654311 223345777777777765 222 11222 23677
Q ss_pred CCcEEEeeCCCCCHHHH--HHHHHcCCCCCEEecccC
Q 021719 198 KLKVLSLRCTTLNRDAL--ILILDGLQNLEVLNISHC 232 (308)
Q Consensus 198 ~L~~L~L~~~~it~~~l--~~l~~~~p~L~~L~l~~C 232 (308)
+|+.|+|.+|.+++..- ..++..+|+|+.||-...
T Consensus 114 ~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 114 KLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp T--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 77777777766653321 234456777777776543
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.08 E-value=9.2e-07 Score=71.17 Aligned_cols=130 Identities=18% Similarity=0.188 Sum_probs=52.1
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCC
Q 021719 121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL 199 (308)
Q Consensus 121 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L 199 (308)
+-++++|+|.+. .++. +..+-..+.+|+.|++++|.+.. +..+. .+++|+.|.++++ ++.-. ..+...+|+|
T Consensus 18 ~~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~--l~~l~-~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L 90 (175)
T PF14580_consen 18 PVKLRELNLRGN-QIST--IENLGATLDKLEVLDLSNNQITK--LEGLP-GLPRLKTLDLSNNRISSIS-EGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S-C-HHHHHH-TT-
T ss_pred cccccccccccc-cccc--ccchhhhhcCCCEEECCCCCCcc--ccCcc-ChhhhhhcccCCCCCCccc-cchHHhCCcC
Confidence 457899999977 3322 33444467899999999997652 33333 3789999999987 43321 1233469999
Q ss_pred cEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcCCCCCCChhHHhhhhhHHHHHHHHhhhhhhcc
Q 021719 200 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAARLRKFLTC 267 (308)
Q Consensus 200 ~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~c 267 (308)
++|.++.|.|.+-.-..-++.+|+|+.|++.+.+-... ..+...+......|+.+...
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~----------~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK----------KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS----------TTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch----------hhHHHHHHHHcChhheeCCE
Confidence 99999998886533233456799999999998875543 23445577777777766544
No 19
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.96 E-value=1.5e-05 Score=77.51 Aligned_cols=111 Identities=25% Similarity=0.240 Sum_probs=84.9
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCc
Q 021719 122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK 200 (308)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~ 200 (308)
.+|+.|++++...+...........+|.|++|.+.+-.+..+-+..+..+.|+|..|++++. +++- .....+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence 57999999987777666667777889999999998886665668888888899999999876 5442 2334788999
Q ss_pred EEEeeCCCCCH-HHHHHHHHcCCCCCEEecccCCCcC
Q 021719 201 VLSLRCTTLNR-DALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 201 ~L~L~~~~it~-~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
.|.+.+-.+.. ..+..++ .+.+|+.|||+.-...+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~ 234 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNND 234 (699)
T ss_pred HHhccCCCCCchhhHHHHh-cccCCCeeecccccccc
Confidence 99888777665 4455554 68999999999765554
No 20
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=4.4e-05 Score=61.72 Aligned_cols=85 Identities=21% Similarity=0.311 Sum_probs=58.8
Q ss_pred CCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC--CCHHHHHHHHhcCCCCcEEEee-CCCCCHHHHHHHHHcCCCCCE
Q 021719 150 LESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP--FDLLFASTLNMYLPKLKVLSLR-CTTLNRDALILILDGLQNLEV 226 (308)
Q Consensus 150 L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~-~~~it~~~l~~l~~~~p~L~~ 226 (308)
++.++-+++.+..+.+..+. .++.|+.|.+..| ++|..+..+..-.|+|+.|+|+ |.+||+.|+.-+. .+++|+.
T Consensus 103 IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHH
Confidence 45566666666667776665 3677777777766 6777777776667788888887 6678888876553 5777777
Q ss_pred EecccCCCcC
Q 021719 227 LNISHCLLID 236 (308)
Q Consensus 227 L~l~~C~~i~ 236 (308)
|.|.+-..+.
T Consensus 181 L~l~~l~~v~ 190 (221)
T KOG3864|consen 181 LHLYDLPYVA 190 (221)
T ss_pred HHhcCchhhh
Confidence 7777655444
No 21
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=97.69 E-value=1.8e-05 Score=67.85 Aligned_cols=50 Identities=26% Similarity=0.549 Sum_probs=44.1
Q ss_pred CcCCCCHHHHHHHhcC-----CChHHHhhHHhHhhHHHHHhccCCCcceeeecccc
Q 021719 10 RWEDLDNDILVKIFQS-----FDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSML 60 (308)
Q Consensus 10 ~~~~LP~eiL~~If~~-----L~~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~l~~~ 60 (308)
.|..||+|||..||.. ++.+++.. ++.|||.|+..+++|.+|+..-+..|
T Consensus 106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~-~s~vCr~F~~~~R~~~lwR~aC~KvW 160 (366)
T KOG2997|consen 106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQ-LSLVCRGFYKCARDPELWRLACLKVW 160 (366)
T ss_pred hhhhCCHHHHHHHHHHHHhhhcchhhHHH-hHhhHHHHHHHHcChHHHHHHHHHHH
Confidence 3678999999999974 78899999 99999999999999999997766555
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.64 E-value=2.8e-05 Score=75.55 Aligned_cols=114 Identities=24% Similarity=0.277 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHhhCCCCcEEEcCCCC--CCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC--
Q 021719 108 YVSDDQLTYTAERCPQLKRLVMPAWN--RIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-- 183 (308)
Q Consensus 108 ~~~d~~l~~l~~~~~~L~~L~L~~~~--~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-- 183 (308)
.++|+.+..+. ..++||.|+|++.. .+.+ ....+++.|++|.|+++.+..-. ..++ .|+.|++|...++
T Consensus 370 ~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpa----s~~~kle~LeeL~LSGNkL~~Lp-~tva-~~~~L~tL~ahsN~l 442 (1081)
T KOG0618|consen 370 HLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPA----SKLRKLEELEELNLSGNKLTTLP-DTVA-NLGRLHTLRAHSNQL 442 (1081)
T ss_pred cccccchhhhc-cccceeeeeecccccccCCH----HHHhchHHhHHHhcccchhhhhh-HHHH-hhhhhHHHhhcCCce
Confidence 34555554443 46899999999762 2333 34567889999999999665222 3333 4888999988765
Q ss_pred -CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCC
Q 021719 184 -FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 234 (308)
Q Consensus 184 -~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~ 234 (308)
..+ .+. .+|.|+.+++++|+++...+...... |+|++||++|..+
T Consensus 443 ~~fP----e~~-~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 443 LSFP----ELA-QLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred eech----hhh-hcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 122 232 78999999999999987776654433 8999999998775
No 23
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.64 E-value=1.2e-05 Score=74.46 Aligned_cols=110 Identities=19% Similarity=0.235 Sum_probs=67.5
Q ss_pred hCCCCcEEEcCCCC--CCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-----CCHHHHHHH
Q 021719 120 RCPQLKRLVMPAWN--RIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-----FDLLFASTL 192 (308)
Q Consensus 120 ~~~~L~~L~L~~~~--~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-----~~~~~~~~l 192 (308)
.|++|+.|+|+... .+.+.. +..+..|++|.|+.+.++.-.-.+ .....+|+.|+|..+ +.| ....
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~s----f~~L~~Le~LnLs~Nsi~~l~e~a-f~~lssL~~LdLr~N~ls~~IED--aa~~ 387 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGS----FRVLSQLEELNLSHNSIDHLAEGA-FVGLSSLHKLDLRSNELSWCIED--AAVA 387 (873)
T ss_pred hcccceeEeccccccccCChhH----HHHHHHhhhhcccccchHHHHhhH-HHHhhhhhhhcCcCCeEEEEEec--chhh
Confidence 35666666666541 122222 233456666666666443211111 224568888888764 344 3344
Q ss_pred HhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcCC
Q 021719 193 NMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV 237 (308)
Q Consensus 193 ~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~ 237 (308)
..++|.|++|.|.+|++....= ..+.++++||+||+.+....+.
T Consensus 388 f~gl~~LrkL~l~gNqlk~I~k-rAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTGNQLKSIPK-RAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred hccchhhhheeecCceeeecch-hhhccCcccceecCCCCcceee
Confidence 5689999999999998754332 3456899999999998765554
No 24
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.63 E-value=7.2e-05 Score=76.60 Aligned_cols=88 Identities=16% Similarity=0.139 Sum_probs=48.7
Q ss_pred HhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCC
Q 021719 144 IRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQ 222 (308)
Q Consensus 144 ~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p 222 (308)
+..+++|+.|+++++.+.......+. .+++|++|+++++ +....... ...+++|+.|+|+++.++... ...+..++
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~ 236 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSGEI-PYEIGGLT 236 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhh-hCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCCcC-ChhHhcCC
Confidence 44566666666666644332222333 3566666666654 22211112 236677777777766655322 22345678
Q ss_pred CCCEEecccCCC
Q 021719 223 NLEVLNISHCLL 234 (308)
Q Consensus 223 ~L~~L~l~~C~~ 234 (308)
+|++|++++|..
T Consensus 237 ~L~~L~L~~n~l 248 (968)
T PLN00113 237 SLNHLDLVYNNL 248 (968)
T ss_pred CCCEEECcCcee
Confidence 888888887753
No 25
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.56 E-value=9.1e-05 Score=75.86 Aligned_cols=61 Identities=16% Similarity=0.086 Sum_probs=32.0
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP 183 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 183 (308)
.+++|+.|+|+++.... .+...+..+++|+.|++++|.+.......+. .+++|+.|.++++
T Consensus 162 ~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n 222 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVG--KIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYN 222 (968)
T ss_pred cCCCCCEEECccCcccc--cCChhhhhCcCCCeeeccCCCCcCcCChHHc-CcCCccEEECcCC
Confidence 46777777777653211 1122345666777777766654432222222 2455666655543
No 26
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.00013 Score=61.99 Aligned_cols=76 Identities=18% Similarity=0.203 Sum_probs=35.6
Q ss_pred CCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcE
Q 021719 123 QLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKV 201 (308)
Q Consensus 123 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~ 201 (308)
+.+.|+..+| .++|- .++.++|.|+.|.|+-+.++ .+..+. .|.+|++|.|..+ +.+-.-....+++|+|+.
T Consensus 20 ~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvNkIs--sL~pl~-rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 20 NVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVNKIS--SLAPLQ-RCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HhhhhcccCC-CccHH---HHHHhcccceeEEeeccccc--cchhHH-HHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 4455555555 34442 23345555555555555443 233333 2555555555433 333322333445555555
Q ss_pred EEee
Q 021719 202 LSLR 205 (308)
Q Consensus 202 L~L~ 205 (308)
|-|.
