Query 021719
Match_columns 308
No_of_seqs 316 out of 2196
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 08:18:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.9 3.8E-24 1.3E-28 190.1 22.9 223 7-236 5-261 (336)
2 2p1m_B Transport inhibitor res 99.8 5.6E-21 1.9E-25 182.1 12.6 219 9-233 4-246 (594)
3 3ogk_B Coronatine-insensitive 99.8 2E-18 6.8E-23 164.5 15.0 214 11-231 13-252 (592)
4 3ogk_B Coronatine-insensitive 99.5 1.8E-12 6.1E-17 123.3 17.9 143 92-236 338-501 (592)
5 1fs1_A SKP2 F-BOX, cyclin A/CD 99.4 4.5E-14 1.5E-18 90.0 3.8 50 6-56 4-53 (53)
6 2ast_B S-phase kinase-associat 99.4 2.1E-12 7E-17 114.2 15.0 136 95-232 141-282 (336)
7 2p1m_B Transport inhibitor res 99.4 2.8E-12 9.7E-17 121.9 16.0 140 94-234 336-493 (594)
8 3e4g_A ATP synthase subunit S, 99.4 6.2E-13 2.1E-17 105.9 7.5 87 149-237 62-154 (176)
9 3e4g_A ATP synthase subunit S, 99.3 3.2E-12 1.1E-16 101.7 6.8 102 122-226 61-171 (176)
10 1io0_A Tropomodulin; LRR prote 99.2 9.6E-10 3.3E-14 88.9 16.8 123 111-233 25-162 (185)
11 3un9_A NLR family member X1; l 99.2 4.9E-10 1.7E-14 100.6 15.9 144 88-233 93-250 (372)
12 2ca6_A RAN GTPase-activating p 99.1 1.2E-09 4.3E-14 98.3 14.7 113 120-233 185-314 (386)
13 3un9_A NLR family member X1; l 99.1 1.1E-09 3.6E-14 98.4 13.7 138 95-234 71-223 (372)
14 2ca6_A RAN GTPase-activating p 99.1 1.3E-08 4.5E-13 91.5 19.5 141 94-236 120-288 (386)
15 1z7x_W Ribonuclease inhibitor; 99.0 4.8E-09 1.6E-13 96.5 14.3 137 95-233 27-181 (461)
16 1z7x_W Ribonuclease inhibitor; 99.0 9.2E-09 3.1E-13 94.5 14.8 111 121-232 255-380 (461)
17 1io0_A Tropomodulin; LRR prote 98.8 1.5E-07 5.3E-12 75.7 15.4 128 84-213 25-167 (185)
18 2je0_A Acidic leucine-rich nuc 98.8 1.6E-09 5.6E-14 84.0 3.2 107 119-230 39-148 (149)
19 3goz_A Leucine-rich repeat-con 98.8 2.5E-07 8.6E-12 82.5 16.7 39 122-161 80-122 (362)
20 2je0_A Acidic leucine-rich nuc 98.7 2.6E-09 9E-14 82.8 2.1 111 121-236 16-127 (149)
21 2ell_A Acidic leucine-rich nuc 98.7 5.7E-10 2E-14 88.5 -1.8 138 94-237 22-162 (168)
22 2ra8_A Uncharacterized protein 98.7 5E-08 1.7E-12 87.1 8.5 135 95-236 171-320 (362)
23 3goz_A Leucine-rich repeat-con 98.6 2.1E-07 7E-12 83.0 11.0 140 95-236 21-181 (362)
24 3l2o_B F-box only protein 4; s 98.6 4.2E-09 1.5E-13 89.4 -0.1 49 10-59 4-52 (312)
25 1pgv_A TMD-1, tropomodulin TMD 98.6 1.7E-06 5.7E-11 70.0 14.5 122 111-232 30-167 (197)
26 4ezg_A Putative uncharacterize 98.6 2.2E-08 7.7E-13 81.4 2.6 106 119-233 63-170 (197)
27 2ra8_A Uncharacterized protein 98.5 4.2E-07 1.4E-11 81.1 10.8 135 95-232 192-340 (362)
28 2e31_A FBS1, F-box only protei 98.5 2.7E-08 9.4E-13 85.3 2.6 48 9-57 49-97 (297)
29 2ell_A Acidic leucine-rich nuc 98.5 7E-09 2.4E-13 82.1 -1.2 112 120-236 22-134 (168)
30 4fmz_A Internalin; leucine ric 98.4 3.3E-07 1.1E-11 80.9 7.3 127 95-236 198-325 (347)
31 4ezg_A Putative uncharacterize 98.4 1.2E-07 4.1E-12 77.1 3.6 126 95-233 65-192 (197)
32 1a9n_A U2A', U2A'; complex (nu 98.3 2E-07 6.7E-12 74.3 2.3 131 95-233 18-151 (176)
33 4fmz_A Internalin; leucine ric 98.3 2.4E-06 8.2E-11 75.3 8.5 125 94-235 175-300 (347)
34 1h6t_A Internalin B; cell adhe 98.2 1.5E-06 5.2E-11 75.0 6.4 100 120-232 88-188 (291)
35 1m9s_A Internalin B; cell inva 98.2 1.3E-06 4.4E-11 83.2 5.0 36 195-233 173-208 (605)
36 1pgv_A TMD-1, tropomodulin TMD 98.2 2.5E-05 8.7E-10 63.0 11.7 98 137-234 30-138 (197)
37 3v7d_B Cell division control p 98.2 2.8E-07 9.7E-12 84.2 0.2 47 11-58 15-62 (464)
38 1h6u_A Internalin H; cell adhe 98.1 2.4E-06 8.1E-11 74.4 6.1 122 96-234 85-207 (308)
39 1h6u_A Internalin H; cell adhe 98.1 2.3E-06 7.7E-11 74.5 5.7 125 95-236 62-187 (308)
40 1h6t_A Internalin B; cell adhe 98.1 1.7E-06 5.9E-11 74.7 4.8 125 95-236 89-214 (291)
41 1a9n_A U2A', U2A'; complex (nu 98.1 2.7E-07 9.2E-12 73.5 -0.5 110 120-236 17-127 (176)
42 4fcg_A Uncharacterized protein 98.1 9E-08 3.1E-12 84.3 -3.8 40 195-236 204-243 (328)
43 1wwl_A Monocyte differentiatio 98.1 7.9E-07 2.7E-11 77.5 2.0 110 122-233 149-264 (312)
44 1wwl_A Monocyte differentiatio 98.1 5.1E-06 1.8E-10 72.3 6.9 116 119-236 118-242 (312)
45 1m9s_A Internalin B; cell inva 98.1 2.5E-06 8.5E-11 81.3 4.9 124 95-235 64-188 (605)
46 2ovr_B FBW7, F-BOX/WD repeat p 98.1 1.5E-06 5.1E-11 79.1 3.1 46 10-56 18-63 (445)
47 1p22_A F-BOX/WD-repeat protein 98.0 5.2E-07 1.8E-11 82.0 -0.4 45 11-56 11-59 (435)
48 3v47_A TOLL-like receptor 5B a 98.0 3.9E-07 1.3E-11 83.5 -1.5 113 120-234 52-166 (455)
49 1ds9_A Outer arm dynein; leuci 98.0 2.1E-07 7.1E-12 75.7 -3.1 105 120-233 46-151 (198)
50 4glp_A Monocyte differentiatio 98.0 3E-06 1E-10 73.8 3.9 137 97-236 92-238 (310)
51 1o6v_A Internalin A; bacterial 98.0 6.1E-06 2.1E-10 76.0 6.0 36 195-233 329-364 (466)
52 3rfs_A Internalin B, repeat mo 98.0 9.9E-07 3.4E-11 75.3 0.5 132 95-235 62-194 (272)
53 1xeu_A Internalin C; cellular 98.0 3.1E-06 1.1E-10 71.9 3.4 100 120-233 61-161 (263)
54 3rfs_A Internalin B, repeat mo 97.9 5.8E-07 2E-11 76.8 -1.8 134 95-235 84-218 (272)
55 1o6v_A Internalin A; bacterial 97.9 7E-06 2.4E-10 75.6 5.4 104 120-236 285-389 (466)
56 2z62_A TOLL-like receptor 4, v 97.9 3.8E-07 1.3E-11 78.0 -3.3 109 121-233 51-160 (276)
57 1ds9_A Outer arm dynein; leuci 97.9 1.2E-06 4.1E-11 71.1 -0.2 124 95-228 47-180 (198)
58 2z7x_B TOLL-like receptor 1, v 97.9 4.1E-06 1.4E-10 78.1 3.2 110 120-235 346-457 (520)
59 2z7x_B TOLL-like receptor 1, v 97.9 3.1E-06 1.1E-10 78.9 2.4 134 95-236 347-482 (520)
60 4glp_A Monocyte differentiatio 97.9 1.4E-06 4.8E-11 75.8 -0.3 112 120-234 143-263 (310)
61 1xeu_A Internalin C; cellular 97.9 3.7E-06 1.3E-10 71.5 1.7 124 95-236 62-186 (263)
62 4fcg_A Uncharacterized protein 97.8 5E-07 1.7E-11 79.5 -4.3 133 94-236 79-220 (328)
63 3o6n_A APL1; leucine-rich repe 97.8 1.8E-06 6.3E-11 77.5 -0.8 105 123-236 227-332 (390)
64 2z66_A Variable lymphocyte rec 97.8 8E-08 2.7E-12 83.5 -9.8 113 121-236 100-213 (306)
65 2z66_A Variable lymphocyte rec 97.8 3.4E-07 1.2E-11 79.5 -5.9 110 120-233 124-234 (306)
66 1ozn_A Reticulon 4 receptor; N 97.8 3.4E-06 1.2E-10 72.3 0.2 38 195-233 199-236 (285)
67 2o6s_A Variable lymphocyte rec 97.8 1.2E-06 4E-11 71.6 -2.8 132 97-235 29-161 (208)
68 1xku_A Decorin; proteoglycan, 97.8 1.5E-06 5.1E-11 76.2 -2.4 62 96-159 121-182 (330)
69 4g8a_A TOLL-like receptor 4; l 97.8 1.4E-06 4.7E-11 82.9 -2.9 111 120-234 74-185 (635)
70 2wfh_A SLIT homolog 2 protein 97.7 2E-06 6.9E-11 69.6 -1.7 108 122-235 31-139 (193)
71 2z63_A TOLL-like receptor 4, v 97.7 1.6E-07 5.6E-12 88.5 -9.7 38 195-233 468-505 (570)
72 3e6j_A Variable lymphocyte rec 97.7 2.9E-06 9.8E-11 70.6 -1.1 132 96-235 40-172 (229)
73 2z80_A TOLL-like receptor 2, v 97.7 2.5E-06 8.4E-11 75.6 -1.9 135 96-236 52-188 (353)
74 2z63_A TOLL-like receptor 4, v 97.7 1.6E-06 5.5E-11 81.6 -3.3 110 120-233 50-160 (570)
75 3vq2_A TLR4, TOLL-like recepto 97.7 1.4E-06 4.9E-11 82.8 -3.9 110 120-233 54-164 (606)
76 2z81_A CD282 antigen, TOLL-lik 97.7 2.4E-06 8.1E-11 80.2 -2.4 135 96-236 26-162 (549)
77 3m19_A Variable lymphocyte rec 97.7 2.5E-06 8.6E-11 71.8 -2.0 109 120-233 81-190 (251)
78 1ozn_A Reticulon 4 receptor; N 97.7 2.4E-06 8E-11 73.3 -2.3 109 120-233 103-212 (285)
79 2z80_A TOLL-like receptor 2, v 97.7 6E-06 2E-10 73.1 0.1 19 217-235 272-290 (353)
80 3m19_A Variable lymphocyte rec 97.7 2.4E-06 8.4E-11 71.9 -2.4 133 97-236 36-169 (251)
81 1dce_A Protein (RAB geranylger 97.7 7.7E-06 2.6E-10 77.3 0.6 106 122-236 441-547 (567)
82 2v70_A SLIT-2, SLIT homolog 2 97.7 2.6E-06 8.9E-11 70.4 -2.4 113 119-236 54-167 (220)
83 2z81_A CD282 antigen, TOLL-lik 97.6 9.6E-05 3.3E-09 69.1 7.9 65 146-210 332-400 (549)
84 2o6r_A Variable lymphocyte rec 97.6 2.4E-06 8.1E-11 67.9 -2.8 109 122-235 28-137 (177)
85 3o53_A Protein LRIM1, AGAP0063 97.6 2.8E-06 9.6E-11 74.2 -2.6 107 121-235 143-250 (317)
86 2o6s_A Variable lymphocyte rec 97.6 3.4E-06 1.2E-10 68.8 -2.0 110 121-235 27-137 (208)
87 3vq2_A TLR4, TOLL-like recepto 97.6 3.9E-07 1.3E-11 86.7 -8.9 87 146-234 422-509 (606)
88 3o53_A Protein LRIM1, AGAP0063 97.6 9.5E-07 3.3E-11 77.2 -5.8 132 96-236 144-276 (317)
89 3e6j_A Variable lymphocyte rec 97.6 6.8E-06 2.3E-10 68.2 -0.3 108 122-235 40-148 (229)
90 2v9t_B SLIT homolog 2 protein 97.6 3.3E-06 1.1E-10 69.8 -2.4 111 120-235 54-165 (220)
91 1ogq_A PGIP-2, polygalacturona 97.6 3.7E-07 1.3E-11 79.7 -8.6 110 120-233 74-185 (313)
92 2o6q_A Variable lymphocyte rec 97.6 4E-06 1.4E-10 71.4 -2.1 133 95-234 60-193 (270)
93 4eco_A Uncharacterized protein 97.6 2.2E-05 7.6E-10 75.2 2.7 111 120-234 204-342 (636)
94 3rw6_A Nuclear RNA export fact 97.6 7.2E-05 2.5E-09 63.5 5.5 83 145-229 167-258 (267)
95 2o6q_A Variable lymphocyte rec 97.6 5.4E-06 1.8E-10 70.6 -1.6 134 95-235 84-218 (270)
96 3rgz_A Protein brassinosteroid 97.6 1.9E-06 6.4E-11 84.5 -5.1 37 145-182 220-256 (768)
97 1w8a_A SLIT protein; signaling 97.6 1.5E-06 5.1E-11 70.2 -5.1 109 123-235 30-139 (192)
98 3t6q_A CD180 antigen; protein- 97.6 1.1E-06 3.9E-11 83.5 -6.8 38 195-233 474-511 (606)
99 3a79_B TLR6, VLRB.59, TOLL-lik 97.6 6.2E-06 2.1E-10 77.8 -1.7 135 94-236 351-487 (562)
100 1p9a_G Platelet glycoprotein I 97.6 3.4E-06 1.2E-10 72.8 -3.3 108 120-233 75-183 (290)
101 3oja_B Anopheles plasmodium-re 97.5 1.4E-05 4.8E-10 76.0 0.5 105 123-236 233-338 (597)
102 3v47_A TOLL-like receptor 5B a 97.5 3.6E-05 1.2E-09 70.3 3.3 134 96-232 79-249 (455)
103 3bz5_A Internalin-J, INLJ; leu 97.5 4.1E-05 1.4E-09 70.4 3.6 116 97-233 43-159 (457)
104 4ecn_A Leucine-rich repeat pro 97.5 2.6E-05 8.9E-10 77.2 2.4 36 195-233 571-606 (876)
105 3a79_B TLR6, VLRB.59, TOLL-lik 97.5 1.2E-05 4.1E-10 75.8 -0.0 110 119-234 350-462 (562)
106 3j0a_A TOLL-like receptor 5; m 97.5 2.1E-06 7.3E-11 85.0 -5.4 110 120-233 71-185 (844)
107 4ecn_A Leucine-rich repeat pro 97.5 1.2E-05 4.2E-10 79.5 -0.3 130 95-233 490-630 (876)
108 3o6n_A APL1; leucine-rich repe 97.5 6.7E-06 2.3E-10 73.8 -2.0 105 120-232 91-196 (390)
109 1dce_A Protein (RAB geranylger 97.5 1.8E-05 6.3E-10 74.7 0.8 80 149-236 442-522 (567)
110 2v9t_B SLIT homolog 2 protein 97.5 5.8E-06 2E-10 68.2 -2.5 111 122-237 32-143 (220)
111 2v70_A SLIT-2, SLIT homolog 2 97.5 3.3E-06 1.1E-10 69.8 -4.1 111 122-236 32-143 (220)
112 3rgz_A Protein brassinosteroid 97.5 1.2E-05 4.2E-10 78.7 -0.7 131 95-233 125-258 (768)
113 1xku_A Decorin; proteoglycan, 97.5 7.9E-06 2.7E-10 71.6 -2.0 59 122-182 121-180 (330)
114 3zyi_A Leucine-rich repeat-con 97.5 9.2E-06 3.1E-10 74.5 -1.6 107 120-232 169-276 (452)
115 3zyj_A Leucine-rich repeat-con 97.5 7.6E-06 2.6E-10 74.8 -2.3 107 120-232 158-265 (440)
116 3zyi_A Leucine-rich repeat-con 97.5 6.1E-06 2.1E-10 75.7 -3.1 134 96-236 75-210 (452)
117 2id5_A Lingo-1, leucine rich r 97.4 1.6E-05 5.5E-10 73.2 -0.7 89 145-236 125-214 (477)
118 2xot_A Amphoterin-induced prot 97.4 7E-06 2.4E-10 73.1 -3.1 110 120-233 62-174 (361)
119 3t6q_A CD180 antigen; protein- 97.4 1.1E-05 3.7E-10 76.6 -2.0 113 119-236 422-537 (606)
120 3oja_A Leucine-rich immune mol 97.4 8.9E-06 3.1E-10 75.4 -2.6 38 146-183 142-179 (487)
121 2z62_A TOLL-like receptor 4, v 97.4 5.9E-06 2E-10 70.5 -3.6 110 122-236 28-138 (276)
122 4b8c_D Glucose-repressible alc 97.4 1.2E-05 3.9E-10 78.4 -2.3 107 119-234 221-328 (727)
123 4eco_A Uncharacterized protein 97.4 3.5E-05 1.2E-09 73.8 0.9 93 142-235 200-318 (636)
124 2id5_A Lingo-1, leucine rich r 97.4 2.4E-05 8.4E-10 72.0 -0.3 109 120-233 78-187 (477)
125 3oja_A Leucine-rich immune mol 97.4 1.6E-05 5.4E-10 73.7 -1.6 108 120-235 142-250 (487)
126 3oja_B Anopheles plasmodium-re 97.4 1.5E-05 5.1E-10 75.8 -1.9 105 120-232 97-202 (597)
127 3bz5_A Internalin-J, INLJ; leu 97.3 6.6E-05 2.2E-09 69.0 2.4 101 120-236 40-141 (457)
128 3zyj_A Leucine-rich repeat-con 97.3 1.1E-05 3.9E-10 73.6 -2.8 134 96-236 64-199 (440)
129 1p9a_G Platelet glycoprotein I 97.3 1E-05 3.5E-10 69.8 -3.1 110 119-236 52-162 (290)
130 3rw6_A Nuclear RNA export fact 97.3 0.00027 9.2E-09 60.0 5.6 90 114-205 162-259 (267)
131 1ogq_A PGIP-2, polygalacturona 97.3 3.1E-06 1.1E-10 73.8 -7.2 111 122-235 50-162 (313)
132 1ziw_A TOLL-like receptor 3; i 97.2 4.7E-05 1.6E-09 73.3 -0.8 132 96-234 25-157 (680)
133 2ft3_A Biglycan; proteoglycan, 97.1 1.9E-05 6.6E-10 69.2 -3.3 37 195-233 239-275 (332)
134 2xot_A Amphoterin-induced prot 97.1 1.4E-05 5E-10 71.0 -4.4 110 122-236 39-150 (361)
135 4g8a_A TOLL-like receptor 4; l 97.1 1.3E-05 4.3E-10 76.2 -5.6 84 145-231 491-576 (635)
136 1ziw_A TOLL-like receptor 3; i 97.1 4E-05 1.4E-09 73.8 -2.1 39 144-183 476-514 (680)
137 3j0a_A TOLL-like receptor 5; m 97.0 4.7E-05 1.6E-09 75.4 -2.3 38 195-232 121-158 (844)
138 3g06_A SSPH2 (leucine-rich rep 96.9 0.00092 3.2E-08 63.7 5.3 75 147-233 220-295 (622)
139 2r9u_A Variable lymphocyte rec 96.8 8.7E-05 3E-09 58.8 -1.9 85 148-235 33-118 (174)
140 2ft3_A Biglycan; proteoglycan, 96.8 0.0001 3.6E-09 64.4 -1.7 130 96-235 54-185 (332)
141 2xwt_C Thyrotropin receptor; s 96.8 2.5E-05 8.6E-10 65.0 -5.7 132 96-235 31-169 (239)
142 3g39_A Variable lymphocyte rec 96.6 0.00015 5E-09 57.2 -1.9 84 148-234 30-114 (170)
143 2o6r_A Variable lymphocyte rec 96.6 0.00017 5.8E-09 56.9 -1.8 86 147-235 27-113 (177)
144 2xwt_C Thyrotropin receptor; s 96.6 3.2E-05 1.1E-09 64.4 -6.5 134 95-236 54-193 (239)
145 2wfh_A SLIT homolog 2 protein 96.5 0.00031 1E-08 56.5 -0.8 86 147-236 30-116 (193)
146 3cvr_A Invasion plasmid antige 96.5 0.00094 3.2E-08 63.0 2.2 55 146-210 138-193 (571)
147 1w8a_A SLIT protein; signaling 96.4 0.00017 6E-09 57.9 -3.0 87 148-236 29-116 (192)
148 3cvr_A Invasion plasmid antige 96.3 0.00074 2.5E-08 63.7 0.5 102 120-234 138-242 (571)
149 3sb4_A Hypothetical leucine ri 96.3 0.00044 1.5E-08 60.4 -1.2 111 110-228 214-327 (329)
150 4b8c_D Glucose-repressible alc 96.2 0.00052 1.8E-08 66.8 -1.1 89 141-235 217-306 (727)
151 3g06_A SSPH2 (leucine-rich rep 96.2 0.0033 1.1E-07 59.9 4.1 93 96-210 61-154 (622)
152 3g39_A Variable lymphocyte rec 96.1 0.00082 2.8E-08 52.8 -0.5 85 122-210 30-115 (170)
153 2r9u_A Variable lymphocyte rec 96.0 0.00086 2.9E-08 52.9 -0.6 85 122-210 33-118 (174)
154 1jl5_A Outer protein YOPM; leu 95.9 0.002 6.9E-08 59.0 1.0 13 220-232 235-247 (454)
155 1jl5_A Outer protein YOPM; leu 95.7 0.0048 1.6E-07 56.4 2.8 76 145-233 192-268 (454)
156 2ifg_A High affinity nerve gro 95.3 0.0014 4.9E-08 57.4 -1.9 61 121-183 30-90 (347)
157 2ifg_A High affinity nerve gro 94.2 0.0053 1.8E-07 53.7 -1.2 88 144-235 27-116 (347)
158 3sb4_A Hypothetical leucine ri 93.5 0.0071 2.4E-07 52.6 -1.7 103 124-232 204-307 (329)
159 4ay9_X Follicle-stimulating ho 88.4 0.005 1.7E-07 54.1 -8.1 12 222-233 154-165 (350)
160 4gt6_A Cell surface protein; l 86.6 0.16 5.6E-06 45.1 0.6 99 120-231 263-366 (394)
161 4gt6_A Cell surface protein; l 86.3 0.21 7.4E-06 44.3 1.3 99 119-230 285-386 (394)
162 4ay9_X Follicle-stimulating ho 85.6 0.035 1.2E-06 48.6 -4.2 111 122-237 30-143 (350)
163 4fdw_A Leucine rich hypothetic 77.3 0.38 1.3E-05 43.0 -0.6 38 194-231 268-309 (401)
164 4fdw_A Leucine rich hypothetic 73.9 0.66 2.3E-05 41.4 0.0 107 122-236 248-359 (401)
165 4fs7_A Uncharacterized protein 63.4 0.49 1.7E-05 41.9 -3.2 12 219-230 363-374 (394)
166 4fs7_A Uncharacterized protein 58.4 1.2 4.2E-05 39.3 -1.5 96 120-227 295-393 (394)
167 2l7x_A Envelope glycoprotein; 54.1 4.4 0.00015 25.9 1.0 22 266-287 27-48 (77)
168 4h09_A Hypothetical leucine ri 48.7 2.2 7.6E-05 37.2 -1.4 58 171-230 261-318 (379)
169 4h09_A Hypothetical leucine ri 45.5 1.6 5.6E-05 38.1 -2.8 99 119-230 237-341 (379)
170 3rfe_A Platelet glycoprotein I 33.7 14 0.00049 26.8 1.2 16 194-209 52-67 (130)
171 2l2r_A Antimicrobial peptide e 26.8 12 0.00039 20.2 -0.3 11 289-299 14-24 (37)
172 2kwv_A RAD30 homolog B, DNA po 25.4 42 0.0014 19.5 1.9 15 11-25 21-35 (48)
173 2lz0_A Uncharacterized protein 23.6 35 0.0012 23.4 1.7 11 195-205 41-51 (100)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.93 E-value=3.8e-24 Score=190.08 Aligned_cols=223 Identities=21% Similarity=0.255 Sum_probs=133.4
Q ss_pred cCCCcCCCCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCcceeeecccccc-----------cccccCCCCce--
Q 021719 7 TVRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLIS-----------NYIKIPLEPYV-- 73 (308)
Q Consensus 7 ~~~~~~~LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~l~~~~~-----------~~~~~~~~~~~-- 73 (308)
+..+|++||+|++.+||+||+.+|+.+ ++.|||+|+.++.+|.+|+++++....- ...........
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~-~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~ 83 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLK-VSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMD 83 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHH-TTSSCHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEEC
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHH-HHHHHHHHHHHhcCchhheeeccccccCCHHHHHhhhhccceEEEcCCcccc
Confidence 467899999999999999999999999 9999999999999999999999975310 00000000000
Q ss_pred -------------ee-cCCChHHHH-HHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHH
Q 021719 74 -------------YV-HGHSDKQLT-RILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKT 138 (308)
Q Consensus 74 -------------~~-~~~~~~~l~-~~l~~~~~~s~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~ 138 (308)
.+ ..... +. ..+.. .-.....++.+.+..+ .+++.....++. +++|++|+++++..+++.
T Consensus 84 ~~~~~~~~~~~L~~L~L~~~~--l~~~~~~~-~~~~~~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~ 158 (336)
T 2ast_B 84 QPLAEHFSPFRVQHMDLSNSV--IEVSTLHG-ILSQCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEF 158 (336)
T ss_dssp SCCCSCCCCBCCCEEECTTCE--ECHHHHHH-HHTTBCCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHH
T ss_pred ccchhhccCCCCCEEEccCCC--cCHHHHHH-HHhhCCCCCEEeCcCc-ccCHHHHHHHhc-CCCCCEEECCCCCCCCHH
Confidence 00 00000 00 10111 1123456666666555 355555555543 666666666666556665
Q ss_pred HHHHHHhcCCCCCEEEeCCC-CCChHHHHHHHHcCC-CCCeeEecCC---CCHHHHHHHHhcCCCCcEEEeeCCC-CCHH
Q 021719 139 GICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQNCR-NFRELKIMGP---FDLLFASTLNMYLPKLKVLSLRCTT-LNRD 212 (308)
Q Consensus 139 ~l~~~~~~~~~L~~L~l~~~-~~~~~~l~~l~~~~~-~L~~L~l~~~---~~~~~~~~l~~~~p~L~~L~L~~~~-it~~ 212 (308)
++...+..+++|++|++++| .+++..+..+...+| +|++|+++++ +++..+......+|+|++|+++++. +++.
T Consensus 159 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 238 (336)
T 2ast_B 159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND 238 (336)
T ss_dssp HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG
T ss_pred HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH
Confidence 66666666666666666666 666555555555566 6666666654 4545555555566666666666555 5555
Q ss_pred HHHHHHHcCCCCCEEecccCCCcC
Q 021719 213 ALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 213 ~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
++..+ ..+++|++|++++|..++
T Consensus 239 ~~~~l-~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 239 CFQEF-FQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp GGGGG-GGCTTCCEEECTTCTTCC
T ss_pred HHHHH-hCCCCCCEeeCCCCCCCC
Confidence 54433 445666666666665444
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=5.6e-21 Score=182.14 Aligned_cols=219 Identities=17% Similarity=0.197 Sum_probs=133.9
Q ss_pred CCcCCCCHHHHHHHhcCCC-hHHHhhHHhHhhHHHHHhccCCCcceeeeccccccc-----ccccCCCCceeecC-----
Q 021719 9 RRWEDLDNDILVKIFQSFD-IFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISN-----YIKIPLEPYVYVHG----- 77 (308)
Q Consensus 9 ~~~~~LP~eiL~~If~~L~-~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~l~~~~~~-----~~~~~~~~~~~~~~----- 77 (308)
..|++||+|||.+||+||+ .+|+.+ ++.|||+|+++. +..|..+++...... +..++.-....+..
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~-~s~vck~W~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 80 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNS-VSLVCKSWYEIE--RWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFA 80 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHH-HHTSCHHHHHHH--HHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGG
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHH-HHHHHHHHHHhh--hhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchh
Confidence 4689999999999999999 999999 999999999993 345666666432000 00000000000000
Q ss_pred -------CChHHHHHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCC
Q 021719 78 -------HSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDL 150 (308)
Q Consensus 78 -------~~~~~l~~~l~~~~~~s~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L 150 (308)
........++.. +....+.++.+.+..+. +++..+..++..+++|++|+|.+|..+++.++..+...|++|
T Consensus 81 ~~~l~~~~~~~~~~~~l~~-l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L 158 (594)
T 2p1m_B 81 DFNLVPDGWGGYVYPWIEA-MSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158 (594)
T ss_dssp GGTCSCTTSCCBCHHHHHH-HHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTC
T ss_pred hcccccccccchhhHHHHH-HHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCC
Confidence 000001122222 22346677777777653 677777777766777777777777677777777777777777
Q ss_pred CEEEeCCCCCC---hHHHHHHHHcCCCCCeeEecCC---CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCC
Q 021719 151 ESLTMPSIANP---PYLMEEIAQNCRNFRELKIMGP---FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNL 224 (308)
Q Consensus 151 ~~L~l~~~~~~---~~~l~~l~~~~~~L~~L~l~~~---~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L 224 (308)
++|++++|.++ ...+..+...+++|++|++.++ +++..+..+...+|+|++|+++++ ....++..++..+++|
T Consensus 159 ~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L 237 (594)
T 2p1m_B 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA-VPLEKLATLLQRAPQL 237 (594)
T ss_dssp CEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT-SCHHHHHHHHHHCTTC
T ss_pred CEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC-CcHHHHHHHHhcCCcc
Confidence 77777777433 2334444456777777777665 556666666667777888877754 2233466777777778
Q ss_pred CEEecccCC
Q 021719 225 EVLNISHCL 233 (308)
Q Consensus 225 ~~L~l~~C~ 233 (308)
++|++++|.
