Query 021720
Match_columns 308
No_of_seqs 132 out of 877
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 08:18:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021720.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021720hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_P 50S ribosomal protein L 99.9 5.3E-27 1.8E-31 193.5 7.9 73 231-308 2-75 (114)
2 2zjr_M 50S ribosomal protein L 99.9 1.9E-27 6.5E-32 206.6 3.5 78 230-308 5-83 (166)
3 3v2d_T 50S ribosomal protein L 99.9 4.1E-26 1.4E-30 195.1 9.9 64 245-308 14-78 (146)
4 3bbo_R Ribosomal protein L19; 99.9 7.6E-28 2.6E-32 217.7 -8.5 80 229-308 119-198 (233)
5 2ftc_K 39S ribosomal protein L 99.9 1.2E-24 4E-29 175.5 8.6 59 250-308 1-59 (98)
6 3cnr_A Type IV fimbriae assemb 62.1 15 0.0005 29.6 5.6 46 252-303 41-86 (117)
7 2eif_A IF-5A, protein (eukaryo 55.6 12 0.00041 30.7 4.2 47 250-307 13-65 (136)
8 4fm4_B NitrIle hydratase beta 53.3 6.4 0.00022 34.9 2.3 34 251-284 117-154 (206)
9 3d6x_A (3R)-hydroxymyristoyl-[ 53.1 12 0.00042 29.0 3.6 29 252-280 100-128 (146)
10 2gll_A FABZ, (3R)-hydroxymyris 48.5 15 0.00052 30.2 3.7 29 252-280 124-152 (171)
11 4h4g_A (3R)-hydroxymyristoyl-[ 47.4 14 0.00049 30.4 3.4 28 252-279 110-137 (160)
12 2zzd_A Thiocyanate hydrolase s 44.2 11 0.00038 31.6 2.2 36 249-284 33-72 (126)
13 2kbn_A Conserved protein; nucl 43.5 17 0.00057 28.3 3.0 28 249-276 57-85 (109)
14 2d6f_A Glutamyl-tRNA(Gln) amid 41.7 29 0.00099 33.7 5.0 45 252-304 15-61 (435)
15 2e6z_A Transcription elongatio 41.2 23 0.0008 25.1 3.3 29 250-284 5-33 (59)
16 1u1z_A (3R)-hydroxymyristoyl-[ 40.6 21 0.00073 29.0 3.4 29 252-280 120-148 (168)
17 1ugp_B NitrIle hydratase beta 37.7 15 0.00052 33.0 2.2 35 250-284 136-174 (226)
18 4i83_A 3-hydroxyacyl-[acyl-car 37.5 26 0.00089 28.0 3.4 28 253-280 107-134 (152)
19 3qyh_B CO-type nitrIle hydrata 37.5 16 0.00054 32.8 2.3 36 249-284 127-166 (219)
20 4b3f_X DNA-binding protein smu 37.1 58 0.002 31.5 6.3 34 249-285 75-110 (646)
21 1jb7_A Telomere-binding protei 36.5 17 0.00058 35.7 2.5 42 248-295 108-150 (495)
22 3hht_B NitrIle hydratase beta 36.3 16 0.00056 32.9 2.2 36 249-284 138-177 (229)
23 1z6b_A Pffabz, fatty acid synt 35.6 30 0.001 27.2 3.4 28 252-279 106-135 (154)
24 2f41_A Transcription factor FA 32.8 51 0.0017 24.8 4.2 28 252-279 72-101 (121)
25 1nz9_A Transcription antitermi 32.5 1.1E+02 0.0039 20.9 5.6 27 252-284 4-30 (58)
26 1bkb_A Translation initiation 29.5 1E+02 0.0036 24.9 5.8 51 250-307 11-63 (136)
27 3e0e_A Replication protein A; 29.0 50 0.0017 24.9 3.6 26 252-277 63-88 (97)
28 1qzg_A Protection of telomeres 28.7 32 0.0011 30.2 2.7 33 248-286 95-128 (187)
29 2vc8_A Enhancer of mRNA-decapp 28.1 1.2E+02 0.0042 23.9 5.7 37 254-297 7-43 (84)
30 1iq6_A (R)-hydratase, (R)-spec 27.7 54 0.0019 24.2 3.5 16 252-267 87-102 (134)
31 1zq1_A Glutamyl-tRNA(Gln) amid 26.7 53 0.0018 31.9 4.1 49 252-304 11-61 (438)
32 2rm4_A CG6311-PB, DM EDC3; enh 25.7 1E+02 0.0035 25.2 5.0 38 254-300 10-48 (103)
33 3j21_J 50S ribosomal protein L 25.4 1.1E+02 0.0038 25.9 5.3 37 248-284 51-87 (141)
34 3cpf_A Eukaryotic translation 24.7 1.3E+02 0.0046 24.5 5.6 49 252-307 11-61 (138)
35 1iz6_A Initiation factor 5A; S 24.6 1.3E+02 0.0045 24.6 5.6 51 250-307 9-61 (138)
36 3a8g_B NitrIle hydratase subun 24.0 32 0.0011 30.6 1.9 35 250-284 120-159 (212)
37 1vq8_K 50S ribosomal protein L 23.8 94 0.0032 26.0 4.6 36 248-283 42-77 (132)
38 2k52_A Uncharacterized protein 23.5 55 0.0019 23.5 2.8 22 252-273 45-67 (80)
39 3hks_A EIF-5A-2, eukaryotic tr 23.4 1.5E+02 0.0053 25.3 6.0 49 252-307 33-83 (167)
40 2f3x_A Transcription factor FA 23.0 80 0.0027 25.6 3.9 28 252-279 108-137 (157)
41 3esi_A Uncharacterized protein 22.9 57 0.0019 26.6 3.0 21 251-271 76-96 (129)
42 3bnv_A CJ0977; virulence facto 22.9 92 0.0031 24.9 4.2 28 252-279 99-127 (152)
43 4he6_A Peptidase family U32; u 22.7 53 0.0018 24.3 2.6 36 270-306 3-40 (89)
44 1wi5_A RRP5 protein homolog; S 22.4 64 0.0022 24.9 3.1 33 252-290 67-100 (119)
45 3r8s_K 50S ribosomal protein L 21.9 1E+02 0.0036 25.4 4.4 33 252-284 32-67 (122)
46 2p9r_A Alpha-2-M, alpha-2-macr 20.8 2.5E+02 0.0086 20.5 7.0 19 249-267 9-27 (102)
47 3p8b_B Transcription antitermi 20.5 1.7E+02 0.0059 23.4 5.4 42 250-299 89-130 (152)
No 1
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=99.94 E-value=5.3e-27 Score=193.54 Aligned_cols=73 Identities=36% Similarity=0.750 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCCcceEEEEeccCCeeeEEEeeC
Q 021720 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL 308 (308)
Q Consensus 231 nLM~iLEKeemEe~r~KrdIPeFkpGDTVrV~~kI~E-nKeRiQ~FeGVVIARRNrGLnSTFTLRKIs~GVGVERiFPL 308 (308)
++|+.||++++ ++++|+|+|||||+|+++|.| +|+|+|.|+|+||+++|+|+++||||||+++|+||||+|||
T Consensus 2 ~~i~~~e~~~~-----~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl 75 (114)
T 3r8s_P 2 NIIKQLEQEQM-----KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQT 75 (114)
T ss_dssp CHHHHHHGGGC-----CSCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEET
T ss_pred hHHHHHHHHHh-----ccCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEec
Confidence 35565555433 689999999999999999999 89999999999999999999999999999999999999997
No 2
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=99.93 E-value=1.9e-27 Score=206.62 Aligned_cols=78 Identities=31% Similarity=0.563 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCCcceEEEEeccCCeeeEEEeeC
Q 021720 230 RHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL 308 (308)
