Query 021721
Match_columns 308
No_of_seqs 266 out of 2143
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 05:09:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02983 biotin carboxyl carri 100.0 5E-51 1.1E-55 380.1 24.3 266 1-308 1-274 (274)
2 TIGR00531 BCCP acetyl-CoA carb 100.0 1.1E-30 2.4E-35 227.6 19.2 156 136-307 1-156 (156)
3 PRK06302 acetyl-CoA carboxylas 100.0 5.1E-30 1.1E-34 223.1 19.0 155 136-307 1-155 (155)
4 COG0511 AccB Biotin carboxyl c 99.9 1E-26 2.2E-31 199.3 13.1 140 141-308 1-140 (140)
5 PRK05889 putative acetyl-CoA c 99.7 7.5E-17 1.6E-21 122.6 8.4 68 233-307 4-71 (71)
6 PF00364 Biotin_lipoyl: Biotin 99.7 2.2E-17 4.8E-22 126.7 4.3 73 233-306 2-74 (74)
7 PRK07051 hypothetical protein; 99.7 3E-16 6.4E-21 122.3 9.8 76 232-307 4-79 (80)
8 PRK08225 acetyl-CoA carboxylas 99.7 3.6E-16 7.8E-21 118.1 8.0 69 232-307 2-70 (70)
9 PRK06748 hypothetical protein; 99.6 5.9E-16 1.3E-20 123.0 8.4 69 232-307 5-74 (83)
10 PRK06549 acetyl-CoA carboxylas 99.6 8.8E-15 1.9E-19 124.9 15.0 71 230-307 60-130 (130)
11 PRK05641 putative acetyl-CoA c 99.6 1.6E-14 3.4E-19 126.3 13.9 70 230-306 83-152 (153)
12 cd06850 biotinyl_domain The bi 99.5 3.2E-14 6.9E-19 103.5 8.2 67 233-306 1-67 (67)
13 PRK14042 pyruvate carboxylase 99.4 2.3E-13 4.9E-18 140.5 9.4 71 230-307 524-594 (596)
14 PRK14875 acetoin dehydrogenase 99.4 1.1E-12 2.5E-17 122.2 8.3 64 238-308 15-78 (371)
15 PRK09282 pyruvate carboxylase 99.4 1.2E-12 2.7E-17 134.9 8.8 73 229-308 520-592 (592)
16 cd06663 Biotinyl_lipoyl_domain 99.4 2.9E-12 6.2E-17 96.5 8.4 61 239-306 13-73 (73)
17 TIGR01108 oadA oxaloacetate de 99.3 1.8E-12 4E-17 133.5 8.8 67 230-303 516-582 (582)
18 PRK14040 oxaloacetate decarbox 99.3 2.7E-12 5.9E-17 132.5 8.7 70 231-307 524-593 (593)
19 TIGR02712 urea_carbox urea car 99.3 3.6E-12 7.9E-17 140.3 9.5 72 229-307 1130-1201(1201)
20 PLN02226 2-oxoglutarate dehydr 99.3 3E-12 6.5E-17 128.8 8.0 63 238-307 104-166 (463)
21 TIGR01235 pyruv_carbox pyruvat 99.3 3.9E-12 8.4E-17 139.4 8.8 73 228-307 1071-1143(1143)
22 PRK12999 pyruvate carboxylase; 99.3 7.5E-12 1.6E-16 137.3 8.7 72 230-308 1075-1146(1146)
23 COG4770 Acetyl/propionyl-CoA c 99.3 7E-12 1.5E-16 127.9 7.8 72 230-308 574-645 (645)
24 PTZ00144 dihydrolipoamide succ 99.3 9.5E-12 2E-16 123.9 8.3 62 239-307 58-119 (418)
25 COG0508 AceF Pyruvate/2-oxoglu 99.2 1.6E-11 3.4E-16 121.6 7.5 62 239-307 16-77 (404)
26 COG1038 PycA Pyruvate carboxyl 99.2 1.3E-11 2.7E-16 129.8 6.3 77 224-307 1072-1148(1149)
27 PRK05704 dihydrolipoamide succ 99.2 4.2E-11 9.1E-16 118.7 8.1 62 239-307 16-77 (407)
28 TIGR01347 sucB 2-oxoglutarate 99.1 1.4E-10 3E-15 115.0 8.2 62 239-307 14-75 (403)
29 TIGR02927 SucB_Actino 2-oxoglu 99.1 2.3E-10 5E-15 118.2 7.7 63 238-307 148-210 (590)
30 PRK11854 aceF pyruvate dehydro 99.1 2.2E-10 4.7E-15 119.0 7.4 63 238-307 217-279 (633)
31 PRK11854 aceF pyruvate dehydro 99.0 5E-10 1.1E-14 116.4 8.1 63 238-307 13-75 (633)
32 TIGR01348 PDHac_trf_long pyruv 99.0 6.5E-10 1.4E-14 113.9 7.4 74 232-307 117-190 (546)
33 KOG0559 Dihydrolipoamide succi 99.0 2.2E-10 4.8E-15 112.0 3.0 57 252-308 92-148 (457)
34 KOG0369 Pyruvate carboxylase [ 99.0 1E-09 2.2E-14 114.1 7.2 76 226-308 1101-1176(1176)
35 PRK11855 dihydrolipoamide acet 99.0 1.2E-09 2.6E-14 111.7 7.6 74 232-307 120-193 (547)
36 PLN02528 2-oxoisovalerate dehy 98.9 1.8E-09 3.9E-14 107.4 8.2 61 240-307 13-73 (416)
37 cd06849 lipoyl_domain Lipoyl d 98.9 6.2E-09 1.3E-13 74.2 8.0 64 236-306 11-74 (74)
38 TIGR01348 PDHac_trf_long pyruv 98.9 5E-09 1.1E-13 107.4 8.3 66 235-307 9-74 (546)
39 PRK11856 branched-chain alpha- 98.8 8.7E-09 1.9E-13 101.6 8.2 63 238-307 15-77 (411)
40 PRK11855 dihydrolipoamide acet 98.8 7.9E-09 1.7E-13 105.7 8.1 62 239-307 15-76 (547)
41 PLN02744 dihydrolipoyllysine-r 98.8 7.5E-09 1.6E-13 106.2 7.4 61 239-306 126-187 (539)
42 TIGR01349 PDHac_trf_mito pyruv 98.8 9.1E-09 2E-13 103.0 7.6 63 238-307 12-75 (435)
43 KOG0557 Dihydrolipoamide acety 98.8 9.5E-09 2.1E-13 103.0 5.9 67 234-307 46-114 (470)
44 PRK11892 pyruvate dehydrogenas 98.7 2.3E-08 4.9E-13 101.0 7.5 62 239-307 16-78 (464)
45 KOG0238 3-Methylcrotonyl-CoA c 98.7 1E-08 2.2E-13 104.2 4.6 69 232-307 602-670 (670)
46 TIGR02927 SucB_Actino 2-oxoglu 98.7 3.1E-08 6.8E-13 102.5 7.2 63 238-307 15-77 (590)
47 PRK01202 glycine cleavage syst 98.5 4.2E-07 9.2E-12 77.2 6.7 56 253-308 44-106 (127)
48 PRK09783 copper/silver efflux 98.4 9E-07 2E-11 87.5 8.0 70 231-307 123-241 (409)
49 TIGR00998 8a0101 efflux pump m 98.4 5.6E-07 1.2E-11 84.8 6.2 33 276-308 205-237 (334)
50 cd06848 GCS_H Glycine cleavage 98.4 6.8E-07 1.5E-11 71.8 5.5 56 235-296 24-79 (96)
51 PRK10476 multidrug resistance 98.3 1.3E-06 2.8E-11 83.6 6.1 33 275-307 208-240 (346)
52 KOG0368 Acetyl-CoA carboxylase 98.3 1.1E-06 2.5E-11 97.4 6.2 71 229-307 683-753 (2196)
53 TIGR01730 RND_mfp RND family e 98.2 1.7E-06 3.7E-11 80.0 5.0 69 232-307 27-166 (322)
54 PRK10559 p-hydroxybenzoic acid 98.1 4.1E-06 8.8E-11 80.0 6.4 70 231-307 47-186 (310)
55 TIGR03077 not_gcvH glycine cle 98.1 5.3E-06 1.1E-10 69.3 5.1 55 253-307 37-98 (110)
56 PRK15136 multidrug efflux syst 98.1 4E-06 8.8E-11 82.3 5.1 32 276-307 216-247 (390)
57 PRK09578 periplasmic multidrug 98.1 5.5E-06 1.2E-10 80.6 6.0 70 231-307 63-205 (385)
58 PRK03598 putative efflux pump 98.1 6.3E-06 1.4E-10 78.4 6.1 32 276-307 204-235 (331)
59 PRK00624 glycine cleavage syst 98.0 1.3E-05 2.8E-10 67.4 6.6 55 253-307 39-100 (114)
60 KOG0558 Dihydrolipoamide trans 98.0 2.3E-06 5.1E-11 84.0 2.2 57 251-307 83-139 (474)
61 PRK13380 glycine cleavage syst 98.0 5E-06 1.1E-10 72.3 3.7 57 232-295 36-93 (144)
62 PRK15030 multidrug efflux syst 98.0 1.2E-05 2.5E-10 79.0 5.9 69 231-306 65-206 (397)
63 TIGR00527 gcvH glycine cleavag 97.9 1.1E-05 2.3E-10 68.7 4.7 41 255-295 45-85 (127)
64 TIGR03309 matur_yqeB selenium- 97.9 3.2E-05 6.8E-10 73.2 8.3 65 231-308 164-228 (256)
65 PRK09859 multidrug efflux syst 97.9 1.1E-05 2.5E-10 78.5 5.5 68 232-306 62-202 (385)
66 PRK11578 macrolide transporter 97.8 2.7E-05 5.9E-10 75.3 5.6 69 231-306 61-217 (370)
67 PRK11556 multidrug efflux syst 97.8 3.2E-05 6.9E-10 76.7 5.3 70 230-306 86-228 (415)
68 PF13533 Biotin_lipoyl_2: Biot 97.7 8.2E-05 1.8E-09 53.4 4.9 32 276-307 3-34 (50)
69 PF12700 HlyD_2: HlyD family s 97.7 2.4E-05 5.3E-10 72.6 2.4 33 231-271 21-53 (328)
70 TIGR02971 heterocyst_DevB ABC 97.6 0.00011 2.3E-09 69.6 6.5 35 231-272 13-50 (327)
71 PF13533 Biotin_lipoyl_2: Biot 97.6 5.7E-05 1.2E-09 54.2 2.7 37 232-275 3-39 (50)
72 cd06253 M14_ASTE_ASPA_like_3 A 97.5 0.00034 7.3E-09 66.9 8.1 66 231-306 229-297 (298)
73 cd06252 M14_ASTE_ASPA_like_2 A 97.4 0.00047 1E-08 66.2 7.8 66 232-307 245-314 (316)
74 PRK12784 hypothetical protein; 97.4 0.00051 1.1E-08 54.7 6.4 68 233-307 7-75 (84)
75 TIGR01843 type_I_hlyD type I s 97.4 0.00038 8.3E-09 67.0 6.8 34 231-271 43-76 (423)
76 cd06251 M14_ASTE_ASPA_like_1 A 97.3 0.00082 1.8E-08 63.7 8.2 65 232-306 220-286 (287)
77 TIGR02994 ectoine_eutE ectoine 97.2 0.001 2.3E-08 64.6 8.0 65 232-306 256-324 (325)
78 cd06250 M14_PaAOTO_like An unc 97.2 0.00099 2.1E-08 65.5 7.6 66 231-306 289-358 (359)
79 PF01597 GCV_H: Glycine cleava 97.2 0.00082 1.8E-08 56.7 5.8 39 253-291 38-76 (122)
80 PRK05889 putative acetyl-CoA c 97.1 0.00069 1.5E-08 51.4 4.2 33 275-307 2-34 (71)
81 COG0509 GcvH Glycine cleavage 97.0 0.00091 2E-08 57.8 4.4 55 253-307 46-107 (131)
82 cd06254 M14_ASTE_ASPA_like_4 A 97.0 0.0019 4.1E-08 61.2 6.8 65 230-304 222-288 (288)
83 PF13375 RnfC_N: RnfC Barrel s 96.9 0.00097 2.1E-08 54.9 3.6 38 252-290 44-81 (101)
84 PRK08225 acetyl-CoA carboxylas 96.7 0.0024 5.2E-08 48.0 4.3 33 275-307 1-33 (70)
85 PRK06748 hypothetical protein; 96.6 0.0034 7.4E-08 50.2 5.0 33 275-307 4-36 (83)
86 cd06850 biotinyl_domain The bi 96.5 0.0035 7.7E-08 45.1 3.7 31 277-307 1-31 (67)
87 COG3608 Predicted deacylase [G 96.5 0.0071 1.5E-07 59.4 6.8 65 232-306 257-324 (331)
88 cd06255 M14_ASTE_ASPA_like_5 A 96.0 0.019 4E-07 54.8 6.8 51 231-289 231-283 (293)
89 COG0511 AccB Biotin carboxyl c 95.8 0.01 2.3E-07 51.1 4.1 34 274-307 69-102 (140)
90 COG1566 EmrA Multidrug resista 95.8 0.0047 1E-07 61.0 2.2 33 276-308 209-241 (352)
91 PRK10476 multidrug resistance 95.8 0.017 3.6E-07 55.6 5.5 50 255-308 32-81 (346)
92 PRK06549 acetyl-CoA carboxylas 95.6 0.018 3.9E-07 49.6 4.5 33 275-307 61-93 (130)
93 PF04952 AstE_AspA: Succinylgl 95.5 0.037 8E-07 51.6 6.8 67 231-307 220-290 (292)
94 PF00364 Biotin_lipoyl: Biotin 95.5 0.016 3.5E-07 44.3 3.6 32 276-307 1-38 (74)
95 PRK07051 hypothetical protein; 95.4 0.015 3.3E-07 45.2 3.2 32 232-270 48-79 (80)
96 TIGR00998 8a0101 efflux pump m 95.4 0.02 4.4E-07 54.0 4.6 34 275-308 42-75 (334)
97 PF13437 HlyD_3: HlyD family s 95.3 0.03 6.6E-07 44.3 4.6 33 233-272 1-33 (105)
98 PRK05641 putative acetyl-CoA c 95.2 0.026 5.5E-07 49.8 4.3 32 276-307 85-116 (153)
99 TIGR01000 bacteriocin_acc bact 95.1 0.041 8.8E-07 55.3 6.0 42 267-308 51-92 (457)
100 TIGR01843 type_I_hlyD type I s 95.0 0.036 7.9E-07 53.4 5.3 41 267-307 35-75 (423)
101 PRK09859 multidrug efflux syst 95.0 0.037 8.1E-07 54.1 5.4 54 254-308 41-94 (385)
102 PRK03598 putative efflux pump 95.0 0.048 1E-06 52.0 5.8 41 265-307 35-75 (331)
103 TIGR01936 nqrA NADH:ubiquinone 95.0 0.026 5.6E-07 57.5 4.2 39 252-291 43-81 (447)
104 PRK09578 periplasmic multidrug 94.9 0.041 8.9E-07 53.7 5.4 53 255-308 44-96 (385)
105 PRK15136 multidrug efflux syst 94.9 0.037 8E-07 54.6 4.8 34 275-308 61-94 (390)
106 PRK11556 multidrug efflux syst 94.8 0.047 1E-06 54.3 5.5 54 254-308 67-120 (415)
107 PRK11578 macrolide transporter 94.8 0.054 1.2E-06 52.5 5.7 43 265-308 52-94 (370)
108 PRK09439 PTS system glucose-sp 94.7 0.061 1.3E-06 48.2 5.4 65 232-307 21-124 (169)
109 PRK15030 multidrug efflux syst 94.7 0.053 1.1E-06 53.4 5.4 43 265-308 56-98 (397)
110 TIGR03794 NHPM_micro_HlyD NHPM 94.6 0.06 1.3E-06 53.3 5.6 36 273-308 56-91 (421)
111 PRK05352 Na(+)-translocating N 94.4 0.035 7.7E-07 56.4 3.5 38 252-290 44-81 (448)
112 TIGR01235 pyruv_carbox pyruvat 94.4 0.045 9.6E-07 61.5 4.5 68 232-307 1039-1106(1143)
113 TIGR01945 rnfC electron transp 94.3 0.042 9.1E-07 55.3 3.9 38 252-290 45-82 (435)
114 PF00529 HlyD: HlyD family sec 94.3 0.025 5.5E-07 51.9 2.0 33 233-272 3-35 (305)
115 PF09891 DUF2118: Uncharacteri 94.2 0.06 1.3E-06 47.6 4.1 39 252-290 94-133 (150)
116 PRK10559 p-hydroxybenzoic acid 94.0 0.074 1.6E-06 51.0 4.7 33 276-308 48-80 (310)
117 cd00210 PTS_IIA_glc PTS_IIA, P 93.9 0.19 4.1E-06 43.0 6.5 20 288-307 83-102 (124)
118 PF05896 NQRA: Na(+)-transloca 93.9 0.074 1.6E-06 50.8 4.3 39 252-291 43-81 (257)
119 COG1566 EmrA Multidrug resista 93.6 0.089 1.9E-06 52.1 4.6 33 276-308 54-86 (352)
120 TIGR00999 8a0102 Membrane Fusi 93.4 0.1 2.2E-06 47.4 4.3 32 276-307 89-120 (265)
121 PRK05035 electron transport co 93.2 0.095 2.1E-06 56.1 4.2 38 252-290 51-88 (695)
122 COG4656 RnfC Predicted NADH:ub 93.1 0.067 1.4E-06 55.4 2.9 37 252-290 47-83 (529)
123 TIGR00830 PTBA PTS system, glu 93.0 0.26 5.6E-06 42.0 5.8 20 288-307 83-102 (121)
124 COG0845 AcrA Membrane-fusion p 92.7 0.25 5.3E-06 45.2 5.8 46 262-308 54-99 (372)
125 PRK09783 copper/silver efflux 92.7 0.2 4.3E-06 49.9 5.5 43 265-307 112-156 (409)
126 PF00358 PTS_EIIA_1: phosphoen 92.6 0.2 4.3E-06 43.2 4.7 65 232-307 3-106 (132)
127 KOG3373 Glycine cleavage syste 92.6 0.081 1.8E-06 47.5 2.4 42 254-295 88-129 (172)
128 TIGR03794 NHPM_micro_HlyD NHPM 92.4 0.15 3.2E-06 50.5 4.1 32 276-307 254-285 (421)
129 PF06898 YqfD: Putative stage 91.5 1.8 3.9E-05 43.1 10.6 145 83-287 96-245 (385)
130 PRK10255 PTS system N-acetyl g 91.5 0.38 8.3E-06 51.3 6.2 66 231-307 498-602 (648)
131 PRK14042 pyruvate carboxylase 91.4 0.22 4.7E-06 52.6 4.3 32 276-307 526-557 (596)
132 TIGR00531 BCCP acetyl-CoA carb 90.9 0.18 3.8E-06 44.4 2.6 33 231-270 124-156 (156)
133 PRK09439 PTS system glucose-sp 90.9 0.69 1.5E-05 41.5 6.4 20 252-271 106-125 (169)
134 PRK14875 acetoin dehydrogenase 90.8 0.22 4.7E-06 46.7 3.2 35 232-273 46-80 (371)
135 PRK05305 phosphatidylserine de 90.7 0.37 8.1E-06 43.9 4.6 48 253-304 155-202 (206)
136 PRK06302 acetyl-CoA carboxylas 90.5 0.21 4.6E-06 43.8 2.7 33 231-270 123-155 (155)
137 COG1726 NqrA Na+-transporting 90.5 0.4 8.6E-06 48.2 4.8 39 252-291 43-81 (447)
138 TIGR00164 PS_decarb_rel phosph 90.3 0.45 9.9E-06 42.8 4.8 48 253-304 135-182 (189)
139 PLN02983 biotin carboxyl carri 90.3 0.34 7.3E-06 46.7 4.0 30 278-307 200-236 (274)
140 PRK09824 PTS system beta-gluco 90.2 0.53 1.1E-05 50.0 5.8 64 233-307 480-582 (627)
141 TIGR01995 PTS-II-ABC-beta PTS 90.2 0.69 1.5E-05 48.9 6.6 55 252-306 548-609 (610)
142 PRK14040 oxaloacetate decarbox 89.9 0.36 7.7E-06 50.9 4.2 33 275-307 524-556 (593)
143 TIGR01000 bacteriocin_acc bact 89.8 0.21 4.5E-06 50.2 2.4 33 232-271 60-92 (457)
144 TIGR01108 oadA oxaloacetate de 89.8 0.37 8.1E-06 50.6 4.3 33 275-307 517-549 (582)
145 TIGR02876 spore_yqfD sporulati 89.4 3.4 7.4E-05 41.3 10.5 124 85-267 95-222 (382)
146 PRK09824 PTS system beta-gluco 89.2 0.9 2E-05 48.3 6.7 55 252-306 564-625 (627)
147 cd06663 Biotinyl_lipoyl_domain 89.0 0.32 7E-06 36.2 2.3 31 232-269 43-73 (73)
148 PF07831 PYNP_C: Pyrimidine nu 88.9 0.55 1.2E-05 36.7 3.6 29 235-272 28-56 (75)
149 PRK09282 pyruvate carboxylase 88.7 0.5 1.1E-05 49.8 4.4 33 275-307 522-554 (592)
150 PLN02226 2-oxoglutarate dehydr 88.3 0.35 7.6E-06 49.7 2.8 34 232-272 135-168 (463)
151 COG4770 Acetyl/propionyl-CoA c 87.8 0.55 1.2E-05 49.6 3.8 31 277-307 577-607 (645)
152 PRK10255 PTS system N-acetyl g 87.3 1 2.2E-05 48.2 5.5 43 231-273 535-605 (648)
153 TIGR01995 PTS-II-ABC-beta PTS 87.2 1.3 2.8E-05 46.9 6.2 64 233-307 464-566 (610)
154 PF02666 PS_Dcarbxylase: Phosp 87.0 0.65 1.4E-05 41.9 3.4 64 232-305 137-202 (202)
155 TIGR02712 urea_carbox urea car 85.8 0.82 1.8E-05 51.9 4.2 32 276-307 1133-1164(1201)
156 PTZ00144 dihydrolipoamide succ 85.6 0.58 1.2E-05 47.5 2.6 35 232-273 88-122 (418)
157 PF00358 PTS_EIIA_1: phosphoen 85.2 0.68 1.5E-05 40.0 2.5 23 252-274 88-110 (132)
158 cd06849 lipoyl_domain Lipoyl d 84.9 1.2 2.6E-05 31.0 3.3 28 280-307 11-38 (74)
159 COG0845 AcrA Membrane-fusion p 84.6 0.67 1.4E-05 42.3 2.3 32 233-271 68-99 (372)
160 KOG0559 Dihydrolipoamide succi 83.2 0.91 2E-05 45.7 2.7 34 232-272 116-149 (457)
161 COG4072 Uncharacterized protei 83.2 1.7 3.8E-05 38.4 4.1 50 234-290 94-144 (161)
162 PRK12999 pyruvate carboxylase; 83.2 1.3 2.8E-05 50.1 4.3 32 276-307 1077-1108(1146)
163 PRK05704 dihydrolipoamide succ 82.3 1.1 2.5E-05 45.0 3.1 35 232-273 46-80 (407)
164 COG2190 NagE Phosphotransferas 81.7 1.8 3.9E-05 38.7 3.7 55 252-306 91-153 (156)
165 TIGR01730 RND_mfp RND family e 81.1 1.4 3.1E-05 40.8 3.1 34 231-271 134-167 (322)
166 PRK12784 hypothetical protein; 80.9 1.4 3E-05 35.4 2.5 31 277-307 7-37 (84)
167 TIGR00999 8a0102 Membrane Fusi 80.3 1.5 3.2E-05 39.8 2.9 31 233-270 90-120 (265)
168 COG0508 AceF Pyruvate/2-oxoglu 80.2 1.6 3.6E-05 43.8 3.4 34 232-272 46-79 (404)
169 COG1038 PycA Pyruvate carboxyl 80.1 3.2 6.8E-05 45.9 5.6 31 277-307 1081-1111(1149)
170 TIGR01347 sucB 2-oxoglutarate 79.4 1.6 3.5E-05 43.9 3.1 34 232-272 44-77 (403)
171 PRK14844 bifunctional DNA-dire 79.0 2.4 5.3E-05 51.6 4.7 22 249-270 2421-2442(2836)
172 PF12700 HlyD_2: HlyD family s 77.5 4.2 9.2E-05 37.7 5.1 39 233-271 136-192 (328)
173 PRK03934 phosphatidylserine de 77.3 3 6.6E-05 39.6 4.1 71 233-306 186-265 (265)
174 PLN02528 2-oxoisovalerate dehy 74.7 2.8 6E-05 42.3 3.2 35 232-273 42-76 (416)
175 PRK03140 phosphatidylserine de 74.4 2.6 5.5E-05 40.0 2.7 64 233-306 195-258 (259)
176 KOG0238 3-Methylcrotonyl-CoA c 73.1 2.9 6.2E-05 44.0 2.9 30 278-307 604-633 (670)
177 KOG0369 Pyruvate carboxylase [ 72.5 2.8 6E-05 45.6 2.7 32 276-307 1107-1138(1176)
178 TIGR00830 PTBA PTS system, glu 72.0 2.6 5.6E-05 36.0 1.9 21 252-272 84-104 (121)
179 COG3608 Predicted deacylase [G 71.8 4.3 9.4E-05 40.2 3.7 31 277-308 258-288 (331)
180 TIGR03309 matur_yqeB selenium- 71.3 4.4 9.6E-05 38.9 3.5 35 272-307 161-195 (256)
181 KOG0368 Acetyl-CoA carboxylase 71.1 5.5 0.00012 46.6 4.7 52 256-307 666-717 (2196)
182 PF02749 QRPTase_N: Quinolinat 70.9 3.6 7.8E-05 32.5 2.5 20 252-271 49-68 (88)
183 TIGR01349 PDHac_trf_mito pyruv 69.9 4 8.6E-05 41.5 3.1 34 232-272 43-77 (435)
184 PRK02597 rpoC2 DNA-directed RN 69.9 10 0.00023 43.8 6.6 36 252-287 405-447 (1331)
185 PRK04192 V-type ATP synthase s 68.5 8.2 0.00018 41.0 5.1 54 252-307 122-178 (586)
186 PRK11856 branched-chain alpha- 68.3 5 0.00011 40.0 3.4 35 232-273 46-80 (411)
187 cd00210 PTS_IIA_glc PTS_IIA, P 67.4 3.7 8.1E-05 35.1 2.0 20 252-271 84-103 (124)
188 COG2190 NagE Phosphotransferas 66.8 21 0.00045 32.0 6.6 66 232-307 43-109 (156)
189 cd06251 M14_ASTE_ASPA_like_1 A 65.5 7.8 0.00017 36.8 3.9 34 273-307 217-250 (287)
190 cd06255 M14_ASTE_ASPA_like_5 A 65.1 7.9 0.00017 37.0 3.9 32 275-307 231-262 (293)
191 cd01134 V_A-ATPase_A V/A-type 65.1 14 0.00031 37.2 5.8 53 252-306 53-108 (369)
192 PRK11637 AmiB activator; Provi 64.5 9.1 0.0002 38.3 4.4 40 232-271 340-400 (428)
193 TIGR02645 ARCH_P_rylase putati 64.3 11 0.00023 39.4 4.9 42 266-307 404-469 (493)
194 cd06253 M14_ASTE_ASPA_like_3 A 63.7 8.1 0.00017 37.1 3.7 32 275-307 229-260 (298)
195 PLN02744 dihydrolipoyllysine-r 62.8 6.6 0.00014 41.3 3.1 26 282-307 125-150 (539)
196 PF01551 Peptidase_M23: Peptid 62.7 6.5 0.00014 30.7 2.4 21 252-272 55-75 (96)
197 cd06250 M14_PaAOTO_like An unc 62.4 9.4 0.0002 37.8 4.0 31 276-307 290-320 (359)
198 cd06254 M14_ASTE_ASPA_like_4 A 61.7 10 0.00022 36.0 4.0 34 273-307 221-254 (288)
199 COG1155 NtpA Archaeal/vacuolar 61.0 19 0.0004 38.2 5.9 55 252-307 120-176 (588)
200 TIGR02971 heterocyst_DevB ABC 60.5 10 0.00022 35.9 3.8 32 231-270 204-235 (327)
201 PF01551 Peptidase_M23: Peptid 60.0 13 0.00028 29.0 3.7 59 233-307 15-73 (96)
202 TIGR01042 V-ATPase_V1_A V-type 60.0 19 0.00041 38.5 5.9 53 253-307 123-178 (591)
203 TIGR02994 ectoine_eutE ectoine 59.8 11 0.00024 36.8 4.0 30 277-307 257-286 (325)
204 PF07831 PYNP_C: Pyrimidine nu 59.6 7.3 0.00016 30.3 2.2 24 282-307 31-54 (75)
205 COG1443 Idi Isopentenyldiphosp 59.0 4.6 0.0001 37.0 1.1 30 54-83 118-155 (185)
206 PF06898 YqfD: Putative stage 58.4 10 0.00022 37.8 3.5 34 272-305 186-226 (385)
207 PRK11892 pyruvate dehydrogenas 58.2 9.3 0.0002 39.3 3.2 34 232-272 46-80 (464)
208 PRK09603 bifunctional DNA-dire 58.2 13 0.00027 46.0 4.7 22 248-269 2612-2633(2890)
209 PRK04350 thymidine phosphoryla 57.8 17 0.00036 38.0 5.0 40 268-307 398-461 (490)
210 TIGR02644 Y_phosphoryl pyrimid 57.7 9.9 0.00021 38.6 3.3 41 231-271 333-397 (405)
211 TIGR02876 spore_yqfD sporulati 57.1 10 0.00022 38.0 3.2 32 274-305 185-223 (382)
212 PRK14698 V-type ATP synthase s 56.7 21 0.00045 40.4 5.8 54 252-307 122-178 (1017)
213 PRK10871 nlpD lipoprotein NlpD 56.7 16 0.00034 36.1 4.4 19 288-306 271-289 (319)
214 cd06252 M14_ASTE_ASPA_like_2 A 56.2 20 0.00044 34.6 5.0 33 274-307 243-275 (316)
215 PF05896 NQRA: Na(+)-transloca 54.7 7.2 0.00016 37.4 1.7 28 278-305 32-59 (257)
216 cd06910 M14_ASTE_ASPA_like_7 A 54.0 23 0.0005 33.4 4.9 47 253-306 225-272 (272)
217 TIGR03327 AMP_phos AMP phospho 53.6 21 0.00045 37.4 4.8 39 269-307 408-470 (500)
218 PRK02597 rpoC2 DNA-directed RN 51.6 17 0.00036 42.2 4.2 23 247-269 947-969 (1331)
219 TIGR00163 PS_decarb phosphatid 51.5 11 0.00023 35.3 2.2 48 257-305 189-236 (238)
220 COG4942 Membrane-bound metallo 51.1 20 0.00042 36.8 4.1 37 266-306 354-390 (420)
221 PRK02259 aspartoacylase; Provi 51.0 11 0.00023 36.1 2.2 61 233-304 216-281 (288)
222 TIGR01043 ATP_syn_A_arch ATP s 50.1 33 0.00071 36.6 5.7 52 253-306 120-174 (578)
223 TIGR02643 T_phosphoryl thymidi 50.0 11 0.00025 38.6 2.3 41 231-271 339-403 (437)
224 PRK05820 deoA thymidine phosph 49.5 12 0.00026 38.5 2.4 41 231-271 340-404 (440)
225 PRK10871 nlpD lipoprotein NlpD 48.9 21 0.00045 35.3 3.8 40 232-271 230-291 (319)
226 PRK05820 deoA thymidine phosph 48.7 27 0.00058 36.0 4.7 37 271-307 336-403 (440)
227 PF02749 QRPTase_N: Quinolinat 47.9 14 0.00029 29.2 2.0 24 284-307 44-67 (88)
228 TIGR02644 Y_phosphoryl pyrimid 46.8 32 0.00069 35.1 4.9 38 270-307 328-396 (405)
229 PRK06078 pyrimidine-nucleoside 46.6 14 0.0003 37.9 2.3 42 231-272 335-400 (434)
230 COG0157 NadC Nicotinate-nucleo 46.4 14 0.0003 36.0 2.2 21 252-272 68-88 (280)
231 PRK09603 bifunctional DNA-dire 46.2 26 0.00056 43.5 4.7 18 289-306 2616-2633(2890)
232 KOG0557 Dihydrolipoamide acety 44.6 18 0.0004 37.5 2.8 26 283-308 52-77 (470)
233 CHL00117 rpoC2 RNA polymerase 43.9 26 0.00056 40.9 4.1 40 249-288 403-450 (1364)
234 TIGR02645 ARCH_P_rylase putati 43.2 15 0.00033 38.3 2.0 41 231-271 413-470 (493)
235 PRK04350 thymidine phosphoryla 42.3 16 0.00035 38.0 2.1 41 231-271 405-462 (490)
236 PRK00044 psd phosphatidylserin 41.9 22 0.00047 34.2 2.8 50 256-307 236-286 (288)
237 TIGR02643 T_phosphoryl thymidi 41.0 42 0.00092 34.6 4.8 19 289-307 384-402 (437)
238 TIGR03327 AMP_phos AMP phospho 40.8 18 0.0004 37.8 2.2 41 231-271 414-471 (500)
239 cd06848 GCS_H Glycine cleavage 40.6 25 0.00054 28.0 2.5 27 281-307 26-53 (96)
240 PF12631 GTPase_Cys_C: Catalyt 39.1 11 0.00024 28.8 0.2 9 75-83 65-73 (73)
241 KOG1668 Elongation factor 1 be 38.4 23 0.00049 33.7 2.2 40 233-277 167-207 (231)
242 COG0739 NlpD Membrane proteins 38.0 24 0.00052 32.0 2.3 20 251-270 215-234 (277)
243 TIGR02388 rpoC2_cyan DNA-direc 37.5 34 0.00074 39.5 3.7 23 247-269 945-967 (1227)
244 PF09891 DUF2118: Uncharacteri 37.0 23 0.00051 31.4 1.9 40 257-307 73-112 (150)
245 PRK06078 pyrimidine-nucleoside 35.9 57 0.0012 33.6 4.8 19 289-307 380-398 (434)
246 COG4072 Uncharacterized protei 35.3 69 0.0015 28.5 4.6 27 281-307 97-123 (161)
247 PRK14844 bifunctional DNA-dire 34.8 68 0.0015 40.1 5.7 57 252-308 2322-2443(2836)
248 PRK06149 hypothetical protein; 34.2 49 0.0011 36.9 4.4 41 231-271 442-496 (972)
