Your job contains 1 sequence.
>021720
MRNQSEGGNVNLQSCGGQLIDVAFYKMTSNDIFEKLIMVSDMKPSSFGLGLITKSMSFPT
HPPTHSQFVQSGGWLKSPNLFYSLKSEANPVPVTSILLKMQSFRGSIRLIQRHALTSSNT
CSIPNGVVSTKSVGHSFHSLNNYLSRSLHLLATRSQVKYGYQTESWGSSNYYIRTSGPGL
FPPAMMEPHFANRCISTSESSVESASYPPAAASSDLAPRIKFKRLDKTARHIMQILDKEA
VENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGV
GVESLFPL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 021720
(308 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2139757 - symbol:AT4G11630 species:3702 "Arabi... 384 3.2e-41 2
TAIR|locus:2181975 - symbol:AT5G11750 species:3702 "Arabi... 397 6.3e-37 1
TAIR|locus:2032457 - symbol:AT1G24240 species:3702 "Arabi... 383 1.9e-35 1
TAIR|locus:2129186 - symbol:AT4G17560 species:3702 "Arabi... 224 1.4e-18 1
TAIR|locus:2171609 - symbol:AT5G47190 species:3702 "Arabi... 223 1.7e-18 1
TIGR_CMR|CHY_1428 - symbol:CHY_1428 "ribosomal protein L1... 139 4.1e-09 1
TIGR_CMR|CBU_0442 - symbol:CBU_0442 "ribosomal protein L1... 136 8.9e-09 1
TIGR_CMR|GSU_0648 - symbol:GSU_0648 "ribosomal protein L1... 132 2.5e-08 1
TIGR_CMR|BA_3978 - symbol:BA_3978 "ribosomal protein L19"... 129 5.4e-08 1
UNIPROTKB|P0A7K6 - symbol:rplS "50S ribosomal subunit pro... 127 8.9e-08 1
TIGR_CMR|CJE_0814 - symbol:CJE_0814 "ribosomal protein L1... 121 4.1e-07 1
UNIPROTKB|P66080 - symbol:rplS "50S ribosomal protein L19... 116 1.5e-06 1
UNIPROTKB|Q9KUF7 - symbol:rplS "50S ribosomal protein L19... 116 1.5e-06 1
TIGR_CMR|VC_0564 - symbol:VC_0564 "ribosomal protein L19"... 116 1.5e-06 1
TIGR_CMR|SPO_3257 - symbol:SPO_3257 "ribosomal protein L1... 115 1.9e-06 1
TIGR_CMR|CPS_4066 - symbol:CPS_4066 "ribosomal protein L1... 111 5.3e-06 1
TIGR_CMR|DET_0338 - symbol:DET_0338 "ribosomal protein L1... 110 6.8e-06 1
TIGR_CMR|SO_1360 - symbol:SO_1360 "ribosomal protein L19"... 102 5.2e-05 1
TIGR_CMR|NSE_0895 - symbol:NSE_0895 "ribosomal protein L1... 95 0.00030 1
>TAIR|locus:2139757 [details] [associations]
symbol:AT4G11630 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR001857
Pfam:PF01245 PRINTS:PR00061 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:AL161532
EMBL:AL049500 InterPro:IPR008991 SUPFAM:SSF50104 eggNOG:COG0335
PANTHER:PTHR15680 HOGENOM:HOG000016266 TIGRFAMs:TIGR01024
UniGene:At.33552 ProtClustDB:CLSN2685510 EMBL:BT012188
EMBL:AK221452 IPI:IPI00535492 PIR:T04210 RefSeq:NP_192900.1
ProteinModelPortal:Q9T0D0 SMR:Q9T0D0 STRING:Q9T0D0
EnsemblPlants:AT4G11630.1 GeneID:826768 KEGG:ath:AT4G11630
TAIR:At4g11630 InParanoid:Q9T0D0 OMA:CGSWSEN PhylomeDB:Q9T0D0
Genevestigator:Q9T0D0 Uniprot:Q9T0D0
Length = 225
Score = 384 (140.2 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
Identities = 74/90 (82%), Positives = 86/90 (95%)
Query: 219 RIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGI 278
RIKFKRLDKTA+HIMQI+DKEAVE V+S REIP+IKPGYIVQLKV +PENKRRVS +KG+
Sbjct: 102 RIKFKRLDKTAKHIMQIVDKEAVEEVRSLREIPEIKPGYIVQLKVEVPENKRRVSIVKGV 161
Query: 279 VIARRNAGISTTFRLRRLVAGVGVESLFPL 308
VIARRNAG+++TFR+RRLVAGVGVES+FPL
Sbjct: 162 VIARRNAGLNSTFRIRRLVAGVGVESMFPL 191
Score = 70 (29.7 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 100 MQSFRGSIRLIQRHALTSSNT 120
MQS RGS RL+QRH + SNT
Sbjct: 1 MQSIRGSTRLLQRHRFSISNT 21