Q Consensus 230 ~nLM~iLEKeemEe~r~KrdIPeFkpGDTVrV~~kI~E-nKeRiQ~FeGVVIARRNrGLnSTFTLRKIs~GVGVERiFPL 308 (308)
+++|+.|+++++.++ .++++|+|+|||||+|+++|.| +|+|+|.|+||||+++|+|+++||||||+++|+||||+|||
T Consensus 5 M~li~~le~eqlk~l-~~~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~Fpl 83 (166)
T 2zjr_M 5 IKINRGELLRGIEQD-HTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPF 83 (166)
T ss_dssp CCCCHHHHHHHTTGG-GCCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEET
T ss_pred HHHHHHHHHHHHhhc-cccCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEEecCCeeEEEEEec
Confidence 467888888877654 4689999999999999999999 89999999999999999999999999999999999999997
No 3
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=99.93 E-value=4.1e-26 Score=195.05 Aligned_cols=64 Identities=39% Similarity=0.774 Sum_probs=61.8
Q ss_pred hcCCCCCCCCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCCcceEEEEeccCCeeeEEEeeC
Q 021720 245 KSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL 308 (308)
Q Consensus 245 r~KrdIPeFkpGDTVrV~~kI~E-nKeRiQ~FeGVVIARRNrGLnSTFTLRKIs~GVGVERiFPL 308 (308)
+.++++|+|+|||||+|+++|.| +|+|+|.|+||||+++|+|+++||||||+++|+||||+|||
T Consensus 14 ~~~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVRkis~gvGVEr~Fpl 78 (146)
T 3v2d_T 14 YVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPL 78 (146)
T ss_dssp TCCCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEET
T ss_pred HhhccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEec
Confidence 44789999999999999999999 89999999999999999999999999999999999999997
No 4
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.91 E-value=7.6e-28 Score=217.71 Aligned_cols=80 Identities=56% Similarity=0.917 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEecCCCcccceEEEEEEEEecCCCcceEEEEeccCCeeeEEEeeC
Q 021720 229 ARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL 308 (308)
Q Consensus 229 a~nLM~iLEKeemEe~r~KrdIPeFkpGDTVrV~~kI~EnKeRiQ~FeGVVIARRNrGLnSTFTLRKIs~GVGVERiFPL 308 (308)
+.++|+.|+++++++.+.++++|+|++||||+|+++|.|+|+|+|.|+||||+++|+|+++|||||||++|+||||+|||
T Consensus 119 ~~~iM~~L~re~ie~~q~kkdiPeFr~GDtV~V~vkI~E~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~FpL 198 (233)
T 3bbo_R 119 LGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPL 198 (233)
T ss_dssp --CCSSSCSTTHHHHTTCCSCCSSSCCCSCCCCCCCBCCCSSCCSCCBCCCCCSCBCCCSSSCBCBCCCCCSTTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHhhccCCCccCCCCEEEEEEEeccCcceecceEEEEEEEeCCCCCceEEEEEecCCceEEEEEec
Confidence 34889999999999999899999999999999999999999999999999999999999999999999999999999997
No 5
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=99.91 E-value=1.2e-24 Score=175.51 Aligned_cols=59 Identities=36% Similarity=0.617 Sum_probs=58.1
Q ss_pred CCCCCCCCEEEEEEEecCCCcccceEEEEEEEEecCCCcceEEEEeccCCeeeEEEeeC
Q 021720 250 IPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL 308 (308)
Q Consensus 250 IPeFkpGDTVrV~~kI~EnKeRiQ~FeGVVIARRNrGLnSTFTLRKIs~GVGVERiFPL 308 (308)
+|+|+|||||+|+++|.++|+|+|.|+|+||+++|+|+++||||||+++|+||||+|||
T Consensus 1 iP~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl 59 (98)
T 2ftc_K 1 IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFEL 59 (98)
T ss_pred CCccCCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEEEEEEeccCceEEEEEec
Confidence 69999999999999999999999999999999999999999999999999999999997
No 6
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=62.13 E-value=15 Score=29.64 Aligned_cols=46 Identities=30% Similarity=0.434 Sum_probs=32.6
Q ss_pred CCCCCCEEEEEEEecCCCcccceEEEEEEEEecCCCcceEEEEeccCCeeeE
Q 021720 252 DIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVE 303 (308)
Q Consensus 252 eFkpGDTVrV~~kI~EnKeRiQ~FeGVVIARRNrGLnSTFTLRKIs~GVGVE 303 (308)
.+.+||.|.+.+.+++..+++ ..+|.|+.++-.|-.. +--.|+||+
T Consensus 41 ~~~~G~~V~l~l~Lp~~~~~i-~~~GkVvWi~p~~~~~-----~~p~G~GVq 86 (117)
T 3cnr_A 41 RYMLGDEVFLLLTLPDSSERL-PVAGKVIWTTPAGAQG-----NRAAGIGVQ 86 (117)
T ss_dssp CCCTTCEEEEEEECTTCSCEE-EEEEEEEEEECC-----------CCEEEEE
T ss_pred ccCCCCEEEEEEEcCCCCceE-EEEEEEEEecCCCCCC-----CCCCceEEE
Confidence 589999999999998865554 4569999998666432 236788886
No 7
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=55.63 E-value=12 Score=30.68 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=30.6
Q ss_pred CCCCCCCCEEEEEEEecCCCcccceEEEEEEEEe----cC-CC-cceEEEEeccCCeeeEEEee
Q 021720 250 IPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARR----NA-GI-STTFRLRRLVAGVGVESLFP 307 (308)
Q Consensus 250 IPeFkpGDTVrV~~kI~EnKeRiQ~FeGVVIARR----Nr-GL-nSTFTLRKIs~GVGVERiFP 307 (308)
.++|+.|++|.+. + +.|+ |+... |+ |- --...+|++..|.-+|++|+
T Consensus 13 ~~~lr~G~~I~~~-----g----~p~~--V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~ 65 (136)
T 2eif_A 13 VGSLKVGQYVMID-----G----VPCE--IVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAP 65 (136)
T ss_dssp GGGCCTTSEEEET-----T----EEEE--EEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEE
T ss_pred HHHCcCCCEEEEC-----C----EEEE--EEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEec
Confidence 5799999999772 1 1222 22211 32 31 13456999999999999997
No 8
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=53.28 E-value=6.4 Score=34.86 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=27.5
Q ss_pred CCCCCCCEEEEEEEecCCCcccceE----EEEEEEEec
Q 021720 251 PDIKPGYIVQLKVVIPENKRRVSTL----KGIVIARRN 284 (308)
Q Consensus 251 PeFkpGDTVrV~~kI~EnKeRiQ~F----eGVVIARRN 284 (308)
|.|++||.|+|.-..+..-.|+..| +|+|++.+|
T Consensus 117 ~~F~vGd~Vrv~~~~~~gHtRlP~Y~rg~~G~I~~~~g 154 (206)