249 PF03213 Pox_P35: Poxvirus P35 33.2 25 0.00054 34.9 1.6 30 135-164 131-160 (325)
250 PRK05305 phosphatidylserine de 32.0 1.1E+02 0.0023 27.9 5.5 76 231-307 91-172 (206)
251 TIGR00164 PS_decarb_rel phosph 31.5 1E+02 0.0022 27.7 5.2 69 231-307 72-152 (189)
252 cd01572 QPRTase Quinolinate ph 31.2 34 0.00075 32.6 2.2 20 252-271 62-81 (268)
253 PF13375 RnfC_N: RnfC Barrel s 30.6 78 0.0017 26.0 3.9 24 283-306 38-61 (101)
254 KOG2419 Phosphatidylserine dec 30.5 23 0.0005 38.5 1.0 34 232-273 886-919 (975)
255 PRK08072 nicotinate-nucleotide 29.7 37 0.00081 32.7 2.2 20 252-271 68-87 (277)
256 PRK10718 RpoE-regulated lipopr 29.5 1E+02 0.0022 28.6 4.9 54 233-297 59-115 (191)
257 CHL00117 rpoC2 RNA polymerase 29.2 1.3E+02 0.0027 35.5 6.5 74 232-308 350-425 (1364)
258 PRK13380 glycine cleavage syst 29.1 48 0.001 28.9 2.6 32 276-307 36-68 (144)
259 PF12166 DUF3595: Protein of u 27.9 18 0.00039 36.0 -0.3 16 67-82 22-37 (422)
260 PF01333 Apocytochr_F_C: Apocy 27.9 21 0.00045 30.7 0.1 35 233-267 27-61 (118)
261 PRK06096 molybdenum transport 26.5 45 0.00098 32.3 2.2 20 252-271 65-84 (284)
262 PRK06543 nicotinate-nucleotide 26.5 45 0.00098 32.4 2.1 20 252-271 69-88 (281)
263 PRK05742 nicotinate-nucleotide 26.1 47 0.001 32.0 2.2 20 252-271 70-89 (277)
264 TIGR02388 rpoC2_cyan DNA-direc 25.4 75 0.0016 36.9 3.9 36 252-287 405-447 (1227)
265 cd01568 QPRTase_NadC Quinolina 24.3 53 0.0011 31.2 2.2 20 252-271 61-80 (269)
266 PRK05848 nicotinate-nucleotide 24.3 53 0.0012 31.6 2.2 20 252-271 62-81 (273)
267 PRK11637 AmiB activator; Provi 24.3 1.3E+02 0.0028 30.2 5.0 18 289-306 381-398 (428)
268 PRK07428 nicotinate-nucleotide 24.3 54 0.0012 31.8 2.2 20 252-271 76-95 (288)
269 cd01573 modD_like ModD; Quinol 24.0 55 0.0012 31.2 2.2 20 252-271 60-79 (272)
270 PRK06978 nicotinate-nucleotide 23.7 55 0.0012 32.0 2.2 20 252-271 86-105 (294)
271 PRK11649 putative peptidase; P 23.7 62 0.0013 33.1 2.6 19 252-270 365-383 (439)
272 PLN02964 phosphatidylserine de 23.2 58 0.0013 35.2 2.4 34 232-273 555-588 (644)
273 cd01572 QPRTase Quinolinate ph 22.8 85 0.0018 29.9 3.2 25 283-307 56-80 (268)
274 PRK07896 nicotinate-nucleotide 22.7 60 0.0013 31.6 2.2 20 252-271 80-99 (289)
275 PRK06106 nicotinate-nucleotide 22.7 60 0.0013 31.5 2.2 20 252-271 74-93 (281)
276 PLN02716 nicotinate-nucleotide 22.6 60 0.0013 32.0 2.2 20 252-271 82-101 (308)
277 cd00291 SirA_YedF_YeeD SirA, Y 22.5 1.8E+02 0.0038 21.0 4.2 31 139-169 37-69 (69)
278 COG0261 RplU Ribosomal protein 22.4 1.2E+02 0.0026 25.6 3.6 15 290-304 40-54 (103)
279 PRK09016 quinolinate phosphori 22.4 61 0.0013 31.8 2.2 20 252-271 89-108 (296)
280 PF06670 Etmic-2: Microneme pr 22.1 39 0.00084 32.9 0.8 33 59-91 209-256 (379)
281 PF06572 DUF1131: Protein of u 22.1 93 0.002 28.4 3.1 44 254-297 49-95 (171)
282 COG0688 Psd Phosphatidylserine 21.7 96 0.0021 29.3 3.3 68 231-306 124-203 (239)
283 cd03695 CysN_NodQ_II CysN_NodQ 21.7 2.3E+02 0.005 21.7 5.0 60 238-304 18-80 (81)
284 PRK08385 nicotinate-nucleotide 21.5 66 0.0014 31.1 2.2 20 252-271 62-81 (278)
285 COG0213 DeoA Thymidine phospho 21.3 82 0.0018 32.6 2.9 20 252-271 381-400 (435)
286 PF01206 TusA: Sulfurtransfera 21.2 1E+02 0.0022 22.6 2.8 30 140-169 39-70 (70)
287 TIGR01334 modD putative molybd 20.3 71 0.0015 30.9 2.2 20 252-271 64-83 (277)
288 PF04952 AstE_AspA: Succinylgl 20.3 1.2E+02 0.0027 28.1 3.8 31 275-306 220-252 (292)
289 TIGR00078 nadC nicotinate-nucl 20.3 72 0.0016 30.4 2.2 20 252-271 58-77 (265)
290 PRK06148 hypothetical protein; 20.2 57 0.0012 36.7 1.7 18 254-271 505-522 (1013)
No 1
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=100.00 E-value=5e-51 Score=380.12 Aligned_cols=266 Identities=63% Similarity=0.949 Sum_probs=215.1
Q ss_pred CCCCCCCCCCCccccccccCCcccceeecceEEEEecCCCCCceeeecCCCCCCcccceEeeeccccccccccchhhhhc
Q 021721 1 MASSSLATGTPSASAFSKNSSSLVHYYRNGTVFFRLSSSKPKLRFFAKGSQPSWKCATVVKSQLNEVSFFQWFSFEDIFS 80 (308)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (308)
|||++.++...+ .++++.. +++++++||++ +||+|||++||+++++..+++|||||||
T Consensus 1 mas~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~a~~ne-------------- 58 (274)
T PLN02983 1 MASLSVPCAKTA--AAAANVG-----SRLSRSSFRLQ-PKPNISFPSKGPNPKRSAVPKVKAQLNE-------------- 58 (274)
T ss_pred CCccccCcccce--eeccccc-----ccccccccccC-CCCCcccccCCCCcccceeeeEEeeece--------------
Confidence 788765554333 3444333 45568899999 9999999999999999999999999999
Q ss_pred chhhhcccccCCCceeEEEecCCCCCCCCCc-------cccccCCCCCCCCCCCccccccccccHHHHHHHHHHHhhCCC
Q 021721 81 NFRSFLDSLLGTPVEFKVAFDGSSNASATPA-------AETKDAKQPNEPSPSILASEESISEFISQVSSLIKLVDSRDI 153 (308)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~qI~eLIklld~S~I 153 (308)
|+++||||++++.. .+++|.+.+++++++.++++++|+.|+.|+..|||++|.+||
T Consensus 59 -----------------~~~~~~sn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~f~~qv~~lv~lv~~~di 121 (274)
T PLN02983 59 -----------------VAVDGSSNSAKSDDPKSEVAPSEPKDEPPSNSSSKPNLPDEESISEFMTQVSSLVKLVDSRDI 121 (274)
T ss_pred -----------------eeeccccccccccCCcccccccccccccccccCCCcccCCHHHHHHHHHHHHHHHhhhccccc
Confidence 99999999998843 578888999999999999999999999999999999999999
Q ss_pred cEEEEEeCCeEEEEEecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC
Q 021721 154 VELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAP-SASPAPPASPPSSTAGKSVKSSLP 232 (308)
Q Consensus 154 ~ELeLk~~d~~L~LrK~~~~~~~~~~a~~~~~~sp~~~p~ap~~~~~pa~a~~ap-~a~~a~pa~~~~~~~~~~~~~~~~ 232 (308)
.||+||+.||+|.|||+++.+++.+++++++|+.+.+...++..+ ++. .+++ .+..+.+...+...+.+...++..
T Consensus 122 ~e~~lk~~~~e~~irkkeal~~~~~~~~~~~~~~~~~~~~~p~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 198 (274)
T PLN02983 122 VELQLKQLDCELVIRKKEALPQPPPPAPVVMMQPPPPHAMPPASP--PAA-QPAPSAPASSPPPTPASPPPAKAPKSSHP 198 (274)
T ss_pred eeeeccccceEEEEecccccCCCCCCCceEEecCCCcccCCCCCC--ccc-CCCCCCCCCCCCCCCCCCCCCCCCcCCCC
Confidence 999999999999999999987765556666666554432222211 110 1111 000011111112233445567778
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 233 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 233 ~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
.|+|||.|+||+.|.+++.|+|++||.|++||+||+||+||++++|+|+++|+|.+|++++||.|.+|++|++|+|
T Consensus 199 ~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IEP 274 (274)
T PLN02983 199 PLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIEP 274 (274)
T ss_pred eEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.97 E-value=1.1e-30 Score=227.56 Aligned_cols=156 Identities=43% Similarity=0.709 Sum_probs=112.9
Q ss_pred ccHHHHHHHHHHHhhCCCcEEEEEeCCeEEEEEecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021721 136 EFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPP 215 (308)
Q Consensus 136 ~~i~qI~eLIklld~S~I~ELeLk~~d~~L~LrK~~~~~~~~~~a~~~~~~sp~~~p~ap~~~~~pa~a~~ap~a~~a~p 215 (308)
|++++|++||++|++++|+||+|+.+|++|+|+|+...... ...... . ++... + .+.+....+. .+
T Consensus 1 Md~~~Ik~Li~~~~~s~l~elei~~~~~~l~l~k~~~~~~~-~~~~~~--~----~~~~~--~-~~~~~~~~~~----~~ 66 (156)
T TIGR00531 1 MNIREIKELIKLIEESGITELELKEEEFEVRLSKAAAAAKK-SAVQQA--A----APVPA--Q-VPAAPSAQAP----AP 66 (156)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEeCCEEEEEEecCCCCcc-cccccc--C----CCccc--c-CCCCCCCCCC----CC
Confidence 58999999999999999999999999999999996432110 000000 0 00000 0 0000000000 00
Q ss_pred CCCCCCCCCCCCCCCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCC
Q 021721 216 ASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK 295 (308)
Q Consensus 216 a~~~~~~~~~~~~~~~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd 295 (308)
+ ...+.......+...|+|||+|+||++++|+.+|+|++||.|++||+||+||+||++++|+|+++|+|.+|++++|+
T Consensus 67 ~--~~~~~~~~~~~~~~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~ 144 (156)
T TIGR00531 67 A--VCAPAPAKADKKGHFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQ 144 (156)
T ss_pred C--CCCCCcccccCCCCEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCC
Confidence 0 00000011112335799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEc
Q 021721 296 PVSVDTPLFVIE 307 (308)
Q Consensus 296 ~V~~GqpL~~Ie 307 (308)
.|++||+||+|+
T Consensus 145 ~V~~Gq~L~~i~ 156 (156)
T TIGR00531 145 PVEYGQPLIVIE 156 (156)
T ss_pred EECCCCEEEEEC
Confidence 999999999985
No 3
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.97 E-value=5.1e-30 Score=223.11 Aligned_cols=155 Identities=45% Similarity=0.768 Sum_probs=113.0
Q ss_pred ccHHHHHHHHHHHhhCCCcEEEEEeCCeEEEEEecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021721 136 EFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPP 215 (308)
Q Consensus 136 ~~i~qI~eLIklld~S~I~ELeLk~~d~~L~LrK~~~~~~~~~~a~~~~~~sp~~~p~ap~~~~~pa~a~~ap~a~~a~p 215 (308)
|++++|++||++|++++|+||+|+.+|++|+|+|+...... +........ +..+ .+++..+... .+
T Consensus 1 Md~~~I~~Li~~~~~s~l~ele~~~~~~~i~l~k~~~~~~~--~~~~~~~~~----p~~~----~~~~~~~~~~----~~ 66 (155)
T PRK06302 1 MDIRKIKKLIELVDESGISEFEIKEGEESVRISRAAAAPVA--PVAQQAAAA----PVAA----APAAAAAAAA----AP 66 (155)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEEcCCEEEEEEeCCCCCcc--ccccccccC----CCCC----CCCCCCcccc----CC
Confidence 58999999999999999999999999999999996432110 000000000 0000 0000000000 00
Q ss_pred CCCCCCCCCCCCCCCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCC
Q 021721 216 ASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK 295 (308)
Q Consensus 216 a~~~~~~~~~~~~~~~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd 295 (308)
...+ . ......+...|+|||+|+||++|+|+.+|+|++||.|++||+||+||+||++++|+|+++|+|.++++++|+
T Consensus 67 ~~~~--~-~~~~~~~~~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~ 143 (155)
T PRK06302 67 AAAP--A-AAAAEAEGHVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQ 143 (155)
T ss_pred CCCC--C-CCccCCCCCEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCC
Confidence 0000 0 011112335799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEc
Q 021721 296 PVSVDTPLFVIE 307 (308)
Q Consensus 296 ~V~~GqpL~~Ie 307 (308)
.|++||+||+|+
T Consensus 144 ~V~~Gq~L~~i~ 155 (155)
T PRK06302 144 PVEFGQPLFVIE 155 (155)
T ss_pred EeCCCCEEEEeC
Confidence 999999999985
No 4
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.94 E-value=1e-26 Score=199.28 Aligned_cols=140 Identities=41% Similarity=0.649 Sum_probs=100.8
Q ss_pred HHHHHHHHhhCCCcEEEEEeCCeEEEEEecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021721 141 VSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPS 220 (308)
Q Consensus 141 I~eLIklld~S~I~ELeLk~~d~~L~LrK~~~~~~~~~~a~~~~~~sp~~~p~ap~~~~~pa~a~~ap~a~~a~pa~~~~ 220 (308)
|++|++.++++++.+++++.++.+++++++....+. ...... . .... +......+.+. .+. +
T Consensus 1 i~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~---~----~~~~-----~~~~~~~~~~~--~~~--~- 62 (140)
T COG0511 1 IKELIKLVVESDGTEFEVKVEEGEVRLSRKTPVVQD-VPAPAP---I----EASS-----PSAAAAQPAAS--APA--P- 62 (140)
T ss_pred CcchhhheeeeCcEEEEEEeCCcEEEEeeccccccc-cccccc---c----cccc-----ccccccCcccc--ccc--C-
Confidence 468999999999999999999999999997611110 000000 0 0000 00000000000 000 0
Q ss_pred CCCCCCCCCCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCC
Q 021721 221 STAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVD 300 (308)
Q Consensus 221 ~~~~~~~~~~~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~G 300 (308)
. . ....+...|+|||+|+||+ .||++||+|++||+||+||+|||+++|.||.+|+|++|++++||.|++|
T Consensus 63 -~-~-~~~~~~~~V~SPm~Gtv~~-------~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G 132 (140)
T COG0511 63 -A-P-AAAAGGTQVTSPMVGTVYK-------PFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYG 132 (140)
T ss_pred -C-c-cccccCceEecCcceEEEE-------EeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCC
Confidence 0 0 0001456899999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEcC
Q 021721 301 TPLFVIEP 308 (308)
Q Consensus 301 qpL~~Iep 308 (308)
|+|++|++
T Consensus 133 ~~L~~I~~ 140 (140)
T COG0511 133 DPLAVIEP 140 (140)
T ss_pred CEEEEecC
Confidence 99999985
No 5
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.69 E-value=7.5e-17 Score=122.61 Aligned_cols=68 Identities=21% Similarity=0.379 Sum_probs=66.2
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 233 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 233 ~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.|+||+.|++++ |+|++||.|++||+||.||+||+.++|+||.+|+|.++++++|+.|..|++|++|.
T Consensus 4 ~v~a~~~G~i~~-------~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 4 DVRAEIVASVLE-------VVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred EEeCCCCEEEEE-------EEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 589999999999 99999999999999999999999999999999999999999999999999999984
No 6
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.68 E-value=2.2e-17 Score=126.74 Aligned_cols=73 Identities=38% Similarity=0.510 Sum_probs=67.5
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021721 233 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 233 ~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~I 306 (308)
+|++|+.|.+++.. ....|+|++||.|++||+||.||+||+.++|+||++|+|.++++++|+.|.+|++|++|
T Consensus 2 ~i~~P~~G~~~~~~-~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 2 EIKAPMLGEVMEEG-TITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEESSSSEEEEEE-EEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred EEECCCCccEEEec-ceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 47899999887744 55569999999999999999999999999999999999999999999999999999987
No 7
>PRK07051 hypothetical protein; Validated
Probab=99.67 E-value=3e-16 Score=122.31 Aligned_cols=76 Identities=45% Similarity=0.823 Sum_probs=73.6
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|+||+.|+|++++.|..+++|++||.|++||+|+.||+||+.++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 4 ~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 4 HEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred cEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999985
No 8
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.65 E-value=3.6e-16 Score=118.06 Aligned_cols=69 Identities=35% Similarity=0.506 Sum_probs=66.8
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|+||++|+|++ |++++||+|++||+|+.||+||+..+|.++.+|+|.++++++|+.|..|++|++|+
T Consensus 2 ~~i~a~~~G~i~~-------~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 2 TKVYASMAGNVWK-------IVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CeEeCCCCEEEEE-------EEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 3689999999999 99999999999999999999999999999999999999999999999999999985
No 9
>PRK06748 hypothetical protein; Validated
Probab=99.64 E-value=5.9e-16 Score=123.05 Aligned_cols=69 Identities=22% Similarity=0.255 Sum_probs=66.1
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEe-cceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA-MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEa-mK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|+|||+|++.+ |++++||.|++||+|++||+ +|.+.+|+||.+|+|.++++++||.|..|++|++|+
T Consensus 5 ~~v~sp~~G~I~~-------w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~ 74 (83)
T PRK06748 5 EGVYSPCYGKVEK-------LFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVR 74 (83)
T ss_pred eEEecCCcEEEEE-------EEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 3689999999999 99999999999999999999 678899999999999999999999999999999986
No 10
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.63 E-value=8.8e-15 Score=124.94 Aligned_cols=71 Identities=37% Similarity=0.515 Sum_probs=68.0
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 230 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 230 ~~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
+...|++|+.|++.+ |+|++||.|++||+|++||+|||.++|.||++|+|.+++++.||.|..|++|++|.
T Consensus 60 ~~~~v~Ap~~G~V~~-------i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 130 (130)
T PRK06549 60 GADAMPSPMPGTILK-------VLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITIG 130 (130)
T ss_pred CCcEEECCCCEEEEE-------EEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEeC
Confidence 456799999999999 99999999999999999999999999999999999999999999999999999873
No 11
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.60 E-value=1.6e-14 Score=126.31 Aligned_cols=70 Identities=34% Similarity=0.573 Sum_probs=67.5
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021721 230 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 230 ~~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~I 306 (308)
+...|+||+.|++.+ |+|++||.|++||+|++||+|||.++|.|+.+|+|.++++++|+.|..|++|++|
T Consensus 83 ~~~~v~ap~~G~I~~-------~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 83 GENVVTAPMPGKILR-------ILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCCEEECCCCeEEEE-------EEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 345799999999999 9999999999999999999999999999999999999999999999999999987
No 12
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.54 E-value=3.2e-14 Score=103.49 Aligned_cols=67 Identities=39% Similarity=0.630 Sum_probs=64.6
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021721 233 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 233 ~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~I 306 (308)
.|+||+.|++.+ |++++||.|++||.|+.|+++|+..+|+||++|+|.++++++|+.|..|++|+.|
T Consensus 1 ~v~a~~~G~v~~-------~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 1 EVTAPMPGTVVK-------VLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred CccCCccEEEEE-------EEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 479999999998 9999999999999999999999999999999999999999999999999999975
No 13
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.44 E-value=2.3e-13 Score=140.47 Aligned_cols=71 Identities=30% Similarity=0.480 Sum_probs=68.1
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 230 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 230 ~~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
+...|+|||+|++.+ |+|++||.|++||+|++||+|||+++|.||++|+|.++++++|+.|..|++|++|+
T Consensus 524 ~~~~v~apm~G~V~~-------~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~ 594 (596)
T PRK14042 524 GPGDITVAIPGSIIA-------IHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVE 594 (596)
T ss_pred CCCeEecCcceEEEE-------EEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEe
Confidence 344799999999999 99999999999999999999999999999999999999999999999999999986
No 14
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.37 E-value=1.1e-12 Score=122.25 Aligned_cols=64 Identities=31% Similarity=0.435 Sum_probs=61.4
Q ss_pred cCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 238 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 238 m~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
..|++.+ |+|++||.|++||+||+||+||+.++|+||.+|+|.++++++|+.|..|++|++|++
T Consensus 15 ~~g~~~~-------~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~ 78 (371)
T PRK14875 15 TEGKVAG-------WLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVAD 78 (371)
T ss_pred ceEEEEE-------EEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEec
Confidence 4699999 999999999999999999999999999999999999999999999999999999863
No 15
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=99.37 E-value=1.2e-12 Score=134.92 Aligned_cols=73 Identities=38% Similarity=0.582 Sum_probs=70.0
Q ss_pred CCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 229 SSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 229 ~~~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
.+...|+||+.|+|.+ |+|++||.|++||+|++||+|||.++|+||.+|+|.++++++|+.|..|++|++|+|
T Consensus 520 ~~~~~V~Ap~~G~v~~-------~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~~ 592 (592)
T PRK09282 520 SAPGAVTSPMPGTVVK-------VKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIEP 592 (592)
T ss_pred CCCceEeCCCcEEEEE-------EEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEecC
Confidence 4456899999999999 999999999999999999999999999999999999999999999999999999986
No 16
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.36 E-value=2.9e-12 Score=96.55 Aligned_cols=61 Identities=44% Similarity=0.664 Sum_probs=58.8
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021721 239 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 239 ~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~I 306 (308)
.|++++ |++++||.|++||.|+.||+||+..+|+||++|+|.+++++.|+.|..|++|++|
T Consensus 13 ~g~~~~-------~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 13 DGTVVK-------WLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CEEEEE-------EEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 588988 9999999999999999999999999999999999999999999999999999985
No 17
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=99.35 E-value=1.8e-12 Score=133.47 Aligned_cols=67 Identities=39% Similarity=0.575 Sum_probs=64.2
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeE
Q 021721 230 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPL 303 (308)
Q Consensus 230 ~~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL 303 (308)
+...|+|||+|++++ |+|++||.|++||+|++||+|||+++|.||.+|+|.++++++|+.|..|++|
T Consensus 516 ~~~~v~ap~~G~v~~-------~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 516 AGTPVTAPIAGSIVK-------VKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred CCCeEeCCccEEEEE-------EEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 345799999999999 9999999999999999999999999999999999999999999999999986
No 18
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=99.33 E-value=2.7e-12 Score=132.51 Aligned_cols=70 Identities=34% Similarity=0.607 Sum_probs=67.3
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
...|+|||.|+|++ |+|++||.|++||+||+||+|||.++|.||.+|+|.++++++|+.|..|++|++|.
