Query 021721
Match_columns 308
No_of_seqs 266 out of 2143
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 08:19:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021721.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021721hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bdo_A Acetyl-COA carboxylase; 99.7 1E-16 3.5E-21 121.7 10.0 76 232-307 5-80 (80)
2 2kcc_A Acetyl-COA carboxylase 99.6 1.6E-15 5.6E-20 117.2 7.3 69 232-308 6-74 (84)
3 1z6h_A Biotin/lipoyl attachmen 99.6 3.7E-15 1.3E-19 110.1 8.8 69 233-308 1-69 (72)
4 1ghj_A E2, E2, the dihydrolipo 99.6 1.3E-14 4.3E-19 110.1 9.0 66 236-308 12-77 (79)
5 1dcz_A Transcarboxylase 1.3S s 99.5 2E-14 6.9E-19 107.7 9.4 70 231-307 8-77 (77)
6 2dn8_A Acetyl-COA carboxylase 99.5 1.4E-14 4.9E-19 115.2 8.9 69 232-308 18-86 (100)
7 3crk_C Dihydrolipoyllysine-res 99.5 1.2E-14 4E-19 112.8 8.2 64 237-307 17-81 (87)
8 2d5d_A Methylmalonyl-COA decar 99.5 2.4E-14 8.2E-19 105.9 8.9 69 232-307 6-74 (74)
9 1k8m_A E2 component of branche 99.5 2.2E-14 7.4E-19 113.3 7.3 64 238-308 17-80 (93)
10 2l5t_A Lipoamide acyltransfera 99.5 2.6E-14 8.8E-19 107.7 7.4 66 235-307 11-76 (77)
11 3n6r_A Propionyl-COA carboxyla 99.5 2.7E-14 9.2E-19 147.1 9.6 70 231-307 612-681 (681)
12 2dnc_A Pyruvate dehydrogenase 99.5 2.7E-14 9.1E-19 114.1 7.3 63 238-307 20-83 (98)
13 2dne_A Dihydrolipoyllysine-res 99.5 4.6E-14 1.6E-18 114.7 8.1 63 238-307 20-83 (108)
14 2jku_A Propionyl-COA carboxyla 99.5 9.2E-15 3.1E-19 115.4 2.8 70 231-307 25-94 (94)
15 2k7v_A Dihydrolipoyllysine-res 99.5 7.7E-15 2.6E-19 113.2 2.2 68 233-307 4-71 (85)
16 2ejm_A Methylcrotonoyl-COA car 99.5 1E-13 3.5E-18 110.2 8.3 70 231-307 14-83 (99)
17 1qjo_A Dihydrolipoamide acetyl 99.5 9.9E-14 3.4E-18 105.0 7.7 63 239-308 14-76 (80)
18 1gjx_A Pyruvate dehydrogenase; 99.5 2.6E-14 9E-19 108.6 3.7 69 233-308 9-77 (81)
19 3va7_A KLLA0E08119P; carboxyla 99.5 1.2E-13 4E-18 150.7 10.0 71 229-306 1165-1235(1236)
20 1y8o_B Dihydrolipoyllysine-res 99.4 1.4E-13 4.8E-18 115.7 8.2 63 238-307 40-103 (128)
21 3hbl_A Pyruvate carboxylase; T 99.4 1.8E-13 6.2E-18 148.3 9.9 73 229-308 1075-1147(1150)
22 1iyu_A E2P, dihydrolipoamide a 99.4 2.9E-13 9.9E-18 102.5 6.7 61 241-308 14-74 (79)
23 1pmr_A Dihydrolipoyl succinylt 99.4 1.2E-14 4.3E-19 110.7 -1.0 65 237-308 14-78 (80)
24 3u9t_A MCC alpha, methylcroton 99.4 3E-14 1E-18 146.5 0.1 70 232-308 603-672 (675)
25 3bg3_A Pyruvate carboxylase, m 99.2 2.3E-12 7.8E-17 134.1 3.1 70 231-307 649-718 (718)
26 2qf7_A Pyruvate carboxylase pr 99.2 6.4E-12 2.2E-16 136.4 5.6 70 231-307 1095-1164(1165)
27 1zko_A Glycine cleavage system 99.2 4.6E-12 1.6E-16 107.6 3.4 69 233-308 38-114 (136)
28 3dva_I Dihydrolipoyllysine-res 99.2 2.8E-12 9.7E-17 126.1 0.0 62 239-307 16-77 (428)
29 1zy8_K Pyruvate dehydrogenase 99.1 4.7E-12 1.6E-16 115.5 0.0 62 239-307 17-79 (229)
30 2k32_A A; NMR {Campylobacter j 99.1 6.6E-11 2.3E-15 95.2 5.4 68 233-307 3-100 (116)
31 1onl_A Glycine cleavage system 98.8 2.3E-09 8E-14 90.0 4.1 69 234-308 30-105 (128)
32 1hpc_A H protein of the glycin 98.8 2.1E-09 7.3E-14 90.6 3.8 68 234-308 30-105 (131)
33 3a7l_A H-protein, glycine clea 98.8 3E-09 1E-13 89.3 4.3 69 234-308 31-106 (128)
34 3lnn_A Membrane fusion protein 98.5 2.3E-07 8E-12 86.4 7.6 71 230-307 56-203 (359)
35 3ne5_B Cation efflux system pr 98.4 4.8E-07 1.6E-11 87.4 7.6 70 231-307 121-239 (413)
36 3fpp_A Macrolide-specific effl 98.4 3.5E-07 1.2E-11 84.6 5.9 71 230-307 30-188 (341)
37 2f1m_A Acriflavine resistance 98.4 9.7E-08 3.3E-12 86.0 2.1 69 232-307 23-164 (277)
38 1vf7_A Multidrug resistance pr 98.2 5.5E-07 1.9E-11 85.2 3.5 71 230-307 42-171 (369)
39 3klr_A Glycine cleavage system 98.1 4.5E-06 1.5E-10 70.0 5.8 54 254-307 40-100 (125)
40 4dk0_A Putative MACA; alpha-ha 98.0 4.2E-07 1.5E-11 84.8 -2.4 70 230-306 31-188 (369)
41 3mxu_A Glycine cleavage system 97.9 1.8E-05 6.2E-10 67.8 7.1 55 254-308 62-123 (143)
42 3na6_A Succinylglutamate desuc 97.9 3.4E-05 1.2E-09 73.0 9.1 68 230-307 256-327 (331)
43 3tzu_A GCVH, glycine cleavage 97.8 2E-05 7E-10 67.0 5.2 54 254-307 57-117 (137)
44 3cdx_A Succinylglutamatedesucc 97.7 6.5E-05 2.2E-09 71.5 8.4 67 231-307 267-337 (354)
45 3fmc_A Putative succinylglutam 97.7 7.2E-05 2.4E-09 72.0 7.5 67 231-307 290-362 (368)
46 1ax3_A Iiaglc, glucose permeas 97.5 0.00014 4.7E-09 63.3 5.9 65 232-307 13-116 (162)
47 3hgb_A Glycine cleavage system 97.5 0.00015 5.2E-09 62.9 5.9 55 254-308 67-128 (155)
48 2dn8_A Acetyl-COA carboxylase 97.4 4.1E-05 1.4E-09 60.3 1.9 45 263-307 5-49 (100)
49 2gpr_A Glucose-permease IIA co 97.3 0.00024 8.3E-09 61.2 5.9 65 232-307 8-111 (154)
50 1f3z_A EIIA-GLC, glucose-speci 97.3 0.00022 7.6E-09 62.0 5.6 65 232-307 13-116 (161)
51 2qj8_A MLR6093 protein; struct 96.9 0.0024 8E-08 60.0 8.1 66 232-307 258-327 (332)
52 1z6h_A Biotin/lipoyl attachmen 96.8 0.001 3.4E-08 48.3 4.0 31 277-307 1-31 (72)
53 2d5d_A Methylmalonyl-COA decar 96.7 0.0015 5.3E-08 47.3 4.3 32 276-307 6-37 (74)
54 1dcz_A Transcarboxylase 1.3S s 96.6 0.0017 5.7E-08 47.8 3.9 33 275-307 8-40 (77)
55 2kcc_A Acetyl-COA carboxylase 96.4 0.0016 5.5E-08 49.6 2.7 32 276-307 6-37 (84)
56 2jku_A Propionyl-COA carboxyla 95.9 0.0047 1.6E-07 48.0 3.2 33 275-307 25-57 (94)
57 2l5t_A Lipoamide acyltransfera 95.8 0.0074 2.5E-07 44.5 3.9 33 232-271 45-77 (77)
58 3fpp_A Macrolide-specific effl 95.8 0.0088 3E-07 55.0 5.2 54 254-308 11-64 (341)
59 2ejm_A Methylcrotonoyl-COA car 95.8 0.0054 1.8E-07 48.0 3.1 33 275-307 14-46 (99)
60 2xha_A NUSG, transcription ant 95.8 0.0082 2.8E-07 53.7 4.6 51 248-304 19-98 (193)
61 3lnn_A Membrane fusion protein 95.7 0.0059 2E-07 56.6 3.7 55 254-308 35-90 (359)
62 1bdo_A Acetyl-COA carboxylase; 95.5 0.007 2.4E-07 45.0 2.7 32 276-307 5-43 (80)
63 1qjo_A Dihydrolipoamide acetyl 95.4 0.0087 3E-07 44.4 2.9 34 231-271 43-76 (80)
64 1vf7_A Multidrug resistance pr 95.1 0.013 4.5E-07 55.1 3.8 44 264-308 33-76 (369)
65 1iyu_A E2P, dihydrolipoamide a 95.0 0.017 5.9E-07 42.8 3.4 34 232-272 42-75 (79)
66 2xhc_A Transcription antitermi 94.8 0.025 8.5E-07 54.5 4.9 50 249-304 60-138 (352)
67 1ghj_A E2, E2, the dihydrolipo 94.7 0.018 6E-07 42.7 2.9 33 232-271 45-77 (79)
68 4dk0_A Putative MACA; alpha-ha 94.7 0.014 4.6E-07 54.2 2.7 55 253-308 11-65 (369)
69 1gjx_A Pyruvate dehydrogenase; 94.6 0.025 8.7E-07 42.0 3.6 30 278-307 10-39 (81)
70 3crk_C Dihydrolipoyllysine-res 94.6 0.038 1.3E-06 42.0 4.6 27 281-307 17-43 (87)
71 1k8m_A E2 component of branche 94.6 0.035 1.2E-06 43.1 4.3 27 281-307 16-42 (93)
72 2dne_A Dihydrolipoyllysine-res 94.4 0.03 1E-06 44.9 3.7 34 274-307 6-45 (108)
73 3ne5_B Cation efflux system pr 94.3 0.04 1.4E-06 52.9 5.0 54 254-307 99-154 (413)
74 2k7v_A Dihydrolipoyllysine-res 94.1 0.016 5.4E-07 43.8 1.4 35 231-272 39-73 (85)
75 2gpr_A Glucose-permease IIA co 94.0 0.026 8.9E-07 48.5 2.7 73 232-307 45-154 (154)
76 1pmr_A Dihydrolipoyl succinylt 93.9 0.02 6.9E-07 42.7 1.7 34 231-271 45-78 (80)
77 3d4r_A Domain of unknown funct 93.7 0.07 2.4E-06 46.8 4.8 39 252-290 114-153 (169)
78 2auk_A DNA-directed RNA polyme 93.4 0.083 2.8E-06 46.6 4.9 48 247-296 59-106 (190)
79 2dnc_A Pyruvate dehydrogenase 93.2 0.064 2.2E-06 42.1 3.5 35 232-273 51-86 (98)
80 1y8o_B Dihydrolipoyllysine-res 93.1 0.089 3E-06 43.7 4.5 26 282-307 40-65 (128)
81 2xha_A NUSG, transcription ant 93.1 0.028 9.7E-07 50.2 1.5 51 248-304 77-157 (193)
82 3our_B EIIA, phosphotransferas 93.1 0.1 3.6E-06 46.2 5.1 65 232-307 35-138 (183)
83 1ax3_A Iiaglc, glucose permeas 92.1 0.089 3E-06 45.6 3.2 40 232-271 50-117 (162)
84 3n6r_A Propionyl-COA carboxyla 92.0 0.11 3.8E-06 53.5 4.4 33 275-307 612-644 (681)
85 2k32_A A; NMR {Campylobacter j 91.5 0.11 3.7E-06 41.0 2.9 34 232-272 68-102 (116)
86 1f3z_A EIIA-GLC, glucose-speci 91.5 0.19 6.4E-06 43.5 4.6 40 232-271 50-117 (161)
87 2bco_A Succinylglutamate desuc 89.9 0.26 8.8E-06 46.8 4.4 62 233-306 265-326 (350)
88 3bg3_A Pyruvate carboxylase, m 89.2 0.23 7.9E-06 51.9 3.8 32 276-307 650-681 (718)
89 3lu0_D DNA-directed RNA polyme 89.2 0.26 8.7E-06 54.9 4.2 37 249-287 1000-1036(1407)
90 3hbl_A Pyruvate carboxylase; T 88.3 0.32 1.1E-05 53.2 4.3 32 276-307 1078-1109(1150)
91 3our_B EIIA, phosphotransferas 88.2 0.51 1.7E-05 41.8 4.8 20 252-271 120-139 (183)
92 3va7_A KLLA0E08119P; carboxyla 87.7 0.37 1.3E-05 53.1 4.3 32 276-307 1168-1199(1236)
93 3u9t_A MCC alpha, methylcroton 87.5 0.11 3.7E-06 53.5 0.0 32 276-307 603-634 (675)
94 2xhc_A Transcription antitermi 87.1 0.13 4.5E-06 49.5 0.3 50 249-304 118-197 (352)
95 2qf7_A Pyruvate carboxylase pr 85.8 0.54 1.8E-05 51.4 4.3 32 276-307 1096-1127(1165)
96 2f1m_A Acriflavine resistance 84.6 0.56 1.9E-05 41.6 3.2 33 232-271 131-165 (277)
97 3dva_I Dihydrolipoyllysine-res 80.4 0.33 1.1E-05 47.5 0.0 35 232-273 46-80 (428)
98 1zy8_K Pyruvate dehydrogenase 77.6 0.46 1.6E-05 42.9 0.0 33 232-271 47-80 (229)
99 3lu0_D DNA-directed RNA polyme 74.2 1.3 4.5E-05 49.4 2.4 22 248-269 1103-1124(1407)
100 3fmc_A Putative succinylglutam 72.0 3.2 0.00011 39.6 4.2 32 275-307 290-321 (368)
101 3na6_A Succinylglutamate desuc 64.3 5.1 0.00017 37.5 3.9 32 275-307 257-288 (331)
102 1uou_A Thymidine phosphorylase 64.0 7.1 0.00024 38.9 5.0 39 269-307 366-433 (474)
103 3it5_A Protease LASA; metallop 61.7 4.8 0.00016 34.9 2.9 20 252-271 85-104 (182)
104 3cdx_A Succinylglutamatedesucc 59.4 8.5 0.00029 36.1 4.4 34 273-307 265-298 (354)
105 1brw_A PYNP, protein (pyrimidi 58.6 9.6 0.00033 37.5 4.8 20 288-307 379-398 (433)
106 2dsj_A Pyrimidine-nucleoside ( 55.0 11 0.00038 37.0 4.5 20 288-307 371-390 (423)
107 3csq_A Morphogenesis protein 1 51.0 7.3 0.00025 36.5 2.5 20 251-270 250-269 (334)
108 1yw4_A Succinylglutamate desuc 50.8 2.5 8.7E-05 39.7 -0.7 36 252-287 277-317 (341)
109 2tpt_A Thymidine phosphorylase 50.4 8.6 0.00029 37.9 2.9 38 270-307 335-403 (440)
110 3tuf_B Stage II sporulation pr 49.3 7.3 0.00025 35.5 2.1 21 252-272 135-155 (245)
111 3vr4_A V-type sodium ATPase ca 48.0 28 0.00095 35.8 6.3 51 253-306 130-183 (600)
112 3nyy_A Putative glycyl-glycine 46.5 9.1 0.00031 34.9 2.3 19 253-271 183-201 (252)
113 3h5q_A PYNP, pyrimidine-nucleo 46.4 20 0.0007 35.3 4.9 19 289-307 383-401 (436)
114 2hsi_A Putative peptidase M23; 44.6 9.3 0.00032 35.4 2.1 20 252-271 232-251 (282)
115 1zko_A Glycine cleavage system 44.4 12 0.00041 31.1 2.5 32 276-307 37-69 (136)
116 2qj8_A MLR6093 protein; struct 42.9 19 0.00066 33.2 3.9 31 276-307 258-288 (332)
117 1qwy_A Peptidoglycan hydrolase 42.1 11 0.00037 35.4 2.1 20 252-271 239-258 (291)
118 1hpc_A H protein of the glycin 41.7 13 0.00045 30.7 2.3 32 276-307 28-60 (131)
119 2auk_A DNA-directed RNA polyme 41.0 14 0.00048 32.2 2.5 24 247-270 163-186 (190)
120 2hsi_A Putative peptidase M23; 40.9 22 0.00074 32.9 3.9 20 287-306 230-249 (282)
121 3h5q_A PYNP, pyrimidine-nucleo 40.3 10 0.00035 37.4 1.7 19 252-270 383-401 (436)
122 2ktr_A Sequestosome-1; autopha 39.5 14 0.00047 30.4 2.1 44 56-99 19-83 (117)
123 3tuf_B Stage II sporulation pr 39.2 26 0.00091 31.8 4.1 59 233-307 95-153 (245)
124 1brw_A PYNP, protein (pyrimidi 37.9 28 0.00096 34.2 4.4 42 232-273 336-401 (433)
125 2gu1_A Zinc peptidase; alpha/b 37.8 14 0.00047 34.9 2.1 20 252-271 284-303 (361)
126 2dsj_A Pyrimidine-nucleoside ( 37.7 29 0.00098 34.1 4.4 22 252-273 372-393 (423)
127 2kkc_A Sequestosome-1; P62, PB 36.9 15 0.00051 29.4 1.9 43 57-99 5-68 (102)
128 1onl_A Glycine cleavage system 36.8 19 0.00065 29.5 2.5 32 276-307 28-60 (128)
129 1x1o_A Nicotinate-nucleotide p 36.3 18 0.00061 33.5 2.6 20 252-271 76-95 (286)
130 3a7l_A H-protein, glycine clea 36.1 20 0.00068 29.4 2.5 32 276-307 29-61 (128)
131 1o4u_A Type II quinolic acid p 36.0 17 0.00058 33.7 2.4 20 252-271 75-94 (285)
132 1uou_A Thymidine phosphorylase 35.1 33 0.0011 34.2 4.4 42 232-273 373-436 (474)
133 2lmc_B DNA-directed RNA polyme 34.6 12 0.00041 29.0 0.9 21 247-267 62-82 (84)
134 1qpo_A Quinolinate acid phosph 34.3 18 0.00062 33.5 2.3 20 252-271 75-94 (284)
135 3d4r_A Domain of unknown funct 33.8 30 0.001 30.2 3.4 41 256-307 92-132 (169)
136 3tqv_A Nicotinate-nucleotide p 33.6 21 0.00072 33.3 2.6 20 252-271 79-98 (287)
137 2tpt_A Thymidine phosphorylase 33.0 15 0.0005 36.3 1.4 42 232-273 341-406 (440)
138 3l0g_A Nicotinate-nucleotide p 32.0 23 0.00078 33.4 2.5 20 252-271 88-107 (300)
139 3it5_A Protease LASA; metallop 30.0 35 0.0012 29.4 3.2 55 232-307 49-103 (182)
140 3gnn_A Nicotinate-nucleotide p 29.1 29 0.00099 32.6 2.7 20 252-271 90-109 (298)
141 2b7n_A Probable nicotinate-nuc 28.4 28 0.00095 31.7 2.4 20 252-271 62-81 (273)
142 3paj_A Nicotinate-nucleotide p 28.2 30 0.001 32.7 2.7 20 252-271 112-131 (320)
