Query 021722
Match_columns 308
No_of_seqs 122 out of 519
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 08:20:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021722.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021722hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t5v_A Nuclear mRNA export pro 100.0 6.4E-64 2.2E-68 466.5 28.2 257 21-292 2-278 (316)
2 4b0z_A RPN12, 26S proteasome r 100.0 2.8E-28 9.5E-33 217.8 20.2 205 37-278 11-227 (229)
3 4b4t_T 26S proteasome regulato 100.0 1.5E-27 5.1E-32 218.1 16.3 197 54-278 19-236 (274)
4 1rz4_A Eukaryotic translation 98.9 2.7E-08 9.2E-13 88.0 14.8 167 76-277 22-189 (226)
5 3txn_A 26S proteasome regulato 96.3 0.058 2E-06 51.1 13.5 150 142-299 220-384 (394)
6 4b4t_O 26S proteasome regulato 93.5 1 3.4E-05 42.3 13.1 101 175-277 242-350 (393)
7 4b4t_R RPN7, 26S proteasome re 93.3 0.22 7.7E-06 47.3 8.3 94 178-275 283-387 (429)
8 3t5x_A PCI domain-containing p 93.3 0.32 1.1E-05 41.5 8.4 98 186-284 85-196 (203)
9 3chm_A COP9 signalosome comple 87.2 2.1 7.1E-05 35.5 7.7 79 181-267 59-142 (169)
10 4b4t_Q 26S proteasome regulato 86.0 19 0.00065 32.3 16.2 83 177-262 292-379 (434)
11 3t5v_B Nuclear mRNA export pro 83.6 5.4 0.00019 38.2 9.8 73 179-251 293-374 (455)
12 1ufm_A COP9 complex subunit 4; 77.4 3.5 0.00012 30.0 4.8 39 221-262 15-53 (84)
13 4b4t_P 26S proteasome regulato 73.8 41 0.0014 31.6 12.7 81 179-262 291-382 (445)
14 3e21_A HFAF1, FAS-associated f 73.1 3.3 0.00011 26.5 3.2 27 242-268 9-36 (45)
15 4b4t_S RPN3, 26S proteasome re 60.1 12 0.00042 36.4 5.8 72 185-259 346-422 (523)
16 2jya_A AGR_C_3324P, uncharacte 56.1 5.8 0.0002 30.2 2.2 22 248-269 55-77 (106)
17 2heo_A Z-DNA binding protein 1 49.9 36 0.0012 23.0 5.4 43 222-267 11-56 (67)
18 2lju_A Putative oxidoreductase 46.6 7.4 0.00025 29.7 1.4 22 248-269 63-85 (108)
19 2k9s_A Arabinose operon regula 44.4 53 0.0018 23.8 6.0 45 218-267 52-99 (107)
20 3oio_A Transcriptional regulat 43.5 53 0.0018 24.1 6.0 46 218-268 55-103 (113)
21 3oou_A LIN2118 protein; protei 42.1 54 0.0018 23.8 5.8 44 219-267 54-100 (108)
22 3f2g_A Alkylmercury lyase; MER 39.0 66 0.0023 27.6 6.4 50 221-275 22-71 (220)
23 1bl0_A Protein (multiple antib 34.5 85 0.0029 23.6 6.0 46 218-268 59-107 (129)
24 1z96_A DNA-damage, UBA-domain 32.1 31 0.001 20.5 2.4 25 242-267 8-32 (40)
25 1nd9_A Translation initiation 31.8 37 0.0013 21.0 2.9 26 240-265 3-28 (49)
26 3mn2_A Probable ARAC family tr 30.6 1.4E+02 0.0049 21.3 6.5 47 218-267 50-99 (108)
27 3mkl_A HTH-type transcriptiona 28.0 1.4E+02 0.0048 21.9 6.2 46 218-268 54-102 (120)
28 3lsg_A Two-component response 26.5 1.5E+02 0.005 21.0 5.9 45 218-267 51-98 (103)
29 1v92_A NSFL1 cofactor P47; 3-h 26.1 59 0.002 19.9 3.1 27 242-268 9-35 (46)
30 1gp8_A Protein (scaffolding pr 24.8 74 0.0025 19.5 3.0 28 58-85 6-34 (40)
31 2htj_A P fimbrial regulatory p 24.2 1.7E+02 0.0059 19.8 5.7 41 223-267 2-45 (81)
32 2y75_A HTH-type transcriptiona 22.5 2E+02 0.007 21.4 6.2 43 226-269 14-59 (129)
33 3lsg_A Two-component response 22.3 1.7E+02 0.0057 20.7 5.5 42 225-267 6-48 (103)
34 2k9s_A Arabinose operon regula 21.7 1.5E+02 0.0051 21.2 5.1 43 225-268 7-50 (107)
35 1ng7_A Poliovirus 3A-N, genome 21.1 20 0.00067 24.4 -0.1 27 241-267 18-45 (60)
36 1d5y_A ROB transcription facto 20.9 1.7E+02 0.0059 24.8 6.2 46 218-268 51-99 (292)
No 1
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-64 Score=466.48 Aligned_cols=257 Identities=26% Similarity=0.389 Sum_probs=220.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcCCCCCcchhhhhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhc
Q 021722 21 EVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSS 100 (308)
Q Consensus 21 ~~~P~~vRp~~vL~kT~~yL~~~~~~~~~~~~~~y~Fi~DRlRaIRQDl~vQ~i~~~~~v~vlE~~~Rf~i~~~~~l~~~ 100 (308)
+|+|++||||+||++||+||++++... +..+|+|+|||||||||||||||+.++++|.|||+|+||||++.|+||..
T Consensus 2 ~P~P~~vRP~~vL~~Tl~yL~~~~~~~---~~~~y~fi~Dr~RsIRqDltvQ~i~~~~~v~v~E~~aRf~i~~~~~L~~~ 78 (316)
T 3t5v_A 2 SPLPSDVRPPHILVKTLDYIVDNLLTT---LPESEGFLWDRMRSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVKS 78 (316)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHTGGG---TTTCHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCChhhcCCHHHHHHHHHHHHHHHHhc---chhhhHHHHhhhhhhccCceeeccCCchHHHHHHHHHHHHHHHHHHHhhC
Confidence 578999999999999999999988653 44689999999999999999999999999999999999999999999976
Q ss_pred CCCCCCChhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhcCCCCchhhhHHHHhhhCChhhhcCHh
Q 021722 101 CSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKE 180 (308)
Q Consensus 101 ~~~~~f~~~~~~n~~ql~~cl~~L~~lY~~~~~~~~~~~ne~Ef~~Y~iL~~l~~~~~~~~~~l~~~l~~l~~~i~~s~~ 180 (308)
+. +|+ +++|.+|+++||++|+++|++.++.|+.++||+||+||+||+++++.+ +...+..+|++++++|.
