BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021720
(308 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P82413|RK19_SPIOL 50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea
GN=RPL19 PE=1 SV=2
Length = 233
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 68/110 (61%), Gaps = 13/110 (11%)
Query: 199 ESSVESASYPPAAASSDLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYI 258
ES E+ PP L IM IL+K+AV + R +P I+ G I
Sbjct: 102 ESEAEAEERPPRQQRVKLG-------------DIMGILNKKAVHAAEELRPVPGIRTGDI 148
Query: 259 VQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL 308
VQ+++ +PENKRR+S KGIVI+R+NAGI TT R+RR++AGVGVE +FPL
Sbjct: 149 VQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPL 198
>sp|Q8W463|RK191_ARATH 50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana
GN=At4g17560 PE=2 SV=1
Length = 225
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 88/151 (58%), Gaps = 15/151 (9%)
Query: 158 KYGYQTESWGSSNYYIRTSGPGLFPPAMMEPHFANRCISTSESSVESASYPPAAASSDLA 217
K+G+ ++ + + +R A E A I+ +E +VE A
Sbjct: 55 KFGFSLDTRVRNEFIVRAEEGNT--EAESEEFVAE--IADTEGNVEEV----VEAKPTRK 106
Query: 218 PRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKG 277
PRIK +M IL+++A+E + R +P+I+ G IV++K+ +PENKRR+S KG
Sbjct: 107 PRIKLG-------DVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKG 159
Query: 278 IVIARRNAGISTTFRLRRLVAGVGVESLFPL 308
IV++R+NAGI TT R+RR++AG+GVE +FP+
Sbjct: 160 IVMSRQNAGIHTTIRIRRIIAGIGVEIVFPI 190
>sp|Q8RXX5|RK192_ARATH 50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana
GN=At5g47190 PE=2 SV=1
Length = 229
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 63/77 (81%)
Query: 232 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTF 291
IM +L+K+A+E ++ R +P ++ G IV++K+ +PENKRR+S KGIV++R+NAGI TT
Sbjct: 118 IMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTI 177
Query: 292 RLRRLVAGVGVESLFPL 308
R+RR++AG+GVE +FP+
Sbjct: 178 RIRRIIAGIGVEIVFPI 194
>sp|Q2RV56|RL19_RHORT 50S ribosomal protein L19 OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=rplS PE=3 SV=1
Length = 163
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGIST 289
+I++ +KE +E + QR +P PG +++ V VI N++RV +G+ IARRNA +++
Sbjct: 2 NIIEQFEKEQIEKLLEQRGVPQFSPGDTLRVHVKVIEGNRQRVQVYEGVCIARRNAALNS 61
Query: 290 TFRLRRLVAGVGVESLFPL 308
+F +R++ G GVE +FPL
Sbjct: 62 SFTVRKISFGEGVERIFPL 80
>sp|B6IP95|RL19_RHOCS 50S ribosomal protein L19 OS=Rhodospirillum centenum (strain ATCC
51521 / SW) GN=rplS PE=3 SV=1
Length = 132
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
+I+Q L++E V + + + IP PG V++ V + E R RV +G+VIAR+NAG+++
Sbjct: 2 NILQQLEQEQVAKLTAGKTIPAFSPGDTVRVNVKVVEGTRERVQAYEGVVIARKNAGLNS 61
Query: 290 TFRLRRLVAGVGVESLFPL 308
+F +R++ G GVE +FPL
Sbjct: 62 SFTVRKISYGEGVERVFPL 80
>sp|Q2VZV5|RL19_MAGSA 50S ribosomal protein L19 OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=rplS PE=3 SV=1