T 4fm4_B 117 GGFKLGQRVHVKNEFVPGHTRFPAYIRGKAGVVVGISP 154 (206)
T ss_dssp TCCCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEECC
T ss_pred CCCcCCCEEEeCCCCCCCcccccHhhcCCeeEEEEEec
Confidence 6799999999986665567777766 799998875
No 9
>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; FABZ, hot DOG fold, dehydratase, lipid biosynthesis, lipid synthesis, lyase; HET: MSE; 2.59A {Campylobacter jejuni subsp}
Probab=53.05 E-value=12 Score=29.00 Aligned_cols=29 Identities=17% Similarity=0.410 Sum_probs=23.1
Q ss_pred CCCCCCEEEEEEEecCCCcccceEEEEEE
Q 021720 252 DIKPGYIVQLKVVIPENKRRVSTLKGIVI 280 (308)
Q Consensus 252 eFkpGDTVrV~~kI~EnKeRiQ~FeGVVI 280 (308)
..+|||++.+.+++.+.+.++-.|++.+.
T Consensus 100 pV~pGd~l~~~~~v~~~~~~~~~~~~~~~ 128 (146)
T 3d6x_A 100 PVRPGDRLDYEMSVVKNRGNMWIFKGQAF 128 (146)
T ss_dssp CCCTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEeeCCEEEEEEEEE
Confidence 36889999999999886666777777664
No 10
>2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase; lyase; 2.20A {Helicobacter pylori} PDB: 2glm_A* 2glp_A* 2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A* 3doy_A* 3doz_A* 3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A*
Probab=48.45 E-value=15 Score=30.21 Aligned_cols=29 Identities=14% Similarity=0.276 Sum_probs=23.7
Q ss_pred CCCCCCEEEEEEEecCCCcccceEEEEEE
Q 021720 252 DIKPGYIVQLKVVIPENKRRVSTLKGIVI 280 (308)
Q Consensus 252 eFkpGDTVrV~~kI~EnKeRiQ~FeGVVI 280 (308)
..+|||++++.+++.+.+.++-.|++.+.
T Consensus 124 pV~PGD~L~i~v~v~~~~~~~~~~~~~~~ 152 (171)
T 2gll_A 124 PVTPGDRLEYHLEVLKHKGMIWQVGGTAQ 152 (171)
T ss_dssp CCCTTCEEEEEEEEEEESSSEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEEeCCEEEEEEEEE
Confidence 46789999999999886667778888765
No 11
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis}
Probab=47.37 E-value=14 Score=30.39 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=23.0
Q ss_pred CCCCCCEEEEEEEecCCCcccceEEEEE
Q 021720 252 DIKPGYIVQLKVVIPENKRRVSTLKGIV 279 (308)
Q Consensus 252 eFkpGDTVrV~~kI~EnKeRiQ~FeGVV 279 (308)
.+.|||++++++++...+.++-.|+|.+
T Consensus 110 ~V~PGd~L~i~v~~~~~~~~~~~~~~~~ 137 (160)
T 4h4g_A 110 VVEPGDQLILNVTFERYIRGIWKFKAVA 137 (160)
T ss_dssp CCCTTCEEEEEEEEEEEETTEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEeeCCEEEEEEEE
Confidence 4678999999999887777788888764
No 12
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=44.15 E-value=11 Score=31.56 Aligned_cols=36 Identities=17% Similarity=0.091 Sum_probs=27.8
Q ss_pred CCCCCCCCCEEEEEEEecCCCcccceE----EEEEEEEec
Q 021720 249 EIPDIKPGYIVQLKVVIPENKRRVSTL----KGIVIARRN 284 (308)
Q Consensus 249 dIPeFkpGDTVrV~~kI~EnKeRiQ~F----eGVVIARRN 284 (308)
.-|.|.+||.|+|.-..+..-.|+..| +|+|.+..+
T Consensus 33 ~~prF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~~G 72 (126)
T 2zzd_A 33 GKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVY 72 (126)
T ss_dssp CSCSSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEEE
T ss_pred CCCccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEEec
Confidence 468899999999986555567787776 688877664
No 13
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=43.52 E-value=17 Score=28.27 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=21.4
Q ss_pred CCCCCCCCCEEEEE-EEecCCCcccceEE
Q 021720 249 EIPDIKPGYIVQLK-VVIPENKRRVSTLK 276 (308)
Q Consensus 249 dIPeFkpGDTVrV~-~kI~EnKeRiQ~Fe 276 (308)
+.+.|.+||+|+|. .++.+-+.+.|.--
T Consensus 57 ~~~~~~~G~~V~i~n~~v~~~~G~~~L~v 85 (109)
T 2kbn_A 57 ELPLLEQGESYLLRSVVVGEYNDRFQVQV 85 (109)
T ss_dssp CCCCCCTTCEEEEEEEEEEEETTEEEEEE
T ss_pred cccccCCCCEEEEEEEEEEEECCEEEEEE
Confidence 46899999999998 78777555555543
No 14
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=41.66 E-value=29 Score=33.65 Aligned_cols=45 Identities=24% Similarity=0.381 Sum_probs=31.0
Q ss_pred CCCCCCEEEEEEEecCCCcccceEEEEEEEEecCCCcceEEEEecc--CCeeeEE
Q 021720 252 DIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLV--AGVGVES 304 (308)
Q Consensus 252 eFkpGDTVrV~~kI~EnKeRiQ~FeGVVIARRNrGLnSTFTLRKIs--~GVGVER 304 (308)
.+.+||.|+|.. +. +.|+||+|-+...+ +....|-|.. +++||++
T Consensus 15 ~~~~gd~~~~~~-----~~--~~~~g~~~~~~~~~-~~~~~~~kl~~gyn~g~~~ 61 (435)
T 2d6f_A 15 SIDVGDMVLVEK-----PD--VTYEGMVLDRADDA-DDRHIVLKLENGYNIGVEI 61 (435)
T ss_dssp TCCTTCEEEEEC-----SS--CEEEEEECCCCTTS-CSSEEEEECTTSCEEEEEC
T ss_pred CCCCCCEEEEEE-----CC--eEEEEEEecCcccC-CCCeEEEEccCceeeeecc
Confidence 477899999873 22 89999999766544 3445555665 4566654
No 15
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.25 E-value=23 Score=25.13 Aligned_cols=29 Identities=17% Similarity=0.347 Sum_probs=22.5
Q ss_pred CCCCCCCCEEEEEEEecCCCcccceEEEEEEEEec
Q 021720 250 IPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRN 284 (308)
Q Consensus 250 IPeFkpGDTVrV~~kI~EnKeRiQ~FeGVVIARRN 284 (308)
-..|.+||+|+|. .-=..-|+|+|....+
T Consensus 5 ~~~f~~GD~V~V~------~Gpf~g~~G~V~evd~ 33 (59)
T 2e6z_A 5 SSGFQPGDNVEVC------EGELINLQGKILSVDG 33 (59)
T ss_dssp CSSCCTTSEEEEC------SSTTTTCEEEECCCBT
T ss_pred cccCCCCCEEEEe------ecCCCCCEEEEEEEeC
Confidence 3569999999985 3445678899998875
No 16
>1u1z_A (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; fatty acid biosynthesis, hot DOG fold, lyase; 2.50A {Pseudomonas aeruginosa} SCOP: d.38.1.6
Probab=40.65 E-value=21 Score=28.98 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=21.9
Q ss_pred CCCCCCEEEEEEEecCCCcccceEEEEEE
Q 021720 252 DIKPGYIVQLKVVIPENKRRVSTLKGIVI 280 (308)
Q Consensus 252 eFkpGDTVrV~~kI~EnKeRiQ~FeGVVI 280 (308)
...|||+|++.+++.+.+.++-.|++.+.