T Consensus 79 ~~--~f~--~~~~~eQl~~~L~sL~~lY~d~~~~~~~~~ne~EF~aY~lL~~l~~~~------~~~~l~~Lp~~i~~~p~ 148 (316)
T 3t5v_A 79 NV--EFS--LQQELEQLHKSLITLSEIYDDVRSSGGTCPNEAEFRAYALLSKIRDPQ------YDENIQRLPKHIFQDKL 148 (316)
T ss_dssp CC--CCC--HHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHSTTCTH------HHHHHTTSCHHHHTSHH
T ss_pred CC--ccc--hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhccch------HHHHHHhCCHHHhcCHH
Confidence 43 564 789999999999999999999988788899999999999999998753 22356789999999999
Q ss_pred HHHHHHHHHHHH---------------hCCHHHHHHHHHh-cccHHHHHHHhHhHHHHHHHHHHHHHhhhcC--CCCcCH
Q 021722 181 MWFARQALRYFQ---------------MGNYRRFLSTVAA-EASYLQYCIIEPYIDEVRSLALCCIHNCCYK--LHPYPL 242 (308)
Q Consensus 181 v~~Al~v~~a~~---------------~~Ny~rfFkLl~~-~~~~L~~cl~~~~~~~vR~~aL~~i~~a~yk--~~~ipl 242 (308)
||+|+++.+|+. .|||++||+++++ ++|||++|+|+.||+++|..||++|++ +|+ ..++|+
T Consensus 149 Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~AL~~i~k-ay~~k~~~~pl 227 (316)
T 3t5v_A 149 VQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSH-TLNKKHKPIPF 227 (316)
T ss_dssp HHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHHHHHHHH-HSCTTCCCEEH
T ss_pred HHHHHHHHHHHHhcccccccccccccccchHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHH-HhccCCCCcCH
Confidence 999999999986 4899999998753 389999999999999999999999999 574 247999
Q ss_pred HHHHHHhcCCc-hHHHHHHHHhCCeecccCCCccc-ccCCCCcccCCCCCCc
Q 021722 243 GHLSKVLMMEE-SDVELFCNAYGLQTCIDEVGNKL-LPTKQTTFCRPKGGLQ 292 (308)
Q Consensus 243 ~~L~~~L~f~~-~e~~~f~~~~Gl~~~~d~~g~~~-l~~k~~~f~~~~~~~~ 292 (308)
++|+++|+|++ +|+.+||++|||+++++ +|... ..+.++.|.+++..+.
T Consensus 228 ~~L~~~L~Fds~ee~~~F~~~~gl~~~~~-~~~~~~~~~~~~~~~~~~~p~~ 278 (316)
T 3t5v_A 228 IYLENMLLFNNRQEIIEFCNYYSIEIING-DAADLKTLQHYSHKLSETQPLK 278 (316)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHTTCCEETT-TEECGGGCCCSSSSCTTSCCCC
T ss_pred HHHHHHhCCCCHHHHHHHHHHCCCeEeCC-CCchHHhhcchhccccccCCCc
Confidence 99999999985 78999999999999753 34332 2456677776665444
No 2
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=99.96 E-value=2.8e-28 Score=217.76 Aligned_cols=205 Identities=17% Similarity=0.229 Sum_probs=166.7
Q ss_pred HHHHHHHHcCCCCCcchhhhhhhhhhhhhhhhhhhhhcC--------CchhHHHHHHHHHHHHHHHhhhhhcCCCCCCCh
Q 021722 37 LNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIV--------NDKAINMFEKIVKFHVISHHKLRSSCSSSSISP 108 (308)
Q Consensus 37 ~~yL~~~~~~~~~~~~~~y~Fi~DRlRaIRQDl~vQ~i~--------~~~~v~vlE~~~Rf~i~~~~~l~~~~~~~~f~~ 108 (308)
++.|.+.+..+ .|+.+++.++.||+||+.|++. ...|..|||..+|..| +.
T Consensus 11 l~~L~~~~~~~------d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al--------~~------- 69 (229)
T 4b0z_A 11 LNHLADLYDRK------DWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSI--------QT------- 69 (229)
T ss_dssp SHHHHHHHHTT------CHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHH--------HT-------
T ss_pred HHHHHHHHHhc------cHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHH--------Hc-------
Confidence 34555556543 5899999999999999999984 2368999999555444 32
Q ss_pred hhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhcCCCCchhhhHHHHhhhCChh--hhcCHhHHHHHH
Q 021722 109 LHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSP--IIKSKEMWFARQ 186 (308)
Q Consensus 109 ~~~~n~~ql~~cl~~L~~lY~~~~~~~~~~~ne~Ef~~Y~iL~~l~~~~~~~~~~l~~~l~~l~~~--i~~s~~v~~Al~ 186 (308)
.|.++|++|+++|+.+|.+.. ..++++.||.+|+||+.|..++. .+ +...+..+|++ +.++|.|++|++
T Consensus 70 ---~D~~~F~~~~~qLk~~Y~~~~---~~s~~~~e~~~~~LL~lL~~~~~--~e-f~~~le~l~~~~~~~~~~~I~~al~ 140 (229)
T 4b0z_A 70 ---CDIESFARYASQVIPFYHDSL---VPSSRMGLVTGLNLLYLLSENRI--AE-FHTALESVPDKSLFERDPYVEWVIS 140 (229)
T ss_dssp ---TCHHHHHHHHHHHHHHHSSCC---CCCTTHHHHHHHHHHHHHHTTCH--HH-HHHHHHHCSCTTHHHHCHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHccC---CCCccHHHHHHHHHHHHHHcCCc--hH-HHHHHHhcChHHHhhcCHHHHHHHH
Confidence 268999999999999998743 34789999999999998866542 22 34456677754 578999999999
Q ss_pred HHHHHHhCCHHHHHHHHHhccc-HHHHHHHhHhHHHHHHHHHHHHHhhhcCCCCcCHHHHHHHhcCCc-hHHHHHHHHhC
Q 021722 187 ALRYFQMGNYRRFLSTVAAEAS-YLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEE-SDVELFCNAYG 264 (308)
Q Consensus 187 v~~a~~~~Ny~rfFkLl~~~~~-~L~~cl~~~~~~~vR~~aL~~i~~a~yk~~~ipl~~L~~~L~f~~-~e~~~f~~~~G 264 (308)
|.+|++.|||.+||+++. ++| ...+|+|+.+++++|..|+..|.+ +|. .||+++++++|+|++ +|+.+||+++|
T Consensus 141 l~~al~~GnY~kff~l~~-~~p~~~~~~~~~~l~~~vR~~~l~~i~k-aY~--~i~l~~~~~~L~f~s~~e~~~f~~~~g 216 (229)
T 4b0z_A 141 LEQNVMEGAFDKVASMIR-SCNFPEFSYFMKIVMSMVRNEIATCAEK-VYS--EIPLSNATSLLYLENTKETEKLAEERG 216 (229)
T ss_dssp HHHHHHTTCHHHHHHHHH-TCCCGGGHHHHHHHHHHHHHHHHHHHHH-HCS--EEEHHHHHHHTTCSSHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHh-cCccchHHHHHHHHHHHHHHHHHHHHHH-HcC--CCCHHHHHHHhCCCCHHHHHHHHHHcC
Confidence 999999999999999764 666 456999999999999999999998 685 699999999999985 78999999999
Q ss_pred CeecccCCCccccc
Q 021722 265 LQTCIDEVGNKLLP 278 (308)
Q Consensus 265 l~~~~d~~g~~~l~ 278 (308)
|++. +|.++.+
T Consensus 217 w~i~---dg~i~F~ 227 (229)
T 4b0z_A 217 WDIR---DGVIYFP 227 (229)
T ss_dssp CEEE---TTEEECC
T ss_pred CEEe---CCEEecC
Confidence 9994 5665543
No 3