Length = 148
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGIST 289
+I++ L+KE +E + + R +P PG +++ V VI N+ RV +G+ IAR+N G+++
Sbjct: 3 NIIEQLEKEQIEKLTADRGVPSFAPGDTLKVNVKVIEGNRERVQAYEGVCIARKNDGLNS 62
Query: 290 TFRLRRLVAGVGVESLFPL 308
+F +R++ G GVE +FPL
Sbjct: 63 SFVVRKISYGEGVERIFPL 81
>sp|A5G0G7|RL19_ACICJ 50S ribosomal protein L19 OS=Acidiphilium cryptum (strain JF-5)
GN=rplS PE=3 SV=1
Length = 124
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
+++Q +D E + + R +PD KPG +++ V + E +R R+ +G+ IAR N GI++
Sbjct: 2 NVIQTIDAEQIGKLAEARAVPDFKPGDNLRVSVRVTEGERTRIQAFEGVCIARSNRGINS 61
Query: 290 TFRLRRLVAGVGVESLFPL 308
F +R++ G GVE +FPL
Sbjct: 62 NFTVRKISYGEGVERVFPL 80
>sp|B5YK97|RL19_THEYD 50S ribosomal protein L19 OS=Thermodesulfovibrio yellowstonii
(strain ATCC 51303 / DSM 11347 / YP87) GN=rplS PE=3 SV=1
Length = 120
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 240 AVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVA 298
A+E + IPD KPG V++ V + E +K R+ +G+VIARR G+ TF +R++
Sbjct: 8 AIEERFKKSNIPDFKPGDTVKVHVKVKEGDKERIQVFEGVVIARRGGGLRETFTVRKISF 67
Query: 299 GVGVESLFPL 308
GVGVE +FPL
Sbjct: 68 GVGVERVFPL 77
>sp|P30529|RL19_GEOSE 50S ribosomal protein L19 OS=Geobacillus stearothermophilus GN=rplS
PE=3 SV=1
Length = 116
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 50/79 (63%), Gaps = 6/79 (7%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGIST 289
H++Q + KE + ++PD +PG V++ V V+ N+ R+ +G+VI RR AGIS
Sbjct: 3 HLIQEITKEQLRT-----DLPDFRPGDTVRVHVKVVEGNRERIQVFEGVVIKRRGAGISE 57
Query: 290 TFRLRRLVAGVGVESLFPL 308
TF +R++ GVGVE FP+
Sbjct: 58 TFTVRKVSYGVGVERTFPV 76
>sp|C5D8U6|RL19_GEOSW 50S ribosomal protein L19 OS=Geobacillus sp. (strain WCH70) GN=rplS
PE=3 SV=1
Length = 116
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 6/79 (7%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGIST 289
H++Q + KE + ++PD +PG V++ V VI N+ R+ +G+VI RR AGIS
Sbjct: 4 HLIQEITKEQLRT-----DLPDFRPGDTVRVHVKVIEGNRERIQVFEGVVIKRRGAGISE 58
Query: 290 TFRLRRLVAGVGVESLFPL 308
TF +R++ GVGVE FP+
Sbjct: 59 TFTVRKVSYGVGVERTFPV 77
>sp|Q2RJV3|RL19_MOOTA 50S ribosomal protein L19 OS=Moorella thermoacetica (strain ATCC
39073) GN=rplS PE=3 SV=1
Length = 113
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 50/79 (63%), Gaps = 6/79 (7%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGIST 289
+I++ L+KE + +IPD +PG V++ V V+ N+ R+ +G+VI RR GI+
Sbjct: 2 NIIETLEKEQLRT-----DIPDFRPGDTVRVHVKVVEGNRERIQIFEGVVIGRRGRGINE 56
Query: 290 TFRLRRLVAGVGVESLFPL 308
TF +RR+ GV VE +FPL
Sbjct: 57 TFTVRRVSYGVAVERIFPL 75
>sp|A5V9Q3|RL19_SPHWW 50S ribosomal protein L19 OS=Sphingomonas wittichii (strain RW1 /
DSM 6014 / JCM 10273) GN=rplS PE=3 SV=1
Length = 129
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
+++Q L+ E + K + IPD +PG +++ V + E +R RV +G+ IAR N G+ +
Sbjct: 2 NLIQQLEAEQIAKFKESKSIPDFRPGDTLRVGVKVVEGERTRVQAYEGVCIARANKGMGS 61