143 1qap_A Quinolinic acid phospho 28.0 31 0.0011 32.0 2.7 20 252-271 89-108 (296)
144 3nyy_A Putative glycyl-glycine 27.8 48 0.0016 30.0 3.9 58 233-306 141-199 (252)
145 2jbm_A Nicotinate-nucleotide p 25.3 33 0.0011 31.8 2.3 20 252-271 75-94 (299)
146 2qzb_A Uncharacterized protein 25.0 46 0.0016 28.9 3.0 53 233-296 34-89 (166)
147 3gqb_A V-type ATP synthase alp 23.7 1.1E+02 0.0037 31.4 5.9 37 253-289 122-160 (578)
148 1qwy_A Peptidoglycan hydrolase 23.6 72 0.0025 29.8 4.3 20 287-306 237-256 (291)
149 3csq_A Morphogenesis protein 1 23.6 68 0.0023 29.9 4.2 19 288-306 250-268 (334)
150 3mfy_A V-type ATP synthase alp 21.9 1.1E+02 0.0039 31.3 5.6 37 253-289 123-162 (588)
151 2gu1_A Zinc peptidase; alpha/b 20.4 1.1E+02 0.0037 28.7 4.9 20 287-306 282-301 (361)
No 1
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.69 E-value=1e-16 Score=121.72 Aligned_cols=76 Identities=53% Similarity=0.976 Sum_probs=73.2
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|++|+.|++++.+.+...|++++||.|++||+|+.||+||+..+|+||++|+|.++++++|+.|..|++|++|+
T Consensus 5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 3699999999999888999999999999999999999999999999999999999999999999999999999985
No 2
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=117.24 Aligned_cols=69 Identities=20% Similarity=0.294 Sum_probs=66.3
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
..|+||+.|++++ |+|++||.|++||+|+.||+||+.++|+||++|+|.+++ +.|+.|..|++|++|.+
T Consensus 6 ~~v~a~~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~ 74 (84)
T 2kcc_A 6 TVLRSPSAGKLTQ-------YTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLEL 74 (84)
T ss_dssp TEECCSSSCCEEE-------ESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEEC
T ss_pred ceEECCCCEEEEE-------EECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeC
Confidence 4699999999999 999999999999999999999999999999999999999 99999999999999863
No 3
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.59 E-value=3.7e-15 Score=110.13 Aligned_cols=69 Identities=33% Similarity=0.529 Sum_probs=66.1
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 233 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 233 ~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
.|+||+.|++.+ |++++||.|++||+|+.||++|+..+|+||++|+|.++++++|+.|..|++|++|.+
T Consensus 1 ~v~a~~~G~v~~-------~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 69 (72)
T 1z6h_A 1 TVSIQMAGNLWK-------VHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN 69 (72)
T ss_dssp CEECCSSEEEEE-------ECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGG
T ss_pred CEECcccEEEEE-------EEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeC
Confidence 378999999999 999999999999999999999999999999999999999999999999999999863
No 4
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.55 E-value=1.3e-14 Score=110.06 Aligned_cols=66 Identities=24% Similarity=0.288 Sum_probs=63.0
Q ss_pred CCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 236 CPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 236 APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
+++.|++.+ |+|++||.|++||+|+.||+||+..+|+||++|+|.++++++|+.|..|++|++|.+
T Consensus 12 ~~~~G~i~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 12 SIADGTVAT-------WHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp SCSCEEECC-------CSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred CCCCEEEEE-------EEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 457899998 999999999999999999999999999999999999999999999999999999864
No 5
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.55 E-value=2e-14 Score=107.66 Aligned_cols=70 Identities=33% Similarity=0.529 Sum_probs=67.3
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
...|.+|+.|++.+ |++++||.|++||+|+.|+.+|+..+|+||++|+|.+++++.|+.|..|++|++|+
T Consensus 8 ~~~v~a~~~G~v~~-------~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 8 EGEIPAPLAGTVSK-------ILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp SSEEEBSSSCEEEE-------ECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CeEEECCCCEEEEE-------EEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 45799999999998 99999999999999999999999999999999999999999999999999999985
No 6
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=115.16 Aligned_cols=69 Identities=20% Similarity=0.312 Sum_probs=66.3
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
..|.+|+.|++.+ |+|++||.|++||+|+.||+||+..+|+||++|+|. +++++|+.|..|++|++|.+
T Consensus 18 ~~v~a~~~G~v~~-------~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~ 86 (100)
T 2dn8_A 18 TVLRSPSAGKLTQ-------YTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLEL 86 (100)
T ss_dssp TEEECSSCEEEEE-------ESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECC
T ss_pred cEEeCCCCEEEEE-------EEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEc
Confidence 4799999999999 999999999999999999999999999999999999 99999999999999999863
No 7
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.54 E-value=1.2e-14 Score=112.82 Aligned_cols=64 Identities=28% Similarity=0.400 Sum_probs=61.6
Q ss_pred CcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCC-ccCCCCeEEEEc
Q 021721 237 PMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK-PVSVDTPLFVIE 307 (308)
Q Consensus 237 Pm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd-~V~~GqpL~~Ie 307 (308)
...|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|++|++|+
T Consensus 17 ~~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~ 81 (87)
T 3crk_C 17 MTMGTVQR-------WEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV 81 (87)
T ss_dssp CCEEEEEE-------ECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEE
T ss_pred CCcEEEEE-------EEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEE
Confidence 46799999 99999999999999999999999999999999999999999999 899999999986
No 8
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.54 E-value=2.4e-14 Score=105.88 Aligned_cols=69 Identities=38% Similarity=0.647 Sum_probs=66.5
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|.+|+.|++.+ |++++||.|++||+|+.|+++++..+|+||++|+|.+++++.|+.|..|++|++|+
T Consensus 6 ~~v~a~~~G~v~~-------~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 6 NVVSAPMPGKVLR-------VLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp CEEECSSCEEEEE-------ECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred eEEecCCCEEEEE-------EEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 4689999999998 99999999999999999999999999999999999999999999999999999985
No 9
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.51 E-value=2.2e-14 Score=113.34 Aligned_cols=64 Identities=25% Similarity=0.265 Sum_probs=61.7
Q ss_pred cCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 238 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 238 m~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
..|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|++|++
T Consensus 17 ~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~ 80 (93)
T 1k8m_A 17 REVTVKE-------WYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET 80 (93)
T ss_dssp CCEEEEE-------ECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred CCEEEEE-------EEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEec
Confidence 6799999 999999999999999999999999999999999999999999999999999999863
No 10
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.51 E-value=2.6e-14 Score=107.66 Aligned_cols=66 Identities=30% Similarity=0.344 Sum_probs=63.2
Q ss_pred cCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 235 KCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 235 ~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.+++.|++.+ |+|++||.|++||+|+.||++|+..+|+||++|+|.++++++|+.|..|++|++|+
T Consensus 11 ~~~~~G~v~~-------~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 11 EGVTEGEIVR-------WDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp SSCCCEEEEE-------CSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred CCCccEEEEE-------EEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 3568899999 99999999999999999999999999999999999999999999999999999986
No 11
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.51 E-value=2.7e-14 Score=147.06 Aligned_cols=70 Identities=39% Similarity=0.625 Sum_probs=67.8
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
...|+|||+|++++ |+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 612 ~~~v~ap~~G~v~~-------~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 612 SKMLLCPMPGLIVK-------VDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp CSEEECCSCEEEEE-------ECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCeEECCCcEEEEE-------EEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 45799999999999 99999999999999999999999999999999999999999999999999999985
No 12
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.7e-14 Score=114.08 Aligned_cols=63 Identities=24% Similarity=0.393 Sum_probs=61.0
Q ss_pred cCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCcc-CCCCeEEEEc
Q 021721 238 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPV-SVDTPLFVIE 307 (308)
Q Consensus 238 m~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V-~~GqpL~~Ie 307 (308)
..|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.| ..|++|++|+
T Consensus 20 ~~G~i~~-------~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~ 83 (98)
T 2dnc_A 20 EEGNIVK-------WLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIV 83 (98)
T ss_dssp SEECEEE-------ESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEE
T ss_pred ccEEEEE-------EEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEe
Confidence 5789999 9999999999999999999999999999999999999999999999 9999999986
No 13
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.49 E-value=4.6e-14 Score=114.75 Aligned_cols=63 Identities=21% Similarity=0.288 Sum_probs=60.9
Q ss_pred cCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCC-ccCCCCeEEEEc
Q 021721 238 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK-PVSVDTPLFVIE 307 (308)
Q Consensus 238 m~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd-~V~~GqpL~~Ie 307 (308)
..|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|++|++|.
T Consensus 20 ~~G~v~~-------~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~ 83 (108)
T 2dne_A 20 QAGTIAR-------WEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITV 83 (108)
T ss_dssp CEEEEEE-------CSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEE
T ss_pred ccEEEEE-------EEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEe
Confidence 5789999 99999999999999999999999999999999999999999999 899999999986
No 14
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.48 E-value=9.2e-15 Score=115.37 Aligned_cols=70 Identities=34% Similarity=0.545 Sum_probs=32.2
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
...|++|+.|++.+ |++++||.|++||+|+.||++|+..+|+||++|+|.++++++|+.|..|++|++|+
T Consensus 25 ~~~v~a~~~G~v~~-------~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 25 SSVLRSPMPGVVVA-------VSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp CCCCCCSSSCEEEE-------ECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred ceEEECCCCEEEEE-------EECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 35799999999999 99999999999999999999999999999999999999999999999999999885
No 15
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.48 E-value=7.7e-15 Score=113.19 Aligned_cols=68 Identities=25% Similarity=0.313 Sum_probs=65.2
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 233 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 233 ~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.|+.|..|++.+ |+|++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.
T Consensus 4 ~i~~p~~G~v~~-------~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~ 71 (85)
T 2k7v_A 4 EVNVPDIVEVTE-------VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFE 71 (85)
T ss_dssp CCCCCSCCCCCS-------CCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEE
T ss_pred EEECCCeEEEEE-------EEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 577888899998 99999999999999999999999999999999999999999999999999999986
No 16
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.47 E-value=1e-13 Score=110.17 Aligned_cols=70 Identities=31% Similarity=0.519 Sum_probs=67.4
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
...|.+|+.|++.+ |+|++||.|++||+|+.||.+|+..+|+||++|+|.+++++.|+.|..|++|++|.
