Query 021726
Match_columns 308
No_of_seqs 131 out of 1226
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 08:23:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021726.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021726hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swz_A Steroid 17-alpha-hydrox 100.0 4.6E-37 1.6E-41 286.7 25.3 271 28-307 5-286 (494)
2 3pm0_A Cypib1, cytochrome P450 100.0 2.6E-36 8.8E-41 282.2 18.6 276 26-307 4-292 (507)
3 3qz1_A Steroid 21-hydroxylase; 100.0 6.2E-35 2.1E-39 272.3 16.0 263 27-307 25-292 (496)
4 3e6i_A CYPIIE1, P450-J, cytoch 100.0 1.9E-33 6.5E-38 260.8 24.1 268 27-307 6-280 (476)
5 2hi4_A Cytochrome P450 1A2; CY 100.0 6.4E-34 2.2E-38 265.7 20.8 270 29-307 12-295 (495)
6 3tbg_A Cytochrome P450 2D6; mo 100.0 2.2E-33 7.5E-38 260.5 24.0 275 24-307 3-285 (479)
7 3czh_A Cytochrome P450 2R1; vi 100.0 1.4E-33 4.7E-38 262.6 22.0 272 26-307 7-286 (481)
8 1r9o_A Cytochrome P450 2C9; mo 100.0 3.8E-33 1.3E-37 259.2 21.9 272 24-307 4-282 (477)
9 3s79_A Cytochrome P450 19A1; o 100.0 1.3E-33 4.3E-38 263.9 18.1 259 29-307 43-308 (503)
10 1po5_A Cytochrome P450 2B4; ox 100.0 5.4E-33 1.9E-37 258.2 21.7 269 27-307 6-281 (476)
11 2fdv_A Cytochrome P450 2A6; CY 100.0 7.6E-33 2.6E-37 257.2 22.7 268 28-307 7-281 (476)
12 3nxu_A Cytochrome P450 3A4; al 100.0 4.2E-34 1.4E-38 265.9 12.2 265 31-307 14-285 (485)
13 3gw9_A Sterol 14alpha-demethyl 100.0 7E-33 2.4E-37 255.1 16.0 261 30-307 2-266 (450)
14 3ld6_A Lanosterol 14-alpha dem 100.0 1.3E-32 4.4E-37 254.6 15.0 256 28-307 8-265 (461)
15 3k9v_A 1,25-dihydroxyvitamin D 100.0 4.6E-31 1.6E-35 245.0 21.8 262 30-307 23-296 (482)
16 2ij2_A Cytochrome P450 BM3; mo 100.0 6.2E-30 2.1E-34 237.3 21.7 262 31-307 3-266 (470)
17 3i3k_A Lanosterol 14-alpha dem 100.0 8.9E-31 3E-35 242.1 15.0 260 24-307 4-265 (461)
18 2cib_A Cytochrome P450 51; hem 100.0 8.9E-30 3E-34 235.3 18.4 254 30-307 3-258 (455)
19 2ve3_A Putative cytochrome P45 100.0 4.8E-29 1.6E-33 229.7 18.7 247 29-307 10-256 (444)
20 3n9y_A Cholesterol SIDE-chain 100.0 6.2E-29 2.1E-33 231.1 17.7 262 30-307 8-288 (487)
21 3dbg_A Putative cytochrome P45 100.0 2.7E-29 9.2E-34 232.7 13.0 252 30-307 22-276 (467)
22 2cd8_A Cytochrome P450 monooxy 100.0 7.4E-28 2.5E-32 221.3 21.0 237 28-307 23-265 (436)
23 3v8d_A Cholesterol 7-alpha-mon 99.9 4.8E-28 1.6E-32 225.6 9.4 259 25-307 7-270 (491)
24 3mdm_A Cholesterol 24-hydroxyl 99.9 8.1E-26 2.8E-30 208.5 21.5 243 50-307 9-256 (456)
25 1jfb_A Nitric-oxide reductase 99.9 1.8E-25 6.1E-30 203.4 21.2 235 32-307 2-242 (404)
26 1cpt_A Cytochrome P450-TERP; o 99.9 2.1E-25 7.3E-30 204.4 19.4 249 27-307 2-269 (428)
27 1ued_A P450 OXYC, P450 monooxy 99.9 1.6E-24 5.5E-29 197.3 19.4 230 27-307 6-247 (406)
28 2zbx_A Cytochrome P450-SU1; be 99.9 2E-23 6.7E-28 190.5 22.7 232 31-307 5-246 (412)
29 3dax_A Cytochrome P450 7A1; ch 99.9 2.9E-25 9.9E-30 206.6 9.4 255 28-307 10-270 (491)
30 2zwu_A Camphor 5-monooxygenase 99.9 1.4E-23 4.8E-28 191.6 18.4 235 25-307 5-251 (415)
31 1izo_A P450bsbeta, cytochrome 99.9 4.5E-23 1.6E-27 188.2 21.3 234 38-306 7-243 (417)
32 3awm_A Fatty acid alpha-hydrox 99.9 2.7E-23 9.2E-28 189.6 19.0 236 33-306 4-242 (415)
33 1n97_A CYP175A1; electron tran 99.9 9.7E-25 3.3E-29 197.6 8.6 221 34-307 2-223 (389)
34 1s1f_A Putative cytochrome P45 99.9 8.4E-23 2.9E-27 185.9 21.1 229 30-306 7-243 (406)
35 3ivy_A Cytochrome P450 CYP125; 99.9 5.8E-23 2E-27 188.5 18.1 237 30-307 17-270 (433)
36 3b6h_A Prostacyclin synthase; 99.9 1.7E-23 5.7E-28 195.2 13.6 258 27-307 14-275 (498)
37 3oo3_A OXY protein; cytochrome 99.9 2.3E-22 7.7E-27 181.7 20.2 214 50-307 11-228 (384)
38 3aba_A Cytochrome P450; oxidor 99.9 4E-22 1.4E-26 181.3 21.8 215 50-307 18-239 (403)
39 3abb_A CYP105D6, cytochrome P4 99.9 2E-22 6.8E-27 183.6 18.0 214 50-307 23-245 (408)
40 3tkt_A Cytochrome P450; aromat 99.9 1.7E-22 5.8E-27 186.3 17.7 228 53-307 47-291 (450)
41 2wm5_A CYP124, putative cytoch 99.9 1.1E-21 3.6E-26 180.2 21.3 222 51-307 44-276 (435)
42 2z36_A MOXA, cytochrome P450 t 99.9 2.4E-21 8E-26 176.7 22.1 230 31-307 7-247 (413)
43 3ejb_B Biotin biosynthesis cyt 99.9 1.6E-21 5.4E-26 177.3 20.4 220 50-307 12-236 (404)
44 3tyw_A Putative cytochrome P45 99.9 1.9E-21 6.5E-26 177.5 20.8 215 50-307 28-251 (417)
45 3a4g_A Vitamin D hydroxylase; 99.9 1.8E-21 6.3E-26 177.3 20.0 214 50-307 19-238 (411)
46 3b98_A Prostaglandin I2 syntha 99.9 1.1E-22 3.9E-27 188.3 12.0 248 27-307 14-266 (475)
47 1odo_A Putative cytochrome P45 99.9 7.3E-22 2.5E-26 179.8 16.9 220 50-307 14-244 (408)
48 2y5n_A MYCG, P-450-like protei 99.9 2.2E-21 7.5E-26 177.1 20.1 216 50-307 36-256 (417)
49 4fb2_A P450CIN; heme, monooxyg 99.9 8E-22 2.7E-26 178.9 17.0 214 50-307 18-234 (398)
50 2jjn_A Cytochrome P450 113A1; 99.9 1.6E-21 5.5E-26 177.7 17.0 215 51-307 28-243 (411)
51 3r9b_A Cytochrome P450 164A2; 99.9 1.7E-21 5.8E-26 177.8 17.1 222 50-307 28-258 (418)
52 1z8o_A 6-deoxyerythronolide B 99.9 3.3E-21 1.1E-25 175.3 18.2 215 50-307 13-243 (404)
53 1q5d_A P450 epoxidase; cytochr 99.9 2.3E-21 7.8E-26 177.1 16.4 221 50-307 25-256 (419)
54 2z3t_A Cytochrome P450; monoxy 99.9 1.9E-20 6.4E-25 171.4 21.8 221 50-307 19-256 (425)
55 1gwi_A CYP154C1, cytochrome P4 99.9 8.1E-21 2.8E-25 173.1 18.6 215 50-307 16-244 (411)
56 2xkr_A CYP142, putative cytoch 99.9 1.8E-20 6.2E-25 170.0 20.6 215 50-307 17-232 (398)
57 3dsk_A Cytochrome P450 74A, ch 99.9 9E-22 3.1E-26 183.3 11.2 163 28-194 25-204 (495)
58 3lxh_A Cytochrome P450; heme, 99.9 2.3E-20 8E-25 170.5 19.9 219 51-307 38-258 (421)
59 2uuq_A CYP130, cytochrome P450 99.9 2.4E-20 8.2E-25 170.1 18.5 216 51-307 25-252 (414)
60 2xbk_A PIMD protein; epoxidati 99.8 1.5E-19 5.1E-24 164.3 21.8 209 50-307 25-243 (404)
61 2dkk_A Cytochrome P450; CYP158 99.8 3.8E-20 1.3E-24 168.6 17.8 213 50-306 26-246 (411)
62 3nc3_A Cytochrome P450 CYPX; c 99.8 1.7E-20 6E-25 172.4 14.3 218 51-307 53-271 (441)
63 3oft_A Cytochrome P450, CYP101 99.8 4.8E-20 1.7E-24 167.0 16.5 213 50-307 23-236 (396)
64 3buj_A CALO2; heme, iron, meta 99.8 8.3E-20 2.8E-24 165.6 17.1 215 51-307 13-235 (397)
65 1lfk_A OXYB, P450 monooxygenas 99.8 1.3E-19 4.3E-24 164.5 16.5 206 58-307 20-238 (398)
66 3rwl_A Cytochrome P450 alkane 99.8 1.2E-18 4E-23 159.5 21.6 220 51-307 38-267 (426)
67 3mgx_A Putative P450 monooxyge 99.8 1.9E-19 6.4E-24 164.2 15.3 214 51-307 37-256 (415)
68 1n40_A P450 MT2, cytochrome P4 99.8 2.6E-19 8.8E-24 162.3 14.9 210 50-307 15-235 (396)
69 3dan_A Cytochrome P450 74A2; A 99.8 7.4E-19 2.5E-23 162.5 16.5 163 29-195 7-187 (473)
70 3b4x_A 367AA long hypothetical 99.8 2.8E-18 9.6E-23 154.0 15.4 201 53-307 1-212 (367)
71 3p3o_A Cytochrome P450; monoox 99.8 5.1E-19 1.7E-23 161.4 9.7 219 50-307 32-255 (416)
72 2wiy_A XPLA-heme, cytochrome P 99.8 1.1E-17 3.8E-22 151.4 18.0 216 51-307 20-235 (394)
73 2rfb_A Cytochrome P450; heme, 99.8 3.5E-18 1.2E-22 151.9 13.3 188 62-307 2-190 (343)
74 1io7_A Cytochrome P450 CYP119; 99.8 8.7E-18 3E-22 150.8 14.6 200 53-307 1-211 (368)
75 4dnj_A Putative cytochrome P45 99.6 2.5E-14 8.5E-19 130.2 15.2 229 37-307 18-253 (412)
76 4dxy_A Cytochrome P450, CYP101 99.5 9.6E-13 3.3E-17 119.8 22.0 219 51-307 37-257 (417)
77 2yjn_B Erycii, DTDP-4-keto-6-d 98.2 4E-09 1.4E-13 94.5 -11.1 133 32-194 35-180 (381)
78 3lqv_A PRE-mRNA branch site pr 86.1 3.9 0.00013 28.7 7.9 67 32-101 3-76 (115)
79 2krb_A Eukaryotic translation 84.1 4.6 0.00016 26.3 7.0 59 41-100 5-75 (81)
80 1s79_A Lupus LA protein; RRM, 83.8 3.2 0.00011 28.9 6.3 60 39-101 13-80 (103)
81 1iqt_A AUF1, heterogeneous nuc 81.0 2.5 8.7E-05 27.0 4.6 57 41-100 3-68 (75)
82 2diu_A KIAA0430 protein; struc 79.7 5.2 0.00018 27.6 5.8 61 40-102 12-76 (96)
83 2mss_A Protein (musashi1); RNA 78.1 4.9 0.00017 25.6 5.3 58 41-101 3-69 (75)
84 1whx_A Hypothetical protein ri 74.8 12 0.00042 26.1 7.1 60 40-102 13-76 (111)
85 4fxv_A ELAV-like protein 1; RN 73.6 7.3 0.00025 26.7 5.5 58 41-101 23-90 (99)
86 2nlw_A Eukaryotic translation 72.2 12 0.00041 25.7 6.4 62 38-100 16-89 (105)
87 2dgs_A DAZ-associated protein 72.0 13 0.00044 25.0 6.5 60 39-101 12-80 (99)
88 2dnz_A Probable RNA-binding pr 71.2 18 0.00061 24.0 7.0 61 39-102 7-77 (95)
89 3ex7_B RNA-binding protein 8A; 70.6 16 0.00056 25.8 7.1 60 40-102 25-94 (126)
90 2kxn_B Transformer-2 protein h 70.4 27 0.00092 25.1 8.8 61 38-101 47-117 (129)
91 2kvi_A Nuclear polyadenylated 69.7 13 0.00043 25.0 6.0 61 39-101 12-74 (96)
92 4f25_A Polyadenylate-binding p 69.3 10 0.00036 26.6 5.6 59 40-101 8-74 (115)
93 1p27_B RNA-binding protein 8A; 69.0 15 0.00052 25.0 6.4 59 40-101 26-94 (106)
94 2cqc_A Arginine/serine-rich sp 68.4 14 0.00047 24.6 5.9 64 34-100 12-85 (95)
95 2hvz_A Splicing factor, argini 68.1 12 0.0004 25.4 5.6 58 41-101 4-66 (101)
96 1whw_A Hypothetical protein ri 68.0 19 0.00067 24.1 6.7 60 39-101 10-79 (99)
97 2d9p_A Polyadenylate-binding p 66.9 20 0.0007 24.2 6.7 65 34-101 12-84 (103)
98 3beg_B Splicing factor, argini 66.5 19 0.00066 25.1 6.6 59 40-101 19-80 (115)
99 2dgu_A Heterogeneous nuclear r 66.4 14 0.00049 25.1 5.8 60 39-101 13-74 (103)
100 3mdf_A Peptidyl-prolyl CIS-tra 66.4 19 0.00065 23.2 6.2 60 38-100 8-77 (85)
101 2dnp_A RNA-binding protein 14; 65.9 24 0.00081 23.2 6.7 61 38-101 10-72 (90)
102 4a8x_A RNA-binding protein wit 65.7 16 0.00053 23.8 5.7 58 41-101 8-76 (88)
103 2cq3_A RNA-binding protein 9; 65.6 22 0.00075 24.0 6.6 60 39-101 17-84 (103)
104 1oo0_B CG8781-PA, drosophila Y 65.2 18 0.00063 24.8 6.2 58 40-100 29-96 (110)
105 2cpf_A RNA binding motif prote 65.1 12 0.0004 25.2 5.0 60 39-101 7-79 (98)
106 2do4_A Squamous cell carcinoma 65.1 27 0.00093 23.4 7.0 60 39-101 19-87 (100)
107 3md1_A Nuclear and cytoplasmic 65.0 10 0.00036 24.4 4.6 58 41-101 5-72 (83)
108 2ytc_A PRE-mRNA-splicing facto 64.9 25 0.00086 22.6 7.0 51 39-92 14-67 (85)
109 2dgx_A KIAA0430 protein; RRM d 63.8 18 0.00061 24.3 5.8 59 40-101 12-81 (96)
110 1x5u_A Splicing factor 3B subu 63.8 31 0.0011 23.3 8.3 60 39-101 17-86 (105)
111 2la6_A RNA-binding protein FUS 63.6 29 0.00099 23.2 6.9 60 39-101 15-92 (99)
112 2rs2_A Musashi-1, RNA-binding 63.2 16 0.00055 25.3 5.6 59 39-100 27-94 (109)
113 1x4g_A Nucleolysin TIAR; struc 62.7 20 0.00068 24.6 6.0 59 40-101 28-90 (109)
114 3ucg_A Polyadenylate-binding p 62.2 11 0.00039 24.6 4.5 58 41-101 10-76 (89)
115 1wi8_A EIF-4B, eukaryotic tran 62.1 17 0.00058 24.7 5.5 67 31-101 9-85 (104)
116 2dgt_A RNA-binding protein 30; 62.0 14 0.00049 24.5 4.9 60 39-101 12-73 (92)
117 3bs9_A Nucleolysin TIA-1 isofo 61.9 16 0.00053 23.8 5.1 58 40-100 9-76 (87)
118 2wbr_A GW182, gawky, LD47780P; 61.5 21 0.00071 24.1 5.5 51 38-91 8-61 (89)
119 2fy1_A RNA-binding motif prote 61.4 23 0.0008 24.8 6.2 60 39-101 9-77 (116)
120 3s7r_A Heterogeneous nuclear r 61.3 11 0.00037 24.7 4.1 56 39-97 13-77 (87)
121 2kn4_A Immunoglobulin G-bindin 61.2 42 0.0014 24.7 8.0 60 39-101 72-141 (158)
122 2i2y_A Fusion protein consists 60.9 46 0.0016 24.3 8.2 60 39-101 75-139 (150)
123 2jvo_A Nucleolar protein 3; nu 60.1 14 0.00049 25.6 4.8 58 41-101 35-94 (108)
124 2jvr_A Nucleolar protein 3; RN 59.6 16 0.00056 25.6 5.0 59 39-100 30-95 (111)
125 1nu4_A U1A RNA binding domain; 59.3 25 0.00086 23.3 5.9 59 39-100 10-79 (97)
126 2dgv_A HnRNP M, heterogeneous 59.1 35 0.0012 22.3 7.0 59 40-101 11-77 (92)
127 2cph_A RNA binding motif prote 58.8 39 0.0013 22.8 9.1 60 39-101 17-88 (107)
128 2pe8_A Splicing factor 45; RRM 58.3 16 0.00054 25.4 4.7 69 33-101 4-85 (105)
129 2dh8_A DAZ-associated protein 58.2 21 0.00071 24.3 5.4 60 39-101 18-86 (105)
130 1uaw_A Mouse-musashi-1; RNP-ty 57.9 11 0.00038 23.8 3.7 58 41-101 4-70 (77)
131 2jwn_A Embryonic polyadenylate 57.8 14 0.00047 26.1 4.5 58 41-101 40-106 (124)
132 3d2w_A TAR DNA-binding protein 56.3 23 0.00079 23.4 5.2 51 36-89 10-64 (89)
133 1x5p_A Negative elongation fac 56.1 31 0.0011 23.0 5.9 58 39-101 17-78 (97)
134 2xnq_A Nuclear polyadenylated 55.9 35 0.0012 22.9 6.2 50 40-91 25-75 (97)
135 2div_A TRNA selenocysteine ass 55.9 35 0.0012 22.7 6.2 63 36-101 8-81 (99)
136 3ns6_A Eukaryotic translation 55.9 27 0.00091 23.6 5.6 61 39-99 8-81 (100)
137 2dhg_A TRNA selenocysteine ass 55.5 44 0.0015 22.4 7.6 65 34-101 6-81 (104)
138 1wg5_A Heterogeneous nuclear r 55.3 40 0.0014 22.8 6.5 60 39-101 17-85 (104)
139 3s8s_A Histone-lysine N-methyl 55.0 25 0.00087 24.4 5.4 59 39-100 8-76 (110)
140 3ctr_A Poly(A)-specific ribonu 54.9 8.3 0.00028 26.7 2.6 47 54-100 19-68 (101)
141 1u6f_A Tcubp1, RNA-binding pro 54.8 27 0.00091 25.2 5.8 58 41-101 46-113 (139)
142 2dnm_A SRP46 splicing factor; 54.7 41 0.0014 22.6 6.4 60 39-101 15-84 (103)
143 2cqd_A RNA-binding region cont 54.1 25 0.00085 24.4 5.3 60 39-101 19-87 (116)
144 2la4_A Nuclear and cytoplasmic 53.7 22 0.00077 23.9 4.9 58 40-100 30-91 (101)
145 1p1t_A Cleavage stimulation fa 53.6 25 0.00085 23.7 5.1 58 40-100 11-78 (104)
146 2dis_A Unnamed protein product 53.1 44 0.0015 22.7 6.5 59 40-101 11-83 (109)
147 1rk8_A CG8781-PA, CG8781-PA pr 53.0 25 0.00084 26.4 5.4 59 40-101 75-143 (165)
148 2dnq_A RNA-binding protein 4B; 52.9 45 0.0015 21.7 7.2 60 39-101 10-71 (90)
149 2cq4_A RNA binding motif prote 52.6 17 0.00057 25.3 4.1 56 41-99 29-93 (114)
150 2err_A Ataxin-2-binding protei 52.2 12 0.0004 26.0 3.2 58 41-101 33-98 (109)
151 3ulh_A THO complex subunit 4; 52.0 27 0.00093 23.7 5.2 58 40-100 32-98 (107)
152 2qfj_A FBP-interacting repress 51.4 49 0.0017 25.5 7.2 58 41-101 32-99 (216)
153 1x4b_A Heterogeneous nuclear r 51.2 13 0.00044 26.0 3.3 59 40-101 30-97 (116)
154 1x5s_A Cold-inducible RNA-bind 51.1 52 0.0018 21.9 7.8 61 38-101 13-83 (102)
155 2cqb_A Peptidyl-prolyl CIS-tra 50.8 23 0.0008 23.8 4.6 63 36-101 11-83 (102)
156 2jrs_A RNA-binding protein 39; 50.4 58 0.002 22.3 6.8 59 40-101 29-97 (108)
157 3p5t_L Cleavage and polyadenyl 50.4 26 0.00088 23.1 4.6 58 41-101 5-74 (90)
158 2hzc_A Splicing factor U2AF 65 50.4 36 0.0012 21.9 5.4 58 40-100 9-80 (87)
159 2e5j_A Methenyltetrahydrofolat 50.3 52 0.0018 21.8 7.3 59 40-101 22-85 (97)
160 2voo_A Lupus LA protein; RNA-b 50.1 19 0.00064 28.1 4.4 58 41-101 113-178 (193)
161 2cpd_A Apobec-1 stimulating pr 50.1 39 0.0013 22.5 5.7 60 39-101 17-80 (99)
162 1x4e_A RNA binding motif, sing 50.1 26 0.00088 22.6 4.6 50 39-91 7-65 (85)
163 2e5h_A Zinc finger CCHC-type a 50.0 51 0.0017 21.5 7.0 51 38-91 17-76 (94)
164 1sjr_A Polypyrimidine tract-bi 49.9 46 0.0016 25.3 6.4 55 41-98 50-110 (164)
165 1h2v_Z 20 kDa nuclear CAP bind 49.6 31 0.0011 25.4 5.5 60 39-101 41-110 (156)
166 1x4c_A Splicing factor, argini 49.6 59 0.002 22.1 7.1 57 40-99 18-77 (108)
167 2e5g_A U6 snRNA-specific termi 49.3 29 0.001 22.9 4.8 58 41-101 12-73 (94)
168 1sjq_A Polypyrimidine tract-bi 49.2 55 0.0019 22.7 6.3 63 36-101 15-83 (105)
169 3n9u_C Cleavage and polyadenyl 49.0 29 0.00099 25.9 5.2 57 41-100 59-127 (156)
170 2ywk_A Putative RNA-binding pr 48.8 26 0.00089 23.1 4.5 59 39-100 18-85 (95)
171 2dgo_A Cytotoxic granule-assoc 48.5 53 0.0018 22.5 6.3 60 39-101 17-86 (115)
172 2cjk_A Nuclear polyadenylated 48.3 39 0.0013 24.8 5.9 59 40-101 90-157 (167)
173 2cqi_A Nucleolysin TIAR; RNA r 48.1 59 0.002 21.7 6.7 60 39-101 17-84 (103)
174 2cpj_A Non-POU domain-containi 48.1 35 0.0012 22.8 5.1 60 39-101 17-80 (99)
175 2ki2_A SS-DNA binding protein 48.1 20 0.00068 23.5 3.7 57 41-101 5-71 (90)
176 1fxl_A Paraneoplastic encephal 47.7 33 0.0011 25.1 5.4 58 41-101 6-73 (167)
177 2bz2_A Negative elongation fac 47.5 34 0.0011 24.2 5.1 57 40-101 42-102 (121)
178 2adc_A Polypyrimidine tract-bi 47.5 66 0.0022 25.4 7.5 60 40-101 37-101 (229)
179 1x4d_A Matrin 3; structural ge 47.1 53 0.0018 22.5 5.9 66 34-101 12-83 (102)
180 2cpz_A CUG triplet repeat RNA- 47.0 47 0.0016 22.9 5.8 60 39-101 27-96 (115)
181 2x1f_A MRNA 3'-END-processing 46.9 48 0.0017 21.9 5.7 57 41-100 6-72 (96)
182 2a3j_A U1 small nuclear ribonu 46.7 67 0.0023 22.9 6.7 62 40-101 32-101 (127)
183 2kt5_A RNA and export factor-b 46.7 44 0.0015 23.4 5.7 58 41-101 39-105 (124)
184 2lea_A Serine/arginine-rich sp 46.4 71 0.0024 22.9 6.9 59 40-101 50-118 (135)
185 1why_A Hypothetical protein ri 46.3 61 0.0021 21.4 9.0 58 38-98 18-79 (97)
186 2cpi_A CCR4-NOT transcription 46.0 25 0.00087 24.3 4.2 61 38-101 16-92 (111)
187 2dng_A Eukaryotic translation 45.9 35 0.0012 23.0 4.9 67 31-101 9-84 (103)