Query: 290 TFRLRRLVAGVGVESLFPL 308
+F +R++ G GVE +FPL
Sbjct: 62 SFTVRKISFGEGVERVFPL 80
>sp|B9K8P7|RL19_THENN 50S ribosomal protein L19 OS=Thermotoga neapolitana (strain ATCC
49049 / DSM 4359 / NS-E) GN=rplS PE=3 SV=1
Length = 117
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 54/80 (67%), Gaps = 7/80 (8%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGIST 289
H+++I++K+ ++EIPD +PG V++ V VI ++ R +GIVIA+R +GI+
Sbjct: 5 HLVRIIEKKY-----EKKEIPDFRPGDTVRVHVKVIEGDRERTQVFEGIVIAKRGSGINR 59
Query: 290 TFRLRRLVA-GVGVESLFPL 308
TF +RR+ + GVGVE +FP
Sbjct: 60 TFTVRRIGSHGVGVERIFPF 79
>sp|Q39RP0|RL19_GEOMG 50S ribosomal protein L19 OS=Geobacter metallireducens (strain
GS-15 / ATCC 53774 / DSM 7210) GN=rplS PE=3 SV=1
Length = 118
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 233 MQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTF 291
M +D +E +K + IP KPG V++ V I E +K R+ +G+VIAR+N GI +F
Sbjct: 1 MNTIDMLELEQMK--KNIPPFKPGDTVKVHVKIVEGDKSRIQAFQGVVIARQNGGIRESF 58
Query: 292 RLRRLVAGVGVESLFPL 308
+R++ G+GVE +FPL
Sbjct: 59 TVRKISNGIGVERVFPL 75
>sp|A4XLF0|RL19_CALS8 50S ribosomal protein L19 OS=Caldicellulosiruptor saccharolyticus
(strain ATCC 43494 / DSM 8903) GN=rplS PE=3 SV=1
Length = 128
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 241 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAG 299
+E+ +++IPD KPG V++ VI + R+ +G+VI RR G+S TF +RR+ G
Sbjct: 7 IESEMLRKDIPDFKPGDTVRVHFKVIEGGRERIQAFEGLVIKRRGKGLSETFTVRRISYG 66
Query: 300 VGVESLFPL 308
VGVE +FPL
Sbjct: 67 VGVERVFPL 75
>sp|B9M596|RL19_GEOSF 50S ribosomal protein L19 OS=Geobacter sp. (strain FRC-32) GN=rplS
PE=3 SV=1
Length = 118
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 239 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLV 297
+A+E + ++ IP +PG V+++V I E +K R+ +G+VI R+N GI +F +R++
Sbjct: 5 DAIEMEQMKKNIPGFRPGDTVKVQVKIVEGDKSRIQAFQGVVIGRQNGGIRESFTVRKIS 64
Query: 298 AGVGVESLFPL 308
GVGVE FPL
Sbjct: 65 NGVGVERSFPL 75
>sp|A4J664|RL19_DESRM 50S ribosomal protein L19 OS=Desulfotomaculum reducens (strain
MI-1) GN=rplS PE=3 SV=1
Length = 115
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 6/79 (7%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGIST 289
+++Q L++E + ++E+P +PG +++ VI N+ R+ +G+VI RR G+S
Sbjct: 2 NLIQSLEQEQI-----KKELPSFRPGDTIKVNYKVIEGNRERIQAFEGVVIRRRGGGLSE 56
Query: 290 TFRLRRLVAGVGVESLFPL 308
TF +RR+ GVGVE FPL
Sbjct: 57 TFTVRRISYGVGVERTFPL 75
>sp|A9HS58|RL19_GLUDA 50S ribosomal protein L19 OS=Gluconacetobacter diazotrophicus
(strain ATCC 49037 / DSM 5601 / PAl5) GN=rplS PE=3 SV=1
Length = 126
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
+I+Q + + + + + RE+P+ PG V++ V + E +R R+ +G+VIAR N G+++
Sbjct: 2 NIIQQYEADEIARLSAAREVPEFGPGDTVRVSVRVVEGERKRIQAYEGVVIARSNKGLNS 61
Query: 290 TFRLRRLVAGVGVESLFPL 308
F +R++ G GVE +FPL
Sbjct: 62 NFTVRKISNGEGVERVFPL 80