T Consensus 524 ~~~V~Ap~~G~I~~-------~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 593 (593)
T PRK14040 524 GEPVTAPLAGNIFK-------VIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA 593 (593)
T ss_pred CceEECCccEEEEE-------EEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 35799999999999 99999999999999999999999999999999999999999999999999999873
No 19
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.32 E-value=3.6e-12 Score=140.28 Aligned_cols=72 Identities=32% Similarity=0.531 Sum_probs=69.2
Q ss_pred CCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 229 SSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 229 ~~~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.+...|.|||.|++++ |+|++||.|++||+|++||+|||.++|.||.+|+|+++++++|+.|..||+|+.|+
T Consensus 1130 ~~~~~v~a~~~G~v~~-------~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1130 EGAEQVESEYAGNFWK-------VLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred CCCcEEeCCceEEEEE-------EEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 4567899999999999 99999999999999999999999999999999999999999999999999999985
No 20
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=99.32 E-value=3e-12 Score=128.79 Aligned_cols=63 Identities=29% Similarity=0.398 Sum_probs=60.4
Q ss_pred cCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 238 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 238 m~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|++++ |+|++||.|++||+||+||+||+.++|+||++|+|.+|++++||.|..|++|++|+
T Consensus 104 ~eG~I~~-------w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~ 166 (463)
T PLN02226 104 TDGTLAT-------FLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIIS 166 (463)
T ss_pred ceEEEEE-------EEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEec
Confidence 3578888 99999999999999999999999999999999999999999999999999999985
No 21
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.31 E-value=3.9e-12 Score=139.41 Aligned_cols=73 Identities=30% Similarity=0.505 Sum_probs=69.2
Q ss_pred CCCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 228 KSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 228 ~~~~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..+...|.|||.|++.+ |+|++||.|++||+|++||+|||+++|.||.+|+|.++++++|+.|+.|++|++|+
T Consensus 1071 ~~~~~~I~a~~~G~v~~-------~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1071 PGNPAHVGAPMPGVIIE-------VKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred cccCceeecCCCcEEEE-------EEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 34456899999999999 99999999999999999999999999999999999999999999999999999985
No 22
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.27 E-value=7.5e-12 Score=137.28 Aligned_cols=72 Identities=32% Similarity=0.502 Sum_probs=69.0
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 230 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 230 ~~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
+...|.|||.|++.+ ++|++||.|++||+|++||+|||+++|.||.+|+|.++++++|+.|+.|+.|++|++
T Consensus 1075 ~~~~v~apm~G~v~~-------i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~~ 1146 (1146)
T PRK12999 1075 NPGHVGAPMPGSVVT-------VLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELEP 1146 (1146)
T ss_pred CCceEeCCceEEEEE-------EEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEcC
Confidence 345799999999999 999999999999999999999999999999999999999999999999999999975
No 23
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=99.27 E-value=7e-12 Score=127.87 Aligned_cols=72 Identities=35% Similarity=0.508 Sum_probs=68.7
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 230 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 230 ~~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
....|.|||+|++.. +.|++|+.|.+||+|+++|+|||++.|+||.+|+|.++.++.|+.|..|++|+++++
T Consensus 574 ~~~~l~aPMpG~v~~-------v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~~ 645 (645)
T COG4770 574 SSGELLAPMPGTVVS-------VAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFEE 645 (645)
T ss_pred CCCceecCCCceEEE-------EEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEecC
Confidence 345799999999999 899999999999999999999999999999999999999999999999999999875
No 24
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=99.27 E-value=9.5e-12 Score=123.90 Aligned_cols=62 Identities=42% Similarity=0.579 Sum_probs=60.1
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 239 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 239 ~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.|++.+ |+|++||.|++||+||+||+||+.++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 58 eg~I~~-------w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~ 119 (418)
T PTZ00144 58 EGTVVE-------WKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEID 119 (418)
T ss_pred eEEEEE-------EEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEc
Confidence 588888 99999999999999999999999999999999999999999999999999999986
No 25
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=99.23 E-value=1.6e-11 Score=121.64 Aligned_cols=62 Identities=34% Similarity=0.493 Sum_probs=60.1
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 239 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 239 ~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
-|++.+ |++++||.|++||+|++||++|..+||.||++|+|.+|++++|+.|..|++|++|+
T Consensus 16 EG~I~~-------W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~ 77 (404)
T COG0508 16 EGTIVE-------WLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIE 77 (404)
T ss_pred eEEEEE-------EecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEe
Confidence 588888 99999999999999999999999999999999999999999999999999999986
No 26
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.22 E-value=1.3e-11 Score=129.80 Aligned_cols=77 Identities=35% Similarity=0.505 Sum_probs=72.0
Q ss_pred CCCCCCCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeE
Q 021721 224 GKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPL 303 (308)
Q Consensus 224 ~~~~~~~~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL 303 (308)
.+++.++...|.|||+|.+.. +.|+.||+|++||+|++||+|||+..|.||++|+|.+++|.+||.|+.|+.|
T Consensus 1072 ~KAd~~Np~higApmpG~Vv~-------v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLL 1144 (1149)
T COG1038 1072 RKADPGNPGHIGAPMPGVVVE-------VKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLL 1144 (1149)
T ss_pred cccCCCCccccCCCCCCceEE-------EEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceE
Confidence 345666777999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred EEEc
Q 021721 304 FVIE 307 (308)
Q Consensus 304 ~~Ie 307 (308)
+.++
T Consensus 1145 i~~~ 1148 (1149)
T COG1038 1145 VVVE 1148 (1149)
T ss_pred EEcc
Confidence 9875
No 27
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=99.19 E-value=4.2e-11 Score=118.72 Aligned_cols=62 Identities=34% Similarity=0.407 Sum_probs=60.4
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 239 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 239 ~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
-|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|++|+
T Consensus 16 eg~i~~-------w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~ 77 (407)
T PRK05704 16 EATIAT-------WHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRID 77 (407)
T ss_pred eEEEEE-------EEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 489999 99999999999999999999999999999999999999999999999999999986
No 28
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=99.12 E-value=1.4e-10 Score=114.96 Aligned_cols=62 Identities=27% Similarity=0.391 Sum_probs=60.3
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 239 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 239 ~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.|++++ |+|++||.|++||+||+||+||+.++|+|+++|+|.++++++|+.|..|++|++|+
T Consensus 14 eg~i~~-------w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~ 75 (403)
T TIGR01347 14 EGTVAE-------WHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILE 75 (403)
T ss_pred eEEEEE-------EEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 489999 99999999999999999999999999999999999999999999999999999986
No 29
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.07 E-value=2.3e-10 Score=118.17 Aligned_cols=63 Identities=29% Similarity=0.408 Sum_probs=60.3
Q ss_pred cCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 238 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 238 m~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|++++ |+|++||.|++||.||+||+||+.++|+|+++|+|.+|++++|+.|..|++|++|+
T Consensus 148 ~eg~i~~-------w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~ 210 (590)
T TIGR02927 148 TEGTITQ-------WLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIG 210 (590)
T ss_pred ceEEEEE-------EEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 3577888 99999999999999999999999999999999999999999999999999999985
No 30
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.07 E-value=2.2e-10 Score=119.04 Aligned_cols=63 Identities=29% Similarity=0.293 Sum_probs=59.8
Q ss_pred cCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 238 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 238 m~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.-|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.+|++++|+.|..|++|+.|+
T Consensus 217 ~eg~v~~-------w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~ 279 (633)
T PRK11854 217 DEVEVTE-------VMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFE 279 (633)
T ss_pred cceEEEE-------EEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 4567777 99999999999999999999999999999999999999999999999999999985
No 31
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.03 E-value=5e-10 Score=116.38 Aligned_cols=63 Identities=25% Similarity=0.320 Sum_probs=60.3
Q ss_pred cCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 238 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 238 m~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.-|++.+ |+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 13 ~eg~i~~-------~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~ 75 (633)
T PRK11854 13 DEVEVTE-------ILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFE 75 (633)
T ss_pred ceEEEEE-------EEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEe
Confidence 3578888 99999999999999999999999999999999999999999999999999999986
No 32
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.00 E-value=6.5e-10 Score=113.89 Aligned_cols=74 Identities=23% Similarity=0.282 Sum_probs=63.0
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|+-|..|. .. ......|+|++||.|++||.||+||+||+.++|+||++|+|.+++++.|+.|..|++|++|.
T Consensus 117 ~~~~~P~~g~-~~-eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~ 190 (546)
T TIGR01348 117 QEVTVPDIGD-IE-KVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLS 190 (546)
T ss_pred eEEeCCCCCC-cc-eeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEe
Confidence 4566666554 21 12223399999999999999999999999999999999999999999999999999999985
No 33
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=98.98 E-value=2.2e-10 Score=112.01 Aligned_cols=57 Identities=33% Similarity=0.451 Sum_probs=56.0
Q ss_pred CCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 252 PFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
|+.++||.|++++.||.||++|..++|.||.+|+|+++||++||.|+.||.|++|+|
T Consensus 92 ~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 92 WLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISP 148 (457)
T ss_pred HhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecC
Confidence 999999999999999999999999999999999999999999999999999999975
No 34
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.96 E-value=1e-09 Score=114.15 Aligned_cols=76 Identities=26% Similarity=0.339 Sum_probs=70.9
Q ss_pred CCCCCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEE
Q 021721 226 SVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFV 305 (308)
Q Consensus 226 ~~~~~~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~ 305 (308)
+.......|.|||+|++.. ..|++|++|++||+||.+.+|||++-|.||.+|+|+++.+.+|+.|+.|+.+++
T Consensus 1101 A~~~~~g~igAPMpG~vie-------ikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~ 1173 (1176)
T KOG0369|consen 1101 ADPGVKGHIGAPMPGTVIE-------IKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVE 1173 (1176)
T ss_pred CCCCCcccccCCCCCceEE-------EEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEE
Confidence 3445557899999999998 899999999999999999999999999999999999999999999999999999
Q ss_pred EcC
Q 021721 306 IEP 308 (308)
Q Consensus 306 Iep 308 (308)
|++
T Consensus 1174 ~E~ 1176 (1176)
T KOG0369|consen 1174 LEH 1176 (1176)
T ss_pred ccC
Confidence 985
No 35
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.96 E-value=1.2e-09 Score=111.66 Aligned_cols=74 Identities=34% Similarity=0.350 Sum_probs=62.6
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|+-|..|. +. ......|+|++||.|++||.||+||+||+.++|+||++|+|.++++++|+.|..|++|++|.
T Consensus 120 ~~~~~P~~g~-~~-eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~ 193 (547)
T PRK11855 120 VEVKVPDIGE-IT-EVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIE 193 (547)
T ss_pred eEEecCCCCC-cc-eeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 3555555444 21 22233399999999999999999999999999999999999999999999999999999985
No 36
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=98.95 E-value=1.8e-09 Score=107.40 Aligned_cols=61 Identities=31% Similarity=0.369 Sum_probs=59.4
Q ss_pred eEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 240 GTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 240 Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
|++.+ |+|++||.|++||+||+||+||+.+++.++.+|+|.++++++|+.|..|++|++|+
T Consensus 13 g~i~~-------w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~ 73 (416)
T PLN02528 13 CELLR-------WFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIM 73 (416)
T ss_pred EEEEE-------EEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 88998 99999999999999999999999999999999999999999999999999999985
No 37
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=98.92 E-value=6.2e-09 Score=74.19 Aligned_cols=64 Identities=34% Similarity=0.476 Sum_probs=60.7
Q ss_pred CCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021721 236 CPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 236 APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~I 306 (308)
++..|++.+ |++..|+.|..|++|+.++++|+..++.++.+|+|.+..+.+|+.|..|++|++|
T Consensus 11 ~~~~g~i~~-------~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 11 SMTEGTIVE-------WLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCcEEEEEE-------EEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 566799998 9999999999999999999999999999999999999999999999999999975
No 38
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.87 E-value=5e-09 Score=107.41 Aligned_cols=66 Identities=27% Similarity=0.335 Sum_probs=62.5
Q ss_pred cCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 235 KCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 235 ~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..+..|++.+ |+|++||.|++||+||+||+||+.++|.++++|+|.+++++.|+.|..|++|++|+
T Consensus 9 g~~~~g~i~~-------~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~ 74 (546)
T TIGR01348 9 GDNEEGEVIE-------VLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLE 74 (546)
T ss_pred CCCCceEEEE-------EEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEe
Confidence 3446799999 99999999999999999999999999999999999999999999999999999985
No 39
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=98.83 E-value=8.7e-09 Score=101.55 Aligned_cols=63 Identities=35% Similarity=0.485 Sum_probs=60.5
Q ss_pred cCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 238 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 238 m~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|++.+ |+|++||.|++||+||.||+||+.++|.||++|+|.++++++|+.|..|++|++|.
T Consensus 15 ~~g~i~~-------w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~ 77 (411)
T PRK11856 15 TEGEIVE-------WLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIE 77 (411)
T ss_pred ceEEEEE-------EEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEe
Confidence 4688998 99999999999999999999999999999999999999999999999999999985
No 40
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.83 E-value=7.9e-09 Score=105.67 Aligned_cols=62 Identities=34% Similarity=0.331 Sum_probs=59.9
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 239 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 239 ~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.|++.. |+|++||.|++||+||.||+||+.++|.|+++|+|.++++++|+.|..|++|+.|+
T Consensus 15 ~g~i~~-------~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~ 76 (547)
T PRK11855 15 EVEVIE-------WLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIE 76 (547)
T ss_pred eEEEEE-------EEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEec
Confidence 588888 99999999999999999999999999999999999999999999999999999886
No 41
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=98.81 E-value=7.5e-09 Score=106.20 Aligned_cols=61 Identities=30% Similarity=0.467 Sum_probs=58.4
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCC-ccCCCCeEEEE
Q 021721 239 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK-PVSVDTPLFVI 306 (308)
Q Consensus 239 ~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd-~V~~GqpL~~I 306 (308)
-|++.+ |++++||.|++||+||.||++|..++|+++.+|+|.+|++++|+ .|..|++|++|
T Consensus 126 eg~I~~-------W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i 187 (539)
T PLN02744 126 EGNIAR-------WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAIT 187 (539)
T ss_pred eeEEEE-------EEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEE
Confidence 478888 99999999999999999999999999999999999999999996 79999999987
No 42
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=98.81 E-value=9.1e-09 Score=102.96 Aligned_cols=63 Identities=30% Similarity=0.457 Sum_probs=60.2
Q ss_pred cCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCc-cCCCCeEEEEc
Q 021721 238 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKP-VSVDTPLFVIE 307 (308)
Q Consensus 238 m~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~-V~~GqpL~~Ie 307 (308)
..|++.+ |+|++||.|++||+||.||+||+.++|.|+.+|+|.++++++|+. |..|++|++|+
T Consensus 12 ~eg~i~~-------w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~ 75 (435)
T TIGR01349 12 TTGNLAK-------WLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLV 75 (435)
T ss_pred ceEEEEE-------EEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEe
Confidence 3578888 999999999999999999999999999999999999999999999 99999999984
No 43
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=98.76 E-value=9.5e-09 Score=103.02 Aligned_cols=67 Identities=31% Similarity=0.446 Sum_probs=61.7
Q ss_pred ccCCc-CeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCC-CccCCCCeEEEEc
Q 021721 234 LKCPM-AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDR-KPVSVDTPLFVIE 307 (308)
Q Consensus 234 V~APm-~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~G-d~V~~GqpL~~Ie 307 (308)
+...| -|.+.+ |..++||++.+||+||+||++|..+++++..+|.+.+|++++| ..|..|.+|+.|.
T Consensus 46 LSPTMeeGnIvs-------W~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv 114 (470)
T KOG0557|consen 46 LSPTMEEGNIVS-------WKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV 114 (470)
T ss_pred CCccccCCceee-------EeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence 44445 388998 9999999999999999999999999999999999999999999 8999999999874
No 44
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=98.72 E-value=2.3e-08 Score=101.01 Aligned_cols=62 Identities=35% Similarity=0.497 Sum_probs=59.0
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCC-ccCCCCeEEEEc
Q 021721 239 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK-PVSVDTPLFVIE 307 (308)
Q Consensus 239 ~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd-~V~~GqpL~~Ie 307 (308)
-|++.+ |+|++||.|++||+|+.||++|+.++|.|+.+|+|.+++++.|+ .|..|++|++|+
T Consensus 16 eg~i~~-------w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~ 78 (464)
T PRK11892 16 EGTLAK-------WLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLL 78 (464)
T ss_pred eeEEEE-------EEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEc
Confidence 378888 99999999999999999999999999999999999999999995 799999999985
No 45
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.71 E-value=1e-08 Score=104.24 Aligned_cols=69 Identities=29% Similarity=0.466 Sum_probs=66.4
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..+.+||+|.+.+ .+|+.||.|++||.|+.+++|||.+-++||.+|+|+.+.++.|+.|..|.+|++++
T Consensus 602 ~v~~aPMpG~Iek-------v~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 602 GVIVAPMPGIIEK-------VLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred CceecCCCCeeee-------eeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 4689999999998 99999999999999999999999999999999999999999999999999999874
No 46
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=98.68 E-value=3.1e-08 Score=102.52 Aligned_cols=63 Identities=27% Similarity=0.354 Sum_probs=59.9
Q ss_pred cCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 238 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 238 m~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|++++ |+|++||.|+.||+||.||+||+.++|.|+.+|+|.++++++|+.|..|+.|++|+
T Consensus 15 ~eg~i~~-------w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~ 77 (590)
T TIGR02927 15 TEGTITQ-------WLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIG 77 (590)
T ss_pred cEEEEEE-------EEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEe
Confidence 3578888 99999999999999999999999999999999999999999999999999999874
No 47
>PRK01202 glycine cleavage system protein H; Provisional
Probab=98.45 E-value=4.2e-07 Score=77.19 Aligned_cols=56 Identities=32% Similarity=0.560 Sum_probs=50.3
Q ss_pred CccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEE---ecCCCCccC---CCC-eEEEEcC
Q 021721 253 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEI---IAEDRKPVS---VDT-PLFVIEP 308 (308)
Q Consensus 253 ~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~ei---lVe~Gd~V~---~Gq-pL~~Iep 308 (308)
+.++|++|++||++|.||++|...+|.||++|+|+++ +.++.+.|. ||+ .|++|++
T Consensus 44 lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~ 106 (127)
T PRK01202 44 LPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKP 106 (127)
T ss_pred cCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEe
Confidence 4478999999999999999999999999999999999 677778887 886 9999864
No 48
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=98.38 E-value=9e-07 Score=87.50 Aligned_cols=70 Identities=21% Similarity=0.261 Sum_probs=61.6
Q ss_pred CCCccCCcCeEEEcCCCCCCCCC-ccCCCEEecCCEEEEEEec-------------------------------------
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPF-VKVGDRVQKGQVLCIIEAM------------------------------------- 272 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~-VkvGD~VkkGqvL~iIEam------------------------------------- 272 (308)
...|.+++.|.+.+ .+ +++||.|++||+|+.|+.-
T Consensus 123 ~~~v~arv~G~V~~-------l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~ 195 (409)
T PRK09783 123 YAIVQARAAGFIDK-------VYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEA 195 (409)
T ss_pred eEEEeCCcCEEEEE-------EEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHH
Confidence 34799999999998 77 8999999999999999821
Q ss_pred -----------ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 273 -----------KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 273 -----------K~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.....|+||++|+|.++.++.|+.|..|++|++|.
T Consensus 196 ~i~~l~~~~~~~~~~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~ 241 (409)
T PRK09783 196 DIRRLIATRKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQ 241 (409)
T ss_pred HHHHHHHcCCCCCcEEEECCCCeEEEEEECCCCCEECCCCeEEEEE
Confidence 12357999999999999999999999999999984
No 49
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=98.37 E-value=5.6e-07 Score=84.83 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=30.5
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 276 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
..|+||++|+|.++.++.|+.|..|++|+.|.+
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~ 237 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVP 237 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEc
Confidence 468999999999999999999999999999853
No 50
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.36 E-value=6.8e-07 Score=71.81 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=48.5
Q ss_pred cCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCc
Q 021721 235 KCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKP 296 (308)
Q Consensus 235 ~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~ 296 (308)
...+.|.+... ++.++|+.|++||.||.||++|+..+|.||.+|+|.+++.+.++.
T Consensus 24 ~~~~lG~i~~i------~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~ 79 (96)
T cd06848 24 AQDLLGDIVFV------ELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN 79 (96)
T ss_pred HHhhCCCEEEE------EecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence 34567887764 678889999999999999999999999999999999998777654
No 51
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=98.27 E-value=1.3e-06 Score=83.65 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=30.3
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 275 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 275 ~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
...|+||++|+|.++.++.|+.|..|++|+.|.
T Consensus 208 ~~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~ 240 (346)
T PRK10476 208 DTTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLI 240 (346)
T ss_pred cCEEECCCCcEEEeeecCCCCCcCCCCeEEEEe
Confidence 346889999999999999999999999999985
No 52
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=98.26 E-value=1.1e-06 Score=97.41 Aligned_cols=71 Identities=24% Similarity=0.416 Sum_probs=66.6
Q ss_pred CCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 229 SSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 229 ~~~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.+...+++|.+|++.+ ++|+.|+.|.+||+-++||.|||.+++.|..+|+|. .+.++|+.+++|+.|+++.
T Consensus 683 nDpt~LrsPs~GKLl~-------ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~-~i~~~G~~i~aG~vlakL~ 753 (2196)
T KOG0368|consen 683 NDPTVLRSPSPGKLLQ-------YLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQ-LIKQEGDAIEAGSVLAKLT 753 (2196)
T ss_pred CCcceecCCCCccceE-------EEecCCCceecCCeeeehehhheeeeeeccCCceEE-EecCCCCccCccceeEEee
Confidence 4556899999999999 999999999999999999999999999999999987 7889999999999999875
No 53
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=98.20 E-value=1.7e-06 Score=80.04 Aligned_cols=69 Identities=30% Similarity=0.356 Sum_probs=61.0
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecce-------------------------------------
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL------------------------------------- 274 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~------------------------------------- 274 (308)
..|.+|..|++.. ++|++||.|++||+|+.|+...+
T Consensus 27 ~~v~a~~~G~V~~-------i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~ 99 (322)
T TIGR01730 27 ADLAAEVAGKITK-------ISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAV 99 (322)
T ss_pred EEEEccccEEEEE-------EEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 4799999999998 89999999999999999964211
Q ss_pred ----------------------------------eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 275 ----------------------------------MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 275 ----------------------------------~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
...|+||++|+|..+.+..|+.|..|++|+.|.
T Consensus 100 s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~ 166 (322)
T TIGR01730 100 SQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIV 166 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEE
Confidence 236999999999999999999999999999874
No 54
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=98.14 E-value=4.1e-06 Score=79.97 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=61.2
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecc-------------------------------------
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK------------------------------------- 273 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK------------------------------------- 273 (308)
...|.++..|++.+ ++|++||.|++||+|+.|+...
T Consensus 47 ~v~i~~~v~G~V~~-------v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~ai 119 (310)
T PRK10559 47 VVAIAPDVSGLITQ-------VNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAM 119 (310)
T ss_pred EEEEccCCceEEEE-------EEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 35799999999999 8999999999999999997511
Q ss_pred ---------------------------------eeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 274 ---------------------------------LMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 274 ---------------------------------~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
-...|+||++|+|.++.++.|+.|..|++|+.|-
T Consensus 120 S~~~~d~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv 186 (310)
T PRK10559 120 SREEIDQANNVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALV 186 (310)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEE
Confidence 0246889999999999999999999999999863
No 55
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=98.07 E-value=5.3e-06 Score=69.27 Aligned_cols=55 Identities=25% Similarity=0.424 Sum_probs=43.8
Q ss_pred CccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCC---Ccc---CCCC-eEEEEc
Q 021721 253 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDR---KPV---SVDT-PLFVIE 307 (308)
Q Consensus 253 ~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~G---d~V---~~Gq-pL~~Ie 307 (308)
+-++|+.|++||.|+.||++|+..+|.||++|+|.+++.+.. +.+ .||+ -|++|+
T Consensus 37 lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~~P~lln~~py~~gWl~~v~ 98 (110)
T TIGR03077 37 LPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALEDDTQPINHSPESEGWFVVVQ 98 (110)
T ss_pred CCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEE
Confidence 458899999999999999999999999999999999954433 333 3444 566654
No 56
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=98.07 E-value=4e-06 Score=82.35 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=30.1
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|+||++|+|..+.++.|+.|..|++|+.|-
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv 247 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVV 247 (390)
T ss_pred CEEECCCCeEEEEEecCCCCEeCCCCeEEEEE
Confidence 47999999999999999999999999999884
No 57
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=98.07 E-value=5.5e-06 Score=80.59 Aligned_cols=70 Identities=24% Similarity=0.346 Sum_probs=60.0
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecce------------------------------------
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL------------------------------------ 274 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~------------------------------------ 274 (308)
...|.+++.|++.+ ++|++||.|++||+|+.|+...+
T Consensus 63 ~~~l~~~v~G~V~~-------v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~ 135 (385)
T PRK09578 63 QAEVRARVAGIVTA-------RTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRA 135 (385)
T ss_pred EEEEeccCcEEEEE-------EECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34799999999998 89999999999999999975211
Q ss_pred -----------------------------------eeEEecCCCeEEEEEecCCCCccCCC--CeEEEEc
Q 021721 275 -----------------------------------MNEIEADRSGTIVEIIAEDRKPVSVD--TPLFVIE 307 (308)
Q Consensus 275 -----------------------------------~~eI~Ap~sGvV~eilVe~Gd~V~~G--qpL~~Ie 307 (308)
...|+||++|+|.+.+++.|+.|..| ++|+.|.
T Consensus 136 iS~~~~~~~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~ 205 (385)
T PRK09578 136 VSERDYTEAVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVE 205 (385)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEE
Confidence 24788999999999999999999885 5898874
No 58
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=98.06 E-value=6.3e-06 Score=78.40 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=30.0
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|+||++|+|..+.+..|+.|..|++|+.|.
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~ 235 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLS 235 (331)
T ss_pred CEEECCCCeEEEeccCCCCCCcCCCCeEEEEe
Confidence 47999999999999999999999999999884
No 59
>PRK00624 glycine cleavage system protein H; Provisional
Probab=98.03 E-value=1.3e-05 Score=67.42 Aligned_cols=55 Identities=27% Similarity=0.497 Sum_probs=43.6
Q ss_pred CccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEE---ecCCCCcc---CCCC-eEEEEc
Q 021721 253 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEI---IAEDRKPV---SVDT-PLFVIE 307 (308)
Q Consensus 253 ~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~ei---lVe~Gd~V---~~Gq-pL~~Ie 307 (308)
+-++|+.|++||.||.||++|...+|.||++|+|.++ +.++-+.+ .||+ -|++|+
T Consensus 39 lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~ 100 (114)
T PRK00624 39 LPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTALEDDIQPINNAPESEGWFVVVQ 100 (114)
T ss_pred CCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEE
Confidence 4588999999999999999999999999999999999 44444443 3444 555554
No 60
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=98.02 E-value=2.3e-06 Score=84.01 Aligned_cols=57 Identities=28% Similarity=0.370 Sum_probs=55.2
Q ss_pred CCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 251 PPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 251 ~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
+||||+||.|.+=|.||+++.+|..++|.+-++|+|++|.-+.+|....|++|..++
T Consensus 83 eWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~e 139 (474)
T KOG0558|consen 83 EWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLE 139 (474)
T ss_pred eehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeee
Confidence 499999999999999999999999999999999999999999999999999999875
No 61
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.99 E-value=5e-06 Score=72.30 Aligned_cols=57 Identities=23% Similarity=0.322 Sum_probs=48.4
Q ss_pred CCccCCcCeEEEcCCCCCCCCCc-cCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCC
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFV-KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK 295 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~V-kvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd 295 (308)
..+...+.|.+.. +.+ ++|++|++||.++.||+||+..+|.||++|+|++++.+..+
T Consensus 36 td~aq~~lG~I~~-------v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~ 93 (144)
T PRK13380 36 TDYAQTMAGDVVF-------VRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALED 93 (144)
T ss_pred CHHHHHhcCCEEE-------EEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhh
Confidence 4566778888876 344 58999999999999999999999999999999999876544
No 62
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=97.96 E-value=1.2e-05 Score=78.97 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=59.2
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecc-------------------------------------
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK------------------------------------- 273 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK------------------------------------- 273 (308)
...|.+.+.|++.+ .+|++||.|++||+|+.|+...
T Consensus 65 ~~~l~a~vsG~V~~-------v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~ 137 (397)
T PRK15030 65 IAEVRPQVSGIILK-------RNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQY 137 (397)
T ss_pred EEEEEecCcEEEEE-------EEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 35799999999998 8999999999999999997421
Q ss_pred ----------------------------------eeeEEecCCCeEEEEEecCCCCccCCCCe--EEEE
Q 021721 274 ----------------------------------LMNEIEADRSGTIVEIIAEDRKPVSVDTP--LFVI 306 (308)
Q Consensus 274 ----------------------------------~~~eI~Ap~sGvV~eilVe~Gd~V~~Gqp--L~~I 306 (308)
-...|+||++|+|.++.++.|+.|..|++ |+.|
T Consensus 138 is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i 206 (397)
T PRK15030 138 ISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATV 206 (397)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEE
Confidence 12458899999999999999999999985 7766
No 63
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.95 E-value=1.1e-05 Score=68.74 Aligned_cols=41 Identities=32% Similarity=0.409 Sum_probs=37.2
Q ss_pred cCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCC
Q 021721 255 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK 295 (308)
Q Consensus 255 kvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd 295 (308)
++|++|++||++|.||+||+..+|.||++|+|+++.-+.-+
T Consensus 45 ~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~ 85 (127)
T TIGR00527 45 EVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALED 85 (127)
T ss_pred CCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhh
Confidence 68999999999999999999999999999999998754443
No 64
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=97.95 E-value=3.2e-05 Score=73.23 Aligned_cols=65 Identities=20% Similarity=0.291 Sum_probs=59.0
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
...|+||..|.|.. .++.||.|++||+|+.|.. .+|+||.+|+|. =++.+|-.|..|.-|..|.|
T Consensus 164 Er~IrAp~~Gi~~~--------~~~IGd~V~KGqvLa~I~~----~~V~APidGIVr-GlirdG~~V~~G~Ki~dIDP 228 (256)
T TIGR03309 164 ERVLRAPADGIVTP--------TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLR-GLIHEGLTVTEGLKIGDVDP 228 (256)
T ss_pred eEEEECCCCeEEee--------ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEE-EEecCCCCcCCCCEEEEECC
Confidence 35799999999984 8999999999999999975 799999999887 67889999999999999976
No 65
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=97.94 E-value=1.1e-05 Score=78.51 Aligned_cols=68 Identities=15% Similarity=0.233 Sum_probs=59.2
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecc--------------------------------------
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK-------------------------------------- 273 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK-------------------------------------- 273 (308)
..|.+++.|++.+ .++++||.|++||+|+.|+...
T Consensus 62 ~~l~~~v~G~V~~-------i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~i 134 (385)
T PRK09859 62 AEIRPQVGGIIIK-------RNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYV 134 (385)
T ss_pred EEEeccCcEEEEE-------EEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 4799999999998 8999999999999999997420
Q ss_pred ---------------------------------eeeEEecCCCeEEEEEecCCCCccCCCC--eEEEE
Q 021721 274 ---------------------------------LMNEIEADRSGTIVEIIAEDRKPVSVDT--PLFVI 306 (308)
Q Consensus 274 ---------------------------------~~~eI~Ap~sGvV~eilVe~Gd~V~~Gq--pL~~I 306 (308)
-...|+||++|+|.+..++.|+.|..|+ +|+.|
T Consensus 135 s~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i 202 (385)
T PRK09859 135 SRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTV 202 (385)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEE
Confidence 1247999999999999999999999985 68876
No 66
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.81 E-value=2.7e-05 Score=75.30 Aligned_cols=69 Identities=20% Similarity=0.324 Sum_probs=58.9
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecc-------------------------------------
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK------------------------------------- 273 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK------------------------------------- 273 (308)
...|.+++.|.+.. ++|++||.|++||+|+.|+...
T Consensus 61 ~~~l~a~~~G~V~~-------v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~ 133 (370)
T PRK11578 61 KVDVGAQVSGQLKT-------LSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQ 133 (370)
T ss_pred EEEEecccceEEEE-------EEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999998 8999999999999999998621
Q ss_pred ------------------------------------------------eeeEEecCCCeEEEEEecCCCCccCCC---Ce
Q 021721 274 ------------------------------------------------LMNEIEADRSGTIVEIIAEDRKPVSVD---TP 302 (308)
Q Consensus 274 ------------------------------------------------~~~eI~Ap~sGvV~eilVe~Gd~V~~G---qp 302 (308)
-...|+||++|+|.++.++.|+.|..| ++
T Consensus 134 ~L~~~g~is~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~V~~~~~~~~ 213 (370)
T PRK11578 134 RLAKTQAVSQQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPN 213 (370)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcEeecccCCce
Confidence 013799999999999999999999776 47
Q ss_pred EEEE
Q 021721 303 LFVI 306 (308)
Q Consensus 303 L~~I 306 (308)
|+.|
T Consensus 214 l~~i 217 (370)
T PRK11578 214 ILTL 217 (370)
T ss_pred EEEE
Confidence 8876
No 67
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.76 E-value=3.2e-05 Score=76.69 Aligned_cols=70 Identities=19% Similarity=0.248 Sum_probs=59.7
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecc------------------------------------
Q 021721 230 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK------------------------------------ 273 (308)
Q Consensus 230 ~~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK------------------------------------ 273 (308)
+...|.+++.|++.. +++++||.|++||+|+.|+...
T Consensus 86 ~~v~v~~~vsG~V~~-------i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g 158 (415)
T PRK11556 86 NTVTVRSRVDGQLMA-------LHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTN 158 (415)
T ss_pred eEEEEEccccEEEEE-------EECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 446799999999998 8999999999999999996421
Q ss_pred -----------------------------------eeeEEecCCCeEEEEEecCCCCccCCCC--eEEEE
Q 021721 274 -----------------------------------LMNEIEADRSGTIVEIIAEDRKPVSVDT--PLFVI 306 (308)
Q Consensus 274 -----------------------------------~~~eI~Ap~sGvV~eilVe~Gd~V~~Gq--pL~~I 306 (308)
-...|+||++|+|..+.++.|+.|..|+ +|+.|
T Consensus 159 ~is~~~ld~~~~~~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i 228 (415)
T PRK11556 159 LVSRQELDAQQALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVI 228 (415)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEE
Confidence 1347999999999999999999999984 67765
No 68
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.67 E-value=8.2e-05 Score=53.42 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=30.4
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|.++++|+|.++++++|+.|..|++|++|.