T Consensus 93 LWL~ 96 (388)
T KOG2123|consen 93 LWLD 96 (388)
T ss_pred Hhhc
Confidence 5554
No 27
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.00025 Score=60.88 Aligned_cols=92 Identities=18% Similarity=0.113 Sum_probs=41.5
Q ss_pred HHHHHhcCCCCCEEEeCCCCCCh-HHHHHHHHcCCCCCeeEecCCCCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHH
Q 021719 140 ICKAIRMWRDLESLTMPSIANPP-YLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILIL 218 (308)
Q Consensus 140 l~~~~~~~~~L~~L~l~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~ 218 (308)
+..+...+..+++|++.++.+++ .-+.+|..+.|.|+.|+++++.-...+.++.-...+|+.|-|.++.++...+...+
T Consensus 63 ~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l 142 (418)
T KOG2982|consen 63 VMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL 142 (418)
T ss_pred HHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhh
Confidence 33444445555555555554432 33444444555555555554311111111111233555555555555555555555
Q ss_pred HcCCCCCEEeccc
Q 021719 219 DGLQNLEVLNISH 231 (308)
Q Consensus 219 ~~~p~L~~L~l~~ 231 (308)
+..|.+++|+++.
T Consensus 143 ~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 143 DDLPKVTELHMSD 155 (418)
T ss_pred hcchhhhhhhhcc
Confidence 5555555554443
No 28
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.14 E-value=0.026 Score=48.23 Aligned_cols=146 Identities=16% Similarity=0.125 Sum_probs=91.5
Q ss_pred cCCCccEEEccCCCCC--CHHHHHHHHhhCCCCcEEEcCCCCCCC--HHH----HHH-----HHhcCCCCCEEEeCCCCC
Q 021719 94 SRGSIRTLIFHFNLYV--SDDQLTYTAERCPQLKRLVMPAWNRIK--KTG----ICK-----AIRMWRDLESLTMPSIAN 160 (308)
Q Consensus 94 s~~~l~~l~l~~~~~~--~d~~l~~l~~~~~~L~~L~L~~~~~~~--~~~----l~~-----~~~~~~~L~~L~l~~~~~ 160 (308)
.|++++.+.++.+.+- ..+.+.-+.....+|+.|.|+++.--. ... +.. -+..-|.|+....+.+.+
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 3677777777654432 223344444556788888888763221 111 111 123557888888887743
Q ss_pred C---hHHHHHHHHcCCCCCeeEecCC-CCHHHHHHH----HhcCCCCcEEEeeCCCCCHHHHHHHHH---cCCCCCEEec
Q 021719 161 P---PYLMEEIAQNCRNFRELKIMGP-FDLLFASTL----NMYLPKLKVLSLRCTTLNRDALILILD---GLQNLEVLNI 229 (308)
Q Consensus 161 ~---~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l----~~~~p~L~~L~L~~~~it~~~l~~l~~---~~p~L~~L~l 229 (308)
. ........+.-.+|+.+++..+ +.+.++..+ +..+.+|+.|+|..|.+|..+-..+.. ..|.|+.|.+
T Consensus 170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l 249 (388)
T COG5238 170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL 249 (388)
T ss_pred ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence 2 2233333333368889988766 666654433 357899999999988888766544443 3678999999
Q ss_pred ccCCCcCCCC
Q 021719 230 SHCLLIDVPL 239 (308)
Q Consensus 230 ~~C~~i~~~~ 239 (308)
.+|--.+.+.
T Consensus 250 nDClls~~G~ 259 (388)
T COG5238 250 NDCLLSNEGV 259 (388)
T ss_pred cchhhccccH
Confidence 9998777544
No 29
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.00073 Score=58.06 Aligned_cols=105 Identities=12% Similarity=0.142 Sum_probs=75.6
Q ss_pred EccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEec
Q 021719 102 IFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIM 181 (308)
Q Consensus 102 ~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~ 181 (308)
.+.++.--+......++..|..++.++|.+..-...+.+..++.++|.|+.|+++.+.+... +..+-.-..+|++|-++
T Consensus 51 vln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLN 129 (418)
T KOG2982|consen 51 VLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLN 129 (418)
T ss_pred eecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEc
Confidence 33444434555677888899999999999875556678888999999999999998865532 22221224589999998
Q ss_pred CC-CCHHHHHHHHhcCCCCcEEEeeCC
Q 021719 182 GP-FDLLFASTLNMYLPKLKVLSLRCT 207 (308)
Q Consensus 182 ~~-~~~~~~~~l~~~~p~L~~L~L~~~ 207 (308)
+. ++..........+|.++.|+++.|
T Consensus 130 gT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 130 GTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred CCCCChhhhhhhhhcchhhhhhhhccc
Confidence 86 666666777777888887776643
No 30
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.00064 Score=55.14 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=35.6
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCC-CCChHHHHHHHHcCCCCCeeEecC
Q 021719 121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQNCRNFRELKIMG 182 (308)
Q Consensus 121 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~l~~l~~~~~~L~~L~l~~ 182 (308)
++.|+.|.+..|..+.|.++..+..-.|+|+.|+|+.| .+++..+..+.+ .++|+.|.|.+
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr~L~l~~ 185 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLRRLHLYD 185 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhHHHHhcC
Confidence 45566666666655666555555555566666666655 455555555554 55666666554
No 31
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.01 E-value=0.00054 Score=71.36 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=31.7
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC
Q 021719 121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP 183 (308)
Q Consensus 121 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 183 (308)
.++|+.|+|+++..... +...+..+++|+.|++++|......-.. ..+++|+.|++++|
T Consensus 777 ~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~LP~~--~~L~sL~~L~Ls~c 835 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLETLPTG--INLESLESLDLSGC 835 (1153)
T ss_pred cccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCeeCCC--CCccccCEEECCCC
Confidence 35677777766543322 2333567778888888776311111000 13566777777665
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.01 E-value=0.00031 Score=60.98 Aligned_cols=45 Identities=29% Similarity=0.568 Sum_probs=41.4
Q ss_pred CCCC----HHHHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCcceeeec
Q 021719 12 EDLD----NDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDL 57 (308)
Q Consensus 12 ~~LP----~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~l 57 (308)
..|| ++|-..||+||+..++.. +-.|||+|+++..+|.+|+.+-.
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~-celv~k~W~r~l~dg~~WKkLie 124 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCA-CELVCKEWKRVLSDGMLWKKLIE 124 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhH-HHHHHHHHHHHhccchHHHHHHH
Confidence 6799 999999999999999999 99999999999999999986643
No 33
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.92 E-value=0.0008 Score=60.33 Aligned_cols=38 Identities=29% Similarity=0.621 Sum_probs=34.4
Q ss_pred CCcCCCCHHHHHHHhcCC-ChHHHhhHHhHhhHHHHHhcc
Q 021719 9 RRWEDLDNDILVKIFQSF-DIFELTSGIAHVCSSWRSACC 47 (308)
Q Consensus 9 ~~~~~LP~eiL~~If~~L-~~~d~~~~~s~VCr~Wr~~~~ 47 (308)
.+|++||+|+|..|...| ...|+++ .+.||+.||..+.
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~-~~~vC~sWr~a~~ 40 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKR-FRSICRSWRSSVS 40 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHH-HHhhhhhHHHhcc
Confidence 479999999999999999 4678888 9999999999875
No 34
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.69 E-value=0.0013 Score=68.55 Aligned_cols=129 Identities=18% Similarity=0.271 Sum_probs=82.2
Q ss_pred CccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCC
Q 021719 97 SIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFR 176 (308)
Q Consensus 97 ~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 176 (308)
.++.+.+..+..... +..-...+++|+.|++.+|..+.. +.... .+++|+.|++++|... ..+....++|+
T Consensus 779 sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~--LP~~~-~L~sL~~L~Ls~c~~L----~~~p~~~~nL~ 849 (1153)
T PLN03210 779 SLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLET--LPTGI-NLESLESLDLSGCSRL----RTFPDISTNIS 849 (1153)
T ss_pred cchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCe--eCCCC-CccccCEEECCCCCcc----ccccccccccC
Confidence 455666654432211 111234689999999999866542 11111 5789999999998321 11122346899
Q ss_pred eeEecCC-CCHHHHHHHHhcCCCCcEEEee-CCCCCHHHHHHHHHcCCCCCEEecccCCCcCCC
Q 021719 177 ELKIMGP-FDLLFASTLNMYLPKLKVLSLR-CTTLNRDALILILDGLQNLEVLNISHCLLIDVP 238 (308)
Q Consensus 177 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~-~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~~ 238 (308)
.|.+++. +.. .... ...+++|+.|+|. |+.++. +..-...+++|+.|++++|..++..
T Consensus 850 ~L~Ls~n~i~~-iP~s-i~~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 850 DLNLSRTGIEE-VPWW-IEKFSNLSFLDMNGCNNLQR--VSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred EeECCCCCCcc-ChHH-HhcCCCCCEEECCCCCCcCc--cCcccccccCCCeeecCCCcccccc
Confidence 9999876 331 1122 3479999999998 566653 2233456899999999999988743
No 35
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.60 E-value=0.039 Score=47.14 Aligned_cols=116 Identities=14% Similarity=0.119 Sum_probs=80.8
Q ss_pred HhhCCCCcEEEcCCCCCC--CHHHHHHHHhcCCCCCEEEeCCCCCChH-------HHHHHH-----HcCCCCCeeEecCC
Q 021719 118 AERCPQLKRLVMPAWNRI--KKTGICKAIRMWRDLESLTMPSIANPPY-------LMEEIA-----QNCRNFRELKIMGP 183 (308)
Q Consensus 118 ~~~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~l~~~~~~~~-------~l~~l~-----~~~~~L~~L~l~~~ 183 (308)
.-.||+|+..+|+....- +...+..++++-.+|++|.+++|.+++. .+..++ ..-|.|++.....+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 346999999999975322 3456777888889999999999855432 222332 24577888877654
Q ss_pred ----CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHH----HcCCCCCEEecccCC
Q 021719 184 ----FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILIL----DGLQNLEVLNISHCL 233 (308)
Q Consensus 184 ----~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~----~~~p~L~~L~l~~C~ 233 (308)
.+-.......++-.+|+.+.+..|.|-.+|+.+++ ..|.+|+.|||.+..
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence 22233334444557999999999999999877654 348999999998654
No 36
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.47 E-value=0.0023 Score=38.86 Aligned_cols=35 Identities=34% Similarity=0.381 Sum_probs=25.5
Q ss_pred CCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 197 PKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 197 p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
++|++|+++++.+++ +...+..+|+|+.|+++++.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 578888888888875 44446778889999888885
No 37
>PLN03150 hypothetical protein; Provisional
Probab=96.45 E-value=0.0047 Score=60.17 Aligned_cols=86 Identities=16% Similarity=0.205 Sum_probs=38.8
Q ss_pred HhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCC
Q 021719 144 IRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQ 222 (308)
Q Consensus 144 ~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p 222 (308)
+..+++|+.|+|+++.+....-..+. .+++|+.|+++++ +.......+ ..+++|+.|+|++|.++...-..+.....