>sp|B9MQX0|RL19_CALBD 50S ribosomal protein L19 OS=Caldicellulosiruptor bescii (strain
ATCC BAA-1888 / DSM 6725 / Z-1320) GN=rplS PE=3 SV=1
Length = 128
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 241 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAG 299
+E+ +++IPD KPG V++ VI + RV +G+VI RR G+S TF +RR+ G
Sbjct: 7 IESEMLRKDIPDFKPGDTVRVYFKVIEGGRERVQAFEGLVIKRRGKGLSETFTVRRISYG 66
Query: 300 VGVESLFPL 308
+GVE +FPL
Sbjct: 67 IGVERVFPL 75
>sp|B8E2G3|RL19_DICTD 50S ribosomal protein L19 OS=Dictyoglomus turgidum (strain Z-1310 /
DSM 6724) GN=rplS PE=3 SV=1
Length = 118
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 52/78 (66%), Gaps = 6/78 (7%)
Query: 232 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTT 290
I+Q L+KE + +++IP+I PG V++ I E +K R+ +G+VIA+++ GI T
Sbjct: 4 IIQNLEKEYM-----KKDIPEIWPGDTVRVHYRIVEGDKERIQVYEGVVIAKKHGGIRET 58
Query: 291 FRLRRLVAGVGVESLFPL 308
+R++V GVGVE +FPL
Sbjct: 59 ITVRKVVQGVGVERIFPL 76
>sp|A6WXG3|RL19_OCHA4 50S ribosomal protein L19 OS=Ochrobactrum anthropi (strain ATCC
49188 / DSM 6882 / NCTC 12168) GN=rplS PE=3 SV=1
Length = 145
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
I++ L+ E ++ +R++PD +PG V+++V + E R RV +G+ IAR AG++
Sbjct: 3 DIIRQLEAEQAAKIEEKRKLPDFQPGDTVRVQVRVTEGTRTRVQAYEGVCIARSGAGLNE 62
Query: 290 TFRLRRLVAGVGVESLFPL 308
F +R++ G GVE +FP+
Sbjct: 63 NFTVRKISYGEGVERVFPV 81
>sp|B5YFD4|RL19_DICT6 50S ribosomal protein L19 OS=Dictyoglomus thermophilum (strain ATCC
35947 / DSM 3960 / H-6-12) GN=rplS PE=3 SV=1
Length = 118
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 52/78 (66%), Gaps = 6/78 (7%)
Query: 232 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTT 290
I+Q L+KE + +++IP+I PG V++ I E +K R+ +G+VIA+++ GI T
Sbjct: 4 IIQNLEKEYM-----KKDIPEIWPGDTVRVHYRIVEGDKERIQVYEGVVIAKKHGGIRET 58
Query: 291 FRLRRLVAGVGVESLFPL 308
+R++V GVGVE +FPL
Sbjct: 59 ITVRKVVQGVGVERIFPL 76
>sp|P66079|RL19_BRUSU 50S ribosomal protein L19 OS=Brucella suis biovar 1 (strain 1330)
GN=rplS PE=3 SV=1
Length = 145
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
I++ L+ E ++ +R++PD +PG V+++V + E R RV +G+ IAR AG++
Sbjct: 3 DIIRQLEAEQAAKIEEKRKLPDFQPGDTVRVQVRVTEGTRTRVQAYEGVCIARSGAGLNE 62
Query: 290 TFRLRRLVAGVGVESLFPL 308
F +R++ G GVE +FP+
Sbjct: 63 NFTVRKISYGEGVERVFPV 81
>sp|B0CIF8|RL19_BRUSI 50S ribosomal protein L19 OS=Brucella suis (strain ATCC 23445 /
NCTC 10510) GN=rplS PE=3 SV=1
Length = 145
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
I++ L+ E ++ +R++PD +PG V+++V + E R RV +G+ IAR AG++
Sbjct: 3 DIIRQLEAEQAAKIEEKRKLPDFQPGDTVRVQVRVTEGTRTRVQAYEGVCIARSGAGLNE 62
Query: 290 TFRLRRLVAGVGVESLFPL 308
F +R++ G GVE +FP+
Sbjct: 63 NFTVRKISYGEGVERVFPV 81
>sp|A5VSN4|RL19_BRUO2 50S ribosomal protein L19 OS=Brucella ovis (strain ATCC 25840 /
63/290 / NCTC 10512) GN=rplS PE=3 SV=1
Length = 145