T Consensus 14 ~~~v~a~~~G~v~~-------~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~ 83 (99)
T 2ejm_A 14 QGGPLAPMTGTIEK-------VFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFE 83 (99)
T ss_dssp CSSCBCSSSEEEEE-------ECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEEC
T ss_pred ceEEecCCCEEEEE-------EECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEE
Confidence 35799999999999 99999999999999999999999999999999999999999999999999999986
No 17
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.47 E-value=9.9e-14 Score=104.96 Aligned_cols=63 Identities=25% Similarity=0.297 Sum_probs=61.0
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 239 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 239 ~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
.|++.+ |++++||.|++||+||.||++|+..+|+||++|+|.++++++|+.|..|++|++|.+
T Consensus 14 ~G~v~~-------~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 76 (80)
T 1qjo_A 14 EVEVTE-------VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp CEEEEE-------CCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred CEEEEE-------EEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEc
Confidence 899999 999999999999999999999999999999999999999999999999999999863
No 18
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.45 E-value=2.6e-14 Score=108.57 Aligned_cols=69 Identities=19% Similarity=0.222 Sum_probs=65.2
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 233 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 233 ~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
.+.+++.|++.+ |++++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+
T Consensus 9 ~~g~~~~G~i~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (81)
T 1gjx_A 9 DIGGHENVDIIA-------VEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA 77 (81)
T ss_dssp CCSSCSSEEEEE-------ECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred CCCCCCcEEEEE-------EEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEe
Confidence 355689999999 999999999999999999999999999999999999999999999999999999864
No 19
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.45 E-value=1.2e-13 Score=150.69 Aligned_cols=71 Identities=31% Similarity=0.470 Sum_probs=68.2
Q ss_pred CCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021721 229 SSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 229 ~~~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~I 306 (308)
.+...|+|||+|+|++ |+|++||.|++||+||+||+|||+++|+||++|+|.+|++++|+.|.+|++|++|
T Consensus 1165 ~~~~~v~ap~~G~v~~-------~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1165 DDAELLYSEYTGRFWK-------PVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp TTCEEEECSSCEEEEE-------ESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred CCCcEEeCCCcEEEEE-------EEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 3456899999999999 9999999999999999999999999999999999999999999999999999987
No 20
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.45 E-value=1.4e-13 Score=115.70 Aligned_cols=63 Identities=30% Similarity=0.440 Sum_probs=60.7
Q ss_pred cCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCC-ccCCCCeEEEEc
Q 021721 238 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK-PVSVDTPLFVIE 307 (308)
Q Consensus 238 m~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd-~V~~GqpL~~Ie 307 (308)
..|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|++|++|+
T Consensus 40 ~~G~V~~-------~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~ 103 (128)
T 1y8o_B 40 TMGTVQR-------WEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV 103 (128)
T ss_dssp SEEEEEE-------ECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEE
T ss_pred ccEEEEE-------EecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEe
Confidence 4689999 99999999999999999999999999999999999999999998 899999999986
No 21
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.43 E-value=1.8e-13 Score=148.25 Aligned_cols=73 Identities=29% Similarity=0.382 Sum_probs=69.1
Q ss_pred CCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 229 SSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 229 ~~~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
.+...|.|||.|++++ |+|++||.|++||+||+||+|||+++|+||++|+|.++++++|+.|..|++|++|++
T Consensus 1075 ~~~~~v~ap~~G~v~~-------~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A 1075 SNPSHIGAQMPGSVTE-------VKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEK 1147 (1150)
T ss_dssp TCSSEEECSSSEEEEE-------ECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC-
T ss_pred CCCceeecCceEEEEE-------EEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEec
Confidence 3446899999999999 999999999999999999999999999999999999999999999999999999974
No 22
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.41 E-value=2.9e-13 Score=102.51 Aligned_cols=61 Identities=20% Similarity=0.338 Sum_probs=58.4
Q ss_pred EEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 241 TFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 241 t~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
++.+ |+|++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+
T Consensus 14 ~i~~-------~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~ 74 (79)
T 1iyu_A 14 EVIE-------LLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP 74 (79)
T ss_dssp EEEE-------ECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred EEEE-------EecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence 6777 999999999999999999999999999999999999999999999999999999864
No 23
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.41 E-value=1.2e-14 Score=110.67 Aligned_cols=65 Identities=23% Similarity=0.253 Sum_probs=61.8
Q ss_pred CcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 237 PMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 237 Pm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
...|++.+ |+|++||.|++||+||.||+||+.++|+||++|+|.++++++|+.|..|++|++|++
T Consensus 14 ~~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 14 VADATVAT-------WHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CSCEECCB-------CCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred CccEEEEE-------EECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 36789988 999999999999999999999999999999999999999999999999999999864
No 24
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.39 E-value=3e-14 Score=146.55 Aligned_cols=70 Identities=30% Similarity=0.529 Sum_probs=0.0
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
..|+|||+|++++ |+|++||.|++||+||+||+|||+++|+||.+|+|.++++++|+.|..|++|++|++
T Consensus 603 ~~v~ap~~G~v~~-------~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~~ 672 (675)
T 3u9t_A 603 GGLSAPMNGSIVR-------VLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDE 672 (675)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CeEECCCCEEEEE-------EEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcCCcCCCCEEEEEec
Confidence 5799999999999 999999999999999999999999999999999999999999999999999999864
No 25
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=99.23 E-value=2.3e-12 Score=134.06 Aligned_cols=70 Identities=27% Similarity=0.433 Sum_probs=67.2
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
...|.|||.|++++ |+|++||.|++||+|++||+|||.++|+||++|+|.++++++|+.|..|++|++|+
T Consensus 649 ~~~v~ap~~G~V~~-------v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 649 KGQIGAPMPGKVID-------IKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp SSCEECSSCEEEEE-------ECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred CceEeCCCCeEEEE-------EEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 35799999999999 99999999999999999999999999999999999999999999999999999874
No 26
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.21 E-value=6.4e-12 Score=136.38 Aligned_cols=70 Identities=34% Similarity=0.540 Sum_probs=61.0
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
...|.|||.|++++ |+|++||.|++||+|++||+|||.++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 1095 ~~~v~ap~~G~v~~-------~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1095 AAHVGAPMPGVISR-------VFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp TTEEECSSCEEEEE-------ECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred CceeeCCCCeEEEE-------EEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence 35799999999999 99999999999999999999999999999999999999999999999999999986
No 27
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=99.21 E-value=4.6e-12 Score=107.65 Aligned_cols=69 Identities=28% Similarity=0.334 Sum_probs=60.5
Q ss_pred CccCCcCeEEEcCCCCCCCCC-ccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEE---ecCCCCccC---CCC-eEE
Q 021721 233 PLKCPMAGTFYRSPAPGEPPF-VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEI---IAEDRKPVS---VDT-PLF 304 (308)
Q Consensus 233 ~V~APm~Gt~~r~p~p~~~~~-VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~ei---lVe~Gd~V~---~Gq-pL~ 304 (308)
.+.+|+.|.+.. .. .++||.|++||+||+||+||++++|.||++|+|+++ ++++|+.|. ||+ .|+
T Consensus 38 ~~a~~~lG~i~~-------V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~ 110 (136)
T 1zko_A 38 NHAQEQLGDVVY-------VDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLF 110 (136)
T ss_dssp HHHHHHHCSEEE-------EECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCE
T ss_pred hhhcccCCCcEE-------EEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEE
Confidence 356677777654 22 399999999999999999999999999999999999 899999999 999 999
Q ss_pred EEcC
Q 021721 305 VIEP 308 (308)
Q Consensus 305 ~Iep 308 (308)
+|++
T Consensus 111 ~i~~ 114 (136)
T 1zko_A 111 KMEI 114 (136)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9864
No 28
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=99.16 E-value=2.8e-12 Score=126.07 Aligned_cols=62 Identities=29% Similarity=0.516 Sum_probs=0.0
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 239 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 239 ~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
-|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|+.|+
T Consensus 16 eg~i~~-------w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~ 77 (428)
T 3dva_I 16 EGEIVK-------WFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLD 77 (428)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cEEEEE-------EEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEe
Confidence 478888 99999999999999999999999999999999999999999999999999999985
No 29
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.13 E-value=4.7e-12 Score=115.53 Aligned_cols=62 Identities=24% Similarity=0.438 Sum_probs=0.0
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCc-cCCCCeEEEEc
Q 021721 239 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKP-VSVDTPLFVIE 307 (308)
Q Consensus 239 ~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~-V~~GqpL~~Ie 307 (308)
.|++.+ |+|++||.|++||+||+||+||+.++|+|+++|+|.++++++|+. |..|++|++|+
T Consensus 17 eG~I~~-------w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~ 79 (229)
T 1zy8_K 17 EGNIVK-------WLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIV 79 (229)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cEEEEE-------EecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEe
Confidence 577877 999999999999999999999999999999999999999999997 99999999885
No 30
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=99.10 E-value=6.6e-11 Score=95.17 Aligned_cols=68 Identities=34% Similarity=0.423 Sum_probs=62.9
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEeccee-----------------------------eEEecCCC
Q 021721 233 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLM-----------------------------NEIEADRS 283 (308)
Q Consensus 233 ~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~-----------------------------~eI~Ap~s 283 (308)
.|.+++.|++.+ ++|++||.|++||+|+.|+..+.. ..|+||++
T Consensus 3 ~v~a~~~G~V~~-------v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~ 75 (116)
T 2k32_A 3 IIKPQVSGVIVN-------KLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFD 75 (116)
T ss_dssp EECCSSCEEEEE-------ECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSS
T ss_pred EEeCcCCEEEEE-------EECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCC
Confidence 588999999998 899999999999999999987544 48999999
Q ss_pred eEEEEEecCCCCccCCC-CeEEEEc
Q 021721 284 GTIVEIIAEDRKPVSVD-TPLFVIE 307 (308)
Q Consensus 284 GvV~eilVe~Gd~V~~G-qpL~~Ie 307 (308)
|+|.++.++.|+.|..| ++|+.|.
T Consensus 76 G~V~~~~~~~G~~v~~g~~~l~~i~ 100 (116)
T 2k32_A 76 GTIGDALVNIGDYVSASTTELVRVT 100 (116)
T ss_dssp EEECCCSCCTTCEECTTTSCCEEEE
T ss_pred EEEEEEECCCCCEEcCCCcEEEEEE
Confidence 99999999999999999 9999985
No 31
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.81 E-value=2.3e-09 Score=89.95 Aligned_cols=69 Identities=25% Similarity=0.375 Sum_probs=56.1
Q ss_pred ccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEec---CCCCcc---CCCC-eEEEE
Q 021721 234 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIA---EDRKPV---SVDT-PLFVI 306 (308)
Q Consensus 234 V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilV---e~Gd~V---~~Gq-pL~~I 306 (308)
...++.|.+... -+.++|++|++||+||+||+||+.++|.||++|+|++++. .+.+.| .||+ .|++|
T Consensus 30 ~a~~~lG~i~~v------~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i 103 (128)
T 1onl_A 30 YAQDALGDVVYV------ELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRL 103 (128)
T ss_dssp HHHHHHCSEEEE------ECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEE
T ss_pred HHhhcCCCceEE------EecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEE
Confidence 445666765441 1239999999999999999999999999999999999964 567777 7888 99988
Q ss_pred cC
Q 021721 307 EP 308 (308)
Q Consensus 307 ep 308 (308)
++
T Consensus 104 ~~ 105 (128)
T 1onl_A 104 KP 105 (128)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 32
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=98.80 E-value=2.1e-09 Score=90.58 Aligned_cols=68 Identities=18% Similarity=0.233 Sum_probs=56.0
Q ss_pred ccCCcCeEEEcCCCCCCCCC-ccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEec---CCCCccC---CCC-eEEE
Q 021721 234 LKCPMAGTFYRSPAPGEPPF-VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIA---EDRKPVS---VDT-PLFV 305 (308)
Q Consensus 234 V~APm~Gt~~r~p~p~~~~~-VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilV---e~Gd~V~---~Gq-pL~~ 305 (308)
+..++.|.+.. .. .++||+|++||+||+||+||+.++|.||++|+|++++. .+.+.|. ||+ .|++
T Consensus 30 ~a~~~lG~i~~-------v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~ 102 (131)
T 1hpc_A 30 HAQDHLGEVVF-------VELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIK 102 (131)
T ss_dssp HHHHHHCSEEE-------EECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEE
T ss_pred hhcccCCCceE-------EEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEE
Confidence 45677787655 33 39999999999999999999999999999999999974 4555674 787 8998
Q ss_pred EcC
Q 021721 306 IEP 308 (308)
Q Consensus 306 Iep 308 (308)
|++
T Consensus 103 i~~ 105 (131)
T 1hpc_A 103 IKP 105 (131)
T ss_dssp EEE
T ss_pred EEE
Confidence 863
No 33
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.79 E-value=3e-09 Score=89.27 Aligned_cols=69 Identities=23% Similarity=0.284 Sum_probs=56.6
Q ss_pred ccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEec---CCCCccC---CCC-eEEEE
Q 021721 234 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIA---EDRKPVS---VDT-PLFVI 306 (308)
Q Consensus 234 V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilV---e~Gd~V~---~Gq-pL~~I 306 (308)
+..++.|.+... -+.++|+.|++||+||+||+||+..+|.||++|+|++++. .+.+.|. ||+ .|++|
T Consensus 31 ~a~~~lG~i~~v------~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i 104 (128)
T 3a7l_A 31 HAQELLGDMVFV------DLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKI 104 (128)
T ss_dssp HHHHHHCSEEEE------ECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEE
T ss_pred HHhccCCceEEE------EecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEE
Confidence 455677765541 1249999999999999999999999999999999999974 6667777 888 89988
Q ss_pred cC
Q 021721 307 EP 308 (308)
Q Consensus 307 ep 308 (308)
++
T Consensus 105 ~~ 106 (128)
T 3a7l_A 105 KA 106 (128)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 34
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=98.47 E-value=2.3e-07 Score=86.38 Aligned_cols=71 Identities=23% Similarity=0.354 Sum_probs=63.7
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecce-----------------------------------
Q 021721 230 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL----------------------------------- 274 (308)
Q Consensus 230 ~~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~----------------------------------- 274 (308)
....|.++..|++.. ++|++||.|++||+|+.|+...+
T Consensus 56 ~~~~v~~~~~G~V~~-------v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~ 128 (359)
T 3lnn_A 56 KLVKVLPPLAGRIVS-------LNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAK 128 (359)
T ss_dssp SEEEECCSSCEEEEE-------CCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCC
T ss_pred cEEEEeccCCEEEEE-------EEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence 345799999999998 89999999999999999987543
Q ss_pred -----------------------------------------eeEEecCCCeEEEEEecCCCCccCC-CCeEEEEc
Q 021721 275 -----------------------------------------MNEIEADRSGTIVEIIAEDRKPVSV-DTPLFVIE 307 (308)
Q Consensus 275 -----------------------------------------~~eI~Ap~sGvV~eilVe~Gd~V~~-GqpL~~Ie 307 (308)
...|+||++|+|.++.++.|+.|.. |++|+.|.
T Consensus 129 ~~~~~a~~~~~~a~a~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~ 203 (359)
T 3lnn_A 129 RDFEQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVA 203 (359)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEe
Confidence 3579999999999999999999999 99999874
No 35
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=98.38 E-value=4.8e-07 Score=87.35 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=62.4
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCc-cCCCEEecCCEEEEEEec-------------------------------------
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFV-KVGDRVQKGQVLCIIEAM------------------------------------- 272 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~V-kvGD~VkkGqvL~iIEam------------------------------------- 272 (308)
...|.++..|++.+ ++| ++||.|++||+|+.|+..
T Consensus 121 ~~~v~a~~~G~V~~-------v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~ 193 (413)
T 3ne5_B 121 YAIVQARAAGFIDK-------VYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEA 193 (413)
T ss_dssp EEEECCSSCEEEEE-------ECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHH
T ss_pred eEEEecccCEEEEE-------EEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHH
Confidence 35799999999998 888 999999999999999842
Q ss_pred -----------ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 273 -----------KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 273 -----------K~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.....|+||++|+|.++.++.|+.|..|++|++|.
T Consensus 194 ~~~~l~~~~~~~~~~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~ 239 (413)
T 3ne5_B 194 DIRRLIATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQ 239 (413)
T ss_dssp HHHHHHHHTSCCCEEEEECSSSEEEEECCCCTTCEECTTSCSEEEE
T ss_pred HHHHHHHhccccccEEEEcCCCeEEEEEEcCCCCEECCCCcEEEEe
Confidence 12468999999999999999999999999999884
No 36
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=98.37 E-value=3.5e-07 Score=84.61 Aligned_cols=71 Identities=20% Similarity=0.330 Sum_probs=61.9
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecce-----------------------------------
Q 021721 230 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL----------------------------------- 274 (308)
Q Consensus 230 ~~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~----------------------------------- 274 (308)
....|.++..|++.. ++|++||.|++||+|+.|+...+
T Consensus 30 ~~~~v~~~~~G~V~~-------v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~ 102 (341)
T 3fpp_A 30 RKVDVGAQVSGQLKT-------LSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQ 102 (341)
T ss_dssp SEEECCCSSCEEEEE-------ECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred EEEEEeccCCcEEEE-------EEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345799999999998 89999999999999999986421
Q ss_pred --------------------------------------------------eeEEecCCCeEEEEEecCCCCccCCCCe--
Q 021721 275 --------------------------------------------------MNEIEADRSGTIVEIIAEDRKPVSVDTP-- 302 (308)
Q Consensus 275 --------------------------------------------------~~eI~Ap~sGvV~eilVe~Gd~V~~Gqp-- 302 (308)
...|+||++|+|.++.++.|+.|..|++
T Consensus 103 ~~L~~~~~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~ 182 (341)
T 3fpp_A 103 QRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAP 182 (341)
T ss_dssp HHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCC
T ss_pred HHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCc
Confidence 1459999999999999999999999998
Q ss_pred -EEEEc
Q 021721 303 -LFVIE 307 (308)
Q Consensus 303 -L~~Ie 307 (308)
|+.|.
T Consensus 183 ~l~~i~ 188 (341)
T 3fpp_A 183 NILTLA 188 (341)
T ss_dssp CCEEEE
T ss_pred eEEEEe
Confidence 88764
No 37
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=98.37 E-value=9.7e-08 Score=86.05 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=61.1
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecc--------------------------------------
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK-------------------------------------- 273 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK-------------------------------------- 273 (308)
..|.+++.|++.. ++|++||.|++||+|+.|+...
T Consensus 23 ~~v~a~~~G~V~~-------v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~ 95 (277)
T 2f1m_A 23 AEVRPQVSGIILK-------RNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYI 95 (277)
T ss_dssp EEECCSSCEEEEE-------ECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTC
T ss_pred EEEEccccEEEEE-------EEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4789999999998 8999999999999999998632
Q ss_pred ---------------------------------eeeEEecCCCeEEEEEecCCCCccCCC--CeEEEEc
Q 021721 274 ---------------------------------LMNEIEADRSGTIVEIIAEDRKPVSVD--TPLFVIE 307 (308)
Q Consensus 274 ---------------------------------~~~eI~Ap~sGvV~eilVe~Gd~V~~G--qpL~~Ie 307 (308)
-...|+||++|+|.++.++.|+.|..| ++|+.|.
T Consensus 96 s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~ 164 (277)
T 2f1m_A 96 SKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQ 164 (277)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEe
Confidence 124799999999999999999999999 6899874
No 38
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=98.21 E-value=5.5e-07 Score=85.16 Aligned_cols=71 Identities=17% Similarity=0.279 Sum_probs=62.0
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecce-----------------------------------
Q 021721 230 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL----------------------------------- 274 (308)
Q Consensus 230 ~~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~----------------------------------- 274 (308)
....|.+++.|++.. ++|++||.|++||+|+.|+...+
T Consensus 42 ~~~~v~a~v~G~V~~-------v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~ 114 (369)
T 1vf7_A 42 RIAEVRPQVNGIILK-------RLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQY 114 (369)
T ss_dssp CEEEECCSSCEEEEE-------CCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred eEEEEEeeCceEEEE-------EEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 345799999999998 89999999999999999976321
Q ss_pred ----------------------eeEEecCCCeEEEEEecCCCCccCCC--CeEEEEc
Q 021721 275 ----------------------MNEIEADRSGTIVEIIAEDRKPVSVD--TPLFVIE 307 (308)
Q Consensus 275 ----------------------~~eI~Ap~sGvV~eilVe~Gd~V~~G--qpL~~Ie 307 (308)
...|+||++|+|.++.++.|+.|..| ++|+.|.