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~ 515 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESL-GQLTSLRILNLNGNSLSGRVPAALGGRLL 515 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCCCCCCCchHH-hcCCCCCEEECcCCcccccCChHHhhccc
Confidence 44556666666666544332222222 3556666666554 221111122 25566666666655544322222222223
Q ss_pred CCCEEeccc
Q 021719 223 NLEVLNISH 231 (308)
Q Consensus 223 ~L~~L~l~~ 231 (308)
++..+++.+
T Consensus 516 ~~~~l~~~~ 524 (623)
T PLN03150 516 HRASFNFTD 524 (623)
T ss_pred cCceEEecC
Confidence 444555543
No 38
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.39 E-value=0.0039 Score=33.12 Aligned_cols=21 Identities=33% Similarity=0.729 Sum_probs=9.6
Q ss_pred CCCcEEEee-CCCCCHHHHHHH
Q 021719 197 PKLKVLSLR-CTTLNRDALILI 217 (308)
Q Consensus 197 p~L~~L~L~-~~~it~~~l~~l 217 (308)
|+|++|+|+ |..+||.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 444444444 334444444443
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.30 E-value=0.00013 Score=47.92 Aligned_cols=38 Identities=29% Similarity=0.339 Sum_probs=20.5
Q ss_pred cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
.+++|++|+++++.++.-. ...+.++|+|++|++++|.
T Consensus 23 ~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 23 NLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSS
T ss_pred CCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCc
Confidence 5566666666655554211 1234556666666666653
No 40
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.29 E-value=0.0059 Score=32.41 Aligned_cols=24 Identities=25% Similarity=0.564 Sum_probs=15.4
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHH
Q 021719 121 CPQLKRLVMPAWNRIKKTGICKAI 144 (308)
Q Consensus 121 ~~~L~~L~L~~~~~~~~~~l~~~~ 144 (308)
||+|+.|+|++|..++|.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 566666777766666666665543
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.22 E-value=0.00021 Score=46.88 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=27.0
Q ss_pred CCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCC
Q 021719 148 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTT 208 (308)
Q Consensus 148 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~ 208 (308)
|+|++|+++++.+..-.- .....+++|++|+++++ +..-. ......+|+|++|+++++.
T Consensus 1 p~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPP-DSFSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECT-TTTTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCH-HHHcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCc
Confidence 345555555553321100 11123556666666554 21100 0123467777777777654
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.08 E-value=0.004 Score=53.73 Aligned_cols=105 Identities=16% Similarity=0.126 Sum_probs=64.2
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
-.|.++.|+++...-.+.. + +..+++|++||++++.++ .+...-...-|+++|.+.++ +.+ + .-...+-+
T Consensus 305 L~Pkir~L~lS~N~i~~v~---n-La~L~~L~~LDLS~N~Ls--~~~Gwh~KLGNIKtL~La~N~iE~--L-SGL~KLYS 375 (490)
T KOG1259|consen 305 LAPKLRRLILSQNRIRTVQ---N-LAELPQLQLLDLSGNLLA--ECVGWHLKLGNIKTLKLAQNKIET--L-SGLRKLYS 375 (490)
T ss_pred hccceeEEeccccceeeeh---h-hhhcccceEeecccchhH--hhhhhHhhhcCEeeeehhhhhHhh--h-hhhHhhhh
Confidence 3578888888765322222 2 456778888888877443 22222334567788887765 221 1 11235667
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
|..|++++|+|..-.-..-+.+.|.||.|.+.+..
T Consensus 376 LvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 376 LVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred heeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 88888888887643322334568889988887654
No 43
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=95.98 E-value=0.001 Score=62.67 Aligned_cols=68 Identities=25% Similarity=0.255 Sum_probs=40.6
Q ss_pred cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcCCCCCCChhHHhhhhhHHHHHHHHhhhhhhccccccccc
Q 021719 195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAARLRKFLTCMEDSCIM 274 (308)
Q Consensus 195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~c~~~~c~~ 274 (308)
.+++|+.|+|++|.||.-. .-.....+||+|+++....... +.-+-+.++|+++..-.+
T Consensus 243 ~l~~LrrLNLS~N~iteL~--~~~~~W~~lEtLNlSrNQLt~L--------------P~avcKL~kL~kLy~n~N----- 301 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKITELN--MTEGEWENLETLNLSRNQLTVL--------------PDAVCKLTKLTKLYANNN----- 301 (1255)
T ss_pred hhhhhheeccCcCceeeee--ccHHHHhhhhhhccccchhccc--------------hHHHhhhHHHHHHHhccC-----
Confidence 5678888888887776432 2234456788888876543321 223455567777665433
Q ss_pred ccCccCcccchh
Q 021719 275 CQRTKNDEGIMR 286 (308)
Q Consensus 275 ~~~~~~~~~~~~ 286 (308)
.++.+|+++
T Consensus 302 ---kL~FeGiPS 310 (1255)
T KOG0444|consen 302 ---KLTFEGIPS 310 (1255)
T ss_pred ---cccccCCcc
Confidence 466666655
No 44
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.84 E-value=0.0053 Score=51.79 Aligned_cols=60 Identities=22% Similarity=0.166 Sum_probs=27.7
Q ss_pred cCCCCCEEEeCCCCC-ChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEee
Q 021719 146 MWRDLESLTMPSIAN-PPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLR 205 (308)
Q Consensus 146 ~~~~L~~L~l~~~~~-~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~ 205 (308)
.+|+|+.|.++.+.. ....+..++..||+|++|+++++ +.+-....-.+.+++|..|++.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~ 124 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLF 124 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcc
Confidence 455666666666521 12334444445555555555554 2221111112344555555554
No 45
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=95.83 E-value=0.0014 Score=61.21 Aligned_cols=82 Identities=21% Similarity=0.190 Sum_probs=45.7
Q ss_pred cCCCCCEEEeCCCCCC---hHHHHHHHHcCCCCCeeEecCCCCHHHHHHHHhcCCCCcEEEeeCCCC----CHHHHHHHH
Q 021719 146 MWRDLESLTMPSIANP---PYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTL----NRDALILIL 218 (308)
Q Consensus 146 ~~~~L~~L~l~~~~~~---~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~i----t~~~l~~l~ 218 (308)
.+++|++|+|+++.++ ...+.. ..+|++|+|+.+--+.-.......+.+|+.|+|+.|.+ .|.+ ...
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~----L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa--~~f 388 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRV----LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA--VAF 388 (873)
T ss_pred hcccceeEeccccccccCChhHHHH----HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch--hhh
Confidence 4555666666655332 223322 23455566555422222222234678888888886654 3322 345
Q ss_pred HcCCCCCEEecccCC
Q 021719 219 DGLQNLEVLNISHCL 233 (308)
Q Consensus 219 ~~~p~L~~L~l~~C~ 233 (308)
.++|.|+.|.+.|..
T Consensus 389 ~gl~~LrkL~l~gNq 403 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQ 403 (873)
T ss_pred ccchhhhheeecCce
Confidence 668889999888764
No 46
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.54 E-value=0.0065 Score=51.26 Aligned_cols=86 Identities=19% Similarity=0.261 Sum_probs=43.0
Q ss_pred CCCCCeeEecCC--CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcCCCCCCChhHHhhh
Q 021719 172 CRNFRELKIMGP--FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKK 249 (308)
Q Consensus 172 ~~~L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~~~~~~~~~~~~~ 249 (308)
.|+|+.|.++.+ -...++..++..+|+|++|++++|.+.+-.-..=++..++|.+|++..|.-... ..
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l----------~d 133 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNL----------DD 133 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcccc----------cc
Confidence 456666666554 222233444455677777777666665311111223456666666666653331 22
Q ss_pred hhHHHHHHHHhhhhhhcc
Q 021719 250 LDRTILQKAARLRKFLTC 267 (308)
Q Consensus 250 ~~~~i~~~~~~l~~~~~c 267 (308)
..+.+.....+|+.+..|
T Consensus 134 yre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 134 YREKVFLLLPSLKYLDGC 151 (260)
T ss_pred HHHHHHHHhhhhcccccc
Confidence 333345555555554444
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.22 E-value=0.0082 Score=48.89 Aligned_cols=86 Identities=16% Similarity=0.174 Sum_probs=42.7
Q ss_pred HhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCH-HHHHHHHhcCCCCcEEEeeCCCCCHHHHH--HHHH
Q 021719 144 IRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDL-LFASTLNMYLPKLKVLSLRCTTLNRDALI--LILD 219 (308)
Q Consensus 144 ~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~-~~~~~l~~~~p~L~~L~L~~~~it~~~l~--~l~~ 219 (308)
+..++.|..|.++++.++. .-..+....|+|+.|.+.++ +.. .++..+ ..||+|++|.+-++.+++..=. .++-
T Consensus 60 lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL-a~~p~L~~Ltll~Npv~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSIQELGDLDPL-ASCPKLEYLTLLGNPVEHKKNYRLYVLY 137 (233)
T ss_pred CCCccccceEEecCCccee-eccchhhhccccceEEecCcchhhhhhcchh-ccCCccceeeecCCchhcccCceeEEEE
Confidence 3455666666666664431 11122233566666666554 111 112222 2566777777666666544321 1222
Q ss_pred cCCCCCEEeccc
Q 021719 220 GLQNLEVLNISH 231 (308)
Q Consensus 220 ~~p~L~~L~l~~ 231 (308)
..|+|+.||...
T Consensus 138 klp~l~~LDF~k 149 (233)
T KOG1644|consen 138 KLPSLRTLDFQK 149 (233)
T ss_pred ecCcceEeehhh
Confidence 356677776654
No 48
>PLN03150 hypothetical protein; Provisional
Probab=95.13 E-value=0.02 Score=55.87 Aligned_cols=83 Identities=18% Similarity=0.269 Sum_probs=59.5
Q ss_pred CCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEE
Q 021719 149 DLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVL 227 (308)
Q Consensus 149 ~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L 227 (308)
.++.|+|+++.+....-..+. .+++|+.|+|+++ +....... ...+++|+.|+|+++.++... ...+..+++|+.|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~-~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCccccCCHHHh-CCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEE
Confidence 377888988866544444444 4899999999887 43222222 348999999999988876432 3345689999999
Q ss_pred ecccCCC
Q 021719 228 NISHCLL 234 (308)
Q Consensus 228 ~l~~C~~ 234 (308)
+|+++..