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
I++ L+ E ++ +R++PD +PG V+++V + E R RV +G+ IAR AG++
Sbjct: 3 DIIRQLEAEQAAKIEEKRKLPDFQPGDTVRVQVRVTEGTRTRVQAYEGVCIARSGAGLNE 62
Query: 290 TFRLRRLVAGVGVESLFPL 308
F +R++ G GVE +FP+
Sbjct: 63 NFTVRKISYGEGVERVFPV 81
>sp|P66078|RL19_BRUME 50S ribosomal protein L19 OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=rplS PE=3 SV=1
Length = 145
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
I++ L+ E ++ +R++PD +PG V+++V + E R RV +G+ IAR AG++
Sbjct: 3 DIIRQLEAEQAAKIEEKRKLPDFQPGDTVRVQVRVTEGTRTRVQAYEGVCIARSGAGLNE 62
Query: 290 TFRLRRLVAGVGVESLFPL 308
F +R++ G GVE +FP+
Sbjct: 63 NFTVRKISYGEGVERVFPV 81
>sp|C0RFF2|RL19_BRUMB 50S ribosomal protein L19 OS=Brucella melitensis biotype 2 (strain
ATCC 23457) GN=rplS PE=3 SV=1
Length = 145
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
I++ L+ E ++ +R++PD +PG V+++V + E R RV +G+ IAR AG++
Sbjct: 3 DIIRQLEAEQAAKIEEKRKLPDFQPGDTVRVQVRVTEGTRTRVQAYEGVCIARSGAGLNE 62
Query: 290 TFRLRRLVAGVGVESLFPL 308
F +R++ G GVE +FP+
Sbjct: 63 NFTVRKISYGEGVERVFPV 81
>sp|A9M8P3|RL19_BRUC2 50S ribosomal protein L19 OS=Brucella canis (strain ATCC 23365 /
NCTC 10854) GN=rplS PE=3 SV=1
Length = 145
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
I++ L+ E ++ +R++PD +PG V+++V + E R RV +G+ IAR AG++
Sbjct: 3 DIIRQLEAEQAAKIEEKRKLPDFQPGDTVRVQVRVTEGTRTRVQAYEGVCIARSGAGLNE 62
Query: 290 TFRLRRLVAGVGVESLFPL 308
F +R++ G GVE +FP+
Sbjct: 63 NFTVRKISYGEGVERVFPV 81
>sp|Q57AY9|RL19_BRUAB 50S ribosomal protein L19 OS=Brucella abortus biovar 1 (strain
9-941) GN=rplS PE=3 SV=1
Length = 145
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
I++ L+ E ++ +R++PD +PG V+++V + E R RV +G+ IAR AG++
Sbjct: 3 DIIRQLEAEQAAKIEEKRKLPDFQPGDTVRVQVRVTEGTRTRVQAYEGVCIARSGAGLNE 62
Query: 290 TFRLRRLVAGVGVESLFPL 308
F +R++ G GVE +FP+
Sbjct: 63 NFTVRKISYGEGVERVFPV 81
>sp|Q2YLP6|RL19_BRUA2 50S ribosomal protein L19 OS=Brucella abortus (strain 2308) GN=rplS
PE=3 SV=1
Length = 145
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
I++ L+ E ++ +R++PD +PG V+++V + E R RV +G+ IAR AG++
Sbjct: 3 DIIRQLEAEQAAKIEEKRKLPDFQPGDTVRVQVRVTEGTRTRVQAYEGVCIARSGAGLNE 62
Query: 290 TFRLRRLVAGVGVESLFPL 308
F +R++ G GVE +FP+
Sbjct: 63 NFTVRKISYGEGVERVFPV 81
>sp|B2S861|RL19_BRUA1 50S ribosomal protein L19 OS=Brucella abortus (strain S19) GN=rplS
PE=3 SV=1
Length = 145
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
I++ L+ E ++ +R++PD +PG V+++V + E R RV +G+ IAR AG++
Sbjct: 3 DIIRQLEAEQAAKIEEKRKLPDFQPGDTVRVQVRVTEGTRTRVQAYEGVCIARSGAGLNE 62
Query: 290 TFRLRRLVAGVGVESLFPL 308
F +R++ G GVE +FP+
Sbjct: 63 NFTVRKISYGEGVERVFPV 81
>sp|Q3A2E9|RL19_PELCD 50S ribosomal protein L19 OS=Pelobacter carbinolicus (strain DSM
2380 / Gra Bd 1) GN=rplS PE=3 SV=1
Length = 115
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 233 MQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTF 291
