BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021726
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 130/282 (46%), Gaps = 17/282 (6%)
Query: 25 KTIKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAK 84
KT LPPGP LP +GNL Q D F RL ++YG + ++ LGS P++V+
Sbjct: 4 KTSSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTD 63
Query: 85 MAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIRKICVVHL--FNSNRV 142
E L F R + + + G V FA WR +R+ + + F +
Sbjct: 64 AIREALVDQAEAFSGRGKIAVVDPI-FQGYGVIFA-NGERWRALRRFSLATMRDFGMGKR 121
Query: 143 QSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFGKSYEVEDQGISE 202
I+E E L+E++ +S A ++ + L S+TS+I C I FGK ++ +D
Sbjct: 122 SVEERIQE-EARCLVEELRKSKGAL--LDNTLLFHSITSNIICSIVFGKRFDYKDPVF-- 176
Query: 203 RSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEH-- 260
R L ++ +L+ F + G++ + G R++ RN +E + F + +E+H
Sbjct: 177 -LRLLDLFFQSFSLISSFSSQVFELFSGFLKHFPGTHRQIYRNLQEINTFIGQSVEKHRA 235
Query: 261 -LDPARIKTDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMV 301
LDP ++ D +DV L ++ S + H +L V
Sbjct: 236 TLDP----SNPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTV 273
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 127/290 (43%), Gaps = 33/290 (11%)
Query: 25 KTIKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAK 84
KT LPPGP LP +GNL Q D F RL ++YG + ++ LGS P++V+
Sbjct: 4 KTSSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTD 63
Query: 85 MAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIRKICVVHL--FNSNRV 142
E L F R + + + G V FA WR +R+ + + F +
Sbjct: 64 AIREALVDQAEAFSGRGKIAVVDPI-FQGYGVIFA-NGERWRALRRFSLATMRDFGMGKR 121
Query: 143 QSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFGKSYEVEDQ---- 198
I+E E L+E++ +S A ++ + L S+TS+I C I FGK ++ +D
Sbjct: 122 SVEERIQE-EARCLVEELRKSKGAL--LDNTLLFHSITSNIICSIVFGKRFDYKDPVFLR 178
Query: 199 ----GISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQ 254
S + ++ L GF YFP G R++ RN +E + F
Sbjct: 179 LLDLFFQSFSLISSFSSQVFELFSGFL--KYFP---------GTHRQIYRNLQEINTFIG 227
Query: 255 ELIEEH---LDPARIKTDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMV 301
+ +E+H LDP ++ D +DV L ++ S + H +L V
Sbjct: 228 QSVEKHRATLDP----SNPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTV 273
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 127/290 (43%), Gaps = 33/290 (11%)
Query: 25 KTIKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAK 84
KT LPPGP LP +GNL Q D F RL ++YG + ++ LGS P++V+
Sbjct: 4 KTSSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTD 63
Query: 85 MAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIRKICVVHL--FNSNRV 142
E L F R + + + G V FA WR +R+ + + F +
Sbjct: 64 AIREALVDQAEAFSGRGKIAVVDPI-FQGYGVIFA-NGERWRALRRFSLATMRDFGMGKR 121
Query: 143 QSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFGKSYEVEDQ---- 198
I+E E L+E++ +S A ++ + L S+TS+I C I FGK ++ +D
Sbjct: 122 SVEERIQE-EARCLVEELRKSKGAL--LDNTLLFHSITSNIICSIVFGKRFDYKDPVFLR 178
Query: 199 ----GISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQ 254
S + ++ L GF YFP G R++ RN +E + F
Sbjct: 179 LLDLFFQSFSLISSFSSQVFELFSGFL--KYFP---------GTHRQIYRNLQEINTFIG 227
Query: 255 ELIEEH---LDPARIKTDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMV 301
+ +E+H LDP ++ D +DV L ++ S + H +L V
Sbjct: 228 QSVEKHRATLDP----SNPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTV 273
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 127/290 (43%), Gaps = 33/290 (11%)
Query: 25 KTIKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAK 84
KT LPPGP LP +GNL Q D F RL ++YG + ++ LGS P++V+
Sbjct: 4 KTSSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTD 63
Query: 85 MAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIRKICVVHL--FNSNRV 142
E L F R + + + G V FA WR +R+ + + F +
Sbjct: 64 AIREALVDQAEAFSGRGKIAVVDPI-FQGYGVIFA-NGERWRALRRFSLATMRDFGMGKR 121
Query: 143 QSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFGKSYEVEDQ---- 198
I+E E L+E++ +S A ++ + L S+TS+I C I FGK ++ +D
Sbjct: 122 SVEERIQE-EARCLVEELRKSKGAL--LDNTLLFHSITSNIICSIVFGKRFDYKDPVFLR 178
Query: 199 ----GISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQ 254
S + ++ L GF YFP G R++ RN +E + F
Sbjct: 179 LLDLFFQSFSLISSFSSQVFELFSGFL--KYFP---------GTHRQIYRNLQEINTFIG 227
Query: 255 ELIEEH---LDPARIKTDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMV 301
+ +E+H LDP+ + D +DV L ++ S + H +L V
Sbjct: 228 QSVEKHRATLDPS----NPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTV 273
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 127/290 (43%), Gaps = 33/290 (11%)
Query: 25 KTIKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAK 84
KT LPPGP LP +GNL Q D F RL ++YG + ++ LGS P++V+
Sbjct: 4 KTSSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTD 63
Query: 85 MAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIRKICVVHL--FNSNRV 142
E L F R + + + G V FA WR +R+ + + F +
Sbjct: 64 AIREALVDQAEAFSGRGKIAVVDPI-FQGYGVIFA-NGERWRALRRFSLATMRDFGMGKR 121
Query: 143 QSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFGKSYEVEDQ---- 198
I+E E L+E++ +S A ++ + L S+TS+I C I FGK ++ +D