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.5e-27 Score=218.10 Aligned_cols=197 Identities=12% Similarity=0.145 Sum_probs=139.1
Q ss_pred hhhhhhhhhhhhhhhhhhhhcCCc--------------hhHHHHHHHHHHHHHHHhhhhhcCCCCCCChhhhhcHHHHHH
Q 021722 54 IHDFVFDRTRSVRQDLIMQNIVND--------------KAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTK 119 (308)
Q Consensus 54 ~y~Fi~DRlRaIRQDl~vQ~i~~~--------------~~v~vlE~~~Rf~i~~~~~l~~~~~~~~f~~~~~~n~~ql~~ 119 (308)
.|+.+.+.|..++++|+.|++-.+ .+.+|||. +++++.+. .|+++|++
T Consensus 19 d~~~~~~lL~~lK~~L~~~~~l~p~~~~~~~~~~~el~~ar~v~E~--------~a~~si~~----------~D~~~F~~ 80 (274)
T 4b4t_T 19 DYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEV--------GALASIQT----------FNFDSFEN 80 (274)
T ss_dssp ------------------------------------------CHHH--------HHHCCSSC----------SSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCcCCCCCCcchhHHHHHHHHHHHHHH--------HHHHHHHc----------CCHHHHHH
Confidence 578899999999999999887321 35689999 55555443 37899999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhcCCCC-chhhhHHHHhhhCC---hhhhcCHhHHHHHHHHHHHHhCC
Q 021722 120 ALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQ-PVGESLSLWFRHVP---SPIIKSKEMWFARQALRYFQMGN 195 (308)
Q Consensus 120 cl~~L~~lY~~~~~~~~~~~ne~Ef~~Y~iL~~l~~~~~-~~~~~l~~~l~~l~---~~i~~s~~v~~Al~v~~a~~~~N 195 (308)
|+++|+.+|.+.+.....++|+.||.||+||+.+..+.. .+. .-+..+| +++.++|.|++|++|.++++.||
T Consensus 81 ~~~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh----~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGn 156 (274)
T 4b4t_T 81 YFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTTKFH----SELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGS 156 (274)
T ss_dssp HHHHHHHHTTTTSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHH----HHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhccCCCCccHHHHHHHHHHHHHHcCCHHHHH----HHHHhcchhhHhHhcChHHHHHHHHHHHHHcCC
Confidence 999999999988766567889999999999998754332 222 2345566 46788999999999999999999
Q ss_pred HHHHHHHHHh--cccHHHHHHHhHhHHHHHHHHHHHHHhhhcCCCCcCHHHHHHHhcCCc-hHHHHHHHHhCCeecccCC
Q 021722 196 YRRFLSTVAA--EASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEE-SDVELFCNAYGLQTCIDEV 272 (308)
Q Consensus 196 y~rfFkLl~~--~~~~L~~cl~~~~~~~vR~~aL~~i~~a~yk~~~ipl~~L~~~L~f~~-~e~~~f~~~~Gl~~~~d~~ 272 (308)
|.+||+++.+ ..+++.+|+|+.+++++|..|+..|.+ +|. ++|+++++++|+|++ +|+.+|++++||++. +
T Consensus 157 Y~kff~l~~~~~~p~~~~~~f~d~l~~~iR~~a~~~i~k-aY~--~i~l~~~~~~L~F~s~~e~~~F~~~~gW~~~---~ 230 (274)
T 4b4t_T 157 YQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTEL-SYD--FLPLSNIKALLFFNNEKETEKFALERNWPIV---N 230 (274)
T ss_dssp SHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH-HCS--SCCHHHHHHHHTCCSHHHHHHHHHHTTCCCC---S
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHh--hcCHHHHHHHhCCCCHHHHHHHHHHcCCEEe---C
Confidence 9999998754 235788999999999999999999999 696 699999999999996 789999999999994 3
Q ss_pred Cccccc
Q 021722 273 GNKLLP 278 (308)
Q Consensus 273 g~~~l~ 278 (308)
|.++.+
T Consensus 231 ~~v~F~ 236 (274)
T 4b4t_T 231 SKVYFN 236 (274)
T ss_dssp SCCCC-
T ss_pred CEeEEC
Confidence 555543
No 4
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=98.91 E-value=2.7e-08 Score=87.98 Aligned_cols=167 Identities=16% Similarity=0.190 Sum_probs=115.0
Q ss_pred CchhHHHHHHHHHHHHHHHhhhhhcCCCCCCChhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhcC
Q 021722 76 NDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDS 155 (308)
Q Consensus 76 ~~~~v~vlE~~~Rf~i~~~~~l~~~~~~~~f~~~~~~n~~ql~~cl~~L~~lY~~~~~~~~~~~ne~Ef~~Y~iL~~l~~ 155 (308)
|...+.++|+.+. ..+.++. ++ .+ -+-+ |+.+|.-. +.....+..+..+|..|.+
T Consensus 22 np~~l~~le~Yv~-------qq~~~~~---YD------~~-anla---lLklYq~~-----p~~~~~~ii~~iLlk~L~~ 76 (226)
T 1rz4_A 22 NPENLATLERYVE-------TQAKENA---YD------LE-ANLA---VLKLYQFN-----PAFFQTTVTAQILLKALTN 76 (226)
T ss_dssp CGGGHHHHHHHHH-------HHHHHTC---CC------HH-HHHH---HHHHHHHS-----GGGCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHH-------HHHhccc---cc------HH-HHHH---HHHHHhcC-----CcccchhHHHHHHHHHHHc
Confidence 6788999999543 2333332 33 11 2222 33456543 3445578888888777654
Q ss_pred CCCchhhhHHHHhhhCChhhhcCHhHHHHHHHHHHHHhCCHHHHHHHHHhcccHHHHHHHhHhHHHHHHHHHHHHHhhhc
Q 021722 156 NGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCY 235 (308)
Q Consensus 156 ~~~~~~~~l~~~l~~l~~~i~~s~~v~~Al~v~~a~~~~Ny~rfFkLl~~~~~~L~~cl~~~~~~~vR~~aL~~i~~a~y 235 (308)
... .+ +...+--||+++..+|.|+..+++.+.++.++|.+||+.+.+. +- ....+..+...+|......+.+ +|
T Consensus 77 ~p~--~D-F~~~l~LIp~~~~~~~~I~~i~~L~~~L~~~~y~~fW~~l~~~-~~-l~~~i~gf~dsIR~~I~~~i~~-aY 150 (226)
T 1rz4_A 77 LPH--TD-FTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDEN-MD-LLEGITGFEDSVRKFICHVVGI-TY 150 (226)
T ss_dssp TTS--TH-HHHHHHTSCHHHHTSTTHHHHHHHHHHHHTTCHHHHHHHSCTT-CH-HHHTSTTHHHHHHHHHHHHHHH-HC
T ss_pred CCH--HH-HHHHHHhCChhhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcC-hh-HHHHHhHHHHHHHHHHHHHHHH-HH
Confidence 432 11 2222334799998999999999999999999999999976432 21 1223344777899999999998 68
Q ss_pred CCCCcCHHHHHHHhcC-CchHHHHHHHHhCCeecccCCCcccc
Q 021722 236 KLHPYPLGHLSKVLMM-EESDVELFCNAYGLQTCIDEVGNKLL 277 (308)
Q Consensus 236 k~~~ipl~~L~~~L~f-~~~e~~~f~~~~Gl~~~~d~~g~~~l 277 (308)
. .||++.++++||+ ++.++.+||+..||++ |++|.++.