>TAIR|locus:2181975 [details] [associations]
symbol:AT5G11750 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR001857 Pfam:PF01245
PRINTS:PR00061 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:AL163814
InterPro:IPR008991 SUPFAM:SSF50104 eggNOG:COG0335 PANTHER:PTHR15680
HOGENOM:HOG000016266 TIGRFAMs:TIGR01024 ProtClustDB:CLSN2685510
EMBL:AF375449 EMBL:AY060543 IPI:IPI00521915 PIR:T48534
RefSeq:NP_196736.1 UniGene:At.27374 ProteinModelPortal:Q9LYF5
SMR:Q9LYF5 STRING:Q9LYF5 EnsemblPlants:AT5G11750.1 GeneID:831047
KEGG:ath:AT5G11750 TAIR:At5g11750 InParanoid:Q9LYF5
PhylomeDB:Q9LYF5 Genevestigator:Q9LYF5 Uniprot:Q9LYF5
Length = 229
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 97/209 (46%), Positives = 125/209 (59%)
Query: 100 MQSFRGSIRLIQRHALTSSNTCSIPNGVVSTKSVGHSFHSLNNYLSRSLHLLATRSQVKY 159
MQS R S RL+QRH + SNT + S+ S + + + S TR+
Sbjct: 1 MQSIRSSTRLLQRHRFSISNTLRFTSSSSSSGSWSENESRMVGFDS----FPCTRAATYL 56
Query: 160 GYQTESWGSSNYYIRTSGPGLFPPAMMEPHFANRCIXXXXXXXXXXXXXXXXXXXDLAPR 219
++ G S+ I P + ++ RC + R
Sbjct: 57 ISSLKNVGFSSSAI---------PKQ-DFKYSLRCFSTTGDSVQSTPQGSPESDCVVPQR 106
Query: 220 IKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIV 279
IKFKRLDKTA+HIMQI+DKEAVE V++ REIP+IKPGYIVQLKV +PENKRRVS +KG+V
Sbjct: 107 IKFKRLDKTAKHIMQIVDKEAVEEVRNLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVV 166
Query: 280 IARRNAGISTTFRLRRLVAGVGVESLFPL 308
IARRNAG+++TFR+RRLVAGVGVES+FPL
Sbjct: 167 IARRNAGLNSTFRIRRLVAGVGVESMFPL 195
>TAIR|locus:2032457 [details] [associations]
symbol:AT1G24240 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0051607 "defense response to
virus" evidence=RCA] InterPro:IPR001857 Pfam:PF01245 PRINTS:PR00061
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:AC002396 InterPro:IPR008991 SUPFAM:SSF50104
eggNOG:COG0335 PANTHER:PTHR15680 HOGENOM:HOG000016266
TIGRFAMs:TIGR01024 EMBL:AY044318 EMBL:AY049255 EMBL:AY090278
IPI:IPI00541442 PIR:T00654 RefSeq:NP_564213.1 UniGene:At.33552
UniGene:At.62626 ProteinModelPortal:O48691 SMR:O48691 STRING:O48691
EnsemblPlants:AT1G24240.1 GeneID:839038 KEGG:ath:AT1G24240
TAIR:At1g24240 InParanoid:O48691 PhylomeDB:O48691
ProtClustDB:CLSN2685510 Genevestigator:O48691 Uniprot:O48691
Length = 222
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 90/180 (50%), Positives = 116/180 (64%)
Query: 135 HSFHSLNNYL---SRSLHLLATRSQVKYGYQT-ESWGSSNYYIRTSGPGLFPPAMMEP-- 188
H F S++N L S S + K G+ + S ++ Y I + F + P
Sbjct: 14 HRF-SISNTLPFTSSSCGSWSANESRKLGFDSFPSTRAATYLISSLKNAGFSSLAVVPKQ 72
Query: 189 HFANRCIXXXXXXXXXXXXXXXXXXXDLAPRIKFKRLDKTARHIMQILDKEAVENVKSQR 248
+F++RC + RIKFKRLDKTA+HIMQI+DKEAVE V++ R
Sbjct: 73 NFSSRCFSTTGDSVQGSPESDCV----VPQRIKFKRLDKTAKHIMQIVDKEAVEEVRTLR 128
Query: 249 EIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL 308
EIP+IKPGYIVQLKV +PENKRRVS +KG+VIARRNAG+++TFR+RRLVAGVGVES+FPL
Sbjct: 129 EIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTFRIRRLVAGVGVESMFPL 188
>TAIR|locus:2129186 [details] [associations]
symbol:AT4G17560 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0042254 "ribosome
biogenesis" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR001857 Pfam:PF01245 PRINTS:PR00061 PROSITE:PS01015