Sbjct: 122 SVEERIQE-EARCLVEELRKSKGAL--LDNTLLFHSITSNIICSIVFGKRFDYKDPVFLR 178
Query: 199 ----GISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQ 254
S + ++ L GF YFP G R++ RN +E + F
Sbjct: 179 LLDLFFQSFSLISSFSSQVFELFSGFL--KYFP---------GTHRQIYRNLQEINTFIG 227
Query: 255 ELIEEH---LDPARIKTDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMV 301
+ +E+H LDP ++ D +DV L ++ S + H +L V
Sbjct: 228 QSVEKHRATLDP----SNPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTV 273
>pdb|3E4E|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E4E|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E6I|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3E6I|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3GPH|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3GPH|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3KOH|A Chain A, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3KOH|B Chain B, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3LC4|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3LC4|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3T3Z|A Chain A, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|B Chain B, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|C Chain C, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|D Chain D, Human Cytochrome P450 2e1 In Complex With Pilocarpine
Length = 476
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 123/269 (45%), Gaps = 21/269 (7%)
Query: 25 KTIKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAK 84
KT LPPGP LP IGNL Q + N F RL++++GP+ +L +GS ++V+ K
Sbjct: 4 KTSSKGKLPPGPFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYK 63
Query: 85 MAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQS 144
+E L + +F R L + G+ P W++IR+ + L N +
Sbjct: 64 AVKEALLDYKDEFSGRGDLPAFHAHRDRGIIFNNGP---TWKDIRRFSLTTLRNYGMGKQ 120
Query: 145 FRPIR-EGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFGKSYEVEDQGISER 203
R + E L+E + ++ +P + + L+ ++ I F K ++ D+
Sbjct: 121 GNESRIQREAHFLLEALRKT--QGQPFDPTFLIGCAPCNVIADILFRKHFDYNDEKF--- 175
Query: 204 SRFGALLTETQALVVGFFVTDY--FPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEH- 260
R L E L+ ++ Y FPS ++ + G R++ +N E + E ++EH
Sbjct: 176 LRLMYLFNENFHLLSTPWLQLYNNFPS--FLHYLPGSHRKVIKNVAEVKEYVSERVKEHH 233
Query: 261 --LDPARIKTDQEDIVDVLL-QIWKQRGS 286
LDP D+ D LL ++ K++ S
Sbjct: 234 QSLDP----NCPRDLTDCLLVEMEKEKHS 258
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 128/278 (46%), Gaps = 40/278 (14%)
Query: 25 KTIKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAK 84
KT LPPGP P IGN+ Q D + + S+ YGP+ ++ LG P +V+ +
Sbjct: 4 KTSSKGKLPPGPTPFPIIGNILQIDAKDISKSLTKFSECYGPVFTVYLGMKPTVVLHGYE 63
Query: 85 MAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNA-YWREIRKICVVHLFN----- 138
+E L +F R ++ +KVS GL +AF+ NA W+E+R+ ++ L N
Sbjct: 64 AVKEALVDLGEEFAGRGSVPILEKVS-KGLGIAFS--NAKTWKEMRRFSLMTLRNFGMGK 120
Query: 139 ---SNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFGKSYEV 195
+R+Q E L+E++ ++ + P + + ++ ++ C + F ++
Sbjct: 121 RSIEDRIQE-------EARCLVEELRKTNAS--PCDPTFILGCAPCNVICSVIFHNRFDY 171
Query: 196 EDQGISERSRFGALLTETQALVVGFFVTDY--FPSIGWVDNITGMIRRLERNFKEFDAFH 253
+D+ E + L E L+ ++ Y FP++ +D G+ + L +N F
Sbjct: 172 KDE---EFLKLMESLHENVELLGTPWLQVYNNFPAL--LDYFPGIHKTLLKNADYIKNFI 226
Query: 254 QELIEEH------------LDPARIKTDQEDIVDVLLQ 279
E ++EH +D IK +QE+ ++ L+
Sbjct: 227 MEKVKEHQKLLDVNNPRDFIDCFLIKMEQENNLEFTLE 264
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 122/273 (44%), Gaps = 32/273 (11%)
Query: 25 KTIKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAK 84
K S PPGP LP IGN+ Q + LSK YGP+ +L G PI+V+ +
Sbjct: 3 KKTSSKGRPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYE 62
Query: 85 MAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIRKICVVHLFN------ 138
+E L +F R + + + G + F+ W+EIR+ ++ L N
Sbjct: 63 AVKEALIDLGEEFSGR-GIFPLAERANRGFGIVFS-NGKKWKEIRRFSLMTLRNFGMGKR 120
Query: 139 --SNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFGKSYEVE 196
+RVQ E L+E++ ++ + P + + ++ ++ C I F K ++ +
Sbjct: 121 SIEDRVQE-------EARCLVEELRKTKAS--PCDPTFILGCAPCNVICSIIFHKRFDYK 171
Query: 197 DQ---GISERSRFGALLTETQALVVGFFVTDY--FPSIGWVDNITGMIRRLERNFKEFDA 251
DQ + E+ L E ++ ++ Y FP++ +D G +L +N +
Sbjct: 172 DQQFLNLMEK------LNENIEILSSPWIQVYNNFPAL--LDYFPGTHNKLLKNVAFMKS 223
Query: 252 FHQELIEEHLDPARIKTDQEDIVDVLLQIWKQR 284
+ E ++EH + + Q+ I L+++ K++
Sbjct: 224 YILEKVKEHQESMDMNNPQDFIDCFLMKMEKEK 256
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 118/267 (44%), Gaps = 34/267 (12%)
Query: 32 LPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLK 91
LPPGP LP IGN+ Q + LSK YGP+ +L G PI+V+ + +E L
Sbjct: 12 LPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALI 71
Query: 92 THDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIRKICVVHLFN--------SNRVQ 143
+F R + + + G + F+ W+EIR+ ++ L N +RVQ
Sbjct: 72 DLGEEFSGR-GIFPLAERANRGFGIVFS-NGKKWKEIRRFSLMTLRNFGMGKRSIEDRVQ 129
Query: 144 SFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFGKSYEVEDQG---- 199
E L+E++ ++ + P + + ++ ++ C I F K ++ +DQ
Sbjct: 130 E-------EARCLVEELRKTKAS--PCDPTFILGCAPCNVICSIIFHKRFDYKDQQFLNL 180