M I+D+ +E +K ++IP K G +++ V I E +KRR+ +G+ I R N G+ +TF
Sbjct: 1 MNIIDRLEMEQMK--KDIPAFKAGDTLRVHVKIVEGDKRRIQVFQGVCIKRHNKGLGSTF 58
Query: 292 RLRRLVAGVGVESLFPL 308
+R++ G+GVE +FPL
Sbjct: 59 TVRKISDGMGVERVFPL 75
>sp|B4RCC6|RL19_PHEZH 50S ribosomal protein L19 OS=Phenylobacterium zucineum (strain
HLK1) GN=rplS PE=3 SV=1
Length = 133
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
++++ L KE + + +QR++P+ +PG V++ V I E R RV +G+ IAR G+
Sbjct: 2 NVIEQLRKEEADRLLAQRKVPEFRPGDTVRVNVRIKEGDRERVQAYEGVCIARAGQGVDE 61
Query: 290 TFRLRRLVAGVGVESLFPL 308
F +R++ G GVE +FP+
Sbjct: 62 NFTVRKISFGEGVERVFPI 80
>sp|Q9CH65|RL19_LACLA 50S ribosomal protein L19 OS=Lactococcus lactis subsp. lactis
(strain IL1403) GN=rplS PE=3 SV=1
Length = 114
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 239 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLV 297
E++ + + +IPD +PG V++ + E R R+ +G+VIAR+N+GI+ T+ +R++
Sbjct: 5 ESINAAQLRTDIPDFRPGDTVRVHAKVVEGTRERIQMFEGVVIARKNSGINETYTVRKIS 64
Query: 298 AGVGVESLFPL 308
GVGVE +FP+
Sbjct: 65 NGVGVERIFPV 75
>sp|Q02ZX9|RL19_LACLS 50S ribosomal protein L19 OS=Lactococcus lactis subsp. cremoris
(strain SK11) GN=rplS PE=3 SV=1
Length = 114
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 239 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLV 297
E++ + + +IPD +PG V++ + E R R+ +G+VIAR+N+GI+ T+ +R++
Sbjct: 5 ESINAAQLRTDIPDFRPGDTVRVHAKVVEGTRERIQIFEGVVIARKNSGINETYTVRKIS 64
Query: 298 AGVGVESLFPL 308
GVGVE +FP+
Sbjct: 65 NGVGVERIFPV 75
>sp|A2RLS5|RL19_LACLM 50S ribosomal protein L19 OS=Lactococcus lactis subsp. cremoris
(strain MG1363) GN=rplS PE=3 SV=1
Length = 114
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 239 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLV 297
E++ + + +IPD +PG V++ + E R R+ +G+VIAR+N+GI+ T+ +R++
Sbjct: 5 ESINAAQLRTDIPDFRPGDTVRVHAKVVEGTRERIQIFEGVVIARKNSGINETYTVRKIS 64
Query: 298 AGVGVESLFPL 308
GVGVE +FP+
Sbjct: 65 NGVGVERIFPV 75
>sp|B1I2N2|RL19_DESAP 50S ribosomal protein L19 OS=Desulforudis audaxviator (strain
MP104C) GN=rplS PE=3 SV=1
Length = 115
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 249 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFP 307
+IP+ +PG V++ V + E +R R+ +G+VI RR G+S TF +RR+ GVGVE FP
Sbjct: 15 DIPEFRPGDTVRVHVKVVEGERQRIQVFEGVVIRRRGGGVSETFTVRRVSYGVGVERTFP 74
Query: 308 L 308
L
Sbjct: 75 L 75
>sp|B0T3B9|RL19_CAUSK 50S ribosomal protein L19 OS=Caulobacter sp. (strain K31) GN=rplS
PE=3 SV=1
Length = 131
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 229 ARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGI 287
A +I++ L++E + + + R IP+ +PG +++ V I E +R RV +G+ IAR G+
Sbjct: 2 AANIIKELEREEAQRLLAARAIPEFEPGDTLRVNVRIKEGERERVQAYEGVCIARSGGGV 61
Query: 288 STTFRLRRLVAGVGVESLFPL 308
+F +R++ G GVE LFPL
Sbjct: 62 HESFTVRKISFGEGVERLFPL 82
>sp|B6JAQ7|RL19_OLICO 50S ribosomal protein L19 OS=Oligotropha carboxidovorans (strain