T Consensus 238 ~~L~l~~~~ 246 (594)
T 2p1m_B 238 EELGTGGYT 246 (594)
T ss_dssp SEEECSBCC
T ss_pred eEccccccc
Confidence 888777664
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=2e-18 Score=164.49 Aligned_cols=214 Identities=15% Similarity=0.165 Sum_probs=108.5
Q ss_pred cCCCCHHHHHHHhcCC-ChHHHhhHHhHhhHHHHHhccCCCcceeeecccccccc-----cccCCCCceeecC-------
Q 021719 11 WEDLDNDILVKIFQSF-DIFELTSGIAHVCSSWRSACCDPLLWKTLDLSMLISNY-----IKIPLEPYVYVHG------- 77 (308)
Q Consensus 11 ~~~LP~eiL~~If~~L-~~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~l~~~~~~~-----~~~~~~~~~~~~~------- 77 (308)
..+||+|+|.+||+|| +.+|+.+ ++.|||+|+.+.. ..+..+.+......+ ...+.-....+..
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~~-~s~vck~W~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 89 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRDS-ASLVCRRWFKIDS--ETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMF 89 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHHH-HTTSCHHHHHHHH--HHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGG
T ss_pred cCCCCHHHHHHHHHhcCCHHHHHH-HHHHhHHHHHhhh--ccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhc
Confidence 3489999999999999 8999999 9999999999842 222333322110000 0000000000000
Q ss_pred -----CChHHHHHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhCCC-CcEEEcCCCCCCCHHHHHHHHhcCCCCC
Q 021719 78 -----HSDKQLTRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQ-LKRLVMPAWNRIKKTGICKAIRMWRDLE 151 (308)
Q Consensus 78 -----~~~~~l~~~l~~~~~~s~~~l~~l~l~~~~~~~d~~l~~l~~~~~~-L~~L~L~~~~~~~~~~l~~~~~~~~~L~ 151 (308)
........++.. +......++.+.+..+ .+++..+..++..+++ |++|+|.+|..+++.++..+...|++|+
T Consensus 90 ~~~~~~~~~~~~~~l~~-l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~ 167 (592)
T 3ogk_B 90 NLIPENWGGYVTPWVTE-ISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIK 167 (592)
T ss_dssp TCSCTTSCCBCHHHHHH-HHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCS
T ss_pred ccccccccccchHHHHH-HHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCC
Confidence 000000111111 1223455555555544 3455555555554444 6666665555455555555555566666
Q ss_pred EEEeCCCCCC---hHHHHHHHHcCCCCCeeEecCC-C---CHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCC
Q 021719 152 SLTMPSIANP---PYLMEEIAQNCRNFRELKIMGP-F---DLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNL 224 (308)
Q Consensus 152 ~L~l~~~~~~---~~~l~~l~~~~~~L~~L~l~~~-~---~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L 224 (308)
+|++++|.++ ...+..+...+++|++|+++++ + ++..+..+...+|+|++|++.++.++. +...+..+++|
T Consensus 168 ~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--l~~~~~~~~~L 245 (592)
T 3ogk_B 168 TLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE--LVGFFKAAANL 245 (592)
T ss_dssp EEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG--GHHHHHHCTTC
T ss_pred EEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH--HHHHHhhhhHH
Confidence 6666555332 1224444445566666665543 2 244444445555666666665544432 33445555666
Q ss_pred CEEeccc
Q 021719 225 EVLNISH 231 (308)
Q Consensus 225 ~~L~l~~ 231 (308)
++|++++
T Consensus 246 ~~L~l~~ 252 (592)
T 3ogk_B 246 EEFCGGS 252 (592)
T ss_dssp CEEEECB
T ss_pred Hhhcccc
Confidence 6666654
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.46 E-value=1.8e-12 Score=123.27 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=99.3
Q ss_pred HhcCCCccEEEccC----------CCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeC----C
Q 021719 92 SLSRGSIRTLIFHF----------NLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMP----S 157 (308)
Q Consensus 92 ~~s~~~l~~l~l~~----------~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~----~ 157 (308)
...++.++.+.+.. +..+++..+..+...|++|++|++ .+..+++.++..+...+++|++|+++ .
T Consensus 338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~ 416 (592)
T 3ogk_B 338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDRE 416 (592)
T ss_dssp HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCC
T ss_pred HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCC
Confidence 34467788888873 667778777777777888888888 45577777777776677777777775 2
Q ss_pred CCCCh----HHHHHHHHcCCCCCeeEecC---CCCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecc
Q 021719 158 IANPP----YLMEEIAQNCRNFRELKIMG---PFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNIS 230 (308)
Q Consensus 158 ~~~~~----~~l~~l~~~~~~L~~L~l~~---~~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~ 230 (308)
+.+++ +.+..+...|++|++|+++. .+++..+..+...+|+|++|+++++.+++.++..++.+|++|++|+|+
T Consensus 417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~ 496 (592)
T 3ogk_B 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496 (592)
T ss_dssp SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEE
T ss_pred ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeecc
Confidence 23443 45666666677777777743 256666666666677777777777777777777777777777777777
Q ss_pred cCCCcC
Q 021719 231 HCLLID 236 (308)
Q Consensus 231 ~C~~i~ 236 (308)
+|. ++
T Consensus 497 ~n~-l~ 501 (592)
T 3ogk_B 497 GCC-FS 501 (592)
T ss_dssp SCC-CB
T ss_pred CCC-Cc
Confidence 776 44
No 5
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.45 E-value=4.5e-14 Score=90.00 Aligned_cols=50 Identities=32% Similarity=0.684 Sum_probs=40.3
Q ss_pred ccCCCcCCCCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCcceeee
Q 021719 6 STVRRWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLD 56 (308)
Q Consensus 6 ~~~~~~~~LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~ 56 (308)
.+...|.+||+||+.+||+||+.+|+.+ +++|||+|+.++.++.+|+.+|
T Consensus 4 ~~~~~~~~LP~eil~~I~~~L~~~dl~~-~~~Vck~w~~~~~~~~lW~~ld 53 (53)
T 1fs1_A 4 FPGVSWDSLPDELLLGIFSCLCLPELLK-VSGVCKRWYRLASDESLWQTLD 53 (53)
T ss_dssp -----CCSSCHHHHHHHHTTSCGGGHHH-HHTTCHHHHHHHTCGGGC----
T ss_pred CCCCCHHHCCHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhCChHHHHhcC
Confidence 3456799999999999999999999999 9999999999999999999875
No 6
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.43 E-value=2.1e-12 Score=114.18 Aligned_cols=136 Identities=14% Similarity=0.156 Sum_probs=70.4
Q ss_pred CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCC-CCCEEEeCCC--CCChHHHHHHHHc
Q 021719 95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWR-DLESLTMPSI--ANPPYLMEEIAQN 171 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~--~~~~~~l~~l~~~ 171 (308)
...++.+.+..+..+++..+..+...+++|++|+++++..+++.++...+..++ +|++|++++| .+++..+..+...
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~ 220 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 220 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence 445555555555455555555555555555555555554555555555555555 5555555555 3444444444445
Q ss_pred CCCCCeeEecCC--CCHHHHHHHHhcCCCCcEEEeeCC-CCCHHHHHHHHHcCCCCCEEecccC
Q 021719 172 CRNFRELKIMGP--FDLLFASTLNMYLPKLKVLSLRCT-TLNRDALILILDGLQNLEVLNISHC 232 (308)
Q Consensus 172 ~~~L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~~~-~it~~~l~~l~~~~p~L~~L~l~~C 232 (308)
+|+|++|+++++ +++.....+ ..+++|++|+++++ .+++.++..+ ..+|+|++|++++|
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS
T ss_pred CCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHHHHH-hcCCCCCEEeccCc
Confidence 555555555554 233333322 24555555555533 4444444222 34555555555555
No 7
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.42 E-value=2.8e-12 Score=121.88 Aligned_cols=140 Identities=16% Similarity=0.299 Sum_probs=85.0
Q ss_pred cCCCccEEEc--------cCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeC--C---C-C
Q 021719 94 SRGSIRTLIF--------HFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMP--S---I-A 159 (308)
Q Consensus 94 s~~~l~~l~l--------~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~--~---~-~ 159 (308)
.+..++.+.+ ..+..+++..+..++..+++|+.|.+ .+..+++.++..+...+++|++|+++ + | .
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 414 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY 414 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence 4566777766 33455666666666666666666644 34456666666666666666666666 2 2 3
Q ss_pred CC----hHHHHHHHHcCCCCCeeEecCCCCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCC
Q 021719 160 NP----PYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 234 (308)
Q Consensus 160 ~~----~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~ 234 (308)
++ +..+..+...|++|++|++++.+++..+..+...+++|+.|+|+++.+++.++..+..+||+|++|+|++|..
T Consensus 415 l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 415 LTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp TTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred ccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 44 4555555556666666666555566555555555666666666666666666666555566666666666654
No 8
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.39 E-value=6.2e-13 Score=105.87 Aligned_cols=87 Identities=8% Similarity=0.141 Sum_probs=60.4
Q ss_pred CCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC--CCHHHHHHHHh---cCCCCcEEEee-CCCCCHHHHHHHHHcCC
Q 021719 149 DLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP--FDLLFASTLNM---YLPKLKVLSLR-CTTLNRDALILILDGLQ 222 (308)
Q Consensus 149 ~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~~~l~~---~~p~L~~L~L~-~~~it~~~l~~l~~~~p 222 (308)
.|++|++++|.+++..+..+. .|++|++|+|++| ++|.++..+.. .+++|++|+|+ |..|||.++..+. .||
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GCT
T ss_pred eEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cCC
Confidence 466666666666666666663 5677777777666 66777666664 24678888887 4568888887764 578
Q ss_pred CCCEEecccCCCcCC
Q 021719 223 NLEVLNISHCLLIDV 237 (308)
Q Consensus 223 ~L~~L~l~~C~~i~~ 237 (308)
+|++|+|++|..+|+
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 888888888888875
No 9
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.30 E-value=3.2e-12 Score=101.73 Aligned_cols=102 Identities=15% Similarity=0.090 Sum_probs=86.3
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCC-CCChHHHHHHHHc---CCCCCeeEecCC--CCHHHHHHHHhc
Q 021719 122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQN---CRNFRELKIMGP--FDLLFASTLNMY 195 (308)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~l~~l~~~---~~~L~~L~l~~~--~~~~~~~~l~~~ 195 (308)
.+|+.|++++|. +++.++..+ ..|++|++|+|++| .+++..+..++.. |++|++|++++| ++|.++..+. .
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-H 137 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-G
T ss_pred ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-c
Confidence 469999999995 999988765 68999999999999 6999999999873 678999999987 8999998886 7
Q ss_pred CCCCcEEEee-CCCCCHHHH--HHHHHcCCCCCE
Q 021719 196 LPKLKVLSLR-CTTLNRDAL--ILILDGLQNLEV 226 (308)
Q Consensus 196 ~p~L~~L~L~-~~~it~~~l--~~l~~~~p~L~~ 226 (308)
+|+|++|+|+ |..+|+.++ ..+-+..|+++.
T Consensus 138 ~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 9999999998 677998774 455566888763
No 10
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.20 E-value=9.6e-10 Score=88.86 Aligned_cols=123 Identities=11% Similarity=0.084 Sum_probs=99.0
Q ss_pred HHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHH---HhcCCCCCEEEeCCCCCChHHHHHHHH---cCCCCCeeEecCC-
Q 021719 111 DDQLTYTAERCPQLKRLVMPAWNRIKKTGICKA---IRMWRDLESLTMPSIANPPYLMEEIAQ---NCRNFRELKIMGP- 183 (308)
Q Consensus 111 d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~l~~~~~~~~~l~~l~~---~~~~L~~L~l~~~- 183 (308)
.+.+..+...+++|++|+|+++..+++.++..+ +...+.|++|+|++|.++++....++. ..+.|++|+++++
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 445666777889999999998767888775554 456789999999999999887766654 4578999999987
Q ss_pred CCHHHHHHHHh---cCCCCcEEEe--eCCCCCHHHHHHH---HHcCCCCCEEecccCC
Q 021719 184 FDLLFASTLNM---YLPKLKVLSL--RCTTLNRDALILI---LDGLQNLEVLNISHCL 233 (308)
Q Consensus 184 ~~~~~~~~l~~---~~p~L~~L~L--~~~~it~~~l~~l---~~~~p~L~~L~l~~C~ 233 (308)
+++.++..++. ..++|++|+| +++.+++++...+ +..+++|++|++++|.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 89988777764 5679999999 8899999985544 4558999999999876
No 11
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.19 E-value=4.9e-10 Score=100.61 Aligned_cols=144 Identities=9% Similarity=0.005 Sum_probs=114.2
Q ss_pred HHHHHhcCCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHh----cCCCCCEEEeCCCCCChH
Q 021719 88 KISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIR----MWRDLESLTMPSIANPPY 163 (308)
Q Consensus 88 ~~~~~~s~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~----~~~~L~~L~l~~~~~~~~ 163 (308)
...+......++.+.++.+ .+++..+..++...++|+.|+|+++ .+++.+...+.. .+++|++|++++|.+++.
T Consensus 93 ~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~ 170 (372)
T 3un9_A 93 AAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAA 170 (372)
T ss_dssp HHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHH
T ss_pred HHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChH
Confidence 3334445578999999876 5788888888888889999999988 788877655543 468999999999998887
Q ss_pred HHHHHH---HcCCCCCeeEecCC-CCHHHHHHHH---hcCCCCcEEEeeCCCCCHHHHHHHH---HcCCCCCEEecccCC
Q 021719 164 LMEEIA---QNCRNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTTLNRDALILIL---DGLQNLEVLNISHCL 233 (308)
Q Consensus 164 ~l~~l~---~~~~~L~~L~l~~~-~~~~~~~~l~---~~~p~L~~L~L~~~~it~~~l~~l~---~~~p~L~~L~l~~C~ 233 (308)
....++ ..+++|++|+++++ +++.++..++ ...++|+.|+|++|.+++.+...+. ..+++|++|+|++|.
T Consensus 171 ~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 171 GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 766664 45789999999988 7777765554 4678999999999999998866654 457999999999886
No 12
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.11 E-value=1.2e-09 Score=98.30 Aligned_cols=113 Identities=17% Similarity=0.158 Sum_probs=50.3
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHH----HHhcCCCCCEEEeCCCCCChHHHHHH---HHcCCCCCeeEecCC-CCHHHHHH
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICK----AIRMWRDLESLTMPSIANPPYLMEEI---AQNCRNFRELKIMGP-FDLLFAST 191 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~----~~~~~~~L~~L~l~~~~~~~~~l~~l---~~~~~~L~~L~l~~~-~~~~~~~~ 191 (308)
.+++|+.|+++++ .+++.++.. .+..+++|+.|++++|.+++.....+ ...+++|++|+++++ +++.++..
T Consensus 185 ~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 185 SHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred hCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 4455555555544 444444222 22244555555555554443222222 123455555555544 44443333
Q ss_pred HHhc-----CCCCcEEEeeCCCCCHHHHHHHH----HcCCCCCEEecccCC
Q 021719 192 LNMY-----LPKLKVLSLRCTTLNRDALILIL----DGLQNLEVLNISHCL 233 (308)
Q Consensus 192 l~~~-----~p~L~~L~L~~~~it~~~l~~l~----~~~p~L~~L~l~~C~ 233 (308)
+... +++|++|+|+++.+++.++..+. ..+|+|++|++++|.
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 3221 45555555555555554322221 234555555555544
No 13
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.10 E-value=1.1e-09 Score=98.42 Aligned_cols=138 Identities=16% Similarity=0.137 Sum_probs=112.4
Q ss_pred CCCccEEEccCCCCCCHHHHHHHHhh----CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHH
Q 021719 95 RGSIRTLIFHFNLYVSDDQLTYTAER----CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQ 170 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~~d~~l~~l~~~----~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~ 170 (308)
...++.+.+..+. +++.....++.. +++|++|+|+++ .+++.++..+...+++|++|++++|.+++.....++.
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 4568899998764 677665555443 469999999988 7889888888888899999999999999888777764
Q ss_pred ----cCCCCCeeEecCC-CCHHHHHHHH---hcCCCCcEEEeeCCCCCHHHHHHHH---HcCCCCCEEecccCCC
Q 021719 171 ----NCRNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTTLNRDALILIL---DGLQNLEVLNISHCLL 234 (308)
Q Consensus 171 ----~~~~L~~L~l~~~-~~~~~~~~l~---~~~p~L~~L~L~~~~it~~~l~~l~---~~~p~L~~L~l~~C~~ 234 (308)
.+++|++|+++++ +++.++..++ ..+++|++|+|++|.+++.++..+. ..+++|++|+|++|..
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 3689999999998 7776665553 5789999999999999998876655 4578999999999863
No 14
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.06 E-value=1.3e-08 Score=91.55 Aligned_cols=141 Identities=19% Similarity=0.232 Sum_probs=108.4
Q ss_pred cCCCccEEEccCCCCCCHHHHHHHHh---hC---------CCCcEEEcCCCCCCCHHHHH---HHHhcCCCCCEEEeCCC
Q 021719 94 SRGSIRTLIFHFNLYVSDDQLTYTAE---RC---------PQLKRLVMPAWNRIKKTGIC---KAIRMWRDLESLTMPSI 158 (308)
Q Consensus 94 s~~~l~~l~l~~~~~~~d~~l~~l~~---~~---------~~L~~L~L~~~~~~~~~~l~---~~~~~~~~L~~L~l~~~ 158 (308)
....++.+.+..+. +++.....++. .+ ++|+.|+++++ .+++.++. ..+..+++|++|++++|
T Consensus 120 ~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n 197 (386)
T 2ca6_A 120 KHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQN 197 (386)
T ss_dssp HCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred hCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCCcCEEECcCC
Confidence 36789999998875 56555444433 33 89999999988 56544444 56679999999999999
Q ss_pred CCChHHHHHHHH----cCCCCCeeEecCC-CCHHHHHHH---HhcCCCCcEEEeeCCCCCHHHHHHHHHc-----CCCCC
Q 021719 159 ANPPYLMEEIAQ----NCRNFRELKIMGP-FDLLFASTL---NMYLPKLKVLSLRCTTLNRDALILILDG-----LQNLE 225 (308)
Q Consensus 159 ~~~~~~l~~l~~----~~~~L~~L~l~~~-~~~~~~~~l---~~~~p~L~~L~L~~~~it~~~l~~l~~~-----~p~L~ 225 (308)
.+++..+..+.. .+++|+.|+++++ +++.++..+ ...+++|++|+|+++.+++.+...+... +++|+
T Consensus 198 ~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~ 277 (386)
T 2ca6_A 198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ 277 (386)
T ss_dssp CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCC
T ss_pred CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeE
Confidence 999877555544 7899999999988 665544433 4688999999999999999877655542 89999
Q ss_pred EEecccCCCcC
Q 021719 226 VLNISHCLLID 236 (308)
Q Consensus 226 ~L~l~~C~~i~ 236 (308)
+|+|++|..-+
T Consensus 278 ~L~L~~n~i~~ 288 (386)
T 2ca6_A 278 TLRLQYNEIEL 288 (386)
T ss_dssp EEECCSSCCBH
T ss_pred EEECcCCcCCH
Confidence 99999986433
No 15
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.00 E-value=4.8e-09 Score=96.45 Aligned_cols=137 Identities=11% Similarity=0.094 Sum_probs=101.9
Q ss_pred CCCccEEEccCCCCCCHHHHH---HHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCC----CCCEEEeCCCCCChHH---
Q 021719 95 RGSIRTLIFHFNLYVSDDQLT---YTAERCPQLKRLVMPAWNRIKKTGICKAIRMWR----DLESLTMPSIANPPYL--- 164 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~~d~~l~---~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~----~L~~L~l~~~~~~~~~--- 164 (308)
.+.++.+.+..+. +++.... .....+++|++|+++++ .+++.++..+...++ +|++|++++|.+++..
T Consensus 27 ~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 27 LQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp HTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred cCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 4578889888765 5665433 33455799999999986 677777777777776 7999999999887644
Q ss_pred HHHHHHcCCCCCeeEecCC-CCHHHHHHHHhc----CCCCcEEEeeCCCCCHHHH---HHHHHcCCCCCEEecccCC
Q 021719 165 MEEIAQNCRNFRELKIMGP-FDLLFASTLNMY----LPKLKVLSLRCTTLNRDAL---ILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 165 l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~----~p~L~~L~L~~~~it~~~l---~~l~~~~p~L~~L~l~~C~ 233 (308)
+......+++|++|+++++ +++.++..+... .++|++|+++++.+++.+. ...+..+++|++|++++|.
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 3333346889999999887 666666655543 5679999999888887553 4455668999999999887
No 16
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.97 E-value=9.2e-09 Score=94.54 Aligned_cols=111 Identities=17% Similarity=0.196 Sum_probs=49.8
Q ss_pred CCCCcEEEcCCCCCCCHHH---HHHHHhcCCCCCEEEeCCCCCChHHHHHHHHc----CCCCCeeEecCC-CCHHH---H
Q 021719 121 CPQLKRLVMPAWNRIKKTG---ICKAIRMWRDLESLTMPSIANPPYLMEEIAQN----CRNFRELKIMGP-FDLLF---A 189 (308)
Q Consensus 121 ~~~L~~L~L~~~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~----~~~L~~L~l~~~-~~~~~---~ 189 (308)
+++|+.|+++++ .+++.+ +...+..+++|++|+++++.+++.....++.. .++|++|+++++ +++.+ +
T Consensus 255 ~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 333 (461)
T 1z7x_W 255 SSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF 333 (461)
T ss_dssp TCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH
Confidence 444555555544 344433 22333345555555555554444433333321 134444444443 22221 1
Q ss_pred HHHHhcCCCCcEEEeeCCCCCHHHHHHHHHc----CCCCCEEecccC
Q 021719 190 STLNMYLPKLKVLSLRCTTLNRDALILILDG----LQNLEVLNISHC 232 (308)
Q Consensus 190 ~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~----~p~L~~L~l~~C 232 (308)
......+++|++|+++++.+++.++..+... +++|++|++++|
T Consensus 334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 1222344555555555555555554444332 445555555555
No 17
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.82 E-value=1.5e-07 Score=75.75 Aligned_cols=128 Identities=13% Similarity=0.052 Sum_probs=100.3
Q ss_pred HHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHHHh---hCCCCcEEEcCCCCCCCHHHHHH---HHhcCCCCCEEEeCC
Q 021719 84 TRILKISLSLSRGSIRTLIFHFNLYVSDDQLTYTAE---RCPQLKRLVMPAWNRIKKTGICK---AIRMWRDLESLTMPS 157 (308)
Q Consensus 84 ~~~l~~~~~~s~~~l~~l~l~~~~~~~d~~l~~l~~---~~~~L~~L~L~~~~~~~~~~l~~---~~~~~~~L~~L~l~~ 157 (308)
.+.+..++ .....++.+.+..+..+++.....++. .+++|++|+|+++ .+++.+... .+...+.|++|+|++
T Consensus 25 ~~~l~~~l-~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 25 EETLKRIQ-NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHHHHHHH-TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHH-hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC
Confidence 33444333 347789999998775788887776654 4789999999988 688877544 455678999999999
Q ss_pred CCCChHHHHHHHH---cCCCCCeeEe--cCC-CCHHHHHHHH---hcCCCCcEEEeeCCCCCHHH
Q 021719 158 IANPPYLMEEIAQ---NCRNFRELKI--MGP-FDLLFASTLN---MYLPKLKVLSLRCTTLNRDA 213 (308)
Q Consensus 158 ~~~~~~~l~~l~~---~~~~L~~L~l--~~~-~~~~~~~~l~---~~~p~L~~L~L~~~~it~~~ 213 (308)
|.++++....++. .++.|++|++ .++ +++.++..++ ...++|++|+|+++.+++.+
T Consensus 103 N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 103 NFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp SCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 9999998877765 4578999999 666 8888766554 46789999999999998876
No 18
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.81 E-value=1.6e-09 Score=83.99 Aligned_cols=107 Identities=18% Similarity=0.143 Sum_probs=54.9
Q ss_pred hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCC
Q 021719 119 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLP 197 (308)
Q Consensus 119 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p 197 (308)
..+++|+.|+++++ .++.. ..+..+++|+.|+++++.++.. +......+++|+.|+++++ +++.........++
T Consensus 39 ~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~ 113 (149)
T 2je0_A 39 DEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLE 113 (149)
T ss_dssp TTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCT
T ss_pred hhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCC
Confidence 34566666666655 33221 3345566666666666655432 2223334566666666655 43322222234566
Q ss_pred CCcEEEeeCCCCCHHHH--HHHHHcCCCCCEEecc
Q 021719 198 KLKVLSLRCTTLNRDAL--ILILDGLQNLEVLNIS 230 (308)
Q Consensus 198 ~L~~L~L~~~~it~~~l--~~l~~~~p~L~~L~l~ 230 (308)
+|++|+++++.++...- ...+..+|+|+.|+++
T Consensus 114 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 114 NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 66666666655543221 1344556666666654
No 19
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.78 E-value=2.5e-07 Score=82.48 Aligned_cols=39 Identities=8% Similarity=0.042 Sum_probs=17.0
Q ss_pred CCCcEEEcCCCCCCC---HHHHHHHHhcC-CCCCEEEeCCCCCC
Q 021719 122 PQLKRLVMPAWNRIK---KTGICKAIRMW-RDLESLTMPSIANP 161 (308)
Q Consensus 122 ~~L~~L~L~~~~~~~---~~~l~~~~~~~-~~L~~L~l~~~~~~ 161 (308)
++|++|+|+++. ++ ...+...+..+ ++|++|++++|.++
T Consensus 80 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 80 ANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp TTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred CCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence 455555555442 22 22233333333 45555555555433
No 20
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.74 E-value=2.6e-09 Score=82.83 Aligned_cols=111 Identities=18% Similarity=0.225 Sum_probs=83.1
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCC
Q 021719 121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL 199 (308)
Q Consensus 121 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L 199 (308)
.++|+.|+++++ .+++..+...+..+++|+.|+++++.++.. .. ...+++|+.|+++++ ++.. +......+++|
T Consensus 16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI--AN-LPKLNKLKKLELSDNRVSGG-LEVLAEKCPNL 90 (149)
T ss_dssp GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TT-CCCCTTCCEEECCSSCCCSC-THHHHHHCTTC
T ss_pred CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc--hh-hhcCCCCCEEECCCCcccch-HHHHhhhCCCC
Confidence 467999999988 444223344557889999999999977644 33 335899999999987 4432 23344579999
Q ss_pred cEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 200 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 200 ~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
++|+++++.+++......+..+++|++|++++|...+
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 9999999999875544556789999999999985433
No 21
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.73 E-value=5.7e-10 Score=88.47 Aligned_cols=138 Identities=14% Similarity=0.074 Sum_probs=94.6
Q ss_pred cCCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCC
Q 021719 94 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR 173 (308)
Q Consensus 94 s~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~ 173 (308)
....++.+.+..+. +++..+......+++|+.|+++++. ++.. ..+..+++|+.|++++|.+... +..+...++
T Consensus 22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~ 95 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRIFGG-LDMLAEKLP 95 (168)
T ss_dssp CTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCT
T ss_pred CcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcCchH-HHHHHhhCC
Confidence 34678888887764 2211222223467899999999874 4432 4567889999999999976643 334444689
Q ss_pred CCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHH--HHHHHcCCCCCEEecccCCCcCC
Q 021719 174 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDAL--ILILDGLQNLEVLNISHCLLIDV 237 (308)
Q Consensus 174 ~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l--~~l~~~~p~L~~L~l~~C~~i~~ 237 (308)
+|+.|+++++ +++.........+++|++|+++++.++.... ...+..+|+|++|++++|.....
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 9999999887 4432111234578999999999887764332 24667899999999999875543
No 22
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.67 E-value=5e-08 Score=87.07 Aligned_cols=135 Identities=16% Similarity=0.179 Sum_probs=92.1
Q ss_pred CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHh-cCCCCCEEEeCCC---CCChH---HHHH
Q 021719 95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIR-MWRDLESLTMPSI---ANPPY---LMEE 167 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~---~~~~~---~l~~ 167 (308)
.+.++.|.+.++.... +..+ ..++|++|+|..+ .+++.++..+.. .+|+|++|+|+.+ ...+. .+..
T Consensus 171 ~P~L~~L~L~g~~~l~---l~~~--~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLS---IGKK--PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp CTTCCEEEEECCBTCB---CCSC--BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred CCCCcEEEEeCCCCce---eccc--cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 5677888776552211 1111 2678888888765 577777776664 7899999998642 11111 1111
Q ss_pred HH--HcCCCCCeeEecCC-CCHHHHHHHHh--cCCCCcEEEeeCCCCCHHHHHHHHH---cCCCCCEEecccCCCcC
Q 021719 168 IA--QNCRNFRELKIMGP-FDLLFASTLNM--YLPKLKVLSLRCTTLNRDALILILD---GLQNLEVLNISHCLLID 236 (308)
Q Consensus 168 l~--~~~~~L~~L~l~~~-~~~~~~~~l~~--~~p~L~~L~L~~~~it~~~l~~l~~---~~p~L~~L~l~~C~~i~ 236 (308)
+. ..+|+|+.|.+..+ +++.....++. .+|+|++|+|+++.+++.+...+.. .+++|+.|++++|. ++
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~ 320 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY-LS 320 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CC
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc-CC
Confidence 11 24789999999776 66666555553 5889999999999999998877764 47999999999885 55
No 23
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.62 E-value=2.1e-07 Score=83.04 Aligned_cols=140 Identities=13% Similarity=0.077 Sum_probs=95.8
Q ss_pred CCCccEEEccCCCCCCH---HHHHHHHhhCC-CCcEEEcCCCCCCCH---HHHHHHHhcC-CCCCEEEeCCCCCChHHHH
Q 021719 95 RGSIRTLIFHFNLYVSD---DQLTYTAERCP-QLKRLVMPAWNRIKK---TGICKAIRMW-RDLESLTMPSIANPPYLME 166 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~~d---~~l~~l~~~~~-~L~~L~L~~~~~~~~---~~l~~~~~~~-~~L~~L~l~~~~~~~~~l~ 166 (308)
...++.+.++.+. +++ ..+......++ +|++|+|+++ .+++ ..+...+... ++|++|++++|.+++....
T Consensus 21 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 21 PHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp CTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 4559999998765 333 23333344577 8999999988 4543 4455555555 9999999999976544333
Q ss_pred ---HHHHcC-CCCCeeEecCC-CCHH---HHHHHHhc-CCCCcEEEeeCCCCCHHHHHHH---HHcCC-CCCEEecccCC
Q 021719 167 ---EIAQNC-RNFRELKIMGP-FDLL---FASTLNMY-LPKLKVLSLRCTTLNRDALILI---LDGLQ-NLEVLNISHCL 233 (308)
Q Consensus 167 ---~l~~~~-~~L~~L~l~~~-~~~~---~~~~l~~~-~p~L~~L~L~~~~it~~~l~~l---~~~~p-~L~~L~l~~C~ 233 (308)
.....+ ++|++|+++++ +++. .+...... .++|++|+|+++.+++.+...+ +...+ +|++|++++|.