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld 34 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLD 34 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEEC
Confidence 57899999999999999999999999999986
No 69
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=97.65 E-value=2.4e-05 Score=72.56 Aligned_cols=33 Identities=36% Similarity=0.584 Sum_probs=23.7
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEe
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEa 271 (308)
...|.++..|++ + ++|++||+|++||+|+.|+.
T Consensus 21 ~~~v~~~~~G~v-~-------~~v~~G~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 21 EVSVSAPVSGRV-S-------VNVKEGDKVKKGQVLAELDS 53 (328)
T ss_dssp EEEE--SS-EEE-E-------E-S-TTSEEETT-EEEEEE-
T ss_pred EEEEECCCCEEE-E-------EEeCCcCEECCCCEEEEEEC
Confidence 357899999999 8 99999999999999999974
No 70
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=97.63 E-value=0.00011 Score=69.56 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=31.4
Q ss_pred CCCccCCcC---eEEEcCCCCCCCCCccCCCEEecCCEEEEEEec
Q 021721 231 LPPLKCPMA---GTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 272 (308)
Q Consensus 231 ~~~V~APm~---Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEam 272 (308)
...|.++.. |++.+ ++|++||.|++||+|+.|+..
T Consensus 13 ~~~v~~~~~~~~G~V~~-------i~V~eG~~V~~G~~L~~ld~~ 50 (327)
T TIGR02971 13 VVAVAAPSSGGTDRIKK-------LLVAEGDRVQAGQVLAELDSR 50 (327)
T ss_pred eEEecCCCCCCCcEEEE-------EEccCCCEecCCcEEEEecCc
Confidence 347899999 99999 999999999999999999863
No 71
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.55 E-value=5.7e-05 Score=54.23 Aligned_cols=37 Identities=30% Similarity=0.598 Sum_probs=32.9
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEeccee
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLM 275 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~ 275 (308)
..|.+|+.|++.. ++|++||.|++||+|+.|+...+.
T Consensus 3 ~~I~~~~~G~V~~-------v~V~~G~~VkkGd~L~~ld~~~~~ 39 (50)
T PF13533_consen 3 VTIQAPVSGRVES-------VYVKEGQQVKKGDVLLVLDSPDLQ 39 (50)
T ss_pred EEEeCCCCEEEEE-------EEecCCCEEcCCCEEEEECcHHHH
Confidence 3689999999999 999999999999999999876543
No 72
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.51 E-value=0.00034 Score=66.91 Aligned_cols=66 Identities=21% Similarity=0.303 Sum_probs=56.6
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEe---cceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA---MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEa---mK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~I 306 (308)
...|+||..|.|+ +.++.||.|++||+|++|-. +....+|.||.+|+|.-+. ..-.|..|+.|++|
T Consensus 229 ~~~v~A~~~Gl~~--------~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p~v~~G~~l~~i 297 (298)
T cd06253 229 VVYVNAETSGIFV--------PAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYPLVYEGSLVARI 297 (298)
T ss_pred eEEEEcCCCeEEE--------ECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCCeecCCceEEEe
Confidence 4589999999998 47999999999999999955 3457789999999997544 66789999999987
No 73
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.42 E-value=0.00047 Score=66.24 Aligned_cols=66 Identities=29% Similarity=0.287 Sum_probs=55.3
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEec----ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM----KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEam----K~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|+||..|.|+ +.++.||.|++||+|++|-.. ....+|+||.+|+|.-+. ..-.|..|+.|+.|.
T Consensus 245 ~~v~A~~~G~~~--------~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~--~~~~v~~G~~l~~i~ 314 (316)
T cd06252 245 CYVFAPHPGLFE--------PLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARR--PPGLVRRGDCLAVLA 314 (316)
T ss_pred EEEEcCCCeEEE--------EecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEee--CCCccCCCCEEEEEe
Confidence 579999999998 589999999999999999653 456789999999997443 446699999999874
No 74
>PRK12784 hypothetical protein; Provisional
Probab=97.40 E-value=0.00051 Score=54.68 Aligned_cols=68 Identities=19% Similarity=0.152 Sum_probs=62.8
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceee-EEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 233 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMN-EIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 233 ~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~-eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.|.+|.-|++.+ .||.+++.|-+-+.|+.|++|.-.. .|.-.++|-|.-+.++.||.|..|+.|++++
T Consensus 7 ~iyS~~~G~Vek-------ifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~e 75 (84)
T PRK12784 7 EICSSYEGKVEE-------IFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLE 75 (84)
T ss_pred hhcCccccEEEE-------EEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEe
Confidence 689999999999 9999999999999999999977544 5777999999999999999999999999986
No 75
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.38 E-value=0.00038 Score=67.00 Aligned_cols=34 Identities=32% Similarity=0.474 Sum_probs=30.3
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEe
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEa 271 (308)
...|.++..|++.. ++|++||.|++||+|+.++.
T Consensus 43 ~~~v~~~~~G~v~~-------i~V~eG~~V~kG~~L~~ld~ 76 (423)
T TIGR01843 43 VKVVQHLEGGIVRE-------ILVREGDRVKAGQVLVELDA 76 (423)
T ss_pred eeecccCCCcEEEE-------EEeCCCCEecCCCeEEEEcc
Confidence 34689999999998 99999999999999998853
No 76
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.32 E-value=0.00082 Score=63.67 Aligned_cols=65 Identities=29% Similarity=0.435 Sum_probs=54.0
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEe--cceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA--MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEa--mK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~I 306 (308)
..|+||..|.|+ +.++.||.|++||+|+.|.. .....+|+||.+|+|..+ ...-.|..|+.|+.|
T Consensus 220 ~~v~A~~~G~~~--------~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~--~~~~~v~~G~~l~~i 286 (287)
T cd06251 220 VWVRAPQGGLLR--------SLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGR--NNLPLVNEGDALFHI 286 (287)
T ss_pred eEEecCCCeEEE--------EecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEe--cCCCccCCCCEEEEe
Confidence 479999999988 47999999999999999954 123478999999999644 466688999999987
No 77
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=97.24 E-value=0.001 Score=64.60 Aligned_cols=65 Identities=18% Similarity=0.140 Sum_probs=55.4
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEe----cceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA----MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEa----mK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~I 306 (308)
..|+||..|.|+ +.++.||.|++||+|+.|-. +....+|+||.+|+|..+. ..-.|..|+.|+.|
T Consensus 256 ~~v~Ap~~Gi~~--------~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 256 CFIFAEDDGLIE--------FMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPGLIKSGDCIAVL 324 (325)
T ss_pred eEEEcCCCeEEE--------EecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCCccCCCCEEEEe
Confidence 479999999998 58999999999999999954 3356789999999997644 66789999999876
No 78
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=97.21 E-value=0.00099 Score=65.48 Aligned_cols=66 Identities=27% Similarity=0.243 Sum_probs=54.1
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEe----cceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA----MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEa----mK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~I 306 (308)
...|+||..|.|+ +.++.||.|++||+|+.|-. .....+|.||.+|+|.- ....-.|..|+.|+.|
T Consensus 289 ~~~v~Ap~~Gl~~--------~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~--~~~~~~V~~G~~l~~I 358 (359)
T cd06250 289 VEMLYAPAGGMVV--------YRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFA--RASRRFVRAGDELAKI 358 (359)
T ss_pred cEEEeCCCCeEEE--------EecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEE--ecCCccccCCCeEEEe
Confidence 4579999999998 58999999999999999943 22333469999999965 4477789999999987
No 79
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=97.17 E-value=0.00082 Score=56.69 Aligned_cols=39 Identities=33% Similarity=0.545 Sum_probs=32.5
Q ss_pred CccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEec
Q 021721 253 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIA 291 (308)
Q Consensus 253 ~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilV 291 (308)
+.++|++|++|+.++.||+.|...++.+|++|+|.++.-
T Consensus 38 lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~ 76 (122)
T PF01597_consen 38 LPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNE 76 (122)
T ss_dssp -B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-G
T ss_pred EccCCCEEecCCcEEEEEECceeeecccceEEEEEEEcc
Confidence 468899999999999999999999999999999999864
No 80
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=97.10 E-value=0.00069 Score=51.38 Aligned_cols=33 Identities=12% Similarity=0.426 Sum_probs=30.5
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 275 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 275 ~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.-.|+||++|+|.++++++||.|+.||+|+.|+
T Consensus 2 ~~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve 34 (71)
T PRK05889 2 AEDVRAEIVASVLEVVVNEGDQIGKGDTLVLLE 34 (71)
T ss_pred CcEEeCCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 345999999999999999999999999999886
No 81
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=96.99 E-value=0.00091 Score=57.80 Aligned_cols=55 Identities=22% Similarity=0.376 Sum_probs=44.0
Q ss_pred CccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCc---c---CCCC-eEEEEc
Q 021721 253 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKP---V---SVDT-PLFVIE 307 (308)
Q Consensus 253 ~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~---V---~~Gq-pL~~Ie 307 (308)
+-++|+.|++|+.++.||+-|...+|.||.+|+|++++-+.-+. | .||+ -|++|+
T Consensus 46 lpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~l~~~PeliN~dPyg~gWi~klk 107 (131)
T COG0509 46 LPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEALVDSPELINSDPYGEGWIVKLK 107 (131)
T ss_pred cCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechhhhcChhhhccCCCCCceEEEEe
Confidence 56999999999999999999999999999999999986443322 2 3553 566654
No 82
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.97 E-value=0.0019 Score=61.21 Aligned_cols=65 Identities=32% Similarity=0.522 Sum_probs=51.7
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEe--cceeeEEecCCCeEEEEEecCCCCccCCCCeEE
Q 021721 230 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA--MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLF 304 (308)
Q Consensus 230 ~~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEa--mK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~ 304 (308)
....++||..|.|+ ++++.||.|++||+|+.|-. .....+|+||.+|+|.-+. ..-.|..|+.|+
T Consensus 222 ~~~~v~Ap~~G~~~--------~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~--~~~~v~~G~~l~ 288 (288)
T cd06254 222 DVYYVTSPASGLWY--------PFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT--ATLPVRKGDPLA 288 (288)
T ss_pred CCEEEecCCCeEEE--------EecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee--CCCccCCCCccC
Confidence 34579999999998 58999999999999999943 3456789999999997654 345677777663
No 83
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=96.89 E-value=0.00097 Score=54.88 Aligned_cols=38 Identities=47% Similarity=0.652 Sum_probs=34.5
Q ss_pred CCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII 290 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eil 290 (308)
+.|++||+|++||.|+..+. -+...|.|+++|+|..|.
T Consensus 44 p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~ 81 (101)
T PF13375_consen 44 PVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIE 81 (101)
T ss_pred EEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEe
Confidence 78999999999999999975 567899999999999875
No 84
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=96.71 E-value=0.0024 Score=48.02 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=30.8
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 275 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 275 ~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
|..|.||..|+|.+++++.|+.|+.|++|+.|+
T Consensus 1 ~~~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve 33 (70)
T PRK08225 1 MTKVYASMAGNVWKIVVKVGDTVEEGQDVVILE 33 (70)
T ss_pred CCeEeCCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 457999999999999999999999999999986
No 85
>PRK06748 hypothetical protein; Validated
Probab=96.65 E-value=0.0034 Score=50.23 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=30.7
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 275 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 275 ~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.--|+||..|+|.++++++||.|..||+|+.|+
T Consensus 4 ~~~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IE 36 (83)
T PRK06748 4 IEGVYSPCYGKVEKLFVRESSYVYEWEKLALIE 36 (83)
T ss_pred eeEEecCCcEEEEEEEeCCCCEECCCCEEEEEE
Confidence 445899999999999999999999999999987
No 86
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=96.46 E-value=0.0035 Score=45.08 Aligned_cols=31 Identities=32% Similarity=0.597 Sum_probs=29.0
Q ss_pred EEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 277 EIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 277 eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.|+||++|+|.+++++.|+.|+.|++|+.|+
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~ 31 (67)
T cd06850 1 EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLE 31 (67)
T ss_pred CccCCccEEEEEEEeCCCCEECCCCEEEEEE
Confidence 3789999999999999999999999999986
No 87
>COG3608 Predicted deacylase [General function prediction only]
Probab=96.45 E-value=0.0071 Score=59.40 Aligned_cols=65 Identities=29% Similarity=0.363 Sum_probs=51.4
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEec---ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM---KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEam---K~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~I 306 (308)
..|.||..|.|. ..|+.||.|++||+|+.|-.+ +...||+|+.+|+|..+. .--.|+.|+.|+.+
T Consensus 257 ~~i~Ap~~G~v~--------~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r--~~~~v~~Gdl~~~v 324 (331)
T COG3608 257 EMIRAPAGGLVE--------FLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARR--SLRLVQPGDLLKVV 324 (331)
T ss_pred ceeecCCCceEE--------EeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEe--eccccCCCCeeeee
Confidence 469999999887 589999999999999999765 788999999999998654 22345555555443
No 88
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.97 E-value=0.019 Score=54.82 Aligned_cols=51 Identities=25% Similarity=0.293 Sum_probs=42.8
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEe--cceeeEEecCCCeEEEEE
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA--MKLMNEIEADRSGTIVEI 289 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEa--mK~~~eI~Ap~sGvV~ei 289 (308)
...|+||..|.|+ +.++.||.|++||+|+.|-. .....++.||.+|+|.-+
T Consensus 231 ~~~v~Ap~~Gi~~--------~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 231 RDWVAAIHGGLFE--------PSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred eEEEecCCCeEEE--------EecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 4579999999998 57999999999999999954 223567899999999865
No 89
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=95.84 E-value=0.01 Score=51.13 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=31.6
Q ss_pred eeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 274 LMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 274 ~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
-...|+||..|++.+++|+.||.|..||.|+.||
T Consensus 69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiE 102 (140)
T COG0511 69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIE 102 (140)
T ss_pred cCceEecCcceEEEEEeeccCCEEcCCCEEEEEE
Confidence 3467999999999999999999999999999986
No 90
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=95.83 E-value=0.0047 Score=61.03 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=29.6
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 276 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
..|+||++|+|.+..+..|+.|..|++|+.+-|
T Consensus 209 T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp 241 (352)
T COG1566 209 TVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVP 241 (352)
T ss_pred CEEECCCCceEEeecccCCCeecCCCceEEEec
Confidence 347799999999999999999999999998743
No 91
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=95.76 E-value=0.017 Score=55.58 Aligned_cols=50 Identities=22% Similarity=0.403 Sum_probs=39.6
Q ss_pred cCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 255 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 255 kvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
..+..+-..+ +.|++. ...|.++.+|+|.++++++||.|..||+|++|.+
T Consensus 32 ~~~~~~~t~~--~~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~ 81 (346)
T PRK10476 32 RTDSAPSTDD--AYIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDP 81 (346)
T ss_pred ccCceEecCC--eEEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 3344433333 566764 5789999999999999999999999999999974
No 92
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.56 E-value=0.018 Score=49.57 Aligned_cols=33 Identities=21% Similarity=0.500 Sum_probs=30.6
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 275 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 275 ~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
...|.||.+|+|.++++++||.|+.||+|+.|+
T Consensus 61 ~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lE 93 (130)
T PRK06549 61 ADAMPSPMPGTILKVLVAVGDQVTENQPLLILE 93 (130)
T ss_pred CcEEECCCCEEEEEEEeCCCCEECCCCEEEEEe
Confidence 346899999999999999999999999999986
No 93
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=95.54 E-value=0.037 Score=51.60 Aligned_cols=67 Identities=28% Similarity=0.371 Sum_probs=54.7
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEE--EEEEe--cceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVL--CIIEA--MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL--~iIEa--mK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~I 306 (308)
...+.||..|.++ +.++.||.|++||+| +.+-. +....+|+||.+|+|. .....-.|..|+.|+.|
T Consensus 220 ~~~~~a~~~G~~~--------~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii--~~~~~~~v~~G~~l~~v 289 (292)
T PF04952_consen 220 PEWVRAPAGGLFE--------PEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIII--FIRESPYVEQGDALAKV 289 (292)
T ss_dssp CCEEESSSSEEEE--------ETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEE--SECTSSECTTTEEEEEE
T ss_pred ceeecCCccEEEE--------EeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEE--EeCcccccCCCCeEEEE
Confidence 3578999999998 589999999999999 65543 2344689999999995 55588899999999987
Q ss_pred c
Q 021721 307 E 307 (308)
Q Consensus 307 e 307 (308)
.
T Consensus 290 ~ 290 (292)
T PF04952_consen 290 A 290 (292)
T ss_dssp E
T ss_pred e
Confidence 3
No 94
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=95.50 E-value=0.016 Score=44.31 Aligned_cols=32 Identities=34% Similarity=0.472 Sum_probs=27.7
Q ss_pred eEEecCCCeEEEE------EecCCCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVE------IIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~e------ilVe~Gd~V~~GqpL~~Ie 307 (308)
.+|++|.-|...+ +++++|+.|..||+|+.|+
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~ie 38 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIE 38 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEE
Confidence 3678888877555 9999999999999999986
No 95
>PRK07051 hypothetical protein; Validated
Probab=95.43 E-value=0.015 Score=45.21 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=29.8
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEE
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIE 270 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIE 270 (308)
..|++|..|++.+ +++++||.|+.||+|+.|+
T Consensus 48 ~~i~a~~~G~v~~-------i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 48 TEVEAEAAGRVVE-------FLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred EEEeCCCCEEEEE-------EEcCCcCEECCCCEEEEEe
Confidence 4699999999998 8999999999999999986
No 96
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=95.38 E-value=0.02 Score=54.03 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=31.7
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 275 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 275 ~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
...|.++.+|+|.++++++||.|..||+|++|++
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~ 75 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDP 75 (334)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 5689999999999999999999999999999864
No 97
>PF13437 HlyD_3: HlyD family secretion protein
Probab=95.26 E-value=0.03 Score=44.31 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=29.8
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEec
Q 021721 233 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 272 (308)
Q Consensus 233 ~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEam 272 (308)
+|+||+.|.+.. +.++.|+.|.+|+.|+.|..+
T Consensus 1 ~i~AP~~G~V~~-------~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 1 TIRAPFDGVVVS-------INVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CEECCCCEEEEE-------EeCCCCCEECCCCEEEEEEcc
Confidence 489999999998 889999999999999998753
No 98
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.19 E-value=0.026 Score=49.79 Aligned_cols=32 Identities=28% Similarity=0.515 Sum_probs=30.1
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|.||..|+|.++++++||.|..||+|+.|+
T Consensus 85 ~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iE 116 (153)
T PRK05641 85 NVVTAPMPGKILRILVREGQQVKVGQGLLILE 116 (153)
T ss_pred CEEECCCCeEEEEEEeCCCCEEcCCCEEEEEe
Confidence 56899999999999999999999999999886
No 99
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.10 E-value=0.041 Score=55.26 Aligned_cols=42 Identities=24% Similarity=0.295 Sum_probs=35.8
Q ss_pred EEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 267 CIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 267 ~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
|.|....-...|.+...|+|.+|+|++||.|..||+|++|.+
T Consensus 51 G~v~p~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~ 92 (457)
T TIGR01000 51 GTIEPAKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDN 92 (457)
T ss_pred EEEEecCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECc
Confidence 345544455789999999999999999999999999999864
No 100
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.05 E-value=0.036 Score=53.40 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=36.7
Q ss_pred EEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 267 CIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 267 ~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
+.|....-...|.++.+|+|.+++|++||.|..|++|+.++
T Consensus 35 G~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld 75 (423)
T TIGR01843 35 GKVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELD 75 (423)
T ss_pred eEEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEc
Confidence 45667777778999999999999999999999999999986
No 101
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=95.03 E-value=0.037 Score=54.07 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=43.1
Q ss_pred ccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 254 VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 254 VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
++.|+....-+..+.|++.+ ...|.++++|+|.++.+++|+.|..||+|++|++
T Consensus 41 v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~ 94 (385)
T PRK09859 41 LSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDP 94 (385)
T ss_pred eEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECc
Confidence 34444444445677787665 5789999999999999999999999999999974
No 102
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=94.97 E-value=0.048 Score=52.03 Aligned_cols=41 Identities=7% Similarity=0.139 Sum_probs=34.8
Q ss_pred EEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 265 VLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 265 vL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
+-+.|+. -...|.++.+|+|.++++++||.|..||+|++|.
T Consensus 35 v~G~v~~--~~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld 75 (331)
T PRK03598 35 LYGNVDI--RTVNLGFRVGGRLASLAVDEGDAVKAGQVLGELD 75 (331)
T ss_pred EEEEEee--EEEEeecccCcEEEEEEcCCCCEEcCCCEEEEEC
Confidence 3344554 3568999999999999999999999999999986
No 103
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=94.97 E-value=0.026 Score=57.47 Aligned_cols=39 Identities=28% Similarity=0.243 Sum_probs=34.2
Q ss_pred CCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEec
Q 021721 252 PFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIA 291 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilV 291 (308)
+.|++||+|++||.|+.-+.. ....|.||++|+|++|.-
T Consensus 43 ~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 43 MKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR 81 (447)
T ss_pred eEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence 789999999999999987643 578999999999999853
No 104
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=94.93 E-value=0.041 Score=53.71 Aligned_cols=53 Identities=19% Similarity=0.259 Sum_probs=41.4
Q ss_pred cCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 255 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 255 kvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
+.|+.-..-...+.|++.. ...|.++.+|+|.++.+++||.|..||+|++|++
T Consensus 44 ~~~~~~~~i~~~G~v~~~~-~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~ 96 (385)
T PRK09578 44 RPTSVPMTVELPGRLDAYR-QAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDP 96 (385)
T ss_pred EEecccceEEEEEEEEEee-EEEEeccCcEEEEEEECCCCCEEcCCCEEEEECC
Confidence 3333333334557777654 5789999999999999999999999999999974
No 105
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=94.85 E-value=0.037 Score=54.65 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=32.1
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 275 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 275 ~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
...|.++++|+|.++++++||.|..||+|++|++
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~ 94 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDP 94 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECc
Confidence 6789999999999999999999999999999974
No 106
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=94.81 E-value=0.047 Score=54.32 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=42.4
Q ss_pred ccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 254 VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 254 VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
++.|+.-..=+..+.|++. -...|.++++|+|.++++++|+.|..||+|++|.+
T Consensus 67 v~~~~~~~~i~~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~ 120 (415)
T PRK11556 67 ATEQAVPRYLTGLGTVTAA-NTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDP 120 (415)
T ss_pred EEEeccceEEEEEEEEEee-eEEEEEccccEEEEEEECCCCCEecCCCEEEEECc
Confidence 3444433333456788875 45789999999999999999999999999999964
No 107
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=94.79 E-value=0.054 Score=52.54 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=36.2
Q ss_pred EEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 265 VLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 265 vL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
.-+.|++.. ...|.++.+|+|.++.+++|+.|..||+|+.|++
T Consensus 52 ~~G~v~~~~-~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 52 ATGKLDALR-KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred EEEEEEeee-EEEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 445566544 4589999999999999999999999999999864
No 108
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=94.70 E-value=0.061 Score=48.24 Aligned_cols=65 Identities=28% Similarity=0.379 Sum_probs=46.2
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEec----CCEEEEEEecceeeEEecCCCeEEEE-------------------
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIVE------------------- 288 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~Vkk----GqvL~iIEamK~~~eI~Ap~sGvV~e------------------- 288 (308)
..|.||+.|++.. +-++-|.|=. |+-++++=.. ..|.||++|+|..
T Consensus 21 ~~i~aP~~G~vi~--------L~~V~D~vFs~k~mGdGvAI~P~~---~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiL 89 (169)
T PRK09439 21 IEIIAPLSGEIVN--------IEDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELF 89 (169)
T ss_pred eEEEecCCeEEEE--------hHHCCChHhcccCccceEEEEccC---CEEEecCCeEEEEEcCCCCEEEEEeCCCcEEE
Confidence 4688999999884 5566666555 6666655432 5677777776654
Q ss_pred ----------------EecCCCCccCCCCeEEEEc
Q 021721 289 ----------------IIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 289 ----------------ilVe~Gd~V~~GqpL~~Ie 307 (308)
.+++.||.|..||+|+++.
T Consensus 90 IHiGiDTV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D 124 (169)
T PRK09439 90 VHFGIDTVELKGEGFKRIAEEGQRVKVGDPIIEFD 124 (169)
T ss_pred EEEeecccccCCCceEEEecCCCEEeCCCEEEEEc
Confidence 3477889999999999874
No 109
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=94.66 E-value=0.053 Score=53.39 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=37.1
Q ss_pred EEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 265 VLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 265 vL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
..+.|++.. ...|.+.++|+|.++.+++||.|..||+|++|++
T Consensus 56 ~~G~v~a~~-~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~ 98 (397)
T PRK15030 56 LPGRTSAYR-IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDP 98 (397)
T ss_pred EEEEEEEEE-EEEEEecCcEEEEEEEcCCCCEecCCCEEEEECC
Confidence 445666644 5789999999999999999999999999999974
No 110
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=94.59 E-value=0.06 Score=53.26 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=32.3
Q ss_pred ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 273 KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 273 K~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
.-...|.++.+|+|.+++|++|+.|..||+|++|.+
T Consensus 56 ~~~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~ 91 (421)
T TIGR03794 56 SGVDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQ 91 (421)
T ss_pred CceeEEECCCCeEEEEEECCCcCEECCCCEEEEECc
Confidence 334589999999999999999999999999999863
No 111
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=94.38 E-value=0.035 Score=56.45 Aligned_cols=38 Identities=37% Similarity=0.324 Sum_probs=33.3
Q ss_pred CCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII 290 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eil 290 (308)
+.|++||+|++||.|+.-+.. ....|.||++|+|++|.
T Consensus 44 ~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 44 MKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN 81 (448)
T ss_pred eEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence 789999999999999966543 56899999999999994
No 112
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=94.36 E-value=0.045 Score=61.50 Aligned_cols=68 Identities=19% Similarity=0.191 Sum_probs=55.5
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.+|...+.|..+. +.|+.|+.+..++.....+... ...|.||..|+|.+++++.||.|..||+|+.|+
T Consensus 1039 r~v~fElNGq~re-------V~V~D~s~~~~~~~~~KAd~~~-~~~I~a~~~G~v~~~~v~~Gd~V~~Gd~L~~iE 1106 (1143)
T TIGR01235 1039 REVFFELNGQPRR-------IKVPDRSHKAEAAVRRKADPGN-PAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVLE 1106 (1143)
T ss_pred EEEEEEECCeEEE-------EEecCccccccccccccccccc-CceeecCCCcEEEEEEeCCCCEeCCCCEEEEEE
Confidence 4677788888776 7788888888777665554332 357999999999999999999999999999986
No 113
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=94.35 E-value=0.042 Score=55.32 Aligned_cols=38 Identities=45% Similarity=0.580 Sum_probs=33.9
Q ss_pred CCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII 290 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eil 290 (308)
+.|++||+|++||.|+..+ ......|.||++|+|++|.
T Consensus 45 ~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 45 PIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred eeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 7899999999999999984 4467899999999999875
No 114
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=94.27 E-value=0.025 Score=51.94 Aligned_cols=33 Identities=33% Similarity=0.502 Sum_probs=23.1
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEec
Q 021721 233 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 272 (308)
Q Consensus 233 ~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEam 272 (308)
.|.++..|++.. .+|++||.|++||+|+.|+..
T Consensus 3 ~Vq~~~~G~V~~-------i~V~eG~~VkkGq~L~~LD~~ 35 (305)
T PF00529_consen 3 IVQSLVGGIVTE-------ILVKEGQRVKKGQVLARLDPT 35 (305)
T ss_dssp EE--SS-EEEEE-------E-S-TTEEE-TTSECEEE--H
T ss_pred EEeCCCCeEEEE-------EEccCcCEEeCCCEEEEEEee
Confidence 578899999999 899999999999999999853
No 115
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=94.21 E-value=0.06 Score=47.61 Aligned_cols=39 Identities=38% Similarity=0.517 Sum_probs=29.3
Q ss_pred CCccCCCEEecCCEEEEEEecceee-EEecCCCeEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEAMKLMN-EIEADRSGTIVEII 290 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEamK~~~-eI~Ap~sGvV~eil 290 (308)
+.+.+|++|++||.|+.|.+.|-.+ -|+||++|+|.-+.
T Consensus 94 ~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~ 133 (150)
T PF09891_consen 94 PIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI 133 (150)
T ss_dssp ESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred EEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence 6799999999999999999999654 48899999998765
No 116
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=93.98 E-value=0.074 Score=50.95 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=31.0
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 276 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
..|.++++|+|.++++++||.|..||+|++|++
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~ 80 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQ 80 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECc
Confidence 569999999999999999999999999999874
No 117
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=93.91 E-value=0.19 Score=42.98 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=16.6
Q ss_pred EEecCCCCccCCCCeEEEEc
Q 021721 288 EIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 288 eilVe~Gd~V~~GqpL~~Ie 307 (308)
+++++.||.|..||+|+++.
T Consensus 83 ~~~vk~Gd~V~~G~~l~~~D 102 (124)
T cd00210 83 TSHVEEGQRVKQGDKLLEFD 102 (124)
T ss_pred EEEecCCCEEcCCCEEEEEc
Confidence 34578999999999999874
No 118
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=93.86 E-value=0.074 Score=50.75 Aligned_cols=39 Identities=33% Similarity=0.287 Sum_probs=31.0
Q ss_pred CCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEec
Q 021721 252 PFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIA 291 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilV 291 (308)
..|++||+|++||+|++=.-. -.+-..||++|+|.+|.-
T Consensus 43 m~VkeGD~Vk~Gq~LF~dK~~-p~v~ftsPvsG~V~~I~R 81 (257)
T PF05896_consen 43 MLVKEGDRVKAGQPLFEDKKN-PGVKFTSPVSGTVKAINR 81 (257)
T ss_pred EEeccCCEEeCCCeeEeeCCC-CCcEEecCCCeEEEEEec
Confidence 679999999999999864321 234577999999998764
No 119
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=93.61 E-value=0.089 Score=52.15 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=31.0
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 276 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
..|-+.++|+|.++++++++.|..|++||+|.|
T Consensus 54 v~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~ 86 (352)
T COG1566 54 VPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDP 86 (352)
T ss_pred EEEcCcCceEEEEEEecCCCEecCCCeEEEECc
Confidence 578899999999999999999999999999986
No 120
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=93.44 E-value=0.1 Score=47.45 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=29.7
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|+||++|+|..+.+..|+.|..|++|+.|.
T Consensus 89 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~ 120 (265)
T TIGR00999 89 VEVRSPFDGYITQKSVTLGDYVAPQAELFRVA 120 (265)
T ss_pred EEEECCCCeEEEEEEcCCCCEeCCCCceEEEE
Confidence 46899999999999999999999999999874
No 121
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=93.15 E-value=0.095 Score=56.12 Aligned_cols=38 Identities=45% Similarity=0.496 Sum_probs=32.9
Q ss_pred CCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII 290 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eil 290 (308)
+.|++||+|.+||.|+.-+ .-+...|.||.+|+|+.|.