GO:GO:0009570 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0016020
GO:GO:0006412 GO:GO:0009941 GO:GO:0005840 GO:GO:0003735 EMBL:Z97343
GO:GO:0019843 EMBL:AL161546 InterPro:IPR008991 SUPFAM:SSF50104
eggNOG:COG0335 PANTHER:PTHR15680 EMBL:AY062821 EMBL:AY081625
EMBL:AY086121 IPI:IPI00545108 PIR:C71445 RefSeq:NP_567531.1
UniGene:At.27419 ProteinModelPortal:Q8W463 SMR:Q8W463 STRING:Q8W463
PaxDb:Q8W463 PRIDE:Q8W463 EnsemblPlants:AT4G17560.1 GeneID:827471
KEGG:ath:AT4G17560 TAIR:At4g17560 HOGENOM:HOG000016266
InParanoid:Q8W463 OMA:VHTTIRV PhylomeDB:Q8W463
ProtClustDB:CLSN2689487 Genevestigator:Q8W463 GermOnline:AT4G17560
TIGRFAMs:TIGR01024 Uniprot:Q8W463
Length = 225
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 40/77 (51%), Positives = 63/77 (81%)
Query: 232 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTF 291
+M IL+++A+E + R +P+I+ G IV++K+ +PENKRR+S KGIV++R+NAGI TT
Sbjct: 114 VMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTI 173
Query: 292 RLRRLVAGVGVESLFPL 308
R+RR++AG+GVE +FP+
Sbjct: 174 RIRRIIAGIGVEIVFPI 190
>TAIR|locus:2171609 [details] [associations]
symbol:AT5G47190 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0042254 "ribosome
biogenesis" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0010103 "stomatal complex
morphogenesis" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010267 "production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0048481 "ovule development"
evidence=RCA] [GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR001857 Pfam:PF01245 PRINTS:PR00061 PROSITE:PS01015
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0016020
GO:GO:0006412 GO:GO:0009941 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 EMBL:AB018117 InterPro:IPR008991 SUPFAM:SSF50104
eggNOG:COG0335 PANTHER:PTHR15680 HOGENOM:HOG000016266
ProtClustDB:CLSN2689487 TIGRFAMs:TIGR01024 EMBL:AY080626
EMBL:AY117181 EMBL:AY086970 IPI:IPI00525994 RefSeq:NP_568677.1
UniGene:At.29908 ProteinModelPortal:Q8RXX5 SMR:Q8RXX5 STRING:Q8RXX5
PaxDb:Q8RXX5 PRIDE:Q8RXX5 EnsemblPlants:AT5G47190.1 GeneID:834765
KEGG:ath:AT5G47190 GeneFarm:194 TAIR:At5g47190 InParanoid:Q8RXX5
OMA:DIMGLLN PhylomeDB:Q8RXX5 Genevestigator:Q8RXX5
GermOnline:AT5G47190 Uniprot:Q8RXX5
Length = 229
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 40/77 (51%), Positives = 63/77 (81%)
Query: 232 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTF 291
IM +L+K+A+E ++ R +P ++ G IV++K+ +PENKRR+S KGIV++R+NAGI TT
Sbjct: 118 IMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTI 177
Query: 292 RLRRLVAGVGVESLFPL 308
R+RR++AG+GVE +FP+
Sbjct: 178 RIRRIIAGIGVEIVFPI 194
>TIGR_CMR|CHY_1428 [details] [associations]
symbol:CHY_1428 "ribosomal protein L19" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] HAMAP:MF_00402 InterPro:IPR001857 InterPro:IPR018257
Pfam:PF01245 PIRSF:PIRSF002191 PRINTS:PR00061 PROSITE:PS01015
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 InterPro:IPR008991 SUPFAM:SSF50104 eggNOG:COG0335
PANTHER:PTHR15680 TIGRFAMs:TIGR01024 KO:K02884 OMA:TLKVHVR
ProtClustDB:PRK05338 HOGENOM:HOG000016264 RefSeq:YP_360260.1
ProteinModelPortal:Q3AC74 SMR:Q3AC74 STRING:Q3AC74 GeneID:3728543