T Consensus 115 ~~a~~~~~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~ 171 (369)
T 1vf7_A 115 ADANAAYLQSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQ 171 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEe
Confidence 25799999999999999999999995 8999874
No 39
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=98.07 E-value=4.5e-06 Score=70.00 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=44.8
Q ss_pred ccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCC---cc---CCCC-eEEEEc
Q 021721 254 VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK---PV---SVDT-PLFVIE 307 (308)
Q Consensus 254 VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd---~V---~~Gq-pL~~Ie 307 (308)
-++|+.|++||.+|.||++|+..+|.||++|+|++++.+-.+ .| .||+ -|++|+
T Consensus 40 p~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~ 100 (125)
T 3klr_A 40 PEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMT 100 (125)
T ss_dssp CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEE
T ss_pred CCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEE
Confidence 389999999999999999999999999999999999654433 33 3665 577765
No 40
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=97.97 E-value=4.2e-07 Score=84.76 Aligned_cols=70 Identities=19% Similarity=0.406 Sum_probs=60.6
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecce-----------------------------------
Q 021721 230 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL----------------------------------- 274 (308)
Q Consensus 230 ~~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~----------------------------------- 274 (308)
....|.++..|++.. ++|++||.|++||+|+.|+....
T Consensus 31 ~~~~v~~~~~G~V~~-------v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~ 103 (369)
T 4dk0_A 31 NTVDVGAQVSGKITK-------LYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRL 103 (369)
T ss_dssp SCCCBCCCSCSBCCE-------ECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred eeEEEecCCCcEEEE-------EEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446899999999988 89999999999999999986421
Q ss_pred --------------------------------------------------eeEEecCCCeEEEEEecCCCCccCCCCe--
Q 021721 275 --------------------------------------------------MNEIEADRSGTIVEIIAEDRKPVSVDTP-- 302 (308)
Q Consensus 275 --------------------------------------------------~~eI~Ap~sGvV~eilVe~Gd~V~~Gqp-- 302 (308)
...|+||++|+|.++.++.|+.|..|++
T Consensus 104 ~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~ 183 (369)
T 4dk0_A 104 SKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTTP 183 (369)
T ss_dssp HHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCBCCTTTSCC
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCCccCCCCcc
Confidence 1359999999999999999999999998
Q ss_pred -EEEE
Q 021721 303 -LFVI 306 (308)
Q Consensus 303 -L~~I 306 (308)
|+.|
T Consensus 184 ~l~~i 188 (369)
T 4dk0_A 184 TIIKV 188 (369)
T ss_dssp CCBBC
T ss_pred eEEEE
Confidence 6654
No 41
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=97.93 E-value=1.8e-05 Score=67.81 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=45.4
Q ss_pred ccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCcc------CCCC-eEEEEcC
Q 021721 254 VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPV------SVDT-PLFVIEP 308 (308)
Q Consensus 254 VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V------~~Gq-pL~~Iep 308 (308)
-++|+.|++||.+|.||++|...+|.||++|+|++++-+-.+.- .||+ -|++|++
T Consensus 62 P~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d~PeliN~dPy~~GWl~ki~~ 123 (143)
T 3mxu_A 62 PQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAESPELVNQKAETEGWLWKMTV 123 (143)
T ss_dssp CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHSTTTTTCCEEEEC
T ss_pred CCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhChHhhhCCCCCCCeEEEEEE
Confidence 38999999999999999999999999999999999986554431 4554 6777653
No 42
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=97.89 E-value=3.4e-05 Score=73.01 Aligned_cols=68 Identities=21% Similarity=0.171 Sum_probs=58.2
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEec----ceeeEEecCCCeEEEEEecCCCCccCCCCeEEE
Q 021721 230 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM----KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFV 305 (308)
Q Consensus 230 ~~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEam----K~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~ 305 (308)
....|+||..|.|+ ..++.||.|++||+|+.|... ....+|+||.+|+|.... ..-.|..|+.|+.
T Consensus 256 ~~~~v~A~~~Gl~~--------~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~--~~~~V~~G~~l~~ 325 (331)
T 3na6_A 256 GDCYLFSEHDGLFE--------IMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRH--FPGMIKSGDCAAV 325 (331)
T ss_dssp SCCCEECSSCEEEE--------ESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEE--CSSEECTTCEEEE
T ss_pred CcEEEeCCCCeEEE--------EcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEEEE
Confidence 34579999999877 479999999999999999973 567899999999998655 4578899999998
Q ss_pred Ec
Q 021721 306 IE 307 (308)
Q Consensus 306 Ie 307 (308)
|.
T Consensus 326 Ia 327 (331)
T 3na6_A 326 IG 327 (331)
T ss_dssp EE
T ss_pred Ee
Confidence 84
No 43
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=97.80 E-value=2e-05 Score=67.01 Aligned_cols=54 Identities=26% Similarity=0.431 Sum_probs=44.0
Q ss_pred ccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEec---CCCCcc---CCCC-eEEEEc
Q 021721 254 VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIA---EDRKPV---SVDT-PLFVIE 307 (308)
Q Consensus 254 VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilV---e~Gd~V---~~Gq-pL~~Ie 307 (308)
-++|++|++||.+|.||++|...+|.||++|+|++++- .+=+.| .||+ -|++|+
T Consensus 57 P~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~~l~~~P~liN~dPy~~GWl~ki~ 117 (137)
T 3tzu_A 57 PEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNTAAVDDPATIATDPYGAGWLYSVQ 117 (137)
T ss_dssp CCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECHHHHHCTHHHHHCTTTTTCCEEEE
T ss_pred CCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehhhhhcChhhhcCCCCcCCcEEEEE
Confidence 38999999999999999999999999999999999953 333333 4654 676665
No 44
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=97.74 E-value=6.5e-05 Score=71.45 Aligned_cols=67 Identities=21% Similarity=0.169 Sum_probs=57.8
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEe----cceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA----MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEa----mK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~I 306 (308)
...++|+..|.|. ..++.||.|++||+|+.|+. +++..+|.||.+|+|..+. ....|..|+.|+.|
T Consensus 267 ~~~v~A~~~G~~~--------~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~--~~~~V~~Gd~l~~i 336 (354)
T 3cdx_A 267 DAYVMAPRTGLFE--------PTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGA--GPGRVTRGDAVAVV 336 (354)
T ss_dssp GGEEECSSCEEEE--------ESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEE--CSSEECTTCEEEEE
T ss_pred cEEEECCCCEEEE--------EeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEe--CCCccCCCCEEEEE
Confidence 3568999999665 57899999999999999998 4788999999999998665 77789999999987
Q ss_pred c
Q 021721 307 E 307 (308)
Q Consensus 307 e 307 (308)
.
T Consensus 337 a 337 (354)
T 3cdx_A 337 M 337 (354)
T ss_dssp E
T ss_pred e
Confidence 4
No 45
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=97.67 E-value=7.2e-05 Score=72.00 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=57.9
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEe------cceeeEEecCCCeEEEEEecCCCCccCCCCeEE
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA------MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLF 304 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEa------mK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~ 304 (308)
...|+||..|.|+ ..++.||.|++||+|+.|.. .....+|+||.+|+|.... ..-.|..|+.|+
T Consensus 290 ~~~v~A~~~Gl~~--------~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~--~~p~V~~G~~l~ 359 (368)
T 3fmc_A 290 YRKFHAPKAGMVE--------YLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHF--ASASVHQGTELY 359 (368)
T ss_dssp EEEEECSSCEEEE--------ECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEEC--SSSEECTTCEEE
T ss_pred cEEEecCCCEEEE--------EeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEEE
Confidence 4579999999998 48999999999999999998 5577899999999997554 557899999999
Q ss_pred EEc
Q 021721 305 VIE 307 (308)
Q Consensus 305 ~Ie 307 (308)
.|-
T Consensus 360 ~i~ 362 (368)
T 3fmc_A 360 KVM 362 (368)
T ss_dssp EEE
T ss_pred EEe
Confidence 873
No 46
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=97.48 E-value=0.00014 Score=63.31 Aligned_cols=65 Identities=17% Similarity=0.325 Sum_probs=55.9
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEec----CCEEEEEEecceeeEEecCCCeEEEEE------------------
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIVEI------------------ 289 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~Vkk----GqvL~iIEamK~~~eI~Ap~sGvV~ei------------------ 289 (308)
..|.||+.|++.. .-++.|.|-. |+-+++... ...|+||++|+|..+
T Consensus 13 ~~i~aP~~G~vv~--------l~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evL 81 (162)
T 1ax3_A 13 EVFVSPITGEIHP--------ITDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREIL 81 (162)
T ss_dssp SSCCCCCSEEEEE--------GGGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEE
T ss_pred CEEEecCceEEEE--------eEECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEE
Confidence 3699999999996 5778888766 888888876 458899999999988
Q ss_pred -----------------ecCCCCccCCCCeEEEEc
Q 021721 290 -----------------IAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 290 -----------------lVe~Gd~V~~GqpL~~Ie 307 (308)
+++.||.|..||+|+++.
T Consensus 82 iHIGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d 116 (162)
T 1ax3_A 82 IHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVD 116 (162)
T ss_dssp EECSSSTTTTTTTTEEESCCCCSEECSEEEEEEEC
T ss_pred EEECccchhcCCCccEEEEeCCCEEcCCCEEEEEC
Confidence 899999999999999874
No 47
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=97.46 E-value=0.00015 Score=62.86 Aligned_cols=55 Identities=22% Similarity=0.265 Sum_probs=43.6
Q ss_pred ccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCC---cc---CCCC-eEEEEcC
Q 021721 254 VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK---PV---SVDT-PLFVIEP 308 (308)
Q Consensus 254 VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd---~V---~~Gq-pL~~Iep 308 (308)
-++|+.|++|+.+|.||++|...+|.||++|+|++++-+.-+ .| .||+ -|++|++
T Consensus 67 P~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~~L~d~PeliN~dPyg~GWl~kik~ 128 (155)
T 3hgb_A 67 PVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQV 128 (155)
T ss_dssp CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEC
T ss_pred CCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhChHhhccCCCCCcEEEEEEE
Confidence 389999999999999999999999999999999998743221 12 3553 6666653
No 48
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=4.1e-05 Score=60.34 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=41.8
Q ss_pred CCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 263 GQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 263 GqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
|..+|.++.++-...|.|+.+|+|.++++++||.|..||+|++|+
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le 49 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEME 49 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEE
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEE
Confidence 556688999999999999999999999999999999999999986
No 49
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=97.35 E-value=0.00024 Score=61.23 Aligned_cols=65 Identities=25% Similarity=0.349 Sum_probs=56.0
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEec----CCEEEEEEecceeeEEecCCCeEEEE-------------------
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIVE------------------- 288 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~Vkk----GqvL~iIEamK~~~eI~Ap~sGvV~e------------------- 288 (308)
..|.||+.|++.. .-+++|.|-. |+.+++...+ ..|+||++|+|..
T Consensus 8 ~~i~aP~~G~vv~--------l~~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evL 76 (154)
T 2gpr_A 8 LKVLAPCDGTIIT--------LDEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEIL 76 (154)
T ss_dssp EEEECSSSEEEEC--------GGGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEE
T ss_pred CEEEecCCeEEEE--------eeECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEE
Confidence 3589999999995 5688888777 8899988875 5899999999997
Q ss_pred ----------------EecCCCCccCCCCeEEEEc
Q 021721 289 ----------------IIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 289 ----------------ilVe~Gd~V~~GqpL~~Ie 307 (308)
++++.||.|..||+|+++.
T Consensus 77 iHiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d 111 (154)
T 2gpr_A 77 LHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVD 111 (154)
T ss_dssp EECSSSGGGGTTCSEEECCCTTCEECTTCEEEEEC
T ss_pred EEECcchhhcCCCceEEEEcCCCEEcCCCEEEEEC
Confidence 4899999999999999874
No 50
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=97.35 E-value=0.00022 Score=61.96 Aligned_cols=65 Identities=28% Similarity=0.369 Sum_probs=56.0
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEec----CCEEEEEEecceeeEEecCCCeEEEEE------------------
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIVEI------------------ 289 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~Vkk----GqvL~iIEamK~~~eI~Ap~sGvV~ei------------------ 289 (308)
..|.||+.|++.. .-++.|.|-. |+-+++...+ ..|+||++|+|..+
T Consensus 13 ~~i~aP~~G~vv~--------l~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evL 81 (161)
T 1f3z_A 13 IEIIAPLSGEIVN--------IEDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELF 81 (161)
T ss_dssp EEEECSSCEEEEE--------GGGSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cEEEecCCeEEEE--------eEECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEE
Confidence 3599999999996 4577888766 8888888775 58899999999988
Q ss_pred -----------------ecCCCCccCCCCeEEEEc
Q 021721 290 -----------------IAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 290 -----------------lVe~Gd~V~~GqpL~~Ie 307 (308)
+++.||.|..||+|+++.
T Consensus 82 iHiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d 116 (161)
T 1f3z_A 82 VHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFD 116 (161)
T ss_dssp EECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred EEECccchhcCCCccEEEEeCcCEECCCCEEEEEC
Confidence 899999999999999874
No 51
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=96.88 E-value=0.0024 Score=59.95 Aligned_cols=66 Identities=24% Similarity=0.355 Sum_probs=55.1
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEe----cceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA----MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEa----mK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..++||..|.+. .+++.|+.|++||+|+.|.. ++...+|+||.+|+|.-.. ..-.|..|+.|+.|.
T Consensus 258 ~~~~a~~~G~~~--------~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~V~~Gd~l~~ia 327 (332)
T 2qj8_A 258 DQLKSPSPGIFE--------PRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMYVQGNEEVAILA 327 (332)
T ss_dssp GEEECSSSEEEE--------ECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEEECTTCEEEEEE
T ss_pred eEEeCCCCeEEE--------EeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCeeCCCCEEEEEe
Confidence 367899999776 46889999999999999965 5677899999999997654 566788899998873
No 52
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=96.82 E-value=0.001 Score=48.29 Aligned_cols=31 Identities=6% Similarity=0.245 Sum_probs=29.2
Q ss_pred EEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 277 EIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 277 eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.|.|+.+|+|.++++++|+.|..||+|++|+
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~ 31 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILE 31 (72)
T ss_dssp CEECCSSEEEEEECCCTTCEECTTCEEEEEE
T ss_pred CEECcccEEEEEEEcCCcCEECCCCEEEEEE
Confidence 3789999999999999999999999999986
No 53
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=96.71 E-value=0.0015 Score=47.30 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=30.1
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|.|+.+|+|.++++++|+.|..||+|++|+
T Consensus 6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~ 37 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLE 37 (74)
T ss_dssp CEEECSSCEEEEEECCCTTCEECTTCEEEEEE
T ss_pred eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEe
Confidence 46899999999999999999999999999986
No 54
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=96.61 E-value=0.0017 Score=47.77 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=30.7
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 275 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 275 ~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
...|.|+.+|+|.++++++|+.|..||+|++|+
T Consensus 8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~ 40 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLE 40 (77)
T ss_dssp SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEE
T ss_pred CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEE
Confidence 357899999999999999999999999999986
No 55
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=96.39 E-value=0.0016 Score=49.58 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=30.3
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|.||.+|+|.++++++|+.|..||+|+.|+
T Consensus 6 ~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie 37 (84)
T 2kcc_A 6 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEME 37 (84)
T ss_dssp TEECCSSSCCEEEESSCTTEEECTTCEEEEEE
T ss_pred ceEECCCCEEEEEEECCCCCEECCCCEEEEEE
Confidence 46999999999999999999999999999986
No 56
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=95.90 E-value=0.0047 Score=48.03 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=30.6
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 275 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 275 ~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
...|.|+.+|+|.++++++|+.|..||+|++|+
T Consensus 25 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie 57 (94)
T 2jku_A 25 SSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIE 57 (94)
T ss_dssp CCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEE
T ss_pred ceEEECCCCEEEEEEECCCCCEEcCCCEEEEEe
Confidence 356889999999999999999999999999986
No 57
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=95.84 E-value=0.0074 Score=44.52 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=30.4
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEe
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEa 271 (308)
..|+||..|++.+ .++++||.|..|++|+.|++
T Consensus 45 ~~i~Ap~~G~v~~-------~~v~~G~~v~~g~~l~~i~~ 77 (77)
T 2l5t_A 45 VKIPSPVRGKIVK-------ILYREGQVVPVGSTLLQIDT 77 (77)
T ss_dssp EECCCCCCEEEEE-------ECCCTTCEECSCSEEEEEEC
T ss_pred EEEECCCCEEEEE-------EEeCCcCEECCCCEEEEEEC
Confidence 4799999999998 78999999999999999874
No 58
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=95.82 E-value=0.0088 Score=54.97 Aligned_cols=54 Identities=26% Similarity=0.294 Sum_probs=42.3
Q ss_pred ccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 254 VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 254 VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
|+.|+.-..=..-+.|+..+ ...|.++.+|+|.++++++|+.|..||+|++|.+
T Consensus 11 v~~~~~~~~v~~~G~v~~~~-~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 64 (341)
T 3fpp_A 11 VRPGDLQQSVLATGKLDALR-KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 64 (341)
T ss_dssp --CCCCCCEEEEEEEEEESS-EEECCCSSCEEEEEECCCTTCEECTTCEEEEECC
T ss_pred EEEeceeEEEEEEEEEEeeE-EEEEeccCCcEEEEEEeCCCCEECCCCEEEEECh
Confidence 45555444445567788764 5689999999999999999999999999999864
No 59
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=95.79 E-value=0.0054 Score=48.04 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=30.6
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 275 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 275 ~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
...|.++.+|+|.++++++|+.|..||+|++|+
T Consensus 14 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie 46 (99)
T 2ejm_A 14 QGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMI 46 (99)
T ss_dssp CSSCBCSSSEEEEEECCCTTEEECSSCEEEEEE
T ss_pred ceEEecCCCEEEEEEECCCCCEECCCCEEEEEE
Confidence 356899999999999999999999999999986
No 60
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=95.79 E-value=0.0082 Score=53.70 Aligned_cols=51 Identities=31% Similarity=0.382 Sum_probs=40.2
Q ss_pred CCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEe-----------------------------cCCCCccC
Q 021721 248 PGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII-----------------------------AEDRKPVS 298 (308)
Q Consensus 248 p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eil-----------------------------Ve~Gd~V~ 298 (308)
-+...+|+.|+.|++||+||.=. +|.+.++|+|.+.. +++|+.|.