T Consensus 51 ~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 51 LCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred ceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence 7899999999999999664 3356899999999999874
No 122
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=93.14 E-value=0.067 Score=55.45 Aligned_cols=37 Identities=46% Similarity=0.552 Sum_probs=34.3
Q ss_pred CCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII 290 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eil 290 (308)
++|++||+|.+||.|..=+. .+..+.||.+|+|.+|.
T Consensus 47 ~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 47 LLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred eEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 67999999999999998775 88999999999999987
No 123
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=92.96 E-value=0.26 Score=41.99 Aligned_cols=20 Identities=20% Similarity=0.322 Sum_probs=17.0
Q ss_pred EEecCCCCccCCCCeEEEEc
Q 021721 288 EIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 288 eilVe~Gd~V~~GqpL~~Ie 307 (308)
+.+++.||.|..||+|+++.
T Consensus 83 ~~~v~~Gd~V~~G~~l~~~D 102 (121)
T TIGR00830 83 TSHVEEGQRVKKGDPLLEFD 102 (121)
T ss_pred EEEecCCCEEcCCCEEEEEc
Confidence 45688999999999999874
No 124
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=92.75 E-value=0.25 Score=45.15 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=36.7
Q ss_pred cCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 262 KGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 262 kGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
.-...+.+++ .....|.+...|+|.++++++||.|..|++|+.+++
T Consensus 54 ~~~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 54 AVRAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred ceeeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence 3344556665 333478888999999999999999999999999863
No 125
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=92.70 E-value=0.2 Score=49.91 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=36.1
Q ss_pred EEEEEEecc-eeeEEecCCCeEEEEEe-cCCCCccCCCCeEEEEc
Q 021721 265 VLCIIEAMK-LMNEIEADRSGTIVEII-AEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 265 vL~iIEamK-~~~eI~Ap~sGvV~eil-Ve~Gd~V~~GqpL~~Ie 307 (308)
..+.|+.+. -...|.++++|+|.+++ +..||.|..||+|++|.
T Consensus 112 ~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~ 156 (409)
T PRK09783 112 FPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLT 156 (409)
T ss_pred EeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEe
Confidence 456666543 34579999999999998 99999999999999986
No 126
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=92.65 E-value=0.2 Score=43.24 Aligned_cols=65 Identities=22% Similarity=0.356 Sum_probs=40.1
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEE----ecCCEEEEEEecceeeEEecCCCeEEEE-------------------
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRV----QKGQVLCIIEAMKLMNEIEADRSGTIVE------------------- 288 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~V----kkGqvL~iIEamK~~~eI~Ap~sGvV~e------------------- 288 (308)
..|.||+.|++.. +-++-|.| --|+-++++=.. ..|.||++|+|..
T Consensus 3 ~~i~aPv~G~vi~--------l~~v~D~vFs~~~lG~GvaI~p~~---~~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiL 71 (132)
T PF00358_consen 3 ITIYAPVSGKVIP--------LEEVPDPVFSQKMLGDGVAIIPSD---GKVYAPVDGTVTMIFPTKHAIGIRSDNGVEIL 71 (132)
T ss_dssp EEEE-SSSEEEEE--------GGGSSSHHHHTTSSSEEEEEEESS---SEEEESSSEEEEEE-TTSSEEEEEETTSEEEE
T ss_pred eEEEeeCCcEEEE--------hhhCCchHHCCCCCcCEEEEEcCC---CeEEEEeeEEEEEEcCCCCEEEEEeCCCCEEE
Confidence 3578888888875 44555555 225666665433 3567777777654
Q ss_pred ----------------EecCCCCccCCCCeEEEEc
Q 021721 289 ----------------IIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 289 ----------------ilVe~Gd~V~~GqpL~~Ie 307 (308)
.+++.||.|..||+|+++.
T Consensus 72 iHiGidTv~L~G~gF~~~v~~G~~V~~G~~L~~~D 106 (132)
T PF00358_consen 72 IHIGIDTVKLNGEGFETLVKEGDKVKAGQPLIEFD 106 (132)
T ss_dssp EE-SBSGGGGTTTTEEESS-TTSEE-TTEEEEEE-
T ss_pred EEEccchhhcCCcceEEEEeCCCEEECCCEEEEEc
Confidence 3455677789999998764
No 127
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=92.64 E-value=0.081 Score=47.52 Aligned_cols=42 Identities=31% Similarity=0.419 Sum_probs=38.1
Q ss_pred ccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCC
Q 021721 254 VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK 295 (308)
Q Consensus 254 VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd 295 (308)
-++|..|.+|+.++.+|.-|...+|.+|++|+|++|.-+-++
T Consensus 88 Pe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~E 129 (172)
T KOG3373|consen 88 PEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEE 129 (172)
T ss_pred CCCCCccccCcceeeeeehhhhhhhhCcCCceEEEecccccc
Confidence 488999999999999999999999999999999999765544
No 128
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=92.36 E-value=0.15 Score=50.52 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=30.2
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|+||++|+|..+.+..|+.|..|++|+.|.
T Consensus 254 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~ 285 (421)
T TIGR03794 254 TRIVSQHSGRVIELNYTPGQLVAAGAPLASLE 285 (421)
T ss_pred CeEEcCCCeEEEEeeCCCCCEecCCCcEEEEE
Confidence 67999999999999999999999999999884
No 129
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=91.48 E-value=1.8 Score=43.07 Aligned_cols=145 Identities=19% Similarity=0.198 Sum_probs=87.1
Q ss_pred hhhcccccCCCceeEEEecCCCCCCCCCc---cccccCCCCCCCCCCCccccccccccHHHHHHHHHHHhhCCCcEEEEE
Q 021721 83 RSFLDSLLGTPVEFKVAFDGSSNASATPA---AETKDAKQPNEPSPSILASEESISEFISQVSSLIKLVDSRDIVELQLK 159 (308)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~qI~eLIklld~S~I~ELeLk 159 (308)
+.++..++.+.....|-+.|+.+-..... .++...+++.-.. . .++.++|++-|.. +-.+|+=+.++
T Consensus 96 ~f~~~l~~lS~fIW~IeI~Gn~~~~~~~I~~~L~e~Gi~~G~~k~--------~-id~~~~ie~~l~~-~~~~i~WV~i~ 165 (385)
T PF06898_consen 96 LFLALLYILSSFIWSIEIEGNEPVTEEEILQFLEENGIKPGAWKF--------K-IDSCEEIEKKLRK-QFPDISWVGIE 165 (385)
T ss_pred HHHHHHHHHcCeEEEEEEECCCCCCHHHHHHHHHHcCCCcCeeec--------C-CChHHHHHHHHHh-hCCCeEEEEEE
Confidence 34555667888899999999987654433 3444444443322 1 1127778776632 33467777777
Q ss_pred eCCeEEEEEecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCcC
Q 021721 160 QLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMA 239 (308)
Q Consensus 160 ~~d~~L~LrK~~~~~~~~~~a~~~~~~sp~~~p~ap~~~~~pa~a~~ap~a~~a~pa~~~~~~~~~~~~~~~~~V~APm~ 239 (308)
-.|.++.|+-.+... |. .. .......|.|-..
T Consensus 166 ~~GT~l~I~v~E~~~--------------------------p~--~~--------------------~~~~p~~lVA~kd 197 (385)
T PF06898_consen 166 IKGTRLIIEVVEKVD--------------------------PE--EI--------------------DKEEPCNLVAKKD 197 (385)
T ss_pred EEeeEEEEEEEEcCC--------------------------CC--cc--------------------cCCCCcceEECCC
Confidence 778888887654310 00 00 0001135677777
Q ss_pred eEEEcCCCCCCCCCccCCCEEecCCEE--EEEEecceeeEEecCCCeEEE
Q 021721 240 GTFYRSPAPGEPPFVKVGDRVQKGQVL--CIIEAMKLMNEIEADRSGTIV 287 (308)
Q Consensus 240 Gt~~r~p~p~~~~~VkvGD~VkkGqvL--~iIEamK~~~eI~Ap~sGvV~ 287 (308)
|.+.+.-.-...+.|++||.|++||+| +.|+...-..+ -..+|.|.
T Consensus 198 GvI~~i~v~~G~p~Vk~Gd~VkkGdvLISG~i~~~~~~~~--v~A~G~V~ 245 (385)
T PF06898_consen 198 GVITSIIVRSGTPLVKVGDTVKKGDVLISGVIEIEGDEQE--VHADGDVK 245 (385)
T ss_pred CEEEEEEecCCeEEecCCCEECCCCEEEeeeEcCCCCceE--ECCcEEEE
Confidence 877765555556889999999999998 55654443333 33456554
No 130
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=91.47 E-value=0.38 Score=51.28 Aligned_cols=66 Identities=23% Similarity=0.410 Sum_probs=46.6
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEec----CCEEEEEEecceeeEEecCCCeEEEEE-----------------
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIVEI----------------- 289 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~Vkk----GqvL~iIEamK~~~eI~Ap~sGvV~ei----------------- 289 (308)
...|.||+.|++.. +-++-|.|=. ||-++++=++ ..|.||++|+|..+
T Consensus 498 ~~~v~aP~~G~vi~--------l~~v~D~vFs~~~~G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G~ei 566 (648)
T PRK10255 498 IAELVSPITGDVVA--------LDQVPDEAFASKAVGDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKGAEI 566 (648)
T ss_pred ceEEEecCCcEEEE--------cccCcchhhhcccccCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCCCEE
Confidence 34699999999985 4455554443 5666655433 47777888777653
Q ss_pred ------------------ecCCCCccCCCCeEEEEc
Q 021721 290 ------------------IAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 290 ------------------lVe~Gd~V~~GqpL~~Ie 307 (308)
++++||.|..||+|+++.
T Consensus 567 LIHiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D 602 (648)
T PRK10255 567 VVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMD 602 (648)
T ss_pred EEEeccchhccCCCCceEEecCCCEEcCCCEEEEEc
Confidence 377899999999999874
No 131
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=91.43 E-value=0.22 Score=52.61 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=30.4
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.+|.||..|+|.++++++||.|+.||+|+.|+
T Consensus 526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iE 557 (596)
T PRK14042 526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIE 557 (596)
T ss_pred CeEecCcceEEEEEEeCCCCEeCCCCEEEEEE
Confidence 46999999999999999999999999999986
No 132
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=90.92 E-value=0.18 Score=44.42 Aligned_cols=33 Identities=30% Similarity=0.486 Sum_probs=30.4
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEE
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIE 270 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIE 270 (308)
...|.|+..|++.+ ++++.||.|..||.|++|+
T Consensus 124 ~~eI~A~~~G~v~~-------i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 124 MNEIEAEVAGKVVE-------ILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred ceEEecCCCcEEEE-------EEeCCCCEECCCCEEEEEC
Confidence 35799999999999 9999999999999999985
No 133
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=90.88 E-value=0.69 Score=41.53 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=18.2
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
++|++||+|++||.|+.+.-
T Consensus 106 ~~Vk~Gd~Vk~G~~L~~~D~ 125 (169)
T PRK09439 106 RIAEEGQRVKVGDPIIEFDL 125 (169)
T ss_pred EEecCCCEEeCCCEEEEEcH
Confidence 77999999999999999864
No 134
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=90.77 E-value=0.22 Score=46.70 Aligned_cols=35 Identities=23% Similarity=0.507 Sum_probs=31.9
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecc
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK 273 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK 273 (308)
..|.||..|++.. ..+++||.|..||+|+.|+.+.
T Consensus 46 ~~~~a~~~g~~~~-------~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 46 NEVEAPAAGTLRR-------QVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred EEEecCCCeEEEE-------EEcCCCCEeCCCCEEEEEecCC
Confidence 4799999999998 8999999999999999998653
No 135
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=90.69 E-value=0.37 Score=43.93 Aligned_cols=48 Identities=19% Similarity=0.265 Sum_probs=39.1
Q ss_pred CccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEE
Q 021721 253 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLF 304 (308)
Q Consensus 253 ~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~ 304 (308)
++++|+.+++||.++.++-+ ..+.+.-|.+ .++.++.||.|..|+.+.
T Consensus 155 ~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi 202 (206)
T PRK05305 155 YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVL 202 (206)
T ss_pred eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEE
Confidence 57999999999999999976 4555666655 278899999999998553
No 136
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=90.52 E-value=0.21 Score=43.83 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=30.4
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEE
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIE 270 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIE 270 (308)
...|+||..|++.+ ++++.|+.|..||.|+.|+
T Consensus 123 ~~eI~a~~~G~i~~-------i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 123 MNEIEADKSGVVTE-------ILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred ceEEecCCCeEEEE-------EEcCCCCEeCCCCEEEEeC
Confidence 35899999999999 9999999999999999885
No 137
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=90.45 E-value=0.4 Score=48.21 Aligned_cols=39 Identities=33% Similarity=0.251 Sum_probs=31.2
Q ss_pred CCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEec
Q 021721 252 PFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIA 291 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilV 291 (308)
..|++||.|++||+|++-.-. --+-+.||++|+|++|.-
T Consensus 43 mkV~~gD~VkkGq~LfEdKkn-pgv~~Tap~sG~V~aI~R 81 (447)
T COG1726 43 MKVREGDAVKKGQVLFEDKKN-PGVVFTAPVSGKVTAIHR 81 (447)
T ss_pred ceeccCCeeeccceeeecccC-CCeEEeccCCceEEEeec
Confidence 679999999999999875321 234588999999998874
No 138
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=90.33 E-value=0.45 Score=42.83 Aligned_cols=48 Identities=17% Similarity=0.276 Sum_probs=39.6
Q ss_pred CccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEE
Q 021721 253 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLF 304 (308)
Q Consensus 253 ~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~ 304 (308)
++++|+.|++||.++.++-+ -.+.+--|.+ .++.++.|+.|..|+.|+
T Consensus 135 ~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli 182 (189)
T TIGR00164 135 YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL 182 (189)
T ss_pred ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence 57899999999999999976 4555666665 367899999999999775
No 139
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=90.28 E-value=0.34 Score=46.70 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=28.0
Q ss_pred EecCCCeEEEE-------EecCCCCccCCCCeEEEEc
Q 021721 278 IEADRSGTIVE-------IIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 278 I~Ap~sGvV~e-------ilVe~Gd~V~~GqpL~~Ie 307 (308)
|.||..|++.+ ++++.||.|+.||+|+.|+
T Consensus 200 V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIE 236 (274)
T PLN02983 200 LKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIE 236 (274)
T ss_pred EeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEE
Confidence 78999999999 5999999999999999986
No 140
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=90.23 E-value=0.53 Score=50.04 Aligned_cols=64 Identities=17% Similarity=0.311 Sum_probs=46.9
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEec----CCEEEEEEecceeeEEecCCCeEEEE--------------------
Q 021721 233 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIVE-------------------- 288 (308)
Q Consensus 233 ~V~APm~Gt~~r~p~p~~~~~VkvGD~Vkk----GqvL~iIEamK~~~eI~Ap~sGvV~e-------------------- 288 (308)
.|.||+.|++.. +-++.|.|=. ||-++++=.+ ..|.||++|+|..
T Consensus 480 ~i~aP~~G~v~~--------L~~v~D~vFs~~~mG~G~AI~P~~---~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLi 548 (627)
T PRK09824 480 GICSPMTGEVVP--------LEQVADTTFASGLLGKGIAILPSV---GEVRSPVAGRVASLFATLHAIGLESDDGVEVLI 548 (627)
T ss_pred hcccccceEEee--------HHHCCCccccccccCCceEecCCC---CeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEE
Confidence 589999999984 5677776655 6666655332 4777777777663
Q ss_pred ---------------EecCCCCccCCCCeEEEEc
Q 021721 289 ---------------IIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 289 ---------------ilVe~Gd~V~~GqpL~~Ie 307 (308)
.++++||.|+.||+|+++.
T Consensus 549 HiGiDTV~L~G~gF~~~v~~Gd~V~~G~~l~~~D 582 (627)
T PRK09824 549 HVGIDTVKLDGKFFTAHVNVGDKVNTGDLLIEFD 582 (627)
T ss_pred EechhhhhcCCCCceEEecCCCEEcCCCEEEEEc
Confidence 4567899999999999874
No 141
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=90.20 E-value=0.69 Score=48.87 Aligned_cols=55 Identities=25% Similarity=0.469 Sum_probs=35.7
Q ss_pred CCccCCCEEecCCEEEEEEecce-------eeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021721 252 PFVKVGDRVQKGQVLCIIEAMKL-------MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEamK~-------~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~I 306 (308)
.+|++||+|++||.|+.++-..+ ..+|.-.-......+....+..|..|++++.+
T Consensus 548 ~~v~~g~~V~~G~~l~~~d~~~i~~~~~~~~~~vvv~n~~~~~~~~~~~~~~~~~~~~~~~~ 609 (610)
T TIGR01995 548 ILVKVGDHVKAGQLLLTFDLDKIKEAGYDPTTPVVVTNTKDFLDVIPTDKETVTAGDVLLRL 609 (610)
T ss_pred EEecCcCEEcCCCEEEEecHHHHHhcCCCCeeEEEEEccccccceeeccCCcccCCCeeEEe
Confidence 67999999999999999865332 22222211222233344556678999988875
No 142
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=89.87 E-value=0.36 Score=50.91 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=30.9
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 275 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 275 ~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
...|.||..|+|.++++++||.|+.||+|+.|+
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iE 556 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILE 556 (593)
T ss_pred CceEECCccEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 447999999999999999999999999999986
No 143
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=89.81 E-value=0.21 Score=50.22 Aligned_cols=33 Identities=15% Similarity=0.346 Sum_probs=30.0
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEe
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEa 271 (308)
..|.++..|.+.. .+|++||.|++||+|+.|+.
T Consensus 60 ~~vq~~~~G~v~~-------i~V~eG~~V~~G~~L~~ld~ 92 (457)
T TIGR01000 60 SKIQSTSNNAIKE-------NYLKENKFVKKGDLLVVYDN 92 (457)
T ss_pred EEEEcCCCcEEEE-------EEcCCCCEecCCCEEEEECc
Confidence 4789999999998 89999999999999999864
No 144
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=89.76 E-value=0.37 Score=50.63 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=30.9
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 275 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 275 ~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
...|.||..|+|.++++++||.|..||+|+.|+
T Consensus 517 ~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iE 549 (582)
T TIGR01108 517 GTPVTAPIAGSIVKVKVSEGQTVAEGEVLLILE 549 (582)
T ss_pred CCeEeCCccEEEEEEEeCCCCEECCCCEEEEEE
Confidence 357999999999999999999999999999986
No 145
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=89.42 E-value=3.4 Score=41.27 Aligned_cols=124 Identities=17% Similarity=0.161 Sum_probs=75.3
Q ss_pred hcccccCCCceeEEEecCCCCCCCCCc---cccccCCCCCCCCCCCccccccccccHHHHHHHH-HHHhhCCCcEEEEEe
Q 021721 85 FLDSLLGTPVEFKVAFDGSSNASATPA---AETKDAKQPNEPSPSILASEESISEFISQVSSLI-KLVDSRDIVELQLKQ 160 (308)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~qI~eLI-klld~S~I~ELeLk~ 160 (308)
++..++.+.....|-..|+.+-..... .++...+++--.+ .+ |.++|++-| +.+ .+|+=+.++-
T Consensus 95 ~~ll~~lS~fIW~IeI~Gn~~~t~~~i~~~L~e~Gi~~G~~k~--------~i--d~~~ie~~l~~~~--~~i~WV~v~i 162 (382)
T TIGR02876 95 LAIVYFLSNFIWKIDITGVKGETPYEIRKQLKEMGIKPGVWKF--------SV--DVYKLERKLLDRV--PEIMWAGVRV 162 (382)
T ss_pred HHHHHHHhheEEEEEEECCCCCCHHHHHHHHHHcCCCcCeeeC--------CC--CHHHHHHHHHhhC--CCcEEEEEEE
Confidence 445567777888899999877554432 4455555543332 11 566666533 333 5666677777
Q ss_pred CCeEEEEEecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCcCe
Q 021721 161 LDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMAG 240 (308)
Q Consensus 161 ~d~~L~LrK~~~~~~~~~~a~~~~~~sp~~~p~ap~~~~~pa~a~~ap~a~~a~pa~~~~~~~~~~~~~~~~~V~APm~G 240 (308)
.|.+|.|+-.+.... |.. . . ......|.|-..|
T Consensus 163 ~GTrl~i~v~Ek~~~-------------------------p~~-~-~--------------------~~~P~~lVA~kdG 195 (382)
T TIGR02876 163 RGTTLVIKVVEKQEP-------------------------KPV-L-K--------------------KAEPRNIVAKKDG 195 (382)
T ss_pred EeEEEEEEEEecCCC-------------------------CCc-c-c--------------------cCCCccEEECCCC
Confidence 788888776553110 000 0 0 0011357777888
Q ss_pred EEEcCCCCCCCCCccCCCEEecCCEEE
Q 021721 241 TFYRSPAPGEPPFVKVGDRVQKGQVLC 267 (308)
Q Consensus 241 t~~r~p~p~~~~~VkvGD~VkkGqvL~ 267 (308)
.+.+.-.-...+.|++||.|++||+|.
T Consensus 196 vI~~i~v~~G~p~Vk~GD~VkkGqvLI 222 (382)
T TIGR02876 196 VIKRVYVTSGEPVVKKGDVVKKGDLLI 222 (382)
T ss_pred EEEEEEEcCCeEEEccCCEEcCCCEEE
Confidence 877654445558899999999999984
No 146
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=89.24 E-value=0.9 Score=48.32 Aligned_cols=55 Identities=24% Similarity=0.427 Sum_probs=34.4
Q ss_pred CCccCCCEEecCCEEEEEEecce-------eeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021721 252 PFVKVGDRVQKGQVLCIIEAMKL-------MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEamK~-------~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~I 306 (308)
.+|++||+|++||.|+.++-..+ ..+|.-.-......+....+..|..|++|+.+
T Consensus 564 ~~v~~Gd~V~~G~~l~~~D~~~i~~~g~~~~~~vvvtn~~~~~~~~~~~~~~v~~~~~~~~~ 625 (627)
T PRK09824 564 AHVNVGDKVNTGDLLIEFDIPAIREAGYDLTTPVLISNSDDYTDVLPHATAQVSAGEPLLSI 625 (627)
T ss_pred EEecCCCEEcCCCEEEEEcHHHHHhcCCCCeEEEEEEccccccceeeccCCcccCCCeEEEe
Confidence 78999999999999999865322 22222111111222333455678999998876
No 147
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=88.98 E-value=0.32 Score=36.22 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=28.4
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEE
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCII 269 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iI 269 (308)
..|+||..|++.+ ++++.|+.|..|+.|+.|
T Consensus 43 ~~i~ap~~G~v~~-------~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 43 SDVEAPKSGTVKK-------VLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred EEEEcCCCEEEEE-------EEeCCCCEECCCCEEEEC
Confidence 4799999999998 889999999999999875
No 148
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=88.89 E-value=0.55 Score=36.67 Aligned_cols=29 Identities=45% Similarity=0.507 Sum_probs=20.7
Q ss_pred cCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEec
Q 021721 235 KCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 272 (308)
Q Consensus 235 ~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEam 272 (308)
.-|.+|... +++.||.|++||+||.|=+.
T Consensus 28 ID~~vGi~l---------~~k~Gd~V~~Gd~l~~i~~~ 56 (75)
T PF07831_consen 28 IDPAVGIEL---------HKKVGDRVEKGDPLATIYAN 56 (75)
T ss_dssp --TT-EEEE---------SS-TTSEEBTTSEEEEEEES
T ss_pred cCcCcCeEe---------cCcCcCEECCCCeEEEEEcC
Confidence 345677664 58999999999999999654
No 149
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=88.74 E-value=0.5 Score=49.75 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=30.9
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 275 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 275 ~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
...|.||..|+|.++++++|+.|+.||+|+.|+
T Consensus 522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ie 554 (592)
T PRK09282 522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLE 554 (592)
T ss_pred CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEe
Confidence 367999999999999999999999999999986
No 150
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=88.34 E-value=0.35 Score=49.66 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=31.7
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEec
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 272 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEam 272 (308)
..|.||..|++.. +++++||.|..||+||.|+..
T Consensus 135 ~eI~Ap~~G~v~~-------ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 135 IDIASPASGVIQE-------FLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred eEEecCCCeEEEE-------EEeCCCCEecCCCEEEEeccC
Confidence 5899999999998 999999999999999999754
No 151
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=87.77 E-value=0.55 Score=49.56 Aligned_cols=31 Identities=32% Similarity=0.469 Sum_probs=29.3
Q ss_pred EEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 277 EIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 277 eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.+.||..|+|+.+.|++|+.|..||+|++++
T Consensus 577 ~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlE 607 (645)
T COG4770 577 ELLAPMPGTVVSVAVKEGQEVSAGDLLVVLE 607 (645)
T ss_pred ceecCCCceEEEEEecCCCEecCCCeEEEeE
Confidence 3889999999999999999999999999986
No 152
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=87.27 E-value=1 Score=48.18 Aligned_cols=43 Identities=21% Similarity=0.187 Sum_probs=32.1
Q ss_pred CCCccCCcCeEEEcCCCCC----------------------------CCCCccCCCEEecCCEEEEEEecc
Q 021721 231 LPPLKCPMAGTFYRSPAPG----------------------------EPPFVKVGDRVQKGQVLCIIEAMK 273 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~----------------------------~~~~VkvGD~VkkGqvL~iIEamK 273 (308)
...|.||..|++....+-. =..+|++||+|++||.|+.++-.+
T Consensus 535 ~~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~ 605 (648)
T PRK10255 535 DKIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDY 605 (648)
T ss_pred CCeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhccCCCCceEEecCCCEEcCCCEEEEEcHHH
Confidence 3589999999987633211 116799999999999999986543
No 153
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=87.17 E-value=1.3 Score=46.88 Aligned_cols=64 Identities=27% Similarity=0.414 Sum_probs=42.9
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEec----CCEEEEEEecceeeEEecCCCeEEE---------------------
Q 021721 233 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIV--------------------- 287 (308)
Q Consensus 233 ~V~APm~Gt~~r~p~p~~~~~VkvGD~Vkk----GqvL~iIEamK~~~eI~Ap~sGvV~--------------------- 287 (308)
.|.||+.|++.. +-++-|.|=. ||-+++.=. ...|.||++|+|.
T Consensus 464 ~i~aP~~G~~~~--------l~~v~D~vFs~~~~G~G~ai~P~---~~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eili 532 (610)
T TIGR01995 464 SLYAPVAGEMLP--------LNEVPDEVFSSGAMGKGIAILPT---EGEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILI 532 (610)
T ss_pred eeccccceEEee--------HhhCCCccccccCcCCceEeeCC---CCEEECCCCeEEEEEcCCCCEEEEEECCCcEEEE
Confidence 588999999885 4455555544 555554422 2456666666554
Q ss_pred --------------EEecCCCCccCCCCeEEEEc
Q 021721 288 --------------EIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 288 --------------eilVe~Gd~V~~GqpL~~Ie 307 (308)
+.++++||.|..||+|+++.
T Consensus 533 HiGidTv~l~g~gF~~~v~~g~~V~~G~~l~~~d 566 (610)
T TIGR01995 533 HVGIDTVELNGEGFEILVKVGDHVKAGQLLLTFD 566 (610)
T ss_pred EeccchhccCCCCeEEEecCcCEEcCCCEEEEec
Confidence 34578899999999999874
No 154
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=87.02 E-value=0.65 Score=41.92 Aligned_cols=64 Identities=19% Similarity=0.160 Sum_probs=47.7
Q ss_pred CCccCCcCeEEEcCCCCCCCCCc--cCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEE
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFV--KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFV 305 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~V--kvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~ 305 (308)
..|.+-.+|++.. .+ ++|+.|++||.++.++= .-.+.+--|.+- +.++.++.|+.|..|+.|+.
T Consensus 137 v~Vga~~v~~I~~--------~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~-~~~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 137 VQVGALLVGSIVL--------TVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDK-IFEWSVKPGQKVRAGETIGY 202 (202)
T ss_pred EEeccceeceeEE--------EecccCCCEEecCcEeCEEec-CCeEEEEEeCCC-ccccccCCCCEEEeeeEEeC
Confidence 3677778888774 45 78999999999999986 333444444332 33789999999999999863
No 155
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=85.84 E-value=0.82 Score=51.88 Aligned_cols=32 Identities=22% Similarity=0.515 Sum_probs=30.1
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|.||+.|+|.++++++||.|+.||+|+.|+
T Consensus 1133 ~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iE 1164 (1201)
T TIGR02712 1133 EQVESEYAGNFWKVLVEVGDRVEAGQPLVILE 1164 (1201)
T ss_pred cEEeCCceEEEEEEEeCCCCEECCCCEEEEEE
Confidence 45899999999999999999999999999986
No 156
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=85.57 E-value=0.58 Score=47.49 Aligned_cols=35 Identities=26% Similarity=0.448 Sum_probs=32.0
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecc
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK 273 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK 273 (308)
..|.||..|++.+ +++++||.|..||+|+.|+...
T Consensus 88 ~ei~Ap~~G~v~~-------i~v~~G~~V~~G~~L~~I~~~~ 122 (418)
T PTZ00144 88 VDIRAPASGVITK-------IFAEEGDTVEVGAPLSEIDTGG 122 (418)
T ss_pred EEEecCCCeEEEE-------EEeCCCCEecCCCEEEEEcCCC
Confidence 5899999999998 8999999999999999998643
No 157
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=85.22 E-value=0.68 Score=39.95 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=17.2
Q ss_pred CCccCCCEEecCCEEEEEEecce
Q 021721 252 PFVKVGDRVQKGQVLCIIEAMKL 274 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEamK~ 274 (308)
++|++||+|++||+|+.+.-.++
T Consensus 88 ~~v~~G~~V~~G~~L~~~D~~~i 110 (132)
T PF00358_consen 88 TLVKEGDKVKAGQPLIEFDLEKI 110 (132)
T ss_dssp ESS-TTSEE-TTEEEEEE-HHHH
T ss_pred EEEeCCCEEECCCEEEEEcHHHH
Confidence 88999999999999999875443
No 158
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=84.91 E-value=1.2 Score=30.96 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=25.7
Q ss_pred cCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 280 ADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 280 Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
++.+|.|..+.+..|+.|..|++|+.++
T Consensus 11 ~~~~g~i~~~~~~~g~~v~~~~~l~~~~ 38 (74)
T cd06849 11 SMTEGTIVEWLVKEGDSVEEGDVLAEVE 38 (74)
T ss_pred CCcEEEEEEEEECCCCEEcCCCEEEEEE
Confidence 5788999999999999999999999875
No 159
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=84.60 E-value=0.67 Score=42.32 Aligned_cols=32 Identities=38% Similarity=0.566 Sum_probs=29.4
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEe
Q 021721 233 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 233 ~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEa 271 (308)
.|.++..|.+.. .+|++||.|++||+|+.++.