KEGG:chy:CHY_1428 PATRIC:21275987
BioCyc:CHYD246194:GJCN-1427-MONOMER Uniprot:Q3AC74
Length = 113
Score = 139 (54.0 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 26/71 (36%), Positives = 48/71 (67%)
Query: 239 EAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLV 297
+++E + ++++P+ +PG V++ VI N+ R+ +G+VI +R +G+S TF +RR+
Sbjct: 5 KSLEEEQLRKDLPEFRPGDTVKVYFKVIEGNRERIQPYEGVVIRKRGSGLSATFTVRRVS 64
Query: 298 AGVGVESLFPL 308
G+GVE FPL
Sbjct: 65 YGIGVERTFPL 75
>TIGR_CMR|CBU_0442 [details] [associations]
symbol:CBU_0442 "ribosomal protein L19" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] HAMAP:MF_00402 InterPro:IPR001857
InterPro:IPR018257 Pfam:PF01245 PIRSF:PIRSF002191 PRINTS:PR00061
PROSITE:PS01015 GO:GO:0006412 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 InterPro:IPR008991
SUPFAM:SSF50104 eggNOG:COG0335 PANTHER:PTHR15680 TIGRFAMs:TIGR01024
KO:K02884 OMA:TLKVHVR ProtClustDB:PRK05338 HOGENOM:HOG000016264
RefSeq:NP_819479.1 ProteinModelPortal:Q83E85 SMR:Q83E85
GeneID:1208326 KEGG:cbu:CBU_0442 PATRIC:17929575
BioCyc:CBUR227377:GJ7S-440-MONOMER Uniprot:Q83E85
Length = 115
Score = 136 (52.9 bits), Expect = 8.9e-09, P = 8.9e-09
Identities = 29/79 (36%), Positives = 52/79 (65%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGIST 289
+I+Q+L+ E + +EIPD + G V ++V + E N+ R+ +G+VIARR+ G+++
Sbjct: 3 NIIQLLETEQTQG----KEIPDFRAGDTVTVQVKVKEGNRERLQAFEGVVIARRHRGLNS 58
Query: 290 TFRLRRLVAGVGVESLFPL 308
+F +R++ G GVE +F L
Sbjct: 59 SFTVRKVSHGEGVERVFQL 77
>TIGR_CMR|GSU_0648 [details] [associations]
symbol:GSU_0648 "ribosomal protein L19" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] HAMAP:MF_00402
InterPro:IPR001857 InterPro:IPR018257 Pfam:PF01245
PIRSF:PIRSF002191 PRINTS:PR00061 PROSITE:PS01015 GO:GO:0006412
GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
InterPro:IPR008991 SUPFAM:SSF50104 eggNOG:COG0335 PANTHER:PTHR15680
TIGRFAMs:TIGR01024 KO:K02884 OMA:TLKVHVR ProtClustDB:PRK05338
HOGENOM:HOG000016264 RefSeq:NP_951705.1 ProteinModelPortal:Q74FG1
SMR:Q74FG1 GeneID:2687158 KEGG:gsu:GSU0648 PATRIC:22024043
BioCyc:GSUL243231:GH27-658-MONOMER Uniprot:Q74FG1
Length = 118
Score = 132 (51.5 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 26/71 (36%), Positives = 46/71 (64%)
Query: 239 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLV 297
+A+E + ++ IP KPG +++ V I E +K R+ +G+ I+R+N GI +F +R++
Sbjct: 5 DAIELEQMKKNIPPFKPGDTLKVHVKIVEGDKSRIQAFQGVCISRQNGGIRESFTVRKIS 64
Query: 298 AGVGVESLFPL 308
+GVE +FPL
Sbjct: 65 NNIGVERVFPL 75
>TIGR_CMR|BA_3978 [details] [associations]
symbol:BA_3978 "ribosomal protein L19" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00402 InterPro:IPR001857 InterPro:IPR018257 Pfam:PF01245
PIRSF:PIRSF002191 PRINTS:PR00061 PROSITE:PS01015 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 InterPro:IPR008991 SUPFAM:SSF50104
eggNOG:COG0335 PANTHER:PTHR15680 TIGRFAMs:TIGR01024
RefSeq:NP_846220.1 RefSeq:YP_020617.1 RefSeq:YP_029942.1
ProteinModelPortal:Q81WJ6 SMR:Q81WJ6 DNASU:1086794
EnsemblBacteria:EBBACT00000009389 EnsemblBacteria:EBBACT00000014058
EnsemblBacteria:EBBACT00000023738 GeneID:1086794 GeneID:2820046
GeneID:2848344 KEGG:ban:BA_3978 KEGG:bar:GBAA_3978 KEGG:bat:BAS3691