ATCC 49405 / DSM 1227 / OM5) GN=rplS PE=3 SV=1
Length = 131
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
+++Q L+KE ++ + + + IPD PG V + V + E R RV +G+ I R GI+
Sbjct: 2 NLIQELEKEQLDKLATGKTIPDFGPGDTVTVNVKVKEGDRTRVQAYEGVCIGRNGGGINE 61
Query: 290 TFRLRRLVAGVGVESLFPL 308
+F +R++ G GVE +FP+
Sbjct: 62 SFTVRKISYGEGVERVFPI 80
>sp|Q83G66|RL19_TROWT 50S ribosomal protein L19 OS=Tropheryma whipplei (strain Twist)
GN=rplS PE=3 SV=1
Length = 115
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 233 MQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTF 291
M LD A++ + + +IPD PG V++ V I E R RV +G+VIARR G+ TF
Sbjct: 1 MHALD--ALDALSIKADIPDFSPGDTVRVYVNITEGDRSRVQVFQGVVIARRGFGVRQTF 58
Query: 292 RLRRLVAGVGVESLFPL 308
+R++ VGVE +FPL
Sbjct: 59 TVRKISFQVGVERIFPL 75
>sp|Q83I04|RL19_TROW8 50S ribosomal protein L19 OS=Tropheryma whipplei (strain TW08/27)
GN=rplS PE=3 SV=1
Length = 115
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 233 MQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTF 291
M LD A++ + + +IPD PG V++ V I E R RV +G+VIARR G+ TF
Sbjct: 1 MHALD--ALDALSIKADIPDFSPGDTVRVYVNITEGDRSRVQVFQGVVIARRGFGVRQTF 58
Query: 292 RLRRLVAGVGVESLFPL 308
+R++ VGVE +FPL
Sbjct: 59 TVRKISFQVGVERIFPL 75
>sp|A7IIA9|RL19_XANP2 50S ribosomal protein L19 OS=Xanthobacter autotrophicus (strain
ATCC BAA-1158 / Py2) GN=rplS PE=3 SV=1
Length = 140
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
+I+Q L+ E + +R IPD +PG + + V + E +R RV +G+ IAR G++
Sbjct: 2 NIIQTLEAEQAAKLAEKRAIPDFQPGDTIIVNVKVVEGERSRVQAYEGVCIARSGGGLNE 61
Query: 290 TFRLRRLVAGVGVESLFPL 308
+F +R++ G GVE +FP+
Sbjct: 62 SFTVRKISYGEGVERVFPV 80
>sp|Q49X27|RL19_STAS1 50S ribosomal protein L19 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=rplS
PE=3 SV=1
Length = 116
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 239 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLV 297
EAV + + ++P +PG +++ V I E R R+ +G+VI RR GIS TF +R++
Sbjct: 8 EAVTQSQLRTDLPSFRPGDTLKVHVRIIEGTRERIQVFEGVVIKRRGGGISETFTVRKIS 67
Query: 298 AGVGVESLFPL 308
+GVGVE FPL
Sbjct: 68 SGVGVERTFPL 78
>sp|P58167|RL19_CAUCR 50S ribosomal protein L19 OS=Caulobacter crescentus (strain ATCC
19089 / CB15) GN=rplS PE=3 SV=1
Length = 131
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
+I+ L++E + + R IPD +PG +++ V I E +R RV +G+ IAR G+
Sbjct: 4 NIIAQLEQEESARLLAARAIPDFRPGDTLRVNVKIKEGERERVQAYEGVCIARAGTGVHE 63
Query: 290 TFRLRRLVAGVGVESLFPL 308
+F +R++ G GVE LFPL
Sbjct: 64 SFTVRKISFGEGVERLFPL 82
>sp|Q8UBZ5|RL19_AGRT5 50S ribosomal protein L19 OS=Agrobacterium tumefaciens (strain C58
/ ATCC 33970) GN=rplS PE=3 SV=1
Length = 179
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGIST 289
+I+Q L+ E ++++R +P+ PG +++ V + E N+ RV +G+ IAR G+S
Sbjct: 3 NIIQQLEAEQAAKIEAKRTLPEFSPGDTLRVNVRVTEGNRTRVQAYEGVCIARSGGGLSE 62
Query: 290 TFRLRRLVAGVGVESLFPL 308