T Consensus 151 ~--sI~~~~la~lLg~~s~~el~~fi~~~GW~v--d~~g~I~~ 189 (226)
T 1rz4_A 151 Q--HIDRWLLAEMLGDLSDSQLKVWMSKYGWSA--DESGQIFI 189 (226)
T ss_dssp S--EECHHHHHHHTTSCCHHHHHHHHHHHTCEE--CC--CEEC
T ss_pred h--hCCHHHHHHHHcCCCHHHHHHHHHHCCCEE--CCCccEEe
Confidence 7 6999999999974 5688999999999998 45676654
No 5
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.29 E-value=0.058 Score=51.11 Aligned_cols=150 Identities=13% Similarity=0.138 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhhcCCCC-chhhhHHHHhhhCChhhhcCHhHHHHHHHHHHHHhCCHHHHHHHHHh------cccHHHHHH
Q 021722 142 AEFRSFYVLLHLDSNGQ-PVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAA------EASYLQYCI 214 (308)
Q Consensus 142 ~Ef~~Y~iL~~l~~~~~-~~~~~l~~~l~~l~~~i~~s~~v~~Al~v~~a~~~~Ny~rfFkLl~~------~~~~L~~cl 214 (308)
..+.-|.+|..|-..+. .+...++ ...... ..+|.+.....+..|+..+++..|++.+.. .-+++..+
T Consensus 220 ~~~lkYlvL~aLl~~~r~el~~~l~---~~~~~~-~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h- 294 (394)
T 3txn_A 220 LTSLKYMLLCKIMLGQSDDVNQLVS---GKLAIT-YSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAH- 294 (394)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHH---SHHHHT-TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhc---cccccc-cCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHH-
Confidence 45667777777644332 2221111 000001 267999999999999999999999998764 23444333
Q ss_pred HhHhHHHHHHHHHHHHHhhhcCCCCcCHHHHHHHhcCCchHHHHHHHHh---CC-eecccC-CCcccc---cCCCCcccC
Q 021722 215 IEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAY---GL-QTCIDE-VGNKLL---PTKQTTFCR 286 (308)
Q Consensus 215 ~~~~~~~vR~~aL~~i~~a~yk~~~ipl~~L~~~L~f~~~e~~~f~~~~---Gl-~~~~d~-~g~~~l---~~k~~~f~~ 286 (308)
.......||.++|..+.. .|+ .|+++.+++.|+.+.++++..+... |. ...-|. +|-+.. +.+.+.|..
T Consensus 295 ~~~L~~~Ir~~~L~~i~~-pYs--rIsl~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~~r~~~y~~ 371 (394)
T 3txn_A 295 LGTLYDTMLEQNLCRIIE-PYS--RVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYER 371 (394)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCS--EEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC---------
T ss_pred HHHHHHHHHHHHHHHHhH-hhc--eeeHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCcchhhHHHH
Confidence 344566899999999987 687 6999999999999876655444322 33 322243 443332 113444665
Q ss_pred CCCCCccccchhh
Q 021722 287 PKGGLQNYSFLGF 299 (308)
Q Consensus 287 ~~~~~~~~~~~~~ 299 (308)
.-+.++.|+--..
T Consensus 372 ale~l~~ls~vVd 384 (394)
T 3txn_A 372 VLETIQSMGKVVD 384 (394)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 6666666654443
No 6
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.54 E-value=1 Score=42.33 Aligned_cols=101 Identities=16% Similarity=0.183 Sum_probs=67.0
Q ss_pred hhcCHhHHHHHHHHHHHHhCCHHHHHHHHHh---cccHHHHHHHhHhHHHHHHHHHHHHHhhhcCCCCcCHHHHHHHhcC
Q 021722 175 IIKSKEMWFARQALRYFQMGNYRRFLSTVAA---EASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMM 251 (308)
Q Consensus 175 i~~s~~v~~Al~v~~a~~~~Ny~rfFkLl~~---~~~~L~~cl~~~~~~~vR~~aL~~i~~a~yk~~~ipl~~L~~~L~f 251 (308)
+.++|....-.++..++..||+..|...+.. ..|.+.... .....++|..+|..++. +.....+|.+.+++.|+.
T Consensus 242 L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~~-~~l~~kirll~l~~l~~-~~~~~~i~f~~ia~~l~i 319 (393)
T 4b4t_O 242 IVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHE-SFLRQKICLMTLIETVF-VKNIRMLSFEDISKATHL 319 (393)
T ss_dssp SCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHHH-HHHHHHHHHHHHHHHHC-SSSCCCEEHHHHHHHHTC
T ss_pred hhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhhH-HHHHHHHHHHHHHHHhc-cCCCCcCcHHHHHHHhCc
Confidence 3456777778899999999999999885432 344444322 22356789988888764 222237999999999999
Q ss_pred CchHHHHH---HHHhCCeec-ccC-CCcccc
Q 021722 252 EESDVELF---CNAYGLQTC-IDE-VGNKLL 277 (308)
Q Consensus 252 ~~~e~~~f---~~~~Gl~~~-~d~-~g~~~l 277 (308)
+.+|++.+ +-+.|+.-. -|. +|.+.+
T Consensus 320 ~~~evE~lli~aI~~glI~GkIDQv~~~v~v 350 (393)
T 4b4t_O 320 PKDNVEHLVMRAISLGLLKGSIDQVNELVTI 350 (393)
T ss_dssp CHHHHHHHHHHHHHHSCSSSCEETTTTEECC
T ss_pred CHHHHHHHHHHHHHcCCEEEEEcCCCCEEEE
Confidence 87666555 345576432 244 444433
No 7
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.33 E-value=0.22 Score=47.31 Aligned_cols=94 Identities=14% Similarity=0.210 Sum_probs=67.2
Q ss_pred CHhHHHHHHHHHHHHhCCHHHHHHHHHh-------cccHHHHHHHhHhHHHHHHHHHHHHHhhhcCCCCcCHHHHHHHhc
Q 021722 178 SKEMWFARQALRYFQMGNYRRFLSTVAA-------EASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLM 250 (308)
Q Consensus 178 s~~v~~Al~v~~a~~~~Ny~rfFkLl~~-------~~~~L~~cl~~~~~~~vR~~aL~~i~~a~yk~~~ipl~~L~~~L~ 250 (308)
.|.++-..++..++..++|..||..+.. ..+++..+ ...+...||.+++..+.+ .|+ .|.++.+++.||
T Consensus 283 ~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h-~~~l~~~ir~~~l~q~~~-~Ys--~I~l~~mA~~l~ 358 (429)
T 4b4t_R 283 TAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRH-ADFFVREMRRKVYAQLLE-SYK--TLSLKSMASAFG 358 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTT-HHHHHHHHHHHHHHHHHH-TCS--EEEHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHH-HHHHHHHHHHHHHHHHhH-Hhc--eeeHHHHHHHhC
Confidence 3667777888999999999999985432 12344443 344577899999999998 687 699999999999
Q ss_pred CCchHH----HHHHHHhCCeecccCCCcc
Q 021722 251 MEESDV----ELFCNAYGLQTCIDEVGNK 275 (308)
Q Consensus 251 f~~~e~----~~f~~~~Gl~~~~d~~g~~ 275 (308)
.+.+++ ..+...--+...-|...++
T Consensus 359 ~s~~~~E~~L~~lI~~g~l~akID~~~gi 387 (429)
T 4b4t_R 359 VSVAFLDNDLGKFIPNKQLNCVIDRVNGI 387 (429)
T ss_dssp SCHHHHHHHHHHHHHHTSSCEEEETTTTE
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEcCCCCE
Confidence 997554 4455544555544553333
No 8
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=93.25 E-value=0.32 Score=41.55 Aligned_cols=98 Identities=16% Similarity=0.222 Sum_probs=61.8
Q ss_pred HHHHHHHhCCHHHHHHHHHhcccHHHHHHHhHhHHHHHHHHHHHHHhhhc---CCCCcCHHHHHHHhcCC------chHH
Q 021722 186 QALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCY---KLHPYPLGHLSKVLMME------ESDV 256 (308)
Q Consensus 186 ~v~~a~~~~Ny~rfFkLl~~~~~~L~~cl~~~~~~~vR~~aL~~i~~a~y---k~~~ipl~~L~~~L~f~------~~e~ 256 (308)
.+.+|+..||..+|=+.+.+....+..+=+..-+.++|..+++.+.+..+ +...||++.++.-|.++ .+|+