188 2j76_E EIF-4B, EIF4B, eukaryot 45.9 35 0.0012 23.0 4.8 57 41-101 23-89 (100)
189 1l3k_A Heterogeneous nuclear r 45.3 30 0.001 26.3 5.0 59 39-100 15-82 (196)
190 1x4a_A Splicing factor, argini 43.8 73 0.0025 21.6 7.3 59 40-101 25-90 (109)
191 3md3_A Nuclear and cytoplasmic 43.8 33 0.0011 25.1 4.9 58 41-101 4-70 (166)
192 3pgw_S U1-70K; protein-RNA com 43.8 55 0.0019 29.2 7.0 60 39-101 104-173 (437)
193 2cq1_A PTB-like protein L; RRM 43.8 58 0.002 22.2 5.7 61 38-101 16-82 (101)
194 2d9o_A DNAJ (HSP40) homolog, s 43.4 75 0.0026 21.6 6.4 48 53-101 30-81 (100)
195 3zzy_A Polypyrimidine tract-bi 42.9 42 0.0014 24.3 5.0 64 32-98 21-92 (130)
196 2khc_A Testis-specific RNP-typ 42.8 24 0.00083 24.5 3.7 49 41-92 44-101 (118)
197 1x4h_A RNA-binding protein 28; 41.8 79 0.0027 21.4 7.7 51 39-92 17-76 (111)
198 2ad9_A Polypyrimidine tract-bi 41.7 63 0.0022 22.9 5.8 62 38-102 32-99 (119)
199 2cpx_A Hypothetical protein FL 41.4 58 0.002 22.3 5.6 61 38-101 26-96 (115)
200 2ghp_A U4/U6 snRNA-associated 41.2 34 0.0012 28.2 5.0 61 38-101 42-109 (292)
201 1wf1_A RNA-binding protein RAL 40.6 55 0.0019 22.3 5.3 59 40-101 30-91 (110)
202 1l3k_A Heterogeneous nuclear r 40.3 39 0.0013 25.7 4.9 58 41-101 108-174 (196)
203 2ku7_A MLL1 PHD3-CYP33 RRM chi 39.6 99 0.0034 21.9 7.2 49 41-92 67-124 (140)
204 1qm9_A Polypyrimidine tract-bi 39.5 63 0.0022 24.6 6.1 59 41-101 7-70 (198)
205 2cqg_A TDP-43, TAR DNA-binding 39.2 84 0.0029 20.9 6.2 58 39-100 17-83 (103)
206 2xs2_A Deleted in azoospermia- 38.0 15 0.0005 24.9 1.8 58 40-101 12-77 (102)
207 1whv_A Poly(A)-specific ribonu 38.0 33 0.0011 23.6 3.4 38 54-91 29-67 (100)
208 2l6w_A Beta-type platelet-deri 44.1 6.8 0.00023 21.8 0.0 20 5-24 14-33 (39)
209 1b7f_A Protein (SXL-lethal pro 37.6 65 0.0022 23.5 5.7 58 41-101 7-74 (168)
210 2cpe_A RNA-binding protein EWS 36.5 42 0.0014 23.0 4.1 59 40-101 18-94 (113)
211 2hgn_A Heterogeneous nuclear r 36.4 44 0.0015 24.4 4.3 58 40-101 49-114 (139)
212 2dgp_A Bruno-like 4, RNA bindi 36.0 96 0.0033 20.7 7.6 50 39-91 15-73 (106)
213 2cq0_A Eukaryotic translation 36.0 49 0.0017 22.2 4.3 59 39-100 17-85 (103)
214 2f3j_A RNA and export factor b 34.7 1.1E+02 0.0036 23.2 6.5 49 53-101 101-158 (177)
215 2dnh_A Bruno-like 5, RNA bindi 34.6 1E+02 0.0035 20.5 7.4 58 39-99 17-83 (105)
216 3v4m_A Splicing factor U2AF 65 34.5 74 0.0025 21.7 5.1 47 55-101 30-88 (105)
217 3s6e_A RNA-binding protein 39; 34.4 45 0.0015 23.4 3.9 69 33-101 3-84 (114)
218 1x4f_A Matrin 3; structural ge 34.0 75 0.0026 22.2 5.0 65 36-102 24-94 (112)
219 3r27_A HnRNP L, heterogeneous 33.5 1.1E+02 0.0039 20.8 6.8 53 36-91 20-75 (100)
220 1wf0_A TDP-43, TAR DNA-binding 32.3 45 0.0016 21.6 3.5 47 41-90 9-59 (88)
221 2qfj_A FBP-interacting repress 32.3 1.1E+02 0.0036 23.5 6.4 58 41-101 129-196 (216)
222 2dha_A FLJ20171 protein; RRM d 31.8 79 0.0027 22.4 5.0 59 39-100 25-95 (123)
223 2e44_A Insulin-like growth fac 31.6 1.1E+02 0.0037 19.9 8.1 60 39-101 17-83 (96)
224 2do0_A HnRNP M, heterogeneous 31.4 1.2E+02 0.0042 20.5 6.4 60 39-101 17-85 (114)
225 1x5t_A Splicing factor 3B subu 31.2 55 0.0019 21.5 3.9 60 39-101 7-77 (96)
226 1b7f_A Protein (SXL-lethal pro 31.1 1.2E+02 0.0041 22.0 6.3 56 40-98 92-157 (168)
227 2lif_A Core protein P21; signa 37.3 10 0.00035 19.3 0.0 14 9-22 5-18 (27)
228 4f02_A Polyadenylate-binding p 30.8 93 0.0032 24.1 5.8 54 36-92 14-76 (213)
229 2cpy_A RNA-binding protein 12; 30.7 44 0.0015 23.1 3.4 62 36-100 14-84 (114)
230 1jmt_A Splicing factor U2AF 35 30.1 92 0.0031 21.2 4.9 40 62-101 49-97 (104)
231 1wez_A HnRNP H', FTP-3, hetero 30.0 56 0.0019 22.1 3.8 59 39-101 17-83 (102)
232 1wex_A Hypothetical protein (r 30.0 1.3E+02 0.0045 20.4 7.7 62 38-102 16-83 (104)
233 2g4b_A Splicing factor U2AF 65 29.9 94 0.0032 22.7 5.5 59 39-100 96-164 (172)
234 2cq2_A Hypothetical protein LO 28.1 1.6E+02 0.0053 20.7 6.8 54 36-92 24-82 (114)
235 3q2s_C Cleavage and polyadenyl 28.0 81 0.0028 25.1 5.0 57 41-100 72-140 (229)
236 1fxl_A Paraneoplastic encephal 27.6 1.7E+02 0.0058 21.0 6.9 57 41-100 92-158 (167)
237 2hgm_A HNRPF protein, heteroge 26.6 99 0.0034 22.0 4.7 59 39-101 44-112 (126)
238 4f02_A Polyadenylate-binding p 26.4 1.1E+02 0.0037 23.7 5.4 57 41-100 107-171 (213)
239 1wel_A RNA-binding protein 12; 26.0 77 0.0026 22.1 4.1 60 39-101 27-95 (124)
240 2kix_A BM2 protein; channel, t 25.2 77 0.0026 16.2 3.0 22 1-22 1-22 (33)
241 2dit_A HIV TAT specific factor 24.3 1E+02 0.0035 21.0 4.4 69 33-101 11-93 (112)
242 2lmi_A GRSF-1, G-rich sequence 24.3 1.1E+02 0.0037 20.7 4.5 59 39-100 13-82 (107)
243 2ek1_A RNA-binding protein 12; 23.3 28 0.00096 23.0 1.1 60 39-101 17-86 (95)
244 1wrg_A LH-1, light-harvesting 23.1 1.3E+02 0.0045 18.1 4.5 29 8-39 26-54 (55)
245 3nmr_A Cugbp ELAV-like family 22.5 1.6E+02 0.0054 21.4 5.5 50 40-92 98-155 (175)
246 2dnr_A Synaptojanin-1; RRM dom 22.4 1.2E+02 0.0043 20.3 4.2 46 55-100 30-76 (91)
247 2g4b_A Splicing factor U2AF 65 22.4 1.3E+02 0.0045 21.8 5.0 58 41-101 8-79 (172)
248 3ue2_A Poly(U)-binding-splicin 21.6 1.2E+02 0.0042 21.2 4.4 66 36-101 19-100 (118)
249 1wwh_A Nucleoporin 35, nucleop 21.5 2.2E+02 0.0076 20.2 5.9 45 54-98 37-84 (119)
250 2db1_A Heterogeneous nuclear r 21.0 32 0.0011 24.1 1.1 58 40-100 20-88 (118)
251 2dnn_A RNA-binding protein 12; 20.9 97 0.0033 21.3 3.6 57 40-100 19-83 (109)
252 3ibp_A Chromosome partition pr 20.6 22 0.00074 29.7 0.1 93 60-161 140-241 (302)
253 2yh0_A Splicing factor U2AF 65 20.4 1.5E+02 0.0051 22.2 5.1 58 41-101 118-185 (198)
No 1
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=100.00 E-value=4.6e-37 Score=286.75 Aligned_cols=271 Identities=21% Similarity=0.308 Sum_probs=207.8
Q ss_pred CCCCCCCCCCCCcccccccCCCC-CCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcccc
Q 021726 28 KSIALPPGPRGLPFIGNLHQFDY-SNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQ 106 (308)
Q Consensus 28 ~~~~lpPGP~~~P~lGn~~~~~~-~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~ 106 (308)
+..++||||+++|++||++++.. +.++..+.+|+++|||||++++|+.++|||+||++++++|++++..|++||.....
T Consensus 5 ~~~~~PPgP~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~~~~ 84 (494)
T 3swz_A 5 TGAKYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATL 84 (494)
T ss_dssp -------CCBCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCCHHH
T ss_pred CCCCCCCCCCCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCcHHH
Confidence 35578999999999999998843 35789999999999999999999999999999999999999999999999976554
Q ss_pred cccccCCcceEeccCChhHHHHHHHHHHhhCCh--HHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Q 021726 107 QKVSYNGLDVAFAPYNAYWREIRKICVVHLFNS--NRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSIT 184 (308)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~--~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi 184 (308)
..+..++.+++++.+|+.|+++||++ ++.|+. ..++++.+.+.++++.+++.|.+ ..++++|+.+.+.++++|+|
T Consensus 85 ~~~~~~~~gl~~~~~g~~wr~~Rr~~-~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~--~~~~~vd~~~~~~~~t~dvi 161 (494)
T 3swz_A 85 DIASNNRKGIAFADSGAHWQLHRRLA-MATFALFKDGDQKLEKIICQEISTLCDMLAT--HNGQSIDISFPVFVAVTNVI 161 (494)
T ss_dssp HHHTTTTCSSSSSCSSHHHHHHHHHH-HHHTTTTSSSTTCHHHHHHHHHHHHHHHHHH--TTTEEECCHHHHHHHHHHHH
T ss_pred HHhccCCCCeEeCCCCHHHHHHHHHH-HHHHHHhcchHHHHHHHHHHHHHHHHHHHHH--cCCCcccHHHHHHHHHHHHH
Confidence 44444456777777899999999996 788863 44678999999999999999974 35778999999999999999
Q ss_pred HHHHhCCcccccccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCcc
Q 021726 185 CRIGFGKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPA 264 (308)
Q Consensus 185 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 264 (308)
+.++||.+++.++ +....+....+.+........+.+++|++++++ ....+...+..+.+.+++..+++++++..
T Consensus 162 ~~~~fG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~p--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 236 (494)
T 3swz_A 162 SLICFNTSYKNGD---PELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFP--NKTLEKLKSHVKIRNDLLNKILENYKEKF 236 (494)
T ss_dssp HHHHHSCCCCTTC---THHHHHHHHHHHHHHHHCSSSSCCSSCGGGTSC--CSHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHcCCcCCCCC---HHHHHHHHHHHHHHHhcccchHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999886321 122233333344444444445678899998763 33446677778888889999999887754
Q ss_pred CCCCCCCcHHHHHHHhhhhcC--------CCCCCCHHHHHHHHHHHhhccC
Q 021726 265 RIKTDQEDIVDVLLQIWKQRG--------SKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 265 ~~~~~~~dll~~ll~~~~~~~--------~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
. ....+|+++.|+++..+.+ ....+++++|.+++.++++||+
T Consensus 237 ~-~~~~~d~l~~ll~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~ 286 (494)
T 3swz_A 237 R-SDSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGV 286 (494)
T ss_dssp C-TTCCCSHHHHHHHHHHTSCCC----CCSSGGGCHHHHHHHHHHHHHHHH
T ss_pred c-ccchhHHHHHHHHHHHhhhcccccccccccccCHHHHHHHHHHHhhcch
Confidence 2 2346799999998653211 1235899999999999999985
No 2
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-36 Score=282.24 Aligned_cols=276 Identities=22% Similarity=0.338 Sum_probs=190.7
Q ss_pred cCCCCCCCCCCCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCccc
Q 021726 26 TIKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLS 105 (308)
Q Consensus 26 ~~~~~~lpPGP~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~ 105 (308)
+++..++||||+++|++||++++ .++++..+.+|+++||+||++++|+.++|+|+||+++++||.+++..|++||....
T Consensus 4 ~~~~~~~pPgP~~~P~iG~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~ 82 (507)
T 3pm0_A 4 KTSSKGKPPGPFAWPLIGNAAAV-GQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFAS 82 (507)
T ss_dssp -------------------------CCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTSCBCCCCHH
T ss_pred ccCCCCCCcCCCCCCeeCchhhc-CccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCcchH
Confidence 34456789999999999999988 67899999999999999999999999999999999999999999999999987654
Q ss_pred ccccccCCcceEeccCChhHHHHHHHHHHhhCChHH------HhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHH
Q 021726 106 QQKVSYNGLDVAFAPYNAYWREIRKICVVHLFNSNR------VQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSL 179 (308)
Q Consensus 106 ~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~------l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~ 179 (308)
..... .+.+++++.+|+.|+++||++ ++.|+... ++.+.+.+.++++.+++.+.+....++++|+.+.+.++
T Consensus 83 ~~~~~-~g~~l~~~~~g~~w~~~R~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~ 160 (507)
T 3pm0_A 83 FRVVS-GGRSMAFGHYSEHWKVQRRAA-HSMMRNFFTRQPRSRQVLEGHVLSEARELVALLVRGSADGAFLDPRPLTVVA 160 (507)
T ss_dssp HHHGG-GGTCSSSSCSSHHHHHHHHHH-HHHHHHSTTSSTTHHHHHHHHHHHHHHHHHHHHHHTTGGGCCBCCHHHHHHH
T ss_pred HHhhc-CCCceEECCCChHHHHHHHHH-HHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhcccCCCcChHHHHHHH
Confidence 43333 245666777899999999997 66554322 23488999999999999998655557789999999999
Q ss_pred HHHHHHHHHhCCcccccccccchHHHHHHHHHHHHhcccccccccccccccccccc-chHHHHHHHHHHHHHHHHHHHHH
Q 021726 180 TSSITCRIGFGKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNI-TGMIRRLERNFKEFDAFHQELIE 258 (308)
Q Consensus 180 t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~ 258 (308)
++|+++.++||.+++.++ .....+......+........+.+++|++++++.. .+..++..+..+.+.+++.+.++
T Consensus 161 ~~dvi~~~~fG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~i~ 237 (507)
T 3pm0_A 161 VANVMSAVCFGCRYSHDD---PEFRELLSHNEEFGRTVGAGSLVDVMPWLQYFPNPVRTVFREFEQLNRNFSNFILDKFL 237 (507)
T ss_dssp HHHHHHHHHTSCCCCTTC---HHHHHHTSCHHHHHHHHSTTCCTTTCGGGGGSCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccccCCCCC---HHHHHHHHHHHHHHHhcccchHHHHhHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987321 12233333344444444334456778988766311 11346677778888888999998
Q ss_pred HhhCccCCCCCCCcHHHHHHHhhhh--cC----CCCCCCHHHHHHHHHHHhhccC
Q 021726 259 EHLDPARIKTDQEDIVDVLLQIWKQ--RG----SKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 259 ~~~~~~~~~~~~~dll~~ll~~~~~--~~----~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
+++++...+..++|+++.|++..++ ++ ....+|++++.+++.++++||+
T Consensus 238 ~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~ 292 (507)
T 3pm0_A 238 RHCESLRPGAAPRDMMDAFILSAEKKAAGDSHGGGARLDLENVPATITDIFGASQ 292 (507)
T ss_dssp HHHHHCCTTCCCCSHHHHHHHHHHHHHSCC----CCCCCGGGHHHHHHHHHHHHH
T ss_pred HHHhccccccCCccHHHHHHHHhhhhccccccCCCCCCCHHHHHHHHHHHHhccc
Confidence 8876543324578999999966432 11 0125999999999999999984
No 3
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=100.00 E-value=6.2e-35 Score=272.26 Aligned_cols=263 Identities=21% Similarity=0.313 Sum_probs=198.9
Q ss_pred CCCCCCCCCCCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcccc
Q 021726 27 IKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQ 106 (308)
Q Consensus 27 ~~~~~lpPGP~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~ 106 (308)
++..++||||++ ++++..++++..+.+|+++||||+++++|+.++|+|+||+++++|+.+++..|++||.....
T Consensus 25 ~~~~~lPPGP~~------l~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~f~~r~~~~~~ 98 (496)
T 3qz1_A 25 LRNLHLPPLVPG------FLHLLQPNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIPSY 98 (496)
T ss_dssp ----CCCCBCSC------SCTTSSSCHHHHHHHGGGTSCSEEEECSSSSCEEEECSTTHHHHTTTTSCSTTCBCCCCTTT
T ss_pred ccCCCCCcCCcc------ccccCCCcchHHHHHHHHHhCCEEEEEeCCcCEEEECCHHHHHHHHHhCcHhhCCCCCcchH
Confidence 445689999986 45554678999999999999999999999999999999999999999998899999876544
Q ss_pred cccccCCcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHH
Q 021726 107 QKVSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCR 186 (308)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~ 186 (308)
.....+..+++++++|+.|+++||++ ++.|+.+.++++.+.+.++++.+++.|.+ ..|+++|+.+.+.++++|+|++
T Consensus 99 ~~~~~~~~~l~~~~~g~~w~~~Rr~~-~~~f~~~~~~~~~~~i~~~~~~l~~~l~~--~~~~~vd~~~~~~~~~~dvi~~ 175 (496)
T 3qz1_A 99 KLVSQRCQDISLGDYSLLWKAHKKLT-RSALLLGTRSSMEPWVDQLTQEFCERMRV--QAGAPVTIQKEFSLLTCSIICY 175 (496)
T ss_dssp TTSCTTCCCSSSSCCSHHHHHHHHHH-HHHHHC--CCCHHHHHHHHHHHHHHHHHT--TCSCCCHHHHHHTHHHHHHTTT
T ss_pred HHhcCCCCceEECCCCHHHHHHHHHH-HHHHhhccHhhHHHHHHHHHHHHHHHHHh--cCCCccCHHHHHHHHHHHHHHH
Confidence 33332223667765699999999997 78888767788999999999999999984 3577899999999999999999
Q ss_pred HHhCCcccccccccchHHHHHHHHHHHHhcccc--ccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCcc
Q 021726 187 IGFGKSYEVEDQGISERSRFGALLTETQALVVG--FFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPA 264 (308)
Q Consensus 187 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 264 (308)
++||. .+ + .....+.+.+...+..... ..+.+++|++++++ .+..++..+..+.+.+++.+.+++++++.
T Consensus 176 ~~fG~-~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~lp--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 247 (496)
T 3qz1_A 176 LTFGN-KE--D---TLVHAFHDCVQDLMKTWDHWSIQILDMVPFLRFFP--NPGLWRLKQAIENRDHMVEKQLRRHKESM 247 (496)
T ss_dssp TSTTC-CC--H---HHHHHHHHHHHTTTTTTSSHHHHHHHHCGGGCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HhcCC-CC--C---hHHHHHHHHHHHHHHHhccchhHHHHhHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99998 22 1 1223344444444333322 23456788887663 23456777888889999999999988654
Q ss_pred CCCCCCCcHHHHHHHhhhhc--CC-CCCCCHHHHHHHHHHHhhccC
Q 021726 265 RIKTDQEDIVDVLLQIWKQR--GS-KVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 265 ~~~~~~~dll~~ll~~~~~~--~~-~~~~t~~~i~~~~~~l~~a~~ 307 (308)
. .+..+|+++.|+++..++ ++ ...+|++++.+++.++++||+
T Consensus 248 ~-~~~~~d~l~~ll~~~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~ 292 (496)
T 3qz1_A 248 V-AGQWRDMTDYMLQGVGRQRVEEGPGQLLEGHVHMSVVDLFIGGT 292 (496)
T ss_dssp C-SSCCSSSHHHHTTSSTTCCC-----CCCTHHHHHHHHHHHHHHH
T ss_pred c-CCCccchHHHHHHHHHhccccCCcccccHHHHHHHHHHHHHhhh
Confidence 2 234689999999875432 11 126999999999999999985
No 4
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=100.00 E-value=1.9e-33 Score=260.82 Aligned_cols=268 Identities=24% Similarity=0.367 Sum_probs=199.8
Q ss_pred CCCCCCCCCCCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcccc
Q 021726 27 IKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQ 106 (308)
Q Consensus 27 ~~~~~lpPGP~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~ 106 (308)
+++.++||||+++|++||++++..++++..+.+|+++||+||++++|+.++|+|+||+++++||.+++..|++|+.....