Query: 200 ISERSRFGALLTETQALVVGFF--VTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELI 257
+ + + +L+ + F + DYFP G +L +N ++ E +
Sbjct: 181 MEKLNENIKILSSPWIQICNNFSPIIDYFP---------GTHNKLLKNVAFMKSYILEKV 231
Query: 258 EEHLDPARIKTDQEDIVDVLLQIWKQR 284
+EH + + Q+ I L+++ K++
Sbjct: 232 KEHQESMDMNNPQDFIDCFLMKMEKEK 258
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 118/268 (44%), Gaps = 25/268 (9%)
Query: 25 KTIKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAK 84
KT LPPGP LP IGN+ Q D + F SK YGP+ ++ G PI+V +
Sbjct: 4 KTSSKGKLPPGPTPLPIIGNMLQIDVKDICKSFTNFSKVYGPVFTVYFGMNPIVVFHGYE 63
Query: 85 MAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIRKICVVHLFN------ 138
+E L + +F R Q+++ GL + + W+EIR+ + L N
Sbjct: 64 AVKEALIDNGEEFSGRGNSPISQRIT-KGLGI-ISSNGKRWKEIRRFSLTTLRNFGMGKR 121
Query: 139 --SNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFGKSYEVE 196
+RVQ E L+E++ ++ + P + + ++ ++ C + F K ++ +
Sbjct: 122 SIEDRVQE-------EAHCLVEELRKTKAS--PCDPTFILGCAPCNVICSVVFQKRFDYK 172
Query: 197 DQG-ISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQE 255
DQ ++ RF + + V + FP + +D G ++ +N ++ +E
Sbjct: 173 DQNFLTLMKRFNENFRILNSPWIQ--VCNNFPLL--IDCFPGTHNKVLKNVALTRSYIRE 228
Query: 256 LIEEHLDPARIKTDQEDIVDVLLQIWKQ 283
++EH + + D +D L +Q
Sbjct: 229 KVKEHQASLDV-NNPRDFIDCFLIKMEQ 255
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 120/264 (45%), Gaps = 28/264 (10%)
Query: 32 LPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLK 91
LPPGP LP IGN+ Q D + LSK YGP+ +L G ++V+ ++ +E L
Sbjct: 12 LPPGPTPLPVIGNILQIDIKDVSKSLTNLSKIYGPVFTLYFGLERMVVLHGYEVVKEALI 71
Query: 92 THDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIRKICVVHLFN--------SNRVQ 143
+F R ++ + G + F+ W+EIR+ ++ L N +RVQ
Sbjct: 72 DLGEEFSGRGHFPLAERAN-RGFGIVFS-NGKRWKEIRRFSLMTLRNFGMGKRSIEDRVQ 129
Query: 144 SFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFGKSYEVEDQ---GI 200
E L+E++ ++ + P + + ++ ++ C I F K ++ +DQ +
Sbjct: 130 E-------EARCLVEELRKTKAS--PCDPTFILGCAPCNVICSIIFQKRFDYKDQQFLNL 180
Query: 201 SERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEH 260
E+ + T + + + FP+I +D G +L +N ++ E ++EH
Sbjct: 181 MEKLNENIRIVSTPWIQ----ICNNFPTI--IDYFPGTHNKLLKNLAFMESDILEKVKEH 234
Query: 261 LDPARIKTDQEDIVDVLLQIWKQR 284
+ I ++ I L+++ K++
Sbjct: 235 QESMDINNPRDFIDCFLIKMEKEK 258
>pdb|3IBD|A Chain A, Crystal Structure Of A Cytochrome P450 2b6 Genetic Variant
In Complex With The Inhibitor
4-(4-Chlorophenyl)imidazole
pdb|3QOA|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-Benzylpyridine.
pdb|3QU8|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|B Chain B, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|C Chain C, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|D Chain D, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|E Chain E, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|F Chain F, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3UA5|A Chain A, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
pdb|3UA5|B Chain B, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
Length = 476
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 118/256 (46%), Gaps = 17/256 (6%)
Query: 44 NLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPAL 103
NL Q D F R ++YG + ++ LG P++++ + E L F R
Sbjct: 23 NLLQMDRRGLLKSFLRFREKYGDVFTVHLGPRPVVMLCGVEAIREALVDKAEAFSGR-GK 81
Query: 104 LSQQKVSYNGLDVAFAPYNAYWREIRKICVVHL--FNSNRVQSFRPIREGEVSILIEKVS 161
++ + G V FA N W+ +R+ V + F + I+E E LIE++
Sbjct: 82 IAMVDPFFRGYGVIFANGNR-WKVLRRFSVTTMRDFGMGKRSVEERIQE-EAQCLIEELR 139
Query: 162 RSAVASKPVNLSELMKSLTSSITCRIGFGKSYEVEDQGISERSRFGALLTETQALVVGFF 221
+S A ++ + L +S+T++I C I FGK + +DQ E + L +T +L+ F
Sbjct: 140 KSKGAL--MDPTFLFQSITANIICSIVFGKRFHYQDQ---EFLKMLNLFYQTFSLISSVF 194
Query: 222 VTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEH---LDPARIKTDQEDIVDVLL 278
+ G++ + G R++ +N +E +A+ +E+H LDP+ + D++D L
Sbjct: 195 GQLFELFSGFLKHFPGAHRQVYKNLQEINAYIGHSVEKHRETLDPSAPR----DLIDTYL 250
Query: 279 QIWKQRGSKVDITWDH 294
++ S + H
Sbjct: 251 LHMEKEKSNAHSEFSH 266
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 116/267 (43%), Gaps = 19/267 (7%)
Query: 28 KSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAE 87
K + PPGP G P IG++ NP R+S+QYG ++ +R+GS P++V+S
Sbjct: 8 KGLKNPPGPWGWPLIGHMLTLG-KNPHLALSRMSQQYGDVLQIRIGSTPVVVLSGLDTIR 66
Query: 88 EVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNA-YWREIRKICVVHL----FNSNRV 142
+ L F RP L + +S NG ++F+P + W R++ L S+
Sbjct: 67 QALVRQGDDFKGRPDLYTFTLIS-NGQSMSFSPDSGPVWAARRRLAQNGLKSFSIASDPA 125
Query: 143 QSFRPIREGEVS----ILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFGKSYEVEDQ 198
S E VS +LI + N + +++ C I FG+ Y+ Q
Sbjct: 126 SSTSCYLEEHVSKEAEVLISTLQELMAGPGHFNPYRYVVVSVTNVICAICFGRRYDHNHQ 185
Query: 199 GISERSRFGALLTETQALVVGFF-VTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELI 257
+ E VVG D+ P + ++ N + + + ++F +F Q+++
Sbjct: 186 ELLSLVNLNNNFGE----VVGSGNPADFIPILRYLPNPS--LNAFKDLNEKFYSFMQKMV 239
Query: 258 EEHLDPARIKTDQEDIVDVLLQIWKQR 284
+EH K DI D L++ +++
Sbjct: 240 KEHYKTFE-KGHIRDITDSLIEHCQEK 265