T Consensus 496 ~Ls~N~l 502 (623)
T PLN03150 496 NLNGNSL 502 (623)
T ss_pred ECcCCcc
Confidence 9998763
No 49
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.07 E-value=0.016 Score=30.01 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=14.3
Q ss_pred CCCCcEEEeeCCCCCHHHHHHHH
Q 021719 196 LPKLKVLSLRCTTLNRDALILIL 218 (308)
Q Consensus 196 ~p~L~~L~L~~~~it~~~l~~l~ 218 (308)
+++|++|+|+++.++++++..+.
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 46777777777777777776654
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.07 E-value=0.0026 Score=61.02 Aligned_cols=102 Identities=19% Similarity=0.211 Sum_probs=60.7
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHH-cCCCCCeeEecCC-CCHHHHHHHHhcCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQ-NCRNFRELKIMGP-FDLLFASTLNMYLP 197 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~-~~~~L~~L~l~~~-~~~~~~~~l~~~~p 197 (308)
-.|.|+.|+|+.. +++.- ..+..|+.|++|||++|.+.. +..+.. .|. |..|.|.++ ++. +.. ..++.
T Consensus 185 ll~ale~LnLshN-k~~~v---~~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc~-L~~L~lrnN~l~t--L~g-ie~Lk 254 (1096)
T KOG1859|consen 185 LLPALESLNLSHN-KFTKV---DNLRRLPKLKHLDLSYNCLRH--VPQLSMVGCK-LQLLNLRNNALTT--LRG-IENLK 254 (1096)
T ss_pred HHHHhhhhccchh-hhhhh---HHHHhcccccccccccchhcc--ccccchhhhh-heeeeecccHHHh--hhh-HHhhh
Confidence 3578999999976 44442 267789999999999985431 112221 243 888888766 221 112 34788
Q ss_pred CCcEEEeeCCCCCHHHHHHHHHcCCCCCEEeccc
Q 021719 198 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISH 231 (308)
Q Consensus 198 ~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~ 231 (308)
+|+.|++++|-+++..=...+-.+..|..|.|.|
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence 8888888877665443222222233444555544
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.06 E-value=0.034 Score=33.65 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=19.0
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCC
Q 021719 122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANP 161 (308)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 161 (308)
++|++|++++. .+++ +...+.++++|+.|+++++.++
T Consensus 1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecCCCCC
Confidence 35666666655 3332 2333556666666666666443
No 52
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.79 E-value=0.026 Score=29.17 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=12.9
Q ss_pred CCCCCEEEeCCCCCChHHHHHHH
Q 021719 147 WRDLESLTMPSIANPPYLMEEIA 169 (308)
Q Consensus 147 ~~~L~~L~l~~~~~~~~~l~~l~ 169 (308)
+++|++|+|++|.++++.+..++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 35666666666666666666554
No 53
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.56 E-value=0.011 Score=50.49 Aligned_cols=87 Identities=13% Similarity=0.019 Sum_probs=65.3
Q ss_pred CCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCC
Q 021719 147 WRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLE 225 (308)
Q Consensus 147 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~ 225 (308)
+.+.+.|++.+|.++|-.+ .+..|.|+.|.|+-+ ++. .+-+..|.+|+.|.|.-|.|.+-.=...+++.|+|+
T Consensus 18 l~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNkIss---L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNKISS---LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHHHH---HHhcccceeEEeecccccc---chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 3467888999998876544 456899999999854 332 223458999999999988888777667788999999
Q ss_pred EEecccCCCcCCCC
Q 021719 226 VLNISHCLLIDVPL 239 (308)
Q Consensus 226 ~L~l~~C~~i~~~~ 239 (308)
.|.|....-....+
T Consensus 92 ~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 92 TLWLDENPCCGEAG 105 (388)
T ss_pred hHhhccCCcccccc
Confidence 99998765554444
No 54
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=93.26 E-value=0.13 Score=27.66 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=19.7
Q ss_pred CCCcEEEeeCCCCCHHHHHHHHHc
Q 021719 197 PKLKVLSLRCTTLNRDALILILDG 220 (308)
Q Consensus 197 p~L~~L~L~~~~it~~~l~~l~~~ 220 (308)
++|++|+|++|.+++++...+.+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 578899999999998888877654
No 55
>PF13013 F-box-like_2: F-box-like domain
Probab=93.26 E-value=0.13 Score=37.79 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=26.5
Q ss_pred cCCCCHHHHHHHhcCCChHHHhhHHhHhhH
Q 021719 11 WEDLDNDILVKIFQSFDIFELTSGIAHVCS 40 (308)
Q Consensus 11 ~~~LP~eiL~~If~~L~~~d~~~~~s~VCr 40 (308)
+.+||.||+..||.+-+..+... ++..|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~-l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLA-LSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHH-HHHHHH
Confidence 78899999999999999999988 788887
No 56
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=93.22 E-value=0.047 Score=47.36 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=48.2
Q ss_pred cCCCCCEEEeCCCCCC--hHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCC
Q 021719 146 MWRDLESLTMPSIANP--PYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQ 222 (308)
Q Consensus 146 ~~~~L~~L~l~~~~~~--~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p 222 (308)
.+.-|++||++++.++ +++++ -.|+++.|.++.+ +...+ . ...+++|++|+|++|.++. +.-+-....
T Consensus 282 TWq~LtelDLS~N~I~~iDESvK----L~Pkir~L~lS~N~i~~v~--n-La~L~~L~~LDLS~N~Ls~--~~Gwh~KLG 352 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVK----LAPKLRRLILSQNRIRTVQ--N-LAELPQLQLLDLSGNLLAE--CVGWHLKLG 352 (490)
T ss_pred hHhhhhhccccccchhhhhhhhh----hccceeEEeccccceeeeh--h-hhhcccceEeecccchhHh--hhhhHhhhc
Confidence 5677888888888543 34443 3588888888876 32211 1 2368888888888877653 112223445
Q ss_pred CCCEEecccCC
Q 021719 223 NLEVLNISHCL 233 (308)
Q Consensus 223 ~L~~L~l~~C~ 233 (308)
|++.|.+++..
T Consensus 353 NIKtL~La~N~ 363 (490)
T KOG1259|consen 353 NIKTLKLAQNK 363 (490)
T ss_pred CEeeeehhhhh
Confidence 56666555443
No 57
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=93.08 E-value=0.015 Score=55.28 Aligned_cols=107 Identities=19% Similarity=0.103 Sum_probs=59.7
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCC
Q 021719 121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL 199 (308)
Q Consensus 121 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L 199 (308)
...|-.|+|+... -+.+..-++.+..|++|+|+++.+....+.++-. ...|+.|++++- -+-..+..-...+.+|
T Consensus 149 LtDLLfLDLS~Nr---Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs-mtsL~vLhms~TqRTl~N~Ptsld~l~NL 224 (1255)
T KOG0444|consen 149 LTDLLFLDLSNNR---LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPS-MTSLSVLHMSNTQRTLDNIPTSLDDLHNL 224 (1255)
T ss_pred hHhHhhhccccch---hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCcc-chhhhhhhcccccchhhcCCCchhhhhhh
Confidence 3445555555431 1223334456667888888877655444544332 345556666543 1111111223467788
Q ss_pred cEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 200 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 200 ~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
+.+++++|.++. +..-+-..++|+.|++++..
T Consensus 225 ~dvDlS~N~Lp~--vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 225 RDVDLSENNLPI--VPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred hhccccccCCCc--chHHHhhhhhhheeccCcCc
Confidence 888998887652 22333456889999998765
No 58
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=92.83 E-value=0.069 Score=52.89 Aligned_cols=102 Identities=18% Similarity=0.206 Sum_probs=66.8
Q ss_pred CCccEEEccCCC--CCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCC
Q 021719 96 GSIRTLIFHFNL--YVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR 173 (308)
Q Consensus 96 ~~l~~l~l~~~~--~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~ 173 (308)
.+++.+++.+++ .+.+..+. +.+.|++|.|++. +++. +...+..|+.|+.|...++.+. .+..+++ .|
T Consensus 383 ~hLKVLhLsyNrL~~fpas~~~----kle~LeeL~LSGN-kL~~--Lp~tva~~~~L~tL~ahsN~l~--~fPe~~~-l~ 452 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLNSFPASKLR----KLEELEELNLSGN-KLTT--LPDTVANLGRLHTLRAHSNQLL--SFPELAQ-LP 452 (1081)
T ss_pred cceeeeeecccccccCCHHHHh----chHHhHHHhcccc-hhhh--hhHHHHhhhhhHHHhhcCCcee--echhhhh-cC
Confidence 466777776652 23344333 4568999999986 3332 4456678889999988887543 2224443 78
Q ss_pred CCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCC
Q 021719 174 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTT 208 (308)
Q Consensus 174 ~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~ 208 (308)
.|+.++++++ ++...+.... .-|+|++|+|+||.
T Consensus 453 qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 453 QLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred cceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 9999999876 4443333322 22799999999876
No 59
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=92.21 E-value=0.19 Score=50.88 Aligned_cols=106 Identities=21% Similarity=0.204 Sum_probs=56.5
Q ss_pred hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCC--hHHHHHHHHcCCCCCeeEecCCCCHHHHHHHHhcC
Q 021719 119 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANP--PYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYL 196 (308)
Q Consensus 119 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~--~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~ 196 (308)
...|.|+.|+|+++...+ .+...++.+-+|+.|++++..+. +..+. ..++|.+|++...-.-.....+...+
T Consensus 568 ~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t~I~~LP~~l~----~Lk~L~~Lnl~~~~~l~~~~~i~~~L 641 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDTGISHLPSGLG----NLKKLIYLNLEVTGRLESIPGILLEL 641 (889)
T ss_pred hhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCCCccccchHHH----HHHhhheeccccccccccccchhhhc
Confidence 346777777777653332 23444555567777777766544 22222 24466777765431111123344468
Q ss_pred CCCcEEEeeCCC--CCHHHHHHHHHcCCCCCEEeccc
Q 021719 197 PKLKVLSLRCTT--LNRDALILILDGLQNLEVLNISH 231 (308)
Q Consensus 197 p~L~~L~L~~~~--it~~~l~~l~~~~p~L~~L~l~~ 231 (308)
++||+|.+.+.. .+...+.. +....+|+.|.+..