T Consensus 68 ~v~~~~~G~v~~-------i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 68 EVLARVAGIVAE-------ILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred eEecccccEEEE-------EEccCCCeecCCCEEEEECC
Confidence 578888999998 99999999999999999986
No 160
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=83.19 E-value=0.91 Score=45.74 Aligned_cols=34 Identities=32% Similarity=0.407 Sum_probs=31.8
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEec
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 272 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEam 272 (308)
..|.+|..|++.. .+|++||+|+.||-|+.|+..
T Consensus 116 v~V~sP~sGvi~e-------~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 116 VEVPSPASGVITE-------LLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred eeccCCCcceeeE-------EecCCCCcccCCceeEEecCC
Confidence 5799999999998 899999999999999999875
No 161
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=83.17 E-value=1.7 Score=38.36 Aligned_cols=50 Identities=30% Similarity=0.450 Sum_probs=41.1
Q ss_pred ccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeE-EecCCCeEEEEEe
Q 021721 234 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNE-IEADRSGTIVEII 290 (308)
Q Consensus 234 V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~e-I~Ap~sGvV~eil 290 (308)
+.-|.-|.+.. +.+.+|++|.+||.++-+.+-|-.+- +.+|.+|+|+-+.
T Consensus 94 l~iPvEGYvVt-------pIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi~ 144 (161)
T COG4072 94 LLIPVEGYVVT-------PIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYID 144 (161)
T ss_pred EEEecCcEEEE-------EeecccchhcCCCceeEEEecccceEEecCCCCcEEEEEe
Confidence 44567777666 78899999999999999999887655 7799999998553
No 162
>PRK12999 pyruvate carboxylase; Reviewed
Probab=83.17 E-value=1.3 Score=50.13 Aligned_cols=32 Identities=28% Similarity=0.531 Sum_probs=30.3
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|.||..|+|.+++++.||.|..||+|+.|+
T Consensus 1077 ~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~le 1108 (1146)
T PRK12999 1077 GHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIE 1108 (1146)
T ss_pred ceEeCCceEEEEEEEcCCCCEECCCCEEEEEE
Confidence 56999999999999999999999999999986
No 163
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=82.28 E-value=1.1 Score=45.02 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=32.1
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecc
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK 273 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK 273 (308)
..|.||..|++.+ +++++||.|..|++|+.|+...
T Consensus 46 ~ei~a~~~G~v~~-------i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 46 LEVPAPAAGVLSE-------ILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred eEEecCCCEEEEE-------EEeCCCCEeCCCCEEEEEecCC
Confidence 5799999999998 8999999999999999998654
No 164
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=81.67 E-value=1.8 Score=38.69 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=32.6
Q ss_pred CCccCCCEEecCCEEEEEEecceee-------EEe-cCCCeEEEEEecCCCCccCCCCeEEEE
Q 021721 252 PFVKVGDRVQKGQVLCIIEAMKLMN-------EIE-ADRSGTIVEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEamK~~~-------eI~-Ap~sGvV~eilVe~Gd~V~~GqpL~~I 306 (308)
.+|++||+|++||.|+...-+.+.- +|. +..+-.-.-+....+..|..|+.++.+
T Consensus 91 ~~v~~Gd~Vk~Gd~Li~fDl~~Ik~~~~s~itpvVvtN~~~~~~~~~~~~~~~v~~g~~~~~~ 153 (156)
T COG2190 91 SLVKEGDKVKAGDPLLEFDLDLIKAKGYSTITPVVVTNMDDFKKIVKLSGGGEVKAGETLLLV 153 (156)
T ss_pred EEeeCCCEEccCCEEEEECHHHHhhcCCCceeeEEEEcchheeeeEeeccCcceecCCeeEEE
Confidence 6799999999999999886543322 211 111111111223344477888888765
No 165
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=81.11 E-value=1.4 Score=40.75 Aligned_cols=34 Identities=35% Similarity=0.558 Sum_probs=30.6
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEe
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEa 271 (308)
...|+||+.|.+.. ..++.|+.|++|+.|+.|..
T Consensus 134 ~~~i~AP~~G~V~~-------~~~~~G~~v~~g~~l~~i~~ 167 (322)
T TIGR01730 134 YTEIRAPFDGTIGR-------RLVEVGAYVTAGQTLATIVD 167 (322)
T ss_pred cCEEECCCCcEEEE-------EEcCCCceeCCCCcEEEEEc
Confidence 35799999999998 78999999999999999865
No 166
>PRK12784 hypothetical protein; Provisional
Probab=80.87 E-value=1.4 Score=35.43 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=28.9
Q ss_pred EEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 277 EIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 277 eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
+|.||+-|+|.++++.++..|-.=++||.|+
T Consensus 7 ~iyS~~~G~Vekifi~esSyVYEWEkL~~I~ 37 (84)
T PRK12784 7 EICSSYEGKVEEIFVNESSYVYEWEKLMMIR 37 (84)
T ss_pred hhcCccccEEEEEEEcCCceEEeeeeeeEEe
Confidence 5899999999999999999999889999886
No 167
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=80.34 E-value=1.5 Score=39.82 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=28.1
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEE
Q 021721 233 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIE 270 (308)
Q Consensus 233 ~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIE 270 (308)
.|+||+.|.+.. .++.+|+.|..|++|+.|-
T Consensus 90 ~i~AP~dG~V~~-------~~~~~G~~v~~g~~l~~i~ 120 (265)
T TIGR00999 90 EVRSPFDGYITQ-------KSVTLGDYVAPQAELFRVA 120 (265)
T ss_pred EEECCCCeEEEE-------EEcCCCCEeCCCCceEEEE
Confidence 579999999998 7899999999999998764
No 168
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=80.24 E-value=1.6 Score=43.84 Aligned_cols=34 Identities=32% Similarity=0.451 Sum_probs=32.0
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEec
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 272 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEam 272 (308)
.+|-||..|++.+ .++++||.|..|++||.|+..
T Consensus 46 ~EV~ap~~G~l~~-------i~~~~G~~V~Vg~~I~~i~~~ 79 (404)
T COG0508 46 MEVPAPDAGVLAK-------ILVEEGDTVPVGAVIARIEEE 79 (404)
T ss_pred EEecCCCCeEEEE-------EeccCCCEEcCCCeEEEEecC
Confidence 5799999999999 899999999999999999885
No 169
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=80.14 E-value=3.2 Score=45.90 Aligned_cols=31 Identities=32% Similarity=0.380 Sum_probs=28.6
Q ss_pred EEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 277 EIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 277 eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.|-||..|+|+++.|+.|+.|..||+|+.|+
T Consensus 1081 higApmpG~Vv~v~V~~G~~Vk~Gd~l~~ie 1111 (1149)
T COG1038 1081 HIGAPMPGVVVEVKVKKGDKVKKGDVLAVIE 1111 (1149)
T ss_pred ccCCCCCCceEEEEEccCCeecCCCeeeehh
Confidence 3569999999999999999999999999886
No 170
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=79.38 E-value=1.6 Score=43.89 Aligned_cols=34 Identities=35% Similarity=0.526 Sum_probs=31.6
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEec
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 272 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEam 272 (308)
..|.+|..|++.+ +++++|+.|..|++|+.|+..
T Consensus 44 ~ei~a~~~G~v~~-------i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 44 LEVPSPADGVLQE-------ILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred eEEecCCCEEEEE-------EEeCCCCEeCCCCEEEEEecC
Confidence 5799999999998 899999999999999999865
No 171
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=78.98 E-value=2.4 Score=51.60 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=18.3
Q ss_pred CCCCCccCCCEEecCCEEEEEE
Q 021721 249 GEPPFVKVGDRVQKGQVLCIIE 270 (308)
Q Consensus 249 ~~~~~VkvGD~VkkGqvL~iIE 270 (308)
+...+|+.|+.|++||+||.-+
T Consensus 2421 ga~l~v~~g~~V~~g~~la~wd 2442 (2836)
T PRK14844 2421 GAKLYVDEGGSVKIGDKVAEWD 2442 (2836)
T ss_pred ccEEEecCCCEecCCCEEEEEc
Confidence 3447899999999999999754
No 172
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=77.47 E-value=4.2 Score=37.69 Aligned_cols=39 Identities=28% Similarity=0.306 Sum_probs=24.5
Q ss_pred CccCCcCeEEEcC-CCCCC-----------------CCCccCCCEEecCCEEEEEEe
Q 021721 233 PLKCPMAGTFYRS-PAPGE-----------------PPFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 233 ~V~APm~Gt~~r~-p~p~~-----------------~~~VkvGD~VkkGqvL~iIEa 271 (308)
.|+||+.|.+... ..-.. ..++++|+.|..|++|+.|-.
T Consensus 136 ~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~v~~g~~l~~i~~ 192 (328)
T PF12700_consen 136 QIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQYVAAGQPLFTIAD 192 (328)
T ss_dssp HEE-SSSEEEE------------EES----------E-TT-TT-EETSTTCSEEEEE
T ss_pred ccccchhhhccccccccccccccccccccccccccceeccCCCCEECCCceeeeecc
Confidence 4999999999900 00000 278999999999999988844
No 173
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=77.27 E-value=3 Score=39.60 Aligned_cols=71 Identities=14% Similarity=0.051 Sum_probs=47.7
Q ss_pred CccCCcCeEEEcCCCC---------CCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeE
Q 021721 233 PLKCPMAGTFYRSPAP---------GEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPL 303 (308)
Q Consensus 233 ~V~APm~Gt~~r~p~p---------~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL 303 (308)
.|.|-++|.+...-.+ ....++..|+.|++||.++.++=+ -.+.+--|. |.+ ++.++.|+.|..||.|
T Consensus 186 ~VgA~~Vg~I~~~~~~~~~~~~~~r~i~~~~~~~~~v~kGee~G~F~fG-STVvllf~~-~~~-~~~v~~g~~V~~Ge~i 262 (265)
T PRK03934 186 FVGALNVGKMRFNFDERIQTNAKARFIQTYEYENLKLKKGEELGNFEMG-STIVLFSQK-GSL-EFNLKAGKSVKFGESI 262 (265)
T ss_pred EEeeEEeeEEEEEeccccccCcccCceeeeccCCceEccccEeeEEccC-CEEEEEEeC-Ccc-eEccCCCCEEEcchhh
Confidence 5666777776532111 111234569999999999999875 444454443 334 5779999999999999
Q ss_pred EEE
Q 021721 304 FVI 306 (308)
Q Consensus 304 ~~I 306 (308)
+.|
T Consensus 263 g~~ 265 (265)
T PRK03934 263 GEI 265 (265)
T ss_pred ccC
Confidence 764
No 174
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=74.70 E-value=2.8 Score=42.34 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=31.5
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecc
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK 273 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK 273 (308)
..+.+|..|++.+ +++++||.|..|++|+.|+..+
T Consensus 42 ~ev~a~~~G~v~~-------i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 42 IEITSRYKGKVAQ-------INFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred EEEecCCCEEEEE-------EEeCCCCEeCCCCEEEEEeccC
Confidence 4789999999998 8999999999999999997543
No 175
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=74.40 E-value=2.6 Score=39.96 Aligned_cols=64 Identities=9% Similarity=0.004 Sum_probs=46.4
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021721 233 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 233 ~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~I 306 (308)
.|.+-++|.+.- ...|+.|++||.++.++=+ -.+.+--|.+-.--+..+..|+.|..|+.|..+
T Consensus 195 ~Vga~~Vg~I~~---------~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~V~~Ge~ig~~ 258 (259)
T PRK03140 195 KVGAMFVNSIEL---------THERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQEVRLGEKIGTR 258 (259)
T ss_pred EEeeEEeeEEEE---------ecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCEEEcChhhccc
Confidence 456666676653 4579999999999999977 555555554422224567899999999998764
No 176
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=73.12 E-value=2.9 Score=44.05 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=27.6
Q ss_pred EecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 278 IEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 278 I~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
+.||..|+|.++++++||.|..||.|+.++
T Consensus 604 ~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~ 633 (670)
T KOG0238|consen 604 IVAPMPGIIEKVLVKPGDKVKEGQELVVLI 633 (670)
T ss_pred eecCCCCeeeeeeccchhhhcccCceEEEE
Confidence 569999999999999999999999998764
No 177
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=72.53 E-value=2.8 Score=45.62 Aligned_cols=32 Identities=31% Similarity=0.468 Sum_probs=28.9
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
-.|-||..|+|.+|.|+.|+.|..||+|+.+.
T Consensus 1107 g~igAPMpG~vieikvk~G~kV~Kgqpl~VLS 1138 (1176)
T KOG0369|consen 1107 GHIGAPMPGTVIEIKVKEGAKVKKGQPLAVLS 1138 (1176)
T ss_pred ccccCCCCCceEEEEEecCceecCCCceEeee
Confidence 34669999999999999999999999999863
No 178
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=72.00 E-value=2.6 Score=35.97 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=18.7
Q ss_pred CCccCCCEEecCCEEEEEEec
Q 021721 252 PFVKVGDRVQKGQVLCIIEAM 272 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEam 272 (308)
.+|++||+|++||.|+.+.-.
T Consensus 84 ~~v~~Gd~V~~G~~l~~~D~~ 104 (121)
T TIGR00830 84 SHVEEGQRVKKGDPLLEFDLK 104 (121)
T ss_pred EEecCCCEEcCCCEEEEEcHH
Confidence 779999999999999998743
No 179
>COG3608 Predicted deacylase [General function prediction only]
Probab=71.81 E-value=4.3 Score=40.23 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=27.8
Q ss_pred EEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 277 EIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 277 eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
-|.||..|.|. .+++.||.|+.|+.|++|.+
T Consensus 258 ~i~Ap~~G~v~-~~v~lGd~VeaG~~la~i~~ 288 (331)
T COG3608 258 MIRAPAGGLVE-FLVDLGDKVEAGDVLATIHD 288 (331)
T ss_pred eeecCCCceEE-EeecCCCcccCCCeEEEEec
Confidence 48999999775 99999999999999999863
No 180
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=71.28 E-value=4.4 Score=38.85 Aligned_cols=35 Identities=9% Similarity=0.058 Sum_probs=30.4
Q ss_pred cceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 272 MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 272 mK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
--.+.-|+||.+|++.. .++-||.|+.||.|+.|.
T Consensus 161 ~~~Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~ 195 (256)
T TIGR03309 161 YTHERVLRAPADGIVTP-TKAIGDSVKKGDVIATVG 195 (256)
T ss_pred ccceEEEECCCCeEEee-ccCCCCEEeCCCEEEEEc
Confidence 33467799999999985 999999999999999884
No 181
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=71.07 E-value=5.5 Score=46.61 Aligned_cols=52 Identities=21% Similarity=0.343 Sum_probs=44.4
Q ss_pred CCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 256 VGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 256 vGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.|-++.-|--.|.+|...=-..+++|..|.+.+.+|++|+.|..||+-++||
T Consensus 666 ~~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~YAeiE 717 (2196)
T KOG0368|consen 666 DGYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIE 717 (2196)
T ss_pred ceEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCeeeehe
Confidence 3555667777788887776777999999999999999999999999999876
No 182
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=70.93 E-value=3.6 Score=32.46 Aligned_cols=20 Identities=50% Similarity=0.647 Sum_probs=16.9
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|++++|+.|++||+|+.++.
T Consensus 49 ~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 49 WLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp ESS-TT-EEETTCEEEEEEE
T ss_pred EEeCCCCCccCCcEEEEEEe
Confidence 89999999999999999985
No 183
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=69.93 E-value=4 Score=41.49 Aligned_cols=34 Identities=12% Similarity=0.205 Sum_probs=31.5
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCE-EecCCEEEEEEec
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDR-VQKGQVLCIIEAM 272 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~-VkkGqvL~iIEam 272 (308)
..|.+|..|++.+ +++++|+. |..|++|++|+..
T Consensus 43 ~ei~a~~~G~l~~-------i~v~~g~~~v~vG~~l~~i~~~ 77 (435)
T TIGR01349 43 MEFEAVEEGYLAK-------ILVPEGTKDVPVNKPIAVLVEE 77 (435)
T ss_pred eEEcCCCCEEEEE-------EEECCCCEEecCCCEEEEEecc
Confidence 5799999999998 89999999 9999999999764
No 184
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=69.89 E-value=10 Score=43.81 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=30.7
Q ss_pred CCccCCCEEecCCEEEEEEec-------ceeeEEecCCCeEEE
Q 021721 252 PFVKVGDRVQKGQVLCIIEAM-------KLMNEIEADRSGTIV 287 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEam-------K~~~eI~Ap~sGvV~ 287 (308)
.+|+.|+.|+++|+|+++-+. |..-.|.|+.+|.|.
T Consensus 405 l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI~ 447 (1331)
T PRK02597 405 LFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEVR 447 (1331)
T ss_pred EEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEEE
Confidence 689999999999999999874 355678999999864
No 185
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=68.51 E-value=8.2 Score=41.05 Aligned_cols=54 Identities=35% Similarity=0.579 Sum_probs=34.9
Q ss_pred CCccCCCEEecCCEEEEEEec-ceeeEEe--cCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 252 PFVKVGDRVQKGQVLCIIEAM-KLMNEIE--ADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEam-K~~~eI~--Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
+.+++||.|..||+|+.+.-. -+.+.|- -...|+|++| +.+|+. ...+.|++++
T Consensus 122 p~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i-~~~G~y-tv~~~i~~~~ 178 (586)
T PRK04192 122 PTVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI-VSEGDY-TVDDTIAVLE 178 (586)
T ss_pred cccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEE-ccCCCc-eeeeEEEEEE
Confidence 468999999999999998654 2333333 3347988765 445553 4455555543
No 186
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=68.26 E-value=5 Score=39.95 Aligned_cols=35 Identities=34% Similarity=0.530 Sum_probs=31.8
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecc
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK 273 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK 273 (308)
..|.||..|++.+ +++++|+.|..|++|+.|+...
T Consensus 46 ~~i~Ap~~G~i~~-------~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 46 VEIPSPVAGTVAK-------LLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred EEEeCCCCeEEEE-------EecCCCCEeCCCCEEEEEecCC
Confidence 5799999999998 8999999999999999998654
No 187
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=67.42 E-value=3.7 Score=35.09 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=18.2
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
++|++||+|++||.|+.+.-
T Consensus 84 ~~vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 84 SHVEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred EEecCCCEEcCCCEEEEEcH
Confidence 77999999999999999864
No 188
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=66.78 E-value=21 Score=32.02 Aligned_cols=66 Identities=18% Similarity=0.233 Sum_probs=37.6
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCE-EEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQV-LCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqv-L~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|.||..|++...-+-.. ..|=+-..|-. |..|--+-..+ +|.-=+.++++||.|..||+|+++.
T Consensus 43 g~vvAPvdG~v~~iFpTkH----Aigi~t~~GvEiLiHiGiDTV~L------~GegF~~~v~~Gd~Vk~Gd~Li~fD 109 (156)
T COG2190 43 GEVVAPVDGTVVLIFPTKH----AIGIETDEGVEILIHIGIDTVKL------NGEGFESLVKEGDKVKAGDPLLEFD 109 (156)
T ss_pred CeEEeccCcEEEEEeeCCc----EEEEEcCCCcEEEEEeceeeEEE------CCcceEEEeeCCCEEccCCEEEEEC
Confidence 5788999998765211111 11112222322 22222222221 3666678999999999999999864
No 189
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=65.48 E-value=7.8 Score=36.82 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=29.3
Q ss_pred ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 273 KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 273 K~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
+....|+||.+|.+. ..++.||.|..||+|++|.
T Consensus 217 ~~~~~v~A~~~G~~~-~~~~~Gd~V~~G~~ig~i~ 250 (287)
T cd06251 217 RSSVWVRAPQGGLLR-SLVKLGDKVKKGQLLATIT 250 (287)
T ss_pred cCCeEEecCCCeEEE-EecCCCCEECCCCEEEEEE
Confidence 334679999999987 5899999999999999984
No 190
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=65.13 E-value=7.9 Score=37.01 Aligned_cols=32 Identities=13% Similarity=0.076 Sum_probs=28.7
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 275 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 275 ~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
...|+||.+|.+. ..++.|+.|..||.|++|.
T Consensus 231 ~~~v~Ap~~Gi~~-~~~~~G~~V~~Gq~lg~I~ 262 (293)
T cd06255 231 RDWVAAIHGGLFE-PSVPAGDTIPAGQPLGRVV 262 (293)
T ss_pred eEEEecCCCeEEE-EecCCCCEecCCCEEEEEE
Confidence 5689999999776 7789999999999999984
No 191
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=65.05 E-value=14 Score=37.21 Aligned_cols=53 Identities=30% Similarity=0.466 Sum_probs=35.7
Q ss_pred CCccCCCEEecCCEEEEEEecc-eeeEEecC--CCeEEEEEecCCCCccCCCCeEEEE
Q 021721 252 PFVKVGDRVQKGQVLCIIEAMK-LMNEIEAD--RSGTIVEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEamK-~~~eI~Ap--~sGvV~eilVe~Gd~V~~GqpL~~I 306 (308)
+.+++||.|..||+|+.+.-.. +.+.|-.| ..|+|+.+ +..|+. ...+.++++
T Consensus 53 p~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~-~~~g~~-~~~~~~~~~ 108 (369)
T cd01134 53 PLVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI-APAGDY-TVDDVILEV 108 (369)
T ss_pred eccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE-ecCCCe-eEEEEEEEE
Confidence 4589999999999999996433 55666544 48998864 445653 334444444
No 192
>PRK11637 AmiB activator; Provisional
Probab=64.48 E-value=9.1 Score=38.29 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=25.3
Q ss_pred CCccCCcCeEEEcCCCC---------------------CCCCCccCCCEEecCCEEEEEEe
Q 021721 232 PPLKCPMAGTFYRSPAP---------------------GEPPFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p---------------------~~~~~VkvGD~VkkGqvL~iIEa 271 (308)
..|+|+..|+|...... .....|++||.|++||+|+.+-.
T Consensus 340 ~~v~A~~~G~V~~~~~~~~~G~~vii~hg~g~~t~Y~~~~~~~v~~G~~V~~G~~ig~~g~ 400 (428)
T PRK11637 340 TEVKAIADGRVLLADWLQGYGLVVVVEHGKGDMSLYGYNQSALVSVGAQVRAGQPIALVGS 400 (428)
T ss_pred CeEEecCCeEEEEeeccCCcccEEEEEeCCCcEEEccCCCcCCCCCcCEECCCCeEEeecC
Confidence 46788888876553211 12245777888888887777743
No 193
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=64.27 E-value=11 Score=39.42 Aligned_cols=42 Identities=26% Similarity=0.291 Sum_probs=34.4
Q ss_pred EEEEEecceeeEEecCCCeEEEE------------------------EecCCCCccCCCCeEEEEc
Q 021721 266 LCIIEAMKLMNEIEADRSGTIVE------------------------IIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 266 L~iIEamK~~~eI~Ap~sGvV~e------------------------ilVe~Gd~V~~GqpL~~Ie 307 (308)
...+...+...+|.|+.+|.|.. ++++.||.|..|+||++|.
T Consensus 404 ~~~~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~ 469 (493)
T TIGR02645 404 SDDIEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIY 469 (493)
T ss_pred ccccCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEE
Confidence 34455677888999999999876 4678999999999999984
No 194
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=63.74 E-value=8.1 Score=37.13 Aligned_cols=32 Identities=19% Similarity=0.058 Sum_probs=28.3
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 275 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 275 ~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..-|+||.+|.+. -.++.|+.|+.||.|++|.
T Consensus 229 ~~~v~A~~~Gl~~-~~~~~G~~V~~Gq~lg~i~ 260 (298)
T cd06253 229 VVYVNAETSGIFV-PAKHLGDIVKRGDVIGEIV 260 (298)
T ss_pred eEEEEcCCCeEEE-ECcCCCCEECCCCEEEEEe
Confidence 4679999999887 6789999999999999984
No 195
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=62.82 E-value=6.6 Score=41.26 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=24.3
Q ss_pred CCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 282 RSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 282 ~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|+|.+|++++||.|+.|++|+.|+
T Consensus 125 ~eg~I~~W~vkeGD~V~~g~~l~eVE 150 (539)
T PLN02744 125 TEGNIARWLKKEGDKVSPGEVLCEVE 150 (539)
T ss_pred ceeEEEEEEecCCCEecCCCeeEEEe
Confidence 46999999999999999999999986
No 196
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=62.70 E-value=6.5 Score=30.68 Aligned_cols=21 Identities=48% Similarity=0.639 Sum_probs=16.4
Q ss_pred CCccCCCEEecCCEEEEEEec
Q 021721 252 PFVKVGDRVQKGQVLCIIEAM 272 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEam 272 (308)
..|++||.|++||.|+.+...
T Consensus 55 ~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 55 VSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp ESS-TTSEE-TTCEEEEEBSC
T ss_pred ccceecccccCCCEEEecCCC
Confidence 459999999999999999743
No 197
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=62.39 E-value=9.4 Score=37.77 Aligned_cols=31 Identities=23% Similarity=0.100 Sum_probs=27.6
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.-|+||..|.+. -.++.||.|+.||+|++|.
T Consensus 290 ~~v~Ap~~Gl~~-~~~~~Gd~V~~G~~lg~I~ 320 (359)
T cd06250 290 EMLYAPAGGMVV-YRAAPGDWVEAGDVLAEIL 320 (359)
T ss_pred EEEeCCCCeEEE-EecCCCCEecCCCEEEEEE
Confidence 459999999887 7789999999999999984
No 198
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=61.74 E-value=10 Score=36.01 Aligned_cols=34 Identities=12% Similarity=0.016 Sum_probs=29.0
Q ss_pred ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 273 KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 273 K~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.-..-++||.+|.+. ..++.|+.|..||+|++|.
T Consensus 221 ~~~~~v~Ap~~G~~~-~~~~~G~~V~~G~~lg~i~ 254 (288)
T cd06254 221 DDVYYVTSPASGLWY-PFVKAGDTVQKGALLGYVT 254 (288)
T ss_pred cCCEEEecCCCeEEE-EecCCCCEecCCCEEEEEE
Confidence 345678999999877 7789999999999999983
No 199
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=60.96 E-value=19 Score=38.21 Aligned_cols=55 Identities=27% Similarity=0.352 Sum_probs=37.0
Q ss_pred CCccCCCEEecCCEEEEEEecceeeEE--ecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 252 PFVKVGDRVQKGQVLCIIEAMKLMNEI--EADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEamK~~~eI--~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
+.|++||+|..||+|+.+.-.-+..-| .-+..|.+..+.+..|+. ...+.|++++
T Consensus 120 P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~y-tv~d~ia~v~ 176 (588)
T COG1155 120 PAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGEY-TVEDVIATVS 176 (588)
T ss_pred cccccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCCc-eeeEEEEEEe
Confidence 457999999999999998544422332 234455555577777875 5666777663
No 200
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=60.51 E-value=10 Score=35.88 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=26.4
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEE
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIE 270 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIE 270 (308)
...|+||+.|.+.. .++.+|+.|.. +.|+.|-
T Consensus 204 ~~~i~AP~dG~V~~-------~~~~~G~~v~~-~~l~~i~ 235 (327)
T TIGR02971 204 LTYVKAPIDGRVLK-------IHAREGEVIGS-EGILEMG 235 (327)
T ss_pred cCEEECCCCeEEEE-------EecCCCCccCC-CccEEEe
Confidence 35899999999998 78999999987 6666553
No 201
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=60.04 E-value=13 Score=28.97 Aligned_cols=59 Identities=10% Similarity=0.026 Sum_probs=34.2
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 233 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 233 ~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.|.||+.|++... .... ...-+.+|+...-..-+... +..+.++.||.|..|+.|..+.
T Consensus 15 ~V~A~~~G~V~~~---------~~~~---~~g~~V~i~~~~g~~~~y~~----l~~~~v~~G~~V~~G~~IG~~g 73 (96)
T PF01551_consen 15 PVYAPADGKVVFV---------GEDP---GYGNYVIIQHGNGYITVYGH----LDSVSVKVGDRVKAGQVIGTVG 73 (96)
T ss_dssp EEEESSSEEEEEE---------EEET---TTEEEEEEEETTSEEEEEEE----ESEESS-TTSEE-TTCEEEEEB
T ss_pred EEEeCccEEEEEE---------Eecc---CCccEEEEEeCCcCCEEEec----cccccceecccccCCCEEEecC
Confidence 6999999999762 1110 22223334433322222222 5556799999999999999864
No 202
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=59.97 E-value=19 Score=38.46 Aligned_cols=53 Identities=25% Similarity=0.356 Sum_probs=37.3
Q ss_pred CccCCCEEecCCEEEEEE-ecceeeEEec--CCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 253 FVKVGDRVQKGQVLCIIE-AMKLMNEIEA--DRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 253 ~VkvGD~VkkGqvL~iIE-amK~~~eI~A--p~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.+++||.|..||+++.+. +.-+.+.|-. .++|+|++| +.+|+. ...++|++|+
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~y-tv~~~i~~~~ 178 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGNY-TVDDTVLEVE 178 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCCc-eeeeEEEEEe
Confidence 689999999999999764 4334445444 457999866 556764 5567777664
No 203
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=59.83 E-value=11 Score=36.81 Aligned_cols=30 Identities=23% Similarity=0.207 Sum_probs=27.3
Q ss_pred EEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 277 EIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 277 eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
-|+||.+|.+. -.++.|+.|+.||+|++|.
T Consensus 257 ~v~Ap~~Gi~~-~~v~~G~~V~~G~~lg~I~ 286 (325)
T TIGR02994 257 FIFAEDDGLIE-FMIDLGDPVSKGDVIARVY 286 (325)
T ss_pred EEEcCCCeEEE-EecCCCCEeCCCCEEEEEE
Confidence 59999999887 7899999999999999984
No 204
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=59.58 E-value=7.3 Score=30.34 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=18.3
Q ss_pred CCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 282 RSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 282 ~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|+. ++++.||.|+.|+||++|.
T Consensus 31 ~vGi~--l~~k~Gd~V~~Gd~l~~i~ 54 (75)
T PF07831_consen 31 AVGIE--LHKKVGDRVEKGDPLATIY 54 (75)
T ss_dssp T-EEE--ESS-TTSEEBTTSEEEEEE
T ss_pred CcCeE--ecCcCcCEECCCCeEEEEE
Confidence 34543 7899999999999999983
No 205
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=59.05 E-value=4.6 Score=36.98 Aligned_cols=30 Identities=27% Similarity=0.409 Sum_probs=25.9
Q ss_pred CcccceEeeecc--------ccccccccchhhhhcchh
Q 021721 54 WKCATVVKSQLN--------EVSFFQWFSFEDIFSNFR 83 (308)
Q Consensus 54 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 83 (308)
|-.||++.++++ ||+=|+|.|.|||+.+|.