T Consensus 120 pV~pGD~L~~~v~v~~~~~g~~~~~~~~~ 148 (168)
T 1u1z_A 120 PVLPGDQLQLHAKFISVKRSIWKFDCHAT 148 (168)
T ss_dssp CCCTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCCCEEEEEEEEEEEeCCEEEEEEEEE
Confidence 35699999999999886556666776554
No 17
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=37.67 E-value=15 Score=32.98 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=27.4
Q ss_pred CCCCCCCCEEEEEEEecCCCcccceE----EEEEEEEec
Q 021720 250 IPDIKPGYIVQLKVVIPENKRRVSTL----KGIVIARRN 284 (308)
Q Consensus 250 IPeFkpGDTVrV~~kI~EnKeRiQ~F----eGVVIARRN 284 (308)
-|.|.+||.|+|.-..+..-.|+..| +|+|.+..+
T Consensus 136 ~~~F~vGd~Vrv~~~~~~~HtR~P~Y~Rgk~G~I~~~~g 174 (226)
T 1ugp_B 136 PPKFKEGDVVRFSTASPKGHARRARYVRGKTGTVVKHHG 174 (226)
T ss_dssp CCSCCTTCEEEECCCCCSSCCCCCGGGTTCEEEEEEEEE
T ss_pred CCcCCCCCeEEEccCCCCCcccccHHhCCCeEEEEEEec
Confidence 58899999999986555567787776 688887664
No 18
>4i83_A 3-hydroxyacyl-[acyl-carrier-protein] dehydratase; FABZ, hot DOG fold, thioesterase, lyase; 2.60A {Neisseria meningitidis}
Probab=37.53 E-value=26 Score=28.01 Aligned_cols=28 Identities=14% Similarity=0.373 Sum_probs=22.4
Q ss_pred CCCCCEEEEEEEecCCCcccceEEEEEE
Q 021720 253 IKPGYIVQLKVVIPENKRRVSTLKGIVI 280 (308)
Q Consensus 253 FkpGDTVrV~~kI~EnKeRiQ~FeGVVI 280 (308)
..|||++.+++++.+.+..+-.|+|.+.
T Consensus 107 V~PGd~L~i~~~v~~~~~~~~~~~~~~~ 134 (152)
T 4i83_A 107 VIPGDQLVFEVELLTSRRGIGKFNAVAK 134 (152)
T ss_dssp CCTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEEeeCCEEEEEEEEE
Confidence 4799999999998876666777887654
No 19
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=37.49 E-value=16 Score=32.76 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=27.4
Q ss_pred CCCCCCCCCEEEEEEEecCCCcccceE----EEEEEEEec
Q 021720 249 EIPDIKPGYIVQLKVVIPENKRRVSTL----KGIVIARRN 284 (308)
Q Consensus 249 dIPeFkpGDTVrV~~kI~EnKeRiQ~F----eGVVIARRN 284 (308)
.-|.|++||.|+|.-..+..-.|+..| +|+|.+..+
T Consensus 127 ~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~g 166 (219)
T 3qyh_B 127 ARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDHG 166 (219)
T ss_dssp SCCCCCTTCEEEECCCCCSSCCCSCGGGTTCEEEEEEEEE
T ss_pred CCCCCCCCCEEEECCCCCCCcccccHHHCCCeeEEEEEec
Confidence 358999999999976555567777776 688877764
No 20
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=37.10 E-value=58 Score=31.53 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=25.1
Q ss_pred CCC--CCCCCCEEEEEEEecCCCcccceEEEEEEEEecC
Q 021720 249 EIP--DIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNA 285 (308)
Q Consensus 249 dIP--eFkpGDTVrV~~kI~EnKeRiQ~FeGVVIARRNr 285 (308)
.+| .|++||.|.|.- ++....+.++|+|..+...