HOGENOM:HOG000016265 KO:K02884 OMA:TLKVHVR ProtClustDB:PRK05338
BioCyc:BANT260799:GJAJ-3749-MONOMER
BioCyc:BANT261594:GJ7F-3866-MONOMER Uniprot:Q81WJ6
Length = 114
Score = 129 (50.5 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 233 MQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTF 291
MQ L E + + + ++P +PG +++ V + E R R+ +G+VI RR GIS TF
Sbjct: 1 MQQLIAEITKG-QLKTDLPSFRPGDTLRVHVKVVEGTRERIQLFEGVVIKRRGGGISETF 59
Query: 292 RLRRLVAGVGVESLFPL 308
+R++ GVGVE FP+
Sbjct: 60 TVRKISYGVGVERTFPV 76
>UNIPROTKB|P0A7K6 [details] [associations]
symbol:rplS "50S ribosomal subunit protein L19"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
HAMAP:MF_00402 InterPro:IPR001857 InterPro:IPR018257 Pfam:PF01245
PIRSF:PIRSF002191 PRINTS:PR00061 PROSITE:PS01015 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 PDB:2VHM
PDBsum:2VHM PDB:2RDO PDBsum:2RDO InterPro:IPR008991 SUPFAM:SSF50104
eggNOG:COG0335 PANTHER:PTHR15680 EMBL:X01818 TIGRFAMs:TIGR01024
PDB:3J0T PDB:3J0W PDB:3J0Y PDB:3J11 PDB:3J12 PDB:3J14 PDB:3SGF
PDB:3UOS PDBsum:3J0T PDBsum:3J0W PDBsum:3J0Y PDBsum:3J11
PDBsum:3J12 PDBsum:3J14 PDBsum:3SGF PDBsum:3UOS PDB:1P85 PDB:1P86
PDB:1VS6 PDB:1VS8 PDB:1VT2 PDB:2AW4 PDB:2AWB PDB:2GYA PDB:2GYC
PDB:2I2T PDB:2I2V PDB:2J28 PDB:2QAM PDB:2QAO PDB:2QBA PDB:2QBC
PDB:2QBE PDB:2QBG PDB:2QBI PDB:2QBK PDB:2QOV PDB:2QOX PDB:2QOZ
PDB:2QP1 PDB:2VHN PDB:2WWQ PDB:2Z4L PDB:2Z4N PDB:3DF2 PDB:3DF4
PDB:3E1B PDB:3E1D PDB:3FIK PDB:3I1N PDB:3I1P PDB:3I1R PDB:3I1T
PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU PDB:3J01 PDB:3J19 PDB:3KCR
PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD PDB:3OFQ PDB:3OFR PDB:3OFZ
PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T PDB:4GAR PDB:4GAU PDBsum:1P85
PDBsum:1P86 PDBsum:1VS6 PDBsum:1VS8 PDBsum:1VT2 PDBsum:2AW4
PDBsum:2AWB PDBsum:2GYA PDBsum:2GYC PDBsum:2I2T PDBsum:2I2V
PDBsum:2J28 PDBsum:2QAM PDBsum:2QAO PDBsum:2QBA PDBsum:2QBC
PDBsum:2QBE PDBsum:2QBG PDBsum:2QBI PDBsum:2QBK PDBsum:2QOV
PDBsum:2QOX PDBsum:2QOZ PDBsum:2QP1 PDBsum:2VHN PDBsum:2WWQ
PDBsum:2Z4L PDBsum:2Z4N PDBsum:3DF2 PDBsum:3DF4 PDBsum:3E1B
PDBsum:3E1D PDBsum:3FIK PDBsum:3I1N PDBsum:3I1P PDBsum:3I1R
PDBsum:3I1T PDBsum:3I20 PDBsum:3I22 PDBsum:3IZT PDBsum:3IZU
PDBsum:3J01 PDBsum:3J19 PDBsum:3KCR PDBsum:3OAS PDBsum:3OAT
PDBsum:3OFC PDBsum:3OFD PDBsum:3OFQ PDBsum:3OFR PDBsum:3OFZ
PDBsum:3OG0 PDBsum:3ORB PDBsum:3R8S PDBsum:3R8T PDBsum:4GAR
PDBsum:4GAU PDB:3BBX PDBsum:3BBX KO:K02884 OMA:TLKVHVR
ProtClustDB:PRK05338 HOGENOM:HOG000016264 PIR:S07951
RefSeq:NP_417097.1 RefSeq:YP_490829.1 ProteinModelPortal:P0A7K6
SMR:P0A7K6 DIP:DIP-35793N IntAct:P0A7K6 MINT:MINT-1245288
PhosSite:P0810432 PaxDb:P0A7K6 PRIDE:P0A7K6
EnsemblBacteria:EBESCT00000002329 EnsemblBacteria:EBESCT00000018082
GeneID:12931612 GeneID:947096 KEGG:ecj:Y75_p2554 KEGG:eco:b2606
PATRIC:32120611 EchoBASE:EB0873 EcoGene:EG10880
BioCyc:EcoCyc:EG10880-MONOMER BioCyc:ECOL316407:JW2587-MONOMER
EvolutionaryTrace:P0A7K6 Genevestigator:P0A7K6 Uniprot:P0A7K6
Length = 115
Score = 127 (49.8 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 24/67 (35%), Positives = 45/67 (67%)
Query: 241 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAG 299