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 107/259 (41%), Gaps = 18/259 (6%)
Query: 25 KTIKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAK 84
K S PPGP P IGN + F RL+++YG + +RLGS PI+V++ +
Sbjct: 3 KKTSSKGKPPGPFAWPLIGNAAAVGQA-AHLSFARLARRYGDVFQIRLGSCPIVVLNGER 61
Query: 85 MAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIRKICVVHLFN-SNRVQ 143
+ L F RP+ S + VS G +AF Y+ +W+ R+ + N R
Sbjct: 62 AIHQALVQQGSAFADRPSFASFRVVS-GGRSMAFGHYSEHWKVQRRAAHSMMRNFFTRQP 120
Query: 144 SFRPIREG----EVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFGKSYEVED-- 197
R + EG E L+ + R + ++ L +++ + FG Y +D
Sbjct: 121 RSRQVLEGHVLSEARELVALLVRGSADGAFLDPRPLTVVAVANVMSAVCFGCRYSHDDPE 180
Query: 198 --QGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEF--DAFH 253
+ +S FG + +LV YFP+ V + +L RNF F D F
Sbjct: 181 FRELLSHNEEFGRTVG-AGSLVDVMPWLQYFPNP--VRTVFREFEQLNRNFSNFILDKFL 237
Query: 254 QELIEEHLDPARIKTDQED 272
+ E L P D D
Sbjct: 238 RHC--ESLRPGAAPRDMMD 254
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 6/162 (3%)
Query: 39 LPFIGNLHQFD-YSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQF 97
LP +G+L + + N F++L K+YGP+ S+R+G+ ++V ++A+EVL F
Sbjct: 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDF 75
Query: 98 CSRPALLSQQKVSYNGLDVAFAPYNAYWREIRKICVV--HLFNSNRVQSFRPIREGEVSI 155
RP + + S N +AFA A+W+ R++ + LF Q I E+S
Sbjct: 76 SGRPQMATLDIASNNRKGIAFADSGAHWQLHRRLAMATFALFKDGD-QKLEKIICQEIST 134
Query: 156 LIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFGKSYEVED 197
L + ++ S +++S + +++ I F SY+ D
Sbjct: 135 LCDMLATHNGQS--IDISFPVFVAVTNVISLICFNTSYKNGD 174
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 7/176 (3%)
Query: 25 KTIKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAK 84
KT LPPGP LPFIGN Q + N ++S++YGP+ ++ LG ++V+
Sbjct: 4 KTSSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHD 63
Query: 85 MAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIRKICVVHL--FNSNRV 142
+E L +F R + + + G VAF+ +++R+ + L F +
Sbjct: 64 AVKEALVDQAEEFSGRGEQATFDWL-FKGYGVAFS-NGERAKQLRRFSIATLRGFGVGKR 121
Query: 143 QSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFGKSYEVEDQ 198
I+E E LI+ + + A+ ++ + + S++ I FG ++ ED+
Sbjct: 122 GIEERIQE-EAGFLIDALRGTHGAN--IDPTFFLSRTVSNVISSIVFGDRFDYEDK 174
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 7/176 (3%)
Query: 25 KTIKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAK 84
KT LPPGP LPFIGN Q + N ++S++YGP+ ++ LG ++V+
Sbjct: 4 KTSSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHD 63
Query: 85 MAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIRKICVVHL--FNSNRV 142
E L +F R + V + G V F+ +++R+ + L F +
Sbjct: 64 AVREALVDQAEEFSGRGEQATFDWV-FKGYGVVFS-NGERAKQLRRFSIATLRDFGVGKR 121
Query: 143 QSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFGKSYEVEDQ 198
I+E E LI+ + + A+ ++ + + S++ I FG ++ +D+
Sbjct: 122 GIEERIQE-EAGFLIDALRGTGGAN--IDPTFFLSRTVSNVISSIVFGDRFDYKDK 174
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 7/176 (3%)
Query: 25 KTIKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAK 84
KT LPPGP LPFIGN Q + N ++S++YGP+ ++ LG ++V+
Sbjct: 4 KTSSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHD 63
Query: 85 MAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIRKICVVHL--FNSNRV 142
E L +F R + V + G V F+ +++R+ + L F +
Sbjct: 64 AVREALVDQAEEFSGRGEQATFDWV-FKGYGVVFS-NGERAKQLRRFSIATLRDFGVGKR 121
Query: 143 QSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFGKSYEVEDQ 198
I+E E LI+ + + A+ ++ + + S++ I FG ++ +D+
Sbjct: 122 GIEERIQE-EAGFLIDALRGTGGAN--IDPTFFLSRTVSNVISSIVFGDRFDYKDK 174
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 7/176 (3%)
Query: 25 KTIKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAK 84
KT LPPGP LPFIGN Q + N ++S++YGP+ ++ LG ++V+
Sbjct: 4 KTSSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHD 63
Query: 85 MAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIRKICVVHL--FNSNRV 142
E L +F R + V + G V F+ +++R+ + L F +
Sbjct: 64 AVREALVDQAEEFSGRGEQATFDWV-FKGYGVVFS-NGERAKQLRRFSIATLRDFGVGKR 121
Query: 143 QSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFGKSYEVEDQ 198
I+E E LI+ + + A+ ++ + + S++ I FG ++ +D+
Sbjct: 122 GIEERIQE-EAGFLIDALRGTGGAN--IDPTFFLSRTVSNVISSIVFGDRFDYKDK 174
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 7/176 (3%)
Query: 25 KTIKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAK 84
KT LPPGP LPFIGN Q + N ++S++YGP+ ++ LG ++V+
Sbjct: 4 KTSSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHD 63
Query: 85 MAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIRKICVVHL--FNSNRV 142
E L +F R + V + G V F+ +++R+ + L F +
Sbjct: 64 AVREALVDQAEEFSGRGEQATFDWV-FKGYGVVFS-NGERAKQLRRFSIATLRDFGVGKR 121
Query: 143 QSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFGKSYEVEDQ 198
I+E E LI+ + + A+ ++ + + S++ I FG ++ +D+
Sbjct: 122 GIEERIQE-EAGFLIDALRGTGGAN--IDPTFFLSRTVSNVISSIVFGDRFDYKDK 174
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 7/176 (3%)
Query: 25 KTIKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAK 84
KT LPPGP LPFIGN Q + N ++S++YGP+ ++ LG ++V+
Sbjct: 4 KTSSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHD 63