T Consensus 85 ~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~~~ev 164 (203)
T 3t5x_A 85 EVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDIDEV 164 (203)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCCHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCHHHH
Confidence 68899999999999998876433433332223457789988888766322 23479999999999763 3444
Q ss_pred HHH---HHHhCCe-ec-ccCCCcccccCCCCcc
Q 021722 257 ELF---CNAYGLQ-TC-IDEVGNKLLPTKQTTF 284 (308)
Q Consensus 257 ~~f---~~~~Gl~-~~-~d~~g~~~l~~k~~~f 284 (308)
+.. +-.-|.. -. +.++|-+++ .|+.+|
T Consensus 165 E~ila~lI~~G~Ikg~I~~~~~~lVl-sk~~pF 196 (203)
T 3t5x_A 165 QCILANLIYMGHVKGYISHQHQKLVV-SKQNPF 196 (203)
T ss_dssp HHHHHHHHHHTSSCEEEETTTTEEEE-CSSCSS
T ss_pred HHHHHHHHHcCceEEEEcccccEEEE-CCCCCC
Confidence 333 4455663 22 244454444 455555
No 9
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=87.19 E-value=2.1 Score=35.50 Aligned_cols=79 Identities=19% Similarity=0.198 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHhcccHHHHHHHhHhHHHHHHHHHHHHHhhhcCCCCcCHHHHHHHhcCC-chHHHHH
Q 021722 181 MWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMME-ESDVELF 259 (308)
Q Consensus 181 v~~Al~v~~a~~~~Ny~rfFkLl~~~~~~L~~cl~~~~~~~vR~~aL~~i~~a~yk~~~ipl~~L~~~L~f~-~~e~~~f 259 (308)
-....++...+..|+|..|-.. .+..|-|.. .-..+||.-+|-.++. ..+ .+|.+.+++.|+.+ ..|.+.+
T Consensus 59 ~~~~~~LL~iF~~G~~~~y~~~-~~~~p~L~~----~~~~KlrlLtL~sLa~-~~~--~lsy~~I~~~l~i~~~~evE~l 130 (169)
T 3chm_A 59 DSVYLDLLRLFAHGTWGDYKCN-ATRLPHLSP----DQILKLKQLTVLTLAE-SNK--VLPYDTLMVELDVSNVRELEDF 130 (169)
T ss_dssp THHHHHHHHHHHHCCHHHHHHH-GGGSCCCCH----HHHHHHHHHHHHHHHH-HCS--EEEHHHHHHHHTCCSHHHHHHH
T ss_pred hhHHHHHHHHHhcCCHHHHHHh-HHhCcchHH----HHHHHHHHHHHHHHHH-hCC--CcCHHHHHHHhCCCCHHHHHHH
Confidence 4567789999999999998873 445665553 3345699999998875 333 79999999999999 5666665
Q ss_pred HH----HhCCee
Q 021722 260 CN----AYGLQT 267 (308)
Q Consensus 260 ~~----~~Gl~~ 267 (308)
+- +.|+.-
T Consensus 131 vI~~ai~~gLI~ 142 (169)
T 3chm_A 131 LINECMYAGIVR 142 (169)
T ss_dssp HHHTHHHHTSEE
T ss_pred HHHHHHHhCCeE
Confidence 44 468754
No 10
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.98 E-value=19 Score=32.32 Aligned_cols=83 Identities=14% Similarity=0.185 Sum_probs=60.8
Q ss_pred cCHhHHHHHHHHHHHHhCCHHHHHHHHHhc-----ccHHHHHHHhHhHHHHHHHHHHHHHhhhcCCCCcCHHHHHHHhcC
Q 021722 177 KSKEMWFARQALRYFQMGNYRRFLSTVAAE-----ASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMM 251 (308)
Q Consensus 177 ~s~~v~~Al~v~~a~~~~Ny~rfFkLl~~~-----~~~L~~cl~~~~~~~vR~~aL~~i~~a~yk~~~ipl~~L~~~L~f 251 (308)
..+.+.....+..++..+++..|.+.+... ......-........+|..++..+.+ .|+ .++++.+++.|+.
T Consensus 292 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~-~y~--~i~l~~la~~l~~ 368 (434)
T 4b4t_Q 292 QSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIE-PFE--CVEISHISKIIGL 368 (434)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHS-SCS--CEEHHHHHHHHTC
T ss_pred cchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHH-HHH--hcCHHHHHHHhCc
Confidence 456777777888999999999998876531 12222333445567788899999987 676 6999999999999
Q ss_pred CchHHHHHHHH
Q 021722 252 EESDVELFCNA 262 (308)
Q Consensus 252 ~~~e~~~f~~~ 262 (308)
+.++++..+..
T Consensus 369 ~~~~~E~~l~~ 379 (434)
T 4b4t_Q 369 DTQQVEGKLSQ 379 (434)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 97776655543
No 11
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=83.65 E-value=5.4 Score=38.23 Aligned_cols=73 Identities=10% Similarity=0.105 Sum_probs=51.0
Q ss_pred HhHHH-HHHHHHHHHhCCHHHHHHHHHhcccHHHHH-HHhHhHHHHHHHHHHHHHhhh-------cCCCCcCHHHHHHHh
Q 021722 179 KEMWF-ARQALRYFQMGNYRRFLSTVAAEASYLQYC-IIEPYIDEVRSLALCCIHNCC-------YKLHPYPLGHLSKVL 249 (308)
Q Consensus 179 ~~v~~-Al~v~~a~~~~Ny~rfFkLl~~~~~~L~~c-l~~~~~~~vR~~aL~~i~~a~-------yk~~~ipl~~L~~~L 249 (308)
|.+.- =..+.+|+..||..+|=+.+.+....+.++ ++...+.++|..+++.+.+.. |+...||++.++.-|
T Consensus 293 ~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL 372 (455)
T 3t5v_B 293 QETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVL 372 (455)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHH
Confidence 44543 457999999999999999887643333333 325556677877766655532 444679999999999
Q ss_pred cC
Q 021722 250 MM 251 (308)
Q Consensus 250 ~f 251 (308)
.+
T Consensus 373 ~~ 374 (455)
T 3t5v_B 373 QL 374 (455)
T ss_dssp HH
T ss_pred hh
Confidence 85
No 12
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=77.42 E-value=3.5 Score=29.95 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhhcCCCCcCHHHHHHHhcCCchHHHHHHHH
Q 021722 221 EVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNA 262 (308)
Q Consensus 221 ~vR~~aL~~i~~a~yk~~~ipl~~L~~~L~f~~~e~~~f~~~ 262 (308)
++....|+.+.+ .|. .|.++.|+++|+++.++++.++..
T Consensus 15 ~v~E~nl~~is~-~Y~--~Isl~~La~ll~ls~~~vE~~ls~ 53 (84)
T 1ufm_A 15 AVIEHNLLSASK-LYN--NITFEELGALLEIPAAKAEKIASQ 53 (84)
T ss_dssp HHHHHHHHHHHH-SCS--EEEHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hcC--eeeHHHHHHHHCcCHHHHHHHHHH
Confidence 355667777877 687 699999999999997766555443
No 13
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.81 E-value=41 Score=31.62 Aligned_cols=81 Identities=19% Similarity=0.188 Sum_probs=52.6
Q ss_pred HhHHHHHHHHHHHHhCCHHHHHHHHHhcccHHH-----------HHHHhHhHHHHHHHHHHHHHhhhcCCCCcCHHHHHH
Q 021722 179 KEMWFARQALRYFQMGNYRRFLSTVAAEASYLQ-----------YCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSK 247 (308)
Q Consensus 179 ~~v~~Al~v~~a~~~~Ny~rfFkLl~~~~~~L~-----------~cl~~~~~~~vR~~aL~~i~~a~yk~~~ipl~~L~~ 247 (308)
+.+..--.+..++..++..+|-..+..-.+.+. .--....-..++...|..+.+ .|+ .|+++.|++
T Consensus 291 ~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k-~Ys--~I~l~~la~ 367 (445)
T 4b4t_P 291 KKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISE-YYS--RITLLRLNE 367 (445)
T ss_dssp HHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHH-HEE--EEEHHHHHH
T ss_pred cccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHH-Hhc--eeeHHHHHH
Confidence 445555567788888887666654432111100 111233345677888888887 687 699999999
Q ss_pred HhcCCchHHHHHHHH
Q 021722 248 VLMMEESDVELFCNA 262 (308)
Q Consensus 248 ~L~f~~~e~~~f~~~ 262 (308)
+|+++.+|++.++..