+E + ++++P +PG V++KV V+ +K+R+ +G+VIA RN G+ + F +R++ G
Sbjct: 8 LEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNG 67
Query: 300 VGVESLF 306
GVE +F
Sbjct: 68 EGVERVF 74
>TIGR_CMR|CJE_0814 [details] [associations]
symbol:CJE_0814 "ribosomal protein L19" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] HAMAP:MF_00402
InterPro:IPR001857 InterPro:IPR018257 Pfam:PF01245
PIRSF:PIRSF002191 PRINTS:PR00061 PROSITE:PS01015 GO:GO:0006412
GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0003735
InterPro:IPR008991 SUPFAM:SSF50104 eggNOG:COG0335 PANTHER:PTHR15680
TIGRFAMs:TIGR01024 KO:K02884 OMA:TLKVHVR ProtClustDB:PRK05338
RefSeq:YP_178818.1 ProteinModelPortal:Q5HV67 STRING:Q5HV67
GeneID:3230764 KEGG:cjr:CJE0814 PATRIC:20043373
HOGENOM:HOG000016264 BioCyc:CJEJ195099:GJC0-829-MONOMER
Uniprot:Q5HV67
Length = 118
Score = 121 (47.7 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 248 REIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAG-VGVESL 305
+ +PD + G ++L + I E +K R+ +GI IARR G+S TF +R++ A VGVE +
Sbjct: 17 KNVPDFRAGDTLKLAIRIKEGDKTRIQNFEGICIARRGNGVSETFIVRKIGANNVGVERI 76
Query: 306 FPL 308
FP+
Sbjct: 77 FPI 79
>UNIPROTKB|P66080 [details] [associations]
symbol:rplS "50S ribosomal protein L19" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] HAMAP:MF_00402
InterPro:IPR001857 InterPro:IPR018257 Pfam:PF01245
PIRSF:PIRSF002191 PRINTS:PR00061 PROSITE:PS01015 GO:GO:0005886
GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:BX842581 InterPro:IPR008991 SUPFAM:SSF50104 eggNOG:COG0335
PANTHER:PTHR15680 TIGRFAMs:TIGR01024 HOGENOM:HOG000016265 KO:K02884
OMA:TLKVHVR ProtClustDB:PRK05338 PIR:C70927 RefSeq:NP_217420.1
RefSeq:NP_337484.1 RefSeq:YP_006516357.1 ProteinModelPortal:P66080
SMR:P66080 PRIDE:P66080 EnsemblBacteria:EBMYCT00000003311
EnsemblBacteria:EBMYCT00000069725 GeneID:13317697 GeneID:887356
GeneID:925306 KEGG:mtc:MT2972 KEGG:mtu:Rv2904c KEGG:mtv:RVBD_2904c
PATRIC:18128304 TubercuList:Rv2904c Uniprot:P66080
Length = 113
Score = 116 (45.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 241 VENVKSQREIPDIKPGYIVQLKVVIPEN-KRRVSTLKGIVIARRNAGISTTFRLRRLVAG 299
V+ + +IP PG + + V + E K R+ KG+VI R+ GI TF +R+ G
Sbjct: 7 VDKPSLRDDIPAFNPGDTINVHVKVIEGAKERLQVFKGVVIRRQGGGIRETFTVRKESYG 66
Query: 300 VGVESLFPL 308
VGVE FP+
Sbjct: 67 VGVERTFPV 75
>UNIPROTKB|Q9KUF7 [details] [associations]
symbol:rplS "50S ribosomal protein L19" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] HAMAP:MF_00402 InterPro:IPR001857
InterPro:IPR018257 Pfam:PF01245 PIRSF:PIRSF002191 PRINTS:PR00061
PROSITE:PS01015 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
InterPro:IPR008991 SUPFAM:SSF50104 eggNOG:COG0335 PANTHER:PTHR15680
TIGRFAMs:TIGR01024 KO:K02884 OMA:TLKVHVR ProtClustDB:PRK05338
PIR:D82307 RefSeq:NP_230215.1 ProteinModelPortal:Q9KUF7 SMR:Q9KUF7
DNASU:2615241 GeneID:2615241 KEGG:vch:VC0564 PATRIC:20080246
Uniprot:Q9KUF7
Length = 117
Score = 116 (45.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 239 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLV 297
+A+E + ++++P PG V ++V + E R R+ +GIVIA RN G+ + F +R++
Sbjct: 6 KALEQEQMKQDLPQFAPGDTVVVQVKVKEGDRERLQAFEGIVIAIRNRGLHSAFTVRKIS 65