T Consensus 642 ~~Lr~L~l~~s~~~~~~~~l~e-l~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 642 QSLRVLRLPRSALSNDKLLLKE-LENLEHLENLSITI 677 (889)
T ss_pred ccccEEEeeccccccchhhHHh-hhcccchhhheeec
Confidence 899999988544 22323333 34555566555543
No 60
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.85 E-value=0.14 Score=48.11 Aligned_cols=141 Identities=16% Similarity=0.145 Sum_probs=70.6
Q ss_pred CCccEEEccCCCCCCHHHHHHHHhhC----CCCcEEEcCCCCCCCHHH---HHHHHhcCCCCCEEEeCCCCCChHHHHHH
Q 021719 96 GSIRTLIFHFNLYVSDDQLTYTAERC----PQLKRLVMPAWNRIKKTG---ICKAIRMWRDLESLTMPSIANPPYLMEEI 168 (308)
Q Consensus 96 ~~l~~l~l~~~~~~~d~~l~~l~~~~----~~L~~L~L~~~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~l~~l 168 (308)
..+..+.++++. +++.....+.... ..|+.|.+..| .++..+ +...+.....|+++++..|.+.......+
T Consensus 115 ~~L~~L~l~~n~-l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l 192 (478)
T KOG4308|consen 115 PTLGQLDLSGNN-LGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVL 192 (478)
T ss_pred ccHhHhhcccCC-CccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHHHhcccchhHHHHHhcccchhhhHHH
Confidence 344455555543 3355554444332 23455555555 333332 33334445666666776664433333222
Q ss_pred HHc-------CCCCCeeEecCC-CCHHHHHHHH---hcCCC-CcEEEeeCCCCCHHHHHHHHHcC----CCCCEEecccC
Q 021719 169 AQN-------CRNFRELKIMGP-FDLLFASTLN---MYLPK-LKVLSLRCTTLNRDALILILDGL----QNLEVLNISHC 232 (308)
Q Consensus 169 ~~~-------~~~L~~L~l~~~-~~~~~~~~l~---~~~p~-L~~L~L~~~~it~~~l~~l~~~~----p~L~~L~l~~C 232 (308)
.+. ..++++|++.++ ++......+. ...+. ++.|++.++.+.|.++..+.... +.++.+++..|
T Consensus 193 ~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n 272 (478)
T KOG4308|consen 193 SQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRN 272 (478)
T ss_pred hhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcC
Confidence 221 235667777665 4444333332 23333 55566666777766666555543 34467777766
Q ss_pred CCcCCC
Q 021719 233 LLIDVP 238 (308)
Q Consensus 233 ~~i~~~ 238 (308)
...+.+
T Consensus 273 si~~~~ 278 (478)
T KOG4308|consen 273 SITEKG 278 (478)
T ss_pred Cccccc
Confidence 655543
No 61
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=90.67 E-value=0.18 Score=45.35 Aligned_cols=86 Identities=20% Similarity=0.140 Sum_probs=47.4
Q ss_pred HHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCCCCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcC
Q 021719 142 KAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGL 221 (308)
Q Consensus 142 ~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~ 221 (308)
..++.+|+|+.|+++++.++.-.-.++. ....++.|.+..+--...-..+..++.+|+.|+|.+|+||--+-.+ ++..
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe-~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a-F~~~ 345 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFE-GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA-FQTL 345 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhc-chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc-cccc
Confidence 3466778888888887765532222222 2446777777655211222234457777888888777765332221 2334
Q ss_pred CCCCEEec
Q 021719 222 QNLEVLNI 229 (308)
Q Consensus 222 p~L~~L~l 229 (308)
..|.+|++
T Consensus 346 ~~l~~l~l 353 (498)
T KOG4237|consen 346 FSLSTLNL 353 (498)
T ss_pred ceeeeeeh
Confidence 45555555
No 62
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=90.53 E-value=0.11 Score=49.54 Aligned_cols=44 Identities=20% Similarity=0.474 Sum_probs=37.8
Q ss_pred cCCCCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhccC-CCcceee
Q 021719 11 WEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCD-PLLWKTL 55 (308)
Q Consensus 11 ~~~LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~-p~lw~~i 55 (308)
+.-||.|+...||.+|+.++++. +++||+.|+.++.+ +..|+..
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~-~~~v~~~w~~~~~~~~~~~~~~ 152 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLA-VRQVCRNWNKLLDDDKVWWRMC 152 (537)
T ss_pred hhcccchhcccccccCCHHHhhh-hhhhcchhhhhhhccchhhhhh
Confidence 36799999999999999999999 99999999999987 4455433
No 63
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=89.32 E-value=0.36 Score=48.07 Aligned_cols=11 Identities=27% Similarity=0.510 Sum_probs=5.7
Q ss_pred CCCcEEEcCCC
Q 021719 122 PQLKRLVMPAW 132 (308)
Q Consensus 122 ~~L~~L~L~~~ 132 (308)
++|++|+++++
T Consensus 242 ~~Lk~LdLs~N 252 (788)
T PRK15387 242 PELRTLEVSGN 252 (788)
T ss_pred CCCcEEEecCC
Confidence 45555555543
No 64
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.25 E-value=0.66 Score=24.89 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=16.0
Q ss_pred CCCCEEEeCCCCCChHHHHHHHHc
Q 021719 148 RDLESLTMPSIANPPYLMEEIAQN 171 (308)
Q Consensus 148 ~~L~~L~l~~~~~~~~~l~~l~~~ 171 (308)
+.|++|+|++|.++++...++++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 456777777777777666666553
No 65
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=89.21 E-value=0.76 Score=45.86 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=29.0
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC
Q 021719 122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP 183 (308)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 183 (308)
++|+.|.+... .++. +-...++|++|++++|.++.- . ...++|+.|++.++
T Consensus 222 ~~L~~L~L~~N-~Lt~-----LP~lp~~Lk~LdLs~N~LtsL--P---~lp~sL~~L~Ls~N 272 (788)
T PRK15387 222 AHITTLVIPDN-NLTS-----LPALPPELRTLEVSGNQLTSL--P---VLPPGLLELSIFSN 272 (788)
T ss_pred cCCCEEEccCC-cCCC-----CCCCCCCCcEEEecCCccCcc--c---CcccccceeeccCC
Confidence 46788887764 3332 112357899999988855421 1 11345666655543
No 66
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.42 E-value=0.15 Score=48.03 Aligned_cols=87 Identities=20% Similarity=0.224 Sum_probs=41.9
Q ss_pred CCCCCEEEeCCCCCChHHHHHHHHcC---CC-CCeeEecCC-CCHHHHHHHHhcCC----CCcEEEeeCCCCCHHHHHH-
Q 021719 147 WRDLESLTMPSIANPPYLMEEIAQNC---RN-FRELKIMGP-FDLLFASTLNMYLP----KLKVLSLRCTTLNRDALIL- 216 (308)
Q Consensus 147 ~~~L~~L~l~~~~~~~~~l~~l~~~~---~~-L~~L~l~~~-~~~~~~~~l~~~~p----~L~~L~L~~~~it~~~l~~- 216 (308)
..++++|.+.+|.++......+.... +. +..|++..+ +.|.++..+.+.++ .++++++..+.+++.+...
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 34566666666655544443333322 22 333445443 44444444443332 3356666655555544332
Q ss_pred --HHHcCCCCCEEecccCC
Q 021719 217 --ILDGLQNLEVLNISHCL 233 (308)
Q Consensus 217 --l~~~~p~L~~L~l~~C~ 233 (308)
.+..|+.++.|.+..-.
T Consensus 283 ~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred HHHHhhhHHHHHhhcccCc
Confidence 33345566666665433
No 67
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=88.38 E-value=0.34 Score=39.70 Aligned_cols=84 Identities=14% Similarity=0.210 Sum_probs=53.9
Q ss_pred cCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCC
Q 021719 146 MWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNL 224 (308)
Q Consensus 146 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L 224 (308)
...+...++++.+.+.. +.. .-+.++|.+|.++.+ ++.- ...+...+|+|+.|.|.+|.+-.-+=..=+..||+|
T Consensus 40 ~~d~~d~iDLtdNdl~~--l~~-lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLRK--LDN-LPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred cccccceecccccchhh--ccc-CCCccccceEEecCCcceee-ccchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence 34567778887764321 111 125678999999876 3321 112445689999999998887544422334579999
Q ss_pred CEEecccCC
Q 021719 225 EVLNISHCL 233 (308)
Q Consensus 225 ~~L~l~~C~ 233 (308)
++|.+-+..
T Consensus 116 ~~Ltll~Np 124 (233)
T KOG1644|consen 116 EYLTLLGNP 124 (233)
T ss_pred ceeeecCCc
Confidence 999987644
No 68
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=88.37 E-value=0.91 Score=42.71 Aligned_cols=88 Identities=16% Similarity=0.225 Sum_probs=48.2
Q ss_pred HHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCC--CCC-hHHHHHHHHcCCCCCeeEecCC-C-----
Q 021719 114 LTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI--ANP-PYLMEEIAQNCRNFRELKIMGP-F----- 184 (308)
Q Consensus 114 l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~-~~~l~~l~~~~~~L~~L~l~~~-~----- 184 (308)
+..+..+.|.+..++|+...-..-+++..+....|+|+.|+|+++ .+. ..-+..+ ....|++|-+.|+ +
T Consensus 210 L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 210 LKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred HHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchh
Confidence 445555667777777776544455566666677777777777766 221 1122222 2345666666654 1
Q ss_pred -CHHHHHHHHhcCCCCcEEE
Q 021719 185 -DLLFASTLNMYLPKLKVLS 203 (308)
Q Consensus 185 -~~~~~~~l~~~~p~L~~L~ 203 (308)
..+.+.++.+.+|+|..|+
T Consensus 288 ~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 288 DRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhHHHHHHHHHhcchheeec
Confidence 1233445555666666653
No 69
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=88.25 E-value=0.29 Score=25.84 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=18.3
Q ss_pred CCcEEEeeCCCCCH-HHHHHHHHcCC
Q 021719 198 KLKVLSLRCTTLNR-DALILILDGLQ 222 (308)
Q Consensus 198 ~L~~L~L~~~~it~-~~l~~l~~~~p 222 (308)
+|+.|.|....+.+ ..+..++.+||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 47888888666554 46888888887
No 70
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=88.24 E-value=0.13 Score=47.50 Aligned_cols=107 Identities=19% Similarity=0.161 Sum_probs=66.8
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCC
Q 021719 121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL 199 (308)
Q Consensus 121 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L 199 (308)
..+|+.|++... .+ ..+......+++|+.|+++++.+++ +..+. .++.|+.|.+.++ +.... -...+++|
T Consensus 94 ~~~l~~l~l~~n-~i--~~i~~~l~~~~~L~~L~ls~N~I~~--i~~l~-~l~~L~~L~l~~N~i~~~~---~~~~l~~L 164 (414)
T KOG0531|consen 94 LKSLEALDLYDN-KI--EKIENLLSSLVNLQVLDLSFNKITK--LEGLS-TLTLLKELNLSGNLISDIS---GLESLKSL 164 (414)
T ss_pred ccceeeeecccc-ch--hhcccchhhhhcchheecccccccc--ccchh-hccchhhheeccCcchhcc---CCccchhh
Confidence 466777777754 22 2233336678888899988886642 22222 2455888888776 33211 11237888
Q ss_pred cEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcCC
Q 021719 200 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV 237 (308)
Q Consensus 200 ~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~ 237 (308)
+.++++++.+++..-.. ...+.+|+.+.+.+......