T Consensus 75 ~l~~~~~~~Gd~v~~~~---~~~~~~~~~~g~v~~~~~~ 110 (646)
T 4b3f_X 75 ALPSNSFTSGDIVGLYD---AANEGSQLATGILTRVTQK 110 (646)
T ss_dssp CCCCCCCCTTCEEEEEE---TTTTSCCCEEEEEEEEETT
T ss_pred CCccCCCCCCCEEEEEe---cCCCCCceEEEEEEEEeCC
Confidence 466 699999998862 2344557899999998754
No 21
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=36.48 E-value=17 Score=35.66 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=32.0
Q ss_pred CCCCCC-CCCCEEEEEEEecCCCcccceEEEEEEEEecCCCcceEEEEe
Q 021720 248 REIPDI-KPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRR 295 (308)
Q Consensus 248 rdIPeF-kpGDTVrV~~kI~EnKeRiQ~FeGVVIARRNrGLnSTFTLRK 295 (308)
..+|.+ .+||+|.++= =++|.|.|-+.+.-+.+.+++|.|=+
T Consensus 108 e~LP~V~~~GDII~Lhr------vkIq~~ng~~~~v~~~~~~SswavF~ 150 (495)
T 1jb7_A 108 EDLPIIHRAGDIIRVHR------ATLRLYNGQRQFNANVFYSSSWALFS 150 (495)
T ss_dssp GGSCCCCEETCEEEEEE------EEEEEETTEEEEEEETTTTCEEEEEC
T ss_pred HHCCCCCCCCCEEEEEE------EEEEEECCcEEEEecCCCceEEEEEe
Confidence 368999 7999999972 35777877777777777778887644
No 22
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=36.32 E-value=16 Score=32.88 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=27.3
Q ss_pred CCCCCCCCCEEEEEEEecCCCcccceE----EEEEEEEec
Q 021720 249 EIPDIKPGYIVQLKVVIPENKRRVSTL----KGIVIARRN 284 (308)
Q Consensus 249 dIPeFkpGDTVrV~~kI~EnKeRiQ~F----eGVVIARRN 284 (308)
.-|.|++||.|+|.-..+..-.|+..| +|+|.+..+
T Consensus 138 ~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~g 177 (229)
T 3hht_B 138 ASPRFKVGERIKTKNIHPTGHTRFPRYARDKYGVIDEVYG 177 (229)
T ss_dssp SCCSCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEEE
T ss_pred CCCCCCCCCEEEECCCCCCCcccCcHHHCCCeeEEEEEec
Confidence 348899999999976555566777766 688877764
No 23
>1z6b_A Pffabz, fatty acid synthesis protein; malaria, beta-hydroxyacyl-ACP dehydra fatty acid biosynthesis, SAD phasing, lyase; 2.09A {Plasmodium falciparum} SCOP: d.38.1.6 PDB: 3az8_A* 3az9_A* 3aza_A* 3azb_A* 1zhg_A 2oki_A 2okh_A
Probab=35.56 E-value=30 Score=27.22 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=20.5
Q ss_pred CCCCCCEEEEEEEecCCCccc--ceEEEEE
Q 021720 252 DIKPGYIVQLKVVIPENKRRV--STLKGIV 279 (308)
Q Consensus 252 eFkpGDTVrV~~kI~EnKeRi--Q~FeGVV 279 (308)
..+|||+|++++++.+.+.+. -.+++.+
T Consensus 106 pV~pGd~l~~~~~v~~~~~~~g~~~~~~~~ 135 (154)
T 1z6b_A 106 PVLPGDTLTMQANLISFKSSLGIAKLSGVG 135 (154)
T ss_dssp CCCTTCEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEeeCCceEEEEEEEE
Confidence 568899999999998843333 5666665
No 24
>2f41_A Transcription factor FAPR; 'HOT-DOG' fold, gene regulation; 2.50A {Bacillus subtilis} SCOP: d.38.1.5
Probab=32.79 E-value=51 Score=24.84 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=19.9
Q ss_pred CCCCCCEEEEEEEecC--CCcccceEEEEE
Q 021720 252 DIKPGYIVQLKVVIPE--NKRRVSTLKGIV 279 (308)
Q Consensus 252 eFkpGDTVrV~~kI~E--nKeRiQ~FeGVV 279 (308)
..+|||+|.+..++.+ .+.+...+++.+
T Consensus 72 Pv~~Gd~l~~~a~v~~~~~~~~~~~v~~~~ 101 (121)
T 2f41_A 72 QVKQGERVVAKAKVTAVEKEKGRTVVEVNS 101 (121)
T ss_dssp CCBTTCEEEEEEEEEEECSSSSCEEEEEEE
T ss_pred CcCCCCEEEEEEEEEEEEccCCEEEEEEEE
Confidence 4679999999999984 445555555543
No 25
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=32.53 E-value=1.1e+02 Score=20.88 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=21.8
Q ss_pred CCCCCCEEEEEEEecCCCcccceEEEEEEEEec
Q 021720 252 DIKPGYIVQLKVVIPENKRRVSTLKGIVIARRN 284 (308)
Q Consensus 252 eFkpGDTVrV~~kI~EnKeRiQ~FeGVVIARRN 284 (308)
+|++||.|+|. .--..-|+|+|.....
T Consensus 4 ~~~~Gd~V~V~------~Gpf~g~~g~v~~v~~ 30 (58)
T 1nz9_A 4 AFREGDQVRVV------SGPFADFTGTVTEINP 30 (58)
T ss_dssp SCCTTCEEEEC------SGGGTTCEEEEEEEET
T ss_pred ccCCCCEEEEe------ecCCCCcEEEEEEEcC
Confidence 58999999985 4567788999998864
No 26
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=29.51 E-value=1e+02 Score=24.94 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=31.1
Q ss_pred CCCCCCCCEEEEEEEecCCCcccceEEEEEEEEecCC--CcceEEEEeccCCeeeEEEee
Q 021720 250 IPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAG--ISTTFRLRRLVAGVGVESLFP 307 (308)
Q Consensus 250 IPeFkpGDTVrV~~kI~EnKeRiQ~FeGVVIARRNrG--LnSTFTLRKIs~GVGVERiFP 307 (308)
..+|+.|.+|.+. .+.=...-+=-.+-|+| ---...+|++..|.-+|++||
T Consensus 11 ~~~lrkG~~i~~~-------g~p~~Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~ 63 (136)
T 1bkb_A 11 AGELKEGSYVVID-------GEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLP 63 (136)
T ss_dssp GGGCCTTCEEEET-------TEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEE
T ss_pred HHHccCCCEEEEC-------CEEEEEEEEEEecCCCCCceEEEEEEEECCCCCeEEEEEc