Query: 298 AGVGVESLF 306
G GVE F
Sbjct: 66 NGEGVERTF 74
>TIGR_CMR|VC_0564 [details] [associations]
symbol:VC_0564 "ribosomal protein L19" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00402 InterPro:IPR001857 InterPro:IPR018257 Pfam:PF01245
PIRSF:PIRSF002191 PRINTS:PR00061 PROSITE:PS01015 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
InterPro:IPR008991 SUPFAM:SSF50104 eggNOG:COG0335 PANTHER:PTHR15680
TIGRFAMs:TIGR01024 KO:K02884 OMA:TLKVHVR ProtClustDB:PRK05338
PIR:D82307 RefSeq:NP_230215.1 ProteinModelPortal:Q9KUF7 SMR:Q9KUF7
DNASU:2615241 GeneID:2615241 KEGG:vch:VC0564 PATRIC:20080246
Uniprot:Q9KUF7
Length = 117
Score = 116 (45.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 239 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLV 297
+A+E + ++++P PG V ++V + E R R+ +GIVIA RN G+ + F +R++
Sbjct: 6 KALEQEQMKQDLPQFAPGDTVVVQVKVKEGDRERLQAFEGIVIAIRNRGLHSAFTVRKIS 65
Query: 298 AGVGVESLF 306
G GVE F
Sbjct: 66 NGEGVERTF 74
>TIGR_CMR|SPO_3257 [details] [associations]
symbol:SPO_3257 "ribosomal protein L19" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] HAMAP:MF_00402
InterPro:IPR001857 InterPro:IPR018257 Pfam:PF01245
PIRSF:PIRSF002191 PRINTS:PR00061 PROSITE:PS01015 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
InterPro:IPR008991 SUPFAM:SSF50104 eggNOG:COG0335 PANTHER:PTHR15680
TIGRFAMs:TIGR01024 KO:K02884 ProtClustDB:PRK05338
HOGENOM:HOG000016264 OMA:EAKRTLP RefSeq:YP_168460.1
ProteinModelPortal:Q5LNE8 GeneID:3195464 KEGG:sil:SPO3257
PATRIC:23379959 Uniprot:Q5LNE8
Length = 127
Score = 115 (45.5 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 235 ILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRN-AGISTTFR 292
I EA + ++IPD K G +++ + E R RV +G+ I+R+N +GI+ +F
Sbjct: 4 IAQLEAEQIAALGKDIPDFKAGDTIRVGYKVTEGTRSRVQNYEGVCISRKNGSGIAGSFT 63
Query: 293 LRRLVAGVGVESLFPL 308
+R++ G GVE +FPL
Sbjct: 64 VRKISFGEGVERVFPL 79
>TIGR_CMR|CPS_4066 [details] [associations]
symbol:CPS_4066 "ribosomal protein L19" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS] HAMAP:MF_00402
InterPro:IPR001857 InterPro:IPR018257 Pfam:PF01245
PIRSF:PIRSF002191 PRINTS:PR00061 PROSITE:PS01015 GO:GO:0006412
GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003735
InterPro:IPR008991 SUPFAM:SSF50104 eggNOG:COG0335 PANTHER:PTHR15680
TIGRFAMs:TIGR01024 KO:K02884 OMA:TLKVHVR ProtClustDB:PRK05338
HOGENOM:HOG000016264 RefSeq:YP_270721.1 ProteinModelPortal:Q47WV1
SMR:Q47WV1 STRING:Q47WV1 GeneID:3521778 KEGG:cps:CPS_4066
PATRIC:21471007 BioCyc:CPSY167879:GI48-4079-MONOMER Uniprot:Q47WV1
Length = 117
Score = 111 (44.1 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 23/69 (33%), Positives = 43/69 (62%)
Query: 239 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLV 297
E +E + + ++P PG V ++V + E +K R+ +G+VIA ++ G+ + F +R++
Sbjct: 6 EMLEQEQMKTDLPAFAPGDTVVVQVKVTEADKSRLQAFEGVVIAVKSRGLHSAFTVRKIS 65
Query: 298 AGVGVESLF 306
GVGVE +F
Sbjct: 66 NGVGVERVF 74
>TIGR_CMR|DET_0338 [details] [associations]
symbol:DET_0338 "ribosomal protein L19" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
HAMAP:MF_00402 InterPro:IPR001857 InterPro:IPR018257 Pfam:PF01245