T Consensus 165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI 201 (414)
T ss_pred hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence 88888888776554322 46778888888887765554
No 71
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=87.57 E-value=0.17 Score=49.14 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=14.9
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHH
Q 021719 121 CPQLKRLVMPAWNRIKKTGICKAI 144 (308)
Q Consensus 121 ~~~L~~L~L~~~~~~~~~~l~~~~ 144 (308)
...|+.|.|.+|.--+..|+..+-
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr 131 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELR 131 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHH
Confidence 457788888877555555544443
No 72
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=87.44 E-value=0.34 Score=49.10 Aligned_cols=110 Identities=21% Similarity=0.154 Sum_probs=61.1
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
.||.|++|-+.....--...-..++..+|.|..||+++|.-.......|+. +-+|+.|++++. +. .+..-...+..
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL~L~~t~I~--~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYLDLSDTGIS--HLPSGLGNLKK 619 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhhcccccCCCcc--ccchHHHHHHh
Confidence 466777777665421011112234567788888888876433333344442 557778887765 32 11222346677
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
|.+|++..+..-. .+..+....++|++|.+..-.
T Consensus 620 L~~Lnl~~~~~l~-~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 620 LIYLNLEVTGRLE-SIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hheeccccccccc-cccchhhhcccccEEEeeccc
Confidence 8888887433111 113444557888988886543
No 73
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.43 E-value=0.7 Score=41.95 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=31.6
Q ss_pred hcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 194 MYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 194 ~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
..+.+|..|+|..+.+. .+..++.+|.+|++|++.|..
T Consensus 502 ~nm~nL~tLDL~nNdlq--~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 502 KNMRNLTTLDLQNNDLQ--QIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhhhcceeccCCCchh--hCChhhccccceeEEEecCCc
Confidence 47889999999987763 466788999999999999864
No 74
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=85.88 E-value=0.41 Score=36.92 Aligned_cols=103 Identities=15% Similarity=0.199 Sum_probs=48.6
Q ss_pred CcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEE
Q 021719 124 LKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVL 202 (308)
Q Consensus 124 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L 202 (308)
+..++|+.|.-..-......+..-..|+..+++++.+- ..-+.+....|-++.|++..+ +.+-. ..+ ..+|.|+.|
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvP-eE~-Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVP-EEL-AAMPALRSL 105 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhch-HHH-hhhHHhhhc
Confidence 55566666633322222223333444555566655321 122244444556677777655 32211 122 367777777
Q ss_pred EeeCCCCCHHHHHHHHHcCCCCCEEeccc
Q 021719 203 SLRCTTLNRDALILILDGLQNLEVLNISH 231 (308)
Q Consensus 203 ~L~~~~it~~~l~~l~~~~p~L~~L~l~~ 231 (308)
+++.|.+.... ..+..+.+|-.|+..+
T Consensus 106 Nl~~N~l~~~p--~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 106 NLRFNPLNAEP--RVIAPLIKLDMLDSPE 132 (177)
T ss_pred ccccCccccch--HHHHHHHhHHHhcCCC
Confidence 77766654321 2222244455555443
No 75
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=84.62 E-value=0.77 Score=32.99 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.8
Q ss_pred CCcCCCCHHHHHHHhcCCChHHHhh
Q 021719 9 RRWEDLDNDILVKIFQSFDIFELTS 33 (308)
Q Consensus 9 ~~~~~LP~eiL~~If~~L~~~d~~~ 33 (308)
..|..||.||-..|+++|+..|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5699999999999999999998864
No 76
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=82.66 E-value=2.1 Score=42.83 Aligned_cols=77 Identities=13% Similarity=0.121 Sum_probs=36.6
Q ss_pred CCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCH--HHHHHHHHcCCCC
Q 021719 148 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNR--DALILILDGLQNL 224 (308)
Q Consensus 148 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~--~~l~~l~~~~p~L 224 (308)
++|+.|++++|.++. .-..+ .++|+.|+++++ +.. ....+. +.|+.|+++++.++. ..+..+...+|++
T Consensus 346 ~sL~~L~Ls~N~L~~-LP~~l---p~~L~~LdLs~N~Lt~-LP~~l~---~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l 417 (754)
T PRK15370 346 PELQVLDVSKNQITV-LPETL---PPTITTLDVSRNALTN-LPENLP---AALQIMQASRNNLVRLPESLPHFRGEGPQP 417 (754)
T ss_pred CcccEEECCCCCCCc-CChhh---cCCcCEEECCCCcCCC-CCHhHH---HHHHHHhhccCCcccCchhHHHHhhcCCCc
Confidence 566777776664431 00111 246666766655 221 000111 245566666555441 2344444445666
Q ss_pred CEEecccC
Q 021719 225 EVLNISHC 232 (308)
Q Consensus 225 ~~L~l~~C 232 (308)
..|++.+.
T Consensus 418 ~~L~L~~N 425 (754)
T PRK15370 418 TRIIVEYN 425 (754)
T ss_pred cEEEeeCC
Confidence 66666553
No 77
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=82.28 E-value=0.07 Score=42.57 Aligned_cols=101 Identities=20% Similarity=0.183 Sum_probs=55.7
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC---CCHHHHHHHHhcCCC
Q 021719 122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP---FDLLFASTLNMYLPK 198 (308)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~---~~~~~~~~l~~~~p~ 198 (308)
.++..|.|+.. +++. +..-+..+.+|+.|.+.++.+. +.-.+++ ..|+|+.|++.-+ .-+.+ ..++|.
T Consensus 33 s~ITrLtLSHN-Kl~~--vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~~lprg----fgs~p~ 103 (264)
T KOG0617|consen 33 SNITRLTLSHN-KLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLNILPRG----FGSFPA 103 (264)
T ss_pred hhhhhhhcccC-ceee--cCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhhcCccc----cCCCch
Confidence 45566666654 2211 1122335568888888877543 2222333 4688888887633 11111 236888
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEeccc
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISH 231 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~ 231 (308)
|+.|+|.+++++...+..=+-.+..|+-|.+++
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~d 136 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD 136 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcC
Confidence 899998888777665443222334455555554
No 78
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=81.89 E-value=0.71 Score=39.29 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=40.2
Q ss_pred CCCcccCCCcCCCCHHHHHHHhcCCC-hHHHhhHHhHhhHHHHHhccCCCcceee
Q 021719 2 EESASTVRRWEDLDNDILVKIFQSFD-IFELTSGIAHVCSSWRSACCDPLLWKTL 55 (308)
Q Consensus 2 ~~~~~~~~~~~~LP~eiL~~If~~L~-~~d~~~~~s~VCr~Wr~~~~~p~lw~~i 55 (308)
++..+.+..+.+||.|++..|+..++ .+|+.. +++|-..-..+..+..+|+.+
T Consensus 193 ~~~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s-~aqa~etl~~l~~e~~iWkkL 246 (332)
T KOG3926|consen 193 TEPDPAGLTLHDLPLECVLNILLRLSDHRDLES-LAQAWETLAKLSEERRIWKKL 246 (332)
T ss_pred cCCCcCCCCcccchHHHHHHHHHHccCcchHHH-HHHhhHHHHHHHHHHHHHHHH
Confidence 44445567899999999999999885 688888 888776666666556677755
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=81.46 E-value=1.2 Score=20.81 Aligned_cols=12 Identities=33% Similarity=0.457 Sum_probs=5.9
Q ss_pred CCCCEEecccCC
Q 021719 222 QNLEVLNISHCL 233 (308)
Q Consensus 222 p~L~~L~l~~C~ 233 (308)
++|+.|+|++|.
T Consensus 1 ~~L~~L~l~~n~ 12 (17)
T PF13504_consen 1 PNLRTLDLSNNR 12 (17)
T ss_dssp TT-SEEEETSS-
T ss_pred CccCEEECCCCC
Confidence 356666666665
No 80
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=79.93 E-value=0.62 Score=35.94 Aligned_cols=62 Identities=15% Similarity=0.005 Sum_probs=28.5
Q ss_pred HHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCCCCHHHHHHHHhcCCCCcEEEeeCC
Q 021719 143 AIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCT 207 (308)
Q Consensus 143 ~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~ 207 (308)
+..++|.++.|++..+.+++--.+ ++ ..|.|+.|++..+.-......+++ +.+|-.|+...+
T Consensus 72 ft~kf~t~t~lNl~~neisdvPeE-~A-am~aLr~lNl~~N~l~~~p~vi~~-L~~l~~Lds~~n 133 (177)
T KOG4579|consen 72 FTIKFPTATTLNLANNEISDVPEE-LA-AMPALRSLNLRFNPLNAEPRVIAP-LIKLDMLDSPEN 133 (177)
T ss_pred HhhccchhhhhhcchhhhhhchHH-Hh-hhHHhhhcccccCccccchHHHHH-HHhHHHhcCCCC
Confidence 344555666666666544432222 33 245666666655422222233332 444455555443
No 81
>PRK15386 type III secretion protein GogB; Provisional
Probab=78.78 E-value=2.4 Score=39.03 Aligned_cols=116 Identities=17% Similarity=0.105 Sum_probs=57.4
Q ss_pred CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCC-CCChHHHHHHHHcCCC
Q 021719 96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQNCRN 174 (308)
Q Consensus 96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~l~~l~~~~~~ 174 (308)
..++.|.++.|. +..+-.--++|++|.+.+|..++. +...+ .++|+.|++++| .+. .--+.
T Consensus 52 ~~l~~L~Is~c~------L~sLP~LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~--------sLP~s 113 (426)
T PRK15386 52 RASGRLYIKDCD------IESLPVLPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEIS--------GLPES 113 (426)
T ss_pred cCCCEEEeCCCC------CcccCCCCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCccccc--------ccccc
Confidence 567777776552 122222223588888887765422 11111 247888888877 332 11246
Q ss_pred CCeeEecCCCCHHHHHHHHhcC-CCCcEEEeeCCC-CCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 175 FRELKIMGPFDLLFASTLNMYL-PKLKVLSLRCTT-LNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 175 L~~L~l~~~~~~~~~~~l~~~~-p~L~~L~L~~~~-it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
|+.|.+.+.... .+ ..+ ++|+.|.+.... .....+.. .-.++|++|++++|..+.