Query: 85 MAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIRKICVVHL--FNSNRV 142
E L +F R + V + G V F+ +++R+ + L F +
Sbjct: 64 AVREALVDQAEEFSGRGEQATFDWV-FKGYGVVFS-NGERAKQLRRFSIATLRDFGVGKR 121
Query: 143 QSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFGKSYEVEDQ 198
I+E E LI+ + + A+ ++ + + S++ I FG ++ +D+
Sbjct: 122 GIEERIQE-EAGFLIDALRGTGGAN--IDPTFFLSRTVSNVISSIVFGDRFDYKDK 174
>pdb|3QZ1|A Chain A, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|B Chain B, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|C Chain C, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|D Chain D, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
Length = 496
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 10/168 (5%)
Query: 23 RYKTIKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSS 82
R+K ++++ LPP G LH + P + L+++ GP+ LRLG ++V++S
Sbjct: 22 RWK-LRNLHLPPL-----VPGFLHLLQPNLPIHLL-SLTQKLGPVYRLRLGLQEVVVLNS 74
Query: 83 AKMAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRV 142
+ EE + + F RP + S + VS D++ Y+ W+ +K+ L R
Sbjct: 75 KRTIEEAMIRKWVDFAGRPQIPSYKLVSQRCQDISLGDYSLLWKAHKKLTRSALLLGTR- 133
Query: 143 QSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFG 190
S P + E++ A A PV + + LT SI C + FG
Sbjct: 134 SSMEPWVDQLTQEFCERMRVQAGA--PVTIQKEFSLLTCSIICYLTFG 179
>pdb|3QM4|A Chain A, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3QM4|B Chain B, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3TBG|A Chain A, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|B Chain B, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|C Chain C, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|D Chain D, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TDA|A Chain A, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|B Chain B, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|C Chain C, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|D Chain D, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
Length = 479
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 104/250 (41%), Gaps = 26/250 (10%)
Query: 49 DYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQK 108
D+ N F +L +++G + SL+L P++V++ E L TH RP + Q
Sbjct: 28 DFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQI 87
Query: 109 VSYN--GLDVAFAPYNAYWREIRKICVVHLFNSN-RVQSFRPIREGEVSILIEKVSRSAV 165
+ + V A Y WRE R+ V L N +S E + L +
Sbjct: 88 LGFGPRSQGVFLARYGPAWREQRRFSVSTLRNLGLGKKSLEQWVTEEAACLCAAFANH-- 145
Query: 166 ASKPVNLSELMKSLTSSITCRIGFGKSYEVEDQGISERSRFGALLTETQALV---VGFF- 221
+ +P + L+ S++ + G+ +E +D RF LL Q + GF
Sbjct: 146 SGRPFRPNGLLDKAVSNVIASLTCGRRFEYDD------PRFLRLLDLAQEGLKEESGFLR 199
Query: 222 -VTDYFPSIGWVDNITGMIRRLERNF-KEFDAFHQELIEEH---LDPARIKTDQEDIVDV 276
V + P + + + G + R ++ F + D EL+ EH DPA+ D +
Sbjct: 200 EVLNAVPVLLHIPALAGKVLRFQKAFLTQLD----ELLTEHRMTWDPAQPPRDLTEA--F 253
Query: 277 LLQIWKQRGS 286
L ++ K +G+
Sbjct: 254 LAEMEKAKGN 263
>pdb|2F9Q|A Chain A, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|B Chain B, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|C Chain C, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|D Chain D, Crystal Structure Of Human Cytochrome P450 2d6
Length = 479
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 103/250 (41%), Gaps = 26/250 (10%)
Query: 49 DYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQK 108
D+ N F +L +++G + SL+L P++V++ E L TH RP + Q
Sbjct: 28 DFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQI 87
Query: 109 VSYN--GLDVAFAPYNAYWREIRKICVVHLFNSN-RVQSFRPIREGEVSILIEKVSRSAV 165
+ + V A Y WRE R+ V L N +S E + L +
Sbjct: 88 LGFGPRSQGVFLARYGPAWREQRRFSVSTLRNLGLGKKSLEQWVTEEAACLCAAFANH-- 145
Query: 166 ASKPVNLSELMKSLTSSITCRIGFGKSYEVEDQGISERSRFGALLTETQALV---VGFF- 221
+ +P + L+ S++ + G+ +E +D RF LL Q + GF
Sbjct: 146 SGRPFRPNGLLDKAVSNVIASLTCGRRFEYDD------PRFLRLLDLAQEGLKEESGFLR 199
Query: 222 -VTDYFPSIGWVDNITGMIRRLERNF-KEFDAFHQELIEEH---LDPARIKTDQEDIVDV 276
V + P + + G + R ++ F + D EL+ EH DPA+ D +
Sbjct: 200 EVLNAVPVDRHIPALAGKVLRFQKAFLTQLD----ELLTEHRMTWDPAQPPRDLTEA--F 253
Query: 277 LLQIWKQRGS 286
L ++ K +G+
Sbjct: 254 LAEMEKAKGN 263
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 23 RYKTIKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSS 82
R + K + PP P G P +G++ NP R+S++YG ++ +R+GS P+LV+S
Sbjct: 8 RPRVPKGLKSPPEPWGWPLLGHVLTLG-KNPHLALSRMSQRYGDVLQIRIGSTPVLVLSR 66
Query: 83 AKMAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFA 119
+ L F RP L + ++ +G + F+
Sbjct: 67 LDTIRQALVRQGDDFKGRPDLYTSTLIT-DGQSLTFS 102
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3C6G|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3DL9|A Chain A, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
pdb|3DL9|B Chain B, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
Length = 479
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 94/217 (43%), Gaps = 25/217 (11%)
Query: 53 PQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQKVSYN 112
P Y + S+ YG + SL LG + +V++ + +E L F RP L K++
Sbjct: 36 PHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLFMKMTKM 95