PIRSF:PIRSF002191 PRINTS:PR00061 PROSITE:PS01015 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR008991 SUPFAM:SSF50104 eggNOG:COG0335 PANTHER:PTHR15680
TIGRFAMs:TIGR01024 KO:K02884 OMA:TLKVHVR ProtClustDB:PRK05338
HOGENOM:HOG000016264 RefSeq:YP_181085.1 ProteinModelPortal:Q3Z9L4
STRING:Q3Z9L4 GeneID:3230381 KEGG:det:DET0338 PATRIC:21607745
BioCyc:DETH243164:GJNF-338-MONOMER Uniprot:Q3Z9L4
Length = 136
Score = 110 (43.8 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 237 DKE--AVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRL 293
D+E AVEN + + +P PG +++ I E +K R+ +G+V+ + A F +
Sbjct: 20 DEETVAVENTAAGKVLPSFGPGDTIKVHARIKEGDKERIQMFQGVVLKVKQAADGGNFTV 79
Query: 294 RRLVAGVGVESLFP 307
RR+ GVGVE FP
Sbjct: 80 RRISYGVGVERTFP 93
>TIGR_CMR|SO_1360 [details] [associations]
symbol:SO_1360 "ribosomal protein L19" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00402 InterPro:IPR001857 InterPro:IPR018257 Pfam:PF01245
PIRSF:PIRSF002191 PRINTS:PR00061 PROSITE:PS01015 GO:GO:0006412
GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003735
InterPro:IPR008991 SUPFAM:SSF50104 eggNOG:COG0335 PANTHER:PTHR15680
TIGRFAMs:TIGR01024 KO:K02884 OMA:TLKVHVR ProtClustDB:PRK05338
HOGENOM:HOG000016264 RefSeq:NP_716980.1 ProteinModelPortal:Q8EH70
SMR:Q8EH70 GeneID:1169181 KEGG:son:SO_1360 PATRIC:23522374
Uniprot:Q8EH70
Length = 117
Score = 102 (41.0 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 21/61 (34%), Positives = 38/61 (62%)
Query: 247 QREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESL 305
++++P G V ++V + E +K R+ +G+VIA+RN G+ + F +R++ G GVE
Sbjct: 14 KQDVPAFGAGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERA 73
Query: 306 F 306
F
Sbjct: 74 F 74
>TIGR_CMR|NSE_0895 [details] [associations]
symbol:NSE_0895 "ribosomal protein L19" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0042255 "ribosome assembly" evidence=ISS]
InterPro:IPR001857 InterPro:IPR018257 Pfam:PF01245
PIRSF:PIRSF002191 PRINTS:PR00061 PROSITE:PS01015 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000237 GenomeReviews:CP000237_GR
InterPro:IPR008991 SUPFAM:SSF50104 eggNOG:COG0335 PANTHER:PTHR15680
TIGRFAMs:TIGR01024 KO:K02884 ProtClustDB:PRK05338
HOGENOM:HOG000016264 OMA:EAKRTLP RefSeq:YP_506761.1
ProteinModelPortal:Q2GCN5 STRING:Q2GCN5 GeneID:3931562
KEGG:nse:NSE_0895 PATRIC:22681781
BioCyc:NSEN222891:GHFU-898-MONOMER Uniprot:Q2GCN5
Length = 120
Score = 95 (38.5 bits), Expect = 0.00030, P = 0.00030
Identities = 27/80 (33%), Positives = 40/80 (50%)
Query: 233 MQILDK--EAVENVKSQ-REIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGIST 289
M IL K EA S+ R P+ + GY + ++ + R KG+ I + N G+ +
Sbjct: 1 MGILAKFNEAQRKALSEGRNYPEFRAGYTMSVEFYVQGTSGRTQVFKGLCIGKSNKGVHS 60
Query: 290 TFRLRRL-VAGVGVESLFPL 308
+F LR+L V V VE F L
Sbjct: 61 SFTLRKLSVHDVYVERTFRL 80
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 308 289 0.00088 115 3 11 22 0.37 34
33 0.43 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 604 (64 KB)
Total size of DFA: 189 KB (2108 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.24u 0.11s 21.35t Elapsed: 00:00:01
Total cpu time: 21.24u 0.11s 21.35t Elapsed: 00:00:01
Start: Fri May 10 08:46:10 2013 End: Fri May 10 08:46:11 2013