T Consensus 19 yGA~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d~k~lP~I~I~d~~G~~~~~Y~LPvgA~l~~~V~dG~~V~ 92 (193)
T 2xha_A 19 PKAKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVK 92 (193)
T ss_dssp TTCEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTSSCEEEEEEEGGGCCCTTCCTTCEEC
T ss_pred CCCEEEECCCCEEcCCCEEEEeC------cEEEccCEEEEeeccCcEEEEEcCCCCEeEEEEcCCCCEEEEEcCCCCEEc
Confidence 34456799999999999999765 88888888886543 67778888
Q ss_pred CCCeEE
Q 021721 299 VDTPLF 304 (308)
Q Consensus 299 ~GqpL~ 304 (308)
.|++|+
T Consensus 93 ~GdvLA 98 (193)
T 2xha_A 93 QGLPLS 98 (193)
T ss_dssp TTSBSS
T ss_pred CCCEEe
Confidence 887764
No 61
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=95.74 E-value=0.0059 Score=56.56 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=44.0
Q ss_pred ccCCCEEecCCEEEEEEec-ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 254 VKVGDRVQKGQVLCIIEAM-KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 254 VkvGD~VkkGqvL~iIEam-K~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
|+.|+.-..=..-+.|++. .-...|.++.+|+|.++++++|+.|..||+|++|.+
T Consensus 35 v~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~ 90 (359)
T 3lnn_A 35 ATRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDS 90 (359)
T ss_dssp CEEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEEC
T ss_pred eeecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEECh
Confidence 3444444444566788875 567899999999999999999999999999999863
No 62
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=95.51 E-value=0.007 Score=44.97 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=29.8
Q ss_pred eEEecCCCeEEEEE-------ecCCCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVEI-------IAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~ei-------lVe~Gd~V~~GqpL~~Ie 307 (308)
..|.||..|+|.++ ++++|+.|..||+|++|+
T Consensus 5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie 43 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVE 43 (80)
T ss_dssp EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEE
T ss_pred eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEE
Confidence 46899999999998 999999999999999986
No 63
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=95.42 E-value=0.0087 Score=44.36 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=31.3
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEe
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEa 271 (308)
...|+||..|++.+ .++++||.|..|++|+.|+.
T Consensus 43 ~~~i~Ap~~G~v~~-------~~v~~G~~V~~G~~l~~i~~ 76 (80)
T 1qjo_A 43 SMEVPAPFAGVVKE-------LKVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp CEEEEBSSCEEEEE-------CCCCTTCEECTTCCCEEEES
T ss_pred eEEEeCCCCEEEEE-------EecCCCCEECCCCEEEEEEc
Confidence 35899999999998 89999999999999999985
No 64
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=95.11 E-value=0.013 Score=55.09 Aligned_cols=44 Identities=18% Similarity=0.358 Sum_probs=37.2
Q ss_pred CEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 264 QVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 264 qvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
...+.|+.. -...|.++.+|+|.++++++|+.|..||+|++|.+
T Consensus 33 ~~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~ 76 (369)
T 1vf7_A 33 ELPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP 76 (369)
T ss_dssp EEEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECC
T ss_pred EEEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 345667764 34689999999999999999999999999999964
No 65
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=95.00 E-value=0.017 Score=42.80 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=30.9
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEec
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 272 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEam 272 (308)
..|+||..|++.. .++++|+.|..|++|+.|+..
T Consensus 42 ~~i~Ap~~G~v~~-------~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 42 MEVPSPKAGVVKS-------VSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp EEEECSSSSEEEE-------ESCCTTCEEETTSEEEEEECC
T ss_pred EEEECCCCEEEEE-------EEeCCCCEECCCCEEEEEecC
Confidence 4799999999998 789999999999999999753
No 66
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=94.83 E-value=0.025 Score=54.48 Aligned_cols=50 Identities=30% Similarity=0.339 Sum_probs=39.8
Q ss_pred CCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEe-----------------------------cCCCCccCC
Q 021721 249 GEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII-----------------------------AEDRKPVSV 299 (308)
Q Consensus 249 ~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eil-----------------------------Ve~Gd~V~~ 299 (308)
+...+|+.|+.|++||+||.=+ +|.+.++|+|.+.. +++|+.|..
T Consensus 60 ga~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~~~~~~p~i~i~d~~g~~~y~lp~ga~l~~~v~~g~~v~~ 133 (352)
T 2xhc_A 60 KAKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVKQ 133 (352)
T ss_dssp TCEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTCSSEEEEEEEGGGCBCTTCCTTCEECT
T ss_pred CCEEEecCCCEEcCCCEEEEec------cEEEecceEEEeeccCCceEEEEEcCCCCEEEEcCCCcEEEEecCCCCEEcc
Confidence 3446799999999999999866 78888888776433 778888888
Q ss_pred CCeEE
Q 021721 300 DTPLF 304 (308)
Q Consensus 300 GqpL~ 304 (308)
|++|+
T Consensus 134 G~vla 138 (352)
T 2xhc_A 134 GLPLS 138 (352)
T ss_dssp TCBSB
T ss_pred CcEEe
Confidence 88775
No 67
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=94.73 E-value=0.018 Score=42.74 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=30.3
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEe
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEa 271 (308)
..|+||..|++.+ .++++||.|..|++|+.|+.
T Consensus 45 ~~i~Ap~~G~v~~-------~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 45 MEVLAEADGVIAE-------IVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EEEECSSCEEEEE-------ESSCTTCEECTTCEEEEECC
T ss_pred EEEEcCCCEEEEE-------EEcCCcCEECCCCEEEEEec
Confidence 5799999999998 89999999999999999864
No 68
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=94.72 E-value=0.014 Score=54.19 Aligned_cols=55 Identities=22% Similarity=0.205 Sum_probs=44.0
Q ss_pred CccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021721 253 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 308 (308)
Q Consensus 253 ~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Iep 308 (308)
.|+.|+.-..=..-+.|+..+ ...|.++.+|+|.++++++|+.|..||+|++|.+
T Consensus 11 ~v~~~~~~~~v~~~G~v~~~~-~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~ 65 (369)
T 4dk0_A 11 EVKRGNIEKNVVATGSIESIN-TVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDS 65 (369)
T ss_dssp CCCEECCCCCCEEEEEEECSS-CCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCC
T ss_pred EEEecceeEEEEEeEEEEeee-eEEEecCCCcEEEEEEECCCCEECCCCEEEEEcC
Confidence 345555555556667888654 4689999999999999999999999999999863
No 69
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=94.64 E-value=0.025 Score=41.98 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=27.4
Q ss_pred EecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 278 IEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 278 I~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
+-++..|+|.++++++||.|..||+|+.|+
T Consensus 10 ~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie 39 (81)
T 1gjx_A 10 IGGHENVDIIAVEVNVGDTIAVDDTLITLE 39 (81)
T ss_dssp CSSCSSEEEEEECCCSSCBCCSSCCCEEEE
T ss_pred CCCCCcEEEEEEEcCCCCEECCCCEEEEEE
Confidence 446789999999999999999999999986
No 70
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=94.63 E-value=0.038 Score=41.96 Aligned_cols=27 Identities=22% Similarity=0.086 Sum_probs=25.2
Q ss_pred CCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 281 DRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 281 p~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..+|+|.++++++||.|..||+|+.|+
T Consensus 17 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie 43 (87)
T 3crk_C 17 MTMGTVQRWEKKVGEKLSEGDLLAEIE 43 (87)
T ss_dssp CCEEEEEEECSCTTCEECTTCEEEEEE
T ss_pred CCcEEEEEEEcCCCCEEcCCCEEEEEE
Confidence 358999999999999999999999986
No 71
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=94.55 E-value=0.035 Score=43.06 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=25.2
Q ss_pred CCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 281 DRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 281 p~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..+|+|.++++++||.|..||+|++|+
T Consensus 16 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie 42 (93)
T 1k8m_A 16 IREVTVKEWYVKEGDTVSQFDSICEVQ 42 (93)
T ss_dssp SCCEEEEEECCCTTCEECSSSCCEEEE
T ss_pred CCCEEEEEEEcCCcCEECCCCEEEEEE
Confidence 358999999999999999999999986
No 72
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=94.42 E-value=0.03 Score=44.90 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=28.6
Q ss_pred eeeEEecC------CCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 274 LMNEIEAD------RSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 274 ~~~eI~Ap------~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
|..+|..| .+|+|.++++++||.|..||+|++|+
T Consensus 6 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE 45 (108)
T 2dne_A 6 SGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVE 45 (108)
T ss_dssp CCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEE
T ss_pred cceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEE
Confidence 34555544 57999999999999999999999997
No 73
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=94.31 E-value=0.04 Score=52.92 Aligned_cols=54 Identities=17% Similarity=0.122 Sum_probs=42.5
Q ss_pred ccCCCEEecCCEEEEEEec-ceeeEEecCCCeEEEEEec-CCCCccCCCCeEEEEc
Q 021721 254 VKVGDRVQKGQVLCIIEAM-KLMNEIEADRSGTIVEIIA-EDRKPVSVDTPLFVIE 307 (308)
Q Consensus 254 VkvGD~VkkGqvL~iIEam-K~~~eI~Ap~sGvV~eilV-e~Gd~V~~GqpL~~Ie 307 (308)
|+.|+.-..=...+.|+.+ .-...|.++.+|+|.++++ ++||.|..||+|++|.
T Consensus 99 v~~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld 154 (413)
T 3ne5_B 99 VTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLT 154 (413)
T ss_dssp CEEECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEE
T ss_pred EEEeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEc
Confidence 3444444444566777753 4567899999999999998 9999999999999986
No 74
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=94.07 E-value=0.016 Score=43.85 Aligned_cols=35 Identities=31% Similarity=0.491 Sum_probs=31.6
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEec
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 272 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEam 272 (308)
...|+||+.|++.+ .++++|+.|..|++|+.|+..
T Consensus 39 ~~~i~Ap~~G~V~~-------~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 39 SMEVPAPFAGVVKE-------LKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp EEEEECSSCBCCCE-------ECSCTTCCBCTTSEEEEEECC
T ss_pred EEEEECCCCEEEEE-------EEeCCCCEECCCCEEEEEEcC
Confidence 35799999999988 789999999999999999864
No 75
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=93.98 E-value=0.026 Score=48.52 Aligned_cols=73 Identities=12% Similarity=0.161 Sum_probs=46.2
Q ss_pred CCccCCcCeEEEcCCC----------CCC------------------CCCccCCCEEecCCEEEEEEecc---------e
Q 021721 232 PPLKCPMAGTFYRSPA----------PGE------------------PPFVKVGDRVQKGQVLCIIEAMK---------L 274 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~----------p~~------------------~~~VkvGD~VkkGqvL~iIEamK---------~ 274 (308)
..|+||..|++....+ -+. ..+|++||+|++||.|+.+.-.. .
T Consensus 45 ~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t 124 (154)
T 2gpr_A 45 NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKS 124 (154)
T ss_dssp SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCE
T ss_pred CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCCceEEEEcCCCEEcCCCEEEEECHHHHHhcCCCCeE
Confidence 4799999999876321 111 14899999999999999986322 1
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 275 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 275 ~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.+-|.- .+ +..+....+..|..|+.|+.++
T Consensus 125 ~vvvtn-~~--~~~~~~~~~~~v~~g~~~~~~~ 154 (154)
T 2gpr_A 125 PIIFTN-NG--GKTLEIVKMGEVKQGDVVAILK 154 (154)
T ss_dssp EEEEEE-CS--SCCCSCBCCEEECTTCEEEEEC
T ss_pred EEEEEC-CC--cceEEEccCceEcCCCEEEEeC
Confidence 122222 11 1122333456688999998874
No 76
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=93.94 E-value=0.02 Score=42.70 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=30.6
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEe
Q 021721 231 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 231 ~~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEa 271 (308)
...|+||..|++.+ .++++||.|..|++|+.|+.
T Consensus 45 ~~~i~Ap~~G~v~~-------~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 45 VLEVPASADGILDA-------VLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CCCCBCCSBCCCCB-------CTTCTTCEECSSSEEEBCCC
T ss_pred EEEEECCCCEEEEE-------EEcCCcCEECCCCEEEEEec
Confidence 35899999999998 89999999999999998864
No 77
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=93.65 E-value=0.07 Score=46.77 Aligned_cols=39 Identities=31% Similarity=0.354 Sum_probs=35.0
Q ss_pred CCccCCCEEecCCEEEEEEecceee-EEecCCCeEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEAMKLMN-EIEADRSGTIVEII 290 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEamK~~~-eI~Ap~sGvV~eil 290 (308)
+.+.+|++|.+|+.|+.|.+.|-.+ -|+||++|+|.-+.
T Consensus 114 ~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~ 153 (169)
T 3d4r_A 114 PIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMN 153 (169)
T ss_dssp ECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEE
T ss_pred EEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEE
Confidence 6899999999999999999999655 48899999998765
No 78
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=93.40 E-value=0.083 Score=46.55 Aligned_cols=48 Identities=15% Similarity=0.036 Sum_probs=40.3
Q ss_pred CCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCc
Q 021721 247 APGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKP 296 (308)
Q Consensus 247 ~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~ 296 (308)
+.+...+|+.|+.|++||+||.. ++...+|.++++|+|.--.+.+|..
T Consensus 59 pyGa~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t 106 (190)
T 2auk_A 59 PYGAVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQT 106 (190)
T ss_dssp CTTCEESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTT
T ss_pred CCCCEEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcc
Confidence 34555789999999999999966 6889999999999999777777654
No 79
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.17 E-value=0.064 Score=42.06 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=31.7
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEE-ecCCEEEEEEecc
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRV-QKGQVLCIIEAMK 273 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~V-kkGqvL~iIEamK 273 (308)
..|+||..|++.+ .++++||.| ..||+|+.|+...
T Consensus 51 ~~i~Ap~~G~v~~-------i~v~~G~~Vv~~G~~l~~i~~~~ 86 (98)
T 2dnc_A 51 VTLDASDDGILAK-------IVVEEGSKNIRLGSLIGLIVEEG 86 (98)
T ss_dssp EEEECSSCEEEEE-------CSSCTTCCCEESSCEEEEEECTT
T ss_pred eEEeCCCCEEEEE-------EEeCCCCEEcCCCCEEEEEecCC
Confidence 5799999999998 899999998 9999999998643
No 80
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=93.14 E-value=0.089 Score=43.73 Aligned_cols=26 Identities=23% Similarity=0.128 Sum_probs=24.5
Q ss_pred CCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 282 RSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 282 ~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.+|+|.++++++||.|..||+|+.|+
T Consensus 40 ~~G~V~~~~V~~Gd~V~~Gd~L~~iE 65 (128)
T 1y8o_B 40 TMGTVQRWEKKVGEKLSEGDLLAEIE 65 (128)
T ss_dssp SEEEEEEECSCTTCEECTTCEEEEEE
T ss_pred ccEEEEEEecCCCCEecCCCEEEEEE
Confidence 46999999999999999999999986
No 81
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=93.09 E-value=0.028 Score=50.19 Aligned_cols=51 Identities=25% Similarity=0.240 Sum_probs=40.8
Q ss_pred CCCCCC--ccCCCEEecCCEEEEEEecceeeEEecCCCeEEEE--------------------------E--ecCCCCcc
Q 021721 248 PGEPPF--VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVE--------------------------I--IAEDRKPV 297 (308)
Q Consensus 248 p~~~~~--VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~e--------------------------i--lVe~Gd~V 297 (308)
.+.-.. |+.|++|+.||+|+ -...|-|+++|+|.- + +|.+||.|
T Consensus 77 vgA~l~~~V~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V 150 (193)
T 2xha_A 77 ESAGIEPGLRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEV 150 (193)
T ss_dssp GGGCCCTTCCTTCEECTTSBSS------TTSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEE
T ss_pred CCCEEEEEcCCCCEEcCCCEEe------cCCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEE
Confidence 344467 99999999999998 335567888887762 3 89999999
Q ss_pred CCCCeEE
Q 021721 298 SVDTPLF 304 (308)
Q Consensus 298 ~~GqpL~ 304 (308)
..|++|.