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 333344 89999999987 4433 33333334 4699999999999886554444 44565 99999999996
Q ss_pred CcC
Q 021719 234 LID 236 (308)
Q Consensus 234 ~i~ 236 (308)
..+
T Consensus 179 l~~ 181 (362)
T 3goz_A 179 LAS 181 (362)
T ss_dssp GGG
T ss_pred Cch
Confidence 444
No 24
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.61 E-value=4.2e-09 Score=89.40 Aligned_cols=49 Identities=20% Similarity=0.409 Sum_probs=45.0
Q ss_pred CcCCCCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCcceeeeccc
Q 021719 10 RWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLDLSM 59 (308)
Q Consensus 10 ~~~~LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~l~~ 59 (308)
.|++||+||+.+||+||+.+|+++ +++|||+||.++.++.||+.+-.+.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~-l~~vcr~Wr~la~D~~LWr~~l~rd 52 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQ-LGSTNHYWNETVRDPILWRYFLLRD 52 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHH-HHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHhccchHHHHHHhcc
Confidence 378899999999999999999999 9999999999999999999876543
No 25
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.58 E-value=1.7e-06 Score=69.98 Aligned_cols=122 Identities=13% Similarity=0.164 Sum_probs=94.7
Q ss_pred HHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHH---hcCCCCCEEEeCCCCCChHHHHHHHH---cCCCCCeeEecCC-
Q 021719 111 DDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAI---RMWRDLESLTMPSIANPPYLMEEIAQ---NCRNFRELKIMGP- 183 (308)
Q Consensus 111 d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~---~~~~~L~~L~l~~~~~~~~~l~~l~~---~~~~L~~L~l~~~- 183 (308)
++.+..+....+.|++|+|+....+.+.+...++ ..-..|++|+|++|.+++....+|+. ..+.|++|+|+.+
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 4567777777889999999876578887755544 45568999999999999887766664 4578999999887
Q ss_pred CCHHHHHHHHhcC---CCCcEEEeeC--C-CCCHHH---HHHHHHcCCCCCEEecccC
Q 021719 184 FDLLFASTLNMYL---PKLKVLSLRC--T-TLNRDA---LILILDGLQNLEVLNISHC 232 (308)
Q Consensus 184 ~~~~~~~~l~~~~---p~L~~L~L~~--~-~it~~~---l~~l~~~~p~L~~L~l~~C 232 (308)
+++.++.++++.+ ..|++|+|++ + .+++.+ +...++.-+.|+.|+++.+
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 9999988887654 4799999984 3 678876 4555667899999999754
No 26
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.55 E-value=2.2e-08 Score=81.41 Aligned_cols=106 Identities=19% Similarity=0.191 Sum_probs=60.9
Q ss_pred hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCC
Q 021719 119 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLP 197 (308)
Q Consensus 119 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p 197 (308)
..+++|+.|+++++ .+++. ..+..+++|++|+++++.+++.....+. .+++|+.|+++++ +++.....+ ..++
T Consensus 63 ~~l~~L~~L~l~~n-~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~~l-~~l~ 136 (197)
T 4ezg_A 63 EYAHNIKDLTINNI-HATNY---NPISGLSNLERLRIMGKDVTSDKIPNLS-GLTSLTLLDISHSAHDDSILTKI-NTLP 136 (197)
T ss_dssp GGCTTCSEEEEESC-CCSCC---GGGTTCTTCCEEEEECTTCBGGGSCCCT-TCTTCCEEECCSSBCBGGGHHHH-TTCS
T ss_pred hcCCCCCEEEccCC-CCCcc---hhhhcCCCCCEEEeECCccCcccChhhc-CCCCCCEEEecCCccCcHhHHHH-hhCC
Confidence 34667777777766 33321 1345567777777777665543333333 3667777777665 443333333 3667
Q ss_pred CCcEEEeeCCC-CCHHHHHHHHHcCCCCCEEecccCC
Q 021719 198 KLKVLSLRCTT-LNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 198 ~L~~L~L~~~~-it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
+|++|+++++. +++-. .+..+++|+.|++++|.
T Consensus 137 ~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 137 KVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp SCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBC
T ss_pred CCCEEEccCCCCccccH---hhcCCCCCCEEECCCCC
Confidence 77777777665 55432 24556777777777665
No 27
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.54 E-value=4.2e-07 Score=81.06 Aligned_cols=135 Identities=13% Similarity=0.099 Sum_probs=100.6
Q ss_pred CCCccEEEccCCCCCCHHHHHHHHh-hCCCCcEEEcCCCCC--CC---HHHHHHHH--hcCCCCCEEEeCCCCCChHHHH
Q 021719 95 RGSIRTLIFHFNLYVSDDQLTYTAE-RCPQLKRLVMPAWNR--IK---KTGICKAI--RMWRDLESLTMPSIANPPYLME 166 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~~d~~l~~l~~-~~~~L~~L~L~~~~~--~~---~~~l~~~~--~~~~~L~~L~l~~~~~~~~~l~ 166 (308)
..+++.|.+..+ .++++.+..++. .+|+|++|+|..... .. ...+...+ ..+|+|+.|++.+|.+++....
T Consensus 192 ~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~ 270 (362)
T 2ra8_A 192 RPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE 270 (362)
T ss_dssp CTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred CCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence 467889998754 578888888875 689999999863211 11 11122222 3589999999999988877766
Q ss_pred HHHH--cCCCCCeeEecCC-CCHHHHHHHH---hcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccC
Q 021719 167 EIAQ--NCRNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHC 232 (308)
Q Consensus 167 ~l~~--~~~~L~~L~l~~~-~~~~~~~~l~---~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C 232 (308)
.++. .+|+|++|+++.+ +++.++.++. +.+++|+.|+|+.+.+++.++..+.+.+ ...++++.-
T Consensus 271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~ 340 (362)
T 2ra8_A 271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDS 340 (362)
T ss_dssp HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSB
T ss_pred HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCC
Confidence 6665 5689999999887 8888877765 4589999999999999999998887755 345666643
No 28
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.53 E-value=2.7e-08 Score=85.30 Aligned_cols=48 Identities=19% Similarity=0.385 Sum_probs=44.1
Q ss_pred CCcCCCCHHHHHHHhcCCChHHHh-hHHhHhhHHHHHhccCCCcceeeec
Q 021719 9 RRWEDLDNDILVKIFQSFDIFELT-SGIAHVCSSWRSACCDPLLWKTLDL 57 (308)
Q Consensus 9 ~~~~~LP~eiL~~If~~L~~~d~~-~~~s~VCr~Wr~~~~~p~lw~~i~l 57 (308)
..+..||+|||.+||.+|+.++++ + +++|||+|+.++.+|.+|+..-.
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r-~~~VCk~Wr~l~~~~~~w~~~~~ 97 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQA-CRLVCLRWKELVDGAPLWLLKCQ 97 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHT-GGGTCHHHHHHHTSHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHH-HHHHhHHHHHHhcChHHHHHHhh
Confidence 467899999999999999999999 8 99999999999999999987643
No 29
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.52 E-value=7e-09 Score=82.09 Aligned_cols=112 Identities=17% Similarity=0.199 Sum_probs=81.8
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
..++|+.|+++++. +++..+...+..+++|+.|++++|.+... ..+ ..+++|+.|+++++ +... +......+++
T Consensus 22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~-~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~ 96 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV--SNL-PKLPKLKKLELSENRIFGG-LDMLAEKLPN 96 (168)
T ss_dssp CTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSC-CCCSSCCEEEEESCCCCSC-CCHHHHHCTT
T ss_pred CcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhh-ccCCCCCEEECcCCcCchH-HHHHHhhCCC
Confidence 34789999999884 44323344467889999999999977644 333 35899999999987 4331 2234457999
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
|++|+++++.+++......+..+++|++|++++|...+
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence 99999999998864322345679999999999986444
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.44 E-value=3.3e-07 Score=80.93 Aligned_cols=127 Identities=15% Similarity=0.159 Sum_probs=88.7
Q ss_pred CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021719 95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 174 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 174 (308)
...++.+.+..+....... ...+++|+.|+++++....... +..+++|++|+++++.++.- .. ...+++
T Consensus 198 l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~ 266 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTNQISDI--NA-VKDLTK 266 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCC--GG-GTTCTT
T ss_pred CCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCcc----hhcCCCCCEEECCCCccCCC--hh-HhcCCC
Confidence 4567778776654332221 4568899999999874332211 67889999999999866542 22 335789
Q ss_pred CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
|+.|+++++ +++. .....+++|+.|+++++.++..... .+..+++|++|++++|...+
T Consensus 267 L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 267 LKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp CCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECCSSSCCC
T ss_pred cCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChh-HhhccccCCEEEccCCcccc
Confidence 999999887 4332 1245789999999998888765543 34678999999999987443
No 31
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.41 E-value=1.2e-07 Score=77.07 Aligned_cols=126 Identities=13% Similarity=0.107 Sum_probs=92.2
Q ss_pred CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021719 95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 174 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 174 (308)
...++.+.+..+....- . ....+++|++|+++++ .++... ...+..+++|+.|+++++.+++.....+. .+++
T Consensus 65 l~~L~~L~l~~n~~~~~---~-~l~~l~~L~~L~l~~n-~l~~~~-~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~-~l~~ 137 (197)
T 4ezg_A 65 AHNIKDLTINNIHATNY---N-PISGLSNLERLRIMGK-DVTSDK-IPNLSGLTSLTLLDISHSAHDDSILTKIN-TLPK 137 (197)
T ss_dssp CTTCSEEEEESCCCSCC---G-GGTTCTTCCEEEEECT-TCBGGG-SCCCTTCTTCCEEECCSSBCBGGGHHHHT-TCSS
T ss_pred CCCCCEEEccCCCCCcc---h-hhhcCCCCCEEEeECC-ccCccc-ChhhcCCCCCCEEEecCCccCcHhHHHHh-hCCC
Confidence 45788888877632221 1 2335899999999987 444322 22356789999999999988876666665 5899
Q ss_pred CCeeEecCC--CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 175 FRELKIMGP--FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 175 L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
|+.|+++++ +++- . ....+++|++|+++++.+++-. .+..+|+|++|++++..
T Consensus 138 L~~L~L~~n~~i~~~--~-~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 138 VNSIDLSYNGAITDI--M-PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCEEECCSCTBCCCC--G-GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC-
T ss_pred CCEEEccCCCCcccc--H-hhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCcc
Confidence 999999887 3332 1 2458999999999998887632 45679999999998764
No 32
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.30 E-value=2e-07 Score=74.31 Aligned_cols=131 Identities=14% Similarity=0.079 Sum_probs=81.7
Q ss_pred CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021719 95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 174 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 174 (308)
...++.+.+.++.... +..+....++|+.|+++++ .++.- ..+..+++|+.|+++++.++.-. ..+...+++
T Consensus 18 ~~~L~~L~l~~n~l~~---i~~~~~~~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~ 89 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV---IENLGATLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNNRICRIG-EGLDQALPD 89 (176)
T ss_dssp TTSCEEEECTTSCCCS---CCCGGGGTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTT
T ss_pred cCCceEEEeeCCCCch---hHHhhhcCCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCCcccccC-cchhhcCCC
Confidence 3456677776553221 1234445568999998887 44331 34567888999999888665321 112235788
Q ss_pred CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHH--HHHHHHcCCCCCEEecccCC
Q 021719 175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDA--LILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~--l~~l~~~~p~L~~L~l~~C~ 233 (308)
|+.|+++++ +++-........+++|+.|+++++.++... -..++..+|+|+.|+++++.
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 999998876 432111112347888999999877765321 12346678899999888765
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.25 E-value=2.4e-06 Score=75.35 Aligned_cols=125 Identities=16% Similarity=0.099 Sum_probs=89.7
Q ss_pred cCCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCC
Q 021719 94 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR 173 (308)
Q Consensus 94 s~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~ 173 (308)
....++.+.+..+....... ...+++|+.|++.++....... +..+++|++|++++|.++.... ...++
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~---~~~l~ 243 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLSP---LANLS 243 (347)
T ss_dssp GCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG---GTTCT
T ss_pred cCCCCCEEEccCCccccccc----ccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCcc---hhcCC
Confidence 35678888887765432222 4568999999999874332221 6789999999999996653222 34689
Q ss_pred CCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021719 174 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 235 (308)
Q Consensus 174 ~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i 235 (308)
+|++|+++++ +++. .....+++|++|+++++.+++. ..+..+++|+.|++++|...
T Consensus 244 ~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~ 300 (347)
T 4fmz_A 244 QLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLG 300 (347)
T ss_dssp TCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCC
T ss_pred CCCEEECCCCccCCC---hhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCC
Confidence 9999999887 4331 1245889999999998888764 23567999999999998643
No 34
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.22 E-value=1.5e-06 Score=75.02 Aligned_cols=100 Identities=20% Similarity=0.235 Sum_probs=46.9
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
.+++|+.|+++++. ++.. ..+..+++|++|+++++.+.+- ..+. .+++|+.|+++++ +++- .....+++
T Consensus 88 ~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L~~n~i~~~--~~l~-~l~~L~~L~l~~n~l~~~---~~l~~l~~ 157 (291)
T 1h6t_A 88 NLKNLGWLFLDENK-VKDL---SSLKDLKKLKSLSLEHNGISDI--NGLV-HLPQLESLYLGNNKITDI---TVLSRLTK 157 (291)
T ss_dssp TCTTCCEEECCSSC-CCCG---GGGTTCTTCCEEECTTSCCCCC--GGGG-GCTTCCEEECCSSCCCCC---GGGGGCTT
T ss_pred cCCCCCEEECCCCc-CCCC---hhhccCCCCCEEECCCCcCCCC--hhhc-CCCCCCEEEccCCcCCcc---hhhccCCC
Confidence 45556666666542 2221 1144555666666655544321 1122 3555666655554 2221 11234555
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccC
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHC 232 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C 232 (308)
|++|+++++.+++..- +..+++|++|++++|
T Consensus 158 L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 158 LDTLSLEDNQISDIVP---LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CSEEECCSSCCCCCGG---GTTCTTCCEEECCSS
T ss_pred CCEEEccCCccccchh---hcCCCccCEEECCCC
Confidence 5555555555443221 344555555555555
No 35
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.16 E-value=1.3e-06 Score=83.21 Aligned_cols=36 Identities=33% Similarity=0.330 Sum_probs=16.2
Q ss_pred cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
.+++|+.|+|+++.+++- .-+..+++|+.|+|++|.
T Consensus 173 ~l~~L~~L~Ls~N~i~~l---~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp TCTTCCEEECCSSCCCBC---GGGTTCTTCSEEECCSEE
T ss_pred cCCCCCEEECcCCCCCCC---hHHccCCCCCEEEccCCc
Confidence 445555555554444431 112334555555555443
No 36
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.16 E-value=2.5e-05 Score=63.02 Aligned_cols=98 Identities=13% Similarity=0.152 Sum_probs=81.3
Q ss_pred HHHHHHHHhcCCCCCEEEeCCC-CCChHHHHHHHHc---CCCCCeeEecCC-CCHHHHHHHH---hcCCCCcEEEeeCCC
Q 021719 137 KTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQN---CRNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTT 208 (308)
Q Consensus 137 ~~~l~~~~~~~~~L~~L~l~~~-~~~~~~l~~l~~~---~~~L~~L~l~~~-~~~~~~~~l~---~~~p~L~~L~L~~~~ 208 (308)
+..+..+...-+.|++|+|+++ .++++....++.. -..|+.|+|+++ ++|.++.+++ +.-..|++|+|+.+.
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 4567778888899999999986 8998887777663 357999999988 9998877665 355799999999999
Q ss_pred CCHHHHHHHHHcC---CCCCEEecccCCC
Q 021719 209 LNRDALILILDGL---QNLEVLNISHCLL 234 (308)
Q Consensus 209 it~~~l~~l~~~~---p~L~~L~l~~C~~ 234 (308)
|++.|..+|.+.+ +.|++|+|+++..
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~ 138 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQ 138 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcC
Confidence 9999999888764 6799999997643
No 37
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.15 E-value=2.8e-07 Score=84.23 Aligned_cols=47 Identities=26% Similarity=0.424 Sum_probs=43.3
Q ss_pred cCCCCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhccC-CCcceeeecc
Q 021719 11 WEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCD-PLLWKTLDLS 58 (308)
Q Consensus 11 ~~~LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~-p~lw~~i~l~ 58 (308)
+..||+||+.+||+||+.+++++ +++|||+|++++.+ +.+|+.+-+.
T Consensus 15 ~~~lp~~~~~~i~~~l~~~~l~~-~~~v~~~w~~~~~~~~~~w~~~~~~ 62 (464)
T 3v7d_B 15 ITSLPFEISLKIFNYLQFEDIIN-SLGVSQNWNKIIRKSTSLWKKLLIS 62 (464)
T ss_dssp HHHSCHHHHHHHHTTSCHHHHHH-HHTTCHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHCCHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHhc
Confidence 47899999999999999999999 99999999999998 8999987654
No 38
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.15 E-value=2.4e-06 Score=74.42 Aligned_cols=122 Identities=16% Similarity=0.090 Sum_probs=62.3
Q ss_pred CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCC
Q 021719 96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF 175 (308)
Q Consensus 96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L 175 (308)
..++.+.+..+....-. -...+++|+.|+++++. ++.. . .+..+++|++|+++++.++.... ...+++|
T Consensus 85 ~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L 153 (308)
T 1h6u_A 85 TKITELELSGNPLKNVS----AIAGLQSIKTLDLTSTQ-ITDV--T-PLAGLSNLQVLYLDLNQITNISP---LAGLTNL 153 (308)
T ss_dssp CSCCEEECCSCCCSCCG----GGTTCTTCCEEECTTSC-CCCC--G-GGTTCTTCCEEECCSSCCCCCGG---GGGCTTC
T ss_pred CCCCEEEccCCcCCCch----hhcCCCCCCEEECCCCC-CCCc--h-hhcCCCCCCEEECCCCccCcCcc---ccCCCCc
Confidence 45555555544322111 12245666666666652 2221 1 14566666666666664432111 2245666
Q ss_pred CeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCC
Q 021719 176 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 234 (308)
Q Consensus 176 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~ 234 (308)
+.|+++++ +++-.. ...+++|+.|+++++.+++.. . +..+++|++|++++|..
T Consensus 154 ~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 154 QYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDIS--P-LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp CEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG--G-GGGCTTCCEEECTTSCC
T ss_pred cEEEccCCcCCCChh---hcCCCCCCEEECCCCccCcCh--h-hcCCCCCCEEEccCCcc
Confidence 67666655 322111 346667777777666655322 1 45567777777766643
No 39
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.14 E-value=2.3e-06 Score=74.54 Aligned_cols=125 Identities=15% Similarity=0.113 Sum_probs=86.1
Q ss_pred CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021719 95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 174 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 174 (308)
...++.+.+..+....-.. ...+++|+.|+++++. ++.. ..+..+++|++|+++++.+++- .. ...+++
T Consensus 62 l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~-l~~~---~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~ 130 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAP----LKNLTKITELELSGNP-LKNV---SAIAGLQSIKTLDLTSTQITDV--TP-LAGLSN 130 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCC-CSCC---GGGTTCTTCCEEECTTSCCCCC--GG-GTTCTT
T ss_pred cCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCc-CCCc---hhhcCCCCCCEEECCCCCCCCc--hh-hcCCCC
Confidence 4567788887654322111 4567889999999874 4331 2366788999999999866532 22 345889
Q ss_pred CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
|+.|+++++ ++.... ...+++|++|+++++.+++.. . +..+++|+.|++++|...+
T Consensus 131 L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 131 LQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLT--P-LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp CCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCC
T ss_pred CCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCCh--h-hcCCCCCCEEECCCCccCc
Confidence 999999876 332111 458899999999988877532 2 5678999999999886433
No 40
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.13 E-value=1.7e-06 Score=74.66 Aligned_cols=125 Identities=18% Similarity=0.146 Sum_probs=91.4
Q ss_pred CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021719 95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 174 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 174 (308)
...++.+.+..+....- .. ...+++|+.|+++++. ++.. ..+..+++|+.|+++++.++.- ..+ ..+++
T Consensus 89 l~~L~~L~l~~n~l~~~---~~-l~~l~~L~~L~L~~n~-i~~~---~~l~~l~~L~~L~l~~n~l~~~--~~l-~~l~~ 157 (291)
T 1h6t_A 89 LKNLGWLFLDENKVKDL---SS-LKDLKKLKSLSLEHNG-ISDI---NGLVHLPQLESLYLGNNKITDI--TVL-SRLTK 157 (291)
T ss_dssp CTTCCEEECCSSCCCCG---GG-GTTCTTCCEEECTTSC-CCCC---GGGGGCTTCCEEECCSSCCCCC--GGG-GGCTT
T ss_pred CCCCCEEECCCCcCCCC---hh-hccCCCCCEEECCCCc-CCCC---hhhcCCCCCCEEEccCCcCCcc--hhh-ccCCC
Confidence 46788888877643331 12 3568999999999884 4331 3467899999999999976643 233 36899
Q ss_pred CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
|+.|+++++ +++... ...+++|++|+++++.+++- .. +..+++|+.|+++++....
T Consensus 158 L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l--~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 158 LDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL--RA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC--GG-GTTCTTCSEEEEEEEEEEC
T ss_pred CCEEEccCCccccchh---hcCCCccCEEECCCCcCCCC--hh-hccCCCCCEEECcCCcccC
Confidence 999999987 443221 45899999999999988763 23 5679999999999886444
No 41
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.13 E-value=2.7e-07 Score=73.51 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=78.1
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
.+++|+.|+++++ .++. +..+....++|+.|+++++.++.- ..+ ..+++|+.|+++++ ++.- ...+...+++
T Consensus 17 ~~~~L~~L~l~~n-~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--~~l-~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~ 89 (176)
T 1a9n_A 17 NAVRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSDNEIRKL--DGF-PLLRRLKTLLVNNNRICRI-GEGLDQALPD 89 (176)
T ss_dssp CTTSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCSSCCCEE--CCC-CCCSSCCEEECCSSCCCEE-CSCHHHHCTT
T ss_pred CcCCceEEEeeCC-CCch--hHHhhhcCCCCCEEECCCCCCCcc--ccc-ccCCCCCEEECCCCccccc-CcchhhcCCC
Confidence 4688999999987 4432 233444556999999999977643 233 35789999999987 4321 1122357999
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
|++|+++++.+++-.-...+..+++|+.|+++++...+
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~ 127 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 127 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC
Confidence 99999999998753221245679999999999987544
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.11 E-value=9e-08 Score=84.28 Aligned_cols=40 Identities=30% Similarity=0.438 Sum_probs=20.7
Q ss_pred cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
.+++|++|+|+++.++. +..-+..+++|++|++++|...+
T Consensus 204 ~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~ 243 (328)
T 4fcg_A 204 NLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALR 243 (328)
T ss_dssp GCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCC
T ss_pred CCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchh
Confidence 55566666666555542 22223445666666666655443
No 43
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.10 E-value=7.9e-07 Score=77.52 Aligned_cols=110 Identities=20% Similarity=0.212 Sum_probs=55.4
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChH--HHHHHH-HcCCCCCeeEecCC-CC--HHHHHHHHhc
Q 021719 122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPY--LMEEIA-QNCRNFRELKIMGP-FD--LLFASTLNMY 195 (308)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~--~l~~l~-~~~~~L~~L~l~~~-~~--~~~~~~l~~~ 195 (308)
++|++|+++++. ++.. ....+..+++|++|+++++.+... ....+. ..+++|++|+++++ ++ +.....+...
T Consensus 149 ~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 226 (312)
T 1wwl_A 149 PGLKVLSIAQAH-SLNF-SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226 (312)
T ss_dssp TTCCEEEEESCS-CCCC-CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHT
T ss_pred CCCcEEEeeCCC-Cccc-hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhc
Confidence 567777666552 2110 012234566667777766654432 122221 34566666666665 33 1223334445
Q ss_pred CCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 196 LPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 196 ~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
+++|++|+++++.++...-......+++|++|+++++.
T Consensus 227 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 66677777666665542211112234666666666664
No 44
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.08 E-value=5.1e-06 Score=72.31 Aligned_cols=116 Identities=18% Similarity=0.180 Sum_probs=71.5
Q ss_pred hhCCCCcEEEcCCCCCCCHH--HHHHHHh-cCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHH-HH-HHH
Q 021719 119 ERCPQLKRLVMPAWNRIKKT--GICKAIR-MWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLL-FA-STL 192 (308)
Q Consensus 119 ~~~~~L~~L~L~~~~~~~~~--~l~~~~~-~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~-~~-~~l 192 (308)
...++|+.|+|+++. ++.. .+..+.. ..++|++|+++++.+.......+. .+++|++|+++++ +... .. ..+
T Consensus 118 ~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 118 ATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp CCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred hcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHH
Confidence 346777777777653 3221 1111111 127788888877755432222222 4778888888877 4443 12 122
Q ss_pred -HhcCCCCcEEEeeCCCCCH--HHHHHHHHcCCCCCEEecccCCCcC
Q 021719 193 -NMYLPKLKVLSLRCTTLNR--DALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 193 -~~~~p~L~~L~L~~~~it~--~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
...+++|++|+++++.++. .....+...+++|++|+++++...+
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence 1578999999999888873 3344566778999999999886444
No 45
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.07 E-value=2.5e-06 Score=81.27 Aligned_cols=124 Identities=19% Similarity=0.196 Sum_probs=91.1
Q ss_pred CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021719 95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 174 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 174 (308)
...++.|.+..+....-.. ...+++|+.|+|+++. ++.. ..+..+++|+.|+|++|.+.. +..+ ..+++
T Consensus 64 l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N~l~~--l~~l-~~l~~ 132 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDENK-IKDL---SSLKDLKKLKSLSLEHNGISD--INGL-VHLPQ 132 (605)
T ss_dssp CTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSSC-CCCC---TTSTTCTTCCEEECTTSCCCC--CGGG-GGCTT
T ss_pred CCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCCC-CCCC---hhhccCCCCCEEEecCCCCCC--Cccc-cCCCc
Confidence 5678888887764332111 4578999999999884 4331 246789999999999997664 2233 36899
Q ss_pred CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021719 175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 235 (308)
Q Consensus 175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i 235 (308)
|+.|.|+++ +.+. .....+++|+.|+|+++.+++..- +..+++|+.|+|++|..-
T Consensus 133 L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 133 LESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp CSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCC
T ss_pred cCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCC
Confidence 999999987 4432 234589999999999888875332 678999999999998543
No 46
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.06 E-value=1.5e-06 Score=79.15 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=42.8
Q ss_pred CcCCCCHHHHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCcceeee
Q 021719 10 RWEDLDNDILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLD 56 (308)
Q Consensus 10 ~~~~LP~eiL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~ 56 (308)
.++.||+|++.+||+||+.+++.+ +++|||+|+.++.++.+|+.+-
T Consensus 18 ~~~~lp~e~~~~i~~~l~~~~l~~-~~~v~~~~~~~~~~~~~w~~~~ 63 (445)
T 2ovr_B 18 FISLLPKELALYVLSFLEPKDLLQ-AAQTCRYWRILAEDNLLWREKC 63 (445)
T ss_dssp TTTSSCHHHHHHHHTTSCHHHHHH-HTTSCHHHHHHHTCSHHHHHHH
T ss_pred hhHHCCHHHHHHHHHhCCHHHHHH-HHHHhHHHHhhcCchhHhhhhe
Confidence 468999999999999999999999 9999999999999989999764
No 47
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.04 E-value=5.2e-07 Score=82.05 Aligned_cols=45 Identities=29% Similarity=0.489 Sum_probs=41.9
Q ss_pred cCCCCHH----HHHHHhcCCChHHHhhHHhHhhHHHHHhccCCCcceeee
Q 021719 11 WEDLDND----ILVKIFQSFDIFELTSGIAHVCSSWRSACCDPLLWKTLD 56 (308)
Q Consensus 11 ~~~LP~e----iL~~If~~L~~~d~~~~~s~VCr~Wr~~~~~p~lw~~i~ 56 (308)
++.||+| |+.+||+||+.+++++ +++|||+|+.++.++.+|+.+-
T Consensus 11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~-~~~v~~~w~~~~~~~~~w~~~~ 59 (435)
T 1p22_A 11 ITALPARGLDHIAENILSYLDAKSLCA-AELVCKEWYRVTSDGMLWKKLI 59 (435)
T ss_dssp HHHTGGGTCHHHHHHHHTTCCHHHHHH-HHHHCHHHHHHHHHTTHHHHHH
T ss_pred HHHCCcchHHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHhcChHHHHHHH
Confidence 4689999 9999999999999999 9999999999999999999763
No 48
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.03 E-value=3.9e-07 Score=83.46 Aligned_cols=113 Identities=15% Similarity=0.062 Sum_probs=61.1
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHH-HHhcCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFAST-LNMYLP 197 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~-l~~~~p 197 (308)
.+++|+.|+++++..... --...+..+++|++|+++++.++......+. .+++|++|+++++ +++..... ....++
T Consensus 52 ~l~~L~~L~L~~n~~~~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 129 (455)
T 3v47_A 52 RLQDLQFLKVEQQTPGLV-IRNNTFRGLSSLIILKLDYNQFLQLETGAFN-GLANLEVLTLTQCNLDGAVLSGNFFKPLT 129 (455)
T ss_dssp SCTTCCEEECCCCSTTCE-ECTTTTTTCTTCCEEECTTCTTCEECTTTTT-TCTTCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred cCccccEEECcCCcccce-ECcccccccccCCEEeCCCCccCccChhhcc-CcccCCEEeCCCCCCCccccCcccccCcc
Confidence 466777777776532111 0012245567777777777655432222222 3667777777665 43322211 134567
Q ss_pred CCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCC
Q 021719 198 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 234 (308)
Q Consensus 198 ~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~ 234 (308)
+|++|+|+++.++......++..+++|++|+++++..
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 7777777766655432223345677777777776653
No 49
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.02 E-value=2.1e-07 Score=75.66 Aligned_cols=105 Identities=23% Similarity=0.182 Sum_probs=61.7
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
.+++|+.|+++++. ++. +. .+..+++|+.|+++++.+.. +......+++|+.|+++++ ++.- .. ...+++
T Consensus 46 ~l~~L~~L~ls~n~-l~~--l~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~l--~~-~~~l~~ 116 (198)
T 1ds9_A 46 TLKACKHLALSTNN-IEK--IS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASL--SG-IEKLVN 116 (198)
T ss_dssp HTTTCSEEECSEEE-ESC--CC-CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCCH--HH-HHHHHH
T ss_pred cCCCCCEEECCCCC-Ccc--cc-ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCcC--Cc-cccCCC
Confidence 46777777777652 222 12 34566777777777774431 1122223567777777765 4331 12 235677
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
|++|+++++.+++-.....+..+++|++|+++++.