Query: 113 GLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVS----ILIE-KVSRSAVAS 167
G + + Y W + R++ V SFR G+ S IL E K A+ +
Sbjct: 96 G-GLLNSRYGRGWVDHRRLAV---------NSFRYFGYGQKSFESKILEETKFFNDAIET 145
Query: 168 ---KPVNLSELMKSLTSSITCRIGFGKSYEVEDQGISERSRFGALLTETQALV--VGFFV 222
+P + +L+ + S+IT I FG+ + ED ++ L +E L F+
Sbjct: 146 YKGRPFDFKQLITNAVSNITNLIIFGERFTYED---TDFQHMIELFSENVELAASASVFL 202
Query: 223 TDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEE 259
+ FP IG + G ++L RN F LIE+
Sbjct: 203 YNAFPWIGILP--FGKHQQLFRNAAVVYDFLSRLIEK 237
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
pdb|3CZH|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
Length = 481
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 94/217 (43%), Gaps = 25/217 (11%)
Query: 53 PQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQKVSYN 112
P Y + S+ YG + SL LG + +V++ + +E L F RP L K++
Sbjct: 36 PHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLFMKMTKM 95
Query: 113 GLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVS----ILIE-KVSRSAVAS 167
G + + Y W + R++ V SFR G+ S IL E K A+ +
Sbjct: 96 G-GLLNSRYGRGWVDHRRLAV---------NSFRYFGYGQKSFESKILEETKFFNDAIET 145
Query: 168 ---KPVNLSELMKSLTSSITCRIGFGKSYEVEDQGISERSRFGALLTETQALV--VGFFV 222
+P + +L+ + S+IT I FG+ + ED ++ L +E L F+
Sbjct: 146 YKGRPFDFKQLITNAVSNITNLIIFGERFTYED---TDFQHMIELFSENVELAASASVFL 202
Query: 223 TDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEE 259
+ FP IG + G ++L RN F LIE+
Sbjct: 203 YNAFPWIGILP--FGKHQQLFRNAAVVYDFLSRLIEK 237
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 9/159 (5%)
Query: 34 PGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVL--K 91
PGP LPF+GN+ + + + K+YG + G P+L ++ M + VL +
Sbjct: 19 PGPTPLPFLGNILSY-HKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKE 77
Query: 92 THDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREG 151
+ + RP V + ++ A + W+ +R + + F S +++ PI
Sbjct: 78 CYSVFTNRRPF----GPVGFMKSAISIA-EDEEWKRLRSL-LSPTFTSGKLKEMVPIIAQ 131
Query: 152 EVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFG 190
+L+ + R A KPV L ++ + + + FG
Sbjct: 132 YGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFG 170
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 64/157 (40%), Gaps = 5/157 (3%)
Query: 34 PGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTH 93
PGP LPF+GN+ + + + K+YG + G P+L ++ M + VL
Sbjct: 18 PGPTPLPFLGNILSY-HKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKE 76
Query: 94 DLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEV 153
+ + + +A + W+ +R + + F S +++ PI
Sbjct: 77 CYSVFTNRRPFGPVGFMKSAISIA---EDEEWKRLRSL-LSPTFTSGKLKEMVPIIAQYG 132
Query: 154 SILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFG 190
+L+ + R A KPV L ++ + + + FG
Sbjct: 133 DVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFG 169
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 64/157 (40%), Gaps = 5/157 (3%)
Query: 34 PGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTH 93
PGP LPF+GN+ + + + K+YG + G P+L ++ M + VL
Sbjct: 17 PGPTPLPFLGNILSY-HKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKE 75
Query: 94 DLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEV 153
+ + + +A + W+ +R + + F S +++ PI
Sbjct: 76 CYSVFTNRRPFGPVGFMKSAISIA---EDEEWKRLRSL-LSPTFTSGKLKEMVPIIAQYG 131
Query: 154 SILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFG 190
+L+ + R A KPV L ++ + + + FG
Sbjct: 132 DVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFG 168
>pdb|1M5Y|A Chain A, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
pdb|1M5Y|B Chain B, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
pdb|1M5Y|C Chain C, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
pdb|1M5Y|D Chain D, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
Length = 408
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 11/103 (10%)
Query: 108 KVSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVAS 167
+++Y+GL+ YN Y +IRK ++ +N V+ I EV L ++V AS
Sbjct: 97 RLAYDGLN-----YNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDAS 151
Query: 168 KPVNLSELMKSLTSSITCRIGFGKSYEVEDQ--GISERSRFGA 208
+NLS ++ L + T + E E Q I +++R GA
Sbjct: 152 TELNLSHILIPLPENPTS----DQVNEAESQARAIVDQARNGA 190
>pdb|2PV3|A Chain A, Crystallographic Structure Of Sura Fragment Lacking The
Second Peptidyl-prolyl Isomerase Domain Complexed With
Peptide Nftlkfwdifrk
pdb|2PV3|B Chain B, Crystallographic Structure Of Sura Fragment Lacking The
Second Peptidyl-prolyl Isomerase Domain Complexed With
Peptide Nftlkfwdifrk
Length = 299
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 11/103 (10%)
Query: 108 KVSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVAS 167
+++Y+GL+ YN Y +IRK ++ +N V+ I EV L ++V AS
Sbjct: 97 RLAYDGLN-----YNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDAS 151
Query: 168 KPVNLSELMKSLTSSITCRIGFGKSYEVEDQ--GISERSRFGA 208
+NLS ++ L + T + E E Q I +++R GA
Sbjct: 152 TELNLSHILIPLPENPTS----DQVNEAESQARAIVDQARNGA 190
>pdb|2VE3|A Chain A, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE3|B Chain B, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE4|A Chain A, Substrate Free Cyanobacterial Cyp120a1