T Consensus 151 ~~Ge~L~ 157 (193)
T 2xha_A 151 KQGEMLA 157 (193)
T ss_dssp CTTCEEE
T ss_pred CCCCCcc
Confidence 9999986
No 82
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=93.08 E-value=0.1 Score=46.20 Aligned_cols=65 Identities=25% Similarity=0.326 Sum_probs=46.6
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEec----CCEEEEEEecceeeEEecCCCeEEEE-------------------
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIVE------------------- 288 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~Vkk----GqvL~iIEamK~~~eI~Ap~sGvV~e------------------- 288 (308)
..|.||+.|++.. +-++-|.|=. |+-++++=.. ..|.||++|+|..
T Consensus 35 ~~i~aPv~G~vi~--------L~eV~D~vFs~~~mGdG~AI~P~~---g~v~AP~dG~V~~vfpT~HAigi~s~~G~EvL 103 (183)
T 3our_B 35 IEIIAPLSGEIVN--------IEDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVNGTIGKIFETNHAFSIESDDGVELF 103 (183)
T ss_dssp EEEECSSCEEEEE--------GGGSSCHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eEEEeecceEEEE--------chhCcChHhcccCccCeEEEEcCC---CEEEeCCCeEEEEECCCCCEEEEEeCCCCEEE
Confidence 4699999999985 5566666522 7777766543 3688888887765
Q ss_pred ----------------EecCCCCccCCCCeEEEEc
Q 021721 289 ----------------IIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 289 ----------------ilVe~Gd~V~~GqpL~~Ie 307 (308)
.+|++||.|..||+|+++.
T Consensus 104 IHIGiDTV~L~G~gF~~~V~~Gd~Vk~Gd~L~~fD 138 (183)
T 3our_B 104 VHFGIDTVELKGEGFTRIAEEGQTVKAGDTVIEFD 138 (183)
T ss_dssp EECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred EEecccccccCCccceEEEeCcCEEcCCCEEEEEC
Confidence 3455677799999998864
No 83
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=92.05 E-value=0.089 Score=45.56 Aligned_cols=40 Identities=30% Similarity=0.460 Sum_probs=30.4
Q ss_pred CCccCCcCeEEEcCCC----------CCC------------------CCCccCCCEEecCCEEEEEEe
Q 021721 232 PPLKCPMAGTFYRSPA----------PGE------------------PPFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~----------p~~------------------~~~VkvGD~VkkGqvL~iIEa 271 (308)
..|+||..|++....+ -+. ..+|++||+|++||.|+.+.-
T Consensus 50 ~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 117 (162)
T 1ax3_A 50 GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDL 117 (162)
T ss_dssp SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTTTEEESCCCCSEECSEEEEEEECH
T ss_pred CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCCccEEEEeCCCEEcCCCEEEEECH
Confidence 4789999999986421 111 138999999999999999863
No 84
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=92.01 E-value=0.11 Score=53.52 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=30.8
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 275 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 275 ~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
...|.||..|+|.+++|++||.|..||+|++|+
T Consensus 612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iE 644 (681)
T 3n6r_A 612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIE 644 (681)
T ss_dssp CSEEECCSCEEEEEECCCTTCEECTTCEEEEEE
T ss_pred CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEE
Confidence 356999999999999999999999999999987
No 85
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=91.50 E-value=0.11 Score=40.98 Aligned_cols=34 Identities=26% Similarity=0.478 Sum_probs=30.6
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecC-CEEEEEEec
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKG-QVLCIIEAM 272 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkG-qvL~iIEam 272 (308)
..|+||+.|++.. ..+++|+.|..| +.|+.|...
T Consensus 68 ~~i~AP~~G~V~~-------~~~~~G~~v~~g~~~l~~i~~~ 102 (116)
T 2k32_A 68 TEIKAPFDGTIGD-------ALVNIGDYVSASTTELVRVTNL 102 (116)
T ss_dssp EEEECSSSEEECC-------CSCCTTCEECTTTSCCEEEECS
T ss_pred CEEEcCCCEEEEE-------EECCCCCEEcCCCcEEEEEECC
Confidence 5799999999998 789999999999 999998754
No 86
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=91.50 E-value=0.19 Score=43.51 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=30.1
Q ss_pred CCccCCcCeEEEcCCC----------CC------------------CCCCccCCCEEecCCEEEEEEe
Q 021721 232 PPLKCPMAGTFYRSPA----------PG------------------EPPFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~----------p~------------------~~~~VkvGD~VkkGqvL~iIEa 271 (308)
..|+||+.|++....+ -+ -..+|++||+|++||.|+.+.-
T Consensus 50 ~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 117 (161)
T 1f3z_A 50 NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCCccEEEEeCcCEECCCCEEEEECH
Confidence 4789999999876321 11 1138999999999999999863
No 87
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=89.91 E-value=0.26 Score=46.75 Aligned_cols=62 Identities=8% Similarity=-0.010 Sum_probs=46.7
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021721 233 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 233 ~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~I 306 (308)
.|.++..|.+...+ ..++.|+.|++||+|+.+-. .+|.+|.+|++.- .. .-.|..|+.++.|
T Consensus 265 ~v~a~~~g~~~~~~-----~~~~~g~~V~~G~~La~i~d----~~v~a~~dG~~i~--~p-~p~V~~G~~~~~i 326 (350)
T 2bco_A 265 TIVRLHDDFDFMFD-----DNVENFTSFVHGEVFGHDGD----KPLMAKNDNEAIV--FP-NRHVAIGQRAALM 326 (350)
T ss_dssp EEECCSSSEEESSC-----TTCCBTEECCTTCEEEEETT----EEEECSSSSCEEE--SC-CTTCCTTSEEEEE
T ss_pred EEEcCCCCeEEecc-----ccccCCCEeCCCCEEEEECC----EEEEeCCCCEEEE--ec-CCCCCCCcEEEEE
Confidence 46777777665211 35799999999999999943 7899999998763 23 5788899987765
No 88
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=89.25 E-value=0.23 Score=51.88 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=30.4
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|.||..|+|.++++++||.|..||+|++|+
T Consensus 650 ~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iE 681 (718)
T 3bg3_A 650 GQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLS 681 (718)
T ss_dssp SCEECSSCEEEEEECSCTTCCBCTTCCCEEEE
T ss_pred ceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEe
Confidence 46999999999999999999999999999987
No 89
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=89.20 E-value=0.26 Score=54.91 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=30.7
Q ss_pred CCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEE
Q 021721 249 GEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIV 287 (308)
Q Consensus 249 ~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~ 287 (308)
+...+|+.||.|++||+||.. +....+|.++++|+|.
T Consensus 1000 gs~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~ 1036 (1407)
T 3lu0_D 1000 GAVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVR 1036 (1407)
T ss_dssp TCEESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEE
T ss_pred CCEEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEE
Confidence 344789999999999999987 4567788899998775
No 90
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=88.32 E-value=0.32 Score=53.19 Aligned_cols=32 Identities=25% Similarity=0.475 Sum_probs=30.5
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|.||..|+|.+++|++||.|..||+|+.|+
T Consensus 1078 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ie 1109 (1150)
T 3hbl_A 1078 SHIGAQMPGSVTEVKVSVGETVKANQPLLITE 1109 (1150)
T ss_dssp SEEECSSSEEEEEECCCTTCEECTTCEEEEEE
T ss_pred ceeecCceEEEEEEEeCCCCEECCCCEEEEEE
Confidence 57999999999999999999999999999986
No 91
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=88.20 E-value=0.51 Score=41.79 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=18.3
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
++|++||+|++||.|+.+.-
T Consensus 120 ~~V~~Gd~Vk~Gd~L~~fD~ 139 (183)
T 3our_B 120 RIAEEGQTVKAGDTVIEFDL 139 (183)
T ss_dssp ECSCTTCEECTTCEEEEECH
T ss_pred EEEeCcCEEcCCCEEEEECH
Confidence 78999999999999999864
No 92
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=87.69 E-value=0.37 Score=53.12 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=30.2
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|.||..|+|.++++++||.|+.||+|+.||
T Consensus 1168 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iE 1199 (1236)
T 3va7_A 1168 ELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIE 1199 (1236)
T ss_dssp EEEECSSCEEEEEESSCTTCEECSSCEEEEEE
T ss_pred cEEeCCCcEEEEEEEcCCCCEECCCCEEEEEE
Confidence 35899999999999999999999999999986
No 93
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=87.46 E-value=0.11 Score=53.48 Aligned_cols=32 Identities=28% Similarity=0.494 Sum_probs=0.0
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|.||..|+|.++++++||.|+.||+|+.|+
T Consensus 603 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iE 634 (675)
T 3u9t_A 603 GGLSAPMNGSIVRVLVEPGQTVEAGATLVVLE 634 (675)
T ss_dssp --------------------------------
T ss_pred CeEECCCCEEEEEEEeCCCCEEcCCCEEEEEE
Confidence 45889999999999999999999999999986
No 94
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=87.11 E-value=0.13 Score=49.48 Aligned_cols=50 Identities=24% Similarity=0.211 Sum_probs=34.3
Q ss_pred CCCCC--ccCCCEEecCCEEEEEEecceeeEEecCCCeEEE------------------E----------EecCCCCccC
Q 021721 249 GEPPF--VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIV------------------E----------IIAEDRKPVS 298 (308)
Q Consensus 249 ~~~~~--VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~------------------e----------ilVe~Gd~V~ 298 (308)
+.-.. |+.|+.|+.||+|+ -...|-|+++|+|. + ++|.+||.|.
T Consensus 118 ga~l~~~v~~g~~v~~G~vla------k~~aiiaeidG~V~fg~~kr~i~i~~~~g~~~eylip~~~~k~~~v~~Gd~V~ 191 (352)
T 2xhc_A 118 SAGIEPGLRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVK 191 (352)
T ss_dssp GGCBCTTCCTTCEECTTCBSB------SSSSCBCCSCEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEEC
T ss_pred CcEEEEecCCCCEEccCcEEe------cCceEEeccceEEEECCcEEEEEEECCCCCEEEEEEcCCCCcCeeeCCCCEEe
Confidence 34456 89999999999887 22334444455443 2 2367889999
Q ss_pred CCCeEE
Q 021721 299 VDTPLF 304 (308)
Q Consensus 299 ~GqpL~ 304 (308)
.|++|.
T Consensus 192 ~G~~l~ 197 (352)
T 2xhc_A 192 QGEMLA 197 (352)
T ss_dssp TTCEEE
T ss_pred CCCCcc
Confidence 999886
No 95
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=85.81 E-value=0.54 Score=51.45 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=23.9
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|.||..|+|.++++++||.|..||+|+.|+
T Consensus 1096 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iE 1127 (1165)
T 2qf7_A 1096 AHVGAPMPGVISRVFVSSGQAVNAGDVLVSIE 1127 (1165)
T ss_dssp TEEECSSCEEEEEECCSSCCCC---CEEEEEE
T ss_pred ceeeCCCCeEEEEEEcCCcCEeCCCCEEEEEE
Confidence 45888888888888888888888888888875
No 96
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=84.64 E-value=0.56 Score=41.62 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=29.2
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecC--CEEEEEEe
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKG--QVLCIIEA 271 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkG--qvL~iIEa 271 (308)
..|+||+.|++.. .++++|+.|..| ++|+.|..
T Consensus 131 ~~I~AP~~G~V~~-------~~~~~G~~v~~g~~~~l~~i~~ 165 (277)
T 2f1m_A 131 TKVTSPISGRIGK-------SNVTEGALVQNGQATALATVQQ 165 (277)
T ss_dssp TEECCSSCEEECC-------CSSCBTCEECTTCSSCSEEEEE
T ss_pred CEEECCCCeEEEe-------EEcCCCCEEcCCCCceeEEEec
Confidence 5899999999998 789999999999 58888854
No 97
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=80.45 E-value=0.33 Score=47.50 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=0.0
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecc
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK 273 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK 273 (308)
..|.||..|++.+ ++|++||.|..||+|+.|+...
T Consensus 46 ~~i~ap~~G~v~~-------i~v~~G~~V~~G~~l~~i~~~~ 80 (428)
T 3dva_I 46 VEIPSPVKGKVLE-------ILVPEGTVATVGQTLITLDAPG 80 (428)
T ss_dssp ------------------------------------------
T ss_pred EEEecCCCeEEEE-------EEeCCCCEeCCCCEEEEEecCC
Confidence 5799999999998 8999999999999999998643
No 98
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=77.63 E-value=0.46 Score=42.92 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=0.0
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCE-EecCCEEEEEEe
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDR-VQKGQVLCIIEA 271 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~-VkkGqvL~iIEa 271 (308)
..|.+|..|++.+ .++++||. |..|++|++|+.
T Consensus 47 ~ei~Ap~~G~v~~-------i~v~~G~~~V~~G~~l~~i~~ 80 (229)
T 1zy8_K 47 VTLDASDDGILAK-------IVVEEGSKNIRLGSLIGLIVE 80 (229)
T ss_dssp -----------------------------------------
T ss_pred eEEecCCCeEEEE-------EEecCCCeeecCCCEEEEEec
Confidence 5789999999998 89999997 999999999974
No 99
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=74.16 E-value=1.3 Score=49.41 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=18.2
Q ss_pred CCCCCCccCCCEEecCCEEEEE
Q 021721 248 PGEPPFVKVGDRVQKGQVLCII 269 (308)
Q Consensus 248 p~~~~~VkvGD~VkkGqvL~iI 269 (308)
.+.-..|+.|+.|+.||+|+.|
T Consensus 1103 ~~a~~~v~~g~~v~~g~vlaki 1124 (1407)
T 3lu0_D 1103 GKAIVQLEDGVQISSGDTLARI 1124 (1407)
T ss_dssp TTCCCCCCSSCEECTTCEEECC
T ss_pred CCcEEEecCCCEeccCceEEec
Confidence 3444679999999999999976
No 100
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=72.00 E-value=3.2 Score=39.63 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=28.7
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 275 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 275 ~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..-|+||.+|.+. ..++.|+.|+.||+|++|.
T Consensus 290 ~~~v~A~~~Gl~~-~~v~lGd~V~kG~~la~I~ 321 (368)
T 3fmc_A 290 YRKFHAPKAGMVE-YLGKVGVPMKATDPLVNLL 321 (368)
T ss_dssp EEEEECSSCEEEE-ECSCTTCCBCTTCEEEEEE
T ss_pred cEEEecCCCEEEE-EeCCCCCEeCCCCEEEEEE
Confidence 4568999999887 8999999999999999985
No 101
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=64.32 E-value=5.1 Score=37.48 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=27.8
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 275 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 275 ~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..-|+||.+|.+. -.++.||.|+.||+|++|.
T Consensus 257 ~~~v~A~~~Gl~~-~~v~~Gd~V~~G~~la~I~ 288 (331)
T 3na6_A 257 DCYLFSEHDGLFE-IMIDLGEPVQEGDLVARVW 288 (331)
T ss_dssp CCCEECSSCEEEE-ESSCTTCEECTTCEEEEEE
T ss_pred cEEEeCCCCeEEE-EcCCCCCEEcCCCEEEEEE
Confidence 4568999999776 5799999999999999985
No 102
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=63.98 E-value=7.1 Score=38.95 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=32.0
Q ss_pred EEecceeeEEecCCCeEE-----------------------------EEEecCCCCccCCCCeEEEEc
Q 021721 269 IEAMKLMNEIEADRSGTI-----------------------------VEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 269 IEamK~~~eI~Ap~sGvV-----------------------------~eilVe~Gd~V~~GqpL~~Ie 307 (308)
+-..+...+|.|+.+|.| ..++++.||.|+.|++|++|.
T Consensus 366 l~~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i~ 433 (474)
T 1uou_A 366 LPRAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVH 433 (474)
T ss_dssp SCCCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEE
T ss_pred CCCCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEEE
Confidence 445667788888988888 346789999999999999984
No 103
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=61.73 E-value=4.8 Score=34.94 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=18.2
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
..|++||+|++||+|+.+-.