T Consensus 6 ~~~~~lpPgP~~~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~~~~v~~il~~~~~~f~~r~~~~~~ 85 (476)
T 3e6i_A 6 SSKGKLPPGPFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLPAF 85 (476)
T ss_dssp ----CCCCCCCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTSTTTTCEECCCGGG
T ss_pred cCCCCCCcCCCCcccccChhhhccccHhHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcchHhhCCCCCCchh
Confidence 44567999999999999999985568899999999999999999999999999999999999999998899988765544
Q ss_pred cccccCCcceEeccCChhHHHHHHHHHHhhCChHHH--hhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Q 021726 107 QKVSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRV--QSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSIT 184 (308)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l--~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi 184 (308)
..+.. + ++++ .+|+.|+++||+. .+.|+...+ ..+.+.+.++++.+++.|.+ ..++++|+.+.+.++++|+|
T Consensus 86 ~~~~~-~-~l~~-~~g~~w~~~Rr~~-~~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~--~~~~~~d~~~~~~~~~~dvi 159 (476)
T 3e6i_A 86 HAHRD-R-GIIF-NNGPTWKDIRRFS-LTTLRNYGMGKQGNESRIQREAHFLLEALRK--TQGQPFDPTFLIGCAPCNVI 159 (476)
T ss_dssp GGGTT-S-SSTT-CCSTTHHHHHHHH-HHHHHHTC-CCSHHHHHHHHHHHHHHHHHHT--TTTSCBCTHHHHTHHHHHHH
T ss_pred heecC-C-CEEe-cCCcHHHHHHHHH-HHHHHhcCCCchHHHHHHHHHHHHHHHHHHH--hCCCCcChHHHHHHHHHHHH
Confidence 44332 2 5554 4799999999985 665554322 34678999999999999974 34678999999999999999
Q ss_pred HHHHhCCcccccccccchHHHHHHHHHHHHhccccc--ccccccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 021726 185 CRIGFGKSYEVEDQGISERSRFGALLTETQALVVGF--FVTDYFP-SIGWVDNITGMIRRLERNFKEFDAFHQELIEEHL 261 (308)
Q Consensus 185 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 261 (308)
+.++||.+++..+ .....+...+...+...... .+.+.+| ++.++ ++..++..+..+.+.+++.+.+++++
T Consensus 160 ~~~~fG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l---p~~~~~~~~~~~~~~~~~~~~i~~~~ 233 (476)
T 3e6i_A 160 ADILFRKHFDYND---EKFLRLMYLFNENFHLLSTPWLQLYNNFPSFLHYL---PGSHRKVIKNVAEVKEYVSERVKEHH 233 (476)
T ss_dssp HHHHHSCCCCTTC---HHHHHHHHHHHHHHHHTTSHHHHHHHHSHHHHTTS---CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCC---HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHc---CcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999987322 12233444444444332221 2345566 44443 33445677788888899999999987
Q ss_pred CccCCCCCCCcHHHHHHHhhhhcC--CCCCCCHHHHHHHHHHHhhccC
Q 021726 262 DPARIKTDQEDIVDVLLQIWKQRG--SKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 262 ~~~~~~~~~~dll~~ll~~~~~~~--~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
+..+. +.++|+++.|+++..+++ .+..+|++++.+++.++++||+
T Consensus 234 ~~~~~-~~~~d~~~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~ 280 (476)
T 3e6i_A 234 QSLDP-NCPRDLTDCLLVEMEKEKHSAERLYTMDGITVTVADLFFAGT 280 (476)
T ss_dssp HTCCT-TSCCSHHHHHHHHHHSSSSCSSCSCCHHHHHHHHHHHHHHHH
T ss_pred hcCCC-CCCccHHHHHHHHHHhcccCCCCCcCHHHHHHHHHHHHhcch
Confidence 65422 346799999997654321 2346999999999999999985
No 5
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=100.00 E-value=6.4e-34 Score=265.71 Aligned_cols=270 Identities=20% Similarity=0.319 Sum_probs=202.9
Q ss_pred CCCCC--CCCCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcccc
Q 021726 29 SIALP--PGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQ 106 (308)
Q Consensus 29 ~~~lp--PGP~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~ 106 (308)
..++| |||+++|++||++++ .++++..+.+|+++||||+++++|+.++|+++||+++++|+.+++..|++||.....
T Consensus 12 ~~~lp~~PgP~~~p~~G~~~~~-~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~i~~il~~~~~~f~~r~~~~~~ 90 (495)
T 2hi4_A 12 PKGLKSPPEPWGWPLLGHVLTL-GKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDLYTS 90 (495)
T ss_dssp CTTCBCCCCCCCBTTTBTHHHH-TTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTGGGSCBCCCCHHH
T ss_pred CCCCCCCCCCCCCcceeeHHhc-CccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhcchhhCCCCCcHHH
Confidence 34555 999999999999887 668899999999999999999999999999999999999999888889988865433
Q ss_pred cccccCCcceEec-cCChhHHHHHHHHHHhhC---ChHHH---h---hhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH
Q 021726 107 QKVSYNGLDVAFA-PYNAYWREIRKICVVHLF---NSNRV---Q---SFRPIREGEVSILIEKVSRSAVASKPVNLSELM 176 (308)
Q Consensus 107 ~~~~~~~~~~~~~-~~g~~Wk~~Rr~~~~~~f---~~~~l---~---~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~ 176 (308)
..+. .+.+++++ ++|+.|+++||++ ++.| +..+. + .+.+.+.++++.+++.|.+.+.+|+++|+.+.+
T Consensus 91 ~~~~-~~~~l~~~~~~g~~w~~~Rr~~-~~~f~~~s~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~d~~~~~ 168 (495)
T 2hi4_A 91 TLIT-DGQSLTFSTDSGPVWAARRRLA-QNALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQELMAGPGHFDPYNQV 168 (495)
T ss_dssp HTST-TSCCTTTSSCCSHHHHHHHHHH-HHHHHHTTTSBCSSCSSCBHHHHHHHHHHHHHHHHHHHHHHTTSCBCHHHHH
T ss_pred HHhc-CCCCEEEcCCCChHHHHHHHHH-HHHHHHhccCcccccchhhhHHHHHHHHHHHHHHHHHHhccCCCccchHHHH
Confidence 2222 24555555 4799999999997 6664 33322 2 689999999999999997644457789999999
Q ss_pred HHHHHHHHHHHHhCCcccccccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHH
Q 021726 177 KSLTSSITCRIGFGKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQEL 256 (308)
Q Consensus 177 ~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (308)
.++++|+|++++||.+++.++ .....+.+..+.+..........+++|++++++ .+..++..++.+.+.+++.++
T Consensus 169 ~~~~~dvi~~~~fG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lp--~~~~~~~~~~~~~~~~~~~~~ 243 (495)
T 2hi4_A 169 VVSVANVIGAMCFGQHFPESS---DEMLSLVKNTHEFVETASSGNPLDFFPILRYLP--NPALQRFKAFNQRFLWFLQKT 243 (495)
T ss_dssp HHHHHHHHHHHHHGGGSCTTC---HHHHHHHTTTHHHHTTSSTTCGGGTCGGGGGSC--CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCC---HHHHHHHHHHHHHHHhcccchHHHHhHHHHhcC--chHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886311 122333333444544333323556788887552 234456677888888999999
Q ss_pred HHHhhCccCCCCCCCcHHHHHHHhhhhc--CCCCCCCHHHHHHHHHHHhhccC
Q 021726 257 IEEHLDPARIKTDQEDIVDVLLQIWKQR--GSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 257 i~~~~~~~~~~~~~~dll~~ll~~~~~~--~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
|+++++..+ ....+|+++.|+++..+. +++..+|++++.+++.++++||+
T Consensus 244 i~~r~~~~~-~~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~ 295 (495)
T 2hi4_A 244 VQEHYQDFD-KNSVRDITGALFKHSKKGPRASGNLIPQEKIVNLVNDIFGAGF 295 (495)
T ss_dssp HHHHHHTCC-TTCCCSHHHHHHHHHHHCCEETTEECCTHHHHTHHHHHHHHHH
T ss_pred HHHHHHhhc-ccccccHHHHHHHHhhhccCccccCCCHHHHHHHHHHHHHhhh
Confidence 999876532 234579999999653221 11235999999999999999985
No 6
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=100.00 E-value=2.2e-33 Score=260.47 Aligned_cols=275 Identities=23% Similarity=0.346 Sum_probs=192.1
Q ss_pred hccCCCCCCCCCCCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCc
Q 021726 24 YKTIKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPAL 103 (308)
Q Consensus 24 ~~~~~~~~lpPGP~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~ 103 (308)
++++++.++||||+++|++||++++..++++..+.+|+++|||||++++|+.++|||+||+++++||++++..|++||..
T Consensus 3 ~~~ss~~kLPPGP~~lP~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~i~~vl~~~~~~f~~r~~~ 82 (479)
T 3tbg_A 3 KKTSSKGKLPPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPV 82 (479)
T ss_dssp ------CCCCCCSCCBTTTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETTEEEEEEEHHHHHHHHHTTTGGGSCBCCCC
T ss_pred CCCCCCCCCCCCCCCcCcccchHhhcCCCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCChhhcCCCch
Confidence 34556668999999999999999885678899999999999999999999999999999999999999999999999876
Q ss_pred cccccccc--CCcceEeccCChhHHHHHHHHHHhhCChHHHhh--hHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHH
Q 021726 104 LSQQKVSY--NGLDVAFAPYNAYWREIRKICVVHLFNSNRVQS--FRPIREGEVSILIEKVSRSAVASKPVNLSELMKSL 179 (308)
Q Consensus 104 ~~~~~~~~--~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~--~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~ 179 (308)
.....+.. .+.+++++.+|+.|+++|+++ .+.|+...+.. +.+.+......+.+.+.. ..++++|+.+.+.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~ 159 (479)
T 3tbg_A 83 PITQILGFGPRSQGVFLARYGPAWREQRRFS-VSTLRNLGLGKKSLEQWVTEEAACLCAAFAN--HSGRPFRPNGLLDKA 159 (479)
T ss_dssp GGGGGGTCBTTBCCSTTCCSSHHHHHHHHHH-HHHHHHTTSTTCHHHHHHHHHHHHHHHHHHT--TTTCCBCTHHHHHHH
T ss_pred HHHHHhccCCCCCceeeCCCCHHHHHHHHHH-HHHhcchhhhHHHHHHHHHHHHHHHHHHHHh--ccCCcccHHHHHHHH
Confidence 65544332 234566777899999999996 67776655443 455666666777766653 356789999999999
Q ss_pred HHHHHHHHHhCCcccccccccchHHHHHHHHHHHHhccccc--cccccccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 021726 180 TSSITCRIGFGKSYEVEDQGISERSRFGALLTETQALVVGF--FVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELI 257 (308)
Q Consensus 180 t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 257 (308)
++++++.++||.+++..+. ....+.............. ......|++.++ ....++.....+...+.+.+.+
T Consensus 160 ~~~~~~~~~fg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 233 (479)
T 3tbg_A 160 VSNVIASLTCGRRFEYDDP---RFLRLLDLAQEGLKEESGFLREVLNAVPVLLHI---PALAGKVLRFQKAFLTQLDELL 233 (479)
T ss_dssp HHHHHHHHHHSCCCCTTCH---HHHHHHHHHHHHHHTTSSHHHHHHHHSGGGGGS---HHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcccccch---hhhhhhhhhhhhhhhhhhhhhhhhcccchhccc---hhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999874221 2223333333333222211 122233443332 2233444455556666666666
Q ss_pred HHhhCccCCCCCCCcHHHHHHHhhhh--cCCCCCCCHHHHHHHHHHHhhccC
Q 021726 258 EEHLDPARIKTDQEDIVDVLLQIWKQ--RGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 258 ~~~~~~~~~~~~~~dll~~ll~~~~~--~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
+++++..+.....+|+++.++..... .+....+|++++.+++.++++||+
T Consensus 234 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~ 285 (479)
T 3tbg_A 234 TEHRMTWDPAQPPRDLTEAFLAEMEKAKGNPESSFNDENLRIVVADLFSAGM 285 (479)
T ss_dssp HHHHHHCCTTSCCCSHHHHHHHHHHHTTTCTTCSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccccchhhhhhhhhhhhcccCCccchhhHHHHHHHHHHHHhhh
Confidence 66655432233567888888765332 222357999999999999999985
No 7
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=100.00 E-value=1.4e-33 Score=262.62 Aligned_cols=272 Identities=24% Similarity=0.367 Sum_probs=202.1
Q ss_pred cCCCCCCCCCCCCCcccccccCCCCCC--chHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCc
Q 021726 26 TIKSIALPPGPRGLPFIGNLHQFDYSN--PQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPAL 103 (308)
Q Consensus 26 ~~~~~~lpPGP~~~P~lGn~~~~~~~~--~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~ 103 (308)
.++..++||||+++|++||++++.... ++..+.+|+++||||+++++|+.++|+|+||+++++|+.+++..|++||..
T Consensus 7 ~~~~~~lpPgP~~~p~~G~~~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~vl~~~~~~f~~~~~~ 86 (481)
T 3czh_A 7 QRRPMGFPPGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCL 86 (481)
T ss_dssp -----CCCCCCCCBTTTBHHHHHHHCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCC
T ss_pred cCCCCCCCCCCCCCcccccHhhcCcccCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhhchHhhCCCCCc
Confidence 334567899999999999998763223 889999999999999999999999999999999999999888889988754
Q ss_pred ccccccccCCcceEeccCChhHHHHHHHHHHhhCChHHH--hhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH
Q 021726 104 LSQQKVSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRV--QSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTS 181 (308)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l--~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~ 181 (308)
.....+.. +.++++..+|+.|+++||++ ++.|+...+ +.+.+.+.++++.+++.|.+ ..|+++|+.+.+.++++
T Consensus 87 ~~~~~~~~-~~~~~~~~~g~~w~~~R~~~-~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~--~~~~~~d~~~~~~~~~~ 162 (481)
T 3czh_A 87 PLFMKMTK-MGGLLNSRYGRGWVDHRRLA-VNSFRYFGYGQKSFESKILEETKFFNDAIET--YKGRPFDFKQLITNAVS 162 (481)
T ss_dssp HHHHHHHT-TCSSTTCCSSHHHHHHHHHH-HHHHHHTTTTSTTHHHHHHHHHHHHHHHHHT--TTTCCBCCHHHHHHHHH
T ss_pred HHHHhhcC-CCCeEeCCCChHHHHHHHHH-HHHHHHhcCChHHHHHHHHHHHHHHHHHHHH--cCCCCcCHHHHHHHHHH
Confidence 33232322 33545556899999999996 788875433 57899999999999999974 24668999999999999
Q ss_pred HHHHHHHhCCcccccccccchHHHHHHHHHHHHhcccccc--ccccccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 021726 182 SITCRIGFGKSYEVEDQGISERSRFGALLTETQALVVGFF--VTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEE 259 (308)
Q Consensus 182 ~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 259 (308)
|+|++++||.+++.++ .....+.+.+...+....... +.+++|++++++ .+..++..+..+.+.+++.++|++
T Consensus 163 ~vi~~~~fG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lp--~~~~~~~~~~~~~~~~~~~~~i~~ 237 (481)
T 3czh_A 163 NITNLIIFGERFTYED---TDFQHMIELFSENVELAASASVFLYNAFPWIGILP--FGKHQQLFRNAAVVYDFLSRLIEK 237 (481)
T ss_dssp HHHHHHHHSSCCCTTC---HHHHHHHHHHHHHHHHTTSHHHHHHHHCGGGGGCS--SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCC---HHHHHHHHHHHHHHhhhccchhHHhhhhHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999886211 122334444444444322211 456688876542 223456677788888999999999
Q ss_pred hhCccCCCCCCCcHHHHHHHhhhhc--CCCCCCCHHHHHHHHHHHhhccC
Q 021726 260 HLDPARIKTDQEDIVDVLLQIWKQR--GSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 260 ~~~~~~~~~~~~dll~~ll~~~~~~--~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
+++... ...++|+++.|+++.+++ +++..+|++++.+++.++++||+
T Consensus 238 r~~~~~-~~~~~d~l~~ll~~~~~~~~~~~~~l~~~ei~~~~~~l~~AG~ 286 (481)
T 3czh_A 238 ASVNRK-PQLPQHFVDAYLDEMDQGKNDPSSTFSKENLIFSVGELIIAGT 286 (481)
T ss_dssp HHTTCC-TTCCSSHHHHHHHHHHHTTTCTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhcC-CCchHHHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHhcc
Confidence 887542 234579999999765431 11236999999999999999985
No 8
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=100.00 E-value=3.8e-33 Score=259.22 Aligned_cols=272 Identities=21% Similarity=0.389 Sum_probs=189.2
Q ss_pred hccCCCCCCCCCCCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCc
Q 021726 24 YKTIKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPAL 103 (308)
Q Consensus 24 ~~~~~~~~lpPGP~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~ 103 (308)
+++++..++||||+++|++||++++..++++..+.+|+++||||+++++|+.++|+|+||+++++|+.+++..|++||..
T Consensus 4 ~~~~~~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~il~~~~~~f~~~~~~ 83 (477)
T 1r9o_A 4 KTSSGRGKLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIF 83 (477)
T ss_dssp -----CCBCCCCSSSCC-----CCBCHHHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCC
T ss_pred ccccCCCCCCCCCCCCceeccHhhcCCCChHHHHHHHHHHhCCEEEEEECCCcEEEECCHHHHHHHHhcccHhhCCCCcc
Confidence 34445557899999999999998873356788999999999999999999999999999999999998888889887753
Q ss_pred ccccccccCCcceEeccCChhHHHHHHHHHHhhCChH--HHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH
Q 021726 104 LSQQKVSYNGLDVAFAPYNAYWREIRKICVVHLFNSN--RVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTS 181 (308)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~--~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~ 181 (308)
....... .+.+++++ +|+.|+++||++ .+.|+.. .++.+.+.+.++++.+++.|.+ ..++++|+.+.+.++++
T Consensus 84 ~~~~~~~-~~~~l~~~-~g~~w~~~Rr~~-~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~--~~~~~vd~~~~~~~~~~ 158 (477)
T 1r9o_A 84 PLAERAN-RGFGIVFS-NGKKWKEIRRFS-LMTLRNFGMGKRSIEDRVQEEARCLVEELRK--TKASPCDPTFILGCAPC 158 (477)
T ss_dssp SCCCTTT-CTTSSTTC-CHHHHHHHHHHH-HHHHTTSSSCSSCHHHHHHHHHHHHHHHHHT--TTTSCBCTHHHHHHHHH
T ss_pred hhhhhcc-CCCceEec-CChHHHHHHHHH-HHHHHHhCCChHHHHHHHHHHHHHHHHHHHh--cCCCccChHHHHHHHHH
Confidence 3222222 24455544 899999999986 7778766 4567899999999999999974 23578999999999999
Q ss_pred HHHHHHHhCCcccccccccchHHHHHHHHHHHHhcccc--cccccccccc-ccccccchHHHHHHHHHHHHHHHHHHHHH
Q 021726 182 SITCRIGFGKSYEVEDQGISERSRFGALLTETQALVVG--FFVTDYFPSI-GWVDNITGMIRRLERNFKEFDAFHQELIE 258 (308)
Q Consensus 182 ~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~P~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 258 (308)
|+|++++||.+++.++ .....+.+.+...+..... ..+.+++|++ +++ ++..++..++.+.+.+++.++|+
T Consensus 159 ~vi~~~~fG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l---p~~~~~~~~~~~~~~~~~~~~i~ 232 (477)
T 1r9o_A 159 NVICSIIFHKRFDYKD---QQFLNLMEKLNENIKILSSPWIQICNNFSPIIDYF---PGTHNKLLKNVAFMKSYILEKVK 232 (477)
T ss_dssp HHHHHHHHSCCCCTTC---HHHHHHHHHHHHHHHHHTCCBC-------CCCSCC---TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCcCCCCC---HHHHHHHHHHHHHHHhhccchhHHHhhccHHHHhc---chHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999886321 1222333333333322111 1234567763 333 22235566677788889999999
Q ss_pred HhhCccCCCCCCCcHHHHHHHhhhh--cCCCCCCCHHHHHHHHHHHhhccC
Q 021726 259 EHLDPARIKTDQEDIVDVLLQIWKQ--RGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 259 ~~~~~~~~~~~~~dll~~ll~~~~~--~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
++++... ...++|+++.|++..++ ++++..+|++++.+++.++++||+
T Consensus 233 ~r~~~~~-~~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~ 282 (477)
T 1r9o_A 233 EHQESMD-MNNPQDFIDCFLMKMEKEKHNQPSEFTIESLENTAVDLFGAGT 282 (477)
T ss_dssp HHHHTCC-TTCCCSHHHHHHHHHHHHTTSCSCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHhccC-CCCchHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHhhccc
Confidence 9876432 23457999999965332 111246999999999999999985
No 9
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=100.00 E-value=1.3e-33 Score=263.85 Aligned_cols=259 Identities=14% Similarity=0.222 Sum_probs=189.7
Q ss_pred CCCCCCCCCCCcccccccCCCC---CCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCccc
Q 021726 29 SIALPPGPRGLPFIGNLHQFDY---SNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLS 105 (308)
Q Consensus 29 ~~~lpPGP~~~P~lGn~~~~~~---~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~ 105 (308)
+.+.||||+++|++||++++.. ...+..+.+|+++||||+++++|+.++|||+||++++++|.+ +.|++|+....
T Consensus 43 ~~~~pPGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~il~~--~~~~~r~~~~~ 120 (503)
T 3s79_A 43 GTSSIPGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKH--NHYSSRFGSKL 120 (503)
T ss_dssp --CCCCSCCCCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSSSEEEEECCHHHHHHHHHS--GGGCCCCCCHH
T ss_pred ccCCCCCCCCCceeeehhccccccccchhHHHHHHHHHhCCeEEEEeCCccEEEECCHHHHHHHHhc--CCCCCcchhhh
Confidence 3468999999999999988621 234568899999999999999999999999999999999954 46888875432
Q ss_pred c-cccccCCcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Q 021726 106 Q-QKVSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSIT 184 (308)
Q Consensus 106 ~-~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi 184 (308)
. ......+.+++++.+|+.|+++||++ ++.|+...++++.+.+.++++++++.|.+...+++++|+.+.+.+++++++
T Consensus 121 ~~~~~~~~~~~~~~~~~g~~w~~~Rr~~-~~~f~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~vdl~~~~~~~~~~vi 199 (503)
T 3s79_A 121 GLQCIGMHEKGIIFNNNPELWKTTRPFF-MKALSGPGLVRMVTVCAESLKTHLDRLEEVTNESGYVDVLTLLRRVMLDTS 199 (503)
T ss_dssp HHHHHTCTTSSSTTCCCHHHHHHHHHHH-HHHTSTHHHHHHHHHHHHHHHHHHTTGGGTBCTTSCBCHHHHHHHHHHHHH
T ss_pred hhhhhccCCCceeeCCCccHHHHHHHhh-hHhhChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHHHHHH
Confidence 2 22222355667777899999999997 899999999999999999999999998765455678999999999999999
Q ss_pred HHHHhCCcccccccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCcc
Q 021726 185 CRIGFGKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPA 264 (308)
Q Consensus 185 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 264 (308)
++++||.+++ +.+ ....+....+....... ..++++.+.+ + .++..+..+.+.+++.++++++++..
T Consensus 200 ~~~~fG~~~~--~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~i~~~~~~~ 266 (503)
T 3s79_A 200 NTLFLRIPLD--ESA--IVVKIQGYFDAWQALLI---KPDIFFKISW---L---YKKYEKSVKDLKDAIEVLIAEKRRRI 266 (503)
T ss_dssp HHHHTCCCCC--HHH--HHHHHHHHHHHHHHHTT---CCHHHHHSGG---G---THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccC--chh--HHHHHHHHHHHHHHHhc---CcHHHhhcch---h---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999886 110 11122222222221111 0111111111 1 24556677788888888888887643
Q ss_pred CCC---CCCCcHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 265 RIK---TDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 265 ~~~---~~~~dll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
..+ .+..|+++.|+++.+++ .+|++++.+.+.++++||+
T Consensus 267 ~~~~~~~~~~d~l~~ll~~~~~~----~l~~~~i~~~~~~~~~AG~ 308 (503)
T 3s79_A 267 STEEKLEECMDFATELILAEKRG----DLTRENVNQCILEMLIAAP 308 (503)
T ss_dssp HTCTTTTTTCCHHHHHHHHHHTT----SSCHHHHHHHHHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHhcccC----CCCHHHHHHHHHHHHHHcc
Confidence 221 13459999999876443 4999999999999999985
No 10
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=100.00 E-value=5.4e-33 Score=258.15 Aligned_cols=269 Identities=25% Similarity=0.433 Sum_probs=197.4
Q ss_pred CCCCCCCCCCCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcccc
Q 021726 27 IKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQ 106 (308)
Q Consensus 27 ~~~~~lpPGP~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~ 106 (308)
++..++||||+++|++||++++..++++..+.+|+++||||+++++|+.++|+|+||+++++|+.+++..|++|+.....