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 77777777777653332345567777777777664
No 50
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.01 E-value=3e-06 Score=73.76 Aligned_cols=137 Identities=12% Similarity=0.072 Sum_probs=71.0
Q ss_pred CccEEEccCCCCCCHHHHHHHH-hhCCCCcEEEcCCCCCCCHHH--H-HHHHhcCCCCCEEEeCCCCCChHHHHHHHHcC
Q 021719 97 SIRTLIFHFNLYVSDDQLTYTA-ERCPQLKRLVMPAWNRIKKTG--I-CKAIRMWRDLESLTMPSIANPPYLMEEIAQNC 172 (308)
Q Consensus 97 ~l~~l~l~~~~~~~d~~l~~l~-~~~~~L~~L~L~~~~~~~~~~--l-~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~ 172 (308)
.++.+.+..+.... .....+. ...++|++|+|+++. ++... + ......+++|++|+++++.+.......+ ..+
T Consensus 92 ~L~~L~l~~n~l~~-~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~l 168 (310)
T 4glp_A 92 RLKELTLEDLKITG-TMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV-RAF 168 (310)
T ss_dssp CCCEEEEESCCCBS-CCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC-CCC
T ss_pred ceeEEEeeCCEecc-chhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh-ccC
Confidence 47777765543211 0000111 345677777777653 22200 0 1122367777777777775432221222 246
Q ss_pred CCCCeeEecCC-CCHHHHHHH---HhcCCCCcEEEeeCCCCC--HHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 173 RNFRELKIMGP-FDLLFASTL---NMYLPKLKVLSLRCTTLN--RDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 173 ~~L~~L~l~~~-~~~~~~~~l---~~~~p~L~~L~L~~~~it--~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
++|++|+++++ +........ ...+|+|++|+|+++.++ ......++..+++|++|+++++...+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~ 238 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA 238 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc
Confidence 67777777766 343222111 135677777777777776 22233345667777777777765433
No 51
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.00 E-value=6.1e-06 Score=75.99 Aligned_cols=36 Identities=25% Similarity=0.231 Sum_probs=17.9
Q ss_pred cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
.+++|+.|+++++.+++. .-+..+++|+.|++++|.
T Consensus 329 ~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 329 SLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp GCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSC
T ss_pred cCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCc
Confidence 455555555555444432 123345555555555554
No 52
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.99 E-value=9.9e-07 Score=75.35 Aligned_cols=132 Identities=15% Similarity=0.088 Sum_probs=67.7
Q ss_pred CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021719 95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 174 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 174 (308)
...++.+.+..+....- . ....+++|++|+++++ .++.. ....+..+++|++|+++++.++...... ...+++
T Consensus 62 l~~L~~L~l~~n~l~~~---~-~l~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~ 134 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDI---S-ALKELTNLTYLILTGN-QLQSL-PNGVFDKLTNLKELVLVENQLQSLPDGV-FDKLTN 134 (272)
T ss_dssp CTTCCEEECTTSCCCCC---G-GGTTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTT
T ss_pred CCCCcEEECCCCCCCCc---h-hhcCCCCCCEEECCCC-ccCcc-ChhHhcCCcCCCEEECCCCcCCccCHHH-hccCCC
Confidence 34566666655432221 1 1234566777777665 22210 0112345667777777766544211111 124567
Q ss_pred CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021719 175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 235 (308)
Q Consensus 175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i 235 (308)
|++|+++++ ++... ......+++|+.|+++++.++... ...+..+++|++|++++|...
T Consensus 135 L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 135 LTYLNLAHNQLQSLP-KGVFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCS
T ss_pred CCEEECCCCccCccC-HHHhccCccCCEEECCCCCcCccC-HHHhcCCccCCEEECCCCcCC
Confidence 777777665 22110 111235677777777776665211 122355777777777776533
No 53
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.98 E-value=3.1e-06 Score=71.95 Aligned_cols=100 Identities=21% Similarity=0.224 Sum_probs=44.8
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
.+++|+.|+++++ .+++.. . +..+++|+.|+++++.++. +..+.. ++|+.|+++++ +++- .. ...+++
T Consensus 61 ~l~~L~~L~L~~N-~i~~~~--~-l~~l~~L~~L~L~~N~l~~--l~~~~~--~~L~~L~L~~N~l~~~--~~-l~~l~~ 129 (263)
T 1xeu_A 61 FFTNLKELHLSHN-QISDLS--P-LKDLTKLEELSVNRNRLKN--LNGIPS--ACLSRLFLDNNELRDT--DS-LIHLKN 129 (263)
T ss_dssp GCTTCCEEECCSS-CCCCCG--G-GTTCSSCCEEECCSSCCSC--CTTCCC--SSCCEEECCSSCCSBS--GG-GTTCTT
T ss_pred hCCCCCEEECCCC-ccCCCh--h-hccCCCCCEEECCCCccCC--cCcccc--CcccEEEccCCccCCC--hh-hcCccc
Confidence 3556666666654 222211 1 4455666666666554332 011111 45555555544 2211 01 234555
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
|+.|+++++.+++.. .+..+++|+.|+++++.
T Consensus 130 L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 130 LEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp CCEEECTTSCCCBCG---GGGGCTTCCEEECTTSC
T ss_pred ccEEECCCCcCCCCh---HHccCCCCCEEECCCCc
Confidence 555555555544321 23345555555555543
No 54
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.95 E-value=5.8e-07 Score=76.80 Aligned_cols=134 Identities=17% Similarity=0.087 Sum_probs=81.2
Q ss_pred CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021719 95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 174 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 174 (308)
...++.+.+..+.... ........+++|+.|+++++. ++.. ....+..+++|+.|++++|.++.... .....+++
T Consensus 84 l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~ 158 (272)
T 3rfs_A 84 LTNLTYLILTGNQLQS--LPNGVFDKLTNLKELVLVENQ-LQSL-PDGVFDKLTNLTYLNLAHNQLQSLPK-GVFDKLTN 158 (272)
T ss_dssp CTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTT
T ss_pred CCCCCEEECCCCccCc--cChhHhcCCcCCCEEECCCCc-CCcc-CHHHhccCCCCCEEECCCCccCccCH-HHhccCcc
Confidence 4567888877653221 111112357889999988773 3211 11234577889999998886542211 11235788
Q ss_pred CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021719 175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 235 (308)
Q Consensus 175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i 235 (308)
|+.|+++++ ++... ......+++|++|+++++.++... ...+..+++|+.|+++++...
T Consensus 159 L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 159 LTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBC
T ss_pred CCEEECCCCCcCccC-HHHhcCCccCCEEECCCCcCCccC-HHHHhCCcCCCEEEccCCCcc
Confidence 999998876 33211 122346888999999887776321 133456888999999887644
No 55
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.95 E-value=7e-06 Score=75.57 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=72.1
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
.+++|+.|+++++. ++.. ..+..+++|+.|++++|.+++... ...+++|+.|++.++ +++. . -...+++
T Consensus 285 ~l~~L~~L~L~~n~-l~~~---~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~-~l~~l~~ 354 (466)
T 1o6v_A 285 GLTALTNLELNENQ-LEDI---SPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV--S-SLANLTN 354 (466)
T ss_dssp TCTTCSEEECCSSC-CSCC---GGGGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC--G-GGTTCTT
T ss_pred CCCccCeEEcCCCc-ccCc---hhhcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc--h-hhccCCC
Confidence 46677777777653 2221 115677888888888886553221 236889999999877 3332 1 2358999
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
|+.|+++++.+++... +..+++|+.|++++|.-..
T Consensus 355 L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 355 INWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEEC
T ss_pred CCEEeCCCCccCccch---hhcCCCCCEEeccCCcccC
Confidence 9999999988875432 5789999999999986544
No 56
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.93 E-value=3.8e-07 Score=77.97 Aligned_cols=109 Identities=18% Similarity=0.167 Sum_probs=48.5
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCC
Q 021719 121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL 199 (308)
Q Consensus 121 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L 199 (308)
+++|+.|+++++ .++... ...+..+++|+.|+++++.+.......+. .+++|++|.+.++ +....... ...+++|
T Consensus 51 l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L 126 (276)
T 2z62_A 51 FPELQVLDLSRC-EIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLENFP-IGHLKTL 126 (276)
T ss_dssp CTTCSEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTSCCCCSTTCC-CTTCTTC
T ss_pred ccCCcEEECCCC-cCCccC-HHHccCCcCCCEEECCCCccCccChhhhc-CCccccEEECCCCCccccCchh-cccCCCC
Confidence 456666666654 222100 11234455666666665544322111121 3455666666543 11100000 2245566
Q ss_pred cEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 200 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 200 ~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
++|+++++.++...+...+..+++|++|++++|.
T Consensus 127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence 6666655554432222333445566666665554
No 57
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.92 E-value=1.2e-06 Score=71.11 Aligned_cols=124 Identities=21% Similarity=0.122 Sum_probs=85.7
Q ss_pred CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021719 95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 174 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 174 (308)
...++.+.+..+.... +. ....+++|+.|+++++. ++ .+......+++|+.|++++|.++. +..+. .+++
T Consensus 47 l~~L~~L~ls~n~l~~---l~-~~~~l~~L~~L~l~~n~-l~--~l~~~~~~~~~L~~L~L~~N~l~~--l~~~~-~l~~ 116 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK---IS-SLSGMENLRILSLGRNL-IK--KIENLDAVADTLEELWISYNQIAS--LSGIE-KLVN 116 (198)
T ss_dssp TTTCSEEECSEEEESC---CC-CHHHHTTCCEEEEEEEE-EC--SCSSHHHHHHHCSEEEEEEEECCC--HHHHH-HHHH
T ss_pred CCCCCEEECCCCCCcc---cc-ccccCCCCCEEECCCCC-cc--cccchhhcCCcCCEEECcCCcCCc--CCccc-cCCC
Confidence 4567788776543222 12 22357899999999873 33 233445567899999999997765 33444 4789
Q ss_pred CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHH---------HHHHHHHcCCCCCEEe
Q 021719 175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRD---------ALILILDGLQNLEVLN 228 (308)
Q Consensus 175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~---------~l~~l~~~~p~L~~L~ 228 (308)
|+.|+++++ +++-........+++|++|+++++.++.. ....++..+|+|+.|+
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 999999987 55433223345899999999998877543 2234567899999998
No 58
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.92 E-value=4.1e-06 Score=78.10 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=57.6
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcC-C
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYL-P 197 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~-p 197 (308)
.+++|+.|+++++....-..+...+..+++|+.|+++++.+....-......+++|+.|+++++ ++.. +...+ +
T Consensus 346 ~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~ 421 (520)
T 2z7x_B 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT----IFRCLPP 421 (520)
T ss_dssp CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGG----GGGSCCT
T ss_pred cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcc----hhhhhcc
Confidence 3556666666655322223344445566666666666664432111111123456666666655 3321 11223 5
Q ss_pred CCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021719 198 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 235 (308)
Q Consensus 198 ~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i 235 (308)
+|+.|+++++.++ .+..-+..+++|++|++++|...
T Consensus 422 ~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 422 RIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp TCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCCEEECCCCccc--ccchhhhcCCCCCEEECCCCcCC
Confidence 7777777776666 23332336777888888777533
No 59
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.91 E-value=3.1e-06 Score=78.91 Aligned_cols=134 Identities=15% Similarity=0.122 Sum_probs=90.1
Q ss_pred CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021719 95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 174 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 174 (308)
...++.+.+..+....-..+......+++|+.|+++++. ++...-...+..+++|++|++++|.++......+ .++
T Consensus 347 l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~ 422 (520)
T 2z7x_B 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---PPR 422 (520)
T ss_dssp CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC---CTT
T ss_pred CCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccchhccCccCCEEECcCCCCCcchhhhh---ccc
Confidence 345677777665444333344445578999999999874 3321001134567999999999998875443322 279
Q ss_pred CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHH-HHHcCCCCCEEecccCCCcC
Q 021719 175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALIL-ILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~-l~~~~p~L~~L~l~~C~~i~ 236 (308)
|+.|+++++ ++ .....+. .+++|++|+++++.++. +.. .+..+++|++|+++++.-..
T Consensus 423 L~~L~Ls~N~l~-~ip~~~~-~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 423 IKVLDLHSNKIK-SIPKQVV-KLEALQELNVASNQLKS--VPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCEEECCCCccc-ccchhhh-cCCCCCEEECCCCcCCc--cCHHHhccCCcccEEECcCCCCcc
Confidence 999999987 44 1111233 89999999999888873 222 35678999999999986543
No 60
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.90 E-value=1.4e-06 Score=75.81 Aligned_cols=112 Identities=17% Similarity=0.147 Sum_probs=56.8
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHH-HHHH--HHcCCCCCeeEecCC-CC--HHHHHHHH
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYL-MEEI--AQNCRNFRELKIMGP-FD--LLFASTLN 193 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-l~~l--~~~~~~L~~L~l~~~-~~--~~~~~~l~ 193 (308)
.+++|+.|+|+++. ++.. ....+..+++|++|++++|.+.... +... ...+++|++|+++++ ++ +.....+.
T Consensus 143 ~~~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 143 LKPGLKVLSIAQAH-SPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp BCSCCCEEEEECCS-SCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred hccCCCEEEeeCCC-cchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 46677777776653 2110 1122345667777777776544321 1111 124566777777665 33 22233334
Q ss_pred hcCCCCcEEEeeCCCCCHHHHHHHHHcC---CCCCEEecccCCC
Q 021719 194 MYLPKLKVLSLRCTTLNRDALILILDGL---QNLEVLNISHCLL 234 (308)
Q Consensus 194 ~~~p~L~~L~L~~~~it~~~l~~l~~~~---p~L~~L~l~~C~~ 234 (308)
..+++|++|+|+++.+++..... +..+ ++|++|+++++..
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~L~~L~Ls~N~l 263 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPS-APRCMWSSALNSLNLSFAGL 263 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSC-CSSCCCCTTCCCEECCSSCC
T ss_pred hcCCCCCEEECCCCCCCccchhh-HHhccCcCcCCEEECCCCCC
Confidence 46677777777766655321101 1122 5677777766643
No 61
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.86 E-value=3.7e-06 Score=71.51 Aligned_cols=124 Identities=15% Similarity=0.183 Sum_probs=88.5
Q ss_pred CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021719 95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 174 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 174 (308)
...++.+.+..+....-.. ...+++|+.|+++++. ++. +.. ... ++|+.|+++++.+++- ..+ ..+++
T Consensus 62 l~~L~~L~L~~N~i~~~~~----l~~l~~L~~L~L~~N~-l~~--l~~-~~~-~~L~~L~L~~N~l~~~--~~l-~~l~~ 129 (263)
T 1xeu_A 62 FTNLKELHLSHNQISDLSP----LKDLTKLEELSVNRNR-LKN--LNG-IPS-ACLSRLFLDNNELRDT--DSL-IHLKN 129 (263)
T ss_dssp CTTCCEEECCSSCCCCCGG----GTTCSSCCEEECCSSC-CSC--CTT-CCC-SSCCEEECCSSCCSBS--GGG-TTCTT
T ss_pred CCCCCEEECCCCccCCChh----hccCCCCCEEECCCCc-cCC--cCc-ccc-CcccEEEccCCccCCC--hhh-cCccc
Confidence 4678888887664322221 4578999999999873 332 111 122 8999999999977642 233 35899
Q ss_pred CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
|+.|+++++ +++-. ....+++|+.|+++++.+++. ..+..+++|+.|+++++....
T Consensus 130 L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 130 LEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEEC
T ss_pred ccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcccC
Confidence 999999987 44321 245899999999999998865 445679999999999876444
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.84 E-value=5e-07 Score=79.51 Aligned_cols=133 Identities=21% Similarity=0.187 Sum_probs=88.8
Q ss_pred cCCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCC
Q 021719 94 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR 173 (308)
Q Consensus 94 s~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~ 173 (308)
....++.+.+..+... ..-..+. .+++|++|+|+++. ++ .+...+..+++|++|+++++.+. .....+ ..++
T Consensus 79 ~~~~l~~L~L~~n~l~--~lp~~l~-~l~~L~~L~L~~n~-l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~ 150 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP--QFPDQAF-RLSHLQHMTIDAAG-LM--ELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLN 150 (328)
T ss_dssp TSTTCCEEEEESSCCS--SCCSCGG-GGTTCSEEEEESSC-CC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCT
T ss_pred cccceeEEEccCCCch--hcChhhh-hCCCCCEEECCCCC-cc--chhHHHhccCCCCEEECCCCccc-cCcHHH-hcCc
Confidence 4567888888764322 1111122 47899999999873 33 23344678999999999999665 222223 3589
Q ss_pred CCCeeEecCC-CCHHHHHHH--------HhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 174 NFRELKIMGP-FDLLFASTL--------NMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 174 ~L~~L~l~~~-~~~~~~~~l--------~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
+|++|+++++ ........+ ...+++|++|+++++.++ .+..-+..+++|++|++++|....
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCc
Confidence 9999999874 211100111 124999999999988877 333446789999999999987543
No 63
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.83 E-value=1.8e-06 Score=77.50 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=55.7
Q ss_pred CCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcE
Q 021719 123 QLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKV 201 (308)
Q Consensus 123 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~ 201 (308)
+|+.|+++++. +++. ..+..+++|++|+++++.+.......+. .+++|+.|+++++ ++.- ......+|+|++
T Consensus 227 ~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~ 299 (390)
T 3o6n_A 227 ELTILKLQHNN-LTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNRLVAL--NLYGQPIPTLKV 299 (390)
T ss_dssp SCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECCSSCCCEE--ECSSSCCTTCCE
T ss_pred cccEEECCCCC-Cccc---HHHcCCCCccEEECCCCcCCCcChhHcc-ccccCCEEECCCCcCccc--CcccCCCCCCCE
Confidence 45555555542 2221 2345667777777777755432222222 3567777777665 2210 001135677777
Q ss_pred EEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 202 LSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 202 L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
|+++++.++. +..-+..+++|++|++++|...+
T Consensus 300 L~L~~n~l~~--~~~~~~~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 300 LDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVT 332 (390)
T ss_dssp EECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCC
T ss_pred EECCCCccee--cCccccccCcCCEEECCCCccce
Confidence 7777666652 22223456777777777766433
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.81 E-value=8e-08 Score=83.50 Aligned_cols=113 Identities=22% Similarity=0.246 Sum_probs=59.6
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCC
Q 021719 121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL 199 (308)
Q Consensus 121 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L 199 (308)
+++|+.|+++++. ++.......+..+++|+.|+++++.+.......+ ..+++|++|+++++ +.+.........+++|
T Consensus 100 l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 100 LEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF-NGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp CTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhc-ccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 4555555555542 1111111234456667777776664432211112 23567777777665 3221111223467788
Q ss_pred cEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 200 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 200 ~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
++|+++++.++.... ..+..+++|++|+++++...+
T Consensus 178 ~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 178 TFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp CEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCSB
T ss_pred CEEECCCCCcCCcCH-HHhcCCCCCCEEECCCCccCc
Confidence 888888777654221 223567888888888876443
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.80 E-value=3.4e-07 Score=79.47 Aligned_cols=110 Identities=19% Similarity=0.141 Sum_probs=46.9
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
.+++|+.|+++++. ++.. ....+..+++|++|+++++.+....+......+++|+.|+++++ ++.... .....+++
T Consensus 124 ~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~ 200 (306)
T 2z66_A 124 SLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSS 200 (306)
T ss_dssp TCTTCCEEECTTSC-CEEC-STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTT
T ss_pred hccCCCEEECCCCc-CCcc-chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCCC
Confidence 34566666666542 1110 11123445566666665554332111111223455666665554 221100 11124555
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
|++|+++++.++..... .+..+++|++|+++++.
T Consensus 201 L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 201 LQVLNMSHNNFFSLDTF-PYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp CCEEECTTSCCSBCCSG-GGTTCTTCCEEECTTSC
T ss_pred CCEEECCCCccCccChh-hccCcccCCEeECCCCC
Confidence 55555555544321111 12345555555555554
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.78 E-value=3.4e-06 Score=72.31 Aligned_cols=38 Identities=24% Similarity=0.188 Sum_probs=18.7
Q ss_pred cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
.+++|+.|+++++.++.... ..+..+++|+.|+++++.
T Consensus 199 ~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 199 DLGRLMTLYLFANNLSALPT-EALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TCTTCCEEECCSSCCSCCCH-HHHTTCTTCCEEECCSSC
T ss_pred CcccccEeeCCCCcCCcCCH-HHcccCcccCEEeccCCC
Confidence 45555555555555443211 223445556666555554
No 67
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.77 E-value=1.2e-06 Score=71.62 Aligned_cols=132 Identities=14% Similarity=0.060 Sum_probs=83.0
Q ss_pred CccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCC
Q 021719 97 SIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFR 176 (308)
Q Consensus 97 ~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 176 (308)
.++.+.+..+... .........+++|++|+++++ .++.. ....+..+++|++|+++++.++.... .....+++|+
T Consensus 29 ~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~ 103 (208)
T 2o6s_A 29 QTTYLDLETNSLK--SLPNGVFDELTSLTQLYLGGN-KLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPN-GVFDKLTQLK 103 (208)
T ss_dssp TCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCC
T ss_pred CCcEEEcCCCccC--cCChhhhcccccCcEEECCCC-ccCcc-ChhhcCCCCCcCEEECCCCcCCccCH-hHhcCccCCC
Confidence 4666766554321 111112245789999999986 33321 11234678999999999986652211 1123578999
Q ss_pred eeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021719 177 ELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 235 (308)
Q Consensus 177 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i 235 (308)
.|+++++ ++... ......+++|++|+++++.++... ...+..+++|++|+++++...
T Consensus 104 ~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 104 ELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp EEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBC
T ss_pred EEEcCCCcCcccC-HhHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecCCCee
Confidence 9999876 33111 112347899999999988776321 123466899999999988544
No 68
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.76 E-value=1.5e-06 Score=76.23 Aligned_cols=62 Identities=10% Similarity=-0.034 Sum_probs=29.0
Q ss_pred CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCC
Q 021719 96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIA 159 (308)
Q Consensus 96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 159 (308)
..++.+.+..+... . ........+++|+.|+++++...........+..+++|+.|+++++.
T Consensus 121 ~~L~~L~l~~n~l~-~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 121 KTLQELRVHENEIT-K-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp TTCCEEECCSSCCC-B-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred ccccEEECCCCccc-c-cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 35666666544221 1 11112234667777777765321111112234456666666666553
No 69
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.76 E-value=1.4e-06 Score=82.93 Aligned_cols=111 Identities=18% Similarity=0.158 Sum_probs=72.6
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
.+++|+.|+|+++ .++.- -...+..+++|++|+|++|.+..-....+ ..+++|++|+++++ ++.-.. .....+++
T Consensus 74 ~l~~L~~L~Ls~N-~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f-~~L~~L~~L~Ls~N~l~~l~~-~~~~~L~~ 149 (635)
T 4g8a_A 74 SFPELQVLDLSRC-EIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETNLASLEN-FPIGHLKT 149 (635)
T ss_dssp TCTTCCEEECTTC-CCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGG-TTCTTCCEEECTTSCCCCSTT-CCCTTCTT
T ss_pred CCCCCCEEECCCC-cCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHh-cCCCCCCEEECCCCcCCCCCh-hhhhcCcc
Confidence 5788999999887 33210 01235678899999999886543221222 35788999999876 321110 11247889
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCC
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 234 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~ 234 (308)
|++|+|+++.++...+...+..+++|++|+++++..
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred cCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 999999888776443444556788999999988753
No 70
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.75 E-value=2e-06 Score=69.59 Aligned_cols=108 Identities=14% Similarity=0.114 Sum_probs=71.8
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCc
Q 021719 122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK 200 (308)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~ 200 (308)
++|+.|++++. .++. +...+..+++|+.|+++++.++......+ ..+++|++|+++++ ++.-.. .....+++|+
T Consensus 31 ~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~ 105 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSF-SNMTQLLTLILSYNRLRCIPP-RTFDGLKSLR 105 (193)
T ss_dssp TTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCBCCT-TTTTTCTTCC
T ss_pred CCCCEEECCCC-cCch--hHHHhhcccCCCEEECCCCcCCEeCHhHc-cCCCCCCEEECCCCccCEeCH-HHhCCCCCCC
Confidence 57889998876 3331 22456788999999999986653222222 25789999999876 321111 1134789999
Q ss_pred EEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021719 201 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 235 (308)
Q Consensus 201 ~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i 235 (308)
+|+|+++.++.-. ...+..+++|+.|++++..-.
T Consensus 106 ~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 106 LLSLHGNDISVVP-EGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp EEECCSSCCCBCC-TTTTTTCTTCCEEECCSSCEE
T ss_pred EEECCCCCCCeeC-hhhhhcCccccEEEeCCCCee
Confidence 9999988876321 123456899999999876543
No 71
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.73 E-value=1.6e-07 Score=88.47 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=20.2
Q ss_pred cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
.+++|+.|+++++.++.... ..+..+++|++|++++|.
T Consensus 468 ~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 468 ELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp TCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSC
T ss_pred cccCCCEEECCCCccccCCh-hhhhcccCCCEEeCCCCc
Confidence 45666666666555543211 123346666666666664
No 72
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.73 E-value=2.9e-06 Score=70.58 Aligned_cols=132 Identities=14% Similarity=0.004 Sum_probs=81.4
Q ss_pred CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCC
Q 021719 96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF 175 (308)
Q Consensus 96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L 175 (308)
..++.+.+..+....- .......+++|+.|+|+++. ++.- -...+..+++|+.|+++++.++.-.- .....+++|
T Consensus 40 ~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L~~N~-l~~i-~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L 114 (229)
T 3e6j_A 40 TNAQILYLHDNQITKL--EPGVFDSLINLKELYLGSNQ-LGAL-PVGVFDSLTQLTVLDLGTNQLTVLPS-AVFDRLVHL 114 (229)
T ss_dssp TTCSEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred CCCCEEEcCCCccCcc--CHHHhhCccCCcEEECCCCC-CCCc-ChhhcccCCCcCEEECCCCcCCccCh-hHhCcchhh
Confidence 5677888776543210 01112357889999998863 3211 01234678899999999886542211 112357889
Q ss_pred CeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021719 176 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 235 (308)
Q Consensus 176 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i 235 (308)
+.|+++++ +.. +..-...+++|++|+|+++.++.-.- ..+..+++|+.|++++....
T Consensus 115 ~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 115 KELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CEEECCSSCCCS--CCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCBC
T ss_pred CeEeccCCcccc--cCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCcc
Confidence 99999876 331 11112578999999999887763211 33466889999999876533
No 73
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.71 E-value=2.5e-06 Score=75.63 Aligned_cols=135 Identities=20% Similarity=0.192 Sum_probs=85.6
Q ss_pred CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCC
Q 021719 96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF 175 (308)
Q Consensus 96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L 175 (308)
..++.+.+..+.. +. ........+++|+.|+++++ .++.. ....+..+++|++|+++++.++.-....+ ..+++|
T Consensus 52 ~~L~~L~l~~n~i-~~-~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L 126 (353)
T 2z80_A 52 EAVKSLDLSNNRI-TY-ISNSDLQRCVNLQALVLTSN-GINTI-EEDSFSSLGSLEHLDLSYNYLSNLSSSWF-KPLSSL 126 (353)
T ss_dssp TTCCEEECTTSCC-CE-ECTTTTTTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECCSSCCSSCCHHHH-TTCTTC
T ss_pred ccCcEEECCCCcC-cc-cCHHHhccCCCCCEEECCCC-ccCcc-CHhhcCCCCCCCEEECCCCcCCcCCHhHh-CCCccC
Confidence 4688888876532 11 00111246799999999987 34321 11235678999999999997653222223 358999
Q ss_pred CeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCC-CCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 176 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCT-TLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 176 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~-~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
++|+++++ +..-........+++|++|+++++ .++... ...+..+++|++|++++|....
T Consensus 127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCE
T ss_pred CEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCCCCcCc
Confidence 99999876 332110012347899999999966 344221 1234568999999999986443
No 74
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.71 E-value=1.6e-06 Score=81.61 Aligned_cols=110 Identities=18% Similarity=0.159 Sum_probs=50.4
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
.+++|++|+++++ .++.. ....+..+++|++|+++++.+.......+. .+++|++|++.++ +..-.... ...+++
T Consensus 50 ~l~~L~~L~Ls~n-~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~-~~~l~~ 125 (570)
T 2z63_A 50 SFPELQVLDLSRC-EIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLENFP-IGHLKT 125 (570)
T ss_dssp TCSSCCEEECTTC-CCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTSCCCCSTTCS-CTTCTT
T ss_pred CCCCceEEECCCC-cCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhc-CccccccccccccccccCCCcc-cccccc
Confidence 3566666666655 22210 012234556666666666644322111222 3556666666554 21100001 235566
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
|++|+++++.++...+...+..+++|++|+++++.
T Consensus 126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred ccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 66666665554432222223455666666666554
No 75
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.70 E-value=1.4e-06 Score=82.76 Aligned_cols=110 Identities=16% Similarity=0.118 Sum_probs=57.5
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
.+++|++|+++++ .++.. ....+..+++|++|+++++.+.......+. .+++|++|+++++ +....... ...+++
T Consensus 54 ~l~~L~~L~Ls~n-~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~-~~~l~~ 129 (606)
T 3vq2_A 54 NFSELQWLDLSRC-EIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFS-GLTSLENLVAVETKLASLESFP-IGQLIT 129 (606)
T ss_dssp TCTTCCEEECTTC-CCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSST-TCTTCCEEECTTSCCCCSSSSC-CTTCTT
T ss_pred CCccCcEEeCCCC-ccccc-CHHHhhchhhcCEeECCCCcccccChhhcC-CcccCCEEEccCCccccccccc-cCCCCC
Confidence 4567777777765 22211 012235666777777776654322122222 4667777777655 22110001 235667
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
|++|+++++.++...+...+..+++|++|+++++.