T Consensus 85 i~V~~G~~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 85 IQVSNGQQVSADTKLGVYAG 104 (182)
T ss_dssp CCCCTTCEECTTCEEEEECS
T ss_pred cccCCCCEEcCCCEEEeecC
Confidence 67999999999999999964
No 104
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=59.39 E-value=8.5 Score=36.15 Aligned_cols=34 Identities=18% Similarity=0.019 Sum_probs=28.0
Q ss_pred ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 273 KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 273 K~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
+-..-++|+.+|.+ +..++.|+.|+.||+|++|.
T Consensus 265 ~~~~~v~A~~~G~~-~~~~~~g~~V~~G~~La~i~ 298 (354)
T 3cdx_A 265 EADAYVMAPRTGLF-EPTHYVGEEVRTGETAGWIH 298 (354)
T ss_dssp CGGGEEECSSCEEE-EESCCTTCEECTTSEEEEEE
T ss_pred CCcEEEECCCCEEE-EEeCCCCCEeCCCCEEEEEE
Confidence 34456899999954 56789999999999999985
No 105
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=58.64 E-value=9.6 Score=37.48 Aligned_cols=20 Identities=15% Similarity=0.046 Sum_probs=17.2
Q ss_pred EEecCCCCccCCCCeEEEEc
Q 021721 288 EIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 288 eilVe~Gd~V~~GqpL~~Ie 307 (308)
.++.+.||.|+.|+||++|.
T Consensus 379 ~~~~k~g~~v~~g~~l~~i~ 398 (433)
T 1brw_A 379 VLHKKIGDRVQKGEALATIH 398 (433)
T ss_dssp EESCCTTCEECTTCEEEEEE
T ss_pred eEeccCCCEECCCCeEEEEE
Confidence 36778899999999999984
No 106
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=54.99 E-value=11 Score=37.03 Aligned_cols=20 Identities=10% Similarity=0.126 Sum_probs=17.2
Q ss_pred EEecCCCCccCCCCeEEEEc
Q 021721 288 EIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 288 eilVe~Gd~V~~GqpL~~Ie 307 (308)
.++.+.||.|+.|+||++|.
T Consensus 371 ~~~~k~g~~v~~g~~l~~i~ 390 (423)
T 2dsj_A 371 YLLKKPGDRVERGEALALVY 390 (423)
T ss_dssp EESCCTTCEECTTSEEEEEE
T ss_pred eeeccCCCEeCCCCeEEEEE
Confidence 36778899999999999984
No 107
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=50.98 E-value=7.3 Score=36.55 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=17.8
Q ss_pred CCCccCCCEEecCCEEEEEE
Q 021721 251 PPFVKVGDRVQKGQVLCIIE 270 (308)
Q Consensus 251 ~~~VkvGD~VkkGqvL~iIE 270 (308)
...|++||+|++||+|+.+-
T Consensus 250 ~~~V~~G~~V~~Gq~Ig~~G 269 (334)
T 3csq_A 250 PLPFDVGKKLKKGDLMGHTG 269 (334)
T ss_dssp SCCCCTTCEECTTSEEEECB
T ss_pred cccCCCcCEECCCCEEEeec
Confidence 46799999999999999874
No 108
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.00A {Chromobacterium violaceum} SCOP: c.56.5.7
Probab=50.80 E-value=2.5 Score=39.73 Aligned_cols=36 Identities=11% Similarity=-0.087 Sum_probs=25.8
Q ss_pred CCccCCCEEecCCEEEEEEec-----ceeeEEecCCCeEEE
Q 021721 252 PFVKVGDRVQKGQVLCIIEAM-----KLMNEIEADRSGTIV 287 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEam-----K~~~eI~Ap~sGvV~ 287 (308)
..++.|+.|++||+|+.+-.. ....+|.+|.+|+|.
T Consensus 277 ~~~~~g~~V~~G~~La~i~d~~~~~g~~~~~i~aP~~Gvv~ 317 (341)
T 1yw4_A 277 DSVENFTLLPDGMLIAEDGAVRYQATGGEERILFPNPAVKP 317 (341)
T ss_dssp TTCCBTEECCSSCCCC--------CCSSCCEEESCCTTCCS
T ss_pred ecCCCcCEeCCCCEEEEECCCceEeCCCceEEEeCCCCcee
Confidence 457999999999999988543 344579999999875
No 109
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=50.41 E-value=8.6 Score=37.90 Aligned_cols=38 Identities=29% Similarity=0.309 Sum_probs=29.1
Q ss_pred EecceeeEEecCCCeEEEE-------------------------------EecCCCCccCCCCeEEEEc
Q 021721 270 EAMKLMNEIEADRSGTIVE-------------------------------IIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 270 EamK~~~eI~Ap~sGvV~e-------------------------------ilVe~Gd~V~~GqpL~~Ie 307 (308)
-..+...+|.|+.+|.|.+ ++.+.||.|+.|+||++|.
T Consensus 335 ~~a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~ 403 (440)
T 2tpt_A 335 PTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIH 403 (440)
T ss_dssp CCCSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEE
T ss_pred CCCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEe
Confidence 3456667777777777743 5678899999999999984
No 110
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=49.29 E-value=7.3 Score=35.51 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=18.4
Q ss_pred CCccCCCEEecCCEEEEEEec
Q 021721 252 PFVKVGDRVQKGQVLCIIEAM 272 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEam 272 (308)
+.|++||.|++||+|+.+-..
T Consensus 135 i~Vk~Gd~V~~Gq~IG~vG~t 155 (245)
T 3tuf_B 135 VSVEQGDKVKQNQVIGKSGKN 155 (245)
T ss_dssp ESCCTTCEECTTCEEEECBCC
T ss_pred cccCCCCEECCCCEEEEeCCc
Confidence 679999999999999998653
No 111
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=47.97 E-value=28 Score=35.83 Aligned_cols=51 Identities=25% Similarity=0.492 Sum_probs=34.6
Q ss_pred CccCCCEEecCCEEEEEEecc-eeeEEec--CCCeEEEEEecCCCCccCCCCeEEEE
Q 021721 253 FVKVGDRVQKGQVLCIIEAMK-LMNEIEA--DRSGTIVEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 253 ~VkvGD~VkkGqvL~iIEamK-~~~eI~A--p~sGvV~eilVe~Gd~V~~GqpL~~I 306 (308)
.+++||.|..||+++.+.-.. +...|.. ...|+|+.| ..|+. ...++++.|
T Consensus 130 ~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i--~~g~~-~v~~~v~~i 183 (600)
T 3vr4_A 130 TIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKI--ESGSF-TIDDPICVI 183 (600)
T ss_dssp CSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE--CCEEE-CTTSCCEEE
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEe--cCCcc-eeceeEEEE
Confidence 489999999999999987544 3355533 368999987 66653 333343333
No 112
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=46.50 E-value=9.1 Score=34.85 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=17.4
Q ss_pred CccCCCEEecCCEEEEEEe
Q 021721 253 FVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 253 ~VkvGD~VkkGqvL~iIEa 271 (308)
.|++||.|++||+|+.+-.
T Consensus 183 ~V~~G~~V~~Gq~IG~vG~ 201 (252)
T 3nyy_A 183 ELEKGDPVKAGDLLGYMGD 201 (252)
T ss_dssp SCCTTCEECTTCEEEECBC
T ss_pred cCCCCCEECCCCEEEEECC
Confidence 7999999999999999853
No 113
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=46.37 E-value=20 Score=35.28 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=16.1
Q ss_pred EecCCCCccCCCCeEEEEc
Q 021721 289 IIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 289 ilVe~Gd~V~~GqpL~~Ie 307 (308)
++++.||.|+.|+||++|.
T Consensus 383 l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 383 LNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp ESCCTTCEECTTSEEEEEE
T ss_pred EecCCcCEeCCCCeEEEEe
Confidence 4567899999999999984
No 114
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=44.57 E-value=9.3 Score=35.38 Aligned_cols=20 Identities=40% Similarity=0.498 Sum_probs=17.3
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
..|++||.|++||+|+.+-.
T Consensus 232 i~V~~G~~V~~Gq~IG~vG~ 251 (282)
T 2hsi_A 232 IDVKLGQQVPRGGVLGKVGA 251 (282)
T ss_dssp ECSCTTCEECTTCEEEECCC
T ss_pred cccCCcCEECCCCEEEEECC
Confidence 57899999999999998754
No 115
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=44.39 E-value=12 Score=31.14 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=26.7
Q ss_pred eEEecCCCeEEEEEec-CCCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVEIIA-EDRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilV-e~Gd~V~~GqpL~~Ie 307 (308)
..+.++.-|.|..+.+ +.|+.|..|++|+.|+
T Consensus 37 t~~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VE 69 (136)
T 1zko_A 37 TNHAQEQLGDVVYVDLPEVGREVKKGEVVASIE 69 (136)
T ss_dssp CHHHHHHHCSEEEEECCCTTCEECTTCEEEEEE
T ss_pred EhhhcccCCCcEEEEecCCCCEEeCCCEEEEEE
Confidence 3456677788888877 9999999999999986
No 116
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=42.85 E-value=19 Score=33.20 Aligned_cols=31 Identities=10% Similarity=0.092 Sum_probs=27.0
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.-++|+..|.+. -.++.|+.|+.|++|++|.
T Consensus 258 ~~~~a~~~G~~~-~~~~~g~~V~~G~~la~i~ 288 (332)
T 2qj8_A 258 DQLKSPSPGIFE-PRCSVMDEVEQGDVVGVLH 288 (332)
T ss_dssp GEEECSSSEEEE-ECSCTTCEECTTCEEEEEE
T ss_pred eEEeCCCCeEEE-EeCCCCCEeCCCCEEEEEE
Confidence 357899999877 7799999999999999884
No 117
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=42.10 E-value=11 Score=35.44 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=17.8
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
..|++||.|++||+|+.+-.
T Consensus 239 i~Vk~Gq~V~~GqvIG~vG~ 258 (291)
T 1qwy_A 239 LTVSAGDKVKAGDQIAYSGS 258 (291)
T ss_dssp ECCCTTCEECTTCEEEECCC
T ss_pred cccCCcCEECCCCEEEEECC
Confidence 57999999999999998853
No 118
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=41.73 E-value=13 Score=30.66 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=26.8
Q ss_pred eEEecCCCeEEEEEec-CCCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVEIIA-EDRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilV-e~Gd~V~~GqpL~~Ie 307 (308)
.++..+.-|.|..+.+ +.|+.|..|++|+.|+
T Consensus 28 td~a~~~lG~i~~v~lp~~G~~V~~g~~l~~vE 60 (131)
T 1hpc_A 28 TDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVE 60 (131)
T ss_dssp CHHHHHHHCSEEEEECCCTTCEECBTSEEEEEE
T ss_pred ehhhcccCCCceEEEecCCCCEEeCCCEEEEEE
Confidence 4455677788988887 9999999999999986
No 119
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=41.02 E-value=14 Score=32.20 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=19.9
Q ss_pred CCCCCCCccCCCEEecCCEEEEEE
Q 021721 247 APGEPPFVKVGDRVQKGQVLCIIE 270 (308)
Q Consensus 247 ~p~~~~~VkvGD~VkkGqvL~iIE 270 (308)
+++.-..|+.|++|++||+|+.|-
T Consensus 163 P~ga~i~v~dG~~V~~GdvLArip 186 (190)
T 2auk_A 163 PGKAIVQLEDGVQISSGDTLARIP 186 (190)
T ss_dssp CTTCEESSCTTCEECTTCEEEEEE
T ss_pred CCCCEEEEcCCCEEcCCCEEEEcc
Confidence 345557799999999999999884
No 120
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=40.92 E-value=22 Score=32.91 Aligned_cols=20 Identities=15% Similarity=-0.044 Sum_probs=17.7
Q ss_pred EEEecCCCCccCCCCeEEEE
Q 021721 287 VEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 287 ~eilVe~Gd~V~~GqpL~~I 306 (308)
.++.|+.||.|..||.|..+
T Consensus 230 ~~i~V~~G~~V~~Gq~IG~v 249 (282)
T 2hsi_A 230 SKIDVKLGQQVPRGGVLGKV 249 (282)
T ss_dssp SEECSCTTCEECTTCEEEEC
T ss_pred CccccCCcCEECCCCEEEEE
Confidence 36789999999999999876
No 121
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=40.34 E-value=10 Score=37.43 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=17.9
Q ss_pred CCccCCCEEecCCEEEEEE
Q 021721 252 PFVKVGDRVQKGQVLCIIE 270 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIE 270 (308)
.++++||.|++||+|+.|=
T Consensus 383 l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 383 LNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp ESCCTTCEECTTSEEEEEE
T ss_pred EecCCcCEeCCCCeEEEEe
Confidence 7899999999999999996
No 122
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=39.50 E-value=14 Score=30.40 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=32.0
Q ss_pred ccceEeeecc-------cccccccc--------------chhhhhcchhhhcccccCCCceeEEE
Q 021721 56 CATVVKSQLN-------EVSFFQWF--------------SFEDIFSNFRSFLDSLLGTPVEFKVA 99 (308)
Q Consensus 56 ~~~~~~~~~~-------~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (308)
.+-.|||+|+ |+|=|.|= ++++|....+.+|-.|-..++.+|-.
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~Yk 83 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYR 83 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEE
T ss_pred ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCCcEEEEEE
Confidence 4678999995 99999993 77788887777777666555555443
No 123
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=39.16 E-value=26 Score=31.76 Aligned_cols=59 Identities=12% Similarity=0.132 Sum_probs=35.2
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 233 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 233 ~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.|.|+..|+|... .-.. .-|- +.+|+-..-..-+.+. +.++.|+.|+.|..||.|.++.
T Consensus 95 pV~A~~~G~V~~~-------g~~~----~~G~-~ViI~Hg~G~~t~Y~H----L~~i~Vk~Gd~V~~Gq~IG~vG 153 (245)
T 3tuf_B 95 DVSASLSGTVVKA-------EKDP----VLGY-VVEVEHADGLSTVYQS----LSEVSVEQGDKVKQNQVIGKSG 153 (245)
T ss_dssp EEECSSCEEEEEE-------EEET----TTEE-EEEEECSTTEEEEEEE----ESEESCCTTCEECTTCEEEECB
T ss_pred eEEeCcCeEEEEE-------EecC----CCce-EEEEEeCCCEEEEEec----CCccccCCCCEECCCCEEEEeC
Confidence 5777777777651 0000 1122 3345544433444433 3468899999999999999863
No 124
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=37.94 E-value=28 Score=34.19 Aligned_cols=42 Identities=31% Similarity=0.419 Sum_probs=31.1
Q ss_pred CCccCCcCeEEEcCC------------------------CCCCCCCccCCCEEecCCEEEEEEecc
Q 021721 232 PPLKCPMAGTFYRSP------------------------APGEPPFVKVGDRVQKGQVLCIIEAMK 273 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p------------------------~p~~~~~VkvGD~VkkGqvL~iIEamK 273 (308)
..|+|+..|.+.... .-+...++++||+|++||+|+.|=+.+
T Consensus 336 ~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 401 (433)
T 1brw_A 336 STVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp EEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred EEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEEcCC
Confidence 468888888885421 112227899999999999999997754
No 125
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=37.79 E-value=14 Score=34.90 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=17.7
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
..|++||.|++||+|+.+-.
T Consensus 284 ~~v~~G~~V~~G~~Ig~~G~ 303 (361)
T 2gu1_A 284 ILVKKGQLVKRGQKIALAGA 303 (361)
T ss_dssp ECCCTTCEECTTCEEEECCC
T ss_pred cccCCcCEECCCCEEEEECC
Confidence 56999999999999998854
No 126
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=37.65 E-value=29 Score=34.08 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=19.7
Q ss_pred CCccCCCEEecCCEEEEEEecc
Q 021721 252 PFVKVGDRVQKGQVLCIIEAMK 273 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEamK 273 (308)
.++++||+|++||+|+.|=+..
T Consensus 372 ~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 372 LLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp ESCCTTCEECTTSEEEEEEECS
T ss_pred eeccCCCEeCCCCeEEEEEeCC
Confidence 7899999999999999997653
No 127
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=36.87 E-value=15 Score=29.35 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=31.6
Q ss_pred cceEeeecc-------ccccccc--------------cchhhhhcchhhhcccccCCCceeEEE
Q 021721 57 ATVVKSQLN-------EVSFFQW--------------FSFEDIFSNFRSFLDSLLGTPVEFKVA 99 (308)
Q Consensus 57 ~~~~~~~~~-------~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (308)
+-.|||+|+ |+|=|.+ .++++|....+.+|-.|-...+.+|-.
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~ 68 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYR 68 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEE
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEE
Confidence 567999994 9999998 368888887777777666555555443
No 128
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=36.77 E-value=19 Score=29.52 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=26.0
Q ss_pred eEEecCCCeEEEEEec-CCCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVEIIA-EDRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilV-e~Gd~V~~GqpL~~Ie 307 (308)
.++..+.-|.|..+.+ +.|+.|..|++|+.|+
T Consensus 28 t~~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vE 60 (128)
T 1onl_A 28 TDYAQDALGDVVYVELPEVGRVVEKGEAVAVVE 60 (128)
T ss_dssp CHHHHHHHCSEEEEECBCTTCEECTTCEEEEEE
T ss_pred ehHHhhcCCCceEEEecCCCCEEeCCCEEEEEE
Confidence 3445566688888876 9999999999999986
No 129
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=36.28 E-value=18 Score=33.53 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=18.8
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|++++|+.|++||+|+.|+.