T Consensus 6 ~~~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~ 85 (476)
T 1po5_A 6 SSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVV 85 (476)
T ss_dssp ---CCCCCCSCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGGG
T ss_pred cCCCCCCcCCCCCCccccHHhccCCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCCcHHH
Confidence 34457899999999999999874567899999999999999999999999999999999999998888889887754332
Q ss_pred cccccCCcceEeccCChhHHHHHHHHHHhhCChH--HHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Q 021726 107 QKVSYNGLDVAFAPYNAYWREIRKICVVHLFNSN--RVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSIT 184 (308)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~--~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi 184 (308)
.... .+.+++++ +|+.|+++||++ .+.|+.. .++.+.+.+.++++.+++.|.+ ..|+++|+.+.+.++++++|
T Consensus 86 ~~~~-~~~~l~~~-~g~~w~~~Rr~~-~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~--~~~~~~d~~~~~~~~~~~vi 160 (476)
T 1po5_A 86 DPIF-QGYGVIFA-NGERWRALRRFS-LATMRDFGMGKRSVEERIQEEARCLVEELRK--SKGALLDNTLLFHSITSNII 160 (476)
T ss_dssp CSCC-SSCCCCCS-SHHHHHHHHHHH-HHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH--TTTCCBCCHHHHHHHHHHHH
T ss_pred Hhhc-CCCceEec-CCcHHHHHHHHH-HHHHHHhCCChhHHHHHHHHHHHHHHHHHHh--cCCCccCHHHHHHHHHHHHH
Confidence 2222 24455555 899999999986 7777765 4567899999999999999974 24578999999999999999
Q ss_pred HHHHhCCcccccccccchHHHHHHHHHHHHhccccc--cccccccc-cccccccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 021726 185 CRIGFGKSYEVEDQGISERSRFGALLTETQALVVGF--FVTDYFPS-IGWVDNITGMIRRLERNFKEFDAFHQELIEEHL 261 (308)
Q Consensus 185 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 261 (308)
++++||.+++.++ .....+.+.+...+...... .+.+++|+ ++++ ++..++..+..+.+.+++.++|++++
T Consensus 161 ~~~~fG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~l---p~~~~~~~~~~~~~~~~~~~~i~~r~ 234 (476)
T 1po5_A 161 CSIVFGKRFDYKD---PVFLRLLDLFFQSFSLISSFSSQVFELFSGFLKHF---PGTHRQIYRNLQEINTFIGQSVEKHR 234 (476)
T ss_dssp HHHHHSSCCCTTC---HHHHHHHHHHHHHTTTCCTTHHHHHHHTHHHHHTS---SCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCC---HHHHHHHHHHHHHHhhhcchhhHHHHhhhHHHHhc---CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999886211 11222333333333211111 22345676 3333 22235566677888899999999988
Q ss_pred CccCCCCCCCcHHHHHHHhhhh--cCCCCCCCHHHHHHHHHHHhhccC
Q 021726 262 DPARIKTDQEDIVDVLLQIWKQ--RGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 262 ~~~~~~~~~~dll~~ll~~~~~--~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
+..+ +.+++|+++.|+++.++ ++++..+|++++.+++.++++||+
T Consensus 235 ~~~~-~~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~ 281 (476)
T 1po5_A 235 ATLD-PSNPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTVLSLFFAGT 281 (476)
T ss_dssp TTCC-TTSCCSHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HhcC-CCCcccHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhcc
Confidence 7542 22457999999965432 111235899999999999999985
No 11
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=100.00 E-value=7.6e-33 Score=257.18 Aligned_cols=268 Identities=18% Similarity=0.313 Sum_probs=201.8
Q ss_pred CCCCCCCCCCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCccccc
Q 021726 28 KSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQ 107 (308)
Q Consensus 28 ~~~~lpPGP~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~ 107 (308)
+..++||||+++|++||++++...+++..+.+|+++||||+++++|+.++|+|+||+++++|+.+++..|++||......
T Consensus 7 ~~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~ 86 (476)
T 2fdv_A 7 SKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATFD 86 (476)
T ss_dssp -CCBCCCCCCCBTTTBTGGGCCTTBHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCCHHHH
T ss_pred ccCCCCCCCCCCcccccHhhcCCcchHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcChHhhCCCCCcHHHh
Confidence 34468999999999999998744678999999999999999999999999999999999999988878898877543222
Q ss_pred ccccCCcceEeccCChhHHHHHHHHHHhhCChHHH--hhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHH
Q 021726 108 KVSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRV--QSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITC 185 (308)
Q Consensus 108 ~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l--~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~ 185 (308)
.... +.+++++ +|+.|+++||++ ++.|+...+ +.+.+.+.++++.+++.|.+ ..++++|+.+.+.++++++|+
T Consensus 87 ~~~~-~~~l~~~-~g~~~~~~Rr~~-~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~--~~~~~vd~~~~~~~~~~~vi~ 161 (476)
T 2fdv_A 87 WVFK-GYGVVFS-NGERAKQLRRFS-IATLRDFGVGKRGIEERIQEEAGFLIDALRG--TGGANIDPTFFLSRTVSNVIS 161 (476)
T ss_dssp HHHT-TCSSSSC-CHHHHHHHHHHH-HHHHHHTTTTSHHHHHHHHHHHHHHHHHHHH--TTTCCBCCHHHHHHHHHHHHH
T ss_pred hhcC-CCCeEec-CchHHHHHHHHH-HHHHHHhCCChhhHHHHHHHHHHHHHHHHHh--cCCCccChHHHHHHHHHHHHH
Confidence 2222 4555555 799999999996 888877655 67899999999999999974 245789999999999999999
Q ss_pred HHHhCCcccccccccchHHHHHHHHHHHHhccccc--cccccccc-cccccccchHHHHHHHHHHHHHHHHHHHHHHhhC
Q 021726 186 RIGFGKSYEVEDQGISERSRFGALLTETQALVVGF--FVTDYFPS-IGWVDNITGMIRRLERNFKEFDAFHQELIEEHLD 262 (308)
Q Consensus 186 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 262 (308)
+++||.+++.++ .....+.+.+...+...... .+.+++|+ ++++ ++..++..++.+.+.+++.++++++++
T Consensus 162 ~~~fG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l---~~~~~~~~~~~~~~~~~~~~~i~~r~~ 235 (476)
T 2fdv_A 162 SIVFGDRFDYKD---KEFLSLLRMMLGIFQFTSTSTGQLYEMFSSVMKHL---PGPQQQAFQLLQGLEDFIAKKVEHNQR 235 (476)
T ss_dssp HHHHSSCCCTTC---HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCcCCCCC---HHHHHHHHHHHHHHHhhcccccchhhhhhhHHHhc---CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887321 12233444444444322211 12345776 4433 233456667788888999999999887
Q ss_pred ccCCCCCCCcHHHHHHHhhhhc--CCCCCCCHHHHHHHHHHHhhccC
Q 021726 263 PARIKTDQEDIVDVLLQIWKQR--GSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 263 ~~~~~~~~~dll~~ll~~~~~~--~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
..+ .+.++|+++.|+++.+++ +++..+|++++.+++.++++||+
T Consensus 236 ~~~-~~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~ 281 (476)
T 2fdv_A 236 TLD-PNSPRDFIDSFLIRMQEEEKNPNTEFYLKNLVMTTLNLFIGGT 281 (476)
T ss_dssp TCC-TTSCCSHHHHHHHHHHHTTTCTTCSCSHHHHHHHHHHHHHHHH
T ss_pred hcC-CCCCccHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHhcc
Confidence 542 234579999999765321 11246999999999999999985
No 12
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=100.00 E-value=4.2e-34 Score=265.95 Aligned_cols=265 Identities=17% Similarity=0.269 Sum_probs=187.2
Q ss_pred CCCCCCCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhc-CccCCCCCCccccccc
Q 021726 31 ALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTH-DLQFCSRPALLSQQKV 109 (308)
Q Consensus 31 ~lpPGP~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~-~~~f~~Rp~~~~~~~~ 109 (308)
+.||||+++|++||++++ .++++..+.+|+++|||||++++|+.++|+|+||+++++||.++ .+.|.+|+........
T Consensus 14 ~~~PGP~~~PliGn~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~~f~~r~~~~~~~~~ 92 (485)
T 3nxu_A 14 LGIPGPTPLPFLGNILSY-HKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGFM 92 (485)
T ss_dssp HTCCCCCCBTTTBTGGGG-GGCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCCCCCCSCCGGG
T ss_pred CCCCCCCCcCeecCcHHh-hcChHHHHHHHHHHcCCeEEEEeCCCCEEEECCHHHHHHHHhccchhhccCCccccccccc
Confidence 458999999999999998 67889999999999999999999999999999999999999988 6788888764433221
Q ss_pred ccCCcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHHHHh
Q 021726 110 SYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGF 189 (308)
Q Consensus 110 ~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~f 189 (308)
+.++ +..+|+.|+++||++ ++.|+.++++++.+.+.++++.+++.|.+.+..|+++|+.+.+.++++|+|+.++|
T Consensus 93 ---~~~l-~~~~g~~w~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~g~~~d~~~~~~~~~~dvi~~~~f 167 (485)
T 3nxu_A 93 ---KSAI-SIAEDEEWKRLRSLL-SPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSF 167 (485)
T ss_dssp ---GGST-TTCCHHHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEHHHHHHHHHHHHHHHHHH
T ss_pred ---ccCc-cccCCcHHHHHHhhc-ChhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCcHHHHHHHHHHHHHHHHHc
Confidence 2343 445899999999997 89999999999999999999999999976545578999999999999999999999
Q ss_pred CCcccccccccchHHHHHHHHHHHHhcccc---ccccccccccccc-cccchHHHHHHHHHHHHHHHHHHHHHHhhCccC
Q 021726 190 GKSYEVEDQGISERSRFGALLTETQALVVG---FFVTDYFPSIGWV-DNITGMIRRLERNFKEFDAFHQELIEEHLDPAR 265 (308)
Q Consensus 190 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~P~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 265 (308)
|.+++..+. ..+.+.......+..... ......+|++.++ .+.. ......+..+.+.+.+.+.++++.+.
T Consensus 168 G~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-- 241 (485)
T 3nxu_A 168 GVNIDSLNN---PQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLN-ICVFPREVTNFLRKSVKRMKESRLED-- 241 (485)
T ss_dssp SCCCCGGGC---TTCHHHHHHTTSCCCCTTSHHHHHHHHCTTHHHHHHHTT-CCSSCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCccccccC---CCcHHHHHHHHHhchhhHHHHHHHHHHhhhhHHHHHHhh-hhhchHHHHHHHHHHHHHHHHHHHhc--
Confidence 999874221 122333332222211100 0122345544321 0000 00001123344455555555555332
Q ss_pred CCCCCCcHHHHHHHhhhhc--CCCCCCCHHHHHHHHHHHhhccC
Q 021726 266 IKTDQEDIVDVLLQIWKQR--GSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 266 ~~~~~~dll~~ll~~~~~~--~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
......|+++.|+++..++ +....+|++++.+++.++++||+
T Consensus 242 ~~~~~~d~l~~ll~~~~~~~~~~~~~l~~~ei~~~~~~l~~AG~ 285 (485)
T 3nxu_A 242 TQKHRVDFLQLMIDSQNSKETESHKALSDLELVAQSIIFIFAGY 285 (485)
T ss_dssp C---CCCHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHH
T ss_pred cCCCcccHHHHHHHhhhccccccccCCCHHHHHHHHHHHHHHhh
Confidence 1234679999999875422 11246999999999999999985
No 13
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=100.00 E-value=7e-33 Score=255.12 Aligned_cols=261 Identities=16% Similarity=0.238 Sum_probs=203.8
Q ss_pred CCCCCCCCC-CcccccccCCCCCCchHHHHHHHHhhC-CeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCccccc
Q 021726 30 IALPPGPRG-LPFIGNLHQFDYSNPQNYFWRLSKQYG-PMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQ 107 (308)
Q Consensus 30 ~~lpPGP~~-~P~lGn~~~~~~~~~~~~~~~~~~~YG-~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~ 107 (308)
.++||||++ +|++||++++ .++++..+.+|+++|| +||++++|+.++|||+||+++++++.+++..|++|+......
T Consensus 2 ~~~PPg~p~~~P~iG~~~~~-~~~~~~~~~~~~~~yG~~i~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~ 80 (450)
T 3gw9_A 2 GKLPPVYPVTVPILGHIIQF-GKSPLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVYSFMV 80 (450)
T ss_dssp CSCCCBCCCCSTTTBTHHHH-HHCHHHHHHHHHHHHTCSEEEEEETTEEEEEECCGGGTHHHHSSCTTTEESTGGGGGGH
T ss_pred CCCCCCCCCCcchhccHHHH-ccCHHHHHHHHHHHhCCCeEEEEECCEeEEEEeCHHHHHHHHhCChhhccchhhHHHHH
Confidence 468999665 9999999988 6789999999999999 999999999999999999999999999888898887544333
Q ss_pred ccccCCcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHH-HHHhhcCCCCcccHHHHHHHHHHHHHHH
Q 021726 108 KVSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIE-KVSRSAVASKPVNLSELMKSLTSSITCR 186 (308)
Q Consensus 108 ~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~-~l~~~~~~~~~vd~~~~~~~~t~~vi~~ 186 (308)
... |.++++..+|+.|+++||++ ++.|+.++++++.+.+.++++.+++ .|.+ .++++|+.+.+.+++++++++
T Consensus 81 ~~~--g~~~~~~~~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~ll~~~~~~---~~~~vd~~~~~~~~~~~~i~~ 154 (450)
T 3gw9_A 81 PVF--GEGVAYAAPYPRMREQLNFL-AEELTIAKFQNFVPAIQHEVRKFMAANWDK---DEGEINLLEDCSTMIINTACQ 154 (450)
T ss_dssp HHH--CTTSGGGSCHHHHHHHHHHH-HHTTSGGGCTTHHHHHHHHHHHHHHHHSCS---SEEEEEHHHHHHHHHHHHHHH
T ss_pred HHh--cCCcccCCCcHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcc---CCCcccHHHHHHHHHHHHHHH
Confidence 332 44566666899999999996 8999999999999999999999999 6642 355799999999999999999
Q ss_pred HHhCCcccccccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCcc-C
Q 021726 187 IGFGKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPA-R 265 (308)
Q Consensus 187 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~ 265 (308)
++||.+++... ....+.+.+..+.... .....++|++++++ .+..++..++.+.+.+++.++++++++.. .
T Consensus 155 ~~fG~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~P~l~~lp--~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~ 226 (450)
T 3gw9_A 155 CLFGEDLRKRL----DARRFAQLLAKMESSL--IPAAVFLPILLKLP--LPQSARCHEARTELQKILSEIIIARKEEEVN 226 (450)
T ss_dssp HHSCHHHHHHS----CHHHHHHHHHHHHHTC--CGGGGTCGGGGGSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcchhhhh----hhHHHHHHHHHHHhcc--ccchhcccchhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999886211 1233444444443322 23456788887653 23445667778888889999998887532 1
Q ss_pred CCCCCCcHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 266 IKTDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 266 ~~~~~~dll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
.+...+|+++.|+++..+++ ..++++++.++++++++||+
T Consensus 227 ~~~~~~d~l~~ll~~~~~~~--~~l~~~~i~~~~~~~~~AG~ 266 (450)
T 3gw9_A 227 KDSSTSDLLSGLLSAVYRDG--TPMSLHEVCGMIVAAMFAGQ 266 (450)
T ss_dssp TSCCCCSHHHHHHHCBCTTS--CBCCHHHHHHHHHHHHHHHH
T ss_pred cCCccchHHHHHHHhhccCC--CCCCHHHHHHHHHHHHHHhh
Confidence 12356899999998764332 36999999999999999985
No 14
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=100.00 E-value=1.3e-32 Score=254.63 Aligned_cols=256 Identities=18% Similarity=0.218 Sum_probs=196.1
Q ss_pred CCCCCCCCCCC-CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcccc
Q 021726 28 KSIALPPGPRG-LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQ 106 (308)
Q Consensus 28 ~~~~lpPGP~~-~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~ 106 (308)
+..+.||||++ +|++||++++ .++++..+.+|+++|||||++++|+.++|||+||+++++++.+++..|+.++.....
T Consensus 8 ~g~~~PP~~~~~lP~iG~~~~~-~~~~~~~~~~~~~kYG~i~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~ 86 (461)
T 3ld6_A 8 AGVKSPPYIFSPIPFLGHAIAF-GKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRL 86 (461)
T ss_dssp --CCCCCBCCCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHH
T ss_pred cCCCCCCCCCCCcCeeeeHHHh-hhCHHHHHHHHHHHhCCEEEEEECCccEEEEeCHHHHHHHHhCCccccCCCcchhhh
Confidence 34467888875 9999999988 789999999999999999999999999999999999999999998888877643322
Q ss_pred -cccccCCcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHH
Q 021726 107 -QKVSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITC 185 (308)
Q Consensus 107 -~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~ 185 (308)
.... |.++++..+|+.|+++|+++ ++.|+...++++.+.+.++++.+++.|.+ +.++|+.+.+.++++++++
T Consensus 87 ~~~~~--g~~~~~~~~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~ 159 (461)
T 3ld6_A 87 TTPVF--GKGVAYDVPNPVFLEQKKML-KSGLNIAHFKQHVSIIEKETKEYFESWGE----SGEKNVFEALSELIILTAS 159 (461)
T ss_dssp HHHHH--CTTSGGGSCHHHHHHHHHHH-HHHSSHHHHHHHHHHHHHHHHHHGGGGCS----EEEEEHHHHHHHHHHHHHH
T ss_pred hhccC--CCccccCCCcHHHHHHHHhc-cccccHHHHhhhhHHHHHHHHHHHHHHhh----cCCccHHHHHHHHHHHHHH
Confidence 2222 45667777899999999996 89999999999999999999999988852 4568999999999999999
Q ss_pred HHHhCCcccccccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccC
Q 021726 186 RIGFGKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPAR 265 (308)
Q Consensus 186 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 265 (308)
.++||.+++. .. .+.+......+..... .....+|.+.+ .+..++..++.+.+.+++.+.|+++++.
T Consensus 160 ~~~fG~~~~~--~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~i~~r~~~-- 226 (461)
T 3ld6_A 160 HCLHGKEIRS--QL---NEKVAQLYADLDGGFS--HAAWLLPGWLP----LPSFRRRDRAHREIKDIFYKAIQKRRQS-- 226 (461)
T ss_dssp HHHTCHHHHH--TC---CHHHHHHHHHHHTTSS--HHHHHSCTTSC----CHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHcCcchhh--hh---hhhhhhhhhhhhhhhh--hHHHhhhhhcc----CcHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 9999998862 11 2223223233322211 12223444332 1233456677788888999999988764
Q ss_pred CCCCCCcHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 266 IKTDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 266 ~~~~~~dll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
.+..+|+++.|+++..+++ ..+|++++.+++.++++||+
T Consensus 227 -~~~~~d~l~~ll~~~~~~~--~~ls~~ei~~~~~~~~~aG~ 265 (461)
T 3ld6_A 227 -QEKIDDILQTLLDATYKDG--RPLTDDEVAGMLIGLLLAGQ 265 (461)
T ss_dssp -CCCCCSHHHHHHTCBCTTS--CBCCHHHHHHHHHHHHHHHH
T ss_pred -CCCCcchhhhhHHhhhccc--CCCCHHHHHHHHHhhhhccc
Confidence 2346899999998765432 36999999999999999985
No 15
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=99.98 E-value=4.6e-31 Score=245.01 Aligned_cols=262 Identities=12% Similarity=0.161 Sum_probs=193.1
Q ss_pred CCCCCCCCCCcccccccCCC----CCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCccc
Q 021726 30 IALPPGPRGLPFIGNLHQFD----YSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLS 105 (308)
Q Consensus 30 ~~lpPGP~~~P~lGn~~~~~----~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~ 105 (308)
...+|||+++|++||++++. .++++..+.+|+++||||+++++|+.++|+|+||+++++|+.++ ..|.+|+....
T Consensus 23 l~~~PGP~~~p~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~~~~r~~~~~ 101 (482)
T 3k9v_A 23 VTDLPGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRTE-SAHPQRLEIKP 101 (482)
T ss_dssp GGGCCCSCCCTTTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTC-CSSCCCCCCHH
T ss_pred CCCCCCCCCCCccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCCCCEEEEcCHHHHHHHHHhc-CCCCCCCCchH
Confidence 34589999999999998762 23578899999999999999999999999999999999999874 57888875432
Q ss_pred c---cccccCCcceEeccCChhHHHHHHHHHHhh-CChHHHhhhHHHHHHHHHHHHHHHHhhcC-CCCcccHHHHHHHHH
Q 021726 106 Q---QKVSYNGLDVAFAPYNAYWREIRKICVVHL-FNSNRVQSFRPIREGEVSILIEKVSRSAV-ASKPVNLSELMKSLT 180 (308)
Q Consensus 106 ~---~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~-f~~~~l~~~~~~~~~~~~~l~~~l~~~~~-~~~~vd~~~~~~~~t 180 (308)
. ......+.+++ ..+|+.|+++||++ ++. ++.+.++.+.+.+.++++.+++.+.+.+. .|+++|+.+.+.+++
T Consensus 102 ~~~~~~~~~~~~~l~-~~~g~~w~~~Rr~~-~~~f~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~g~~vd~~~~~~~~t 179 (482)
T 3k9v_A 102 WKAYRDHRNEAYGLM-ILEGQEWQRVRSAF-QKKLMKPVEIMKLDKKINEVLADFLERMDELCDERGRIPDLYSELNKWS 179 (482)
T ss_dssp HHHHHHHHTCCCCTT-TCCHHHHHHHHHHH-HHHHTCHHHHGGGHHHHHHHHHHHHHHHHHHCCTTSCCTTHHHHHHHHH
T ss_pred HHHHHHhcCCCCCce-eCCCchHHHHHHHh-hHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 1 11112244544 45799999999997 555 58888999999999999999999986543 467899999999999
Q ss_pred HHHHHHHHhCCcccccccc-cchHHHHHHHHHHHHhcccccccccccc--ccccccccchHHHHHHHHHHHHHHHHHHHH
Q 021726 181 SSITCRIGFGKSYEVEDQG-ISERSRFGALLTETQALVVGFFVTDYFP--SIGWVDNITGMIRRLERNFKEFDAFHQELI 257 (308)
Q Consensus 181 ~~vi~~~~fG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~P--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 257 (308)
+|+|++++||.+++.++.+ ......+.+.+..++..... ..++| ++.++. ....++..+..+.+.+++.+++
T Consensus 180 ~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~i 254 (482)
T 3k9v_A 180 FESICLVLYEKRFGLLQKETEEEALTFITAIKTMMSTFGK---MMVTPVELHKRLN--TKVWQAHTLAWDTIFKSVKPCI 254 (482)
T ss_dssp HHHHHHHHHSCCCCSSSTTSTTSSHHHHHHHHHHHTTGGG---GSSSCHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccCCCCCCcchHHHHHHHHHHHHHHHHHH---HHhhhHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998643321 01234555555555543322 22334 222221 2233455566677777888888
Q ss_pred HHhhCccCCCCCCCcHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 258 EEHLDPARIKTDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 258 ~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
++++++.. .....|+++.+++. + .+|++++.+++.++++||+
T Consensus 255 ~~r~~~~~-~~~~~d~l~~ll~~---~----~l~~~ei~~~~~~~~~AG~ 296 (482)
T 3k9v_A 255 DNRLQRYS-QQPGADFLCDIYQQ---D----HLSKKELYAAVTELQLAAV 296 (482)
T ss_dssp HHHHHHTT-TCTTSCHHHHHHHH---T----CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-cCCchHHHHHHHhc---c----CCCHHHHHHHHHHHHHhhh
Confidence 88875432 22357888888863 2 4999999999999999984
No 16
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=99.97 E-value=6.2e-30 Score=237.31 Aligned_cols=262 Identities=12% Similarity=0.175 Sum_probs=188.5
Q ss_pred CCCCCCCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcccccccc
Q 021726 31 ALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQKVS 110 (308)
Q Consensus 31 ~lpPGP~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~~~~ 110 (308)
+.||||+++|++||++++..++++..+.+|+++||||+++++|+.++|+|+||+++++|+.++ .|. ++.......+.
T Consensus 3 ~~~PGP~~~p~iG~l~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~~~~~~~il~~~--~f~-~~~~~~~~~~~ 79 (470)
T 2ij2_A 3 KEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDES--RFD-KNLSQALKFVR 79 (470)
T ss_dssp CCCCCCCCCGGGTTGGGGCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCTT--TEE-ECCCHHHHHHH
T ss_pred CCCCCCCCCCccccHHHHhcccchHHHHHHHHHhCCeEEEecCCccEEEECCHHHHHHHHhhc--CcC-cCchhHHHHHH
Confidence 357999999999999987445788899999999999999999999999999999999999542 453 32211111111
Q ss_pred -cCCcceEec-cCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHHHH
Q 021726 111 -YNGLDVAFA-PYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIG 188 (308)
Q Consensus 111 -~~~~~~~~~-~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~ 188 (308)
..+.+++++ .+|+.|+++||++ ++.|+.++++++.+.+.++++++++.|... .+++++|+.+.+.++++|+|+.++
T Consensus 80 ~~~~~~l~~~~~~g~~w~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-~~~~~vd~~~~~~~~~~~vi~~~~ 157 (470)
T 2ij2_A 80 DFAGDGLFTSWTHEKNWKKAHNIL-LPSFSQQAMKGYHAMMVDIAVQLVQKWERL-NADEHIEVPEDMTRLTLDTIGLCG 157 (470)
T ss_dssp HHHTTSGGGSCTTSHHHHHHHHHH-GGGGSTTTHHHHHHHHHHHHHHHHHHHHTC-CTTCCEEHHHHHHHHHHHHHHHHH
T ss_pred HhcCCceEEcCCCchHHHHHHHHh-ccccCHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCeEEHHHHHHHHHHHHHHHHH
Confidence 113455444 4799999999997 899999999999999999999999999742 235689999999999999999999
Q ss_pred hCCcccccccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCC
Q 021726 189 FGKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKT 268 (308)
Q Consensus 189 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 268 (308)
||.+++..+.+ ....+...+...+....... ...|++.++ +....++..+..+.+.+++.++|+++++. +.