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred CCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 77777776665532233344556777777776664
No 76
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.69 E-value=2.4e-06 Score=80.17 Aligned_cols=135 Identities=19% Similarity=0.211 Sum_probs=87.2
Q ss_pred CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCC
Q 021719 96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF 175 (308)
Q Consensus 96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L 175 (308)
..++.+.+..+.. +.-.. .....+++|++|+++++. ++.. ....+..+++|++|+++++.+.......++ .+++|
T Consensus 26 ~~L~~L~Ls~n~l-~~~~~-~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFNKI-TYIGH-GDLRACANLQVLILKSSR-INTI-EGDAFYSLGSLEHLDLSDNHLSSLSSSWFG-PLSSL 100 (549)
T ss_dssp TTCCEEECCSSCC-CEECS-STTSSCTTCCEEECTTSC-CCEE-CTTTTTTCTTCCEEECTTSCCCSCCHHHHT-TCTTC
T ss_pred CCccEEECcCCcc-CccCh-hhhhcCCcccEEECCCCC-cCcc-ChhhccccccCCEEECCCCccCccCHHHhc-cCCCC
Confidence 5688888876542 11100 112467899999999873 3321 113356889999999999976644444444 58999
Q ss_pred CeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCC-CCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 176 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTT-LNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 176 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
++|+++++ +...........+++|++|+++++. ++.. ....+..+++|++|+++++...+
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI-RRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE-CTTTTTTCCEEEEEEEEETTCCE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCcccccc-CHhhhhcccccCeeeccCCcccc
Confidence 99999886 3321111123578999999999765 3321 11234668999999999887443
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.69 E-value=2.5e-06 Score=71.83 Aligned_cols=109 Identities=15% Similarity=0.105 Sum_probs=53.3
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
.+++|+.|+|+++. ++.. ....+..+++|++|+++++.++.-... ....+++|+.|+++++ ++.-.. .....+++
T Consensus 81 ~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~ 156 (251)
T 3m19_A 81 DLTELGTLGLANNQ-LASL-PLGVFDHLTQLDKLYLGGNQLKSLPSG-VFDRLTKLKELRLNTNQLQSIPA-GAFDKLTN 156 (251)
T ss_dssp TCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTT
T ss_pred cCCcCCEEECCCCc-cccc-ChhHhcccCCCCEEEcCCCcCCCcChh-HhccCCcccEEECcCCcCCccCH-HHcCcCcC
Confidence 35666666666542 2210 012234566666666666644311111 1123566677766654 221100 11235667
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
|++|+|+++.++... ...+..+++|+.|+++++.
T Consensus 157 L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 157 LQTLSLSTNQLQSVP-HGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCC
T ss_pred CCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCCc
Confidence 777777766654211 1123456677777776654
No 78
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.69 E-value=2.4e-06 Score=73.34 Aligned_cols=109 Identities=15% Similarity=0.043 Sum_probs=56.2
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
.+++|++|+++++. ++.. ....+..+++|++|+++++.+.......+ ..+++|+.|+++++ ++.... .....+++
T Consensus 103 ~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~ 178 (285)
T 1ozn_A 103 GLGRLHTLHLDRCG-LQEL-GPGLFRGLAALQYLYLQDNALQALPDDTF-RDLGNLTHLFLHGNRISSVPE-RAFRGLHS 178 (285)
T ss_dssp TCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCEECT-TTTTTCTT
T ss_pred CCcCCCEEECCCCc-CCEE-CHhHhhCCcCCCEEECCCCcccccCHhHh-ccCCCccEEECCCCcccccCH-HHhcCccc
Confidence 35666666666552 2110 01224456667777776664432111111 23567777777665 221110 11235677
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
|++|+++++.++.... ..+..+++|+.|+++++.
T Consensus 179 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 179 LDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp CCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSC
T ss_pred cCEEECCCCcccccCH-hHccCcccccEeeCCCCc
Confidence 7777777666653321 223456777777777764
No 79
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.68 E-value=6e-06 Score=73.12 Aligned_cols=19 Identities=26% Similarity=0.315 Sum_probs=12.8
Q ss_pred HHHcCCCCCEEecccCCCc
Q 021719 217 ILDGLQNLEVLNISHCLLI 235 (308)
Q Consensus 217 l~~~~p~L~~L~l~~C~~i 235 (308)
.+..+++|++|+++++...
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp HHHTCTTCCEEECCSSCCC
T ss_pred HHhcccCCCEEECCCCCCC
Confidence 3456777888888777533
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.67 E-value=2.4e-06 Score=71.92 Aligned_cols=133 Identities=18% Similarity=0.119 Sum_probs=84.8
Q ss_pred CccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCC
Q 021719 97 SIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFR 176 (308)
Q Consensus 97 ~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 176 (308)
.++.+.+..+....-. ......+++|+.|+|+++ .++.. ....+..+++|+.|+++++.++...... ...+++|+
T Consensus 36 ~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~ 110 (251)
T 3m19_A 36 DTEKLDLQSTGLATLS--DATFRGLTKLTWLNLDYN-QLQTL-SAGVFDDLTELGTLGLANNQLASLPLGV-FDHLTQLD 110 (251)
T ss_dssp TCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCC
T ss_pred CCCEEEccCCCcCccC--HhHhcCcccCCEEECCCC-cCCcc-CHhHhccCCcCCEEECCCCcccccChhH-hcccCCCC
Confidence 4566666554321100 011235799999999987 33321 1223567899999999999665322222 23579999
Q ss_pred eeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 177 ELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 177 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
+|+++++ ++.-. ......+++|+.|+|+++.++...- ..+..+++|++|+++++...+
T Consensus 111 ~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 111 KLYLGGNQLKSLP-SGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp EEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSC
T ss_pred EEEcCCCcCCCcC-hhHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCc
Confidence 9999886 33111 1123478999999999888763221 234578999999999986443
No 81
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.66 E-value=7.7e-06 Score=77.30 Aligned_cols=106 Identities=18% Similarity=0.181 Sum_probs=76.8
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCc
Q 021719 122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK 200 (308)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~ 200 (308)
..|+.|+|+++ .++. +.. +..+++|+.|++++|.++ .....+ ..+++|+.|+++++ ++. +. -...+++|+
T Consensus 441 ~~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~ 511 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPAL-AALRCLEVLQASDNALEN--VD-GVANLPRLQ 511 (567)
T ss_dssp TTCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGG-GGCTTCCEEECCSSCCCC--CG-GGTTCSSCC
T ss_pred cCceEEEecCC-CCCC--CcC-ccccccCcEeecCccccc-ccchhh-hcCCCCCEEECCCCCCCC--Cc-ccCCCCCCc
Confidence 46999999987 4433 233 678899999999999765 111233 35899999999987 443 12 235899999
Q ss_pred EEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 201 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 201 ~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
.|+|++|.++.......+..+++|+.|+++++...+
T Consensus 512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 999999888754213345679999999999986544
No 82
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.66 E-value=2.6e-06 Score=70.39 Aligned_cols=113 Identities=15% Similarity=0.123 Sum_probs=76.5
Q ss_pred hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCC
Q 021719 119 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLP 197 (308)
Q Consensus 119 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p 197 (308)
..+++|+.|+|++.. ++... ...+..+++|++|+++++.++......+ ..+++|++|+++++ +...... ....++
T Consensus 54 ~~l~~L~~L~L~~N~-i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~ 129 (220)
T 2v70_A 54 KKLPQLRKINFSNNK-ITDIE-EGAFEGASGVNEILLTSNRLENVQHKMF-KGLESLKTLMLRSNRITCVGND-SFIGLS 129 (220)
T ss_dssp GGCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGGG-TTCSSCCEEECTTSCCCCBCTT-SSTTCT
T ss_pred ccCCCCCEEECCCCc-CCEEC-HHHhCCCCCCCEEECCCCccCccCHhHh-cCCcCCCEEECCCCcCCeECHh-HcCCCc
Confidence 467899999999873 33210 1245678999999999996653222222 35899999999886 3321111 124789
Q ss_pred CCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 198 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 198 ~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
+|++|+|+++.++... ...+..+++|+.|+++++.-.-
T Consensus 130 ~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 130 SVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSCCEEC
T ss_pred cCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCcCCcC
Confidence 9999999988876421 1234568999999999876443
No 83
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.65 E-value=9.6e-05 Score=69.14 Aligned_cols=65 Identities=12% Similarity=0.144 Sum_probs=26.8
Q ss_pred cCCCCCEEEeCCCCCChHHHHHH--HHcCCCCCeeEecCC-CCHHH-HHHHHhcCCCCcEEEeeCCCCC
Q 021719 146 MWRDLESLTMPSIANPPYLMEEI--AQNCRNFRELKIMGP-FDLLF-ASTLNMYLPKLKVLSLRCTTLN 210 (308)
Q Consensus 146 ~~~~L~~L~l~~~~~~~~~l~~l--~~~~~~L~~L~l~~~-~~~~~-~~~l~~~~p~L~~L~L~~~~it 210 (308)
.+++|+.|+++++.+.+...... ...+++|+.|+++++ ++.-. .......+++|++|+++++.++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence 44555555555554443332211 123445555555444 22111 1122234555555555544443
No 84
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.64 E-value=2.4e-06 Score=67.92 Aligned_cols=109 Identities=15% Similarity=0.086 Sum_probs=70.9
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCc
Q 021719 122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK 200 (308)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~ 200 (308)
++|+.|++++.. ++.. ....+..+++|++|+++++.++..... ....+++|+.|+++++ ++... ......+++|+
T Consensus 28 ~~l~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~ 103 (177)
T 2o6r_A 28 SSATRLELESNK-LQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDG-VFDKLTKLTILYLHENKLQSLP-NGVFDKLTQLK 103 (177)
T ss_dssp TTCSEEECCSSC-CCCC-CTTTTTTCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred CCCcEEEeCCCc-ccEe-CHHHhcCcccccEEECCCCcceEeChh-HccCCCccCEEECCCCCccccC-HHHhhCCcccC
Confidence 578888888763 3211 112346788999999998865522111 1235789999999876 33111 11234789999
Q ss_pred EEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021719 201 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 235 (308)
Q Consensus 201 ~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i 235 (308)
+|+++++.++... ..++..+++|++|+++++.-.
T Consensus 104 ~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 104 ELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp EEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBC
T ss_pred EEECcCCcceEeC-HHHhcCCcccCEEEecCCCee
Confidence 9999988876221 133466899999999987643
No 85
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.64 E-value=2.8e-06 Score=74.18 Aligned_cols=107 Identities=14% Similarity=0.051 Sum_probs=50.7
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCC
Q 021719 121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL 199 (308)
Q Consensus 121 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L 199 (308)
+++|+.|+++++ .++......+...+++|++|+++++.++.. .... .+++|+.|+++++ ++.-. .. ...+++|
T Consensus 143 l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~-~l~~L~~L~Ls~N~l~~l~-~~-~~~l~~L 216 (317)
T 3o53_A 143 RSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQV-VFAKLKTLDLSSNKLAFMG-PE-FQSAAGV 216 (317)
T ss_dssp GSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCC-CCTTCCEEECCSSCCCEEC-GG-GGGGTTC
T ss_pred cCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCccc--cccc-ccccCCEEECCCCcCCcch-hh-hcccCcc
Confidence 455666666554 222211122233455666666666544321 0001 2456666666554 22100 01 2356666
Q ss_pred cEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021719 200 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 235 (308)
Q Consensus 200 ~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i 235 (308)
++|+++++.++. +...+..+++|+.|+++++...
T Consensus 217 ~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 217 TWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp SEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCB
T ss_pred cEEECcCCcccc--hhhHhhcCCCCCEEEccCCCcc
Confidence 666666666552 2222344566666666665533
No 86
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.63 E-value=3.4e-06 Score=68.79 Aligned_cols=110 Identities=16% Similarity=0.091 Sum_probs=74.6
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCC
Q 021719 121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL 199 (308)
Q Consensus 121 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L 199 (308)
.++|+.|+++++. ++.. ....+..+++|++|+++++.+..... .....+++|++|+++++ ++.- .......+++|
T Consensus 27 ~~~l~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L 102 (208)
T 2o6s_A 27 PAQTTYLDLETNS-LKSL-PNGVFDELTSLTQLYLGGNKLQSLPN-GVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQL 102 (208)
T ss_dssp CTTCSEEECCSSC-CCCC-CTTTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred CCCCcEEEcCCCc-cCcC-ChhhhcccccCcEEECCCCccCccCh-hhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCC
Confidence 4689999999873 3321 12235688999999999996652211 12235899999999876 3311 11223578999
Q ss_pred cEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021719 200 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 235 (308)
Q Consensus 200 ~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i 235 (308)
++|+++++.++... ...+..+++|++|+++++...
T Consensus 103 ~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 103 KELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCS
T ss_pred CEEEcCCCcCcccC-HhHhccCCcCCEEECCCCccc
Confidence 99999988876321 123467899999999998543
No 87
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.63 E-value=3.9e-07 Score=86.67 Aligned_cols=87 Identities=22% Similarity=0.194 Sum_probs=42.4
Q ss_pred cCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCC
Q 021719 146 MWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNL 224 (308)
Q Consensus 146 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L 224 (308)
.+++|+.|++++|.+.......+ ..+++|++|+++++ +.+.........+++|+.|+++++.++... ...+..+++|
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L 499 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIF-LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS-WGVFDTLHRL 499 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTC
T ss_pred ccccCCEEECcCCCCCccchhhh-cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccC-hhhhcccccC
Confidence 44555555555543322111111 23555666666554 222111112235677777777766665321 1223456777
Q ss_pred CEEecccCCC
Q 021719 225 EVLNISHCLL 234 (308)
Q Consensus 225 ~~L~l~~C~~ 234 (308)
++|++++|..
T Consensus 500 ~~L~Ls~N~l 509 (606)
T 3vq2_A 500 QLLNMSHNNL 509 (606)
T ss_dssp CEEECCSSCC
T ss_pred CEEECCCCcC
Confidence 7777777743
No 88
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.63 E-value=9.5e-07 Score=77.20 Aligned_cols=132 Identities=14% Similarity=0.098 Sum_probs=91.8
Q ss_pred CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCC
Q 021719 96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF 175 (308)
Q Consensus 96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L 175 (308)
..++.+.+..+. ++......+...+++|+.|+++++. ++.. .....+++|++|+++++.++.-.. . ...+++|
T Consensus 144 ~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~---~~~~~l~~L~~L~Ls~N~l~~l~~-~-~~~l~~L 216 (317)
T 3o53_A 144 SRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDV---KGQVVFAKLKTLDLSSNKLAFMGP-E-FQSAAGV 216 (317)
T ss_dssp SSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-CCEE---ECCCCCTTCCEEECCSSCCCEECG-G-GGGGTTC
T ss_pred CCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCc-Cccc---ccccccccCCEEECCCCcCCcchh-h-hcccCcc
Confidence 467777776543 2222223344567999999999874 3321 112258999999999997653211 1 2357999
Q ss_pred CeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 176 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 176 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
+.|+++++ ++. +......+++|+.|+++++.++...+...+..+++|+.|++.++..++
T Consensus 217 ~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 217 TWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp SEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cEEECcCCcccc--hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 99999987 431 111235789999999999999977888888899999999998766554
No 89
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.62 E-value=6.8e-06 Score=68.25 Aligned_cols=108 Identities=19% Similarity=0.136 Sum_probs=73.8
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCc
Q 021719 122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK 200 (308)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~ 200 (308)
++|+.|+|+++. ++.. ....+..+++|++|+++++.+..-.. .....+++|+.|+++++ ++.-. ......+++|+
T Consensus 40 ~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~L~~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~ 115 (229)
T 3e6j_A 40 TNAQILYLHDNQ-ITKL-EPGVFDSLINLKELYLGSNQLGALPV-GVFDSLTQLTVLDLGTNQLTVLP-SAVFDRLVHLK 115 (229)
T ss_dssp TTCSEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred CCCCEEEcCCCc-cCcc-CHHHhhCccCCcEEECCCCCCCCcCh-hhcccCCCcCEEECCCCcCCccC-hhHhCcchhhC
Confidence 789999999873 3221 12335678999999999996542211 11235789999999886 33111 12234789999
Q ss_pred EEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021719 201 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 235 (308)
Q Consensus 201 ~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i 235 (308)
.|+|+++.++ .+..-+..+++|+.|+++++..-
T Consensus 116 ~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 116 ELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp EEECCSSCCC--SCCTTGGGCTTCSEEECCSSCCC
T ss_pred eEeccCCccc--ccCcccccCCCCCEEECCCCcCC
Confidence 9999988887 33333467899999999988543
No 90
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.61 E-value=3.3e-06 Score=69.79 Aligned_cols=111 Identities=17% Similarity=0.155 Sum_probs=72.9
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
.+++|+.|+|+++. ++.. ....+..+++|+.|+++++.++.-. ..+...+++|+.|+++++ +..... .....+++
T Consensus 54 ~l~~L~~L~Ls~N~-i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~ 129 (220)
T 2v9t_B 54 PYKKLRRIDLSNNQ-ISEL-APDAFQGLRSLNSLVLYGNKITELP-KSLFEGLFSLQLLLLNANKINCLRV-DAFQDLHN 129 (220)
T ss_dssp TCTTCCEEECCSSC-CCEE-CTTTTTTCSSCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTT
T ss_pred CCCCCCEEECCCCc-CCCc-CHHHhhCCcCCCEEECCCCcCCccC-HhHccCCCCCCEEECCCCCCCEeCH-HHcCCCCC
Confidence 46889999999873 3221 1233567899999999998655211 112235789999999876 322111 12347899
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 235 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i 235 (308)
|++|+|+++.++...- ..+..+++|+.|++++..-.
T Consensus 130 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 130 LNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCCcC
Confidence 9999999887764321 23456889999999886543
No 91
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.61 E-value=3.7e-07 Score=79.73 Aligned_cols=110 Identities=14% Similarity=0.093 Sum_probs=48.6
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
..++|+.|+++++..++.. +...+..+++|++|+++++.++......+. .+++|++|+++++ +..... .....+++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~ 150 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLP-PSISSLPN 150 (313)
T ss_dssp GCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGG-GCTTCCEEECCSSEEESCCC-GGGGGCTT
T ss_pred CCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHh-CCCCCCEEeCCCCccCCcCC-hHHhcCCC
Confidence 4566666666631122110 112234566666666666544322222222 3566666666554 211000 11234566
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCC-CCCEEecccCC
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQ-NLEVLNISHCL 233 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p-~L~~L~l~~C~ 233 (308)
|++|+++++.++.... .-+..++ +|++|+++++.
T Consensus 151 L~~L~L~~N~l~~~~p-~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 151 LVGITFDGNRISGAIP-DSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp CCEEECCSSCCEEECC-GGGGCCCTTCCEEECCSSE
T ss_pred CCeEECcCCcccCcCC-HHHhhhhhcCcEEECcCCe
Confidence 6666666555432111 1122333 55566555543
No 92
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.61 E-value=4e-06 Score=71.43 Aligned_cols=133 Identities=16% Similarity=0.071 Sum_probs=73.9
Q ss_pred CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021719 95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 174 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 174 (308)
...++.+.+..+... .....+...+++|++|+++++. ++... ...+..+++|++|+++++.++......+ ..+++
T Consensus 60 l~~L~~L~l~~n~l~--~i~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~ 134 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQ--TLPAGIFKELKNLETLWVTDNK-LQALP-IGVFDQLVNLAELRLDRNQLKSLPPRVF-DSLTK 134 (270)
T ss_dssp CTTCCEEECCSSCCS--CCCTTTTSSCTTCCEEECCSSC-CCCCC-TTTTTTCSSCCEEECCSSCCCCCCTTTT-TTCTT
T ss_pred CCCCCEEECCCCccC--eeChhhhcCCCCCCEEECCCCc-CCcCC-HhHcccccCCCEEECCCCccCeeCHHHh-CcCcC
Confidence 345666766554211 0001112346778888887653 22110 1234567788888888775442221112 24678
Q ss_pred CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCC
Q 021719 175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 234 (308)
Q Consensus 175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~ 234 (308)
|++|+++++ ++... ......+++|++|+|+++.++.... ..+..+++|++|+++++..
T Consensus 135 L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 135 LTYLSLGYNELQSLP-KGVFDKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp CCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccC-HhHccCCcccceeEecCCcCcEeCh-hHhccCCCcCEEECCCCcC
Confidence 888888776 32111 1123467888888888776653221 1235678888888888753
No 93
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.59 E-value=2.2e-05 Score=75.22 Aligned_cols=111 Identities=12% Similarity=0.130 Sum_probs=60.9
Q ss_pred hCCCCcEEEcCCCCCCCHH----------------HHHHHHh--cCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEec
Q 021719 120 RCPQLKRLVMPAWNRIKKT----------------GICKAIR--MWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIM 181 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~----------------~l~~~~~--~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~ 181 (308)
.+++|++|+|+++. ++.. .+...+. .+++|++|++++|.+.......+. .+++|++|+++
T Consensus 204 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls 281 (636)
T 4eco_A 204 RLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVA 281 (636)
T ss_dssp GCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECT
T ss_pred cccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECc
Confidence 46677777777663 3331 0223333 667777777777644332222222 36677777776
Q ss_pred CC--CCH-HHHHHHH-----hcCCCCcEEEeeCCCCCHHHHHH--HHHcCCCCCEEecccCCC
Q 021719 182 GP--FDL-LFASTLN-----MYLPKLKVLSLRCTTLNRDALIL--ILDGLQNLEVLNISHCLL 234 (308)
Q Consensus 182 ~~--~~~-~~~~~l~-----~~~p~L~~L~L~~~~it~~~l~~--l~~~~p~L~~L~l~~C~~ 234 (308)
++ ++. .....+. ..+++|++|+++++.++ .+.. .+..+++|++|++++|..
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCC
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcC
Confidence 65 444 2222222 12467777777766665 3333 455667777777776653
No 94
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.59 E-value=7.2e-05 Score=63.51 Aligned_cols=83 Identities=22% Similarity=0.118 Sum_probs=56.7
Q ss_pred hcCCCCCEEEeCCCCCCh-HHHHHHHHcCCCCCeeEecCC-CCHH-HHHHHHhcCCCCcEEEeeCCCCCH------HHHH
Q 021719 145 RMWRDLESLTMPSIANPP-YLMEEIAQNCRNFRELKIMGP-FDLL-FASTLNMYLPKLKVLSLRCTTLNR------DALI 215 (308)
Q Consensus 145 ~~~~~L~~L~l~~~~~~~-~~l~~l~~~~~~L~~L~l~~~-~~~~-~~~~l~~~~p~L~~L~L~~~~it~------~~l~ 215 (308)
..+|+|++|+|+++.++. ..+..+...+|+|+.|+|+++ +.+. .+.. ...+ +|+.|+|.+|.++. .-..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~-l~~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG-GTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh-cccC-CcceEEccCCcCccccCcchhHHH
Confidence 578899999999987653 123333446899999999876 4432 2222 2233 89999999888763 2334
Q ss_pred HHHHcCCCCCEEec
Q 021719 216 LILDGLQNLEVLNI 229 (308)
Q Consensus 216 ~l~~~~p~L~~L~l 229 (308)
.++..+|+|+.||=
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 67778999998874
No 95
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.58 E-value=5.4e-06 Score=70.59 Aligned_cols=134 Identities=16% Similarity=0.093 Sum_probs=86.1
Q ss_pred CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021719 95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 174 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 174 (308)
...++.+.+..+....- .......+++|+.|+++++. ++... ...+..+++|++|+++++.+.......+ ..+++
T Consensus 84 l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~ 158 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQAL--PIGVFDQLVNLAELRLDRNQ-LKSLP-PRVFDSLTKLTYLSLGYNELQSLPKGVF-DKLTS 158 (270)
T ss_dssp CTTCCEEECCSSCCCCC--CTTTTTTCSSCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTT
T ss_pred CCCCCEEECCCCcCCcC--CHhHcccccCCCEEECCCCc-cCeeC-HHHhCcCcCCCEEECCCCcCCccCHhHc-cCCcc
Confidence 45678888766532210 01122457899999999863 32211 1234678999999999996653222122 35799
Q ss_pred CCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021719 175 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 235 (308)
Q Consensus 175 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i 235 (308)
|+.|+++++ ++.... .....+++|++|+|+++.++... ...+..+++|+.|+++++.-.
T Consensus 159 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLKRVP-EGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBC
T ss_pred cceeEecCCcCcEeCh-hHhccCCCcCEEECCCCcCCcCC-HHHhccccCCCEEEecCCCee
Confidence 999999886 332111 12347899999999988876322 123467899999999987643
No 96
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.58 E-value=1.9e-06 Score=84.51 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=17.4
Q ss_pred hcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecC
Q 021719 145 RMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMG 182 (308)
Q Consensus 145 ~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~ 182 (308)
..+++|++|+++++.++......+. .+++|++|++++
T Consensus 220 ~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 220 GDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISS 256 (768)
T ss_dssp TTCCSCCEEECCSSCCCSCHHHHTT-TCSSCCEEECCS
T ss_pred ccCCCCCEEECcCCcCCCcccHHHh-cCCCCCEEECCC
Confidence 3455555555555544433333332 345555555544
No 97
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.56 E-value=1.5e-06 Score=70.23 Aligned_cols=109 Identities=13% Similarity=0.084 Sum_probs=69.0
Q ss_pred CCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcE
Q 021719 123 QLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKV 201 (308)
Q Consensus 123 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~ 201 (308)
+|+.|++++. .++.......+..+++|+.|+++++.++......+. .+++|++|+++++ +..... .....+++|++
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~ 106 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE-GASHIQELQLGENKIKEISN-KMFLGLHQLKT 106 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSCCCCEECS-SSSTTCTTCCE
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC-CcccCCEEECCCCcCCccCH-HHhcCCCCCCE
Confidence 7888888876 232211111356788899999988866532222222 4788999999876 321111 11246899999
Q ss_pred EEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021719 202 LSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 235 (308)
Q Consensus 202 L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i 235 (308)
|+|+++.++... ...+..+++|++|++++..-.
T Consensus 107 L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 107 LNLYDNQISCVM-PGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp EECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBC
T ss_pred EECCCCcCCeeC-HHHhhcCCCCCEEEeCCCCcc
Confidence 999988876421 123456889999999887644
No 98
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.56 E-value=1.1e-06 Score=83.46 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=18.3
Q ss_pred cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
.+++|+.|+++++.++.... ..+..+++|++|+++++.
T Consensus 474 ~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 474 TLGRLEILVLSFCDLSSIDQ-HAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp GCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSC
T ss_pred cCCCccEEECCCCccCccCh-hhhccccCCCEEECCCCc
Confidence 45555555555544442111 122345566666666554
No 99
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.56 E-value=6.2e-06 Score=77.78 Aligned_cols=135 Identities=19% Similarity=0.184 Sum_probs=81.6
Q ss_pred cCCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCC
Q 021719 94 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR 173 (308)
Q Consensus 94 s~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~ 173 (308)
....++.+.+..+.. ++.... ....+++|+.|+++++.......+...+..+++|+.|+++++.++..........++
T Consensus 351 ~l~~L~~L~l~~n~l-~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 351 SPSSFTFLNFTQNVF-TDSVFQ-GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SCCCCCEEECCSSCC-CTTTTT-TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred CCCCceEEECCCCcc-ccchhh-hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 346788888876543 221111 124578899999998733322334455678899999999988654311111223467
Q ss_pred CCCeeEecCC-CCHHHHHHHHhcC-CCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 174 NFRELKIMGP-FDLLFASTLNMYL-PKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 174 ~L~~L~l~~~-~~~~~~~~l~~~~-p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
+|+.|+++++ +++. +...+ ++|+.|+++++.++ .+..-+..+++|++|+++++...+
T Consensus 429 ~L~~L~l~~n~l~~~----~~~~l~~~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~ 487 (562)
T 3a79_B 429 SILVLNLSSNMLTGS----VFRCLPPKVKVLDLHNNRIM--SIPKDVTHLQALQELNVASNQLKS 487 (562)
T ss_dssp TCCEEECCSSCCCGG----GGSSCCTTCSEEECCSSCCC--CCCTTTTSSCCCSEEECCSSCCCC
T ss_pred cCCEEECCCCCCCcc----hhhhhcCcCCEEECCCCcCc--ccChhhcCCCCCCEEECCCCCCCC
Confidence 8888888776 4431 22334 57888888877766 222222367788888887775443
No 100
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.55 E-value=3.4e-06 Score=72.78 Aligned_cols=108 Identities=21% Similarity=0.234 Sum_probs=51.8
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
..++|+.|++++. .++ .+...+..+++|+.|+++++.++.-....+ ..+++|+.|.++++ ++.- .......+++
T Consensus 75 ~l~~L~~L~Ls~N-~l~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~ 149 (290)
T 1p9a_G 75 TLPVLGTLDLSHN-QLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGELQELYLKGNELKTL-PPGLLTPTPK 149 (290)
T ss_dssp CCTTCCEEECCSS-CCS--SCCCCTTTCTTCCEEECCSSCCCCCCSSTT-TTCTTCCEEECTTSCCCCC-CTTTTTTCTT
T ss_pred CCCcCCEEECCCC-cCC--cCchhhccCCCCCEEECCCCcCcccCHHHH-cCCCCCCEEECCCCCCCcc-ChhhcccccC
Confidence 4566666666654 222 112223456666666666664432111111 23566666666654 2210 0111235566
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
|+.|+|+++.++.-. ..++..+++|+.|+++++.
T Consensus 150 L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 150 LEKLSLANNNLTELP-AGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp CCEEECTTSCCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCccC-HHHhcCcCCCCEEECCCCc
Confidence 666666665554211 1223445666666666554
No 101
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.54 E-value=1.4e-05 Score=76.00 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=62.7
Q ss_pred CCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcE
Q 021719 123 QLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKV 201 (308)
Q Consensus 123 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~ 201 (308)
+|+.|+|+++. +++. ..+..+++|+.|+++++.+.......+. .+++|+.|+++++ ++.- ......+|+|+.
T Consensus 233 ~L~~L~L~~n~-l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~ 305 (597)
T 3oja_B 233 ELTILKLQHNN-LTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNRLVAL--NLYGQPIPTLKV 305 (597)
T ss_dssp CCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECTTSCCCEE--ECSSSCCTTCCE
T ss_pred CCCEEECCCCC-CCCC---hhhccCCCCCEEECCCCccCCCCHHHhc-CccCCCEEECCCCCCCCC--CcccccCCCCcE
Confidence 45566666552 2221 3456778888888888766543323333 4678888888765 3210 011235788888
Q ss_pred EEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 202 LSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 202 L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
|+|+++.++. +..-+..+++|+.|++++|...+
T Consensus 306 L~Ls~N~l~~--i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 306 LDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp EECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCC
T ss_pred EECCCCCCCc--cCcccccCCCCCEEECCCCCCCC
Confidence 8888777662 22233557788888888776544
No 102
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.54 E-value=3.6e-05 Score=70.27 Aligned_cols=134 Identities=13% Similarity=0.117 Sum_probs=71.3
Q ss_pred CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHH-HHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021719 96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGIC-KAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 174 (308)
Q Consensus 96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 174 (308)
..++.+.+..+... ... ......+++|++|+++++ .++..... ..+..+++|++|+++++.+.......+...+++
T Consensus 79 ~~L~~L~Ls~n~l~-~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 79 SSLIILKLDYNQFL-QLE-TGAFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155 (455)
T ss_dssp TTCCEEECTTCTTC-EEC-TTTTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred ccCCEEeCCCCccC-ccC-hhhccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence 45666766654321 100 011134677888888776 34332111 225667788888888775543322222345778
Q ss_pred CCeeEecCC-CC---HHHHHHH------------------------------HhcCCCCcEEEeeCCCCCHHHHHHHHHc
Q 021719 175 FRELKIMGP-FD---LLFASTL------------------------------NMYLPKLKVLSLRCTTLNRDALILILDG 220 (308)
Q Consensus 175 L~~L~l~~~-~~---~~~~~~l------------------------------~~~~p~L~~L~L~~~~it~~~l~~l~~~ 220 (308)
|++|+++++ +. ...+..+ ...+++|++|+++++.++......+...