T Consensus 118 ~Eic~V~~~~~~~~~~~npdEV~~~~wv~~e~l~~~~~ 155 (185)
T COG1443 118 NEICPVLAARLDSALDPNPDEVMDYRWVSPEDLKEMVD 155 (185)
T ss_pred eeeeeEEEEeecCCCCCChHHhhheeccCHHHHHHhhc
Confidence 455999988886 999999999999998764
No 206
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=58.41 E-value=10 Score=37.80 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=27.3
Q ss_pred cceeeEEecCCCeEEEEEe-------cCCCCccCCCCeEEE
Q 021721 272 MKLMNEIEADRSGTIVEII-------AEDRKPVSVDTPLFV 305 (308)
Q Consensus 272 mK~~~eI~Ap~sGvV~eil-------Ve~Gd~V~~GqpL~~ 305 (308)
++....|.|..+|+|+++. |+.||.|..||.|..
T Consensus 186 ~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 186 KEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred CCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 4455779999999999975 566788999999873
No 207
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=58.20 E-value=9.3 Score=39.30 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=30.4
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCC-EEecCCEEEEEEec
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGD-RVQKGQVLCIIEAM 272 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD-~VkkGqvL~iIEam 272 (308)
..|.+|..|++.+ +++++|+ .|+.|++|++|+..
T Consensus 46 ~ev~A~~~G~v~~-------i~v~~G~~~V~vG~~i~~i~~~ 80 (464)
T PRK11892 46 MEVEAVDEGTLGK-------ILVPEGTEGVKVNTPIAVLLEE 80 (464)
T ss_pred eeecCCCceEEEE-------EEecCCCcEeCCCCEEEEEccC
Confidence 5789999999998 8999995 79999999999653
No 208
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=58.18 E-value=13 Score=46.01 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=18.5
Q ss_pred CCCCCCccCCCEEecCCEEEEE
Q 021721 248 PGEPPFVKVGDRVQKGQVLCII 269 (308)
Q Consensus 248 p~~~~~VkvGD~VkkGqvL~iI 269 (308)
++.-..|+.|+.|+.||+|+.|
T Consensus 2612 ~~~~l~v~~g~~v~~gdilak~ 2633 (2890)
T PRK09603 2612 PKTSIAISDGSSVEQAEVLAKI 2633 (2890)
T ss_pred CCcEEEecCCCEecccceEeec
Confidence 4444779999999999999976
No 209
>PRK04350 thymidine phosphorylase; Provisional
Probab=57.83 E-value=17 Score=37.99 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=33.2
Q ss_pred EEEecceeeEEecCCCeEEEE------------------------EecCCCCccCCCCeEEEEc
Q 021721 268 IIEAMKLMNEIEADRSGTIVE------------------------IIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 268 iIEamK~~~eI~Ap~sGvV~e------------------------ilVe~Gd~V~~GqpL~~Ie 307 (308)
.+...+...+|.|+.+|.|.. ++++.||.|+.|+||++|.
T Consensus 398 ~~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~ 461 (490)
T PRK04350 398 DIPLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIH 461 (490)
T ss_pred hcCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEe
Confidence 355667888899999998875 4678999999999999984
No 210
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=57.72 E-value=9.9 Score=38.64 Aligned_cols=41 Identities=27% Similarity=0.310 Sum_probs=27.4
Q ss_pred CCCccCCcCeEEEcC------------------------CCCCCCCCccCCCEEecCCEEEEEEe
Q 021721 231 LPPLKCPMAGTFYRS------------------------PAPGEPPFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~------------------------p~p~~~~~VkvGD~VkkGqvL~iIEa 271 (308)
..+|+|+..|.+... +.-+...+++.||+|++||+||.|=+
T Consensus 333 ~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~~ 397 (405)
T TIGR02644 333 KEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLYS 397 (405)
T ss_pred EEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEeC
Confidence 357889988888742 12222366777888888887777753
No 211
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=57.06 E-value=10 Score=37.96 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=25.7
Q ss_pred eeeEEecCCCeEEEEEe-------cCCCCccCCCCeEEE
Q 021721 274 LMNEIEADRSGTIVEII-------AEDRKPVSVDTPLFV 305 (308)
Q Consensus 274 ~~~eI~Ap~sGvV~eil-------Ve~Gd~V~~GqpL~~ 305 (308)
....|.|..+|+|+++. |+.||.|..||.|..
T Consensus 185 ~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIs 223 (382)
T TIGR02876 185 EPRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLIS 223 (382)
T ss_pred CCccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEEE
Confidence 34578999999999985 556678999999873
No 212
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=56.74 E-value=21 Score=40.43 Aligned_cols=54 Identities=28% Similarity=0.476 Sum_probs=37.0
Q ss_pred CCccCCCEEecCCEEEEEE-ecceeeEEec--CCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 252 PFVKVGDRVQKGQVLCIIE-AMKLMNEIEA--DRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIE-amK~~~eI~A--p~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
+.+++||+|..||+++.|. +.-+.+.|-- .+.|+|+.| +..|+. ...+.+++|+
T Consensus 122 p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~-~~~g~~-~~~~~~~~~~ 178 (1017)
T PRK14698 122 PKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEI-ADEGEY-TIEEVIAKVK 178 (1017)
T ss_pred eeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEE-cCCCCc-ceeeEEEEEE
Confidence 3489999999999999985 3334444433 348999865 556763 4556666664
No 213
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=56.67 E-value=16 Score=36.10 Aligned_cols=19 Identities=5% Similarity=0.300 Sum_probs=15.1
Q ss_pred EEecCCCCccCCCCeEEEE
Q 021721 288 EIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 288 eilVe~Gd~V~~GqpL~~I 306 (308)
+++|++||.|+.||.|+++
T Consensus 271 ~i~Vk~Gq~V~~Gq~Ig~~ 289 (319)
T PRK10871 271 TMLVREQQEVKAGQKIATM 289 (319)
T ss_pred ccccCCcCEECCCCeEEeE
Confidence 4567888888888888865
No 214
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=56.23 E-value=20 Score=34.57 Aligned_cols=33 Identities=15% Similarity=-0.029 Sum_probs=28.7
Q ss_pred eeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 274 LMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 274 ~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
...-|+||.+|.+. -.++.|+.|+.||+|++|.
T Consensus 243 ~~~~v~A~~~G~~~-~~~~~G~~V~~G~~lg~i~ 275 (316)
T cd06252 243 ARCYVFAPHPGLFE-PLVDLGDEVSAGQVAGRIH 275 (316)
T ss_pred CcEEEEcCCCeEEE-EecCCCCEEcCCCEEEEEE
Confidence 34679999999776 7899999999999999974
No 215
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=54.74 E-value=7.2 Score=37.44 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=24.9
Q ss_pred EecCCCeEEEEEecCCCCccCCCCeEEE
Q 021721 278 IEADRSGTIVEIIAEDRKPVSVDTPLFV 305 (308)
Q Consensus 278 I~Ap~sGvV~eilVe~Gd~V~~GqpL~~ 305 (308)
+..++-|..-+++|++||.|..||+||.
T Consensus 32 ~~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~ 59 (257)
T PF05896_consen 32 LPDDFPGMKPKMLVKEGDRVKAGQPLFE 59 (257)
T ss_pred cCcccCCCCccEEeccCCEEeCCCeeEe
Confidence 4467788889999999999999999996
No 216
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=53.96 E-value=23 Score=33.44 Aligned_cols=47 Identities=9% Similarity=0.063 Sum_probs=36.0
Q ss_pred CccCCCEEec-CCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021721 253 FVKVGDRVQK-GQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 253 ~VkvGD~Vkk-GqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~I 306 (308)
.++.|+.|.+ |++|+... ..+|++|.+|+|. +-....|..|+..+++
T Consensus 225 ~~~~~~~~~~~G~~la~~~----~~~~~ap~~g~vl---~~p~~~~~~G~~~~~l 272 (272)
T cd06910 225 PFRGGETIPRAGTVIAHDG----GEPIRTPYDDCVL---IMPSLRPLRGQTAVRL 272 (272)
T ss_pred CcCCcceeccCCcEEEEeC----CeEEeCCCCCEEE---EccCCCCCCCceeeeC
Confidence 4677999999 99999942 3899999999774 3455556688877653
No 217
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=53.56 E-value=21 Score=37.42 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=32.6
Q ss_pred EEecceeeEEecCCCeEEEE------------------------EecCCCCccCCCCeEEEEc
Q 021721 269 IEAMKLMNEIEADRSGTIVE------------------------IIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 269 IEamK~~~eI~Ap~sGvV~e------------------------ilVe~Gd~V~~GqpL~~Ie 307 (308)
+-..+...+|.|+.+|.|.. ++++.||.|+.|+||++|.
T Consensus 408 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~ 470 (500)
T TIGR03327 408 IQVGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIY 470 (500)
T ss_pred CCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEE
Confidence 44567788999999998876 4678999999999999984
No 218
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=51.62 E-value=17 Score=42.19 Aligned_cols=23 Identities=39% Similarity=0.690 Sum_probs=20.0
Q ss_pred CCCCCCCccCCCEEecCCEEEEE
Q 021721 247 APGEPPFVKVGDRVQKGQVLCII 269 (308)
Q Consensus 247 ~p~~~~~VkvGD~VkkGqvL~iI 269 (308)
+++.-.++..||.|++||+|+.+
T Consensus 947 s~ga~~~~~~g~~v~~Gd~L~~l 969 (1331)
T PRK02597 947 SPGAVLHVRDGDLVQRGDNLALL 969 (1331)
T ss_pred CCCCEEEecCCCEecCCCeEEEE
Confidence 56777889999999999999965
No 219
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=51.55 E-value=11 Score=35.32 Aligned_cols=48 Identities=10% Similarity=-0.019 Sum_probs=36.4
Q ss_pred CCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEE
Q 021721 257 GDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFV 305 (308)
Q Consensus 257 GD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~ 305 (308)
|+.|++||.|+.++=+ -.+.+--|.+-.--+..++.|+.|..||.|..
T Consensus 189 g~~v~kGee~G~F~fG-StVvllf~~~~~~~~~~v~~g~kV~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFELG-STVILLFEADAFQLSAHLAVGQEVKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcCC-CeEEEEEeCCCcccChhhccCCEEEcChhhcc
Confidence 9999999999999875 45555555432222577889999999999864
No 220
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=51.09 E-value=20 Score=36.83 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=29.0
Q ss_pred EEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021721 266 LCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 266 L~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~I 306 (308)
|.+|+.++-.+-|.+. ...|+|..|+.|..|+||+.+
T Consensus 354 vvIldhG~gy~slyg~----~~~i~v~~G~~V~AGepIa~~ 390 (420)
T COG4942 354 VVILDHGGGYHSLYGG----NQSILVNPGQFVKAGEPIALV 390 (420)
T ss_pred EEEEEcCCccEEEecc----cceeeecCCCEeecCCchhhc
Confidence 4467788877777765 446888999999999999865
No 221
>PRK02259 aspartoacylase; Provisional
Probab=50.98 E-value=11 Score=36.07 Aligned_cols=61 Identities=11% Similarity=0.008 Sum_probs=44.8
Q ss_pred CccCC---cCeEEEcCCCCCCCCCccCC--CEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEE
Q 021721 233 PLKCP---MAGTFYRSPAPGEPPFVKVG--DRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLF 304 (308)
Q Consensus 233 ~V~AP---m~Gt~~r~p~p~~~~~VkvG--D~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~ 304 (308)
..+++ ..|.+. +.|+.| +.|++||+|+.+ .+.-...+.++..|+.. .+.+.-.++.|..++
T Consensus 216 ~pr~~~g~~~g~vh--------p~v~~~d~~~v~~G~~lf~~-~~g~~~~~~~~~~~~pv--fine~ay~~kg~a~~ 281 (288)
T PRK02259 216 YPRDENGQIAAMIH--------PQLQGRDWQPLKPGDPLFLT-FDGKTIFYEGDSTVYPV--FINEAAYYEKGIAMS 281 (288)
T ss_pred CCCCCCCCEeEEec--------hhhcCCCccccCCCCcceec-CCCCEEEecCCCCEEeE--EecHHHHHhhhhHhh
Confidence 45666 556665 568778 569999999998 66677889999988875 555666666666554
No 222
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=50.08 E-value=33 Score=36.61 Aligned_cols=52 Identities=33% Similarity=0.547 Sum_probs=35.1
Q ss_pred CccCCCEEecCCEEEEE-EecceeeEEe--cCCCeEEEEEecCCCCccCCCCeEEEE
Q 021721 253 FVKVGDRVQKGQVLCII-EAMKLMNEIE--ADRSGTIVEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 253 ~VkvGD~VkkGqvL~iI-EamK~~~eI~--Ap~sGvV~eilVe~Gd~V~~GqpL~~I 306 (308)
.+++||.|..||+++.+ |+.-+.+.|- ..+.|+|+.| +.+|+. ...++++++
T Consensus 120 ~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i-~~~g~~-~~~~~v~~~ 174 (578)
T TIGR01043 120 TVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI-AEEGDY-TVEDTIAVV 174 (578)
T ss_pred ccccCccccCCceEEEEecccceeeeeecCCCCcceEEEe-ccCCCc-eeeeeEEEE
Confidence 48999999999999988 4444555443 3358998866 445653 444555544
No 223
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=50.04 E-value=11 Score=38.63 Aligned_cols=41 Identities=27% Similarity=0.494 Sum_probs=30.2
Q ss_pred CCCccCCcCeEEEcCC------------------------CCCCCCCccCCCEEecCCEEEEEEe
Q 021721 231 LPPLKCPMAGTFYRSP------------------------APGEPPFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p------------------------~p~~~~~VkvGD~VkkGqvL~iIEa 271 (308)
...|+|+..|.+.... .-+..++++.||+|++||+|+.|=+
T Consensus 339 ~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~ 403 (437)
T TIGR02643 339 IKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGDRVEKGEPLAVVHA 403 (437)
T ss_pred EEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcCEeCCCCeEEEEEC
Confidence 3467888888776521 2223378999999999999999964
No 224
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=49.46 E-value=12 Score=38.50 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=30.9
Q ss_pred CCCccCCcCeEEEcC------------------------CCCCCCCCccCCCEEecCCEEEEEEe
Q 021721 231 LPPLKCPMAGTFYRS------------------------PAPGEPPFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~------------------------p~p~~~~~VkvGD~VkkGqvL~iIEa 271 (308)
..+|+|+..|.+... +.-+..++++.||.|++||+||.|=+
T Consensus 340 ~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~ 404 (440)
T PRK05820 340 TKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLHA 404 (440)
T ss_pred EEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEeC
Confidence 357888888888542 12233388999999999999999964
No 225
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=48.91 E-value=21 Score=35.33 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=30.6
Q ss_pred CCccCCcCeEEEcCCC-C-C--------------------CCCCccCCCEEecCCEEEEEEe
Q 021721 232 PPLKCPMAGTFYRSPA-P-G--------------------EPPFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~-p-~--------------------~~~~VkvGD~VkkGqvL~iIEa 271 (308)
..|+|...|++...-. . + ....|++||.|++||.|+.+-.
T Consensus 230 ~pV~Aaa~G~Vv~ag~~~~gyGn~ViI~H~~g~~S~Yahl~~i~Vk~Gq~V~~Gq~Ig~~G~ 291 (319)
T PRK10871 230 QAIIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGS 291 (319)
T ss_pred CeEEeccCeEEEEEeeccCCcceEEEEEeCCceEEEeeCCCccccCCcCEECCCCeEEeEcC
Confidence 4789999999776532 1 1 2367999999999999998854
No 226
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=48.73 E-value=27 Score=36.01 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=29.0
Q ss_pred ecceeeEEecCCCeEEEE-------------------------------EecCCCCccCCCCeEEEEc
Q 021721 271 AMKLMNEIEADRSGTIVE-------------------------------IIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 271 amK~~~eI~Ap~sGvV~e-------------------------------ilVe~Gd~V~~GqpL~~Ie 307 (308)
..+...+|+|+.+|.|.. ++++.||.|..|++|++|.
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~ 403 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLH 403 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEe
Confidence 355677788888887743 5678899999999999984
No 227
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=47.86 E-value=14 Score=29.18 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=18.8
Q ss_pred eEEEEEecCCCCccCCCCeEEEEc
Q 021721 284 GTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 284 GvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
|.-.++++++|+.|..|++|++++
T Consensus 44 ~~~v~~~~~dG~~v~~g~~i~~i~ 67 (88)
T PF02749_consen 44 GLEVEWLVKDGDRVEPGDVILEIE 67 (88)
T ss_dssp TEEEEESS-TT-EEETTCEEEEEE
T ss_pred cEEEEEEeCCCCCccCCcEEEEEE
Confidence 545669999999999999999985
No 228
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=46.76 E-value=32 Score=35.08 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=28.9
Q ss_pred EecceeeEEecCCCeEEEE-------------------------------EecCCCCccCCCCeEEEEc
Q 021721 270 EAMKLMNEIEADRSGTIVE-------------------------------IIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 270 EamK~~~eI~Ap~sGvV~e-------------------------------ilVe~Gd~V~~GqpL~~Ie 307 (308)
-..+...+|.|+.+|.|.. ++.+.||.|..|++|++|.
T Consensus 328 ~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~ 396 (405)
T TIGR02644 328 PKAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLY 396 (405)
T ss_pred CCCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEe
Confidence 3455667777777777763 4678899999999999984
No 229
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=46.59 E-value=14 Score=37.94 Aligned_cols=42 Identities=31% Similarity=0.238 Sum_probs=31.4
Q ss_pred CCCccCCcCeEEEcCC------------------------CCCCCCCccCCCEEecCCEEEEEEec
Q 021721 231 LPPLKCPMAGTFYRSP------------------------APGEPPFVKVGDRVQKGQVLCIIEAM 272 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p------------------------~p~~~~~VkvGD~VkkGqvL~iIEam 272 (308)
...|+|+..|.+.... .-+..++++.||.|++||+|+.|=++
T Consensus 335 ~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~~V~~g~~l~~i~~~ 400 (434)
T PRK06078 335 QIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGDSVKKGESLATIYAN 400 (434)
T ss_pred EEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcCEeCCCCeEEEEeCC
Confidence 3467888888877521 22333789999999999999998644
No 230
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=46.38 E-value=14 Score=35.96 Aligned_cols=21 Identities=52% Similarity=0.626 Sum_probs=19.4
Q ss_pred CCccCCCEEecCCEEEEEEec
Q 021721 252 PFVKVGDRVQKGQVLCIIEAM 272 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEam 272 (308)
|+++.|+.|++||+|+.++..
T Consensus 68 ~~~~DG~~v~~g~~i~~~~G~ 88 (280)
T COG0157 68 WLVKDGDRVKPGDVLAEIEGP 88 (280)
T ss_pred EEcCCCCEeCCCCEEEEEecc
Confidence 789999999999999999863
No 231
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=46.16 E-value=26 Score=43.53 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=15.4
Q ss_pred EecCCCCccCCCCeEEEE
Q 021721 289 IIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 289 ilVe~Gd~V~~GqpL~~I 306 (308)
+.|++|+.|..|+.|++|
T Consensus 2616 l~v~~g~~v~~gdilak~ 2633 (2890)
T PRK09603 2616 IAISDGSSVEQAEVLAKI 2633 (2890)
T ss_pred EEecCCCEecccceEeec
Confidence 567889999999999886
No 232
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=44.63 E-value=18 Score=37.47 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=24.3
Q ss_pred CeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 283 SGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 283 sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
.|.|++|.-++||.+..|+.|++||.
T Consensus 52 eGnIvsW~kKeGdkls~GDvl~EVET 77 (470)
T KOG0557|consen 52 EGNIVSWKKKEGDKLSAGDVLLEVET 77 (470)
T ss_pred CCceeeEeeccCCccCCCceEEEEec
Confidence 69999999999999999999999973
No 233
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=43.91 E-value=26 Score=40.87 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=32.2
Q ss_pred CCCCCccCCCEEecCCEEEEEEec--------ceeeEEecCCCeEEEE
Q 021721 249 GEPPFVKVGDRVQKGQVLCIIEAM--------KLMNEIEADRSGTIVE 288 (308)
Q Consensus 249 ~~~~~VkvGD~VkkGqvL~iIEam--------K~~~eI~Ap~sGvV~e 288 (308)
+.-.+|+.||.|++||+||++... |...+|.++.+|.|.-
T Consensus 403 gs~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v~~ 450 (1364)
T CHL00117 403 KSLLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEMHW 450 (1364)
T ss_pred CCEEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEEEc
Confidence 334789999999999999999863 3447899999998653
No 234
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=43.25 E-value=15 Score=38.30 Aligned_cols=41 Identities=32% Similarity=0.387 Sum_probs=31.7
Q ss_pred CCCccCCcCeEEEcCC-----------------CCCCCCCccCCCEEecCCEEEEEEe
Q 021721 231 LPPLKCPMAGTFYRSP-----------------APGEPPFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p-----------------~p~~~~~VkvGD~VkkGqvL~iIEa 271 (308)
...|+|+..|.+.... .-+..++++.||+|++||+|+.|=+
T Consensus 413 ~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a 470 (493)
T TIGR02645 413 TADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYA 470 (493)
T ss_pred EEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEEC
Confidence 3478899889887522 3334488999999999999999864
No 235
>PRK04350 thymidine phosphorylase; Provisional
Probab=42.32 E-value=16 Score=38.04 Aligned_cols=41 Identities=34% Similarity=0.438 Sum_probs=32.1
Q ss_pred CCCccCCcCeEEEcCC-----------------CCCCCCCccCCCEEecCCEEEEEEe
Q 021721 231 LPPLKCPMAGTFYRSP-----------------APGEPPFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p-----------------~p~~~~~VkvGD~VkkGqvL~iIEa 271 (308)
...|+||..|.+.... .-+...+++.||.|++||+|+.|=+
T Consensus 405 ~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a 462 (490)
T PRK04350 405 THDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHA 462 (490)
T ss_pred EEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEec
Confidence 3478899999887632 3344488999999999999999964
No 236
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=41.91 E-value=22 Score=34.19 Aligned_cols=50 Identities=12% Similarity=-0.037 Sum_probs=36.3
Q ss_pred CCCEEecCCEEEEEEecceeeEEecCCCeEEE-EEecCCCCccCCCCeEEEEc
Q 021721 256 VGDRVQKGQVLCIIEAMKLMNEIEADRSGTIV-EIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 256 vGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~-eilVe~Gd~V~~GqpL~~Ie 307 (308)
.|..|++||.++.++=+ -.+.+--+.+ ++. ...+..|+.|..||.|+.+.
T Consensus 236 ~~~~v~kGee~G~F~fG-StVvllfe~~-~~~~~~~v~~g~kV~~Ge~ig~~~ 286 (288)
T PRK00044 236 GAITLKKGAEMGRFKLG-STVINLFPPG-KVQLAEQLQAGSVVRMGQPLAHIT 286 (288)
T ss_pred CCCeEccccEeecccCC-CeEEEEEeCC-CceeccccCCCCEEEcChhhcCcc
Confidence 37799999999999864 4444554443 332 34578999999999998653
No 237
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=40.98 E-value=42 Score=34.58 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=16.2
Q ss_pred EecCCCCccCCCCeEEEEc
Q 021721 289 IIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 289 ilVe~Gd~V~~GqpL~~Ie 307 (308)
++++.||.|+.|++|++|.
T Consensus 384 l~~k~Gd~V~~Gd~l~~i~ 402 (437)
T TIGR02643 384 DLLPLGDRVEKGEPLAVVH 402 (437)
T ss_pred eccCCcCEeCCCCeEEEEE
Confidence 4567899999999999984
No 238
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=40.81 E-value=18 Score=37.76 Aligned_cols=41 Identities=32% Similarity=0.394 Sum_probs=31.7
Q ss_pred CCCccCCcCeEEEcCC-----------------CCCCCCCccCCCEEecCCEEEEEEe
Q 021721 231 LPPLKCPMAGTFYRSP-----------------APGEPPFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p-----------------~p~~~~~VkvGD~VkkGqvL~iIEa 271 (308)
...|+||..|.+.... .-+...+++.||.|++||+|+.|=+
T Consensus 414 ~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a 471 (500)
T TIGR03327 414 TYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYA 471 (500)
T ss_pred EEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEEC
Confidence 3478888888887522 3334488999999999999999964
No 239
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=40.63 E-value=25 Score=28.00 Aligned_cols=27 Identities=26% Similarity=0.210 Sum_probs=22.1
Q ss_pred CCCeEEEEEecC-CCCccCCCCeEEEEc
Q 021721 281 DRSGTIVEIIAE-DRKPVSVDTPLFVIE 307 (308)
Q Consensus 281 p~sGvV~eilVe-~Gd~V~~GqpL~~Ie 307 (308)
..-|.|..+... .|+.|..|++|+.|+
T Consensus 26 ~~lG~i~~i~~~~~G~~v~~g~~l~~iE 53 (96)
T cd06848 26 DLLGDIVFVELPEVGTEVKKGDPFGSVE 53 (96)
T ss_pred hhCCCEEEEEecCCCCEEeCCCEEEEEE
Confidence 346888887654 499999999999986
No 240
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=39.09 E-value=11 Score=28.84 Aligned_cols=9 Identities=56% Similarity=1.062 Sum_probs=6.2
Q ss_pred hhhhhcchh
Q 021721 75 FEDIFSNFR 83 (308)
Q Consensus 75 ~~~~~~~~~ 83 (308)
|..||||||
T Consensus 65 Ld~IFs~FC 73 (73)
T PF12631_consen 65 LDNIFSNFC 73 (73)
T ss_dssp HHHHHCTS-
T ss_pred HHHHHHhhC
Confidence 456899998
No 241
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=38.38 E-value=23 Score=33.69 Aligned_cols=40 Identities=25% Similarity=0.446 Sum_probs=32.6
Q ss_pred CccC-CcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeE
Q 021721 233 PLKC-PMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNE 277 (308)
Q Consensus 233 ~V~A-Pm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~e 277 (308)
.|++ .|.|-++. ..|+|.+|..|++=|+.|.||.+|...+
T Consensus 167 ~vrsi~~~gl~wg-----asklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 167 CVRSIEMDGLVWG-----ASKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred HHHHhhhccceec-----cccccccccceeeEEEEEEEEcCccccc
Confidence 3455 46788885 3499999999999999999999997654
No 242
>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]
Probab=38.01 E-value=24 Score=32.00 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=17.8
Q ss_pred CCCccCCCEEecCCEEEEEE
Q 021721 251 PPFVKVGDRVQKGQVLCIIE 270 (308)
Q Consensus 251 ~~~VkvGD~VkkGqvL~iIE 270 (308)
...|++||.|++||+|+.+-
T Consensus 215 ~~~V~~G~~V~~G~~Ig~~G 234 (277)
T COG0739 215 SILVKEGQKVKAGQVIGYVG 234 (277)
T ss_pred hhccCCCCEeccCCEEEEec
Confidence 47789999999999999884
No 243
>TIGR02388 rpoC2_cyan DNA-directed RNA polymerase, beta'' subunit. The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria.
Probab=37.45 E-value=34 Score=39.51 Aligned_cols=23 Identities=35% Similarity=0.664 Sum_probs=19.9
Q ss_pred CCCCCCCccCCCEEecCCEEEEE
Q 021721 247 APGEPPFVKVGDRVQKGQVLCII 269 (308)
Q Consensus 247 ~p~~~~~VkvGD~VkkGqvL~iI 269 (308)
+++.-.++..||.|++||+|+.+
T Consensus 945 s~ga~~~~~~g~~v~~Gd~L~~l 967 (1227)
T TIGR02388 945 SPGAVLHIEDGDLVQRGDNLALL 967 (1227)
T ss_pred CCCCEEEecCCCEecCCCEEEEE
Confidence 56777889999999999999975
No 244
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=36.95 E-value=23 Score=31.45 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=25.4
Q ss_pred CCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 257 GDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 257 GD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
|-.+++|+-||.+++. |..+-..+..|+.|..|+.|+.+.
T Consensus 73 ~~~l~~G~~L~l~~ve-----------G~~v~~i~~~G~rV~~gd~lA~v~ 112 (150)
T PF09891_consen 73 GILLKKGTELCLVPVE-----------GYQVYPIVDEGDRVRKGDRLAYVT 112 (150)
T ss_dssp EEEE-TT-B-EEEEEE-----------SSEEEESS-TSEEE-TT-EEEEEE
T ss_pred EEEECCCCEEEEEEec-----------ceEEEEEcccCcEeccCcEEEEEE
Confidence 3357788888888754 445557888999999999999874
No 245
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=35.90 E-value=57 Score=33.61 Aligned_cols=19 Identities=16% Similarity=0.062 Sum_probs=16.2
Q ss_pred EecCCCCccCCCCeEEEEc
Q 021721 289 IIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 289 ilVe~Gd~V~~GqpL~~Ie 307 (308)
++++.||.|..|++|++|.
T Consensus 380 l~~k~g~~V~~g~~l~~i~ 398 (434)
T PRK06078 380 LRKKVGDSVKKGESLATIY 398 (434)
T ss_pred eccCCcCEeCCCCeEEEEe
Confidence 4677899999999999974
No 246
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.29 E-value=69 Score=28.55 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=24.2
Q ss_pred CCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 281 DRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 281 p~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
|+.|.++-..+..|..|-.|++++-+.
T Consensus 97 PvEGYvVtpIaDvG~RvrkGd~~AAvt 123 (161)
T COG4072 97 PVEGYVVTPIADVGNRVRKGDPFAAVT 123 (161)
T ss_pred ecCcEEEEEeecccchhcCCCceeEEE
Confidence 678999999999999999999998763
No 247
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=34.77 E-value=68 Score=40.09 Aligned_cols=57 Identities=19% Similarity=0.295 Sum_probs=44.6
Q ss_pred CCccCCCEEecCCEEEEEEe-----------c------ce------eeEEecCCCeEEE---------------------
Q 021721 252 PFVKVGDRVQKGQVLCIIEA-----------M------KL------MNEIEADRSGTIV--------------------- 287 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa-----------m------K~------~~eI~Ap~sGvV~--------------------- 287 (308)
|...-|..|.-|+.|++|-+ | .+ ...|+|+.+|+|.
T Consensus 2322 ~~La~~~~V~iGeaVGiIAAQSIGEPGTQLTMRTFHtGGvas~~~~~~~i~~~~~G~v~~~~~~~v~~~~g~~iv~sr~~ 2401 (2836)
T PRK14844 2322 RDLATGKIVSIGEAVGVIAAQSVGEPGTQLTMRTFHIGGVMTRGVESSNIIASINAKIKLNNSNIIIDKNGNKIVISRSC 2401 (2836)
T ss_pred ccccCCCcccccccceeeeecccCCCcceeeeeheeeccccccccccceeEeccCceEEeccceeEEcCCCcEEEEeccc
Confidence 66788999999999999865 1 12 2457788888775
Q ss_pred ---------------------EEecCCCCccCCCCeEEEEcC
Q 021721 288 ---------------------EIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 288 ---------------------eilVe~Gd~V~~GqpL~~Iep 308 (308)
.++|++|+.|+.||.|+...|
T Consensus 2402 ~~~i~d~~g~~~~~~~i~yga~l~v~~g~~V~~g~~la~wdp 2443 (2836)
T PRK14844 2402 EVVLIDSLGSEKLKHSVPYGAKLYVDEGGSVKIGDKVAEWDP 2443 (2836)
T ss_pred EEEEEecCCcEEEEEecccccEEEecCCCEecCCCEEEEEcC
Confidence 346899999999999998765
No 248
>PRK06149 hypothetical protein; Provisional
Probab=34.21 E-value=49 Score=36.89 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=30.0
Q ss_pred CCCccCCcCeEEEcCCCC-----CC---------CCCccCCCEEecCCEEEEEEe
Q 021721 231 LPPLKCPMAGTFYRSPAP-----GE---------PPFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p-----~~---------~~~VkvGD~VkkGqvL~iIEa 271 (308)
...|.||+.|++.....- +. ...+++||.|++||.||.+-.