pdb|2VE4|B Chain B, Substrate Free Cyanobacterial Cyp120a1
Length = 444
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 26 TIKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKM 85
+ S+ +PPG GLP++G ++ N ++ + +Q+GP+ RL ++ +S A +
Sbjct: 7 NLNSLPIPPGDFGLPWLG--ETLNFLNDGDFGKKRQQQFGPIFKTRLFGKNVIFISGA-L 63
Query: 86 AEEVLKTHD 94
A L T +
Sbjct: 64 ANRFLFTKE 72
>pdb|3T5T|A Chain A, Vall From Streptomyces Hygroscopicus In Apo Form
pdb|3T5T|B Chain B, Vall From Streptomyces Hygroscopicus In Apo Form
Length = 496
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 78 LVVSSAKMAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNA--YWREIRK 130
++ SSA+ A+ V HD Q PALL +Q+ L P+ + YWR + K
Sbjct: 141 ILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADYWRILPK 195
>pdb|4F96|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F96|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F97|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F97|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F9F|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|C Chain C, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|D Chain D, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|E Chain E, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|F Chain F, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|3VDM|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDM|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDN|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
Length = 497
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 78 LVVSSAKMAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNA--YWREIRK 130
++ SSA+ A+ V HD Q PALL +Q+ L P+ + YWR + K
Sbjct: 142 ILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADYWRILPK 196
>pdb|3T7D|A Chain A, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
pdb|3T7D|B Chain B, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
Length = 497
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 78 LVVSSAKMAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNA--YWREIRK 130
++ SSA+ A+ V HD Q PALL +Q+ L P+ + YWR + K
Sbjct: 142 ILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADYWRILPK 196
>pdb|3U6C|A Chain A, Mutm Set 1 Apgo
pdb|3U6D|A Chain A, Mutm Set 1 Gpgo
pdb|3U6E|A Chain A, Mutm Set 1 Tpgo
pdb|3U6L|A Chain A, Mutm Set 2 Cpgo
pdb|3U6M|A Chain A, Structural Effects Of Sequence Context On Lesion
Recognition By Mutm
pdb|3U6O|A Chain A, Mutm Set 1 Apg
pdb|3U6P|A Chain A, Mutm Set 1 Gpg
pdb|3U6Q|A Chain A, Mutm Set 2 Apgo
pdb|3U6S|A Chain A, Mutm Set 1 Tpg
Length = 273
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 125 WREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSIT 184
+R++RK +H++ P+ E L S + +A + V +K+L T
Sbjct: 107 YRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCT 166
Query: 185 CRIGFGKSY 193
GFG Y
Sbjct: 167 VVAGFGNIY 175
>pdb|3GPX|A Chain A, Sequence-Matched Mutm Interrogation Complex 4 (Ic4)
pdb|3GQ3|A Chain A, Mutm Encountering An Intrahelical 8-Oxoguanine (Oxog)
Lesion In Ec5- Loop Deletion Complex
Length = 257
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 125 WREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSIT 184
+R++RK +H++ P+ E L S + +A + V +K+L T
Sbjct: 107 YRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCT 166
Query: 185 CRIGFGKSY 193
GFG Y
Sbjct: 167 VVAGFGNIY 175
>pdb|3GPP|A Chain A, Mutm Encountering An Intrahelical 8-Oxoguanine (Oxog)
Lesion In Ec3- T224p Complex
pdb|3GQ5|A Chain A, Sequence-Matched Mutm Interrogation Complex 5 (Ic5)
Length = 273
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 125 WREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSIT 184
+R++RK +H++ P+ E L S + +A + V +K+L T
Sbjct: 107 YRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCT 166
Query: 185 CRIGFGKSY 193
GFG Y
Sbjct: 167 VVAGFGNIY 175
>pdb|3GP1|A Chain A, Mutm Encountering An Intrahelical 8-Oxoguanine (Oxog)
Lesion In Ec3- V222p Complex
pdb|3SBJ|A Chain A, Mutm Slanted Complex 7
Length = 273
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 125 WREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSIT 184
+R++RK +H++ P+ E L S + +A + V +K+L T
Sbjct: 107 YRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCT 166
Query: 185 CRIGFGKSY 193
GFG Y
Sbjct: 167 VVAGFGNIY 175
>pdb|2F5Q|A Chain A, Catalytically Inactive (E3q) Mutm Crosslinked To Oxog:c
Containing Dna Cc2
pdb|2F5S|A Chain A, Catalytically Inactive (e3q) Mutm Crosslinked To Oxog:c
Containing Dna Cc1
Length = 274
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 125 WREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSIT 184
+R++RK +H++ P+ E L S + +A + V +K+L T
Sbjct: 108 YRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCT 167
Query: 185 CRIGFGKSY 193
GFG Y
Sbjct: 168 VVAGFGNIY 176
>pdb|3GPU|A Chain A, Mutm Encountering An Intrahelical 8-Oxoguanine (Oxog)
Lesion In Ec4- Loop Deletion Complex
Length = 256