T Consensus 156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 235 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235 (455)
T ss_dssp CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence 888888764 21 1111000 1134788999999888887666555443
Q ss_pred --CCCCCEEecccC
Q 021719 221 --LQNLEVLNISHC 232 (308)
Q Consensus 221 --~p~L~~L~l~~C 232 (308)
.++|+.|++++|
T Consensus 236 ~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 236 IAGTKIQSLILSNS 249 (455)
T ss_dssp TTTCCEEEEECTTC
T ss_pred ccccceeeEeeccc
Confidence 234444444433
No 103
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.54 E-value=4.1e-05 Score=70.37 Aligned_cols=116 Identities=17% Similarity=0.076 Sum_probs=60.2
Q ss_pred CccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCC
Q 021719 97 SIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFR 176 (308)
Q Consensus 97 ~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 176 (308)
.++.+.+..+....- .. ...+++|+.|+++++. ++.. .+..+++|++|+++++.++... + ..+++|+
T Consensus 43 ~L~~L~Ls~n~l~~~---~~-l~~l~~L~~L~Ls~n~-l~~~----~~~~l~~L~~L~Ls~N~l~~~~---~-~~l~~L~ 109 (457)
T 3bz5_A 43 TLTSLDCHNSSITDM---TG-IEKLTGLTKLICTSNN-ITTL----DLSQNTNLTYLACDSNKLTNLD---V-TPLTKLT 109 (457)
T ss_dssp TCCEEECCSSCCCCC---TT-GGGCTTCSEEECCSSC-CSCC----CCTTCTTCSEEECCSSCCSCCC---C-TTCTTCC
T ss_pred CCCEEEccCCCcccC---hh-hcccCCCCEEEccCCc-CCeE----ccccCCCCCEEECcCCCCceee---c-CCCCcCC
Confidence 455666554432211 11 2346677777777652 3321 1456667777777766544321 2 2466677
Q ss_pred eeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 177 ELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 177 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
+|+++++ ++.- . ...+++|++|+++++.++... +..+++|++|++++|.
T Consensus 110 ~L~L~~N~l~~l---~-~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 110 YLNCDTNKLTKL---D-VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNK 159 (457)
T ss_dssp EEECCSSCCSCC---C-CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCS
T ss_pred EEECCCCcCCee---c-CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCC
Confidence 7777655 2221 1 235666666666665554421 3345566666666554
No 104
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.54 E-value=2.6e-05 Score=77.20 Aligned_cols=36 Identities=17% Similarity=0.092 Sum_probs=16.8
Q ss_pred cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
.+++|+.|+|+++.++ .+. .+..+++|+.|+++++.
T Consensus 571 ~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp TCTTCCEEECTTSCCC--BCC-CCCTTSEESEEECCSSC
T ss_pred cCCCCCEEECCCCCcc--cch-hhcCCCcceEEECcCCc
Confidence 4555555555544444 222 22334555555555544
No 105
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.54 E-value=1.2e-05 Score=75.82 Aligned_cols=110 Identities=11% Similarity=0.157 Sum_probs=73.6
Q ss_pred hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChH-HHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcC
Q 021719 119 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPY-LMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYL 196 (308)
Q Consensus 119 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~ 196 (308)
..+++|+.|+++++ .+++. ....+..+++|+.|+++++.++.- .+......+++|+.|+++++ +...........+
T Consensus 350 ~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l 427 (562)
T 3a79_B 350 PSPSSFTFLNFTQN-VFTDS-VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427 (562)
T ss_dssp SSCCCCCEEECCSS-CCCTT-TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC
T ss_pred cCCCCceEEECCCC-ccccc-hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc
Confidence 46789999999987 34331 223446789999999999877641 22222345789999999876 3321111123467
Q ss_pred CCCcEEEeeCCCCCHHHHHHHHHcC-CCCCEEecccCCC
Q 021719 197 PKLKVLSLRCTTLNRDALILILDGL-QNLEVLNISHCLL 234 (308)
Q Consensus 197 p~L~~L~L~~~~it~~~l~~l~~~~-p~L~~L~l~~C~~ 234 (308)
++|+.|+++++.++... .... ++|+.|++++|..
T Consensus 428 ~~L~~L~l~~n~l~~~~----~~~l~~~L~~L~L~~N~l 462 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSV----FRCLPPKVKVLDLHNNRI 462 (562)
T ss_dssp TTCCEEECCSSCCCGGG----GSSCCTTCSEEECCSSCC
T ss_pred ccCCEEECCCCCCCcch----hhhhcCcCCEEECCCCcC
Confidence 89999999988887532 2334 6899999998853
No 106
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.53 E-value=2.1e-06 Score=85.00 Aligned_cols=110 Identities=14% Similarity=0.101 Sum_probs=44.9
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHH-HHHcCCCCCeeEecCC-CCHHHHHHHHhcCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEE-IAQNCRNFRELKIMGP-FDLLFASTLNMYLP 197 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~-l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p 197 (308)
.+++|+.|+|+++. ++.. ....+..+++|++|++++|.+++..... ....+++|++|+++++ +...........++
T Consensus 71 ~L~~L~~L~Ls~N~-l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~ 148 (844)
T 3j0a_A 71 NLPNLRILDLGSSK-IYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN 148 (844)
T ss_dssp SCTTCCEEECTTCC-CCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS
T ss_pred CCCCCCEEECCCCc-Cccc-CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC
Confidence 34555555555442 2110 0122334555555555555443221111 0113455555555544 22111101123455
Q ss_pred CCcEEEeeCCCCCH---HHHHHHHHcCCCCCEEecccCC
Q 021719 198 KLKVLSLRCTTLNR---DALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 198 ~L~~L~L~~~~it~---~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
+|++|+|+++.++. ..+..+.. ++|+.|+++++.
T Consensus 149 ~L~~L~Ls~N~i~~~~~~~l~~l~~--~~L~~L~L~~n~ 185 (844)
T 3j0a_A 149 SLKSIDFSSNQIFLVCEHELEPLQG--KTLSFFSLAANS 185 (844)
T ss_dssp SCCEEEEESSCCCCCCSGGGHHHHH--CSSCCCEECCSB
T ss_pred CCCEEECCCCcCCeeCHHHcccccC--CccceEECCCCc
Confidence 55555555544432 22222111 455555555544
No 107
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.52 E-value=1.2e-05 Score=79.54 Aligned_cols=130 Identities=12% Similarity=0.012 Sum_probs=73.3
Q ss_pred CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHH-------hcCCCCCEEEeCCCCCChHHHH-
Q 021719 95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAI-------RMWRDLESLTMPSIANPPYLME- 166 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~-------~~~~~L~~L~l~~~~~~~~~l~- 166 (308)
...++.+.+..+..... +......+++|+.|+|+++..++...+...+ ..+++|+.|+++++.++ ....
T Consensus 490 L~~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~ 566 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQ--LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPAS 566 (876)
T ss_dssp CTTCCEEEEESCTTCCS--CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCH
T ss_pred CCCCCEEECcCCCCCcc--ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCCh
Confidence 35677777766542211 1112235778888888877435542222222 34558888888888655 2211
Q ss_pred -HHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCC-CCEEecccCC
Q 021719 167 -EIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQN-LEVLNISHCL 233 (308)
Q Consensus 167 -~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~-L~~L~l~~C~ 233 (308)
.+. .+++|+.|+++++ ++ .+. ....+++|+.|+|+++.++ .+..-+..+++ |+.|++++|.
T Consensus 567 ~~l~-~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 567 ASLQ-KMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp HHHT-TCTTCCEEECTTSCCC--BCC-CCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSC
T ss_pred hhhh-cCCCCCEEECCCCCcc--cch-hhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCC
Confidence 233 4778888888765 33 111 2235677777777766665 23333445566 7777776665
No 108
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.51 E-value=6.7e-06 Score=73.79 Aligned_cols=105 Identities=15% Similarity=0.066 Sum_probs=49.4
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
.+++|+.|+++++. ++.. ....+..+++|++|+++++.+..- ...+...+++|++|+++++ +..... .....+++
T Consensus 91 ~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~ 166 (390)
T 3o6n_A 91 YAHTIQKLYMGFNA-IRYL-PPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTS 166 (390)
T ss_dssp TCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCBCCT-TTTSSCTT
T ss_pred CCCCcCEEECCCCC-CCcC-CHHHhcCCCCCCEEECCCCccCcC-CHHHhcCCCCCcEEECCCCccCccCh-hhccCCCC
Confidence 35566666666542 2110 012234556666666666644311 1111123566666666654 221100 11235666
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccC
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHC 232 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C 232 (308)
|++|+++++.++... +..+++|+.|+++++
T Consensus 167 L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 167 LQNLQLSSNRLTHVD----LSLIPSLFHANVSYN 196 (390)
T ss_dssp CCEEECCSSCCSBCC----GGGCTTCSEEECCSS
T ss_pred CCEEECCCCcCCccc----cccccccceeecccc
Confidence 666666666555432 233555555555544
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.50 E-value=1.8e-05 Score=74.73 Aligned_cols=80 Identities=15% Similarity=0.098 Sum_probs=52.5
Q ss_pred CCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEE
Q 021719 149 DLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVL 227 (308)
Q Consensus 149 ~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L 227 (308)
.|+.|+++++.++. +..+ ..+++|+.|+++++ ++ . +......+++|+.|+|++|.++. +. -+..+++|+.|
T Consensus 442 ~L~~L~Ls~n~l~~--lp~~-~~l~~L~~L~Ls~N~l~-~-lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L 513 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCHL-EQLLLVTHLDLSHNRLR-A-LPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQEL 513 (567)
T ss_dssp TCSEEECTTSCCSS--CCCG-GGGTTCCEEECCSSCCC-C-CCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEE
T ss_pred CceEEEecCCCCCC--CcCc-cccccCcEeecCccccc-c-cchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEE
Confidence 68888888886543 2222 34778888888876 33 1 11123478888888888887764 33 34568888888
Q ss_pred ecccCCCcC
Q 021719 228 NISHCLLID 236 (308)
Q Consensus 228 ~l~~C~~i~ 236 (308)
+++++...+
T Consensus 514 ~Ls~N~l~~ 522 (567)
T 1dce_A 514 LLCNNRLQQ 522 (567)
T ss_dssp ECCSSCCCS
T ss_pred ECCCCCCCC
Confidence 888875433
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.49 E-value=5.8e-06 Score=68.25 Aligned_cols=111 Identities=16% Similarity=0.202 Sum_probs=75.4
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCc
Q 021719 122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK 200 (308)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~ 200 (308)
++|+.|++++. .++... ...+..+++|+.|+++++.++......+. .+++|++|+++++ ++. ........+++|+
T Consensus 32 ~~l~~L~l~~n-~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~ 107 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQ-GLRSLNSLVLYGNKITE-LPKSLFEGLFSLQ 107 (220)
T ss_dssp TTCCEEECCSS-CCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTT-TCSSCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred cCCCEEECCCC-cCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhh-CCcCCCEEECCCCcCCc-cCHhHccCCCCCC
Confidence 57899999876 332210 12346789999999999976533222333 5799999999987 331 1112235789999
Q ss_pred EEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcCC
Q 021719 201 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV 237 (308)
Q Consensus 201 ~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~ 237 (308)
.|+|+++.++.... ..+..+++|++|+++++...+.
T Consensus 108 ~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~ 143 (220)
T 2v9t_B 108 LLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTI 143 (220)
T ss_dssp EEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCC
T ss_pred EEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEE
Confidence 99999888764321 2345789999999999875443
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.49 E-value=3.3e-06 Score=69.75 Aligned_cols=111 Identities=11% Similarity=0.084 Sum_probs=74.0
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCc
Q 021719 122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK 200 (308)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~ 200 (308)
+.++.|+|++. .++...-...+..+++|+.|+++++.++.-.-..+ ..+++|+.|+++++ ++... ......+++|+
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~ 108 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF-EGASGVNEILLTSNRLENVQ-HKMFKGLESLK 108 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCCCC-GGGGTTCSSCC
T ss_pred CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHh-CCCCCCCEEECCCCccCccC-HhHhcCCcCCC
Confidence 45788888876 33321111235789999999999997653222223 35799999999987 33211 12235799999
Q ss_pred EEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 201 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 201 ~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
+|+|+++.++...- ..+..+++|++|+++++...+
T Consensus 109 ~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 143 (220)
T 2v70_A 109 TLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITT 143 (220)
T ss_dssp EEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCC
T ss_pred EEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCE
Confidence 99999888764211 224568999999999986444
No 112
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.49 E-value=1.2e-05 Score=78.70 Aligned_cols=131 Identities=16% Similarity=0.066 Sum_probs=59.0
Q ss_pred CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHH--HHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcC
Q 021719 95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKT--GICKAIRMWRDLESLTMPSIANPPYLMEEIAQNC 172 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~ 172 (308)
...++.+.+..+.... .....+...+++|++|+++++. ++.. .....+..+++|++|+++++.+....- + ..+
T Consensus 125 l~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~-~~l 199 (768)
T 3rgz_A 125 CSGLKFLNVSSNTLDF-PGKVSGGLKLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGNKISGDVD--V-SRC 199 (768)
T ss_dssp CTTCCEEECCSSEEEC-CSSCCSCCCCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--C-TTC
T ss_pred CCCCCEEECcCCccCC-cCCHHHhccCCCCCEEECCCCc-cCCcCChhhhhhccCCCCCEEECCCCcccccCC--c-ccC
Confidence 4567777776542210 0000111345677777777663 3221 111224566666666666653321100 0 245
Q ss_pred CCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 173 RNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 173 ~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
++|++|+++++ +.... .. ...+++|++|+++++.++.... ..+..+++|++|++++|.
T Consensus 200 ~~L~~L~Ls~n~l~~~~-~~-l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~ 258 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGI-PF-LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQ 258 (768)
T ss_dssp TTCCEEECCSSCCCSCC-CB-CTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECCSSC
T ss_pred CcCCEEECcCCcCCCCC-cc-cccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECCCCc
Confidence 56666666554 21100 01 2345555555555555543211 223445555555555553
No 113
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.48 E-value=7.9e-06 Score=71.58 Aligned_cols=59 Identities=10% Similarity=0.036 Sum_probs=31.3
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHH-HHHHHHcCCCCCeeEecC
Q 021719 122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYL-MEEIAQNCRNFRELKIMG 182 (308)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-l~~l~~~~~~L~~L~l~~ 182 (308)
++|+.|+++++. ++.. ....+..+++|+.|+++++.+.... .......+++|+.|++++
T Consensus 121 ~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 121 KTLQELRVHENE-ITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp TTCCEEECCSSC-CCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred ccccEEECCCCc-cccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 577777777652 2211 1233566777788877777554211 111112355666666554
No 114
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.48 E-value=9.2e-06 Score=74.48 Aligned_cols=107 Identities=21% Similarity=0.211 Sum_probs=47.9
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
.+++|+.|+++++..++... ...+..+++|+.|+++++.+..- ..+ ..+++|+.|+++++ ++.... .....+++
T Consensus 169 ~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~--~~~-~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~ 243 (452)
T 3zyi_A 169 RVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCNIKDM--PNL-TPLVGLEELEMSGNHFPEIRP-GSFHGLSS 243 (452)
T ss_dssp TCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTSCCSSC--CCC-TTCTTCCEEECTTSCCSEECG-GGGTTCTT
T ss_pred cCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCCccccc--ccc-cccccccEEECcCCcCcccCc-ccccCccC
Confidence 46777777777654432211 11234566666666666644321 111 23455666666554 221100 11224455
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccC
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHC 232 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C 232 (308)
|+.|+|+++.++.... ..+..+++|+.|+|+++
T Consensus 244 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 244 LKKLWVMNSQVSLIER-NAFDGLASLVELNLAHN 276 (452)
T ss_dssp CCEEECTTSCCCEECT-TTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCcCceECH-HHhcCCCCCCEEECCCC
Confidence 5555555444432111 11233455555555544
No 115
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.47 E-value=7.6e-06 Score=74.77 Aligned_cols=107 Identities=20% Similarity=0.200 Sum_probs=48.1
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
.+++|+.|++.++..++... ...+..+++|++|+++++.++.- ..+ ..+++|+.|+++++ ++.... .....+++
T Consensus 158 ~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~--~~~-~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~ 232 (440)
T 3zyj_A 158 RIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCNLREI--PNL-TPLIKLDELDLSGNHLSAIRP-GSFQGLMH 232 (440)
T ss_dssp TCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSCCSSC--CCC-TTCSSCCEEECTTSCCCEECT-TTTTTCTT
T ss_pred hCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCcCccc--ccc-CCCcccCEEECCCCccCccCh-hhhccCcc
Confidence 46777777777654332211 11234566677777766643311 111 23556666666554 221100 01124455
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccC
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHC 232 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C 232 (308)
|+.|+|+++.++.... ..+..+++|+.|+|+++
T Consensus 233 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 233 LQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHN 265 (440)
T ss_dssp CCEEECTTCCCCEECT-TSSTTCTTCCEEECTTS
T ss_pred CCEEECCCCceeEECh-hhhcCCCCCCEEECCCC
Confidence 5555555444432111 11223445555555444
No 116
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.46 E-value=6.1e-06 Score=75.69 Aligned_cols=134 Identities=21% Similarity=0.115 Sum_probs=78.7
Q ss_pred CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCC
Q 021719 96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF 175 (308)
Q Consensus 96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L 175 (308)
..++.+.+..+... .-. ......+++|+.|+|+++ .++.. ....+..+++|++|+++++.++...... ...+++|
T Consensus 75 ~~l~~L~L~~n~i~-~~~-~~~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L 149 (452)
T 3zyi_A 75 SNTRYLNLMENNIQ-MIQ-ADTFRHLHHLEVLQLGRN-SIRQI-EVGAFNGLASLNTLELFDNWLTVIPSGA-FEYLSKL 149 (452)
T ss_dssp TTCSEEECCSSCCC-EEC-TTTTTTCTTCCEEECCSS-CCCEE-CTTTTTTCTTCCEEECCSSCCSBCCTTT-SSSCTTC
T ss_pred CCccEEECcCCcCc-eEC-HHHcCCCCCCCEEECCCC-ccCCc-ChhhccCcccCCEEECCCCcCCccChhh-hcccCCC
Confidence 45677777654321 100 011235788999998876 33221 1123557888999999888654221111 2257889
Q ss_pred CeeEecCC-CCHHHHHHHHhcCCCCcEEEeeC-CCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 176 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRC-TTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 176 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~-~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
++|+++++ +..-. ......+++|++|+++. +.++.-. ...+..+++|++|++++|...+
T Consensus 150 ~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 150 RELWLRNNPIESIP-SYAFNRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp CEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTSCCSS
T ss_pred CEEECCCCCcceeC-HhHHhcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCCcccc
Confidence 99999876 33111 11234788999999985 4443211 1134568899999999886444
No 117
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.42 E-value=1.6e-05 Score=73.22 Aligned_cols=89 Identities=21% Similarity=0.156 Sum_probs=40.8
Q ss_pred hcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCC
Q 021719 145 RMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQN 223 (308)
Q Consensus 145 ~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~ 223 (308)
..+++|++|+++++.+.......+. .+++|+.|++.++ ++.... .....+++|+.|+++++.++...- ..+..+++
T Consensus 125 ~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~ 201 (477)
T 2id5_A 125 QDLYNLKSLEVGDNDLVYISHRAFS-GLNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRLRHLNINAIRD-YSFKRLYR 201 (477)
T ss_dssp TTCTTCCEEEECCTTCCEECTTSST-TCTTCCEEEEESCCCSSCCH-HHHTTCTTCCEEEEESCCCCEECT-TCSCSCTT
T ss_pred cccccCCEEECCCCccceeChhhcc-CCCCCCEEECCCCcCcccCh-hHhcccCCCcEEeCCCCcCcEeCh-hhcccCcc
Confidence 3445555555555433221111111 3455666665554 221111 112356666666666555432111 12344667
Q ss_pred CCEEecccCCCcC
Q 021719 224 LEVLNISHCLLID 236 (308)
Q Consensus 224 L~~L~l~~C~~i~ 236 (308)
|++|++++|..++
T Consensus 202 L~~L~l~~~~~~~ 214 (477)
T 2id5_A 202 LKVLEISHWPYLD 214 (477)
T ss_dssp CCEEEEECCTTCC
T ss_pred cceeeCCCCcccc
Confidence 7777777665443
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.42 E-value=7e-06 Score=73.06 Aligned_cols=110 Identities=16% Similarity=0.111 Sum_probs=55.5
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
.+++|+.|+|+++ .++... ...+..+++|++|+++++.+..-.-..+ ..+++|+.|+++++ +..-.. .....+++
T Consensus 62 ~l~~L~~L~L~~N-~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~ 137 (361)
T 2xot_A 62 RLTNLHSLLLSHN-HLNFIS-SEAFVPVPNLRYLDLSSNHLHTLDEFLF-SDLQALEVLLLYNNHIVVVDR-NAFEDMAQ 137 (361)
T ss_dssp CCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECT-TTTTTCTT
T ss_pred cccccCEEECCCC-cCCccC-hhhccCCCCCCEEECCCCcCCcCCHHHh-CCCcCCCEEECCCCcccEECH-HHhCCccc
Confidence 4567777777765 222110 1124466777777777775442111111 24567777777665 221101 11235677
Q ss_pred CcEEEeeCCCCCHHHHHHH--HHcCCCCCEEecccCC
Q 021719 199 LKVLSLRCTTLNRDALILI--LDGLQNLEVLNISHCL 233 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l--~~~~p~L~~L~l~~C~ 233 (308)
|++|+|+++.++.-....+ ...+++|+.|+|+++.
T Consensus 138 L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 138 LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 7777777666553111110 1346777777777654
No 119
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.42 E-value=1.1e-05 Score=76.63 Aligned_cols=113 Identities=13% Similarity=0.067 Sum_probs=76.6
Q ss_pred hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHH--HHHHcCCCCCeeEecCC-CCHHHHHHHHhc
Q 021719 119 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLME--EIAQNCRNFRELKIMGP-FDLLFASTLNMY 195 (308)
Q Consensus 119 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~--~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~ 195 (308)
..+++|+.|+++++. ++.. ....+..+++|++|+++++.+++..+. .....+++|+.|+++++ ++...... ...
T Consensus 422 ~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~ 498 (606)
T 3t6q_A 422 QNLHLLKVLNLSHSL-LDIS-SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA-FTS 498 (606)
T ss_dssp TTCTTCCEEECTTCC-CBTT-CTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT-TTT
T ss_pred hCcccCCEEECCCCc-cCCc-CHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh-hcc
Confidence 457899999999873 3221 123456789999999999976542221 11235899999999887 33211112 247
Q ss_pred CCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 196 LPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 196 ~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
+++|++|+|+++.++..... .+..+++| .|+++++...+
T Consensus 499 l~~L~~L~Ls~N~l~~~~~~-~l~~l~~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 499 LKMMNHVDLSHNRLTSSSIE-ALSHLKGI-YLNLASNHISI 537 (606)
T ss_dssp CTTCCEEECCSSCCCGGGGG-GGTTCCSC-EEECCSSCCCC
T ss_pred ccCCCEEECCCCccCcCChh-HhCccccc-EEECcCCcccc
Confidence 89999999999888865432 34568888 99999886443
No 120
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.41 E-value=8.9e-06 Score=75.44 Aligned_cols=38 Identities=11% Similarity=0.075 Sum_probs=16.3
Q ss_pred cCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC
Q 021719 146 MWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP 183 (308)
Q Consensus 146 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 183 (308)
.+++|+.|+++++.++......+...+++|+.|+++++
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 34455555555544433222233323444444444443
No 121
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.41 E-value=5.9e-06 Score=70.46 Aligned_cols=110 Identities=18% Similarity=0.146 Sum_probs=74.3
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCc
Q 021719 122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK 200 (308)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~ 200 (308)
++|+.|+++++ .++... ...+..+++|++|+++++.+.......+ ..+++|++|+++++ +..... .....+++|+
T Consensus 28 ~~l~~L~ls~n-~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~ 103 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQ 103 (276)
T ss_dssp TTCCEEECTTC-CCCEEC-TTTTTTCTTCSEEECTTCCCCEECTTTT-TTCTTCCEEECTTCCCCEECT-TTTTTCTTCC
T ss_pred CCccEEECCCC-cccccC-HhHhccccCCcEEECCCCcCCccCHHHc-cCCcCCCEEECCCCccCccCh-hhhcCCcccc
Confidence 57999999987 333211 1245678999999999997653222222 35799999999886 332111 1234789999
Q ss_pred EEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 201 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 201 ~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
+|+++++.++...-. .+..+++|++|+++++...+
T Consensus 104 ~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 104 KLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp EEECTTSCCCCSTTC-CCTTCTTCCEEECCSSCCCC
T ss_pred EEECCCCCccccCch-hcccCCCCCEEECcCCccce
Confidence 999998776542211 14578999999999986443
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.38 E-value=1.2e-05 Score=78.40 Aligned_cols=107 Identities=20% Similarity=0.100 Sum_probs=63.1
Q ss_pred hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCC
Q 021719 119 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLP 197 (308)
Q Consensus 119 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p 197 (308)
...++|+.|+|+++. +. .+..-+..+++|+.|+|++|.++ ..-..+ ..+++|+.|+|+++ ++ . +..-...++
T Consensus 221 ~~l~~L~~L~Ls~n~-l~--~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls~N~l~-~-lp~~~~~l~ 293 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQ-IF--NISANIFKYDFLTRLYLNGNSLT-ELPAEI-KNLSNLRVLDLSHNRLT-S-LPAELGSCF 293 (727)
T ss_dssp -CCCCCCEEECTTSC-CS--CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG-GGGTTCCEEECTTSCCS-S-CCSSGGGGT
T ss_pred ccCCCCcEEECCCCC-CC--CCChhhcCCCCCCEEEeeCCcCc-ccChhh-hCCCCCCEEeCcCCcCC-c-cChhhcCCC
Confidence 346778888887763 22 11222336778888888877654 111223 34677888888776 33 1 111124677
Q ss_pred CCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCC
Q 021719 198 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 234 (308)
Q Consensus 198 ~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~ 234 (308)
+|++|+|++|.++ .+..-+..+++|+.|+|+++..
T Consensus 294 ~L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 294 QLKYFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp TCSEEECCSSCCC--CCCSSTTSCTTCCCEECTTSCC
T ss_pred CCCEEECCCCCCC--ccChhhhcCCCccEEeCCCCcc
Confidence 8888888877665 2222245677888888877653
No 123
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.37 E-value=3.5e-05 Score=73.83 Aligned_cols=93 Identities=14% Similarity=0.209 Sum_probs=65.6
Q ss_pred HHHhcCCCCCEEEeCCCCCChH-----------------HHHHHH-HcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEE
Q 021719 142 KAIRMWRDLESLTMPSIANPPY-----------------LMEEIA-QNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVL 202 (308)
Q Consensus 142 ~~~~~~~~L~~L~l~~~~~~~~-----------------~l~~l~-~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L 202 (308)
..+..+++|++|+++++.++.. ....++ ..+++|++|+++++ +..... .....+++|++|
T Consensus 200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L 278 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLI 278 (636)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEE
T ss_pred HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEE
Confidence 3466889999999999987763 222222 25899999999886 332111 123479999999
Q ss_pred EeeCCC-CCHHHHHHHHHc------CCCCCEEecccCCCc
Q 021719 203 SLRCTT-LNRDALILILDG------LQNLEVLNISHCLLI 235 (308)
Q Consensus 203 ~L~~~~-it~~~l~~l~~~------~p~L~~L~l~~C~~i 235 (308)
+++++. ++...+..-+.. +++|++|++++|...
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 999988 887333333333 599999999998644
No 124
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.36 E-value=2.4e-05 Score=72.01 Aligned_cols=109 Identities=18% Similarity=0.110 Sum_probs=44.8
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
.+++|+.|+|+++. ++... ...+..+++|++|+++++.+.......+ ..+++|++|+++++ +....... ...+++
T Consensus 78 ~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~ 153 (477)
T 2id5_A 78 NLFNLRTLGLRSNR-LKLIP-LGVFTGLSNLTKLDISENKIVILLDYMF-QDLYNLKSLEVGDNDLVYISHRA-FSGLNS 153 (477)
T ss_dssp TCTTCCEEECCSSC-CCSCC-TTSSTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEEECCTTCCEECTTS-STTCTT
T ss_pred CCccCCEEECCCCc-CCccC-cccccCCCCCCEEECCCCccccCChhHc-cccccCCEEECCCCccceeChhh-ccCCCC
Confidence 34555555555441 21100 0112345555555555554332111111 23455555555543 11100001 124555
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
|++|+++++.++... ...+..+++|+.|+++++.
T Consensus 154 L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 154 LEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp CCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCC
T ss_pred CCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCc
Confidence 555555554443211 1223445555555555543
No 125
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.36 E-value=1.6e-05 Score=73.74 Aligned_cols=108 Identities=14% Similarity=0.043 Sum_probs=72.9
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
.+++|+.|+|+++ .++......+...+++|+.|++++|.++.. .... .+++|+.|+++++ ++... .. ...+++
T Consensus 142 ~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~-~l~~L~~L~Ls~N~l~~~~-~~-~~~l~~ 215 (487)
T 3oja_A 142 CRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQV-VFAKLKTLDLSSNKLAFMG-PE-FQSAAG 215 (487)
T ss_dssp GGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCC-CCTTCCEEECCSSCCCEEC-GG-GGGGTT
T ss_pred CCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCccccc--cccc-cCCCCCEEECCCCCCCCCC-Hh-HcCCCC
Confidence 4688889988876 443322233344788999999999876533 1111 4789999999886 33211 11 347899
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 235 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i 235 (308)
|+.|+|+++.++. +...+..+++|+.|+++++...