T Consensus 76 ~~~~dG~~v~~g~~v~~i~G 95 (286)
T 1x1o_A 76 PLVAEGARVAEGTEVARVRG 95 (286)
T ss_dssp ESSCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCCccCCCEEEEEEE
Confidence 78999999999999999985
No 130
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=36.06 E-value=20 Score=29.41 Aligned_cols=32 Identities=25% Similarity=0.145 Sum_probs=25.8
Q ss_pred eEEecCCCeEEEEEec-CCCCccCCCCeEEEEc
Q 021721 276 NEIEADRSGTIVEIIA-EDRKPVSVDTPLFVIE 307 (308)
Q Consensus 276 ~eI~Ap~sGvV~eilV-e~Gd~V~~GqpL~~Ie 307 (308)
.++..+.-|.|..+.+ +.|+.|..|++|+.|+
T Consensus 29 td~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vE 61 (128)
T 3a7l_A 29 TEHAQELLGDMVFVDLPEVGATVSAGDDCAVAE 61 (128)
T ss_dssp CHHHHHHHCSEEEEECCCTTCEECTTCEEEEEE
T ss_pred ehHHhccCCceEEEEecCCCCEEeCCCEEEEEE
Confidence 3445566687888876 9999999999999986
No 131
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=36.02 E-value=17 Score=33.73 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=18.8
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|++++|+.|++||+|+.|+.
T Consensus 75 ~~~~dG~~v~~g~~v~~i~G 94 (285)
T 1o4u_A 75 FNVEDGEYLEGTGVIGEIEG 94 (285)
T ss_dssp ESCCTTCEEESCEEEEEEEE
T ss_pred EEcCCCCCcCCCCEEEEEEE
Confidence 78999999999999999985
No 132
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=35.10 E-value=33 Score=34.15 Aligned_cols=42 Identities=24% Similarity=0.314 Sum_probs=30.7
Q ss_pred CCccCCcCeEEEcCC----------------------CCCCCCCccCCCEEecCCEEEEEEecc
Q 021721 232 PPLKCPMAGTFYRSP----------------------APGEPPFVKVGDRVQKGQVLCIIEAMK 273 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p----------------------~p~~~~~VkvGD~VkkGqvL~iIEamK 273 (308)
..|+|+..|.+.... .-+...++++||.|++||+|+.|=+.+
T Consensus 373 ~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i~~~~ 436 (474)
T 1uou_A 373 EELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVHRDG 436 (474)
T ss_dssp EEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEEESS
T ss_pred EEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEEEcCC
Confidence 467788888775321 223337899999999999999997653
No 133
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=34.61 E-value=12 Score=28.95 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=16.8
Q ss_pred CCCCCCCccCCCEEecCCEEE
Q 021721 247 APGEPPFVKVGDRVQKGQVLC 267 (308)
Q Consensus 247 ~p~~~~~VkvGD~VkkGqvL~ 267 (308)
+.+....|++||.|++||.|.
T Consensus 62 p~~~~l~V~eGd~V~~G~~Lt 82 (84)
T 2lmc_B 62 PKWRQLNVFEGERVERGDVIS 82 (84)
T ss_dssp CTTSCCSSCTTEEECBSCSSB
T ss_pred CCCCceEeCCCCEECCCCCcc
Confidence 455668899999999999763
No 134
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=34.33 E-value=18 Score=33.46 Aligned_cols=20 Identities=40% Similarity=0.519 Sum_probs=18.8
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|++++|+.|++||+|+.|+.
T Consensus 75 ~~~~dG~~v~~g~~v~~i~G 94 (284)
T 1qpo_A 75 DRVEDGARVPPGEALMTLEA 94 (284)
T ss_dssp EECCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCEecCCcEEEEEEE
Confidence 78999999999999999985
No 135
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=33.80 E-value=30 Score=30.16 Aligned_cols=41 Identities=22% Similarity=0.065 Sum_probs=31.7
Q ss_pred CCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 256 VGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 256 vGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
.|-.+++|+-||.+++. |..+-+.+..|+.|..|+.|+.|.
T Consensus 92 ~~~~lkkGt~L~lvpae-----------G~~V~~i~~~G~rV~kgd~lA~i~ 132 (169)
T 3d4r_A 92 TLTYLKAGTKLISVPAE-----------GYKVYPIMDFGFRVLKGYRLATLE 132 (169)
T ss_dssp EEEEECTTCBCEEEEEC-----------SSEEEECCCCSEEECTTCEEEEEE
T ss_pred EEEEEcCCCEEEEEEeC-----------ceEEEEEcCcCcEeccCCeEEEEE
Confidence 44457888888888764 445557788999999999999874
No 136
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=33.60 E-value=21 Score=33.34 Aligned_cols=20 Identities=5% Similarity=0.036 Sum_probs=18.9
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|++++|+.|++||+|+.|+.
T Consensus 79 ~~~~dG~~v~~g~~v~~i~G 98 (287)
T 3tqv_A 79 WLYSDAQKVPANARIFELKG 98 (287)
T ss_dssp ESSCTTCEECTTCEEEEEEE
T ss_pred EEeCCCCEeeCCCEEEEEEE
Confidence 78999999999999999985
No 137
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=33.01 E-value=15 Score=36.28 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=31.0
Q ss_pred CCccCCcCeEEEcCC------------------------CCCCCCCccCCCEEecCCEEEEEEecc
Q 021721 232 PPLKCPMAGTFYRSP------------------------APGEPPFVKVGDRVQKGQVLCIIEAMK 273 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p------------------------~p~~~~~VkvGD~VkkGqvL~iIEamK 273 (308)
..|+|+..|.+.... .-+...++++||+|++||+|+.|=+.+
T Consensus 341 ~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 341 KAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKD 406 (440)
T ss_dssp EEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEEESS
T ss_pred EEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEecCC
Confidence 468888888875421 122227899999999999999997653
No 138
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=32.05 E-value=23 Score=33.39 Aligned_cols=20 Identities=35% Similarity=0.190 Sum_probs=18.9
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|++++|+.|++||+|+.|+.
T Consensus 88 ~~~~dG~~v~~g~~v~~i~G 107 (300)
T 3l0g_A 88 IHKKDGDITGKNSTLVSGEA 107 (300)
T ss_dssp ECCCTTCEECSSCEEEEEEE
T ss_pred EEeCCCCEeeCCCEEEEEEE
Confidence 89999999999999999985
No 139
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=29.99 E-value=35 Score=29.39 Aligned_cols=55 Identities=18% Similarity=0.016 Sum_probs=37.5
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021721 232 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 307 (308)
Q Consensus 232 ~~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~eilVe~Gd~V~~GqpL~~Ie 307 (308)
..|.|+..|++... . |.. .+|+-..-..-+.+- +.++.|+.||.|..||.|..+.
T Consensus 49 tpV~A~~~G~V~~~---------~-------G~~-V~I~H~~g~~t~Y~H----L~~i~V~~G~~V~~Gq~IG~vG 103 (182)
T 3it5_A 49 YSVVAAHAGTVRVL---------S-------RCQ-VRVTHPSGWATNYYH----MDQIQVSNGQQVSADTKLGVYA 103 (182)
T ss_dssp CEEECSSSEEEEEE---------E-------TTE-EEEECTTSEEEEEES----EESCCCCTTCEECTTCEEEEEC
T ss_pred CEEEeccCEEEEEE---------C-------CeE-EEEEECCcEEEEEEc----CCccccCCCCEEcCCCEEEeec
Confidence 47889999988762 1 333 345555434444444 3357799999999999999863
No 140
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=29.13 E-value=29 Score=32.55 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=18.9
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|++++|+.|++||+|+.|+.
T Consensus 90 ~~~~dG~~v~~g~~l~~v~G 109 (298)
T 3gnn_A 90 WRHREGDRMSADSTVCELRG 109 (298)
T ss_dssp ESSCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCEecCCCEEEEEEe
Confidence 78999999999999999985
No 141
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=28.42 E-value=28 Score=31.73 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=18.6
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|.+++|+.|.+|++|+.|+.
T Consensus 62 ~~~~eG~~v~~g~~~~~v~G 81 (273)
T 2b7n_A 62 QTIKDKERFKPKDALMEIRG 81 (273)
T ss_dssp EECCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCCcCCCCEEEEEEe
Confidence 67999999999999999985
No 142
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=28.22 E-value=30 Score=32.74 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=18.9
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|++++|+.|.+||+|+.|+.
T Consensus 112 ~~~~dG~~v~~g~~l~~v~G 131 (320)
T 3paj_A 112 WHVQDGDTLTPNQTLCTLTG 131 (320)
T ss_dssp ESSCTTCEECTTCEEEEEEE
T ss_pred EEeCCCCEecCCCEEEEEEe
Confidence 78999999999999999985
No 143
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=28.00 E-value=31 Score=32.00 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=18.9
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|++++|+.|.+|++|+.|+.
T Consensus 89 ~~~~dG~~v~~g~~~~~v~G 108 (296)
T 1qap_A 89 WHVDDGDAIHANQTVFELQG 108 (296)
T ss_dssp ESCCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCEecCCCEEEEEEE
Confidence 78999999999999999985
No 144
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=27.76 E-value=48 Score=30.01 Aligned_cols=58 Identities=17% Similarity=-0.016 Sum_probs=35.9
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecceeeEEecCCCeEEEEE-ecCCCCccCCCCeEEEE
Q 021721 233 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEI-IAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 233 ~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGvV~ei-lVe~Gd~V~~GqpL~~I 306 (308)
.|.|+..|++.... -..| -|- ..+|+...-..-+.+. +.++ .|+.||.|..||+|..+
T Consensus 141 pV~A~~~G~V~~~g-------~~~~----~G~-~V~I~H~~G~~t~Y~H----L~~~~~V~~G~~V~~Gq~IG~v 199 (252)
T 3nyy_A 141 PVVSMTDGVVTEKG-------WLEK----GGW-RIGITAPTGAYFYYAH----LDSYAELEKGDPVKAGDLLGYM 199 (252)
T ss_dssp EEECSSCEEEEEEE-------EETT----TEE-EEEEECTTSCEEEEEE----ESEECSCCTTCEECTTCEEEEC
T ss_pred eEEeccCEEEEEEE-------ecCC----CCC-EEEEEeCCcEEEEEee----CCCCCcCCCCCEECCCCEEEEE
Confidence 68999999987621 0001 122 3345544433334444 3345 89999999999999986
No 145
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=25.28 E-value=33 Score=31.77 Aligned_cols=20 Identities=10% Similarity=0.150 Sum_probs=18.6
Q ss_pred CCccCCCEEecCCEEEEEEe
Q 021721 252 PFVKVGDRVQKGQVLCIIEA 271 (308)
Q Consensus 252 ~~VkvGD~VkkGqvL~iIEa 271 (308)
|.+++|+.|.+|++|+.|+.
T Consensus 75 ~~~~dG~~v~~g~~l~~v~G 94 (299)
T 2jbm_A 75 WFLPEGSKLVPVARVAEVRG 94 (299)
T ss_dssp ESSCTTCEECSSEEEEEEEE
T ss_pred EEcCCCCCCCCCCEEEEEEE
Confidence 68999999999999999985
No 146
>2qzb_A Uncharacterized protein YFEY; structural genomics, unknown function, PSI-2, protein struct initiative; 2.10A {Escherichia coli}
Probab=24.98 E-value=46 Score=28.94 Aligned_cols=53 Identities=25% Similarity=0.384 Sum_probs=40.6
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCEEEEEEecc---eeeEEecCCCeEEEEEecCCCCc
Q 021721 233 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK---LMNEIEADRSGTIVEIIAEDRKP 296 (308)
Q Consensus 233 ~V~APm~Gt~~r~p~p~~~~~VkvGD~VkkGqvL~iIEamK---~~~eI~Ap~sGvV~eilVe~Gd~ 296 (308)
.|++-..|.+. ++.|-+-..|+++-++++|| +.++|.. -.|+|.+|.|.+++.
T Consensus 34 aI~~~L~g~y~----------lrsGm~t~~G~~v~~~qA~~~d~v~lvi~G-~~g~V~rI~V~d~~i 89 (166)
T 2qzb_A 34 AIADALDGDYR----------LRSGMKTANGNVVRFFEVMKGDNVAMVING-DQGTISRIDVLDSDI 89 (166)
T ss_dssp HHHHHCCSSCE----------EEEEEEEETTEEEEEEEEEETTEEEEEEEC---CBCCEEEECCTTC
T ss_pred HHHhhcCCCcE----------EeeceecCCCCEEEeeeeecCCcEEEEEEC-CCCcEEEEEEeCCCC
Confidence 35555666543 58899999999999998876 7777778 889999999998886
No 147
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=23.75 E-value=1.1e+02 Score=31.36 Aligned_cols=37 Identities=32% Similarity=0.541 Sum_probs=27.6
Q ss_pred CccCCCEEecCCEEEEEEecceeeEE--ecCCCeEEEEE
Q 021721 253 FVKVGDRVQKGQVLCIIEAMKLMNEI--EADRSGTIVEI 289 (308)
Q Consensus 253 ~VkvGD~VkkGqvL~iIEamK~~~eI--~Ap~sGvV~ei 289 (308)
.+++||.|..||+++.+.-......| .-.+.|+|.++
T Consensus 122 ~~~~g~~v~~G~i~g~v~e~~~ih~i~~pp~~~g~v~~i 160 (578)
T 3gqb_A 122 MVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEV 160 (578)
T ss_dssp CCCTTCEECTTCEEEEEEETTEEEEEECCTTCCEEEEEE
T ss_pred ccccCccccccceeeeecccccceecccCCCcCceeEEe
Confidence 58999999999999998654433544 23467888875
No 148
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=23.60 E-value=72 Score=29.84 Aligned_cols=20 Identities=5% Similarity=0.009 Sum_probs=17.7
Q ss_pred EEEecCCCCccCCCCeEEEE
Q 021721 287 VEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 287 ~eilVe~Gd~V~~GqpL~~I 306 (308)
.++.|+.||.|..||+|..+
T Consensus 237 s~i~Vk~Gq~V~~GqvIG~v 256 (291)
T 1qwy_A 237 NRLTVSAGDKVKAGDQIAYS 256 (291)
T ss_dssp SEECCCTTCEECTTCEEEEC
T ss_pred CccccCCcCEECCCCEEEEE
Confidence 35789999999999999976
No 149
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=23.57 E-value=68 Score=29.89 Aligned_cols=19 Identities=5% Similarity=-0.141 Sum_probs=16.6
Q ss_pred EEecCCCCccCCCCeEEEE
Q 021721 288 EIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 288 eilVe~Gd~V~~GqpL~~I 306 (308)
++.|+.||.|..||.|..+
T Consensus 250 ~~~V~~G~~V~~Gq~Ig~~ 268 (334)
T 3csq_A 250 PLPFDVGKKLKKGDLMGHT 268 (334)
T ss_dssp SCCCCTTCEECTTSEEEEC
T ss_pred cccCCCcCEECCCCEEEee
Confidence 3579999999999999876
No 150
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=21.86 E-value=1.1e+02 Score=31.29 Aligned_cols=37 Identities=32% Similarity=0.519 Sum_probs=26.8
Q ss_pred CccCCCEEecCCEEEEEEecc-eeeEEe--cCCCeEEEEE
Q 021721 253 FVKVGDRVQKGQVLCIIEAMK-LMNEIE--ADRSGTIVEI 289 (308)
Q Consensus 253 ~VkvGD~VkkGqvL~iIEamK-~~~eI~--Ap~sGvV~ei 289 (308)
.+++||.|..||+++.|.-.. ....|. -...|+|..+
T Consensus 123 ~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g~v~~i 162 (588)
T 3mfy_A 123 KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEI 162 (588)
T ss_dssp CCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE
T ss_pred ccccCcccccCceEEEEecccceeeeeecCCCCCceEEEe
Confidence 589999999999999986543 334442 3367888765
No 151
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=20.41 E-value=1.1e+02 Score=28.70 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=17.6
Q ss_pred EEEecCCCCccCCCCeEEEE
Q 021721 287 VEIIAEDRKPVSVDTPLFVI 306 (308)
Q Consensus 287 ~eilVe~Gd~V~~GqpL~~I 306 (308)
.++.|+.|+.|..||+|..+
T Consensus 282 ~~~~v~~G~~V~~G~~Ig~~ 301 (361)
T 2gu1_A 282 DKILVKKGQLVKRGQKIALA 301 (361)
T ss_dssp SEECCCTTCEECTTCEEEEC
T ss_pred CccccCCcCEECCCCEEEEE
Confidence 34789999999999999976
Done!