T Consensus 114 Le~L~L~~n~~~----~L-~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~ 170 (426)
T PRK15386 114 VRSLEIKGSATD----SI-KNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII 170 (426)
T ss_pred cceEEeCCCCCc----cc-ccCcchHhheecccccccccccccc--ccCCcccEEEecCCCccc
Confidence 777777543111 11 123 356666664211 11111000 012467777777777554
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=78.64 E-value=5.4 Score=37.75 Aligned_cols=89 Identities=16% Similarity=0.039 Sum_probs=62.7
Q ss_pred HHhcCCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCC------hHH
Q 021719 91 LSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANP------PYL 164 (308)
Q Consensus 91 ~~~s~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~------~~~ 164 (308)
...-.+.+..+.+..++-..-+.+..++...|+|+.|+|++....-......---+...|++|-+.++.+. .+-
T Consensus 213 ~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 213 IEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred hhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHH
Confidence 34445566777777776677788889999999999999998622222222222335678999999998542 355
Q ss_pred HHHHHHcCCCCCeeE
Q 021719 165 MEEIAQNCRNFRELK 179 (308)
Q Consensus 165 l~~l~~~~~~L~~L~ 179 (308)
+.+|....|+|..|+
T Consensus 293 v~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 293 VSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHhcchheeec
Confidence 677778889998886
No 83
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.48 E-value=0.39 Score=43.53 Aligned_cols=19 Identities=37% Similarity=0.272 Sum_probs=9.8
Q ss_pred HHhcCCCCcEEEeeCCCCC
Q 021719 192 LNMYLPKLKVLSLRCTTLN 210 (308)
Q Consensus 192 l~~~~p~L~~L~L~~~~it 210 (308)
+.+++++|..|+|+.++++
T Consensus 247 ~~~~L~~l~vLDLRdNklk 265 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDNKLK 265 (565)
T ss_pred Hhcccccceeeeccccccc
Confidence 3445555555555555443
No 84
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=78.13 E-value=0.064 Score=42.77 Aligned_cols=108 Identities=19% Similarity=0.059 Sum_probs=53.4
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCCCCHHHHHHHHhcCCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKL 199 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~p~L 199 (308)
..|.|+.|++...... .+..-++.+|-|+.||+.++.++...+..=......|+.|.++.+-- +.+..-...+.+|
T Consensus 77 sl~klr~lnvgmnrl~---~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~l 152 (264)
T KOG0617|consen 77 SLPKLRILNVGMNRLN---ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNL 152 (264)
T ss_pred hchhhhheecchhhhh---cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcce
Confidence 3566777766643111 11223456777777777777544332211111122344444443300 0000112367888
Q ss_pred cEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 200 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 200 ~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
+.|.+..+.+- .+..-+.....|++|.|.+..
T Consensus 153 qil~lrdndll--~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 153 QILSLRDNDLL--SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred eEEeeccCchh--hCcHHHHHHHHHHHHhcccce
Confidence 88888866531 122223345668888887754
No 85
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=73.99 E-value=8.7 Score=34.07 Aligned_cols=94 Identities=12% Similarity=0.133 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCCCCCEEEeCCC-CCChHHHHHHHHcCCCCCe---eEecCC-CCHHH---HHHHHhcCCCCcEEEeeCCC
Q 021719 137 KTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQNCRNFRE---LKIMGP-FDLLF---ASTLNMYLPKLKVLSLRCTT 208 (308)
Q Consensus 137 ~~~l~~~~~~~~~L~~L~l~~~-~~~~~~l~~l~~~~~~L~~---L~l~~~-~~~~~---~~~l~~~~p~L~~L~L~~~~ 208 (308)
+..+..+-..=|.|+++.+... .++...+..+.....+=++ ..+.+- .++.. +..+.+.++.|++|++.++.
T Consensus 187 e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnF 266 (353)
T KOG3735|consen 187 ESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNF 266 (353)
T ss_pred HHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccc
Confidence 3445555556678888888877 5777777777765544333 333322 33333 33445778999999999999
Q ss_pred CCHHHHHHHHHcCC---CCCEEecc
Q 021719 209 LNRDALILILDGLQ---NLEVLNIS 230 (308)
Q Consensus 209 it~~~l~~l~~~~p---~L~~L~l~ 230 (308)
||..++.+++.... .|..|.+.
T Consensus 267 Itg~gi~a~~~al~~n~tl~el~~d 291 (353)
T KOG3735|consen 267 ITGLGIMALLRALQSNKSLTELKND 291 (353)
T ss_pred cccHHHHHHHHHHhccchhhHhhhh
Confidence 99999998887643 44444443
No 86
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=73.58 E-value=6.2 Score=39.53 Aligned_cols=88 Identities=10% Similarity=0.076 Sum_probs=55.4
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CC--HHHHHHHHhcCC
Q 021719 121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FD--LLFASTLNMYLP 197 (308)
Q Consensus 121 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~--~~~~~~l~~~~p 197 (308)
+++|+.|+++++. ++. +...+ .++|+.|++++|.+.. ....+. +.|+.|+++++ +. +..+......+|
T Consensus 345 ~~sL~~L~Ls~N~-L~~--LP~~l--p~~L~~LdLs~N~Lt~-LP~~l~---~sL~~LdLs~N~L~~LP~sl~~~~~~~~ 415 (754)
T PRK15370 345 PPELQVLDVSKNQ-ITV--LPETL--PPTITTLDVSRNALTN-LPENLP---AALQIMQASRNNLVRLPESLPHFRGEGP 415 (754)
T ss_pred cCcccEEECCCCC-CCc--CChhh--cCCcCEEECCCCcCCC-CCHhHH---HHHHHHhhccCCcccCchhHHHHhhcCC
Confidence 3689999998873 331 11111 3689999999996542 111111 24677777665 22 123344445679
Q ss_pred CCcEEEeeCCCCCHHHHHHH
Q 021719 198 KLKVLSLRCTTLNRDALILI 217 (308)
Q Consensus 198 ~L~~L~L~~~~it~~~l~~l 217 (308)
++..|+|.+|.++...+..+
T Consensus 416 ~l~~L~L~~Npls~~tl~~L 435 (754)
T PRK15370 416 QPTRIIVEYNPFSERTIQNM 435 (754)
T ss_pred CccEEEeeCCCccHHHHHHH
Confidence 99999999999987776654
No 87
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=71.92 E-value=2.1 Score=21.32 Aligned_cols=13 Identities=38% Similarity=0.465 Sum_probs=10.3
Q ss_pred CCCEEecccCCCcC
Q 021719 223 NLEVLNISHCLLID 236 (308)
Q Consensus 223 ~L~~L~l~~C~~i~ 236 (308)
+|++|+|++| .++
T Consensus 1 ~L~~Ldls~n-~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGN-NLT 13 (22)
T ss_dssp TESEEEETSS-EES
T ss_pred CccEEECCCC-cCE
Confidence 5889999998 555
No 88
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=71.30 E-value=2.3 Score=38.84 Aligned_cols=38 Identities=29% Similarity=0.331 Sum_probs=20.1
Q ss_pred cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021719 195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 235 (308)
Q Consensus 195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i 235 (308)
.+++|+.|+++++.+++..- +....+|+.|++++-...
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccccceecccccccccccc---ccccCccCEEeccCcccc
Confidence 45556666666555554332 344556666666554433
No 89
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=70.96 E-value=1.2 Score=41.31 Aligned_cols=107 Identities=22% Similarity=0.233 Sum_probs=68.5
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
.+..++.+.+... .+.. +...+..+.+|+.|++..+.+. -+..+...+++|+.|+++++ +++-.. ...++.
T Consensus 70 ~l~~l~~l~l~~n-~i~~--~~~~l~~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~ 141 (414)
T KOG0531|consen 70 SLTSLKELNLRQN-LIAK--ILNHLSKLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNKITKLEG---LSTLTL 141 (414)
T ss_pred HhHhHHhhccchh-hhhh--hhcccccccceeeeeccccchh--hcccchhhhhcchheeccccccccccc---hhhccc
Confidence 4455666654422 1211 2334567789999999888543 22221335899999999987 443211 235677
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcCC
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV 237 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~ 237 (308)
|+.|++.+|.+++.. -+..++.|+.++++++.....
T Consensus 142 L~~L~l~~N~i~~~~---~~~~l~~L~~l~l~~n~i~~i 177 (414)
T KOG0531|consen 142 LKELNLSGNLISDIS---GLESLKSLKLLDLSYNRIVDI 177 (414)
T ss_pred hhhheeccCcchhcc---CCccchhhhcccCCcchhhhh
Confidence 999999999887543 123378899999998876554
No 90
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=66.68 E-value=4.3 Score=36.00 Aligned_cols=51 Identities=22% Similarity=0.399 Sum_probs=39.3
Q ss_pred CCcCCCCHHHHHHHhcCCChHH-------HhhHHhHhhHHHHHhccC----CCcceeeeccc
Q 021719 9 RRWEDLDNDILVKIFQSFDIFE-------LTSGIAHVCSSWRSACCD----PLLWKTLDLSM 59 (308)
Q Consensus 9 ~~~~~LP~eiL~~If~~L~~~d-------~~~~~s~VCr~Wr~~~~~----p~lw~~i~l~~ 59 (308)
..|.+||.|.|..|.....-.+ .+..++-||+.|+..+.. |..|..+++..