Confidence 3589999998763 11111111111223442 223567999999999999997
No 27
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=29.02 E-value=50 Score=24.95 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=18.2
Q ss_pred CCCCCCEEEEEEEecCCCcccceEEE
Q 021720 252 DIKPGYIVQLKVVIPENKRRVSTLKG 277 (308)
Q Consensus 252 eFkpGDTVrV~~kI~EnKeRiQ~FeG 277 (308)
+|++||+|+|.=++.+...+++..-|
T Consensus 63 ~i~~Gdvv~i~g~v~~~~~~~el~~g 88 (97)
T 3e0e_A 63 EVKKGDIAEVSGYVKQGYSGLEISVD 88 (97)
T ss_dssp CCCTTCEEEEEEEEEEC--CEEEEEE
T ss_pred ccCCCCEEEEEEEEEEcCCeEEEEEC
Confidence 79999999998777775555555433
No 28
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=28.66 E-value=32 Score=30.16 Aligned_cols=33 Identities=12% Similarity=0.168 Sum_probs=24.2
Q ss_pred CCCCCC-CCCCEEEEEEEecCCCcccceEEEEEEEEecCC
Q 021720 248 REIPDI-KPGYIVQLKVVIPENKRRVSTLKGIVIARRNAG 286 (308)
Q Consensus 248 rdIPeF-kpGDTVrV~~kI~EnKeRiQ~FeGVVIARRNrG 286 (308)
..+|.+ .+||+|.++= =++|.|.|-+.+.-+.+
T Consensus 95 e~LP~V~~~GDIIlL~r------vkiq~~~g~~~~v~~~~ 128 (187)
T 1qzg_A 95 NDLPVIKQVGQPLLLHQ------ITLRSYRDRTQGLSKDQ 128 (187)
T ss_dssp SCSCCCCSTTCEEEEEE------EEEEEETTEEEEEEEEE
T ss_pred hhCCCCCCCCCEEEEEE------EEEEEECCeEEEEEcCc
Confidence 479998 9999999983 35666766666655554
No 29
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=28.11 E-value=1.2e+02 Score=23.94 Aligned_cols=37 Identities=27% Similarity=0.289 Sum_probs=30.3
Q ss_pred CCCCEEEEEEEecCCCcccceEEEEEEEEecCCCcceEEEEecc
Q 021720 254 KPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLV 297 (308)
Q Consensus 254 kpGDTVrV~~kI~EnKeRiQ~FeGVVIARRNrGLnSTFTLRKIs 297 (308)
..|.+|.++ -+.-+-+|||++...-. .+.++||+|++
T Consensus 7 ~iGs~VSi~-----c~d~lGvYQG~i~~vd~--~~~tItL~~~f 43 (84)
T 2vc8_A 7 WLGSIVSIN-----CGDSLGVYQGRVSAVDQ--VSQTISLTRPF 43 (84)
T ss_dssp TTTCEEEEE-----CCTTTCEEEEEEEEEET--TTTEEEEEEEE
T ss_pred ccCCEEEEE-----ECCCceEEEEEEEEecc--CCCeEEEehhh
Confidence 468888887 66778899999999874 45789999986
No 30
>1iq6_A (R)-hydratase, (R)-specific enoyl-COA hydratase; polyhydroxyalkanoate, aeromonas caviae, the hydratase 2 motif, lyase; 1.50A {Aeromonas punctata} SCOP: d.38.1.4
Probab=27.74 E-value=54 Score=24.21 Aligned_cols=16 Identities=19% Similarity=0.137 Sum_probs=13.9
Q ss_pred CCCCCCEEEEEEEecC
Q 021720 252 DIKPGYIVQLKVVIPE 267 (308)
Q Consensus 252 eFkpGDTVrV~~kI~E 267 (308)
..++||+|++..++.+
T Consensus 87 Pv~~Gd~l~~~~~v~~ 102 (134)
T 1iq6_A 87 PVFVGDEVTAEVEVTA 102 (134)
T ss_dssp CCBTTCEEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEEE
Confidence 4679999999999877
No 31
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=26.72 E-value=53 Score=31.87 Aligned_cols=49 Identities=14% Similarity=0.219 Sum_probs=31.1
Q ss_pred CCCCCCEEEEEEEecCCCcccceEEEEEEEEecCCCcceEEEEecc--CCeeeEE
Q 021720 252 DIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLV--AGVGVES 304 (308)
Q Consensus 252 eFkpGDTVrV~~kI~EnKeRiQ~FeGVVIARRNrGLnSTFTLRKIs--~GVGVER 304 (308)
.+.+||.|+|...- +++ ...|+||+|-+..-+ +....|-|.. +++||.+
T Consensus 11 ~~~~gd~v~~~~~~--~~~-~~~~~g~~~~~~~~~-~~~~~~~kl~~gyn~g~~~ 61 (438)
T 1zq1_A 11 NINVGDFVRITKEE--DGE-EVTYEGYIMPPYELS-AGDTLVLKLENGYNIGIAL 61 (438)
T ss_dssp TCCTTCEEEEEEES--SSS-EEECCEEECCCCTTC-CCSEEEEEETTSCEEEEEG
T ss_pred CCCCCCEEEEEECC--Ccc-eeEEEEEEecCcccC-CCCeEEEEccCCceeeech
Confidence 47789999987531 122 268999999766544 3444455665 4566653
No 32
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=25.70 E-value=1e+02 Score=25.21 Aligned_cols=38 Identities=16% Similarity=0.293 Sum_probs=29.9
Q ss_pred CCCCEEEEEEEecCCCcccceEEEEEEEEecCCCcceEEEEecc-CCe
Q 021720 254 KPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLV-AGV 300 (308)
Q Consensus 254 kpGDTVrV~~kI~EnKeRiQ~FeGVVIARRNrGLnSTFTLRKIs-~GV 300 (308)
..|..|.|+- .+-+-+|+|.|++.. .+++||+|.+ +|+
T Consensus 10 wiG~~VSI~C-----~d~LGVyQG~I~~V~----~~~ItL~kaFrNGi 48 (103)
T 2rm4_A 10 WIGCAVSIAC-----DEVLGVFQGLIKQIS----AEEITIVRAFRNGV 48 (103)
T ss_dssp GTTCEEEEEE-----CTTTCEEEEEEEEEE----TTEEEEEEEEETTE
T ss_pred eeceEEEEee-----CCcceEeeEEEEEcc----cceeEEhhhhhcCc
Confidence 3688888874 466789999999998 4679999976 555
No 33
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.38 E-value=1.1e+02 Score=25.94 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=29.7
Q ss_pred CCCCCCCCCCEEEEEEEecCCCcccceEEEEEEEEec
Q 021720 248 REIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRN 284 (308)
Q Consensus 248 rdIPeFkpGDTVrV~~kI~EnKeRiQ~FeGVVIARRN 284 (308)
+..|.-.+||+|.|.++-.....|=+++.+||+..+.