T Consensus 368 lL~l~~~evE~~ls~ 382 (445)
T 4b4t_P 368 LLDLTESQTETYISD 382 (445)
T ss_dssp HHTSCHHHHHHHHHH
T ss_pred HhCcCHHHHHHHHHH
Confidence 999998777666543
No 14
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=73.09 E-value=3.3 Score=26.51 Aligned_cols=27 Identities=7% Similarity=0.092 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCc-hHHHHHHHHhCCeec
Q 021722 242 LGHLSKVLMMEE-SDVELFCNAYGLQTC 268 (308)
Q Consensus 242 l~~L~~~L~f~~-~e~~~f~~~~Gl~~~ 268 (308)
++.+.++-|.++ ++|..+|+++||.+.
T Consensus 9 ia~F~~iTG~~d~~~A~~~Lea~nWDLe 36 (45)
T 3e21_A 9 LADFQACTGIENIDEAITLLEQNNWDLV 36 (45)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHcCCcHH
Confidence 567888999998 899999999999874
No 15
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.13 E-value=12 Score=36.42 Aligned_cols=72 Identities=18% Similarity=0.241 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHhcccHHHH----HHHhHhHHHHHHHHHHHHHhhhcCCCCcCHHHHHHHhcCCc-hHHHHH
Q 021722 185 RQALRYFQMGNYRRFLSTVAAEASYLQY----CIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEE-SDVELF 259 (308)
Q Consensus 185 l~v~~a~~~~Ny~rfFkLl~~~~~~L~~----cl~~~~~~~vR~~aL~~i~~a~yk~~~ipl~~L~~~L~f~~-~e~~~f 259 (308)
..+.+|+..||...|=..+.+......+ -++.+....+....++.+.+ +|. .||+++++..|++++ +|++..
T Consensus 346 ~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~-~Ys--rIsL~dIa~kL~L~s~eeaE~i 422 (523)
T 4b4t_S 346 YHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISL-TYK--KISLRDICLKLNLDSEQTVEYM 422 (523)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCC-CSS--EECHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHH-HHh--cccHHHHHHHhCCCCHHHHHHH
Confidence 4678899999999998877643222222 13333334455666777776 576 699999999999974 445444
No 16
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=56.07 E-value=5.8 Score=30.24 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=17.9
Q ss_pred HhcCCc-hHHHHHHHHhCCeecc
Q 021722 248 VLMMEE-SDVELFCNAYGLQTCI 269 (308)
Q Consensus 248 ~L~f~~-~e~~~f~~~~Gl~~~~ 269 (308)
.|.|++ +||+.||+.+|+...-
T Consensus 55 ~L~F~skE~AiayAek~G~~y~V 77 (106)
T 2jya_A 55 KLTFETQEQAEAYAQRKGIEYRV 77 (106)
T ss_dssp EEEESSHHHHHHHHHHHTCEEEE
T ss_pred eEecCCHHHHHHHHHHcCCEEEE
Confidence 367886 6799999999998754
No 17
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=49.85 E-value=36 Score=22.96 Aligned_cols=43 Identities=12% Similarity=-0.010 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhhcCCCCcCHHHHHHHhcCCchH---HHHHHHHhCCee
Q 021722 222 VRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESD---VELFCNAYGLQT 267 (308)
Q Consensus 222 vR~~aL~~i~~a~yk~~~ipl~~L~~~L~f~~~e---~~~f~~~~Gl~~ 267 (308)
+|.+.|..+... ..++++.+|++.|+.+... ...-++..|+..
T Consensus 11 ~~~~IL~~L~~~---~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 11 LEQKILQVLSDD---GGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp HHHHHHHHHHHH---CSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc---CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEe
Confidence 677888888642 2379999999999999643 577788889954
No 18
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=46.55 E-value=7.4 Score=29.74 Aligned_cols=22 Identities=9% Similarity=0.052 Sum_probs=18.0
Q ss_pred HhcCCc-hHHHHHHHHhCCeecc
Q 021722 248 VLMMEE-SDVELFCNAYGLQTCI 269 (308)
Q Consensus 248 ~L~f~~-~e~~~f~~~~Gl~~~~ 269 (308)
.|.|++ ++|+.||+.+|+...-
T Consensus 63 ~L~F~skE~AiayAek~G~~y~V 85 (108)
T 2lju_A 63 CLSFTTRELAIAYAVAHKIDYTV 85 (108)
T ss_dssp CEEESSHHHHHHHHHHTTCEEEE
T ss_pred eEecCCHHHHHHHHHHcCCEEEE
Confidence 367886 6799999999998754
No 19
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=44.44 E-value=53 Score=23.84 Aligned_cols=45 Identities=11% Similarity=0.225 Sum_probs=32.1
Q ss_pred hHHHHHH-HHHHHHHhhhcCCCCcCHHHHHHHhcCCchH--HHHHHHHhCCee
Q 021722 218 YIDEVRS-LALCCIHNCCYKLHPYPLGHLSKVLMMEESD--VELFCNAYGLQT 267 (308)
Q Consensus 218 ~~~~vR~-~aL~~i~~a~yk~~~ipl~~L~~~L~f~~~e--~~~f~~~~Gl~~ 267 (308)
|+..+|. .|.+.+.. . ..|+.+++..+||.+.. ...|-+.+|.+-
T Consensus 52 ~~~~~Rl~~A~~lL~~----~-~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP 99 (107)
T 2k9s_A 52 WREDQRISQAKLLLST----T-RMPIATVGRNVGFDDQLYFSRVFKKCTGASP 99 (107)
T ss_dssp HHHHHHHHHHHHHHHH----C-CCCHHHHHHHTTCCCHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHHHHc----C-CCCHHHHHHHhCCCCHHHHHHHHHHHHCcCH
Confidence 3445665 44445532 1 58999999999999854 678888889864
No 20
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=43.50 E-value=53 Score=24.08 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=32.5
Q ss_pred hHHHHHHH-HHHHHHhhhcCCCCcCHHHHHHHhcCCchH--HHHHHHHhCCeec
Q 021722 218 YIDEVRSL-ALCCIHNCCYKLHPYPLGHLSKVLMMEESD--VELFCNAYGLQTC 268 (308)
Q Consensus 218 ~~~~vR~~-aL~~i~~a~yk~~~ipl~~L~~~L~f~~~e--~~~f~~~~Gl~~~ 268 (308)
|+..+|.. |.+.+.. . ..|+.+++..+||.+.. ...|-+.+|.+-.