T Consensus 158 fG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~r~~~---~~ 228 (470)
T 2ij2_A 158 FNYRFNSFYRD--QPHPFITSMVRALDEAMNKL--QRANPDDPA--YDENKRQFQEDIKVMNDLVDKIIADRKAS---GE 228 (470)
T ss_dssp HSCCCCGGGCS--SCCHHHHHHHHHHHHHHHTC-----CTTSGG--GHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CC
T ss_pred cCCcccccccC--CCCHHHHHHHHHHHHHHHHH--hhhhhHhhc--cchHHHHHHHHHHHHHHHHHHHHHHHHhc---cc
Confidence 99988631111 11233333333332211111 111334333 22334556667778888999999988753 23
Q ss_pred CCCcHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 269 DQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 269 ~~~dll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
+++|+++.|+++.++++ +..+|++++.+++.++++||+
T Consensus 229 ~~~dll~~ll~~~~~~~-~~~ls~~ei~~~~~~~~~AG~ 266 (470)
T 2ij2_A 229 QSDDLLTHMLNGKDPET-GEPLDDENIRYQIITFLIAGH 266 (470)
T ss_dssp CCSSHHHHHHHCCCTTT-CCCCCHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHhccCccc-CCCCCHHHHHHHHHHHHHHhh
Confidence 45799999998654211 236999999999999999985
No 17
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=99.97 E-value=8.9e-31 Score=242.14 Aligned_cols=260 Identities=18% Similarity=0.217 Sum_probs=192.6
Q ss_pred hccCCCCCCCCC-CCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCC
Q 021726 24 YKTIKSIALPPG-PRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPA 102 (308)
Q Consensus 24 ~~~~~~~~lpPG-P~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~ 102 (308)
++..+..++||| |+++|++||++++ .++++..+.+|+++|||||++++|+.++|||++|+++++++.++...|..++.
T Consensus 4 ~~~~~~~~~PPg~P~~lP~iG~l~~~-~~~~~~~~~~~~~~yG~v~~l~l~g~~~vvv~~~~~~~~il~~~~~~~~~~~~ 82 (461)
T 3i3k_A 4 KTLPAGVKSPPYIFSPIPFLGHAIAF-GKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDV 82 (461)
T ss_dssp ------CCCCCBCCCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHH
T ss_pred ccCCCCCCCCCCCCCCCCccccHHhh-ccCHHHHHHHHHHHhCCEEEEEecCceEEEEeChHHHHHHHhccccccccchH
Confidence 344456689999 8999999999988 67899999999999999999999999999999999999999988766665432
Q ss_pred cc-cccccccCCcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH
Q 021726 103 LL-SQQKVSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTS 181 (308)
Q Consensus 103 ~~-~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~ 181 (308)
.. ....+. |.++++..+|+.|+++||++ .+.|+.+.++++.+.+.+++..+++.|.+ +..+|+.+.+..+++
T Consensus 83 ~~~~~~~~~--g~g~~~~~~g~~w~~~Rr~~-~~~f~~~~l~~~~~~~~~~~~~ll~~l~~----~~~~dl~~~~~~~~~ 155 (461)
T 3i3k_A 83 YSRLTTPVF--GKGVAYDVPNPVFLEQKKML-KSGLNIAHFKQHVSIIEKETKEYFESWGE----SGEKNVFEALSELII 155 (461)
T ss_dssp HHHHHHHHH--CTTSGGGSCHHHHHHHHHHH-HHHSSHHHHHHHHHHHHHHHHHHGGGGCS----EEEEEHHHHHHHHHH
T ss_pred HHHhhhhhc--CCeeeeCCCcHHHHHHHHHH-hhhhCHHHHHHHHHHHHHHHHHHHHHhhh----cCCcCHHHHHHHHHH
Confidence 21 111222 45666666799999999997 88899999999999999999999998852 345899999999999
Q ss_pred HHHHHHHhCCcccccccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 021726 182 SITCRIGFGKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHL 261 (308)
Q Consensus 182 ~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 261 (308)
+++++.+||.++.. .. ...+......+..... ....++|.+ ++ .+..++..++.+.+.+++.+.+++++
T Consensus 156 ~~~~~~~~G~~~~~--~~---~~~~~~~~~~~~~~~~--~~~~~~P~~--l~--~~~~~~~~~~~~~~~~~~~~~i~~~~ 224 (461)
T 3i3k_A 156 LTASHCLHGKEIRS--QL---NEKVAQLYADLDGGFS--HAAWLLPGW--LP--LPSFRRRDRAHREIKDIFYKAIQKRR 224 (461)
T ss_dssp HHHHHHHTCHHHHH--TC---CHHHHHHHHHHHTTSS--HHHHHSCTT--SC--CHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHccHhhhh--HH---HHHHHHHHHHHHhccc--cchhhcccc--cC--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988752 11 1222233333222111 122234532 21 12345566778888899999999987
Q ss_pred CccCCCCCCCcHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 262 DPARIKTDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 262 ~~~~~~~~~~dll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
+.. ...+|+++.++++..+++ ..+|++++.+.+.++++||+
T Consensus 225 ~~~---~~~~d~l~~ll~~~~~~~--~~l~~~~i~~~~~~l~~ag~ 265 (461)
T 3i3k_A 225 QSQ---EKIDDILQTLLDATYKDG--RPLTDDEVAGMLIGLLLAGQ 265 (461)
T ss_dssp TCC---CCCCSHHHHHHTCBCTTS--CBCCHHHHHHHHHHHHHHHH
T ss_pred hcc---cccccHHHHHHHhhhccC--CCCCHHHHHHHHHHHHhhcc
Confidence 642 346899999998764332 36999999999999999984
No 18
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=99.97 E-value=8.9e-30 Score=235.29 Aligned_cols=254 Identities=16% Similarity=0.212 Sum_probs=173.7
Q ss_pred CCCCCC-CCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcccccc
Q 021726 30 IALPPG-PRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQK 108 (308)
Q Consensus 30 ~~lpPG-P~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~~ 108 (308)
.++||| |.++|++||++++ ..+++..+.+|+++||||+++++|+.+++||+||+++++|+.+++..|++++.......
T Consensus 3 ~~~PPg~p~~~P~iG~~~~~-~~~~~~~~~~l~~~yG~v~~~~~~~~~~~vv~~~~~~~~il~~~~~~~~~~~~~~~~~~ 81 (455)
T 2cib_A 3 AVALPRVSGGHDEHGHLEEF-RTDPIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMTP 81 (455)
T ss_dssp --CCCBCSCCCBTTBTHHHH-TTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTTSCGGGHH
T ss_pred CCCCCCCCCCCCCccCHHHH-hhChHHHHHHHHHHcCCEEEEEeCCceEEEECCHHHHHHHHhcCccccCcccchhHHHh
Confidence 368998 8899999999987 67899999999999999999999999999999999999999887778887765432222
Q ss_pred cccCCcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHHHH
Q 021726 109 VSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIG 188 (308)
Q Consensus 109 ~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~ 188 (308)
.. +.++ +. +|+.|+++||++ ++.|+.++++++.+.+.++++.+++.|.. +.++|+.+.+.+++++++++++
T Consensus 82 ~~--g~~~-~~-~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~~~~----~~~vd~~~~~~~~~~~vi~~~~ 152 (455)
T 2cib_A 82 IF--GEGV-VF-DASPERRKEMLH-NAALRGEQMKGHAATIEDQVRRMIADWGE----AGEIDLLDFFAELTIYTSSACL 152 (455)
T ss_dssp HH--C-----------------------CCHHHHHHHHHHHHHHHHHHHTTCCS----EEEEEHHHHHHHHHHHHHHHHH
T ss_pred hc--CCcc-cc-CcHHHHHHHhhh-ccccCHHHHHHHHHHHHHHHHHHHHHhCC----CCcEeHHHHHHHHHHHHHHHHH
Confidence 22 3343 33 699999999997 89999999999999999999999998752 4579999999999999999999
Q ss_pred hCCcccccccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCC
Q 021726 189 FGKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKT 268 (308)
Q Consensus 189 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 268 (308)
||.+++. .. ...+......+..... .+..++|++. ....++..++.+.+.+++.++|+++++......
T Consensus 153 fG~~~~~--~~---~~~~~~~~~~~~~~~~--~~~~~~p~l~-----~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~ 220 (455)
T 2cib_A 153 IGKKFRD--QL---DGRFAKLYHELERGTD--PLAYVDPYLP-----IESFRRRDEARNGLVALVADIMNGRIANPPTDK 220 (455)
T ss_dssp TCHHHHT--TC---CHHHHHHHHHHHTTCC--GGGGTCTTCS-----CHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred cCCCcch--hh---hHHHHHHHHHHHhhhh--HHHHhcccCC-----ChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 9998762 11 1234444444432111 1223455432 112345556777888899999998875421111
Q ss_pred CCCcHHHHHHHhhhhcCCCCC-CCHHHHHHHHHHHhhccC
Q 021726 269 DQEDIVDVLLQIWKQRGSKVD-ITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 269 ~~~dll~~ll~~~~~~~~~~~-~t~~~i~~~~~~l~~a~~ 307 (308)
..+|+++.|+++.++++ .. +|++++.+++.++++||+
T Consensus 221 ~~~dll~~ll~~~~~~~--~~~l~~~~i~~~~~~l~~AG~ 258 (455)
T 2cib_A 221 SDRDMLDVLIAVKAETG--TPRFSADEITGMFISMMFAGH 258 (455)
T ss_dssp -CCCHHHHHHHCBCTTS--SBSCCHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHhhhhcC--CCCCCHHHHHHHHHHHHHhcc
Confidence 23499999998754322 24 999999999999999985
No 19
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=99.96 E-value=4.8e-29 Score=229.69 Aligned_cols=247 Identities=17% Similarity=0.262 Sum_probs=182.5
Q ss_pred CCCCCCCCCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcccccc
Q 021726 29 SIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQK 108 (308)
Q Consensus 29 ~~~lpPGP~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~~ 108 (308)
+.++||||+++|++||++++ ..+++ .+.+++++||||+++++++.++|+|+||+++++|+.+++..|+++... ....
T Consensus 10 ~~~~pPgp~~~P~iG~~~~~-~~~~~-~~~~~~~~yg~v~~~~~~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~-~~~~ 86 (444)
T 2ve3_A 10 SLPIPPGDFGLPWLGETLNF-LNDGD-FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQATWPL-STRI 86 (444)
T ss_dssp CCCCCCCCCCBTTTBTHHHH-HHCTT-HHHHHHHHHCSSEEEEETTEEEEEECSHHHHHHHTSSCTTTEEEECCH-HHHH
T ss_pred CCCCCCCCCCCCccccHHHH-hcCcH-HHHHHHHHcCCeEEEeeCCCCEEEEcCHHHHHHHHhCCCcccccchhH-HHHH
Confidence 44689999999999999876 45567 788999999999999988889999999999999998876667643211 1111
Q ss_pred cccCCcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHHHH
Q 021726 109 VSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIG 188 (308)
Q Consensus 109 ~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~ 188 (308)
+.+ ..+++ ..+|+.|+++||++ ++.|+.++++++.+.++++++.+++.|.. ++++|+.+.+.+++++++++++
T Consensus 87 ~~g-~~~l~-~~~g~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~----~~~vd~~~~~~~~~~~vi~~~~ 159 (444)
T 2ve3_A 87 LLG-PNALA-TQMGEIHRSRRKIL-YQAFLPRTLDSYLPKMDGIVQGYLEQWGK----ANEVIWYPQLRRMTFDVAATLF 159 (444)
T ss_dssp HHC-TTSGG-GCCHHHHHHHHHHH-HGGGCHHHHHTTHHHHHHHHHHHHHHHHH----SSEEEHHHHHHHHHHHHHHHHH
T ss_pred HhC-ccccc-cCCchHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHhcC----CCcEeHHHHHHHHHHHHHHHHH
Confidence 221 22444 45799999999996 89999999999999999999999999963 5689999999999999999999
Q ss_pred hCCcccccccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCC
Q 021726 189 FGKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKT 268 (308)
Q Consensus 189 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 268 (308)
|| +.+.++ ..+.+........... +...+|.. ..++..++.+.+.+++.++|++++++ +.
T Consensus 160 fG-~~~~~~------~~~~~~~~~~~~~~~~--~~~~~p~~--------~~~~~~~~~~~~~~~~~~~i~~r~~~---~~ 219 (444)
T 2ve3_A 160 MG-EKVSQN------PQLFPWFETYIQGLFS--LPIPLPNT--------LFGKSQRARALLLAELEKIIKARQQQ---PP 219 (444)
T ss_dssp TC-HHHHSC------TTHHHHHHHHHHHHSS--CCCCSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHTS---CC
T ss_pred cC-CCcccH------HHHHHHHHHHHHHHhc--CCccCCCc--------HHHHHHHHHHHHHHHHHHHHHHHhcC---CC
Confidence 99 443111 1222222222221111 11112211 12345566778888899999998764 22
Q ss_pred CCCcHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 269 DQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 269 ~~~dll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
..+|+++.|+++.++++ ..+|++++.+++.++++||+
T Consensus 220 ~~~d~l~~ll~~~~~~~--~~l~~~~i~~~~~~~~~AG~ 256 (444)
T 2ve3_A 220 SEEDALGILLAARDDNN--QPLSLPELKDQILLLLFAGH 256 (444)
T ss_dssp CCSSHHHHHHHCBCTTS--CBCCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHhccccCC--CCCCHHHHHHHHHHHHHHcc
Confidence 46799999998754322 36999999999999999985
No 20
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=99.96 E-value=6.2e-29 Score=231.14 Aligned_cols=262 Identities=14% Similarity=0.139 Sum_probs=182.3
Q ss_pred CCCCCCCCCCcccccccCCC----CCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCccc
Q 021726 30 IALPPGPRGLPFIGNLHQFD----YSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLS 105 (308)
Q Consensus 30 ~~lpPGP~~~P~lGn~~~~~----~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~ 105 (308)
...+|||+++|+. |++++. ...++..+.+|+++||||+++++|+.++|+|+||+++++|+.+++ .|++|+....
T Consensus 8 L~~~PGP~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~kYG~i~~~~~g~~~~vvv~dp~~~~~il~~~~-~f~~r~~~~~ 85 (487)
T 3n9y_A 8 FNEIPSPGDNGWL-NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSEG-PNPERFLIPP 85 (487)
T ss_dssp GGGSCCSCSCHHH-HHHHHHHHTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHHTCC-SSCCCCCCHH
T ss_pred HhhCCCCCCCChh-hHHHHHhcCCCcchhHHHHHHHHHcCceeeccCCCCCEEEEcCHHHHHHHHHhCC-CCCCCCCCcH
Confidence 3458999988875 665542 235788999999999999999999999999999999999998764 7888875432
Q ss_pred cc---ccccCCcceEeccCChhHHHHHHHHHHh-hCChHHHhhhHHHHHHHHHHHHHHHHhhc----CCCCcccHHHHHH
Q 021726 106 QQ---KVSYNGLDVAFAPYNAYWREIRKICVVH-LFNSNRVQSFRPIREGEVSILIEKVSRSA----VASKPVNLSELMK 177 (308)
Q Consensus 106 ~~---~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~-~f~~~~l~~~~~~~~~~~~~l~~~l~~~~----~~~~~vd~~~~~~ 177 (308)
.. .....+.+ ++..+|+.|+++||++ ++ +|+.++++++.+.++++++.+++.|.+.. .+++++|+.+.+.
T Consensus 86 ~~~~~~~~~~~~~-l~~~~g~~w~~~Rr~l-~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~ 163 (487)
T 3n9y_A 86 WVAYHQYYQRPIG-VLLKKSAAWKKDRVAL-NQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLF 163 (487)
T ss_dssp HHHHHHHTTCCCC-GGGCCHHHHHHHHHHH-HHHHTSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSSSEEECCHHHHH
T ss_pred HHHHHHHccccCC-CccCCcHHHHHHHHhc-CcccCCchHHHHhhhHHHHHHHHHHHHHHHHhcccccCCCCccHHHHHH
Confidence 21 11112334 4556899999999997 66 69999999999999999999999997532 2356899999999
Q ss_pred HHHHHHHHHHHhCCcccccccc-cchHHHHHHHHHHHHhccccccccccccc--cccccccchHHHHHHHHHHHHHHHHH
Q 021726 178 SLTSSITCRIGFGKSYEVEDQG-ISERSRFGALLTETQALVVGFFVTDYFPS--IGWVDNITGMIRRLERNFKEFDAFHQ 254 (308)
Q Consensus 178 ~~t~~vi~~~~fG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~P~--l~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (308)
++++|+|+.++||.+++..+.. ......+...+..++.... ...++|. ++++. ....++..+..+.+.+.+.
T Consensus 164 ~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~l~~~~~--~~~~~~~~~~~~~~~~~~~ 238 (487)
T 3n9y_A 164 RFAFESITNVIFGERQGMLEEVVNPEAQRFIDAIYQMFHTSV---PMLNLPPDLFRLFR--TKTWKDHVAAWDVIFSKAD 238 (487)
T ss_dssp HHHHHHHHHHHHSSCCCTTSSSCCHHHHHHHHHHHHHHHHHG---GGTTSCHHHHHHHC--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCCCChHHHHHHHHHHHHHHHHH---HHHhcCHHHHhhcc--cHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998743221 0122334444444443222 2233443 22221 1222333344444455555
Q ss_pred HHHHHhhCcc----CCCCCCCcHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 255 ELIEEHLDPA----RIKTDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 255 ~~i~~~~~~~----~~~~~~~dll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
+.++++++.. ....+..|+++.+++. + .+|++++.+++.++++||+
T Consensus 239 ~~i~~~~~~~~~~~~~~~~~~d~l~~ll~~---~----~l~~~ei~~~~~~~~~AG~ 288 (487)
T 3n9y_A 239 IYTQNFYWELRQKGSVHHDYRGILYRLLGD---S----KMSFEDIKANVTEMLAGGV 288 (487)
T ss_dssp HHHHHHHHHHHHHCCCCSSCCCHHHHHHHS---C----SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHhc---C----CCCHHHHHHHHHHHHHHhh
Confidence 5555443221 1112457999999863 1 4999999999999999985
No 21
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=99.96 E-value=2.7e-29 Score=232.69 Aligned_cols=252 Identities=16% Similarity=0.220 Sum_probs=164.5
Q ss_pred CCCCCCCCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCC-cccccc
Q 021726 30 IALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPA-LLSQQK 108 (308)
Q Consensus 30 ~~lpPGP~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~-~~~~~~ 108 (308)
...||||+++|++||++++ .++++..+.++.+ ||||+++++|+.++++|+||+++++|+.++ .|..++. ......
T Consensus 22 ~eppPgP~~~P~iG~~~~~-~~~p~~~~~~l~~-yGpv~~~~~g~~~~~vv~~~~~i~~il~~~--~~~~~~~~~~~~~~ 97 (467)
T 3dbg_A 22 REPPVAGGGVPLLGHGWRL-ARDPLAFMSQLRD-HGDVVRIKLGPKTVYAVTNPELTGALALNP--DYHIAGPLWESLEG 97 (467)
T ss_dssp CBCCEECCCCSTTHHHHHH-HHCHHHHHHHHGG-GCSEEEEEETTEEEEEECSHHHHHHHHHCT--TC------------
T ss_pred CCCCCCCCCCCcccchHHh-ccCHHHHHHHHHH-hCCEEEEEeCCccEEEECCHHHHHHHHhCc--CcccccchHHHHHH
Confidence 4458999999999999988 6789999999987 999999999999999999999999999876 6644432 222222
Q ss_pred cccCCcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHHHH
Q 021726 109 VSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIG 188 (308)
Q Consensus 109 ~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~ 188 (308)
..+ ..++ +..+|+.|+++||++ ++.|+.++++++.+.+.++++.+++.|. .++++|+.+.+.++++++++.++
T Consensus 98 ~~g-~~~l-~~~dg~~h~~~R~~l-~~~fs~~~l~~~~~~i~~~~~~l~~~l~----~~~~~d~~~~~~~~~~~vi~~~~ 170 (467)
T 3dbg_A 98 LLG-KEGV-ATANGPLHRRQRRTI-QPAFRLDAIPAYGPIMEEEAHALTERWQ----PGKTVDATSESFRVAVRVAARCL 170 (467)
T ss_dssp --------------------CGGG-HHHHSTTTSTTTHHHHHHHHHHHHHHSC----TTSCEEHHHHHHHHHHHHHHHHH
T ss_pred hcC-CCCc-ccCCcHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHhc----cCCcCcHHHHHHHHHHHHHHHHH
Confidence 221 1344 455899999999997 8999999999999999999999999986 36789999999999999999999
Q ss_pred hCCcccccccccchHHHHHHHHHHHHhccccccccccccc--cccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCC
Q 021726 189 FGKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPS--IGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARI 266 (308)
Q Consensus 189 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (308)
||.+++. .....+......+..... ...++|+ +.+++ .+..++..++.+.+.+++.+++++++++
T Consensus 171 ~g~~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~r~~~--- 237 (467)
T 3dbg_A 171 LRGQYMD-----ERAERLCVALATVFRGMY---RRMVVPLGPLYRLP--LPANRRFNDALADLHLLVDEIIAERRAS--- 237 (467)
T ss_dssp SCSSCCH-----HHHHHHHHHHHHHHHC-----------------------------CCHHHHHHHHHHHHHHHTTC---
T ss_pred hCCcccc-----hhHHHHHHHHHHHHHHHH---HHhccchhhhhhCC--ChHhHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 9998861 123344444444443221 2233443 22221 2233456667778888899999988764
Q ss_pred CCCCCcHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 267 KTDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 267 ~~~~~dll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
+.+++|+++.|+++.++++ ..+|++++.+++.++++||+
T Consensus 238 ~~~~~dll~~ll~~~~~~~--~~ls~~ei~~~~~~l~~AG~ 276 (467)
T 3dbg_A 238 GQKPDDLLTALLEAKDDNG--DPIGEQEIHDQVVAILTPGS 276 (467)
T ss_dssp CSSCCSHHHHHTTC----------CHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHhhccCCC--CCCCHHHHHHHHHHHHHHhH
Confidence 2346799999998765432 25999999999999999985
No 22
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=99.96 E-value=7.4e-28 Score=221.31 Aligned_cols=237 Identities=16% Similarity=0.198 Sum_probs=171.8
Q ss_pred CCCCCCCCCCCCccccccc-CCCCCCchHHHHHHHHhhCCeEEEEe-CCcCEEEecCHHHHHHHHHhcCccCCCCCCccc
Q 021726 28 KSIALPPGPRGLPFIGNLH-QFDYSNPQNYFWRLSKQYGPMVSLRL-GSVPILVVSSAKMAEEVLKTHDLQFCSRPALLS 105 (308)
Q Consensus 28 ~~~~lpPGP~~~P~lGn~~-~~~~~~~~~~~~~~~~~YG~v~~~~~-g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~ 105 (308)
+..+.||||+++|++||+. .+ ..+++..+.++ ++||||+++++ |+.++|+|+||+++++||.++ .|++++....