T Consensus 51 ~r~~~A~iGD~IvvsVKk~~p~~kg~V~kAVIVRtkk 87 (141)
T 3j21_J 51 RRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRK 87 (141)
T ss_dssp TCCCCBCSSCEEEEEEEEECTTTTTCEEEEEEEECSS
T ss_pred cccccCCcCCEEEEEEEecCCCCcCceEEEEEEEeCC
Confidence 4578899999999999865534478999999998663
No 34
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=24.69 E-value=1.3e+02 Score=24.47 Aligned_cols=49 Identities=12% Similarity=0.198 Sum_probs=28.7
Q ss_pred CCCCCCEEEEEEEecCCCcccceEEEEEEEEecCC--CcceEEEEeccCCeeeEEEee
Q 021720 252 DIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAG--ISTTFRLRRLVAGVGVESLFP 307 (308)
Q Consensus 252 eFkpGDTVrV~~kI~EnKeRiQ~FeGVVIARRNrG--LnSTFTLRKIs~GVGVERiFP 307 (308)
+||.|.+|.+. ..--++--|+ -.+-|+| ---...+|++..|.-+|++||
T Consensus 11 ~lrkG~~i~~~----g~p~~Vve~~---~~KpGKgG~A~vr~k~knl~TG~~~e~tf~ 61 (138)
T 3cpf_A 11 ALRKNGFVVLK----GRPCKIVEMS---TSKTGKHGHAKVHLVGIDIFTGKKYEDICP 61 (138)
T ss_dssp GCCTTSEEEET----TEEEEEEEEE---EECC----CCEEEEEEEETTTCCEEEEEEE
T ss_pred HCcCCCEEEEC----CEEEEEEEEE---eccCCCCccEEEEEEEEECCCCCEEEEEeC
Confidence 68999888763 1111222221 1222332 224567999999999999997
No 35
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=24.64 E-value=1.3e+02 Score=24.56 Aligned_cols=51 Identities=14% Similarity=0.289 Sum_probs=30.0
Q ss_pred CCCCCCCCEEEEEEEecCCCcccceEEEEEEEEecC-CC-cceEEEEeccCCeeeEEEee
Q 021720 250 IPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNA-GI-STTFRLRRLVAGVGVESLFP 307 (308)
Q Consensus 250 IPeFkpGDTVrV~~kI~EnKeRiQ~FeGVVIARRNr-GL-nSTFTLRKIs~GVGVERiFP 307 (308)
..+|+.|.+|.+.= .--++.-|+ -.+-|+ |- --...+|++..|.-+|++||
T Consensus 9 a~~lkkG~~i~~~g----~p~~Vve~~---~~KpGKhG~A~vr~k~knl~tG~~~e~tf~ 61 (138)
T 1iz6_A 9 VSKLKPGRYIIIDD----EPCRIVNIT---VSSPGKHGSAKARIEAVGIFDGKVRSIVKP 61 (138)
T ss_dssp GGGCCTTSEEEETT----EEEEEEEEE---ECCCCTTSCCEEEEEEEETTTCCEEEEEEE
T ss_pred HHHccCCCEEEECC----EEEEEEEEE---eecCCCCCceEEEEEEEECCCCCEEEEEec
Confidence 35899999987630 001111111 112233 31 14566899999999999997
No 36
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=23.97 E-value=32 Score=30.63 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=26.2
Q ss_pred CCCCCCCCEEEEEEEecCCCcccceE----EEEE-EEEec
Q 021720 250 IPDIKPGYIVQLKVVIPENKRRVSTL----KGIV-IARRN 284 (308)
Q Consensus 250 IPeFkpGDTVrV~~kI~EnKeRiQ~F----eGVV-IARRN 284 (308)
-|.|++||.|+|.-..+..-.|+..| +|+| .+..+
T Consensus 120 ~~~F~vGd~Vrv~~~~~~gHtR~P~YvRGk~G~I~~~~~g 159 (212)
T 3a8g_B 120 TTTFEVGQRVRVRDEYVPGHIRMPAYCRGRVGTISHRTTE 159 (212)
T ss_dssp CCCCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEECSS
T ss_pred CcccCCCCeEEEecCCCCCcccccHHHCCCeEEEEEEecc
Confidence 58899999999986555566777666 6888 55554
No 37
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=23.85 E-value=94 Score=26.03 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=29.0
Q ss_pred CCCCCCCCCCEEEEEEEecCCCcccceEEEEEEEEe
Q 021720 248 REIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARR 283 (308)
Q Consensus 248 rdIPeFkpGDTVrV~~kI~EnKeRiQ~FeGVVIARR 283 (308)
+.+|.-.+||+|.|.++-.....|-+++.+||+..+
T Consensus 42 ~r~p~a~iGD~IvvsVKk~~p~~kg~v~~AVIVRtk 77 (132)
T 1vq8_K 42 NRLPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQR 77 (132)
T ss_dssp TCCCEECTTCEEEEEEEEECTTTTTCEEEEEEEECS
T ss_pred cccCCCccCcEEEEEEEecCCCCCCcEEEEEEEEcC
Confidence 457888999999999876553348899999999865
No 38
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=23.52 E-value=55 Score=23.51 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=15.9
Q ss_pred CCCCCCEEEEEEEecC-CCcccc
Q 021720 252 DIKPGYIVQLKVVIPE-NKRRVS 273 (308)
Q Consensus 252 eFkpGDTVrV~~kI~E-nKeRiQ 273 (308)
.|++||.|+|.+.-.. ++.|+.
T Consensus 45 ~~~~Gd~V~v~V~~vd~~~~~i~ 67 (80)
T 2k52_A 45 NLNVGDEIIVQAIDVRPEKREID 67 (80)
T ss_dssp GCCTTCEEEEEEEEEETTTTEEE
T ss_pred eeCCCCEEEEEEEEEECCCCEEE
Confidence 4999999999876543 455543
No 39
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=23.41 E-value=1.5e+02 Score=25.34 Aligned_cols=49 Identities=16% Similarity=0.327 Sum_probs=31.2
Q ss_pred CCCCCCEEEEEEEecCCCcccceEEEEEEEEecC-C-CcceEEEEeccCCeeeEEEee
Q 021720 252 DIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNA-G-ISTTFRLRRLVAGVGVESLFP 307 (308)
Q Consensus 252 eFkpGDTVrV~~kI~EnKeRiQ~FeGVVIARRNr-G-LnSTFTLRKIs~GVGVERiFP 307 (308)
+||.|.+|.+. .+.=...-+--.+-|+ | ---.+.+|+|..|.-+|++||
T Consensus 33 dlrkG~~I~id-------G~P~~Vve~~~~KpGKhG~A~vr~k~knl~TGk~~E~tf~ 83 (167)
T 3hks_A 33 NIRKGGHIVIK-------NRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVP 83 (167)
T ss_dssp GCCTTSEEEET-------TEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEE
T ss_pred HccCCCEEEEC-------CEEEEEEEEEEeCCCCCCceEEEEEEEEcCCCCEEEEEEc
Confidence 79999998773 1221111122234455 3 123566999999999999997
No 40
>2f3x_A Transcription factor FAPR; 'HOT-DOG' fold / malonyl-COA complex, gene regulation; HET: MLC; 3.10A {Bacillus subtilis} SCOP: d.38.1.5
Probab=22.99 E-value=80 Score=25.61 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=19.8