T Consensus 216 L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 216 VTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBC
T ss_pred ccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCc
Confidence 9999999888873 3333456789999999887644
No 126
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.35 E-value=1.5e-05 Score=75.79 Aligned_cols=105 Identities=15% Similarity=0.066 Sum_probs=44.2
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
.+++|+.|+|+++. ++.. ....+..+++|+.|+++++.++.-. ..+...+++|++|+++++ +..... .....+++
T Consensus 97 ~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~ 172 (597)
T 3oja_B 97 YAHTIQKLYMGFNA-IRYL-PPHVFQNVPLLTVLVLERNDLSSLP-RGIFHNTPKLTTLSMSNNNLERIED-DTFQATTS 172 (597)
T ss_dssp TCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTT
T ss_pred CCCCCCEEECCCCc-CCCC-CHHHHcCCCCCCEEEeeCCCCCCCC-HHHhccCCCCCEEEeeCCcCCCCCh-hhhhcCCc
Confidence 34555555555442 2110 0112344555555555555433110 111123455566655554 211100 01124556
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccC
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHC 232 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C 232 (308)
|++|+++++.++... ...+++|+.|+++++
T Consensus 173 L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 173 LQNLQLSSNRLTHVD----LSLIPSLFHANVSYN 202 (597)
T ss_dssp CCEEECTTSCCSBCC----GGGCTTCSEEECCSS
T ss_pred CcEEECcCCCCCCcC----hhhhhhhhhhhcccC
Confidence 666666555544321 233455555555444
No 127
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.34 E-value=6.6e-05 Score=69.01 Aligned_cols=101 Identities=19% Similarity=0.105 Sum_probs=76.8
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~ 198 (308)
.+++|+.|+++++ .+++. . .+..+++|++|+++++.++.-. + ..+++|++|+++++ ++.. . ...+++
T Consensus 40 ~l~~L~~L~Ls~n-~l~~~--~-~l~~l~~L~~L~Ls~n~l~~~~---~-~~l~~L~~L~Ls~N~l~~~---~-~~~l~~ 107 (457)
T 3bz5_A 40 QLATLTSLDCHNS-SITDM--T-GIEKLTGLTKLICTSNNITTLD---L-SQNTNLTYLACDSNKLTNL---D-VTPLTK 107 (457)
T ss_dssp HHTTCCEEECCSS-CCCCC--T-TGGGCTTCSEEECCSSCCSCCC---C-TTCTTCSEEECCSSCCSCC---C-CTTCTT
T ss_pred HcCCCCEEEccCC-CcccC--h-hhcccCCCCEEEccCCcCCeEc---c-ccCCCCCEEECcCCCCcee---e-cCCCCc
Confidence 4689999999987 44332 1 3678999999999999766431 2 35899999999987 4332 1 358999
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
|++|+++++.++.-. +..+++|++|+++++....
T Consensus 108 L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~ 141 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTE 141 (457)
T ss_dssp CCEEECCSSCCSCCC----CTTCTTCCEEECTTSCCSC
T ss_pred CCEEECCCCcCCeec----CCCCCcCCEEECCCCccce
Confidence 999999988887532 5679999999999886433
No 128
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.34 E-value=1.1e-05 Score=73.59 Aligned_cols=134 Identities=19% Similarity=0.167 Sum_probs=82.7
Q ss_pred CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCC
Q 021719 96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF 175 (308)
Q Consensus 96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L 175 (308)
..++.+.+..+... .-.. .....+++|+.|+|+++. ++... ...+..+++|++|+++++.++.-.-..+ ..+++|
T Consensus 64 ~~l~~L~L~~n~i~-~~~~-~~~~~l~~L~~L~Ls~n~-i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L 138 (440)
T 3zyj_A 64 TNTRLLNLHENQIQ-IIKV-NSFKHLRHLEILQLSRNH-IRTIE-IGAFNGLANLNTLELFDNRLTTIPNGAF-VYLSKL 138 (440)
T ss_dssp TTCSEEECCSCCCC-EECT-TTTSSCSSCCEEECCSSC-CCEEC-GGGGTTCSSCCEEECCSSCCSSCCTTTS-CSCSSC
T ss_pred CCCcEEEccCCcCC-eeCH-HHhhCCCCCCEEECCCCc-CCccC-hhhccCCccCCEEECCCCcCCeeCHhHh-hccccC
Confidence 45677777654321 1000 112357899999999873 33211 1345678999999999986552211122 357899
Q ss_pred CeeEecCC-CCHHHHHHHHhcCCCCcEEEeeC-CCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 176 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRC-TTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 176 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~-~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
++|+++++ +..-. ......+++|++|+++. +.++... ...+..+++|++|++++|...+
T Consensus 139 ~~L~L~~N~i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 139 KELWLRNNPIESIP-SYAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp CEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSCCSS
T ss_pred ceeeCCCCcccccC-HHHhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCcCcc
Confidence 99999876 33111 11234789999999985 4443211 1234678999999999986444
No 129
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.33 E-value=1e-05 Score=69.79 Aligned_cols=110 Identities=16% Similarity=0.077 Sum_probs=74.6
Q ss_pred hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCC
Q 021719 119 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLP 197 (308)
Q Consensus 119 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p 197 (308)
..+++|+.|+|+++. ++... ....+++|+.|+++++.+.. +......+++|+.|+++++ ++.-. ......++
T Consensus 52 ~~l~~L~~L~L~~n~-l~~~~---~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N~l~~l~-~~~~~~l~ 124 (290)
T 1p9a_G 52 MPYTRLTQLNLDRAE-LTKLQ---VDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLP-LGALRGLG 124 (290)
T ss_dssp TTCTTCCEEECTTSC-CCEEE---CCSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEECCSSCCCCCC-SSTTTTCT
T ss_pred hcCCCCCEEECCCCc-cCccc---CCCCCCcCCEEECCCCcCCc--CchhhccCCCCCEEECCCCcCcccC-HHHHcCCC
Confidence 357899999999873 33211 11578999999999996541 1112245789999999886 33111 11234789
Q ss_pred CCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 198 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 198 ~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
+|++|+|+++.++... ...+..+++|+.|+++++....
T Consensus 125 ~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 125 ELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp TCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCEEECCCCCCCccC-hhhcccccCCCEEECCCCcCCc
Confidence 9999999988876321 1234568999999999886443
No 130
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.31 E-value=0.00027 Score=59.95 Aligned_cols=90 Identities=18% Similarity=0.200 Sum_probs=63.7
Q ss_pred HHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChH-HHHHHHHcCCCCCeeEecCC-CCH-----
Q 021719 114 LTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPY-LMEEIAQNCRNFRELKIMGP-FDL----- 186 (308)
Q Consensus 114 l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~l~~l~~~~~~L~~L~l~~~-~~~----- 186 (308)
+..+...+|+|++|+|++.....-.++...+..+++|+.|+|+++.+.+. .+..+. .. +|++|.+.++ +..
T Consensus 162 l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~-~l-~L~~L~L~~Npl~~~~~~~ 239 (267)
T 3rw6_A 162 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GL-KLEELWLDGNSLCDTFRDQ 239 (267)
T ss_dssp HHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT-TS-CCSEEECTTSTTGGGCSSH
T ss_pred HHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc-cC-CcceEEccCCcCccccCcc
Confidence 44455679999999999874433334556677999999999999977643 333332 23 8999999886 332
Q ss_pred -HHHHHHHhcCCCCcEEEee
Q 021719 187 -LFASTLNMYLPKLKVLSLR 205 (308)
Q Consensus 187 -~~~~~l~~~~p~L~~L~L~ 205 (308)
.....+...+|+|+.|+=.
T Consensus 240 ~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 240 STYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHHHHCTTCCEESSC
T ss_pred hhHHHHHHHHCcccCeECCc
Confidence 3344566789999998743
No 131
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.26 E-value=3.1e-06 Score=73.81 Aligned_cols=111 Identities=15% Similarity=0.062 Sum_probs=72.9
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCC-CCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCC
Q 021719 122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPS-IANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL 199 (308)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L 199 (308)
.+++.|+|+++.......+...+..+++|+.|++++ +.+.......+. .+++|++|+++++ ++..... ....+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPD-FLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEECCG-GGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCeeCCcCCH-HHhCCCCC
Confidence 578888888763221001234567899999999994 543322222333 5899999999875 3211111 23479999
Q ss_pred cEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCc
Q 021719 200 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 235 (308)
Q Consensus 200 ~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i 235 (308)
++|+++++.++.. +...+..+++|++|+++++...
T Consensus 128 ~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~ 162 (313)
T 1ogq_A 128 VTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRIS 162 (313)
T ss_dssp CEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCE
T ss_pred CEEeCCCCccCCc-CChHHhcCCCCCeEECcCCccc
Confidence 9999998776531 1223467999999999998743
No 132
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.16 E-value=4.7e-05 Score=73.30 Aligned_cols=132 Identities=20% Similarity=0.134 Sum_probs=84.9
Q ss_pred CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCC
Q 021719 96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF 175 (308)
Q Consensus 96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L 175 (308)
..++.+.+..+.... ........+++|++|+++++. ++.. ....+..+++|+.|+++++.+..-.-..++ .+++|
T Consensus 25 ~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~-~l~~L 99 (680)
T 1ziw_A 25 TNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNT-ISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFA-FCTNL 99 (680)
T ss_dssp TTCSEEECCSSCCCC--CCGGGGGGGTTCSEEECCSSC-CCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTT-TCTTC
T ss_pred CCCcEEECCCCCCCC--cCHHHHhCCCcCcEEECCCCc-cCcc-CHHHHhcccCcCEEECCCCccCccChhhhc-cCCCC
Confidence 578888887653221 011123457999999999863 3221 123456889999999999865422111222 58999
Q ss_pred CeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCC
Q 021719 176 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 234 (308)
Q Consensus 176 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~ 234 (308)
++|+++++ +..-... ....+++|++|+++++.++.... ..+..+++|++|+++++..
T Consensus 100 ~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNN-PFVKQKNLITLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp SEEECCSSCCCCCCSC-TTTTCTTCCEEECCSSCCSCCCC-CSSSCCTTCCEEECCSSCC
T ss_pred CEEECCCCccCccChh-HccccCCCCEEECCCCcccccCc-hhhcccccCCEEEccCCcc
Confidence 99999876 3211101 12478999999999887754321 1235689999999998853
No 133
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.15 E-value=1.9e-05 Score=69.16 Aligned_cols=37 Identities=27% Similarity=0.349 Sum_probs=19.9
Q ss_pred cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCC
Q 021719 195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 233 (308)
Q Consensus 195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~ 233 (308)
.+++|++|+++++.++ .+..-+..+++|+.|+++++.
T Consensus 239 ~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp GCTTCCEEECCSSCCC--BCCTTGGGCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCcCe--ecChhhhcCccCCEEECCCCC
Confidence 5566666666655554 222223455666666666554
No 134
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.13 E-value=1.4e-05 Score=70.98 Aligned_cols=110 Identities=16% Similarity=0.077 Sum_probs=73.8
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHh-cCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCC
Q 021719 122 PQLKRLVMPAWNRIKKTGICKAIR-MWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL 199 (308)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L 199 (308)
+.++.|+|++. .++... ...+. .+++|+.|+++++.++.-....+. .+++|+.|+++++ +..-. ......+++|
T Consensus 39 ~~l~~L~Ls~N-~l~~l~-~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L 114 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLR-AEWTPTRLTNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLSSNHLHTLD-EFLFSDLQAL 114 (361)
T ss_dssp TTCSEEECCSS-CCCEEC-TTSSSSCCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEEC-TTTTTTCTTC
T ss_pred CCCCEEECCCC-CCCccC-hhhhhhcccccCEEECCCCcCCccChhhcc-CCCCCCEEECCCCcCCcCC-HHHhCCCcCC
Confidence 45889999876 343211 11223 789999999999976532222232 5899999999987 33111 1123478999
Q ss_pred cEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 200 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 200 ~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
+.|+|+++.++... ...+..+++|+.|+|+++...+
T Consensus 115 ~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 115 EVLLLYNNHIVVVD-RNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp CEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCS
T ss_pred CEEECCCCcccEEC-HHHhCCcccCCEEECCCCcCCe
Confidence 99999998886421 1234678999999999886443
No 135
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.08 E-value=1.3e-05 Score=76.24 Aligned_cols=84 Identities=17% Similarity=0.143 Sum_probs=35.2
Q ss_pred hcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcC-C
Q 021719 145 RMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGL-Q 222 (308)
Q Consensus 145 ~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~-p 222 (308)
..+++|+.|++++|.+....-..+ ..+++|+.|+++++ ++.-.. .....+++|+.|+|+++.++...-. .+..+ +
T Consensus 491 ~~l~~L~~L~Ls~N~L~~l~~~~f-~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~ 567 (635)
T 4g8a_A 491 TELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTSKKQ-ELQHFPS 567 (635)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTSCCCBCCC-GGGTTCTTCCEEECTTSCCCBCCSS-CTTCCCT
T ss_pred hhccccCEEECCCCccCCcChHHH-cCCCCCCEEECCCCcCCCCCh-hHHhCCCCCCEEECCCCcCCCCCHH-HHHhhhC
Confidence 345555555555554332111111 13455555555554 211000 0123455566666655554321111 11222 3
Q ss_pred CCCEEeccc
Q 021719 223 NLEVLNISH 231 (308)
Q Consensus 223 ~L~~L~l~~ 231 (308)
+|+.|++++
T Consensus 568 ~L~~L~L~~ 576 (635)
T 4g8a_A 568 SLAFLNLTQ 576 (635)
T ss_dssp TCCEEECTT
T ss_pred cCCEEEeeC
Confidence 555666554
No 136
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.08 E-value=4e-05 Score=73.80 Aligned_cols=39 Identities=10% Similarity=0.107 Sum_probs=18.7
Q ss_pred HhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC
Q 021719 144 IRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP 183 (308)
Q Consensus 144 ~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 183 (308)
+..+++|+.|+++++.++.-....+ ..+++|+.|+++++
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~i~~~~~-~~l~~L~~L~Ls~N 514 (680)
T 1ziw_A 476 FQPLRNLTILDLSNNNIANINDDML-EGLEKLEILDLQHN 514 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSS
T ss_pred cccCCCCCEEECCCCCCCcCChhhh-ccccccCEEeCCCC
Confidence 3455666666666664332111111 23555666666554
No 137
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.02 E-value=4.7e-05 Score=75.36 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=17.0
Q ss_pred cCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccC
Q 021719 195 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHC 232 (308)
Q Consensus 195 ~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C 232 (308)
.+++|++|+|+++.++.......+..+++|++|+++++
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 44555555555444433222122344555555555544
No 138
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.88 E-value=0.00092 Score=63.74 Aligned_cols=75 Identities=20% Similarity=0.132 Sum_probs=47.0
Q ss_pred CCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCC
Q 021719 147 WRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLE 225 (308)
Q Consensus 147 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~ 225 (308)
+++|+.|++++|.++. +...+++|+.|+++++ ++. +...+++|+.|+|++|.++ .+...+..+++|+
T Consensus 220 ~~~L~~L~Ls~N~L~~-----lp~~l~~L~~L~Ls~N~L~~-----lp~~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~ 287 (622)
T 3g06_A 220 PSGLKELIVSGNRLTS-----LPVLPSELKELMVSGNRLTS-----LPMLPSGLLSLSVYRNQLT--RLPESLIHLSSET 287 (622)
T ss_dssp CTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCC--SCCGGGGGSCTTC
T ss_pred CCCCCEEEccCCccCc-----CCCCCCcCcEEECCCCCCCc-----CCcccccCcEEeCCCCCCC--cCCHHHhhccccC
Confidence 3567777777765442 1134577777777765 321 1125677888888877776 3333456678888
Q ss_pred EEecccCC
Q 021719 226 VLNISHCL 233 (308)
Q Consensus 226 ~L~l~~C~ 233 (308)
.|+++++.
T Consensus 288 ~L~L~~N~ 295 (622)
T 3g06_A 288 TVNLEGNP 295 (622)
T ss_dssp EEECCSCC
T ss_pred EEEecCCC
Confidence 88888765
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.82 E-value=8.7e-05 Score=58.77 Aligned_cols=85 Identities=14% Similarity=0.071 Sum_probs=49.4
Q ss_pred CCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCE
Q 021719 148 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEV 226 (308)
Q Consensus 148 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~ 226 (308)
++|+.|+++++.+....-..+ ..+++|+.|+++++ ++.- .......+++|++|+|+++.++.-. ...+..+++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~ 109 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVF-DHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHLKSIP-RGAFDNLKSLTH 109 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCSE
T ss_pred CCCcEEEeCCCCccccCHHHh-cCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCccceeC-HHHhccccCCCE
Confidence 567777777765432111111 24667777777665 2210 0112246788889988887776211 123456888999
Q ss_pred EecccCCCc
Q 021719 227 LNISHCLLI 235 (308)
Q Consensus 227 L~l~~C~~i 235 (308)
|++++..-.
T Consensus 110 L~L~~N~~~ 118 (174)
T 2r9u_A 110 IYLYNNPWD 118 (174)
T ss_dssp EECCSSCBC
T ss_pred EEeCCCCcc
Confidence 999877543
No 140
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=96.81 E-value=0.0001 Score=64.44 Aligned_cols=130 Identities=19% Similarity=0.119 Sum_probs=74.4
Q ss_pred CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCC
Q 021719 96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF 175 (308)
Q Consensus 96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L 175 (308)
..++.+.+..+... .- .......+++|++|+++++ .++.. ....+..+++|++|+++++.+..-. . ...++|
T Consensus 54 ~~l~~L~l~~n~i~-~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~-~---~~~~~L 125 (332)
T 2ft3_A 54 PDTTLLDLQNNDIS-EL-RKDDFKGLQHLYALVLVNN-KISKI-HEKAFSPLRKLQKLYISKNHLVEIP-P---NLPSSL 125 (332)
T ss_dssp TTCCEEECCSSCCC-EE-CTTTTTTCTTCCEEECCSS-CCCEE-CGGGSTTCTTCCEEECCSSCCCSCC-S---SCCTTC
T ss_pred CCCeEEECCCCcCC-cc-CHhHhhCCCCCcEEECCCC-ccCcc-CHhHhhCcCCCCEEECCCCcCCccC-c---cccccC
Confidence 46777777654321 10 0011235788888888876 33321 1233567888888888888554100 0 112688
Q ss_pred CeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHH-HHHHcCCCCCEEecccCCCc
Q 021719 176 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALI-LILDGLQNLEVLNISHCLLI 235 (308)
Q Consensus 176 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~-~l~~~~p~L~~L~l~~C~~i 235 (308)
++|+++++ +..-. ......+++|++|+++++.++..++. ..+..+ +|++|+++++...
T Consensus 126 ~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 126 VELRIHDNRIRKVP-KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CEEECCSSCCCCCC-SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CEEECCCCccCccC-HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 88888876 32111 11234788899999988877643221 112223 8888888887643
No 141
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=96.77 E-value=2.5e-05 Score=65.03 Aligned_cols=132 Identities=9% Similarity=0.047 Sum_probs=79.5
Q ss_pred CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCC-CCCChHHHHHHHHcCCC
Q 021719 96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPS-IANPPYLMEEIAQNCRN 174 (308)
Q Consensus 96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~l~~l~~~~~~ 174 (308)
..++.+.+..+.... .-......+++|+.|+++++..++.-. ...+..+++|++|++++ +.+..-.... ...+++
T Consensus 31 ~~l~~L~l~~n~l~~--i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~-f~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKLIETHLRT--IPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDA-LKELPL 106 (239)
T ss_dssp TTCCEEEEESCCCSE--ECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTS-EECCTT
T ss_pred CcccEEEEeCCcceE--ECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHH-hCCCCC
Confidence 467777776543211 000112357899999999874343210 11346788999999987 6554211111 225789
Q ss_pred CCeeEecCC-CCHHHHHHHHhcCCCCc---EEEeeCC-CCCHHHHHHHHHcCCCCC-EEecccCCCc
Q 021719 175 FRELKIMGP-FDLLFASTLNMYLPKLK---VLSLRCT-TLNRDALILILDGLQNLE-VLNISHCLLI 235 (308)
Q Consensus 175 L~~L~l~~~-~~~~~~~~l~~~~p~L~---~L~L~~~-~it~~~l~~l~~~~p~L~-~L~l~~C~~i 235 (308)
|++|+++++ ++. +.. ...+++|+ +|+++++ .++.-.- ..+..+++|+ +|+++++...
T Consensus 107 L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 107 LKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp CCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCC
T ss_pred CCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCc
Confidence 999999875 322 111 34677777 9999987 6653211 1245688999 9999887543
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.63 E-value=0.00015 Score=57.18 Aligned_cols=84 Identities=14% Similarity=0.067 Sum_probs=48.4
Q ss_pred CCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCE
Q 021719 148 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEV 226 (308)
Q Consensus 148 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~ 226 (308)
++|+.|+++++.++.-.-..+. .+++|++|+++++ ++.- .......+++|++|+|+++.++.-. ...+..+++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~ 106 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFD-RLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQLKSIP-RGAFDNLKSLTH 106 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred CCCcEEEcCCCcCCccChhhhc-CcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCccCEeC-HHHhcCCCCCCE
Confidence 5677777777654322111122 3667777777765 2210 0112246788888888877765311 123456788888
Q ss_pred EecccCCC
Q 021719 227 LNISHCLL 234 (308)
Q Consensus 227 L~l~~C~~ 234 (308)
|++++..-
T Consensus 107 L~L~~N~~ 114 (170)
T 3g39_A 107 IWLLNNPW 114 (170)
T ss_dssp EECCSSCB
T ss_pred EEeCCCCC
Confidence 88887653
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.59 E-value=0.00017 Score=56.95 Aligned_cols=86 Identities=17% Similarity=0.108 Sum_probs=59.0
Q ss_pred CCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCC
Q 021719 147 WRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLE 225 (308)
Q Consensus 147 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~ 225 (308)
.++|++|+++++.+...... ....+++|++|+++++ ++.-. ......+++|+.|+++++.++... ...+..+++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~ 103 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHG-VFDKLTQLTKLSLSQNQIQSLP-DGVFDKLTKLTILYLHENKLQSLP-NGVFDKLTQLK 103 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred CCCCcEEEeCCCcccEeCHH-HhcCcccccEEECCCCcceEeC-hhHccCCCccCEEECCCCCccccC-HHHhhCCcccC
Confidence 47999999999866522111 1235799999999886 33111 112347899999999988877321 12345689999
Q ss_pred EEecccCCCc
Q 021719 226 VLNISHCLLI 235 (308)
Q Consensus 226 ~L~l~~C~~i 235 (308)
+|+++++...
T Consensus 104 ~L~l~~N~l~ 113 (177)
T 2o6r_A 104 ELALDTNQLK 113 (177)
T ss_dssp EEECCSSCCS
T ss_pred EEECcCCcce
Confidence 9999988543
No 144
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=96.57 E-value=3.2e-05 Score=64.43 Aligned_cols=134 Identities=8% Similarity=0.027 Sum_probs=76.2
Q ss_pred CCCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCC
Q 021719 95 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 174 (308)
Q Consensus 95 ~~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 174 (308)
...++.+.+..+..++.- -......+++|++|+++++..++.-. ...+..+++|++|+++++.+.. +.. ...+++
T Consensus 54 l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~ 128 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLLKFLGIFNTGLKM--FPD-LTKVYS 128 (239)
T ss_dssp CTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTCCEEEEEEECCCS--CCC-CTTCCB
T ss_pred CCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCCCEEeCCCCCCcc--ccc-cccccc
Confidence 456777777665422110 00012357889999998633443211 1234578899999998885542 112 234677
Q ss_pred CC---eeEecCC--CCHHHHHHHHhcCCCCc-EEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 175 FR---ELKIMGP--FDLLFASTLNMYLPKLK-VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 175 L~---~L~l~~~--~~~~~~~~l~~~~p~L~-~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
|+ .|+++++ ++.-. ......+++|+ .|+++++.++.-.- ..+.. ++|+.|+++++..++
T Consensus 129 L~~L~~L~l~~N~~l~~i~-~~~~~~l~~L~~~L~l~~n~l~~i~~-~~~~~-~~L~~L~L~~n~~l~ 193 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIP-VNAFQGLCNETLTLKLYNNGFTSVQG-YAFNG-TKLDAVYLNKNKYLT 193 (239)
T ss_dssp CCSEEEEEEESCTTCCEEC-TTTTTTTBSSEEEEECCSCCCCEECT-TTTTT-CEEEEEECTTCTTCC
T ss_pred cccccEEECCCCcchhhcC-cccccchhcceeEEEcCCCCCcccCH-hhcCC-CCCCEEEcCCCCCcc
Confidence 77 8888765 22100 01124678888 88888777652111 12222 788888888885443
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.50 E-value=0.00031 Score=56.54 Aligned_cols=86 Identities=17% Similarity=0.143 Sum_probs=59.9
Q ss_pred CCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCC
Q 021719 147 WRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLE 225 (308)
Q Consensus 147 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~ 225 (308)
.++|++|+++++.++.-. .. ...+++|+.|+++++ ++.-.. .....+++|++|+|+++.++...- ..+..+++|+
T Consensus 30 ~~~l~~L~L~~n~i~~ip-~~-~~~l~~L~~L~Ls~N~i~~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~ 105 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTLVP-KE-LSNYKHLTLIDLSNNRISTLSN-QSFSNMTQLLTLILSYNRLRCIPP-RTFDGLKSLR 105 (193)
T ss_dssp CTTCCEEECCSSCCCSCC-GG-GGGCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCC
T ss_pred CCCCCEEECCCCcCchhH-HH-hhcccCCCEEECCCCcCCEeCH-hHccCCCCCCEEECCCCccCEeCH-HHhCCCCCCC
Confidence 368999999999665211 22 346899999999986 332111 123478999999999888764321 2345789999
Q ss_pred EEecccCCCcC
Q 021719 226 VLNISHCLLID 236 (308)
Q Consensus 226 ~L~l~~C~~i~ 236 (308)
.|+++++...+
T Consensus 106 ~L~L~~N~l~~ 116 (193)
T 2wfh_A 106 LLSLHGNDISV 116 (193)
T ss_dssp EEECCSSCCCB
T ss_pred EEECCCCCCCe
Confidence 99999986444
No 146
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.47 E-value=0.00094 Score=62.97 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=24.8
Q ss_pred cCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCC
Q 021719 146 MWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLN 210 (308)
Q Consensus 146 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it 210 (308)
.+++|+.|++++|.++. +. ..+++|+.|+++++ ++. +..+ .++|+.|+|++|.++
T Consensus 138 ~l~~L~~L~Ls~N~l~~--lp---~~l~~L~~L~Ls~N~L~~--lp~l---~~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 138 LPALLEYINADNNQLTM--LP---ELPTSLEVLSVRNNQLTF--LPEL---PESLEALDVSTNLLE 193 (571)
T ss_dssp CCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCS
T ss_pred cCccccEEeCCCCccCc--CC---CcCCCcCEEECCCCCCCC--cchh---hCCCCEEECcCCCCC
Confidence 34555555555554331 10 03455555555554 221 0001 156666666655554
No 147
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.38 E-value=0.00017 Score=57.88 Aligned_cols=87 Identities=10% Similarity=0.033 Sum_probs=59.7
Q ss_pred CCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCE
Q 021719 148 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEV 226 (308)
Q Consensus 148 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~ 226 (308)
++|++|+++++.++......+...+++|++|+++++ ++.... .....+++|++|+|+++.++...- ..+..+++|++
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~ 106 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-NAFEGASHIQELQLGENKIKEISN-KMFLGLHQLKT 106 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSCCCCEECS-SSSTTCTTCCE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH-hHcCCcccCCEEECCCCcCCccCH-HHhcCCCCCCE
Confidence 489999999996653222112346899999999987 332111 123478999999999988864321 22456899999
Q ss_pred EecccCCCcC
Q 021719 227 LNISHCLLID 236 (308)
Q Consensus 227 L~l~~C~~i~ 236 (308)
|+++++...+
T Consensus 107 L~L~~N~l~~ 116 (192)
T 1w8a_A 107 LNLYDNQISC 116 (192)
T ss_dssp EECCSSCCCE
T ss_pred EECCCCcCCe
Confidence 9999986443
No 148
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.31 E-value=0.00074 Score=63.71 Aligned_cols=102 Identities=9% Similarity=0.004 Sum_probs=64.2
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCH--HHHHHHHhcC
Q 021719 120 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDL--LFASTLNMYL 196 (308)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~--~~~~~l~~~~ 196 (308)
.+++|+.|+|+++. ++. +. ..+++|+.|++++|.++. +..+ .++|+.|+++++ ++. .....+....
T Consensus 138 ~l~~L~~L~Ls~N~-l~~--lp---~~l~~L~~L~Ls~N~L~~--lp~l---~~~L~~L~Ls~N~L~~lp~~~~~L~~~~ 206 (571)
T 3cvr_A 138 LPALLEYINADNNQ-LTM--LP---ELPTSLEVLSVRNNQLTF--LPEL---PESLEALDVSTNLLESLPAVPVRNHHSE 206 (571)
T ss_dssp CCTTCCEEECCSSC-CSC--CC---CCCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSSCCCCC-------
T ss_pred cCccccEEeCCCCc-cCc--CC---CcCCCcCEEECCCCCCCC--cchh---hCCCCEEECcCCCCCchhhHHHhhhccc
Confidence 46788889888763 332 11 157899999999996653 1112 289999999886 331 0000222233
Q ss_pred CCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCC
Q 021719 197 PKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 234 (308)
Q Consensus 197 p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~ 234 (308)
+.|+.|+|++|.++. +..-+..+++|+.|+++++..
T Consensus 207 ~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 207 ETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp -CCEEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSC
T ss_pred ccceEEecCCCccee--cCHHHhcCCCCCEEEeeCCcC
Confidence 444999999888873 333334589999999998764
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.29 E-value=0.00044 Score=60.41 Aligned_cols=111 Identities=10% Similarity=0.073 Sum_probs=51.4
Q ss_pred CHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCC--CCChHHHHHHHHcCCCCC-eeEecCCCCH
Q 021719 110 SDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI--ANPPYLMEEIAQNCRNFR-ELKIMGPFDL 186 (308)
Q Consensus 110 ~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~l~~l~~~~~~L~-~L~l~~~~~~ 186 (308)
.......+...|++|+.|+|+.+. ++.-+ ...+..|++|++|+++.+ .+.+.++ ..|++|+ .+.+...+..
T Consensus 214 ~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~-~~aF~~~~~L~~l~l~~ni~~I~~~aF----~~~~~L~~~l~l~~~l~~ 287 (329)
T 3sb4_A 214 DNADFKLIRDYMPNLVSLDISKTN-ATTIP-DFTFAQKKYLLKIKLPHNLKTIGQRVF----SNCGRLAGTLELPASVTA 287 (329)
T ss_dssp CHHHHHHHHHHCTTCCEEECTTBC-CCEEC-TTTTTTCTTCCEEECCTTCCEECTTTT----TTCTTCCEEEEECTTCCE
T ss_pred cHHHHHHHHHhcCCCeEEECCCCC-cceec-HhhhhCCCCCCEEECCcccceehHHHh----hCChhccEEEEEcccceE
Confidence 344444555556666666666531 11100 123445666666666654 1222222 2466666 6666544211
Q ss_pred HHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEe
Q 021719 187 LFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLN 228 (308)
Q Consensus 187 ~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~ 228 (308)
-+.. ...+|++|+.|++..+.++.-+- ..+.+|++|+.|.