T Consensus 23 ~~~~~~PGP~~~p~lG~~~~~~-~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~ 98 (436)
T 2cd8_A 23 RTQQGTTASPPVLDLGALGQDF-AADPYPTYARL-RAEGPAHRVRTPEGDEVWLVVGYDRARAVLADP--RFSKDWRNST 98 (436)
T ss_dssp -----------CCBHHHHHHHH-HHCCHHHHHHH-HTTCSEEEEECSSCCEEEEECSHHHHHHHHHCT--TEECCGGGCS
T ss_pred hhccCCCCCCccccCCCCCccc-ccChHHHHHHH-HHhCCeeeeccCCCCeEEEEcCHHHHHHHHcCC--CCcccccccc
Confidence 3446799999999999986 34 56789999999 89999999998 888999999999999999876 5887764211
Q ss_pred cccc---ccCCcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HHHHH
Q 021726 106 QQKV---SYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KSLTS 181 (308)
Q Consensus 106 ~~~~---~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~ 181 (308)
.... ...+.+++ ..+|+.|+++||++ ++.|+.++++++.+.+.++++.+++.|.+ ..++++|+.+.+ ..+++
T Consensus 99 ~~~~~~~~~~~~~l~-~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~--~~~~~vd~~~~~~~~~~~ 174 (436)
T 2cd8_A 99 TPLTEAEAALNHNML-ESDPPRHTRLRKLV-AREFTMRRVELLRPRVQEIVDGLVDAMLA--APDGRADLMESLAWPLPI 174 (436)
T ss_dssp SCCCTTGGGTCCSGG-GCCTTHHHHHHHHH-GGGSSHHHHHTTHHHHHHHHHHHHHHHHT--CTTSCEEHHHHTTTHHHH
T ss_pred ccccccccccccccc-ccCchHHHHHHHHh-HHhhCHHHHHHHHHHHHHHHHHHHHHHHh--ccCCCcchHHHHHHHHHH
Confidence 1110 11134444 45899999999997 89999999999999999999999999974 236689999977 57999
Q ss_pred HHHHHHHhCCcccccccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 021726 182 SITCRIGFGKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHL 261 (308)
Q Consensus 182 ~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 261 (308)
++|+. +||.+.+ ..+.+....+.++.. .+ . ++..++.+.+.+++.++|++++
T Consensus 175 ~vi~~-~~G~~~~-------~~~~~~~~~~~~~~~---------~~-------~----~~~~~~~~~~~~~~~~~i~~r~ 226 (436)
T 2cd8_A 175 TVISE-LLGVPEP-------DRAAFRVWTDAFVFP---------DD-------P----AQAQTAMAEMSGYLSRLIDSKR 226 (436)
T ss_dssp HHHHH-HHTCCGG-------GHHHHHHHHHHHHSC---------SS-------T----THHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-HhCCCHH-------HHHHHHHHHHHHhcc---------CC-------H----HHHHHHHHHHHHHHHHHHHHHh
Confidence 99998 6998765 223444443333320 00 1 2344566777888888999887
Q ss_pred CccCCCCCCCcHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 262 DPARIKTDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 262 ~~~~~~~~~~dll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
+. ..+|+++.|+++.++++ ..+|++++.+++.++++||+
T Consensus 227 ~~-----~~~d~l~~ll~~~~~~~--~~ls~~ei~~~~~~l~~AG~ 265 (436)
T 2cd8_A 227 GQ-----DGEDLLSALVRTSDEDG--SRLTSEELLGMAHILLVAGH 265 (436)
T ss_dssp TS-----CCCSHHHHHHHHHHHCT--TTSCHHHHHHHHHHHHHTTH
T ss_pred cC-----CCCCHHHHHHHhhhccC--CCCCHHHHHHHHHHHHHHhh
Confidence 53 24799999998765422 36999999999999999985
No 23
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=99.95 E-value=4.8e-28 Score=225.64 Aligned_cols=259 Identities=11% Similarity=0.102 Sum_probs=184.2
Q ss_pred ccCCCCCCCCCCCC-CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcC-ccCCCCCC
Q 021726 25 KTIKSIALPPGPRG-LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHD-LQFCSRPA 102 (308)
Q Consensus 25 ~~~~~~~lpPGP~~-~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~-~~f~~Rp~ 102 (308)
.+++..++||||++ +|++||++++ .++++..+.+|+++|||||++++|+.+++||+||+++++|+.++. ..|.+++.
T Consensus 7 ~~~~~~~~PPgp~~~lPliG~~~~~-~~~p~~~~~~l~~~yGpv~~~~lg~~~~vvv~~p~~v~~vl~~~~~~~~~~~~~ 85 (491)
T 3v8d_A 7 SRRRQTGEPPLENGLIPYLGCALQF-GANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHF 85 (491)
T ss_dssp CCCCCTTSCCEEEEEESSTTTTGGG-TCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHSCCTTEESSHHHH
T ss_pred hhccCCCCCCCCCCCcceeccHHHH-hcCHHHHHHHHHHHcCCceEEEECCEEEEEEcCHHHHHHHHhcCCccchHHHHH
Confidence 33455679999999 6999999998 789999999999999999999999999999999999999997654 23444432
Q ss_pred cccccccccCCcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcC---CCCcccHHHHHHHH
Q 021726 103 LLSQQKVSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAV---ASKPVNLSELMKSL 179 (308)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~---~~~~vd~~~~~~~~ 179 (308)
......+ +.+.....+|+.|+++||.+ .++|+.++++++.+.+.+++..+++.+..... ...++++.+.+..+
T Consensus 86 ~~~~~~~---g~~~~~~~~g~~~~~~Rr~~-~~~f~~~~l~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~l~~~~~~~ 161 (491)
T 3v8d_A 86 ALSAKAF---GHRSIDPMDGNTTENINDTF-IKTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRV 161 (491)
T ss_dssp HHHHHHH---TCCCCCGGGSSBCCCHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHSCCSSCGGGGCSCEEEEHHHHHHHH
T ss_pred HHHHHhc---CCcccccccchhHHHHHHHH-HHHcCccchHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCHHHHHHHH
Confidence 2222222 22333345799999999985 89999999999999999999999986532111 23468999999999
Q ss_pred HHHHHHHHHhCCcccccccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 021726 180 TSSITCRIGFGKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEE 259 (308)
Q Consensus 180 t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 259 (308)
++++++..+||.+... .+ .....+....+.+.. +.+.+|.+.+.. +.+..++..++.+.+.+.+.+.+++
T Consensus 162 ~~~~~~~~~fG~~~~~--~~-~~~~~~~~~~~~~~~------~~~~~~~l~~~~-p~~~~~~~~~a~~~l~~~~~~~~~~ 231 (491)
T 3v8d_A 162 MFEAGYLTIFGRDLTR--RD-TQKAHILNNLDNFKQ------FDKVFPALVAGL-PIHMFRTAHNAREKLAESLRHENLQ 231 (491)
T ss_dssp HHHHHHHHHHCBCCSC--GG-GHHHHHHHHHHHHHH------HHHHHHHHHTTC-CGGGCHHHHHHHHHHHHHTSHHHHT
T ss_pred HHHHHHHHHcCccccc--cc-hhhhhhHHHHHHHHH------HHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998762 11 122223333333322 223344433210 1222345556666666666555544
Q ss_pred hhCccCCCCCCCcHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 260 HLDPARIKTDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 260 ~~~~~~~~~~~~dll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
+++ +..|+++.++...++++ .++++++...++.+++||+
T Consensus 232 ~~~------~~~d~l~~l~~~~~~~~---~~~~~ei~~~~~~~~~ag~ 270 (491)
T 3v8d_A 232 KRE------SISELISLRMFLNDTLS---TFDDLEKAKTHLVVLWASQ 270 (491)
T ss_dssp TCB------SCCHHHHHHHHHHHHHB---CCCHHHHHHHHHHHHHHHH
T ss_pred ccc------cccHHHHHHHHHhhccC---CCchHHHHHHHHHHHHHhH
Confidence 332 35799999998765543 5999999999999999985
No 24
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=99.94 E-value=8.1e-26 Score=208.52 Aligned_cols=243 Identities=12% Similarity=0.170 Sum_probs=175.0
Q ss_pred CCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCccc-cc-ccc--cCCcceEeccCChhH
Q 021726 50 YSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLS-QQ-KVS--YNGLDVAFAPYNAYW 125 (308)
Q Consensus 50 ~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~-~~-~~~--~~~~~~~~~~~g~~W 125 (308)
++.+|..+.+|+++|||||++++|+.++|+|+||+++++||.++ .|..++.... .. ... ..+.++++..+|+.|
T Consensus 9 g~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~p~~~~~il~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~w 86 (456)
T 3mdm_A 9 GRVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMST--KYNKDSKMYRALQTVFGERLFGQGLVSECNYERW 86 (456)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTCT--TSCCCHHHHHHHHEETTEESSTTSTTTCCCHHHH
T ss_pred cchHHHHHHHHHHHhCCeEEEEeCCCCEEEECCHHHHHHHHhhc--cccccchhHHHHHHhhcccccCCCcccCCChHHH
Confidence 55789999999999999999999999999999999999999643 4555543211 11 111 113455555689999
Q ss_pred HHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHHHHhCCcccccccccchHHH
Q 021726 126 REIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFGKSYEVEDQGISERSR 205 (308)
Q Consensus 126 k~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~ 205 (308)
+++||++ ++.|+.++++++.+.+.++++.+++.|.+...+++++|+.+.+.++++|+|+.++||.+++..+.. ...
T Consensus 87 ~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~~---~~~ 162 (456)
T 3mdm_A 87 HKQRRVI-DLAFSRSSLVSLMETFNEKAEQLVEILEAKADGQTPVSMQDMLTYTAMDILAKAAFGMETSMLLGA---QKP 162 (456)
T ss_dssp HHHHHHH-GGGGSHHHHHTTHHHHHHHHHHHHHHHHHTCSSSSCEEHHHHHHHHHHHHHHHHHHSCCCCGGGTC---CHH
T ss_pred HHHHhhc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHHHHHHHHHHcCCChhhhccc---ccH
Confidence 9999996 899999999999999999999999999875556779999999999999999999999998742211 223
Q ss_pred HHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCC-CCCCcHHHHHHHhhhhc
Q 021726 206 FGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIK-TDQEDIVDVLLQIWKQR 284 (308)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~dll~~ll~~~~~~ 284 (308)
+...+..+...... ...|++.+++......+...+..+.+.+++.++++++++....+ ..+.|+++.++++.+
T Consensus 163 ~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~~~d~l~~ll~~~~-- 236 (456)
T 3mdm_A 163 LSQAVKLMLEGITA----SRNTLAKFLPGKRKQLREVRESIRFLRQVGRDWVQRRREALKRGEEVPADILTQILKAEE-- 236 (456)
T ss_dssp HHHHHHHHHHHHHH----HHHSCGGGCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHTS--
T ss_pred HHHHHHHHHHHHHH----HHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHhcC--
Confidence 33333333332111 01233333321111234455666777788888888877543222 235799999997642
Q ss_pred CCCCCCCHHHHHHHHHHHhhccC
Q 021726 285 GSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 285 ~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
..++++++.+++.++++||+
T Consensus 237 ---~~~~~~~l~~~~~~l~~AG~ 256 (456)
T 3mdm_A 237 ---GAQDDEGLLDNFVTFFIAGH 256 (456)
T ss_dssp ---SCSSSHHHHHHHHHHHHHTT
T ss_pred ---CCCCHHHHHHHHHHHHHHHH
Confidence 24889999999999999996
No 25
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=99.94 E-value=1.8e-25 Score=203.36 Aligned_cols=235 Identities=14% Similarity=0.165 Sum_probs=170.3
Q ss_pred CCCCCCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeC-CcCEEEecCHHHHHHHHHhcC-ccCCCCCCcccccc-
Q 021726 32 LPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG-SVPILVVSSAKMAEEVLKTHD-LQFCSRPALLSQQK- 108 (308)
Q Consensus 32 lpPGP~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g-~~~~vvi~~pe~ikevl~~~~-~~f~~Rp~~~~~~~- 108 (308)
+||||+++|++||+++ +|+..+.+|. +||||+++.++ +.+.+||++++.++++|.++. ..+.+||.......
T Consensus 2 ~pPGp~~~P~~g~~~~----~p~~~~~~l~-~~Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~~~~~~~~r~~~~~~~~~ 76 (404)
T 1jfb_A 2 MASGAPSFPFSRASGP----EPPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELSAS 76 (404)
T ss_dssp ----CCBSSCCCSSTT----SCCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCSHH
T ss_pred CCCCCCCCCCCCCcCC----CccHHHHHHH-HhCCeeeeecCCCCceEEEecHHHHHHHHcCCcccccccccCCcccccc
Confidence 5999999999999764 6888898886 69999999874 556777899999999998763 34556664432211
Q ss_pred ---cccCCcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHH
Q 021726 109 ---VSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITC 185 (308)
Q Consensus 109 ---~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~ 185 (308)
....+.++ +..+|+.|+++||++ ++.|+.++++++.+.+.++++++++.|.+....++++|+.+.+...+.++++
T Consensus 77 ~~~~~~~~~~l-~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~d~~~~~~~~~~~~i~ 154 (404)
T 1jfb_A 77 GKQAAKAKPTF-VDMDPPEHMHQRSMV-EPTFTPEAVKNLQPYIQRTVDDLLEQMKQKGCANGPVDLVKEFALPVPSYII 154 (404)
T ss_dssp HHHHTTSCCCG-GGCCTTHHHHHHTTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCEEHHHHTTTHHHHHHH
T ss_pred ccchhcccCcc-cccCchhHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHH
Confidence 01112333 445799999999996 8999999999999999999999999998644345789999999999999999
Q ss_pred HHHhCCcccccccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccC
Q 021726 186 RIGFGKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPAR 265 (308)
Q Consensus 186 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 265 (308)
..+||.+.+ .. ++.......+. .+. . ..++..++.+.+.+++.+++++++++
T Consensus 155 ~~~~G~~~~-------~~-~~~~~~~~~~~-----------~~~------~-~~~~~~~~~~~~~~~~~~~i~~r~~~-- 206 (404)
T 1jfb_A 155 YTLLGVPFN-------DL-EYLTQQNAIRT-----------NGS------S-TAREASAANQELLDYLAILVEQRLVE-- 206 (404)
T ss_dssp HHHHTCCGG-------GH-HHHHHHHHHHH-----------CTT------S-CHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHcCCCHH-------HH-HHHHHHHHHHh-----------ccC------c-chHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 999998765 11 22222111110 111 0 11345556777888888889888753
Q ss_pred CCCCCCcHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 266 IKTDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 266 ~~~~~~dll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
..+|+++.|+++..++ ..+|++++.+++.++++||+
T Consensus 207 ---~~~d~l~~ll~~~~~~---~~l~~~ei~~~~~~l~~AG~ 242 (404)
T 1jfb_A 207 ---PKDDIISKLCTEQVKP---GNIDKSDAVQIAFLLLVAGN 242 (404)
T ss_dssp ---CCSSHHHHHHHHTTTT---TSSCHHHHHHHHHHHHHHHH
T ss_pred ---CCCcHHHHHHHhhccC---CCCCHHHHHHHHHHHHHHhh
Confidence 2479999999654332 25999999999999999985
No 26
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=99.94 E-value=2.1e-25 Score=204.41 Aligned_cols=249 Identities=8% Similarity=0.023 Sum_probs=175.9
Q ss_pred CCCCCCCCCCCCCcccccccCCC---C-CCchHHHHHHHHhhCCeEEEEe-CCcCEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 27 IKSIALPPGPRGLPFIGNLHQFD---Y-SNPQNYFWRLSKQYGPMVSLRL-GSVPILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 27 ~~~~~lpPGP~~~P~lGn~~~~~---~-~~~~~~~~~~~~~YG~v~~~~~-g~~~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
+.++.+||| ++|++.... . .+++..+.++.+ ||||+++++ |+.+++||+++++++++|.++ +.|++||
T Consensus 2 ~~~~~~pp~-----~~g~l~~~~~~~~~~~p~~~~~~l~~-~gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~-~~fs~r~ 74 (428)
T 1cpt_A 2 DARATIPEH-----IARTVILPQGYADDEVIYPAFKWLRD-EQPLAMAHIEGYDPMWIATKHADVMQIGKQP-GLFSNAE 74 (428)
T ss_dssp CTTCCSCHH-----HHHHHHSSGGGGCHHHHHHHHHHHHH-HCSEEEECCTTSCCEEEECSHHHHHHHHHCT-TTEESSS
T ss_pred ccccccchh-----hhcccCChhhhcccCCccHHHHHHHH-hCCeeeccccCCCCeEEEccHHHHHHHHcCc-hhccCcc
Confidence 456789998 899876542 1 357888888875 799999998 789999999999999999654 5798887
Q ss_pred C-cccc---c-c-c---cc---C-CcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCC
Q 021726 102 A-LLSQ---Q-K-V---SY---N-GLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASK 168 (308)
Q Consensus 102 ~-~~~~---~-~-~---~~---~-~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~ 168 (308)
. .... . . + .+ . +.+++ ..+|+.|+++||++ ++.|+.++++++.+.++++++.+++.|.+ .+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-~~~g~~~~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~ 149 (428)
T 1cpt_A 75 GSEILYDQNNEAFMRSISGGCPHVIDSLT-SMDPPTHTAYRGLT-LNWFQPASIRKLEENIRRIAQASVQRLLD---FDG 149 (428)
T ss_dssp SCSSCCCHHHHHHHHHHTTTSSCSSCCGG-GCCTTHHHHHHHHH-HTTSSHHHHGGGHHHHHHHHHHHHHHHHT---SSS
T ss_pred ccccCCcccccchhccccccccccccccc-cCChHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHH---hCC
Confidence 5 3221 1 1 2 11 0 12444 45799999999997 89999999999999999999999999974 235
Q ss_pred cccHHHHH-HHHHHHHHHHHHhCCcccccccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHH
Q 021726 169 PVNLSELM-KSLTSSITCRIGFGKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFK 247 (308)
Q Consensus 169 ~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~ 247 (308)
++|+.+.+ ..+++++|+.+ ||.+.+ ..+.+.+..+.+..... .....+|++.++ .+.+.++..++.+
T Consensus 150 ~~d~~~~~~~~~~~~vi~~~-fG~~~~-------~~~~~~~~~~~~~~~~~--~~~~~~P~l~~~--~~~~~~~~~~~~~ 217 (428)
T 1cpt_A 150 ECDFMTDCALYYPLHVVMTA-LGVPED-------DEPLMLKLTQDFFGVHE--PDEQAVAAPRQS--ADEAARRFHETIA 217 (428)
T ss_dssp EEEHHHHTTTTHHHHHHHHH-HTCCGG-------GHHHHHHHHHTTTCC--------------------CHHHHHHHHHH
T ss_pred CeehHHHHHhhhHHHHHHHH-cCCCHh-------HHHHHHHHHHHHHhccc--cccccccccccc--chhhHHHHHHHHH
Confidence 79998655 57999999999 998775 22334433333322111 112235555432 1123356667788
Q ss_pred HHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 248 EFDAFHQELIEEHLDPARIKTDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 248 ~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
.+.+++.++|++++++ ..+|+++.|+++.+++ ..+|++++.+++.++++||+
T Consensus 218 ~~~~~~~~~i~~r~~~-----~~~dll~~ll~~~~~~---~~ls~~ei~~~~~~l~~AG~ 269 (428)
T 1cpt_A 218 TFYDYFNGFTVDRRSC-----PKDDVMSLLANSKLDG---NYIDDKYINAYYVAIATAGH 269 (428)
T ss_dssp HHHHHHHHHHHHHTTS-----CCSSHHHHHHHCBSSS---SBCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-----CCCcHHHHHHhccccC---CCCCHHHHHHHHHHHHHHHH
Confidence 8889999999998762 2479999999875432 36999999999999999985
No 27
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=99.93 E-value=1.6e-24 Score=197.28 Aligned_cols=230 Identities=11% Similarity=0.202 Sum_probs=170.5
Q ss_pred CCCCCCCCCCCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEE----e-CC-cCEEEecCHHHHHHHH-HhcCccCCC
Q 021726 27 IKSIALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLR----L-GS-VPILVVSSAKMAEEVL-KTHDLQFCS 99 (308)
Q Consensus 27 ~~~~~lpPGP~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~----~-g~-~~~vvi~~pe~ikevl-~~~~~~f~~ 99 (308)
+..+++||||+++|+. + ..+++..+.+| ++||||++++ + |+ .++|+|+||+++++|| .++ .|++
T Consensus 6 ~~~~~lppgp~~~p~~-----~-~~~p~~~~~~l-~~yGpv~~~~~~~~~~~~~~~~vvv~~~~~i~~vl~~~~--~~~~ 76 (406)
T 1ued_A 6 DQVAPLLREPANFQLR-----T-NCDPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHE--HFTT 76 (406)
T ss_dssp CSCCCEEECCTTTTCE-----E-TTEECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCS--SEEC
T ss_pred CCCCCCcccCcccCCC-----C-CCCcHHHHHHH-HHhCCeeeecccccCCCCCccEEEEcCHHHHHHHHhhCc--cccc
Confidence 3457899999999987 3 56789999999 9999999999 7 88 9999999999999999 443 3666
Q ss_pred CCCccccc-cccc---CCcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHH
Q 021726 100 RPALLSQQ-KVSY---NGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSEL 175 (308)
Q Consensus 100 Rp~~~~~~-~~~~---~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~ 175 (308)
++...... .+.. .+.++ +..+|+.|+++||++ ++.|+.++++++.+.+.++++++++.|.. .|+++|+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~l-~~~~g~~~~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~ 151 (406)
T 1ued_A 77 RPQFTQSKSGAHVEAQFVGQI-STYDPPEHTRLRKML-TPEFTVRRIRRMEPAIQSLIDDRLDLLEA---EGPSADLQGL 151 (406)
T ss_dssp CCCC---------CGGGTTCG-GGCCTTHHHHHHHHH-GGGSSHHHHHHHHHHHHHHHHHHHHHHHH---HCTTEEHHHH
T ss_pred ccccccccccccccccccccc-ccCCCHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCeeHHHH
Confidence 65421110 1110 12344 445899999999996 89999999999999999999999999973 2668999998
Q ss_pred HHH-HHHHHHHHHHhCCcccccccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHH
Q 021726 176 MKS-LTSSITCRIGFGKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQ 254 (308)
Q Consensus 176 ~~~-~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (308)
+.. +++++|+. +||.+.+ ..+.+......++. . . . . .++..++.+.+.+++.
T Consensus 152 ~~~~~~~~vi~~-~~G~~~~-------~~~~~~~~~~~~~~------~-----~---~---~--~~~~~~~~~~~~~~~~ 204 (406)
T 1ued_A 152 FADPVGAHALCE-LLGIPRD-------DQREFVRRIRRNAD------L-----S---R---G--LKARAADSAAFNRYLD 204 (406)
T ss_dssp THHHHHHHHHHH-HHTCCHH-------HHHHHHHHHHHCC-----------------C---C--HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHH-HcCCCHH-------HHHHHHHHHHHHHh------c-----c---C---C--HHHHHHHHHHHHHHHH
Confidence 875 99999995 7998654 22333333222211 0 0 0 1 1345566777888888
Q ss_pred HHHHHhhCccCCCCCCCcHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 255 ELIEEHLDPARIKTDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 255 ~~i~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
++++++++. ..+|+++.|+++. + ..+|++++.+++.++++||+
T Consensus 205 ~~i~~r~~~-----~~~d~l~~ll~~~-~----~~ls~~ei~~~~~~l~~AG~ 247 (406)
T 1ued_A 205 NLLARQRAD-----PDDGLLGMIVRDH-G----DNVTDEELKGLCTALILGGV 247 (406)
T ss_dssp HHHHHHHHS-----CCSSHHHHHHHHH-G----GGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-----CCCCHHHHHHHhc-C----CCCCHHHHHHHHHHHHHHhh
Confidence 899888752 2479999999865 2 25999999999999999985
No 28
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=99.92 E-value=2e-23 Score=190.45 Aligned_cols=232 Identities=14% Similarity=0.169 Sum_probs=170.4
Q ss_pred CCCCCCCCCcccccccCCCCCCchHHHHHHHHhh-CCeEEEEe-CCcCEEEecCHHHHHHHHHhcCccCCCCCCcccccc
Q 021726 31 ALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQY-GPMVSLRL-GSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQK 108 (308)
Q Consensus 31 ~lpPGP~~~P~lGn~~~~~~~~~~~~~~~~~~~Y-G~v~~~~~-g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~~ 108 (308)
..||||+++|.+.--..+ ..+++..+.+| ++| |||+++++ |+.++++|+||+++++||.++. |++++.......