T Consensus 55 ~~~~~Rl~~A~~lL~~----~-~~~i~eIA~~~Gf~~~s~F~r~Fk~~~G~tP~ 103 (113)
T 3oio_A 55 YYLELRLNRARQLLQQ----T-SKSIVQIGLACGFSSGPHFSSTYRNHFNITPR 103 (113)
T ss_dssp HHHHHHHHHHHHHHHH----C-CCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHHHc----C-CCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHH
Confidence 34455664 4444432 1 58999999999999854 6888888898754
No 21
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=42.07 E-value=54 Score=23.82 Aligned_cols=44 Identities=11% Similarity=-0.027 Sum_probs=30.8
Q ss_pred HHHHHHH-HHHHHHhhhcCCCCcCHHHHHHHhcCCchH--HHHHHHHhCCee
Q 021722 219 IDEVRSL-ALCCIHNCCYKLHPYPLGHLSKVLMMEESD--VELFCNAYGLQT 267 (308)
Q Consensus 219 ~~~vR~~-aL~~i~~a~yk~~~ipl~~L~~~L~f~~~e--~~~f~~~~Gl~~ 267 (308)
+..+|.. |...+.. . ..|+.+++..+||++.. ...|=+.+|.+-
T Consensus 54 ~~~~Rl~~A~~lL~~----~-~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP 100 (108)
T 3oou_A 54 LNRYRVNYAKEELLQ----T-KDNLTIIAGKSGYTDMAYFYRQFKKHTGETP 100 (108)
T ss_dssp HHHHHHHHHHHHHHH----C-CCCHHHHHHHTTCCCHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHHHc----C-CCCHHHHHHHcCCCChHHHHHHHHHHhCcCH
Confidence 4445654 4444432 1 58999999999999754 678888889864
No 22
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=38.99 E-value=66 Score=27.55 Aligned_cols=50 Identities=16% Similarity=0.084 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhhcCCCCcCHHHHHHHhcCCchHHHHHHHHhCCeecccCCCcc
Q 021722 221 EVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNK 275 (308)
Q Consensus 221 ~vR~~aL~~i~~a~yk~~~ipl~~L~~~L~f~~~e~~~f~~~~Gl~~~~d~~g~~ 275 (308)
.++...|+.+.+ +.+++++.|++.+|.+.+++...++..+.... |++|+.
T Consensus 22 ~~~~~llr~la~----Grpv~~~~LA~~~g~~~~~v~~~L~~l~~~~~-D~~G~I 71 (220)
T 3f2g_A 22 DLLVPLLRELAK----GRPVSRTTLAGILDWPAERVAAVLEQATSTEY-DKDGNI 71 (220)
T ss_dssp HHHHHHHHHHTT----TSCBCHHHHHHHHTCCHHHHHHHHHHCTTCEE-CTTSCE
T ss_pred HHHHHHHHHHhc----CCCCCHHHHHHHhCcCHHHHHHHHHhCCcEEE-CCCCCE
Confidence 355556666653 55899999999999999999999999875543 567875
No 23
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=34.54 E-value=85 Score=23.62 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=33.2
Q ss_pred hHHHHHHH-HHHHHHhhhcCCCCcCHHHHHHHhcCCchH--HHHHHHHhCCeec
Q 021722 218 YIDEVRSL-ALCCIHNCCYKLHPYPLGHLSKVLMMEESD--VELFCNAYGLQTC 268 (308)
Q Consensus 218 ~~~~vR~~-aL~~i~~a~yk~~~ipl~~L~~~L~f~~~e--~~~f~~~~Gl~~~ 268 (308)
|+..+|.. |...+..+ ..|+.+++..+||.+.. ...|-+.+|.+-.
T Consensus 59 ~l~~~Rl~~A~~lL~~~-----~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~ 107 (129)
T 1bl0_A 59 YIRSRKMTEIAQKLKES-----NEPILYLAERYGFESQQTLTRTFKNYFDVPPH 107 (129)
T ss_dssp HHHHHHHHHHHHHHHHC-----CCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHHHcC-----CCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHH
Confidence 45556663 44555331 48999999999999854 6788889999764
No 24
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=32.09 E-value=31 Score=20.54 Aligned_cols=25 Identities=8% Similarity=0.040 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCchHHHHHHHHhCCee
Q 021722 242 LGHLSKVLMMEESDVELFCNAYGLQT 267 (308)
Q Consensus 242 l~~L~~~L~f~~~e~~~f~~~~Gl~~ 267 (308)
++.|.++ ||+.++++..+...|..+
T Consensus 8 i~~L~~m-Gf~~~~a~~AL~~~~~n~ 32 (40)
T 1z96_A 8 IAQLVSM-GFDPLEAAQALDAANGDL 32 (40)
T ss_dssp HHHHHHT-TCCHHHHHHHHHHTTTCH
T ss_pred HHHHHHc-CCCHHHHHHHHHHcCCCH
Confidence 5667776 998888888888887654
No 25
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=31.80 E-value=37 Score=20.96 Aligned_cols=26 Identities=8% Similarity=-0.009 Sum_probs=23.7
Q ss_pred cCHHHHHHHhcCCchHHHHHHHHhCC
Q 021722 240 YPLGHLSKVLMMEESDVELFCNAYGL 265 (308)
Q Consensus 240 ipl~~L~~~L~f~~~e~~~f~~~~Gl 265 (308)
+.+..+++.|+.+..+..++++..|+
T Consensus 3 ~rv~~lAkel~~~~k~l~~~l~~~g~ 28 (49)
T 1nd9_A 3 VTIKTLAAERQTSVERLVQQFADAGI 28 (49)
T ss_dssp ECTTHHHHHHSSSHHHHHHHHHHHTS
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHcCC
Confidence 55778999999999999999999999
No 26
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=30.58 E-value=1.4e+02 Score=21.31 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=31.8
Q ss_pred hHHHHHHH-HHHHHHhhhcCCCCcCHHHHHHHhcCCchH--HHHHHHHhCCee
Q 021722 218 YIDEVRSL-ALCCIHNCCYKLHPYPLGHLSKVLMMEESD--VELFCNAYGLQT 267 (308)
Q Consensus 218 ~~~~vR~~-aL~~i~~a~yk~~~ipl~~L~~~L~f~~~e--~~~f~~~~Gl~~ 267 (308)
|+..+|.. |.+.+..+ ...+|+.+++..+||.+.. ...|=+.+|.+-
T Consensus 50 ~~~~~Rl~~A~~lL~~~---~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP 99 (108)
T 3mn2_A 50 FAKRVRLQHAHNLLSDG---ATPTTVTAAALSCGFSNLGHFARDYRDMFGEKP 99 (108)
T ss_dssp HHHHHHHHHHHHHHHSS---SSCCCHHHHHHHTTCCCHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHHHHcC---CCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCh
Confidence 34445653 44454331 1138999999999999854 678888889865
No 27
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=28.04 E-value=1.4e+02 Score=21.94 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=32.1
Q ss_pred hHHHHHHH-HHHHHHhhhcCCCCcCHHHHHHHhcCCchH--HHHHHHHhCCeec
Q 021722 218 YIDEVRSL-ALCCIHNCCYKLHPYPLGHLSKVLMMEESD--VELFCNAYGLQTC 268 (308)
Q Consensus 218 ~~~~vR~~-aL~~i~~a~yk~~~ipl~~L~~~L~f~~~e--~~~f~~~~Gl~~~ 268 (308)
|+..+|.. |...+.. ...|+.+++..+||.+.. ...|=+.+|++-.