T Consensus 288 I~~~-aF~~c~~L~~l~l~~n~i~~I~~-~aF~~~~~L~~ly 327 (329)
T 3sb4_A 288 IEFG-AFMGCDNLRYVLATGDKITTLGD-ELFGNGVPSKLIY 327 (329)
T ss_dssp ECTT-TTTTCTTEEEEEECSSCCCEECT-TTTCTTCCCCEEE
T ss_pred Echh-hhhCCccCCEEEeCCCccCccch-hhhcCCcchhhhc
Confidence 0001 12356666666665444432111 1234566666553
No 150
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.23 E-value=0.00052 Score=66.76 Aligned_cols=89 Identities=15% Similarity=0.086 Sum_probs=61.7
Q ss_pred HHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHH
Q 021719 141 CKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILD 219 (308)
Q Consensus 141 ~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~ 219 (308)
...+..++.|+.|+|+++.+.. .-..+. .+++|++|+|+++ ++ . +..-...+++|+.|+|++|.++ .+..-+.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~-~l~~L~~L~Ls~N~l~-~-lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~ 290 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFN-ISANIF-KYDFLTRLYLNGNSLT-E-LPAEIKNLSNLRVLDLSHNRLT--SLPAELG 290 (727)
T ss_dssp -----CCCCCCEEECTTSCCSC-CCGGGG-GCCSCSCCBCTTSCCS-C-CCGGGGGGTTCCEEECTTSCCS--SCCSSGG
T ss_pred hhhhccCCCCcEEECCCCCCCC-CChhhc-CCCCCCEEEeeCCcCc-c-cChhhhCCCCCCEEeCcCCcCC--ccChhhc
Confidence 3445678999999999996541 111122 5899999999987 44 1 1112358999999999999887 3444456
Q ss_pred cCCCCCEEecccCCCc
Q 021719 220 GLQNLEVLNISHCLLI 235 (308)
Q Consensus 220 ~~p~L~~L~l~~C~~i 235 (308)
.+++|++|+|+++...
T Consensus 291 ~l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT 306 (727)
T ss_dssp GGTTCSEEECCSSCCC
T ss_pred CCCCCCEEECCCCCCC
Confidence 7899999999998543
No 151
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.16 E-value=0.0033 Score=59.91 Aligned_cols=93 Identities=20% Similarity=0.170 Sum_probs=51.8
Q ss_pred CCccEEEccCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCC
Q 021719 96 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF 175 (308)
Q Consensus 96 ~~l~~l~l~~~~~~~d~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L 175 (308)
..++.+.+..+... .+....++|+.|+|+++. ++. + -..+++|++|++++|.++.- ....++|
T Consensus 61 ~~L~~L~L~~N~l~------~lp~~l~~L~~L~Ls~N~-l~~--l---p~~l~~L~~L~Ls~N~l~~l-----~~~l~~L 123 (622)
T 3g06_A 61 AHITTLVIPDNNLT------SLPALPPELRTLEVSGNQ-LTS--L---PVLPPGLLELSIFSNPLTHL-----PALPSGL 123 (622)
T ss_dssp TTCSEEEECSCCCS------CCCCCCTTCCEEEECSCC-CSC--C---CCCCTTCCEEEECSCCCCCC-----CCCCTTC
T ss_pred CCCcEEEecCCCCC------CCCCcCCCCCEEEcCCCc-CCc--C---CCCCCCCCEEECcCCcCCCC-----CCCCCCc
Confidence 45666666654321 111145677777777763 321 1 11567777777777754320 1135677
Q ss_pred CeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCC
Q 021719 176 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLN 210 (308)
Q Consensus 176 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it 210 (308)
+.|+++++ ++. +...+++|++|+++++.++
T Consensus 124 ~~L~L~~N~l~~-----lp~~l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 124 CKLWIFGNQLTS-----LPVLPPGLQELSVSDNQLA 154 (622)
T ss_dssp CEEECCSSCCSC-----CCCCCTTCCEEECCSSCCS
T ss_pred CEEECCCCCCCc-----CCCCCCCCCEEECcCCcCC
Confidence 77777665 221 1223577777777766654
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.06 E-value=0.00082 Score=52.78 Aligned_cols=85 Identities=11% Similarity=0.005 Sum_probs=56.2
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCc
Q 021719 122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK 200 (308)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~ 200 (308)
++|+.|+|++.. ++.. ....+..+++|+.|+++++.++.-.- .....+++|+.|+++++ +..-. ......+++|+
T Consensus 30 ~~l~~L~L~~N~-i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~ 105 (170)
T 3g39_A 30 TTTQVLYLYDNQ-ITKL-EPGVFDRLTQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLNDNQLKSIP-RGAFDNLKSLT 105 (170)
T ss_dssp TTCSEEECCSSC-CCCC-CTTTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred CCCcEEEcCCCc-CCcc-ChhhhcCcccCCEEECCCCCcCccCh-hhccCCCCCCEEECCCCccCEeC-HHHhcCCCCCC
Confidence 678999998763 3221 02235678999999999996652211 11235789999999886 32110 11234789999
Q ss_pred EEEeeCCCCC
Q 021719 201 VLSLRCTTLN 210 (308)
Q Consensus 201 ~L~L~~~~it 210 (308)
+|+|++|.++
T Consensus 106 ~L~L~~N~~~ 115 (170)
T 3g39_A 106 HIWLLNNPWD 115 (170)
T ss_dssp EEECCSSCBC
T ss_pred EEEeCCCCCC
Confidence 9999988765
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.03 E-value=0.00086 Score=52.92 Aligned_cols=85 Identities=13% Similarity=0.066 Sum_probs=56.6
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCc
Q 021719 122 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK 200 (308)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~ 200 (308)
++|+.|+|++.. ++.. ....+..+++|+.|+++++.++.-. ..+...+++|+.|+++++ +..- .......+++|+
T Consensus 33 ~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~ 108 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKL-EPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLT 108 (174)
T ss_dssp TTCSEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCS
T ss_pred CCCcEEEeCCCC-cccc-CHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCcccee-CHHHhccccCCC
Confidence 689999999763 3211 1234567899999999999665311 112235789999999886 3311 112234789999
Q ss_pred EEEeeCCCCC
Q 021719 201 VLSLRCTTLN 210 (308)
Q Consensus 201 ~L~L~~~~it 210 (308)
+|+|++|.++
T Consensus 109 ~L~L~~N~~~ 118 (174)
T 2r9u_A 109 HIYLYNNPWD 118 (174)
T ss_dssp EEECCSSCBC
T ss_pred EEEeCCCCcc
Confidence 9999988765
No 154
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=95.85 E-value=0.002 Score=58.96 Aligned_cols=13 Identities=15% Similarity=0.143 Sum_probs=6.0
Q ss_pred cCCCCCEEecccC
Q 021719 220 GLQNLEVLNISHC 232 (308)
Q Consensus 220 ~~p~L~~L~l~~C 232 (308)
.+++|++|+++++
T Consensus 235 ~l~~L~~L~l~~N 247 (454)
T 1jl5_A 235 NLPFLTTIYADNN 247 (454)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC
Confidence 3444444444444
No 155
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=95.67 E-value=0.0048 Score=56.43 Aligned_cols=76 Identities=14% Similarity=0.068 Sum_probs=35.8
Q ss_pred hcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCC
Q 021719 145 RMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQN 223 (308)
Q Consensus 145 ~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~ 223 (308)
..+++|++|+++++.+.. +....++|+.|+++++ +.. +.. ...+++|++|+++++.++. + -...++
T Consensus 192 ~~l~~L~~L~l~~N~l~~-----l~~~~~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~--l---~~~~~~ 258 (454)
T 1jl5_A 192 QNLPFLTAIYADNNSLKK-----LPDLPLSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNLLKT--L---PDLPPS 258 (454)
T ss_dssp TTCTTCCEEECCSSCCSS-----CCCCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSS--C---CSCCTT
T ss_pred cCCCCCCEEECCCCcCCc-----CCCCcCcccEEECcCCcCCc--ccc-cCCCCCCCEEECCCCcCCc--c---cccccc
Confidence 344555555555553321 0011235555555544 210 111 2356777777777666542 1 112356
Q ss_pred CCEEecccCC
Q 021719 224 LEVLNISHCL 233 (308)
Q Consensus 224 L~~L~l~~C~ 233 (308)
|++|++++|.
T Consensus 259 L~~L~l~~N~ 268 (454)
T 1jl5_A 259 LEALNVRDNY 268 (454)
T ss_dssp CCEEECCSSC
T ss_pred cCEEECCCCc
Confidence 6666666554
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.35 E-value=0.0014 Score=57.44 Aligned_cols=61 Identities=11% Similarity=0.096 Sum_probs=27.1
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCC
Q 021719 121 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP 183 (308)
Q Consensus 121 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 183 (308)
.++|+.|+|++...++.. ....+..+++|+.|+|+++.++...-..+ ..+++|+.|+|+++
T Consensus 30 ~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAF-HFTPRLSRLNLSFN 90 (347)
T ss_dssp CSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGG-GSCSCCCEEECCSS
T ss_pred CCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHh-cCCcCCCEEeCCCC
Confidence 445666666542223211 01123455666666666664432111111 23555556655544
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.21 E-value=0.0053 Score=53.71 Aligned_cols=88 Identities=18% Similarity=0.241 Sum_probs=52.3
Q ss_pred HhcCCCCCEEEeCC-CCCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcC
Q 021719 144 IRMWRDLESLTMPS-IANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGL 221 (308)
Q Consensus 144 ~~~~~~L~~L~l~~-~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~ 221 (308)
+..+++|++|+|++ +.+..-.-..+ ..+++|+.|+|+++ +..-.. .....+++|++|+|++|.++.-. ..++...
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~ 103 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSFNALESLS-WKTVQGL 103 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCSSCCSCCC-STTTCSC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHh-ccccCCCEEECCCCccceeCH-HHhcCCcCCCEEeCCCCccceeC-HHHcccC
Confidence 56677888888885 65542211122 24788888888876 322111 12347888888888887775211 1122223
Q ss_pred CCCCEEecccCCCc
Q 021719 222 QNLEVLNISHCLLI 235 (308)
Q Consensus 222 p~L~~L~l~~C~~i 235 (308)
+ |+.|++.+..-.
T Consensus 104 ~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 104 S-LQELVLSGNPLH 116 (347)
T ss_dssp C-CCEEECCSSCCC
T ss_pred C-ceEEEeeCCCcc
Confidence 3 888888876543
No 158
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=93.52 E-value=0.0071 Score=52.60 Aligned_cols=103 Identities=11% Similarity=0.056 Sum_probs=58.5
Q ss_pred CcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEecCCCCHHHHHHHHhcCCCCc-EE
Q 021719 124 LKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLK-VL 202 (308)
Q Consensus 124 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~p~L~-~L 202 (308)
+..+.+.+ .+....+..+...|++|++|+++.+.+..-.-.+ ...|++|+.|.+...+..-+. ....+|++|+ .|
T Consensus 204 ~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~a-F~~~~~L~~l~l~~ni~~I~~-~aF~~~~~L~~~l 279 (329)
T 3sb4_A 204 INFLTIEG--KLDNADFKLIRDYMPNLVSLDISKTNATTIPDFT-FAQKKYLLKIKLPHNLKTIGQ-RVFSNCGRLAGTL 279 (329)
T ss_dssp CSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTT-TTTCTTCCEEECCTTCCEECT-TTTTTCTTCCEEE
T ss_pred cceEEEee--eecHHHHHHHHHhcCCCeEEECCCCCcceecHhh-hhCCCCCCEEECCcccceehH-HHhhCChhccEEE
Confidence 34444443 2444455555556888999988876443111111 235888888888765321111 1124788888 88
Q ss_pred EeeCCCCCHHHHHHHHHcCCCCCEEecccC
Q 021719 203 SLRCTTLNRDALILILDGLQNLEVLNISHC 232 (308)
Q Consensus 203 ~L~~~~it~~~l~~l~~~~p~L~~L~l~~C 232 (308)
++.. .++.-+ ...+.+|++|+.|++.+.
T Consensus 280 ~l~~-~l~~I~-~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 280 ELPA-SVTAIE-FGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp EECT-TCCEEC-TTTTTTCTTEEEEEECSS
T ss_pred EEcc-cceEEc-hhhhhCCccCCEEEeCCC
Confidence 8874 322111 023467888998888643
No 159
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=88.41 E-value=0.005 Score=54.11 Aligned_cols=12 Identities=8% Similarity=-0.111 Sum_probs=6.9
Q ss_pred CCCCEEecccCC
Q 021719 222 QNLEVLNISHCL 233 (308)
Q Consensus 222 p~L~~L~l~~C~ 233 (308)
..|+.|+++++.
T Consensus 154 ~~l~~L~L~~N~ 165 (350)
T 4ay9_X 154 FESVILWLNKNG 165 (350)
T ss_dssp SSCEEEECCSSC
T ss_pred hhhhhhcccccc
Confidence 346666666554
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=86.61 E-value=0.16 Score=45.07 Aligned_cols=99 Identities=15% Similarity=0.233 Sum_probs=55.6
Q ss_pred hCCCCcEEEcCCCC-CCCHHHHHHHHhcCCCCCEEEeCCC--CCChHHHHHHHHcCCCCCeeEecCCCCHHHHHHHHhcC
Q 021719 120 RCPQLKRLVMPAWN-RIKKTGICKAIRMWRDLESLTMPSI--ANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYL 196 (308)
Q Consensus 120 ~~~~L~~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~ 196 (308)
.|.+|+.+.++... .+.. .....|++|+++.+... .+.+..+ ..|.+|+.+.|...++.-+-. ...+|
T Consensus 263 ~c~~L~~i~lp~~~~~I~~----~aF~~c~~L~~i~l~~~i~~I~~~aF----~~c~~L~~i~lp~~v~~I~~~-aF~~C 333 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGT----GAFMNCPALQDIEFSSRITELPESVF----AGCISLKSIDIPEGITQILDD-AFAGC 333 (394)
T ss_dssp TCSSCCEEECCTTCCEECT----TTTTTCTTCCEEECCTTCCEECTTTT----TTCTTCCEEECCTTCCEECTT-TTTTC
T ss_pred ecccccEEecccccceecC----cccccccccccccCCCcccccCceee----cCCCCcCEEEeCCcccEehHh-HhhCC
Confidence 46777777776431 1111 23456778888877643 2232222 257888888886542210001 12467
Q ss_pred CCCcEEEeeC--CCCCHHHHHHHHHcCCCCCEEeccc
Q 021719 197 PKLKVLSLRC--TTLNRDALILILDGLQNLEVLNISH 231 (308)
Q Consensus 197 p~L~~L~L~~--~~it~~~l~~l~~~~p~L~~L~l~~ 231 (308)
.+|+.+.|.. ..|.+. .+.+|++|+.+++.+
T Consensus 334 ~~L~~i~ip~sv~~I~~~----aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 334 EQLERIAIPSSVTKIPES----AFSNCTALNNIEYSG 366 (394)
T ss_dssp TTCCEEEECTTCCBCCGG----GGTTCTTCCEEEESS
T ss_pred CCCCEEEECcccCEEhHh----HhhCCCCCCEEEECC
Confidence 8888888852 224333 245688888887764
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=86.33 E-value=0.21 Score=44.27 Aligned_cols=99 Identities=12% Similarity=0.173 Sum_probs=60.3
Q ss_pred hhCCCCcEEEcCCC-CCCCHHHHHHHHhcCCCCCEEEeCCC--CCChHHHHHHHHcCCCCCeeEecCCCCHHHHHHHHhc
Q 021719 119 ERCPQLKRLVMPAW-NRIKKTGICKAIRMWRDLESLTMPSI--ANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMY 195 (308)
Q Consensus 119 ~~~~~L~~L~L~~~-~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~ 195 (308)
..|++|+.+.++.. ..+.+ ..+..|.+|+++++... .+.+.++ ..|.+|+++.|...++.-+-.+ ..+
T Consensus 285 ~~c~~L~~i~l~~~i~~I~~----~aF~~c~~L~~i~lp~~v~~I~~~aF----~~C~~L~~i~ip~sv~~I~~~a-F~~ 355 (394)
T 4gt6_A 285 MNCPALQDIEFSSRITELPE----SVFAGCISLKSIDIPEGITQILDDAF----AGCEQLERIAIPSSVTKIPESA-FSN 355 (394)
T ss_dssp TTCTTCCEEECCTTCCEECT----TTTTTCTTCCEEECCTTCCEECTTTT----TTCTTCCEEEECTTCCBCCGGG-GTT
T ss_pred ccccccccccCCCcccccCc----eeecCCCCcCEEEeCCcccEehHhHh----hCCCCCCEEEECcccCEEhHhH-hhC
Confidence 36899999999753 12222 24568999999999765 2333333 3699999999976533211112 358
Q ss_pred CCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecc
Q 021719 196 LPKLKVLSLRCTTLNRDALILILDGLQNLEVLNIS 230 (308)
Q Consensus 196 ~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~ 230 (308)
|++|+.+++.++.. .. .-+..|.+|+.+.+.
T Consensus 356 C~~L~~i~~~~~~~---~~-~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 356 CTALNNIEYSGSRS---QW-NAISTDSGLQNLPVA 386 (394)
T ss_dssp CTTCCEEEESSCHH---HH-HTCBCCCCC------
T ss_pred CCCCCEEEECCcee---eh-hhhhccCCCCEEEeC
Confidence 99999999987532 12 223458888888775
No 162
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=85.62 E-value=0.035 Score=48.63 Aligned_cols=111 Identities=15% Similarity=0.128 Sum_probs=63.8
Q ss_pred CCCcEEEcCCCCCCCHHHHH-HHHhcCCCCCEEEeCCCCCChHHHHHHHHcCCCCCeeEe-cCC-CCHHHHHHHHhcCCC
Q 021719 122 PQLKRLVMPAWNRIKKTGIC-KAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKI-MGP-FDLLFASTLNMYLPK 198 (308)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l-~~~-~~~~~~~~l~~~~p~ 198 (308)
+++++|+|++. .++. +. ..+..+++|++|+|+++.+....-......+++|+++.+ .++ +..-. ......+++
T Consensus 30 ~~l~~L~Ls~N-~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~ 105 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPN 105 (350)
T ss_dssp TTCSEEEEESC-CCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTT
T ss_pred CCCCEEEccCC-cCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-chhhhhccc
Confidence 57999999976 3432 11 235678999999999986432111111224667666444 322 22100 012347899
Q ss_pred CcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcCC
Q 021719 199 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV 237 (308)
Q Consensus 199 L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~~ 237 (308)
|++|+++++.++...- .......++..|++.++..++.
T Consensus 106 L~~L~l~~n~l~~~~~-~~~~~~~~l~~l~l~~~~~i~~ 143 (350)
T 4ay9_X 106 LQYLLISNTGIKHLPD-VHKIHSLQKVLLDIQDNINIHT 143 (350)
T ss_dssp CCEEEEEEECCSSCCC-CTTCCBSSCEEEEEESCTTCCE
T ss_pred cccccccccccccCCc-hhhcccchhhhhhhcccccccc
Confidence 9999999777642110 0112345677888887766653
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=77.32 E-value=0.38 Score=42.97 Aligned_cols=38 Identities=26% Similarity=0.395 Sum_probs=23.0
Q ss_pred hcCCCCcEEEeeCCCCCHHHH----HHHHHcCCCCCEEeccc
Q 021719 194 MYLPKLKVLSLRCTTLNRDAL----ILILDGLQNLEVLNISH 231 (308)
Q Consensus 194 ~~~p~L~~L~L~~~~it~~~l----~~l~~~~p~L~~L~l~~ 231 (308)
..|++|+.+.+..+.+....+ ...+.+|++|+.+++..
T Consensus 268 ~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 268 YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 467888888887544320000 12345688888888863
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=73.94 E-value=0.66 Score=41.39 Aligned_cols=107 Identities=10% Similarity=0.118 Sum_probs=65.0
Q ss_pred CCCcEEEcCCC-CCCCHHHHHHHHhcCCCCCEEEeCCCCCChH----HHHHHHHcCCCCCeeEecCCCCHHHHHHHHhcC
Q 021719 122 PQLKRLVMPAW-NRIKKTGICKAIRMWRDLESLTMPSIANPPY----LMEEIAQNCRNFRELKIMGPFDLLFASTLNMYL 196 (308)
Q Consensus 122 ~~L~~L~L~~~-~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~----~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~ 196 (308)
.+|+.+.++.. ..+.. ..+..|++|+++++..+..... .-......|++|+.+.+...+..-+.. ...+|
T Consensus 248 ~~L~~i~lp~~i~~I~~----~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~-aF~~c 322 (401)
T 4fdw_A 248 SGITTVKLPNGVTNIAS----RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQG-LLGGN 322 (401)
T ss_dssp CCCSEEEEETTCCEECT----TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTT-TTTTC
T ss_pred CCccEEEeCCCccEECh----hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhh-hhcCC
Confidence 58999998653 12222 3456899999999987632200 001112369999999998653211111 23478
Q ss_pred CCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecccCCCcC
Q 021719 197 PKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 236 (308)
Q Consensus 197 p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~~C~~i~ 236 (308)
++|+.+.|..+ ++.-+- ..+.+| +|+.|.+.+..-.+
T Consensus 323 ~~L~~l~lp~~-l~~I~~-~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 323 RKVTQLTIPAN-VTQINF-SAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp CSCCEEEECTT-CCEECT-TSSSSS-CCCEEEECCSSCCB
T ss_pred CCccEEEECcc-ccEEcH-HhCCCC-CCCEEEEcCCCCcc
Confidence 99999999632 221111 124578 99999998875443
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=63.39 E-value=0.49 Score=41.92 Aligned_cols=12 Identities=25% Similarity=0.482 Sum_probs=6.4
Q ss_pred HcCCCCCEEecc
Q 021719 219 DGLQNLEVLNIS 230 (308)
Q Consensus 219 ~~~p~L~~L~l~ 230 (308)
.+|++|+.+++.
T Consensus 363 ~~C~~L~~i~lp 374 (394)
T 4fs7_A 363 QGCINLKKVELP 374 (394)
T ss_dssp TTCTTCCEEEEE
T ss_pred hCCCCCCEEEEC
Confidence 345555555553
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=58.41 E-value=1.2 Score=39.25 Aligned_cols=96 Identities=14% Similarity=0.154 Sum_probs=53.9
Q ss_pred hCCCCcEEEcCCC-CCCCHHHHHHHHhcCCCCCEEEeCCC--CCChHHHHHHHHcCCCCCeeEecCCCCHHHHHHHHhcC
Q 021719 120 RCPQLKRLVMPAW-NRIKKTGICKAIRMWRDLESLTMPSI--ANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYL 196 (308)
Q Consensus 120 ~~~~L~~L~L~~~-~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~ 196 (308)
.|.+|+.+.+... ..+.+ ..+..|.+|+++++... .+.+.++ ..|.+|+.+.+...+..-+.. ...+|
T Consensus 295 ~~~~L~~i~l~~~i~~I~~----~aF~~c~~L~~i~lp~~v~~I~~~aF----~~c~~L~~i~lp~~l~~I~~~-aF~~C 365 (394)
T 4fs7_A 295 GCSSLTEVKLLDSVKFIGE----EAFESCTSLVSIDLPYLVEEIGKRSF----RGCTSLSNINFPLSLRKIGAN-AFQGC 365 (394)
T ss_dssp TCTTCCEEEECTTCCEECT----TTTTTCTTCCEECCCTTCCEECTTTT----TTCTTCCEECCCTTCCEECTT-TBTTC
T ss_pred ccccccccccccccceech----hhhcCCCCCCEEEeCCcccEEhHHhc----cCCCCCCEEEECccccEehHH-HhhCC
Confidence 4677777777642 12222 23457888888888654 2333222 258889988887653211111 13478
Q ss_pred CCCcEEEeeCCCCCHHHHHHHHHcCCCCCEE
Q 021719 197 PKLKVLSLRCTTLNRDALILILDGLQNLEVL 227 (308)
Q Consensus 197 p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L 227 (308)
++|+.+++..+ ++.. ..-+..|++|+.+
T Consensus 366 ~~L~~i~lp~~-~~~~--~~~F~~c~~L~~I 393 (394)
T 4fs7_A 366 INLKKVELPKR-LEQY--RYDFEDTTKFKWI 393 (394)
T ss_dssp TTCCEEEEEGG-GGGG--GGGBCTTCEEEEE
T ss_pred CCCCEEEECCC-CEEh--hheecCCCCCcEE
Confidence 99999988632 1111 1124557777664
No 167
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=54.13 E-value=4.4 Score=25.86 Aligned_cols=22 Identities=23% Similarity=0.638 Sum_probs=18.7
Q ss_pred cccccccccccCccCcccchhh
Q 021719 266 TCMEDSCIMCQRTKNDEGIMRW 287 (308)
Q Consensus 266 ~c~~~~c~~~~~~~~~~~~~~~ 287 (308)
.|+-+-|.+|.+.|+++|+.+-
T Consensus 27 nCs~NiCPYC~nRls~eGl~RH 48 (77)
T 2l7x_A 27 NCSYNICPYCASRLTSDGLARH 48 (77)
T ss_dssp HHTTTCCTTTCCCCCTTTHHHH
T ss_pred CCCcccChhhhccCCccchhhh
Confidence 5667789999999999998764
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=48.68 E-value=2.2 Score=37.22 Aligned_cols=58 Identities=10% Similarity=0.145 Sum_probs=25.5
Q ss_pred cCCCCCeeEecCCCCHHHHHHHHhcCCCCcEEEeeCCCCCHHHHHHHHHcCCCCCEEecc
Q 021719 171 NCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNIS 230 (308)
Q Consensus 171 ~~~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~p~L~~L~l~ 230 (308)
.|.+|+.+.+...+..-+. .....|++|+.+.+..+.++.-+- ..+.+|.+|+.+.|.
T Consensus 261 ~~~~l~~i~l~~~i~~i~~-~aF~~c~~L~~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 261 NCTALKTLNFYAKVKTVPY-LLCSGCSNLTKVVMDNSAIETLEP-RVFMDCVKLSSVTLP 318 (379)
T ss_dssp TCTTCCEEEECCCCSEECT-TTTTTCTTCCEEEECCTTCCEECT-TTTTTCTTCCEEECC
T ss_pred eeehhccccccccceeccc-cccccccccccccccccccceehh-hhhcCCCCCCEEEcC
Confidence 3555666665443211000 112356666666665433221000 123456666666663
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=45.51 E-value=1.6 Score=38.12 Aligned_cols=99 Identities=16% Similarity=0.224 Sum_probs=62.1
Q ss_pred hhCCCCcEEEcCCC-CCCCHHHHHHHHhcCCCCCEEEeCCC--CCChHHHHHHHHcCCCCCeeEecCC-CCHHHHHHHHh
Q 021719 119 ERCPQLKRLVMPAW-NRIKKTGICKAIRMWRDLESLTMPSI--ANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNM 194 (308)
Q Consensus 119 ~~~~~L~~L~L~~~-~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~ 194 (308)
..|.+|+.+.++.. ..+.+ .....|.+|+.+.+... .+.... ...|++|+.+.+... +..-+- ....
T Consensus 237 ~~~~~L~~i~lp~~v~~I~~----~aF~~~~~l~~i~l~~~i~~i~~~a----F~~c~~L~~i~l~~~~i~~I~~-~aF~ 307 (379)
T 4h09_A 237 YGMKALDEIAIPKNVTSIGS----FLLQNCTALKTLNFYAKVKTVPYLL----CSGCSNLTKVVMDNSAIETLEP-RVFM 307 (379)
T ss_dssp TTCSSCCEEEECTTCCEECT----TTTTTCTTCCEEEECCCCSEECTTT----TTTCTTCCEEEECCTTCCEECT-TTTT
T ss_pred cCCccceEEEcCCCccEeCc----cccceeehhccccccccceeccccc----cccccccccccccccccceehh-hhhc
Confidence 35788999998753 12221 23457889999998754 222222 236899999999754 321000 1234
Q ss_pred cCCCCcEEEeeCC--CCCHHHHHHHHHcCCCCCEEecc
Q 021719 195 YLPKLKVLSLRCT--TLNRDALILILDGLQNLEVLNIS 230 (308)
Q Consensus 195 ~~p~L~~L~L~~~--~it~~~l~~l~~~~p~L~~L~l~ 230 (308)
+|.+|+.+.|..+ .|.+. .+.+|++|+.+.+.
T Consensus 308 ~c~~L~~i~lp~~l~~I~~~----aF~~C~~L~~i~ip 341 (379)
T 4h09_A 308 DCVKLSSVTLPTALKTIQVY----AFKNCKALSTISYP 341 (379)
T ss_dssp TCTTCCEEECCTTCCEECTT----TTTTCTTCCCCCCC
T ss_pred CCCCCCEEEcCccccEEHHH----HhhCCCCCCEEEEC
Confidence 7899999999632 23332 24679999999885
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=33.66 E-value=14 Score=26.77 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=9.3
Q ss_pred hcCCCCcEEEeeCCCC
Q 021719 194 MYLPKLKVLSLRCTTL 209 (308)
Q Consensus 194 ~~~p~L~~L~L~~~~i 209 (308)
..+++|+.|+|.+|.+
T Consensus 52 ~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 52 DALPALRTAHLGANPW 67 (130)
T ss_dssp GGCTTCCEEECCSSCC
T ss_pred hhccccCEEEecCCCe
Confidence 3566666666665543
No 171
>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin, antifungal peptide, antimicrobial protein; NMR {Echinochloa crus-galli}
Probab=26.82 E-value=12 Score=20.17 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=9.3
Q ss_pred hhccccccccc
Q 021719 289 KYEEGLWKDDE 299 (308)
Q Consensus 289 ~~~~~~~~~~~ 299 (308)
+||++.|+.+|
T Consensus 14 r~edePWr~QE 24 (37)
T 2l2r_A 14 RHEDEPWRVQE 24 (37)
T ss_dssp HTSSCGGGHHH
T ss_pred hccCCccHHHH
Confidence 68889999876
No 172
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=25.41 E-value=42 Score=19.49 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=10.0
Q ss_pred cCCCCHHHHHHHhcC
Q 021719 11 WEDLDNDILVKIFQS 25 (308)
Q Consensus 11 ~~~LP~eiL~~If~~ 25 (308)
|..||.||-.+|++-
T Consensus 21 F~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 21 FKQLPADIQEEILSG 35 (48)
T ss_dssp TTTSCHHHHHHHTTC
T ss_pred HHHCcHHHHHHHHhc
Confidence 667777777776653
No 173
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=23.62 E-value=35 Score=23.44 Aligned_cols=11 Identities=27% Similarity=0.114 Sum_probs=5.4
Q ss_pred cCCCCcEEEee
Q 021719 195 YLPKLKVLSLR 205 (308)
Q Consensus 195 ~~p~L~~L~L~ 205 (308)
.|.+|+.+.+.
T Consensus 41 ~C~~L~~i~~~ 51 (100)
T 2lz0_A 41 GCTALEKLILT 51 (100)
T ss_dssp TCTTCCCEEEC
T ss_pred ccCCccEEEEc
Confidence 44555555554
Done!