T Consensus 5 ~~~~~~~~~P~~~~~~~~-~~~p~~~~~~l-~~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~ 80 (412)
T 2zbx_A 5 ATTPQTTDAPAFPSNRSC-PYQLPDGYAQL-RDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDPR--LSSNRTDDNFPA 80 (412)
T ss_dssp ---CCCCSSCBSSCCCSS-TTSCCHHHHHH-HHSSSSEEEEECTTSCEEEEECSHHHHHHHHTCTT--EECCTTSTTSCC
T ss_pred CCCCCCCCCCCCCCCchh-ccChHHHHHHH-HhcCCCeEeeccCCCCcEEEEecHHHHHHHHcCcc--cccCcccccccc
Confidence 468889889976333334 56899999999 788 99999998 8999999999999999998653 555543111111
Q ss_pred c-------ccCCcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHH-HHH
Q 021726 109 V-------SYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMK-SLT 180 (308)
Q Consensus 109 ~-------~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~-~~t 180 (308)
. ...+.++ +..+|+.|+++||++ ++.|+.++++++.+.+.++++.+++.|.. .|+++|+.+.+. .++
T Consensus 81 ~~~~~~~~~~~~~~l-~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~~~~~~~ 155 (412)
T 2zbx_A 81 TSPRFEAVRESPQAF-IGLDPPEHGTRRRMT-ISEFTVKRIKGMRPEVEEVVHGFLDEMLA---AGPTADLVSQFALPVP 155 (412)
T ss_dssp CSGGGC----CCCCG-GGCCTTHHHHHHTTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHH---HCSCEEHHHHTTTHHH
T ss_pred ccccccccccccccc-ccCCcHHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHHHHHH
Confidence 1 0012244 445899999999997 89999999999999999999999999973 256899998886 489
Q ss_pred HHHHHHHHhCCcccccccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHh
Q 021726 181 SSITCRIGFGKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEH 260 (308)
Q Consensus 181 ~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 260 (308)
+++++. +||.+.+ ..+.+......++.. . .. ++..++.+.+.+++.++|+++
T Consensus 156 ~~vi~~-~~G~~~~-------~~~~~~~~~~~~~~~---------~---------~~--~~~~~~~~~~~~~~~~~i~~r 207 (412)
T 2zbx_A 156 SMVICR-LLGVPYA-------DHEFFQDASKRLVQS---------T---------DA--QSALTARNDLAGYLDGLITQF 207 (412)
T ss_dssp HHHHHH-HHTCCGG-------GHHHHHHHHHHHHHC---------S---------SH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCHH-------HHHHHHHHHHHHhcc---------C---------cH--HHHHHHHHHHHHHHHHHHHHH
Confidence 999997 6998765 223344443333221 0 11 345556777788888899888
Q ss_pred hCccCCCCCCCcHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 261 LDPARIKTDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 261 ~~~~~~~~~~~dll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
++. ..+|+++.|+++.+++ ..+|++++.+++.++++||+
T Consensus 208 ~~~-----~~~d~l~~ll~~~~~~---~~ls~~ei~~~~~~~~~AG~ 246 (412)
T 2zbx_A 208 QTE-----PGAGLVGALVADQLAN---GEIDREELISTAMLLLIAGH 246 (412)
T ss_dssp HHS-----CCSSHHHHHHHTTTTT---TSSCHHHHHHHHHHHHHHHH
T ss_pred HhC-----CCCCHHHHHHHhcccC---CCCCHHHHHHHHHHHHHHHH
Confidence 753 2479999999875432 36999999999999999985
No 29
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=99.92 E-value=2.9e-25 Score=206.59 Aligned_cols=255 Identities=11% Similarity=0.126 Sum_probs=164.6
Q ss_pred CCCCCCCCCCC-CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcC-ccCCCCCCccc
Q 021726 28 KSIALPPGPRG-LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHD-LQFCSRPALLS 105 (308)
Q Consensus 28 ~~~~lpPGP~~-~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~-~~f~~Rp~~~~ 105 (308)
...+.||||++ +|++||++++ .++++..+.+|+++||+||++++|+.++|||+||+++++++.++. ..|..++.. .
T Consensus 10 ~~~~~pPgp~~~~P~iG~~~~~-~~~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dp~~~~~il~~~~~~~~~~~~~~-~ 87 (491)
T 3dax_A 10 RQTGEPPLENGLIPYLGCALQF-GANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFA-T 87 (491)
T ss_dssp CCTTCCCEEEEEESCTTTTGGG-TCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGTHHHHSCCTTEESSHHHHH-H
T ss_pred cCCCCCCcCCCcccchhhHHHH-hhCHHHHHHHHHHhcCCeEEEEECCeEEEEEcChHHHHHHHcCCccCChHHHHHH-H
Confidence 34568999988 8999999988 678999999999999999999999999999999999999997654 223322211 1
Q ss_pred ccccccCCcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhc---CCCCcccHHHHHHHHHHH
Q 021726 106 QQKVSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSA---VASKPVNLSELMKSLTSS 182 (308)
Q Consensus 106 ~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~---~~~~~vd~~~~~~~~t~~ 182 (308)
..... +.+.+...+|+.|+++||.+ .+.|+.+.++.+.+.+.+++..+++...... .....+++...+.+++++
T Consensus 88 ~~~~~--g~~~~~~~~g~~w~~~r~~~-~~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~ 164 (491)
T 3dax_A 88 SAKAF--GHRSIDPMDGNTTENINDTF-IKTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFE 164 (491)
T ss_dssp HHHHH--TCCCCCGGGTSBCCCHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHC----------CCEEEEHHHHHHHHHHH
T ss_pred HHHHc--CCCcccccchhHHHHHHHHH-HHhcCcccHHHHHHHHHHHHHHHHHhhccCCcCCCCceeccHHHHHHHHHHH
Confidence 11111 33433134689999999986 6789988898888888887777776543211 112357899999999999
Q ss_pred HHHHHHhCCcccccccccchHHHHHHHHHHHHhcccccccccccccccc-ccccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 021726 183 ITCRIGFGKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGW-VDNITGMIRRLERNFKEFDAFHQELIEEHL 261 (308)
Q Consensus 183 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 261 (308)
+++.++||.+... .+ .....+....+.+. .+.+++|++.. ++ ....++..+..+.+.+.+ ++++.
T Consensus 165 ~~~~~~fG~~~~~--~~-~~~~~~~~~~~~~~------~~~~~~p~l~~~lp--~~~~~~~~~~~~~~~~~~---~~~~~ 230 (491)
T 3dax_A 165 AGYLTIFGRDLTR--RD-TQKAHILNNLDNFK------QFDKVFPALVAGLP--IHMFRTAHNAREKLAESL---RHENL 230 (491)
T ss_dssp HHHHHHHCBCSTT--GG-GHHHHHHHHHHHHH------HHHHHHHHHHTTCC--GGGSHHHHHHHHHHHHHT---SHHHH
T ss_pred HhHHHHcCccccc--cc-chhhhhhHHHHHHH------HHHHHhHHHHHhCC--HhhhhHHHHHHHHHHHHH---HHHHh
Confidence 9999999987752 11 11111111111111 12234564432 21 111223333333333222 23333
Q ss_pred CccCCCCCCCcHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 262 DPARIKTDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 262 ~~~~~~~~~~dll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
++. ....|+++.+++..++.+ .++++++.+++.++++||+
T Consensus 231 ~~~---~~~~d~l~~ll~~~~~~~---~~~~~~i~~~~~~~~~ag~ 270 (491)
T 3dax_A 231 QKR---ESISELISLRMFLNDTLS---TFDDLEKAKTHLVVLWASQ 270 (491)
T ss_dssp TTC---BSCCHHHHHHHHHHHHHB---CCCHHHHHHHHHHHHHHHH
T ss_pred hcc---cchhHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHhc
Confidence 321 235799999997654432 4899999999999999985
No 30
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=99.91 E-value=1.4e-23 Score=191.59 Aligned_cols=235 Identities=13% Similarity=0.082 Sum_probs=170.0
Q ss_pred ccCCCCCCCCCCCCCccc--ccccCCC----CCCchHHHHHHHHhhC--CeEEEE-eCCcCEEEecCHHHHHHHHHhcCc
Q 021726 25 KTIKSIALPPGPRGLPFI--GNLHQFD----YSNPQNYFWRLSKQYG--PMVSLR-LGSVPILVVSSAKMAEEVLKTHDL 95 (308)
Q Consensus 25 ~~~~~~~lpPGP~~~P~l--Gn~~~~~----~~~~~~~~~~~~~~YG--~v~~~~-~g~~~~vvi~~pe~ikevl~~~~~ 95 (308)
.++++.++||||++.|.. +.+..+. ..+++..+.+|. +|| ||++++ +| ++++|+|++++++||.+ .+
T Consensus 5 ~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l~-~~G~~pv~~~~~~g--~~vvv~~~~~v~~vl~~-~~ 80 (415)
T 2zwu_A 5 TIQSNANLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQ-ESNVPDLVWTRCNG--GHWIATRGQLIREAYED-YR 80 (415)
T ss_dssp ------CCCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHHGGG-STTSCSEEEECGGG--CEEEECSHHHHHHHHHC-TT
T ss_pred cccCccccCCCCCCCCcccccccCcCChhhcccChHHHHHHHH-hcCCCCeEEecCCC--CeEEEcCHHHHHHHHcC-cc
Confidence 345678899999999975 5432221 346889999995 899 999999 77 79999999999999964 45
Q ss_pred cCCCCC-CcccccccccCCcc-eEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHH
Q 021726 96 QFCSRP-ALLSQQKVSYNGLD-VAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLS 173 (308)
Q Consensus 96 ~f~~Rp-~~~~~~~~~~~~~~-~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~ 173 (308)
.|++++ ......... +.+ ++ ..+|+.|+++||++ ++.|+.++++++.+.+.++++.+++.|.+ +.++|+.
T Consensus 81 ~f~~~~~~~~~~~~~~--~~~~l~-~~~g~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~ 152 (415)
T 2zwu_A 81 HFSSECPFIPREAGEA--YDFIPT-SMDPPEQRQFRALA-NQVVGMPVVDKLENRIQELACSLIESLRP----QGQCNFT 152 (415)
T ss_dssp TEETTSCSSSHHHHHH--CCCTTT-TCCTTTTHHHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHHHHGG----GTEEEHH
T ss_pred ccCCCcccCCCCcccc--ccccCc-cCCCcHHHHHHHHH-HhhhCHHHHHHHHHHHHHHHHHHHHHHHh----cCCccHH
Confidence 788887 222111111 334 44 44799999999997 89999999999999999999999999974 2379999
Q ss_pred HHH-HHHHHHHHHHHHhCCcccccccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHH
Q 021726 174 ELM-KSLTSSITCRIGFGKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAF 252 (308)
Q Consensus 174 ~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~ 252 (308)
+.+ ..+++++|+.+ ||.+.+ ..+.+.+....++... .|. +..++.+.+.++
T Consensus 153 ~~~~~~~~~~vi~~~-~G~~~~-------~~~~~~~~~~~~~~~~--------~P~------------~~~~~~~~~~~~ 204 (415)
T 2zwu_A 153 EDYAEPFPIRIFMLL-AGLPEE-------DIPHLKYLTDQMTRPD--------GSM------------TFAEAKEALYDY 204 (415)
T ss_dssp HHTTTHHHHHHHHHH-HTCCGG-------GHHHHHHHHHHHHSCC--------SSS------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-cCCCHH-------HHHHHHHHHHHHHhcc--------CHH------------HHHHHHHHHHHH
Confidence 765 78999999999 999876 2234444444433210 122 223455667778
Q ss_pred HHHHHHHhhCccCCCCCCCcHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 253 HQELIEEHLDPARIKTDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 253 ~~~~i~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
+.++|+++++. ..+|+++.|+++..++ ..+|++++.+.+.++++||+
T Consensus 205 ~~~~i~~r~~~-----~~~dll~~ll~~~~~~---~~l~~~~i~~~~~~l~~AG~ 251 (415)
T 2zwu_A 205 LIPIIEQRRQK-----PGTDAISIVANGQVNG---RPITSDEAKRMCGLLLVGGL 251 (415)
T ss_dssp HHHHHHHHHHS-----CCSSHHHHHHTCEETT---EECCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-----CCCCHHHHHHHhhhcC---CCCCHHHHHHHHHHHHHHhH
Confidence 88888888752 2479999999765432 25999999999999999985
No 31
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=99.91 E-value=4.5e-23 Score=188.22 Aligned_cols=234 Identities=12% Similarity=0.098 Sum_probs=167.6
Q ss_pred CCcccccccCCCCCCchHHHHHHHHhhC-CeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcc--cccccccCCc
Q 021726 38 GLPFIGNLHQFDYSNPQNYFWRLSKQYG-PMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALL--SQQKVSYNGL 114 (308)
Q Consensus 38 ~~P~lGn~~~~~~~~~~~~~~~~~~~YG-~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~--~~~~~~~~~~ 114 (308)
+.|++||++++ ..+++..+.++.++|| ||+++++++.++|++++|++++.++ + .+.|+.++... ....+. |.
T Consensus 7 g~P~lG~~~~~-~~~p~~~~~~l~~~yg~pv~~~~~~g~~~v~v~~~~~~~~l~-~-~~~~~~~~~~~~~~~~~~~--g~ 81 (417)
T 1izo_A 7 HDKSLDNSLTL-LKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFY-D-TDRFQRQNALPKRVQKSLF--GV 81 (417)
T ss_dssp BCCCTTHHHHH-HHHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHT-C-TTTEECTTCSCHHHHTTTT--CT
T ss_pred CCCccchHHHH-hhCcHHHHHHHHHHhCCCeEEeecCCccEEEECCHHHHHHHh-c-ccccccccccccchhhhhc--cc
Confidence 34999999887 6689999999999998 8999999999999999999998543 3 34566543321 111122 22
Q ss_pred ceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHHHHhCCccc
Q 021726 115 DVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFGKSYE 194 (308)
Q Consensus 115 ~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~ 194 (308)
+.++..+|+.|+++||++ +++|+.++++++.+.+.+.++.+++.|.+ ++++|+.+.+.++++++|+++ +|.+.+
T Consensus 82 ~~l~~~dg~~h~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~----~~~~dl~~~~~~~~~~vi~~~-~G~~~~ 155 (417)
T 1izo_A 82 NAIQGMDGSAHIHRKMLF-LSLMTPPHQKRLAELMTEEWKAAVTRWEK----ADEVVLFEEAKEILCRVACYW-AGVPLK 155 (417)
T ss_dssp TCGGGCCHHHHHHHHHHH-HHTSSHHHHHHHHHHHHHHHHHHHHHHTT----SSEEEHHHHHHHHHHHHHHHH-HTCCCC
T ss_pred cceeecCChHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHhc----CCCeeHHHHHHHHHHHHHHHH-cCCCCC
Confidence 234456899999999996 89999999999999999999999999963 568999999999999999998 698876
Q ss_pred ccccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHH
Q 021726 195 VEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIV 274 (308)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll 274 (308)
+. ....+.+.+..++.... .+ .+ ..++..++.+.+.+++.++|+++++... ....+|++
T Consensus 156 --~~---~~~~~~~~~~~~~~~~~---------~~-----~~-~~~~~~~~~~~~~~~~~~~i~~r~~~~~-~~~~~d~l 214 (417)
T 1izo_A 156 --ET---EVKERADDFIDMVDAFG---------AV-----GP-RHWKGRRARPRAEEWIEVMIEDARAGLL-KTTSGTAL 214 (417)
T ss_dssp --TT---THHHHHHHHHHHHHHTT---------CC-----SH-HHHHHHHHHHHHHHHHHHHHHHHHTTSS-CCCTTSHH
T ss_pred --ch---HHHHHHHHHHHHHhhcc---------cC-----Cc-cchhHHHHHHHHHHHHHHHHHHHHhhcc-CCCcCCHH
Confidence 21 12223222222222110 00 01 1234556777888899999999887531 12357999
Q ss_pred HHHHHhhhhcCCCCCCCHHHHHHHHHHHhhcc
Q 021726 275 DVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQ 306 (308)
Q Consensus 275 ~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~ 306 (308)
+.|++..++++ ..++++++..++..++ ||
T Consensus 215 ~~ll~~~~~~g--~~l~~~~~~~~~~~~~-ag 243 (417)
T 1izo_A 215 HEMAFHTQEDG--SQLDSRMAAIELINVL-RP 243 (417)
T ss_dssp HHHHHCBCTTS--CBCCHHHHHHHHHHHH-HH
T ss_pred HHHHHhccccC--CCCCHHHHHHHHHHHH-hh
Confidence 99998754322 3689998888877665 55
No 32
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=99.91 E-value=2.7e-23 Score=189.60 Aligned_cols=236 Identities=13% Similarity=0.084 Sum_probs=166.5
Q ss_pred CCCCCCCcccccccCCCCCCchHHHHHHHHhh-CCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcc--ccccc
Q 021726 33 PPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQY-GPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALL--SQQKV 109 (308)
Q Consensus 33 pPGP~~~P~lGn~~~~~~~~~~~~~~~~~~~Y-G~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~--~~~~~ 109 (308)
|||| |++||++++ ..+++..+.++.++| |||+++.+++.+++++++|++++ ++.+. +.|+.++... ....+
T Consensus 4 pPg~---P~iG~~~~~-~~~p~~~~~~l~~~y~gpv~~~~~~g~~~~vv~~~~~~~-~l~~~-~~f~~~~~~~~~~~~~~ 77 (415)
T 3awm_A 4 TPHT---KGPDETLSL-LADPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAE-IFYDT-TRFEREGAMPVAIQKTL 77 (415)
T ss_dssp --------CCCCHHHH-HHSTTTHHHHHHHHHTSSEEEEEETTEEEEEEESHHHHH-HHTCT-TTEECTTCSCHHHHTTT
T ss_pred CCCC---CccchHHHH-HhChHHHHHHHHHHhCCCeEEEecCCCcEEEEeCHHHHH-HHhcc-cccccccccchhhhhhc
Confidence 6776 899999887 668999999999999 79999999988999999999986 66543 4676554322 11112
Q ss_pred ccCCcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHHHHh
Q 021726 110 SYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGF 189 (308)
Q Consensus 110 ~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~f 189 (308)
. +.+.++..+|+.|+++||++ ++.|+.++++++.+.+.+.++++++.|.. +.++|+.+.+..+++++++++ |
T Consensus 78 ~--g~~~l~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~~~~----~~~vdl~~~~~~~~~~vi~~~-~ 149 (415)
T 3awm_A 78 L--GQGGVQGLDGETHRHRKQMF-MGLMTPERVRALAQLFEAEWRRAVPGWTR----KGEIVFYDELHEPLTRAVCAW-A 149 (415)
T ss_dssp S--CSSSGGGCCHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHHHHHHH----HSEEEHHHHHHHHHHHHHHHH-H
T ss_pred c--CCcceeecCcHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHhhcc----CCcEeHHHHHHHHHHHHHHHH-c
Confidence 2 22223456899999999996 89999999999999999999999999974 457999999999999999999 8
Q ss_pred CCcccccccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCC
Q 021726 190 GKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTD 269 (308)
Q Consensus 190 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 269 (308)
|.+.+ +. ....+...+..++.. ++.+ .+..++..++.+.+.+++.++|++++++.. ...
T Consensus 150 G~~~~--~~---~~~~~~~~~~~~~~~---------~~~~------~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~-~~~ 208 (415)
T 3awm_A 150 GVPLP--DD---EAGNRAGELRALFDA---------AGSA------SPRHLWSRLARRRVDAWAKRIIEGIRAGSI-GSG 208 (415)
T ss_dssp TCCCC--GG---GHHHHHHHHHHHHHS---------TTCS------SHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-CCC
T ss_pred CCCCC--cc---hHHHHHHHHHHHHHH---------hccc------CchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCC
Confidence 98776 21 122222222222221 1111 112234556777888889999998876421 123
Q ss_pred CCcHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhcc
Q 021726 270 QEDIVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQ 306 (308)
Q Consensus 270 ~~dll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~ 306 (308)
.+|+++.|+++.++++ ..++++++...+..++ ||
T Consensus 209 ~~d~l~~ll~~~~~~g--~~~~~~~~~~~~~~~~-ag 242 (415)
T 3awm_A 209 SGTAAYAIAWHRDRHD--DLLSPHVAAVELVNVL-RP 242 (415)
T ss_dssp TTSHHHHHHHCBCTTS--CBCCHHHHHHHHHHHH-HH
T ss_pred CCCHHHHHHhhhhccC--CCCCHHHHHHHHHHHH-Hh
Confidence 5799999998654322 3689998888877665 55
No 33
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=99.91 E-value=9.7e-25 Score=197.60 Aligned_cols=221 Identities=13% Similarity=0.145 Sum_probs=159.4
Q ss_pred CCCCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCC-CcccccccccC
Q 021726 34 PGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRP-ALLSQQKVSYN 112 (308)
Q Consensus 34 PGP~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp-~~~~~~~~~~~ 112 (308)
+++..+|++||++++ ..+++..+.+|+++||||++ ++|+.++++|+||+++++|+.++ .|++++ .......+.
T Consensus 2 ~~~~~~p~iGnl~~~-~~~p~~~~~~l~~~yGpv~~-~~g~~~~vvv~~~~~i~~il~~~--~f~~~~~~~~~~~~~~-- 75 (389)
T 1n97_A 2 KRLSLREAWPYLKDL-QQDPLAVLLAWGRAHPRLFL-PLPRFPLALIFDPEGVEGALLAE--GTTKATFQYRALSRLT-- 75 (389)
T ss_dssp EECCHHHHHHHHHHH-HHCHHHHHHHHHHHCSEEEE-CCTTCCEEEECSHHHHHHHHHCT--TEECCSHHHHHHHHHH--
T ss_pred cccccccccccHHHH-hhChHHHHHHHHHHcCCeeE-ecCCccEEEECCHHHHHHHHhcC--CCCCChhHHHHHHHHh--
Confidence 356679999999987 56789999999999999999 99999999999999999999876 788776 221222222
Q ss_pred CcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHHHHhCCc
Q 021726 113 GLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFGKS 192 (308)
Q Consensus 113 ~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~ 192 (308)
+.+++ ..+|+.|+++||++ ++.|+.++++++.+.+.++++.+++.|. ++++|+.+.+.++++++++.++||.+
T Consensus 76 g~~l~-~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~-----~~~~dl~~~~~~~~~~vi~~~~fG~~ 148 (389)
T 1n97_A 76 GRGLL-TDWGESWKEARKAL-KDPFLPKNVRGYREAMEEEARAFFGEWR-----GEERDLDHEMLALSLRLLGRALFGKP 148 (389)
T ss_dssp CSSTT-TCCHHHHHHHHHHH-CGGGSHHHHHTTHHHHHHHHHHHHHTCC-----SCCEEHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCccc-cCCcHHHHHHHHHh-CcccCHHHHHHHHHHHHHHHHHHHHHcc-----CCcCcHHHHHHHHHHHHHHHHHcCCc
Confidence 34444 44799999999997 8999999999999999999999999885 56899999999999999999999998
Q ss_pred ccccccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCc
Q 021726 193 YEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQED 272 (308)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d 272 (308)
++ + .+.+....+...... .. ++++.+++ ....++..++.+.+.+++.++++++
T Consensus 149 ~~--~-------~~~~~~~~~~~~~~~-~~---~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~i~~r------------ 201 (389)
T 1n97_A 149 LS--P-------SLAEHALKALDRIMA-QT---RSPLALLD--LAAEARFRKDRGALYREAEALIVHP------------ 201 (389)
T ss_dssp CC--H-------HHHHHHHHHHHHHHH-HH---HCGGGGGC--HHHHHHHHHHHHHHHHHHGGGTTST------------
T ss_pred ch--H-------HHHHHHHHHHHHHHH-HH---hhHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHH------------
Confidence 76 1 233333333332211 11 11222221 1122334444444444433322211
Q ss_pred HHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 273 IVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 273 ll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
++ + .+|++++.+++.++++||+
T Consensus 202 ----ll-----~----~l~~~~l~~~~~~~~~aG~ 223 (389)
T 1n97_A 202 ----PL-----S----HLPRERALSEAVTLLVAGH 223 (389)
T ss_dssp ----TG-----G----GSCHHHHHHHHHHHHHHHS
T ss_pred ----hc-----c----cCCHHHHHHHHHHHHHcCc
Confidence 22 1 3899999999999999986
No 34
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=99.91 E-value=8.4e-23 Score=185.89 Aligned_cols=229 Identities=17% Similarity=0.184 Sum_probs=168.8
Q ss_pred CCCCCCCCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEe-CCcC-EEEecCHHHHHHHHHhcCccCCCCCCccccc
Q 021726 30 IALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRL-GSVP-ILVVSSAKMAEEVLKTHDLQFCSRPALLSQQ 107 (308)
Q Consensus 30 ~~lpPGP~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~-g~~~-~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~ 107 (308)
.+.+|||+++|+.++ . ..+|+..+.++. +||||+++++ |+.+ +++|+||+++++||.+ ..|++++......