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~ 104 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPA 104 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccchhH
Confidence 4789999999999998874332 233389999999998753 77888777764
No 91
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=66.67 E-value=3.1 Score=37.84 Aligned_cols=86 Identities=15% Similarity=0.179 Sum_probs=55.2
Q ss_pred HhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcC
Q 021719 118 AERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYL 196 (308)
Q Consensus 118 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~ 196 (308)
.+..|+|+.|+|++. +++.-. ...+.....|++|.|..+.+. .+-..+.+....|+.|++.++ ++-... ...+.+
T Consensus 270 f~~L~~L~~lnlsnN-~i~~i~-~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~-~aF~~~ 345 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNN-KITRIE-DGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAP-GAFQTL 345 (498)
T ss_pred HhhcccceEeccCCC-ccchhh-hhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEec-cccccc
Confidence 345799999999986 444321 344556778999999888543 222333446788999999886 321111 112467
Q ss_pred CCCcEEEeeCC
Q 021719 197 PKLKVLSLRCT 207 (308)
Q Consensus 197 p~L~~L~L~~~ 207 (308)
..|..|.|-.|
T Consensus 346 ~~l~~l~l~~N 356 (498)
T KOG4237|consen 346 FSLSTLNLLSN 356 (498)
T ss_pred ceeeeeehccC
Confidence 78888888643
No 92
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=63.16 E-value=3.9 Score=37.38 Aligned_cols=58 Identities=17% Similarity=0.151 Sum_probs=24.7
Q ss_pred CCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCC
Q 021719 149 DLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLN 210 (308)
Q Consensus 149 ~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it 210 (308)
+|+.|+++++.+... ..-...+|+|+.|.+..+ +.+-... ....++|+.|+++++.++
T Consensus 141 nL~~L~l~~N~i~~l--~~~~~~l~~L~~L~l~~N~l~~l~~~--~~~~~~L~~L~ls~N~i~ 199 (394)
T COG4886 141 NLKELDLSDNKIESL--PSPLRNLPNLKNLDLSFNDLSDLPKL--LSNLSNLNNLDLSGNKIS 199 (394)
T ss_pred hcccccccccchhhh--hhhhhccccccccccCCchhhhhhhh--hhhhhhhhheeccCCccc
Confidence 555555555533211 011123555666655544 2211110 013455555555554443
No 93
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=61.86 E-value=6.9 Score=20.13 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=6.9
Q ss_pred CCCcEEEeeCCCC
Q 021719 197 PKLKVLSLRCTTL 209 (308)
Q Consensus 197 p~L~~L~L~~~~i 209 (308)
++|++|+|.+|.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00370 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 4555555555444
No 94
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=61.86 E-value=6.9 Score=20.13 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=6.9
Q ss_pred CCCcEEEeeCCCC
Q 021719 197 PKLKVLSLRCTTL 209 (308)
Q Consensus 197 p~L~~L~L~~~~i 209 (308)
++|++|+|.+|.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00369 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 4555555555444
No 95
>PRK15386 type III secretion protein GogB; Provisional
Probab=55.15 E-value=27 Score=32.35 Aligned_cols=93 Identities=16% Similarity=0.198 Sum_probs=56.1
Q ss_pred hhCCCCcEEEcCCCCCCCHHHHHHHHhcCC-CCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCCCCHHHHHHHHhcCC
Q 021719 119 ERCPQLKRLVMPAWNRIKKTGICKAIRMWR-DLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLP 197 (308)
Q Consensus 119 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~p 197 (308)
..|++++.|+++.| .++.- ..+| +|++|.+++|..-......+ .++|++|.+.+|..- ..-.+
T Consensus 49 ~~~~~l~~L~Is~c-~L~sL------P~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L------~sLP~ 112 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESL------PVLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEI------SGLPE 112 (426)
T ss_pred HHhcCCCEEEeCCC-CCccc------CCCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccc------ccccc
Confidence 34799999999988 44321 1344 69999999873211111111 358999999876211 11235
Q ss_pred CCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccC
Q 021719 198 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISHC 232 (308)
Q Consensus 198 ~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C 232 (308)
+|+.|++.++.... +-.--++|+.|.+.++
T Consensus 113 sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~ 142 (426)
T PRK15386 113 SVRSLEIKGSATDS-----IKNVPNGLTSLSINSY 142 (426)
T ss_pred ccceEEeCCCCCcc-----cccCcchHhheecccc
Confidence 79999988655432 2122357888888543
No 96
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=42.03 E-value=23 Score=18.61 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=9.4
Q ss_pred CCCcEEEeeCCCCC
Q 021719 197 PKLKVLSLRCTTLN 210 (308)
Q Consensus 197 p~L~~L~L~~~~it 210 (308)
.+|+.|+|+.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56777777776663
No 97
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=37.18 E-value=4.9 Score=29.86 Aligned_cols=100 Identities=16% Similarity=0.262 Sum_probs=40.0
Q ss_pred hCCCCcEEEcCCC-CCCCHHHHHHHHhcCCCCCEEEeCCC--CCChHHHHHHHHcCCCCCeeEecCCCCHHHHHHHHhcC
Q 021719 120 RCPQLKRLVMPAW-NRIKKTGICKAIRMWRDLESLTMPSI--ANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYL 196 (308)
Q Consensus 120 ~~~~L~~L~L~~~-~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~ 196 (308)
.|.+|+.+.+... ..+. ......|++|+++++... .+.+.. ...|++|+.+.+...+..-+ ......+
T Consensus 10 ~~~~l~~i~~~~~~~~I~----~~~F~~~~~l~~i~~~~~~~~i~~~~----F~~~~~l~~i~~~~~~~~i~-~~~F~~~ 80 (129)
T PF13306_consen 10 NCSNLESITFPNTIKKIG----ENAFSNCTSLKSINFPNNLTSIGDNA----FSNCKSLESITFPNNLKSIG-DNAFSNC 80 (129)
T ss_dssp T-TT--EEEETST--EE-----TTTTTT-TT-SEEEESSTTSCE-TTT----TTT-TT-EEEEETSTT-EE--TTTTTT-
T ss_pred CCCCCCEEEECCCeeEeC----hhhcccccccccccccccccccceee----eecccccccccccccccccc-ccccccc
Confidence 4667777777632 1111 123456667788877654 111111 22466777777754321100 0122356
Q ss_pred CCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEeccc
Q 021719 197 PKLKVLSLRCTTLNRDALILILDGLQNLEVLNISH 231 (308)
Q Consensus 197 p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~ 231 (308)
++|+.+.+..+ ++.-+- ..+..| +|+.+.+..
T Consensus 81 ~~l~~i~~~~~-~~~i~~-~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGS-SSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTECEEEETTT--BEEHT-TTTTT--T--EEE-TT
T ss_pred ccccccccCcc-ccEEch-hhhcCC-CceEEEECC
Confidence 77777777532 221111 123445 677776653
No 98
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=32.83 E-value=1.4e+02 Score=26.78 Aligned_cols=89 Identities=11% Similarity=0.109 Sum_probs=58.7
Q ss_pred CHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcC---CCCCEEEeCCCCCChH---HHHHHHHcCCCCCeeEecCC
Q 021719 110 SDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMW---RDLESLTMPSIANPPY---LMEEIAQNCRNFRELKIMGP 183 (308)
Q Consensus 110 ~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~---~~L~~L~l~~~~~~~~---~l~~l~~~~~~L~~L~l~~~ 183 (308)
.++.+..+-..-|+++..++.....++...+..+...+ ...+...+.+...++. .+..+.+.|+.|++|++.+.
T Consensus 186 ~e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesn 265 (353)
T KOG3735|consen 186 VESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESN 265 (353)
T ss_pred HHHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheecccc
Confidence 45667777777888999998887777776655555443 3444444444433332 33344456788999999887
Q ss_pred -CCHHHHHHHHhcCCC
Q 021719 184 -FDLLFASTLNMYLPK 198 (308)
Q Consensus 184 -~~~~~~~~l~~~~p~ 198 (308)
++..++.++...+..
T Consensus 266 FItg~gi~a~~~al~~ 281 (353)
T KOG3735|consen 266 FITGLGIMALLRALQS 281 (353)
T ss_pred ccccHHHHHHHHHHhc
Confidence 788888877655543
No 99
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=30.41 E-value=1.6e+02 Score=19.12 Aligned_cols=43 Identities=9% Similarity=0.098 Sum_probs=19.6
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHH
Q 021719 122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIA 169 (308)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~ 169 (308)
.+++.+.+.....++-+.+..+ +-+.+.+..+.++...+..+.
T Consensus 11 ~~~~~l~i~~~~~it~~~Ll~~-----nc~~i~l~~~~~t~~dln~Fl 53 (70)
T PF07735_consen 11 RNLEKLSISSSNWITLDDLLNM-----NCKKIELWNSKFTNEDLNKFL 53 (70)
T ss_pred CCCCEEEEccCCcccHHHHHhc-----CCCEEEEECCCCCHHHHHHHH
Confidence 3455555555445544433221 334444444444544444433
No 100
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=28.57 E-value=1.2e+02 Score=22.83 Aligned_cols=33 Identities=15% Similarity=-0.026 Sum_probs=21.6
Q ss_pred CCCCeeEecCCCCHHHHHHHHhcCCCCcEEEee
Q 021719 173 RNFRELKIMGPFDLLFASTLNMYLPKLKVLSLR 205 (308)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~ 205 (308)
|+=+..+|....++.++..+.+.||+|+.+.+-
T Consensus 17 ~nE~~VHlAFRPSN~Dif~Lv~~CP~lk~iqiP 49 (131)
T PF08004_consen 17 PNEEIVHLAFRPSNKDIFSLVERCPNLKAIQIP 49 (131)
T ss_pred CCceEEEEEecCcchHHHHHHHhCCCCeEEeCC
Confidence 455555665556666666777777777777774
No 101
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=22.95 E-value=65 Score=16.97 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=10.7
Q ss_pred HHHcCCCCCEEeccc
Q 021719 217 ILDGLQNLEVLNISH 231 (308)
Q Consensus 217 l~~~~p~L~~L~l~~ 231 (308)
++..+|+|+.||...
T Consensus 8 Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 8 VIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHCCccceecccc
Confidence 456688888887653
No 102
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=22.47 E-value=52 Score=17.33 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=7.8
Q ss_pred CCCcEEEeeCCCC
Q 021719 197 PKLKVLSLRCTTL 209 (308)
Q Consensus 197 p~L~~L~L~~~~i 209 (308)
++|+.|++++|++
T Consensus 2 ~~L~~L~vs~N~L 14 (26)
T smart00364 2 PSLKELNVSNNQL 14 (26)
T ss_pred cccceeecCCCcc
Confidence 3566666666554
No 103
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=21.35 E-value=24 Score=31.33 Aligned_cols=46 Identities=20% Similarity=0.120 Sum_probs=41.1
Q ss_pred CcCCCCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCcceeee
Q 021719 10 RWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLD 56 (308)
Q Consensus 10 ~~~~LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~ 56 (308)
..+.+|.+++..|.+++..+++.+ ++.|+++-..+...-.+|++..
T Consensus 7 ~le~~~~~~l~~vls~~~~~~~~~-~a~vs~rLk~~~s~~~lw~r~c 52 (386)
T KOG4408|consen 7 GLEWLPRDPLHLVLSFLLYRDLIN-CAYVSRRLKELGSHLPLWNRPC 52 (386)
T ss_pred chhhcccccceeeecccchhhhhc-ceeechHHhhhhhccccccccc
Confidence 456789999999999999999999 9999999999998777888665
No 104
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.23 E-value=15 Score=22.32 Aligned_cols=23 Identities=39% Similarity=0.962 Sum_probs=15.5
Q ss_pred ccccccccCccCcccchhhhhhccccccc--cccc
Q 021719 269 EDSCIMCQRTKNDEGIMRWYKYEEGLWKD--DEVL 301 (308)
Q Consensus 269 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 301 (308)
...|..|++ ++.| + +-|.. ||+|
T Consensus 12 ~KICpvCqR------PFsW-R---kKW~~cWDeVK 36 (54)
T COG4338 12 DKICPVCQR------PFSW-R---KKWARCWDEVK 36 (54)
T ss_pred hhhhhhhcC------chHH-H---HHHHHHHHHHH
Confidence 356899999 8888 3 35655 5654
Done!