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 125 WREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSIT 184
+R++RK +H++ P+ E L S + +A + V +K+L T
Sbjct: 107 YRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCT 166
Query: 185 CRIGFGKSY 193
GFG Y
Sbjct: 167 VVAGFGNIY 175
>pdb|3GO8|A Chain A, Mutm Encountering An Intrahelical 8-Oxoguanine (Oxog)
Lesion In Ec3- Loop Deletion Complex
Length = 257
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 125 WREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSIT 184
+R++RK +H++ P+ E L S + +A + V +K+L T
Sbjct: 107 YRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCT 166
Query: 185 CRIGFGKSY 193
GFG Y
Sbjct: 167 VVAGFGNIY 175
>pdb|3GPY|A Chain A, Sequence-Matched Mutm Lesion Recognition Complex 3 (Lrc3)
pdb|3GQ4|A Chain A, Sequence-matched Mutm Lesion Recognition Complex 5 (lrc5)
Length = 273
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 125 WREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSIT 184
+R++RK +H++ P+ E L S + +A + V +K+L T
Sbjct: 107 YRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCT 166
Query: 185 CRIGFGKSY 193
GFG Y
Sbjct: 167 VVAGFGNIY 175
>pdb|3SAR|A Chain A, Mutm Slanted Complex 1
pdb|3SAU|A Chain A, Mutm Interrogation Complex 6
pdb|3SAV|A Chain A, Mutm Slanted Complex 8
Length = 273
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 125 WREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSIT 184
+R++RK +H++ P+ E L S + +A + V +K+L T
Sbjct: 107 YRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCT 166
Query: 185 CRIGFGKSY 193
GFG Y
Sbjct: 167 VVAGFGNIY 175
>pdb|2F5N|A Chain A, Mutm Crosslinked To Undamaged Dna Sampling A:t Base Pair
Ic1
pdb|2F5O|A Chain A, Mutm Crosslinked To Undamaged Dna Sampling G:c Base Pair
Ic3
pdb|2F5P|A Chain A, Mutm Crosslinked To Undamaged Dna Sampling A:t Base Pair
Ic2
Length = 274
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 125 WREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSIT 184
+R++RK +H++ P+ E L S + +A + V +K+L T
Sbjct: 108 YRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCT 167
Query: 185 CRIGFGKSY 193
GFG Y
Sbjct: 168 VVAGFGNIY 176
>pdb|4G4O|A Chain A, Mutm Containing M77a Mutation Bound To Oxog-containing Dna
Length = 273
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 125 WREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSIT 184
+R++RK +H++ P+ E L S + +A + V +K+L T
Sbjct: 107 YRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCT 166
Query: 185 CRIGFGKSY 193
GFG Y
Sbjct: 167 VVAGFGNIY 175
>pdb|4G4N|A Chain A, Mutm Containing M77a Mutation Bound To Undamaged Dna
Length = 273
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 125 WREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSIT 184
+R++RK +H++ P+ E L S + +A + V +K+L T
Sbjct: 107 YRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCT 166
Query: 185 CRIGFGKSY 193
GFG Y
Sbjct: 167 VVAGFGNIY 175
>pdb|4G4R|A Chain A, Mutm Containing F114a Mutation Bound To Oxog-containing
Dna
Length = 273
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 125 WREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSIT 184
+R++RK +H++ P+ E L S + +A + V +K+L T
Sbjct: 107 YRDVRKAGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCT 166
Query: 185 CRIGFGKSY 193
GFG Y
Sbjct: 167 VVAGFGNIY 175
>pdb|4G4Q|A Chain A, Mutm Containing F114a Mutation Bound To Undamaged Dna
Length = 273
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 125 WREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSIT 184
+R++RK +H++ P+ E L S + +A + V +K+L T
Sbjct: 107 YRDVRKAGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCT 166
Query: 185 CRIGFGKSY 193
GFG Y
Sbjct: 167 VVAGFGNIY 175
>pdb|1R2Y|A Chain A, Mutm (Fpg) Bound To 8-Oxoguanine (Oxog) Containing Dna
pdb|1R2Z|A Chain A, Mutm (Fpg) Bound To 5,6-Dihydrouracil (Dhu) Containing Dna
Length = 274
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 125 WREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSIT 184
+R++RK +H++ P+ E L S + +A + V +K+L T
Sbjct: 108 YRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDQT 167
Query: 185 CRIGFGKSY 193
GFG Y
Sbjct: 168 VVAGFGNIY 176
>pdb|1L1T|A Chain A, Mutm (Fpg) Bound To Abasic-Site Containing Dna
pdb|1L1Z|A Chain A, Mutm (Fpg) Covalent-Dna Intermediate
pdb|1L2B|A Chain A, Mutm (Fpg) Dna End-Product Structure
pdb|1L2C|A Chain A, Mutm (Fpg)-Dna Estranged Thymine Mismatch Recognition
Complex
pdb|1L2D|A Chain A, Mutm (fpg)-dna Estranged Guanine Mismatch Recognition
Complex
Length = 274
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 125 WREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSIT 184
+R++RK +H++ P+ E L S + +A + V +K+L T
Sbjct: 108 YRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDQT 167
Query: 185 CRIGFGKSY 193
GFG Y
Sbjct: 168 VVAGFGNIY 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,320,004
Number of Sequences: 62578
Number of extensions: 316055
Number of successful extensions: 789
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 714
Number of HSP's gapped (non-prelim): 54
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)