T Consensus 442 gt~v~Ap~~G~v~~~~~~~~~l~~~~~f~~l~g~~~~~~~g~~v~~G~~~~~~g~ 496 (972)
T PRK06149 442 GTAVAAPFAGTVVRDGQGHLTLRGDALELHLDGVEPAVEDGAAVRAGDPLGSVAG 496 (972)
T ss_pred CCeEECccCcEEEEecCCceEecCCCcEEEEecccccCCCCCeecCCchheecCC
Confidence 357999999998874321 00 122889999999999998875
No 249
>PF03213 Pox_P35: Poxvirus P35 protein; InterPro: IPR004900 The Poxvirus P35 protein is an immunodominant envelope protein. It binds to heparan sulphate on the cell surface to provide virion attachment to target cell [].; GO: 0019031 viral envelope
Probab=33.23 E-value=25 Score=34.95 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=25.4
Q ss_pred cccHHHHHHHHHHHhhCCCcEEEEEeCCeE
Q 021721 135 SEFISQVSSLIKLVDSRDIVELQLKQLDCE 164 (308)
Q Consensus 135 ~~~i~qI~eLIklld~S~I~ELeLk~~d~~ 164 (308)
..+++.|+.+|+.|.+.+|.-|+|++.=..
T Consensus 131 ~~~~~~l~~~I~aM~~k~idilQLre~~~~ 160 (325)
T PF03213_consen 131 LRDITTLHPIIKAMKKKNIDILQLRETYHN 160 (325)
T ss_pred ccccHHHHHHHHHHHHcCceEEEEehhhhc
Confidence 347899999999999999999999965433
No 250
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=32.00 E-value=1.1e+02 Score=27.93 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=40.0
Q ss_pred CCCccCCcCeEEEcC-CCCCCCCCccCCCEEecCC-EEEEEEecc----eeeEEecCCCeEEEEEecCCCCccCCCCeEE
Q 021721 231 LPPLKCPMAGTFYRS-PAPGEPPFVKVGDRVQKGQ-VLCIIEAMK----LMNEIEADRSGTIVEIIAEDRKPVSVDTPLF 304 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~-p~p~~~~~VkvGD~VkkGq-vL~iIEamK----~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~ 304 (308)
...+++|+.|++... .-|+.-+.+.....-.+++ .+..+|+.+ .+..|-+-..+.|. ..+++|+.+..|+-+.
T Consensus 91 ~H~~~aP~~G~V~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~~g~~~~~~i~~~~~r~I~-~~~~~g~~v~kGe~~G 169 (206)
T PRK05305 91 VHVNRAPVSGTVTKVEYRPGKFLNAFLDKASEENERNAVVIETADGGEIGVVQIAGLIARRIV-CYVKEGDEVERGERFG 169 (206)
T ss_pred CCEEEeCccCEEEEEEEECCeEEecCCCcccccCceEEEEEEeCCCCEEEEEEeCeEEccEEE-EeCCCCCEEccCcEEe
Confidence 346789999987762 1222111111111112233 445666642 22233333445554 3568899999999988
Q ss_pred EEc
Q 021721 305 VIE 307 (308)
Q Consensus 305 ~Ie 307 (308)
.++
T Consensus 170 ~f~ 172 (206)
T PRK05305 170 LIR 172 (206)
T ss_pred EEe
Confidence 764
No 251
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=31.54 E-value=1e+02 Score=27.72 Aligned_cols=69 Identities=14% Similarity=0.097 Sum_probs=37.6
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCE--------EecCC-EEEEEEecc--ee-eEEecCCCeEEEEEecCCCCccC
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDR--------VQKGQ-VLCIIEAMK--LM-NEIEADRSGTIVEIIAEDRKPVS 298 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~--------VkkGq-vL~iIEamK--~~-~eI~Ap~sGvV~eilVe~Gd~V~ 298 (308)
...+++|+.|++.. .....|+. -.+++ .++.+|+.. +. +.|-+-..+.|. ..+++|+.+.
T Consensus 72 yHr~haP~~G~v~~-------~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~G~v~~v~v~~~~~~~i~-~~~~~g~~v~ 143 (189)
T TIGR00164 72 VHVNRAPAGGKVTY-------VKHIDGSFVPAFLRKASTENERNAVLIKTASGEVGVVQIAGFVARRIV-CYVKEGEKVS 143 (189)
T ss_pred cceEEcccccEEEE-------EEEECCeEeecccCcccccceeEEEEEEcCCCCEEEEEECeEEccEEE-EecCCCCEEe
Confidence 35688888888776 22233321 12333 235566532 22 222222233333 3567899999
Q ss_pred CCCeEEEEc
Q 021721 299 VDTPLFVIE 307 (308)
Q Consensus 299 ~GqpL~~Ie 307 (308)
.|+-+..++
T Consensus 144 kGeeiG~f~ 152 (189)
T TIGR00164 144 RGQRIGMIR 152 (189)
T ss_pred cCcEEEEEe
Confidence 999988764
No 252
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=31.21 E-value=34 Score=32.56 Aligned_cols=20 Identities=55% Similarity=0.750 Sum_probs=18.9
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|+++.|+.|++||+|+.|+.
T Consensus 62 ~~~~dG~~v~~g~~i~~i~G 81 (268)
T cd01572 62 WLVKDGDRVEPGQVLATVEG 81 (268)
T ss_pred EEeCCCCEecCCCEEEEEEE
Confidence 78999999999999999985
No 253
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=30.62 E-value=78 Score=26.03 Aligned_cols=24 Identities=13% Similarity=0.026 Sum_probs=19.0
Q ss_pred CeEEEEEecCCCCccCCCCeEEEE
Q 021721 283 SGTIVEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 283 sGvV~eilVe~Gd~V~~GqpL~~I 306 (308)
.|.-.+.+|+.||.|..||.|++.
T Consensus 38 ~G~~~~p~V~~Gd~V~~GQ~Ia~~ 61 (101)
T PF13375_consen 38 IGAPAEPVVKVGDKVKKGQLIAEA 61 (101)
T ss_pred CCCcceEEEcCCCEEcCCCEEEec
Confidence 344456788999999999999875
No 254
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=30.47 E-value=23 Score=38.55 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=26.8
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecc
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK 273 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK 273 (308)
+.|.|-|+|.+.. .+++||.|++||.|+.-.=+.
T Consensus 886 VaiGAmMVGSi~l--------t~kEgd~V~~gdELGYFkFGG 919 (975)
T KOG2419|consen 886 VAIGAMMVGSILL--------TRKEGDHVKKGDELGYFKFGG 919 (975)
T ss_pred EeecceeeeeEEE--------EeecCcccccccccceEeeCC
Confidence 4678889998774 689999999999887665444
No 255
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.73 E-value=37 Score=32.67 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=18.9
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|+++.|+.|++||+|+.++.
T Consensus 68 ~~~~dG~~v~~g~~i~~~~G 87 (277)
T PRK08072 68 LHKKDGDLVKKGEIIATVQG 87 (277)
T ss_pred EEeCCCCEEcCCCEEEEEEE
Confidence 89999999999999999985
No 256
>PRK10718 RpoE-regulated lipoprotein; Provisional
Probab=29.47 E-value=1e+02 Score=28.58 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=42.6
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecc---eeeEEecCCCeEEEEEecCCCCcc
Q 021721 233 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK---LMNEIEADRSGTIVEIIAEDRKPV 297 (308)
Q Consensus 233 ~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK---~~~eI~Ap~sGvV~eilVe~Gd~V 297 (308)
.|..-..|.+ ++..|...+.|+++-+.|+|| +.++|.-+ .|+|.+|.|.+++..
T Consensus 59 aI~~~L~g~y----------~lrsGm~t~~G~iv~~~qa~~~d~v~lvi~G~-~G~V~rI~V~d~~i~ 115 (191)
T PRK10718 59 AIADALDGDY----------RLRSGMKTANGNVVRFFQAMKGDQVAMVINGQ-QGTVSRIDVLDSDIP 115 (191)
T ss_pred HHHhhcCCCc----------eEeccccCCCCCEEEeeeeecCCceEEEEECC-CCcEEEEEEeCCCCC
Confidence 4566666633 368899999999999888866 66777777 999999999999875
No 257
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=29.16 E-value=1.3e+02 Score=35.53 Aligned_cols=74 Identities=12% Similarity=0.236 Sum_probs=41.6
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCE--EecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDR--VQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~--VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
..|+||..|++.-.........-.-|+. +.+...+.+|+.......+.-|.... ++|++|+.|+.||.|+++.|
T Consensus 350 ~~i~a~~~G~i~~~~~~~~~~rt~~g~~~~~~~~~~~~~i~~~~~~~~~~ip~gs~---l~v~~g~~V~~~q~iae~~~ 425 (1364)
T CHL00117 350 EQVRAPFNGKIKFNEDLVHPTRTRHGHPAFLCKIDLYVTIESEDIIHNVNIPPKSL---LLVQNDQYVESEQVIAEIRA 425 (1364)
T ss_pred eeEEeccCeEEEEecceeeEEeCcCCEEEEEEecceEEEEeCCCeEEEEEeCCCCE---EEEeCcCEEcCCCEEEEECC
Confidence 4799999999875211111111111221 22223333444444444444444332 57999999999999999865
No 258
>PRK13380 glycine cleavage system protein H; Provisional
Probab=29.11 E-value=48 Score=28.94 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=26.5
Q ss_pred eEEecCCCeEEEEEecC-CCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVEIIAE-DRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilVe-~Gd~V~~GqpL~~Ie 307 (308)
..+....-|.|..+.+. .|+.|..|++|+.|+
T Consensus 36 td~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IE 68 (144)
T PRK13380 36 TDYAQTMAGDVVFVRLKELGKKVEKGKPVATLE 68 (144)
T ss_pred CHHHHHhcCCEEEEEcCCCCCEeeCCCeEEEEE
Confidence 34456677889998876 899999999999986
No 259
>PF12166 DUF3595: Protein of unknown function (DUF3595); InterPro: IPR021999 This family of proteins is functionally uncharacterised.This family of proteins is found in eukaryotes. Proteins in this family are typically between 578 and 2525 amino acids in length.
Probab=27.93 E-value=18 Score=35.99 Aligned_cols=16 Identities=50% Similarity=1.279 Sum_probs=14.2
Q ss_pred cccccccchhhhhcch
Q 021721 67 VSFFQWFSFEDIFSNF 82 (308)
Q Consensus 67 ~~~~~~~~~~~~~~~~ 82 (308)
+.+|+||-+||||.+.
T Consensus 22 l~l~~w~~~Edi~~~l 37 (422)
T PF12166_consen 22 LSLFDWFKLEDIYANL 37 (422)
T ss_pred ehHHHHHhHHHHHHHH
Confidence 4689999999999886
No 260
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=27.90 E-value=21 Score=30.66 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=19.5
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEE
Q 021721 233 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLC 267 (308)
Q Consensus 233 ~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~ 267 (308)
.|...-.-.+...-+++-+..|++||.|+.||+|-
T Consensus 27 tI~~~dG~~v~~~IP~GpeLiV~eG~~V~~dqpLT 61 (118)
T PF01333_consen 27 TIETSDGETVVETIPAGPELIVSEGQSVKADQPLT 61 (118)
T ss_dssp EEETTTSEEEEEEEESSS-BS--TT-EETTT-BSB
T ss_pred EEECCCCCEEEEecCCCCeEEEcCCCEEecCCccc
Confidence 44333222455555677778999999999999873
No 261
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=26.51 E-value=45 Score=32.34 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=18.8
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|+++.|+.|++||+|+.++.
T Consensus 65 ~~~~dG~~v~~G~~i~~~~G 84 (284)
T PRK06096 65 DAVSDGSQANAGQRLISAQG 84 (284)
T ss_pred EEeCCCCEeCCCCEEEEEEe
Confidence 89999999999999999975
No 262
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.49 E-value=45 Score=32.35 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=18.8
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|+++.|+.|++||+|+.++.
T Consensus 69 ~~~~dG~~v~~G~~i~~~~G 88 (281)
T PRK06543 69 LAVADGERFEAGDILATVTG 88 (281)
T ss_pred EEeCCCCEecCCCEEEEEEe
Confidence 88999999999999999985
No 263
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.14 E-value=47 Score=32.00 Aligned_cols=20 Identities=40% Similarity=0.403 Sum_probs=18.9
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|+++.|+.|++||+|+.++.
T Consensus 70 ~~~~dG~~v~~g~~i~~i~G 89 (277)
T PRK05742 70 WQVADGERVSANQVLFHLEG 89 (277)
T ss_pred EEeCCCCEEcCCCEEEEEEE
Confidence 78999999999999999985
No 264
>TIGR02388 rpoC2_cyan DNA-directed RNA polymerase, beta'' subunit. The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria.
Probab=25.40 E-value=75 Score=36.87 Aligned_cols=36 Identities=31% Similarity=0.468 Sum_probs=29.5
Q ss_pred CCccCCCEEecCCEEEEEEec-------ceeeEEecCCCeEEE
Q 021721 252 PFVKVGDRVQKGQVLCIIEAM-------KLMNEIEADRSGTIV 287 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEam-------K~~~eI~Ap~sGvV~ 287 (308)
.+|+.|+.|+++|+|+++-+. |..-.|.++.+|.|.
T Consensus 405 l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~k~i~s~~~Ge~~ 447 (1227)
T TIGR02388 405 LFVEDGQTVDAGQLLAEIALGAVRKSTEKATKDVASDLAGEVK 447 (1227)
T ss_pred EEEECCCEEecCcEEEEeccCCcccceeEEEEEEecCCCceEE
Confidence 689999999999999999874 345567788888765
No 265
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=24.34 E-value=53 Score=31.18 Aligned_cols=20 Identities=55% Similarity=0.685 Sum_probs=18.9
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|++++|+.|++|++|+.|+.
T Consensus 61 ~~~~dG~~v~~g~~i~~i~G 80 (269)
T cd01568 61 WLVKDGDRVEAGQVLLEVEG 80 (269)
T ss_pred EEeCCCCEecCCCEEEEEEE
Confidence 78999999999999999985
No 266
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.33 E-value=53 Score=31.58 Aligned_cols=20 Identities=40% Similarity=0.589 Sum_probs=18.8
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|+++.|+.|++||+|+.++.
T Consensus 62 ~~~~dG~~v~~g~~i~~i~G 81 (273)
T PRK05848 62 FTIKDGERFKKGDILMEIEG 81 (273)
T ss_pred EEcCCCCEecCCCEEEEEEE
Confidence 78999999999999999985
No 267
>PRK11637 AmiB activator; Provisional
Probab=24.28 E-value=1.3e+02 Score=30.19 Aligned_cols=18 Identities=11% Similarity=0.265 Sum_probs=15.7
Q ss_pred EecCCCCccCCCCeEEEE
Q 021721 289 IIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 289 ilVe~Gd~V~~GqpL~~I 306 (308)
+.|..|+.|..|++|+.+
T Consensus 381 ~~v~~G~~V~~G~~ig~~ 398 (428)
T PRK11637 381 ALVSVGAQVRAGQPIALV 398 (428)
T ss_pred CCCCCcCEECCCCeEEee
Confidence 568899999999999876
No 268
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.25 E-value=54 Score=31.80 Aligned_cols=20 Identities=40% Similarity=0.644 Sum_probs=18.7
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|+++.|+.|++||+|+.++.
T Consensus 76 ~~~~dG~~v~~g~~i~~~~G 95 (288)
T PRK07428 76 PLVAEGAACESGQVVAEIEG 95 (288)
T ss_pred EEcCCCCEecCCCEEEEEEE
Confidence 78999999999999999975
No 269
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=23.96 E-value=55 Score=31.25 Aligned_cols=20 Identities=35% Similarity=0.361 Sum_probs=18.8
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|++++|+.|++||+|+.|+.
T Consensus 60 ~~~~dG~~v~~g~~i~~i~G 79 (272)
T cd01573 60 LAAASGSRVAAGAVLLEAEG 79 (272)
T ss_pred EEcCCCCEecCCCEEEEEEE
Confidence 78999999999999999985
No 270
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.70 E-value=55 Score=32.01 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=18.7
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|+++.|+.|++|++|+.++.
T Consensus 86 ~~~~dG~~v~~G~~i~~~~G 105 (294)
T PRK06978 86 WRYREGDRMTADSTVCELEG 105 (294)
T ss_pred EEcCCCCEeCCCCEEEEEEe
Confidence 88999999999999999975
No 271
>PRK11649 putative peptidase; Provisional
Probab=23.67 E-value=62 Score=33.13 Aligned_cols=19 Identities=26% Similarity=0.550 Sum_probs=17.0
Q ss_pred CCccCCCEEecCCEEEEEE
Q 021721 252 PFVKVGDRVQKGQVLCIIE 270 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIE 270 (308)
..|++||+|++||+|+.+-
T Consensus 365 ~~v~~Gq~V~~Gq~IG~vG 383 (439)
T PRK11649 365 LLVKPGQKVKRGDRIALSG 383 (439)
T ss_pred ccCCCcCEECCCCeEEEEc
Confidence 5599999999999999874
No 272
>PLN02964 phosphatidylserine decarboxylase
Probab=23.17 E-value=58 Score=35.17 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=28.1
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecc
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK 273 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK 273 (308)
..|.+-++|.+.- .+++|+.|++||.++..+=+.
T Consensus 555 v~VGA~~VgsI~~--------~~~~g~~v~KGdE~G~F~fGG 588 (644)
T PLN02964 555 VAIGATMVGSITF--------VKKEGDHVKKGDELGYFSFGG 588 (644)
T ss_pred EEEeeeEeeEEEE--------EecCCCEEccCcEeeeeecCC
Confidence 4678888888874 578899999999999998753
No 273
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=22.78 E-value=85 Score=29.92 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.1
Q ss_pred CeEEEEEecCCCCccCCCCeEEEEc
Q 021721 283 SGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 283 sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
+|.-.++.+++|+.|..|++|++|+
T Consensus 56 ~~l~v~~~~~dG~~v~~g~~i~~i~ 80 (268)
T cd01572 56 PGIEVEWLVKDGDRVEPGQVLATVE 80 (268)
T ss_pred CCeEEEEEeCCCCEecCCCEEEEEE
Confidence 5666779999999999999999985
No 274
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.70 E-value=60 Score=31.61 Aligned_cols=20 Identities=40% Similarity=0.469 Sum_probs=18.7
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|+++.|+.|++||+|+.++.
T Consensus 80 ~~~~dG~~v~~g~~i~~i~G 99 (289)
T PRK07896 80 DRVEDGARVPPGQALLTVTA 99 (289)
T ss_pred EEcCCCCEecCCCEEEEEEE
Confidence 78999999999999999985
No 275
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.66 E-value=60 Score=31.48 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=18.8
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|+++.|+.|++||+|+.++.
T Consensus 74 ~~~~dG~~v~~g~~i~~i~G 93 (281)
T PRK06106 74 RHLPDGAAVAPGDVIATISG 93 (281)
T ss_pred EEeCCCCEEcCCCEEEEEEE
Confidence 88999999999999999975
No 276
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=22.59 E-value=60 Score=32.01 Aligned_cols=20 Identities=25% Similarity=0.142 Sum_probs=18.7
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|+++.|+.|++|++|+.++.
T Consensus 82 ~~~~dG~~v~~G~~i~~v~G 101 (308)
T PLN02716 82 WAAIDGDFVHKGLKFGKVTG 101 (308)
T ss_pred EEeCCCCEecCCCEEEEEEE
Confidence 88999999999999999975
No 277
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=22.51 E-value=1.8e+02 Score=21.02 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeCC--eEEEEEe
Q 021721 139 SQVSSLIKLVDSRDIVELQLKQLD--CELIIRK 169 (308)
Q Consensus 139 ~qI~eLIklld~S~I~ELeLk~~d--~~L~LrK 169 (308)
...+.+.+++++.+..-+.+++.+ ++|.|+|
T Consensus 37 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~i~i~k 69 (69)
T cd00291 37 GAVEDIPAWAKETGHEVLEVEEEGGVYRILIRK 69 (69)
T ss_pred cHHHHHHHHHHHcCCEEEEEEEeCCEEEEEEEC
Confidence 346667778888888877766654 7777654
No 278
>COG0261 RplU Ribosomal protein L21 [Translation, ribosomal structure and biogenesis]
Probab=22.44 E-value=1.2e+02 Score=25.56 Aligned_cols=15 Identities=13% Similarity=0.370 Sum_probs=8.8
Q ss_pred ecCCCCccCCCCeEE
Q 021721 290 IAEDRKPVSVDTPLF 304 (308)
Q Consensus 290 lVe~Gd~V~~GqpL~ 304 (308)
++.+|+.|..|.|..
T Consensus 40 ~v~~~~~v~iG~P~v 54 (103)
T COG0261 40 MVGGGEEVKIGAPYV 54 (103)
T ss_pred EEcCCCceEECCcee
Confidence 355566666666654
No 279
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=22.36 E-value=61 Score=31.75 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=18.8
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|+++.|+.|++||+|+.++.
T Consensus 89 ~~~~dG~~v~~G~~i~~i~G 108 (296)
T PRK09016 89 WHVDDGDVITANQTLFELTG 108 (296)
T ss_pred EEcCCCCEecCCCEEEEEEE
Confidence 78999999999999999985
No 280
>PF06670 Etmic-2: Microneme protein Etmic-2; InterPro: IPR009556 This family consists of several Microneme protein Etmic-2 sequences from Eimeria tenella. Etmic-2 is a 50 kDa acidic protein, which is found within the microneme organelles of E. tenella sporozoites and merozoites [].
Probab=22.07 E-value=39 Score=32.94 Aligned_cols=33 Identities=33% Similarity=0.504 Sum_probs=24.4
Q ss_pred eEeeecc----ccccccccchhhh-----------hcchhhhcccccC
Q 021721 59 VVKSQLN----EVSFFQWFSFEDI-----------FSNFRSFLDSLLG 91 (308)
Q Consensus 59 ~~~~~~~----~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 91 (308)
++-.|-| |||.|-|++-|-| ||.|||+..+.-.
T Consensus 209 v~i~q~~p~e~~vr~~~wi~teylcsrrgvsrifkysdfcslcrdas~ 256 (379)
T PF06670_consen 209 VLITQQNPKEVEVRVLAWISTEYLCSRRGVSRIFKYSDFCSLCRDAST 256 (379)
T ss_pred EEEecCCCceEEEEEEEeecchhhhcccccchhhcccchhhhhccccC
Confidence 3444544 7999999999876 5789999876543
No 281
>PF06572 DUF1131: Protein of unknown function (DUF1131); InterPro: IPR010938 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2QZB_B.
Probab=22.06 E-value=93 Score=28.37 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=31.8
Q ss_pred ccCCCEEecCCEEEEEEecc---eeeEEecCCCeEEEEEecCCCCcc
Q 021721 254 VKVGDRVQKGQVLCIIEAMK---LMNEIEADRSGTIVEIIAEDRKPV 297 (308)
Q Consensus 254 VkvGD~VkkGqvL~iIEamK---~~~eI~Ap~sGvV~eilVe~Gd~V 297 (308)
++.|-+-..|+++-++|+|| +.++|.-+-.|+|.+|.|.+.+..
T Consensus 49 lrsGm~t~nG~~v~~~qA~~~d~v~lvI~G~~~G~V~rI~V~d~~i~ 95 (171)
T PF06572_consen 49 LRSGMQTANGNIVSFFQAMKDDQVKLVISGDPKGTVSRIEVMDPDIK 95 (171)
T ss_dssp EEEEEEEETTEEEEEEEEEETTEEEEEEEE----BEEEEEE--TTS-
T ss_pred EecceecCCCCeEEeeeeecCCeEEEEEecCCCCcEEEEEEeccccC
Confidence 47788899999999999876 677788777999999999988874
No 282
>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]
Probab=21.68 E-value=96 Score=29.34 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=41.6
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEe--------cCC-EEEEEEecc---eeeEEecCCCeEEEEEecCCCCccC
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQ--------KGQ-VLCIIEAMK---LMNEIEADRSGTIVEIIAEDRKPVS 298 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~Vk--------kGq-vL~iIEamK---~~~eI~Ap~sGvV~eilVe~Gd~V~ 298 (308)
....++|..|++.. .....|+... +.+ .++.|++.. .+.+|-+-..|.|+ ...+.|+.|.
T Consensus 124 yHr~haP~~G~i~~-------~~~~~G~~~~v~~~~~~~~NER~~~~i~t~~g~v~~v~Vga~~v~~Iv-~~~~~~~~v~ 195 (239)
T COG0688 124 YHRNHAPVDGTIIE-------VRYVPGKFFSANLDKAFTENERNSVLIETEQGKVVVVQVAGLVARRIV-CYVKEGDTVK 195 (239)
T ss_pred eeeEeCCCCCEEEE-------EEEECCceeccChhhhhcccceEEEEEEcCCCcEEEEEEhhheeeEEE-EEecCCcEEE
Confidence 34678888888766 3333444322 222 456676654 45566677778887 4455588888
Q ss_pred CCCeEEEE
Q 021721 299 VDTPLFVI 306 (308)
Q Consensus 299 ~GqpL~~I 306 (308)
+|+.+..+
T Consensus 196 ~G~~~G~~ 203 (239)
T COG0688 196 KGERIGGI 203 (239)
T ss_pred hhhhhhhh
Confidence 88766543
No 283
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=21.65 E-value=2.3e+02 Score=21.70 Aligned_cols=60 Identities=23% Similarity=0.330 Sum_probs=34.5
Q ss_pred cCeEEEcCCCCCCCCCccCCCEEec--CCEEEEEEeccee-eEEecCCCeEEEEEecCCCCccCCCCeEE
Q 021721 238 MAGTFYRSPAPGEPPFVKVGDRVQK--GQVLCIIEAMKLM-NEIEADRSGTIVEIIAEDRKPVSVDTPLF 304 (308)
Q Consensus 238 m~Gt~~r~p~p~~~~~VkvGD~Vkk--GqvL~iIEamK~~-~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~ 304 (308)
..|++.. =.+++||+|.- ....+.|....+. .++..-..|--..+.+.+.+.|..|+.|+
T Consensus 18 v~Gkv~~-------G~v~~Gd~v~~~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~~~~~i~~G~vl~ 80 (81)
T cd03695 18 YAGTIAS-------GSIRVGDEVVVLPSGKTSRVKSIETFDGELDEAGAGESVTLTLEDEIDVSRGDVIV 80 (81)
T ss_pred EEEEEcc-------ceEECCCEEEEcCCCCeEEEEEEEECCcEeCEEcCCCEEEEEECCccccCCCCEEe
Confidence 6677776 56777777632 2222333332211 22333445766677777667788898875
No 284
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.46 E-value=66 Score=31.10 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=18.7
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|+++.|+.|++||+|+.++.
T Consensus 62 ~~~~dG~~v~~g~~i~~i~G 81 (278)
T PRK08385 62 VRKRDGEEVKAGEVILELKG 81 (278)
T ss_pred EEcCCCCEecCCCEEEEEEE
Confidence 78999999999999999985
No 285
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=21.35 E-value=82 Score=32.57 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=18.1
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
.+++.||.|++||+|+.|=+
T Consensus 381 l~kk~ge~Vk~Gd~l~tiya 400 (435)
T COG0213 381 LHKKLGEKVKKGDPLATIYA 400 (435)
T ss_pred EEecCCCeeccCCeEEEEec
Confidence 56899999999999999976
No 286
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=21.22 E-value=1e+02 Score=22.60 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhCCCcEEEE--EeCCeEEEEEe
Q 021721 140 QVSSLIKLVDSRDIVELQL--KQLDCELIIRK 169 (308)
Q Consensus 140 qI~eLIklld~S~I~ELeL--k~~d~~L~LrK 169 (308)
..+.|.+++++.+..-+++ .++.++|.|+|
T Consensus 39 ~~~di~~~~~~~g~~~~~~~~~~~~~~i~I~K 70 (70)
T PF01206_consen 39 AVEDIPRWCEENGYEVVEVEEEGGEYRILIRK 70 (70)
T ss_dssp HHHHHHHHHHHHTEEEEEEEESSSSEEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCEEEEEEEC
Confidence 3455555666677665666 55678888876
No 287
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=20.35 E-value=71 Score=30.87 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=18.7
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|+++.|+.|++|++|+.++.
T Consensus 64 ~~~~dG~~v~~g~~i~~~~G 83 (277)
T TIGR01334 64 YAVPSGSRALAGTLLLEAKG 83 (277)
T ss_pred EEeCCCCEeCCCCEEEEEEe
Confidence 78999999999999999975
No 288
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=20.33 E-value=1.2e+02 Score=28.08 Aligned_cols=31 Identities=16% Similarity=-0.051 Sum_probs=26.6
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeE--EEE
Q 021721 275 MNEIEADRSGTIVEIIAEDRKPVSVDTPL--FVI 306 (308)
Q Consensus 275 ~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL--~~I 306 (308)
...+.|+.+|.+. -.++.|+.|..|++| ..+
T Consensus 220 ~~~~~a~~~G~~~-~~~~~g~~v~~G~~l~~~~~ 252 (292)
T PF04952_consen 220 PEWVRAPAGGLFE-PEVKLGDDVEKGDLLGRGEI 252 (292)
T ss_dssp CCEEESSSSEEEE-ETSSTTTTETTTCEEETEEE
T ss_pred ceeecCCccEEEE-EeecCCCceECCcccCCeee
Confidence 4678999999875 889999999999999 544
No 289
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=20.32 E-value=72 Score=30.39 Aligned_cols=20 Identities=45% Similarity=0.662 Sum_probs=18.7
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|+++.|+.|++||+|+.|+.
T Consensus 58 ~~~~dG~~v~~g~~i~~i~G 77 (265)
T TIGR00078 58 WLVKDGDRVEPGEVVAEVEG 77 (265)
T ss_pred EEeCCCCEecCCCEEEEEEE
Confidence 78999999999999999985
No 290
>PRK06148 hypothetical protein; Provisional
Probab=20.24 E-value=57 Score=36.66 Aligned_cols=18 Identities=28% Similarity=0.577 Sum_probs=14.8
Q ss_pred ccCCCEEecCCEEEEEEe
Q 021721 254 VKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 254 VkvGD~VkkGqvL~iIEa 271 (308)
+++||.|++||.||.+-.
T Consensus 505 ~~~G~~v~~G~~ig~~G~ 522 (1013)
T PRK06148 505 LKPGDRLAAGELFGAMGD 522 (1013)
T ss_pred CCCCCcccccchhhhccC
Confidence 689999999999997743
Done!