T Consensus 54 ~~~~~Rl~~A~~lL~~-----~~~si~eIA~~~Gf~~~s~F~r~Fk~~~G~tP~ 102 (120)
T 3mkl_A 54 LLTECRMQRALQLIVI-----HGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPT 102 (120)
T ss_dssp HHHHHHHHHHHHHHTS-----TTCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHHHc-----CCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHH
Confidence 44556664 3444421 258999999999999854 6788888898764
No 28
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=26.49 E-value=1.5e+02 Score=21.05 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=30.9
Q ss_pred hHHHHHHH-HHHHHHhhhcCCCCcCHHHHHHHhcCCchH--HHHHHHHhCCee
Q 021722 218 YIDEVRSL-ALCCIHNCCYKLHPYPLGHLSKVLMMEESD--VELFCNAYGLQT 267 (308)
Q Consensus 218 ~~~~vR~~-aL~~i~~a~yk~~~ipl~~L~~~L~f~~~e--~~~f~~~~Gl~~ 267 (308)
|+..+|.. |...+.. + ..|+.+++..+||.+.. ...|=+.+|.+-
T Consensus 51 ~~~~~Rl~~A~~lL~~----~-~~si~~iA~~~Gf~~~s~F~r~Fk~~~G~tP 98 (103)
T 3lsg_A 51 YLLQKRMEKAKLLLLT----T-ELKNYEIAEQVGFEDVNYFITKFKKYYQITP 98 (103)
T ss_dssp HHHHHHHHHHHHHHHH----C-CCCHHHHHHHTTCSCHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHHHHC----C-CCCHHHHHHHhCCCCHHHHHHHHHHHHCcCH
Confidence 34445664 4444432 1 58999999999999754 577878888864
No 29
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=26.14 E-value=59 Score=19.93 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCchHHHHHHHHhCCeec
Q 021722 242 LGHLSKVLMMEESDVELFCNAYGLQTC 268 (308)
Q Consensus 242 l~~L~~~L~f~~~e~~~f~~~~Gl~~~ 268 (308)
+..+..+-|.++..|..+|+.+||.+.
T Consensus 9 i~~F~~iTg~~~~~A~~~L~~~~wdle 35 (46)
T 1v92_A 9 LREFVAVTGAEEDRARFFLESAGWDLQ 35 (46)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHTTSCSH
T ss_pred HHHHHHHhCcCHHHHHHHHHHcCCCHH
Confidence 556677777777789999999999874
No 30
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=24.82 E-value=74 Score=19.48 Aligned_cols=28 Identities=7% Similarity=0.121 Sum_probs=20.4
Q ss_pred hhhhhhhhhhhhhhhhcCCc-hhHHHHHH
Q 021722 58 VFDRTRSVRQDLIMQNIVND-KAINMFEK 85 (308)
Q Consensus 58 i~DRlRaIRQDl~vQ~i~~~-~~v~vlE~ 85 (308)
+.|+.++|+|-+-+-.-.++ ++++.||.
T Consensus 6 ~~d~I~aiEQqiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 6 SAANKDAIRKQMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 56888899888777666554 57777775
No 31
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=24.21 E-value=1.7e+02 Score=19.84 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhhcCCCCcCHHHHHHHhcCCch---HHHHHHHHhCCee
Q 021722 223 RSLALCCIHNCCYKLHPYPLGHLSKVLMMEES---DVELFCNAYGLQT 267 (308)
Q Consensus 223 R~~aL~~i~~a~yk~~~ipl~~L~~~L~f~~~---e~~~f~~~~Gl~~ 267 (308)
|...|..+.. ..++++.+|++.++++.. ....-++..|+..
T Consensus 2 r~~Il~~L~~----~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~ 45 (81)
T 2htj_A 2 KNEILEFLNR----HNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQ 45 (81)
T ss_dssp HHHHHHHHHH----SCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHH----cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 5566666653 236999999999999964 4677788899976
No 32
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=22.49 E-value=2e+02 Score=21.35 Aligned_cols=43 Identities=14% Similarity=0.085 Sum_probs=30.5
Q ss_pred HHHHHHhhhcCCCCcCHHHHHHHhcCCc---hHHHHHHHHhCCeecc
Q 021722 226 ALCCIHNCCYKLHPYPLGHLSKVLMMEE---SDVELFCNAYGLQTCI 269 (308)
Q Consensus 226 aL~~i~~a~yk~~~ipl~~L~~~L~f~~---~e~~~f~~~~Gl~~~~ 269 (308)
+|..+.. .+...++++..|++.++.+. .....-++..|+....
T Consensus 14 iL~~la~-~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 14 IMIELAK-KHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp HHHHHHH-TTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHh-CCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEec
Confidence 3444443 23235799999999999996 4578889999996543
No 33
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=22.26 E-value=1.7e+02 Score=20.73 Aligned_cols=42 Identities=19% Similarity=0.326 Sum_probs=26.7
Q ss_pred HHHHHHHhhhcCCCCcCHHHHHHHhcCCchHHHHHHH-HhCCee
Q 021722 225 LALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCN-AYGLQT 267 (308)
Q Consensus 225 ~aL~~i~~a~yk~~~ipl~~L~~~L~f~~~e~~~f~~-~~Gl~~ 267 (308)
++...|.. .+...+++++++++.+|++.......++ ..|.++
T Consensus 6 ~i~~~i~~-~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~g~s~ 48 (103)
T 3lsg_A 6 LIQNIIEE-SYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFGIPF 48 (103)
T ss_dssp HHHHHHHH-HTTCTTCCHHHHHHHTTCCHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHH-HccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH
Confidence 34445544 4543379999999999998766544333 337665
No 34
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=21.72 E-value=1.5e+02 Score=21.23 Aligned_cols=43 Identities=9% Similarity=0.153 Sum_probs=27.6
Q ss_pred HHHHHHHhhhcCCCCcCHHHHHHHhcCCchHHHHHH-HHhCCeec
Q 021722 225 LALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFC-NAYGLQTC 268 (308)
Q Consensus 225 ~aL~~i~~a~yk~~~ipl~~L~~~L~f~~~e~~~f~-~~~Gl~~~ 268 (308)
+++..|.. .+...+++++++++.+|++.......+ +..|.++.
T Consensus 7 ~~~~~i~~-~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~ 50 (107)
T 2k9s_A 7 EACQYISD-HLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVL 50 (107)
T ss_dssp HHHHHHHH-TSSCSSCCHHHHHHHTTSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHH-HhccCCCCHHHHHHHHCCCHHHHHHHHHHHHCcCHH
Confidence 45555654 454247999999999999876543333 34476653
No 35
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=21.07 E-value=20 Score=24.35 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=21.4
Q ss_pred CHHHHHHHhcCCc-hHHHHHHHHhCCee
Q 021722 241 PLGHLSKVLMMEE-SDVELFCNAYGLQT 267 (308)
Q Consensus 241 pl~~L~~~L~f~~-~e~~~f~~~~Gl~~ 267 (308)
|-..++++|.-.+ +|.+++|+..||.+
T Consensus 18 pP~aI~DLLksvds~eV~~YC~~kGwIi 45 (60)
T 1ng7_A 18 PPECINDLLQAVDSQEVRDYCEKKGWIV 45 (60)
T ss_dssp SSTTTHHHHHHHCCHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHCCcee
Confidence 4455778877554 78899999999997
No 36
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=20.89 E-value=1.7e+02 Score=24.84 Aligned_cols=46 Identities=11% Similarity=0.199 Sum_probs=32.2
Q ss_pred hHHHHHHH-HHHHHHhhhcCCCCcCHHHHHHHhcCCchH--HHHHHHHhCCeec
Q 021722 218 YIDEVRSL-ALCCIHNCCYKLHPYPLGHLSKVLMMEESD--VELFCNAYGLQTC 268 (308)
Q Consensus 218 ~~~~vR~~-aL~~i~~a~yk~~~ipl~~L~~~L~f~~~e--~~~f~~~~Gl~~~ 268 (308)
|+...|.. |.+.+.. . ..|+.+++..+||++.. ...|-+.+|.+-.
T Consensus 51 ~~~~~Rl~~a~~~L~~----~-~~~i~~ia~~~Gf~~~~~f~r~fk~~~g~~P~ 99 (292)
T 1d5y_A 51 YIRARRLSKSAVALRL----T-ARPILDIALQYRFDSQQTFTRAFKKQFAQTPA 99 (292)
T ss_dssp HHHHHHHHHHHHHHHH----C-CCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHHhc----C-CCCHHHHHHHcCCCCHHHHHHHHHHHHCcChH
Confidence 34445653 3444432 1 48999999999999865 5788888898754
Done!