Q ss_pred CCCCCCEEEEEEEecC--CCcccceEEEEE
Q 021720 252 DIKPGYIVQLKVVIPE--NKRRVSTLKGIV 279 (308)
Q Consensus 252 eFkpGDTVrV~~kI~E--nKeRiQ~FeGVV 279 (308)
..+|||+|.+..++.+ .+.++..+++.+
T Consensus 108 PV~~GD~L~a~a~v~~~~~~~~~~~v~~~~ 137 (157)
T 2f3x_A 108 QVKQGERVVAKAKVTAVEKEKGRTVVEVNS 137 (157)
T ss_dssp CCBTTCEEEEEEEEEEEETGGGEEEEEEEE
T ss_pred CCCCCCEEEEEEEEEEEEccCCEEEEEEEE
Confidence 4579999999999985 445555555544
No 41
>3esi_A Uncharacterized protein; protein from erwinia carotovora subsp. atroseptica (pectobacterium atrosepticum), structural genomics; 2.50A {Pectobacterium atrosepticum}
Probab=22.89 E-value=57 Score=26.60 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=17.1
Q ss_pred CCCCCCCEEEEEEEecCCCcc
Q 021720 251 PDIKPGYIVQLKVVIPENKRR 271 (308)
Q Consensus 251 PeFkpGDTVrV~~kI~EnKeR 271 (308)
-.+.|||+|++.+++.+.+.+
T Consensus 76 ~~V~PGD~l~l~v~~~~~~~~ 96 (129)
T 3esi_A 76 QPILPGKTLRLVLIWHAGKQS 96 (129)
T ss_dssp SCCCTTCEEEEEEEEETTTTE
T ss_pred cccCCCCEEEEEEEEEecCCc
Confidence 457899999999999885543
No 42
>3bnv_A CJ0977; virulence factor, hot-DOG fold, flagel unknown function; HET: MSE; 2.60A {Campylobacter jejuni}
Probab=22.89 E-value=92 Score=24.91 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=21.5
Q ss_pred CCCCCCEEEEEEEecCCC-cccceEEEEE
Q 021720 252 DIKPGYIVQLKVVIPENK-RRVSTLKGIV 279 (308)
Q Consensus 252 eFkpGDTVrV~~kI~EnK-eRiQ~FeGVV 279 (308)
..++||+|.+..++.+.+ .|...+++.+
T Consensus 99 PV~~GD~L~a~a~v~~~~~~~~~~v~~~~ 127 (152)
T 3bnv_A 99 PLKLGDVLELEAHALFDETSKKRDVKVVG 127 (152)
T ss_dssp CCBTTCEEEEEEEECCCSSCSEEEEEEEE
T ss_pred CCCCCCEEEEEEEEEEEcCCcEEEEEEEE
Confidence 467999999999998865 6666666544
No 43
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=22.71 E-value=53 Score=24.30 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=25.8
Q ss_pred cccceEEEEEEEEecC-CCcceEEEEec-cCCeeeEEEe
Q 021720 270 RRVSTLKGIVIARRNA-GISTTFRLRRL-VAGVGVESLF 306 (308)
Q Consensus 270 eRiQ~FeGVVIARRNr-GLnSTFTLRKI-s~GVGVERiF 306 (308)
.|.+.|-|+|...... | ..++.+||- .-|-+||-+=
T Consensus 3 ~~~~~fvG~V~~~~~~~g-~~~ie~rN~f~~GD~iEi~~ 40 (89)
T 4he6_A 3 KTTREFAGLVLGYDPETG-IATVQQRNHFRPGDEVEFFG 40 (89)
T ss_dssp CSGGGCSEEEEEEETTTT-EEEEEESSCBCTTCEEEEES
T ss_pred ccccEEEEEEEEEeCCCC-EEEEEEcCCcCCCCEEEEEc
Confidence 4778899999886544 4 456778874 5688888653
No 44
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=22.44 E-value=64 Score=24.87 Aligned_cols=33 Identities=24% Similarity=0.231 Sum_probs=20.9
Q ss_pred CCCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCCcce
Q 021720 252 DIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTT 290 (308)
Q Consensus 252 eFkpGDTVrV~~kI~E-nKeRiQ~FeGVVIARRNrGLnST 290 (308)
.|++||.|+|.+.-.. +++|++ ...+...+++.
T Consensus 67 ~~~~Gd~V~vkV~~vd~~~~~i~------Lslk~~~l~~~ 100 (119)
T 1wi5_A 67 KLKVGQYLNCIVEKVKGNGGVVS------LSVGHSEVSTA 100 (119)
T ss_dssp CCCTTCEEEEEEEECCTTSCEEE------EECCCCCSCCC
T ss_pred EeCCCCEEEEEEEEEeCCCCEEE------EEEchhhcccc
Confidence 5999999999876554 444433 34555555443
No 45
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=21.94 E-value=1e+02 Score=25.39 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=25.5
Q ss_pred CCCCCCEEEEEEEecC---CCcccceEEEEEEEEec
Q 021720 252 DIKPGYIVQLKVVIPE---NKRRVSTLKGIVIARRN 284 (308)
Q Consensus 252 eFkpGDTVrV~~kI~E---nKeRiQ~FeGVVIARRN 284 (308)
.-.+||+|.|.++-.. ..++=+++.+||+..+.
T Consensus 32 ~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk 67 (122)
T 3r8s_K 32 YAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKK 67 (122)
T ss_dssp CBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSS
T ss_pred cccCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCC
Confidence 4679999999998543 33556999999998654
No 46
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=20.79 E-value=2.5e+02 Score=20.47 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=15.8
Q ss_pred CCCCCCCCCEEEEEEEecC
Q 021720 249 EIPDIKPGYIVQLKVVIPE 267 (308)
Q Consensus 249 dIPeFkpGDTVrV~~kI~E 267 (308)
|-|-.+|||+|.++..+..
T Consensus 9 Dr~iYrPGetV~~~~~~~~ 27 (102)
T 2p9r_A 9 DKSIYKPGQTVKFRVVSMD 27 (102)
T ss_dssp SCSEECTTCEEEEEEEEEC
T ss_pred CCcccCCCCEEEEEEEEEC
Confidence 5577899999999988765
No 47
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=20.51 E-value=1.7e+02 Score=23.41 Aligned_cols=42 Identities=14% Similarity=0.189 Sum_probs=30.0
Q ss_pred CCCCCCCCEEEEEEEecCCCcccceEEEEEEEEecCCCcceEEEEeccCC
Q 021720 250 IPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAG 299 (308)
Q Consensus 250 IPeFkpGDTVrV~~kI~EnKeRiQ~FeGVVIARRNrGLnSTFTLRKIs~G 299 (308)
...|.+||.|+|. .--..-|+|+|....... ...+|.=...|
T Consensus 89 ~~~~~~Gd~VrI~------~Gpf~g~~g~V~~vd~~k--~~v~V~v~~~g 130 (152)
T 3p8b_B 89 VSGLEPGDLVEVI------AGPFKGQKAKVVKIDESK--DEVVVQFIDAI 130 (152)
T ss_dssp TTTCCTTCEEEEC------SSTTTTCEEEEEEEETTT--TEEEEEESSCS
T ss_pred cccCCCCCEEEEe------eecCCCCEEEEEEEeCCC--CEEEEEEEecc
Confidence 4679999999985 356788999999987654 34455444444
Done!