+F +R++ G GVE +FP+
Sbjct: 63 SFTVRKISYGEGVERVFPI 81
>sp|A3DDH1|RL19_CLOTH 50S ribosomal protein L19 OS=Clostridium thermocellum (strain ATCC
27405 / DSM 1237) GN=rplS PE=3 SV=1
Length = 114
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 239 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLV 297
+A+E + ++++PD G V++ V + E N+ R+ +G VIA++ +GIS TF +R++
Sbjct: 5 KAIEQEQLKKDVPDFSIGDYVRVNVKVKEGNRERIQAFEGTVIAKKGSGISETFTVRKIS 64
Query: 298 AGVGVESLFPL 308
GVGVE +FP+
Sbjct: 65 YGVGVERIFPV 75
>sp|P66083|RL19_STAAN 50S ribosomal protein L19 OS=Staphylococcus aureus (strain N315)
GN=rplS PE=1 SV=1
Length = 116
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 239 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLV 297
EAV + + ++P +PG +++ V I E R R+ +GIVI RR G+S TF +R++
Sbjct: 8 EAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGIVIKRRGGGVSETFTVRKIS 67
Query: 298 AGVGVESLFPL 308
+GVGVE FPL
Sbjct: 68 SGVGVERTFPL 78
>sp|P66082|RL19_STAAM 50S ribosomal protein L19 OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=rplS PE=3 SV=1
Length = 116
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 239 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLV 297
EAV + + ++P +PG +++ V I E R R+ +GIVI RR G+S TF +R++
Sbjct: 8 EAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGIVIKRRGGGVSETFTVRKIS 67
Query: 298 AGVGVESLFPL 308
+GVGVE FPL
Sbjct: 68 SGVGVERTFPL 78
>sp|A5ISC6|RL19_STAA9 50S ribosomal protein L19 OS=Staphylococcus aureus (strain JH9)
GN=rplS PE=3 SV=1
Length = 116
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 239 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLV 297
EAV + + ++P +PG +++ V I E R R+ +GIVI RR G+S TF +R++
Sbjct: 8 EAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGIVIKRRGGGVSETFTVRKIS 67
Query: 298 AGVGVESLFPL 308
+GVGVE FPL
Sbjct: 68 SGVGVERTFPL 78
>sp|A6U160|RL19_STAA2 50S ribosomal protein L19 OS=Staphylococcus aureus (strain JH1)
GN=rplS PE=3 SV=1
Length = 116
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 239 EAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLV 297
EAV + + ++P +PG +++ V I E R R+ +GIVI RR G+S TF +R++
Sbjct: 8 EAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGIVIKRRGGGVSETFTVRKIS 67
Query: 298 AGVGVESLFPL 308
+GVGVE FPL
Sbjct: 68 SGVGVERTFPL 78
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,297,742
Number of Sequences: 539616
Number of extensions: 3972622
Number of successful extensions: 11935
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 10837
Number of HSP's gapped (non-prelim): 774
length of query: 308
length of database: 191,569,459
effective HSP length: 117
effective length of query: 191
effective length of database: 128,434,387
effective search space: 24530967917
effective search space used: 24530967917
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)