T Consensus 7 ~~~~~~~~~~p~~~~---~-~~~p~~~~~~l~-~~Gpv~~~~~~~g~~p~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~ 79 (406)
T 1s1f_A 7 SQAVPPVRDWPAVDL---P-GSDFDPVLTELM-REGPVTRISLPNGEGWAWLVTRHDDVRLVTND--PRFGREAVMDRQV 79 (406)
T ss_dssp -CCSCCEEECCCCCC---C-TTCCCHHHHHHH-HHCSEEEEECSBSBSCEEEECSHHHHHHHHTC--TTEESTTTTTTTB
T ss_pred hhhccCCCCCCCCcc---c-ccCchHHHHHHH-hcCCeeeeccCCCcccEEEEcCHHHHHHHHcC--CCccCCcCCCCCc
Confidence 367889988999887 2 568999998885 7999999996 6665 9999999999999986 3688776432111
Q ss_pred ----c-cccCCcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HHHHH
Q 021726 108 ----K-VSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KSLTS 181 (308)
Q Consensus 108 ----~-~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~ 181 (308)
. ....+.++++ .+|+.|+++||++ ++.|+.++++++.+.+.++++.+++.|.+ .++++|+.+.+ ..+++
T Consensus 80 ~~~~~~~~~~~~~l~~-~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~~d~~~~~~~~~~~ 154 (406)
T 1s1f_A 80 TRLAPHFIPARGAVGF-LDPPDHTRLRRSV-AAAFTARGVERVRERSRGMLDELVDAMLR---AGPPADLTEAVLSPFPI 154 (406)
T ss_dssp CBSSSSCSSCTTSGGG-CCTTHHHHHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHHHHHH---HCSSEEHHHHTTTHHHH
T ss_pred cccccccccccccccc-CCchHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHhhHhHH
Confidence 1 1111345544 5799999999997 88999999999999999999999999973 25689998776 47999
Q ss_pred HHHHHHHhCCcccccccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 021726 182 SITCRIGFGKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHL 261 (308)
Q Consensus 182 ~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 261 (308)
++|+. +||.+.+ ..+.+......++.... | .+ +..++.+.+.+++.++|++++
T Consensus 155 ~vi~~-~~G~~~~-------~~~~~~~~~~~~~~~~~--------~-~~----------~~~~~~~~~~~~~~~~i~~r~ 207 (406)
T 1s1f_A 155 AVICE-LMGVPAT-------DRHSMHTWTQLILSSSH--------G-AE----------VSERAKNEMNAYFSDLIGLRS 207 (406)
T ss_dssp HHHHH-HHTCCGG-------GHHHHHHHHHHHHHHHT--------T-CC----------CCHHHHTHHHHHHHHHHHTSC
T ss_pred HHHHH-HhCCCHH-------HHHHHHHHHHHHHhccC--------C-HH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 99999 5998765 22334444333332111 1 01 122345566777888888876
Q ss_pred CccCCCCCCCcHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhcc
Q 021726 262 DPARIKTDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQ 306 (308)
Q Consensus 262 ~~~~~~~~~~dll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~ 306 (308)
+. ..+|+++.|+++.++ ..+|++++.+++.++++||
T Consensus 208 ~~-----~~~d~l~~ll~~~~~----~~ls~~el~~~~~~l~~AG 243 (406)
T 1s1f_A 208 DS-----AGEDVTSLLGAAVGR----DEITLSEAVGLAVLLQIGG 243 (406)
T ss_dssp CS-----CCCSHHHHHHHHHHT----TSSCHHHHHHHHHHHHHHT
T ss_pred hC-----CCCCHHHHHHHhhcc----cCCCHHHHHHHHHHHHHhh
Confidence 53 246999999987543 2599999999999999998
No 35
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=99.90 E-value=5.8e-23 Score=188.51 Aligned_cols=237 Identities=14% Similarity=0.121 Sum_probs=166.9
Q ss_pred CCCCCCCCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEE--------eCCcCEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 30 IALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLR--------LGSVPILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 30 ~~lpPGP~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~--------~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
...||+|.++++++.-... ..+|+..+.++ ++||||+++. +|+.++++|++++.+++||.+ ...|++++
T Consensus 17 ~~~p~~~~~~~~~~~~~~~-~~~p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~~~~~vv~~~~~v~~vl~~-~~~fs~~~ 93 (433)
T 3ivy_A 17 VPSPNLPPGFDFTDPAIYA-ERLPVAEFAEL-RSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISRH-SDVFSSYE 93 (433)
T ss_dssp ---CCCCTTCCTTCHHHHT-TCCCHHHHHHH-HHHCSEEEEECCTTCSTTCCSSEEEEECSHHHHHHHHHC-TTTEESTT
T ss_pred cCCCCCCCCCCCCCHHHhh-cCCccHHHHHH-HhcCCEEecccccccccccCCCCEEEEecHHHHHHHHcC-hhhccCCc
Confidence 3567788778877754432 45799999999 7899999999 666899999999999999964 46788887
Q ss_pred Cccccc--------ccccCCcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHH
Q 021726 102 ALLSQQ--------KVSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLS 173 (308)
Q Consensus 102 ~~~~~~--------~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~ 173 (308)
...... .....+.++ +..+|+.|+++||++ ++.|+.+.++++.+.+.++++.+++.|.. +.++|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l-~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~d~~ 167 (433)
T 3ivy_A 94 NGVIPRFKNDIAREDIEVQRFVM-LNMDAPHHTRLRKII-SRGFTPRAVGRLHDELQERAQKIAAEAAA----AGSGDFV 167 (433)
T ss_dssp TCSCCCCCTTCCHHHHHGGGGSG-GGCCTTHHHHHHHHH-GGGSCHHHHHTTHHHHHHHHHHHHHHHHH----HCEEEHH
T ss_pred ccccccccccccccccccccCCc-cccChHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHhh----CCCeeHH
Confidence 543221 111113344 456899999999997 89999999999999999999999999973 4579998
Q ss_pred HHH-HHHHHHHHHHHHhCCcccccccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHH
Q 021726 174 ELM-KSLTSSITCRIGFGKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAF 252 (308)
Q Consensus 174 ~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~ 252 (308)
+.+ ..+++++|+++ ||.+.+ ..+.+.+..+. ... ...|.+.. .+..++.+.+.++
T Consensus 168 ~~~~~~~~~~vi~~l-~G~~~~-------~~~~~~~~~~~---~~~-----~~~p~~~~--------~~~~~~~~~~~~~ 223 (433)
T 3ivy_A 168 EQVSCELPLQAIAGL-LGVPQE-------DRGKLFHWSNE---MTG-----NEDPEYAH--------IDPKASSAELIGY 223 (433)
T ss_dssp HHTTSHHHHHHHHHH-HTCCHH-------HHHHHHHHHTT---CSC-----CCCGGGTT--------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-cCCCHH-------HHHHHHHHHHH---Hhc-----cCCchhhh--------HHHHHHHHHHHHH
Confidence 887 99999999996 896433 22222222111 111 11233221 0234556677788
Q ss_pred HHHHHHHhhCccCCCCCCCcHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 253 HQELIEEHLDPARIKTDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 253 ~~~~i~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
+.++++++++. ..+|+++.|+++.+++ ..+|++++..++.++++||+
T Consensus 224 ~~~~i~~r~~~-----~~~dll~~ll~~~~~~---~~ls~~ei~~~~~~ll~AG~ 270 (433)
T 3ivy_A 224 AMKMAEEKAKN-----PADDIVTQLIQADIDG---EKLSDDEFGFFVVMLAVAGN 270 (433)
T ss_dssp HHHHHHHC------------CHHHHHSCC--C---CCCCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhcC-----CCCcHHHHHHhhhcCC---CCCCHHHHHHHHHHHHHhhh
Confidence 88888887652 2579999999876543 26999999999999999996
No 36
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=99.90 E-value=1.7e-23 Score=195.17 Aligned_cols=258 Identities=9% Similarity=0.087 Sum_probs=163.4
Q ss_pred CCCCCCCCCCCC-CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcc-
Q 021726 27 IKSIALPPGPRG-LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALL- 104 (308)
Q Consensus 27 ~~~~~lpPGP~~-~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~- 104 (308)
++..++||||++ +|++||++++ .++++..+.+|+++|||||++++|+.++|||+||+++++++.++...++.++...
T Consensus 14 ~~~~~~PPgp~~~~P~iG~~~~~-~~~~~~~~~~l~~kYG~i~~v~lg~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~ 92 (498)
T 3b6h_A 14 TRRPGEPPLDLGSIPWLGYALDF-GKDAASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFHAYAIF 92 (498)
T ss_dssp CCCTTCCCEECCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHTCCTTTEECCHHHHH
T ss_pred ccCCCCCCCCCCCCcchhhHHHh-ccCHHHHHHHHHHHcCCeEEEEECCeeEEEEcCHHHHHHHHhCccccCCchhhHHH
Confidence 345578999998 8999999988 5678999999999999999999999999999999999999977654344443221
Q ss_pred cccccccCCcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhc-CCCCcccHHHHHHHHHHHH
Q 021726 105 SQQKVSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSA-VASKPVNLSELMKSLTSSI 183 (308)
Q Consensus 105 ~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~-~~~~~vd~~~~~~~~t~~v 183 (308)
...... |.+.+ ..+|+.|+ |++ .+.|+.+.++.+.+.+.+++...++...... .....+++...+..+++++
T Consensus 93 ~~~~~~--g~~~~-~~~~~~~r---r~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vi~~~ 165 (498)
T 3b6h_A 93 LMERIF--DVQLP-HYSPSDEK---ARM-KLTLLHRELQALTEAMYTNLHAVLLGDATEAGSGWHEMGLLDFSYSFLLRA 165 (498)
T ss_dssp HHHHTS--CCCCT-TCCHHHHH---HHH-HTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEHHHHHHHHHHHH
T ss_pred HHHHHc--CCCcc-ccCHHHHH---HHH-HHhhchHhHHHHHHHHHHHHHHHHhhcccccCCCcceecHHHHHHHHHHHH
Confidence 111111 33433 34677774 443 5678888888888777777777766553211 1223578999999999999
Q ss_pred HHHHHhCCcccccccccchHHHHHHHHHHHHhccccccccccccccccccccc-hHHHHHHHHHHHHHHHHHHHHHHhhC
Q 021726 184 TCRIGFGKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNIT-GMIRRLERNFKEFDAFHQELIEEHLD 262 (308)
Q Consensus 184 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~ 262 (308)
++..+||.+++.++.. ........+..+..... .+.+.+|++... +++ ...++..++.+.+.+ .+++++++
T Consensus 166 ~~~~~fG~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~p~l~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 237 (498)
T 3b6h_A 166 GYLTLYGIEALPRTHE--SQAQDRVHSADVFHTFR--QLDRLLPKLARG-SLSVGDKDHMCSVKSRLWK---LLSPARLA 237 (498)
T ss_dssp HHHHHHCBSCSSCCHH--HHHHHHHHHHHHHHHHH--HHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHH---HTCHHHHT
T ss_pred HHHhhcCccccccccc--chhhHHHhhHHHHHHHH--HHHhhHHHHHHH-hcCchhhHHHHHHHHHHHH---HHHHHHHh
Confidence 9999999987521110 11112222233332211 123456654321 112 112233333333332 22333333
Q ss_pred ccCCCCCCCcHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 263 PARIKTDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 263 ~~~~~~~~~dll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
+ .....|+++.+++..++++ .++++++. .++++++||+
T Consensus 238 ~---~~~~~d~l~~ll~~~~~~~---~~~~~~~~-~~~~~l~ag~ 275 (498)
T 3b6h_A 238 R---RAHRSKWLESYLLHLEEMG---VSEEMQAR-ALVLQLWATQ 275 (498)
T ss_dssp T---CBSCCHHHHHHHHHHHHTT---CCHHHHHH-HHHHHHHHHH
T ss_pred c---cccHHHHHHHHHHHHHhCC---CCHHHHHH-HHHHHHHHhh
Confidence 2 1235799999998765433 47888888 7777777874
No 37
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=99.90 E-value=2.3e-22 Score=181.65 Aligned_cols=214 Identities=11% Similarity=0.138 Sum_probs=162.9
Q ss_pred CCCchHHHHHHHHhhCCeEEEEeCC----cCEEEecCHHHHHHHHHhcCccCCCCCCcccccccccCCcceEeccCChhH
Q 021726 50 YSNPQNYFWRLSKQYGPMVSLRLGS----VPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYW 125 (308)
Q Consensus 50 ~~~~~~~~~~~~~~YG~v~~~~~g~----~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~W 125 (308)
..+|+..+.+| ++||||+++++|+ .++|+|+||+++++|+ ++...|++|+......... ...+.++..+|+.|
T Consensus 11 ~~~p~~~~~~l-r~yGpv~~~~~~~~~~g~~~vvv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~g~~~ 87 (384)
T 3oo3_A 11 RLDPVPEFEEL-QKAGPLHEYDTEPGMDGRKQWLVTGHDEVRAIL-ADHERFSSMRPVDDEADRA-LLPGILQAYDPPDH 87 (384)
T ss_dssp TTEECHHHHHH-HHTCSEECCCCC------CEEEECCHHHHHHHH-HCTTTEECSCCCC-----C-CCTTCGGGCCTTHH
T ss_pred ccChhHHHHHH-HhcCCeeecccccccCCCCEEEEcCHHHHHHHH-hCchhccCCcccccccccc-ccccccccCCChhH
Confidence 56899999999 5999999999987 8999999999999999 5557899887644222111 12234556689999
Q ss_pred HHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHHHHhCCcccccccccchHHH
Q 021726 126 REIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFGKSYEVEDQGISERSR 205 (308)
Q Consensus 126 k~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~ 205 (308)
+++||++ ++.|+.++++++.+.+.++++.+++.|.+ .|+++|+.+.+...+.++++..+||.+.+ ..+.
T Consensus 88 ~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~~d~~~~~~~~~~~~v~~~~~G~~~~-------~~~~ 156 (384)
T 3oo3_A 88 TRLRRTV-APAYSARRMERLRPRIEEIVEECLDDFES---VGAPVDFVRHAAWPIPAYIACEFLGVPRD-------DQAE 156 (384)
T ss_dssp HHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHH---SCSSEEHHHHTTTHHHHHHHHHHHTCCGG-------GHHH
T ss_pred HHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHHHHHHHHHHHHHcCCCHH-------HHHH
Confidence 9999997 89999999999999999999999999964 36789999999998888888889998765 2334
Q ss_pred HHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHhhhhcC
Q 021726 206 FGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQIWKQRG 285 (308)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~~~~~~ 285 (308)
+....+.++. .+ ..++..+..+.+.+++.++++++++. ..+|+++.|+++. +
T Consensus 157 ~~~~~~~~~~----------~~----------~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~d~l~~ll~~~--~- 208 (384)
T 3oo3_A 157 LSRMIRESRE----------SR----------LPRQRTLSGLGIVNYTKRLTSGKRRD-----PGDGMIGVIVREH--G- 208 (384)
T ss_dssp HHHHHHHHHH----------CS----------CHHHHHHHHHHHHHHHHHHHHHHHHS-----CCSSHHHHHHHHH--G-
T ss_pred HHHHHHHHhc----------cC----------ChHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCHHHHHHHhc--C-
Confidence 4444444332 00 11344556677788888888887642 2479999999862 2
Q ss_pred CCCCCCHHHHHHHHHHHhhccC
Q 021726 286 SKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 286 ~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
..+|++++..++.++++||+
T Consensus 209 --~~l~~~~l~~~~~~~~~AG~ 228 (384)
T 3oo3_A 209 --AEISDEELAGLAEGNLIMAA 228 (384)
T ss_dssp --GGSCHHHHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHhhH
Confidence 25999999999999999985
No 38
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=99.90 E-value=4e-22 Score=181.26 Aligned_cols=215 Identities=13% Similarity=0.144 Sum_probs=160.9
Q ss_pred CCCchHHHHHHHHhhCCeEEEEe-CCcCEEEecCHHHHHHHHHhcCccCCCCCC--c-cccccccc--CCcceEeccCCh
Q 021726 50 YSNPQNYFWRLSKQYGPMVSLRL-GSVPILVVSSAKMAEEVLKTHDLQFCSRPA--L-LSQQKVSY--NGLDVAFAPYNA 123 (308)
Q Consensus 50 ~~~~~~~~~~~~~~YG~v~~~~~-g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~--~-~~~~~~~~--~~~~~~~~~~g~ 123 (308)
..+++..+.+| ++||||+++++ |+.++++|+||+++++||.++ .|++++. + .....+.. .+.++ +..+|+
T Consensus 18 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l-~~~~g~ 93 (403)
T 3aba_A 18 PFLPPDGIADI-RAAAPVTRATFTSGHEAWLVTGYEEVRALLRDS--SFSVQVPHALHTQDGVVTQKPGRGSL-LWQDEP 93 (403)
T ss_dssp TTSCCTTHHHH-HHHCSEEEEECTTSCEEEEECCHHHHHHHHHCT--TEESCCSCCTTSSSCCCCCCCCTTCC-TTCCTT
T ss_pred ccChhHHHHHH-HhcCCeeeeccCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccc-ccCCch
Confidence 56788899999 89999999997 899999999999999999874 4777752 1 11111111 13444 445899
Q ss_pred hHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HHHHHHHHHHHHhCCcccccccccch
Q 021726 124 YWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KSLTSSITCRIGFGKSYEVEDQGISE 202 (308)
Q Consensus 124 ~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~ 202 (308)
.|+++||++ ++.|+.++++++.+.+.++++.+++.|.+ .++++|+.+.+ ..+++++|+. +||.+.+ .
T Consensus 94 ~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~-------~ 161 (403)
T 3aba_A 94 EHTSDRKLL-AKEFTVRRMQALRPNIQRIVDEHLDAIEA---RGGPVDLVKTFANAVPSMVISD-LFGVPVE-------R 161 (403)
T ss_dssp HHHHHHHHH-HHHSCHHHHHTTHHHHHHHHHHHHHHHHH---HCSCEEHHHHTTTHHHHHHHHH-HHTCCGG-------G
T ss_pred hHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHHHHHHHHHHHH-HcCCCHH-------H
Confidence 999999997 89999999999999999999999999974 25689998766 4799999998 6998765 2
Q ss_pred HHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHhhh
Q 021726 203 RSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQIWK 282 (308)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~~~ 282 (308)
.+.+....+.++.. .. .+ ++..++.+.+.+++.++|+++++. ..+|+++.|+++.+
T Consensus 162 ~~~~~~~~~~~~~~------------~~----~p---~~~~~~~~~~~~~~~~~i~~r~~~-----~~~dll~~ll~~~~ 217 (403)
T 3aba_A 162 RAEFQDIAEAMMRV------------DQ----DA---AATEAAGMRLGGLLYQLVQERRAN-----PGDDLISALITTED 217 (403)
T ss_dssp HHHHHHHHHHHSBS------------SS----CH---HHHHHHHHHHHHHHHHHHHHHHHS-----CCSSHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhc------------cC----cH---HHHHHHHHHHHHHHHHHHHHHHhC-----CCCCHHHHHHhhcc
Confidence 23343333322210 00 01 345566777888888999888753 24699999998754
Q ss_pred hcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 283 QRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 283 ~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
++ ..+|++++.+++.++++||+
T Consensus 218 ~~---~~l~~~ei~~~~~~l~~AG~ 239 (403)
T 3aba_A 218 PD---GVVDDMFLMNAAGTLLIAAH 239 (403)
T ss_dssp TT---CCCSHHHHHHHHHHHHHHHH
T ss_pred CC---CCCCHHHHHHHHHHHHHHHH
Confidence 32 36999999999999999985
No 39
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=99.89 E-value=2e-22 Score=183.56 Aligned_cols=214 Identities=13% Similarity=0.193 Sum_probs=155.4
Q ss_pred CCCchHHHHHHHHhhCCeEEEEe-CCcCEEEecCHHHHHHHHHhcCccCCCCCCcccccc---ccc----CCcceEeccC
Q 021726 50 YSNPQNYFWRLSKQYGPMVSLRL-GSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQK---VSY----NGLDVAFAPY 121 (308)
Q Consensus 50 ~~~~~~~~~~~~~~YG~v~~~~~-g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~~---~~~----~~~~~~~~~~ 121 (308)
..+++..+.+| ++||||+++++ |+.++|+|+||+++++||.++. |++++....... +.. .+.++ +..+
T Consensus 23 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~ 98 (408)
T 3abb_A 23 PYQPPKAYEER-RGESPLTQVTLFDGRPAWLITGHAEGRALLVDPR--LSSDWGHPDFPVVVRRTEDRGGLAFPL-IGVD 98 (408)
T ss_dssp TTSCCHHHHHH-CCSSSEEEEECTTSCEEEEECCHHHHHHHHTCTT--EECCTTSTTCCCCC---------CCTT-TTCC
T ss_pred ccCchHHHHHH-HhcCCeeeeecCCCCcEEEEeCHHHHHHHHcCCC--cccccccccccccccCCcccccccccc-ccCC
Confidence 56899999999 89999999998 8999999999999999998653 555543111110 110 12244 4458
Q ss_pred ChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHH-HHHHHHHHHHHhCCccccccccc
Q 021726 122 NAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMK-SLTSSITCRIGFGKSYEVEDQGI 200 (308)
Q Consensus 122 g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~-~~t~~vi~~~~fG~~~~~~~~~~ 200 (308)
|+.|+++||++ ++.|+.++++++.+.+.++++.+++.|.. .|+++|+.+.+. .+++++|+. +||.+.+
T Consensus 99 g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~~~~~~~~~vi~~-~~G~~~~------ 167 (408)
T 3abb_A 99 DPVHARQRRML-IPSFGVKRMNAIRPRLQSLVDRLLDDMLA---KGPGADLVSAFALPVPSVAICE-LLGVPYG------ 167 (408)
T ss_dssp TTHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHH---TCSCEEHHHHTTTHHHHHHHHH-HHTCCGG------
T ss_pred chHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCeehHHHHHHHHHHHHHHH-HhCCCHH------
Confidence 99999999996 89999999999999999999999999973 356899998886 489999997 6998765
Q ss_pred chHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHh
Q 021726 201 SERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQI 280 (308)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~ 280 (308)
..+.+......++... .| . +..++.+.+.+++.++|+++++. ..+|+++.|+++
T Consensus 168 -~~~~~~~~~~~~~~~~--------~~--~----------~~~~~~~~~~~~~~~~i~~r~~~-----~~~d~l~~ll~~ 221 (408)
T 3abb_A 168 -DHDFFEECSRNFVGAA--------TS--A----------EADAAFGELYTYLHGLVGRKQAE-----PEDGLLDELIAR 221 (408)
T ss_dssp -GHHHHHHHHHHHC--------------------------CCSSHHHHHHHHHHHHHHHHHHS-----CCSSHHHHHHHH
T ss_pred -HHHHHHHHHHHHhccc--------ch--H----------HHHHHHHHHHHHHHHHHHHHHhC-----CCCCHHHHHHhc
Confidence 2233443333322110 01 1 11224455667777888887653 237999999987
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 281 WKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 281 ~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
.+++ ..+|++++.+++.++++||+
T Consensus 222 ~~~~---~~ls~~ei~~~~~~l~~AG~ 245 (408)
T 3abb_A 222 QLEE---GDLDHDEVVMIALVLLVAGH 245 (408)
T ss_dssp HHTS---SSCCHHHHHHHHHHHHHHHH
T ss_pred ccCC---CCCCHHHHHHHHHHHHHHHH
Confidence 6533 36999999999999999985
No 40
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=99.89 E-value=1.7e-22 Score=186.33 Aligned_cols=228 Identities=12% Similarity=0.046 Sum_probs=164.1
Q ss_pred chHHHHHHHHhhCCeE--EEE-eCCcCEEEecCHHHHHHHHHhcCccCCCCCCcccccccc----------c---CCcce
Q 021726 53 PQNYFWRLSKQYGPMV--SLR-LGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQKVS----------Y---NGLDV 116 (308)
Q Consensus 53 ~~~~~~~~~~~YG~v~--~~~-~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~~~~----------~---~~~~~ 116 (308)
|+..+.++ ++||||+ ++. +|+.+++||++++.+++|+.++ ..|++||......... + .+.+
T Consensus 47 p~~~~~~l-r~~gPV~~~~~~~~g~~~~~vvt~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~- 123 (450)
T 3tkt_A 47 LLDRFDAL-RAEAPVAKVVAPDDEHEPFWLVSSFDGVMKASKDN-ATFLNNPKSTVFTLRVGEMMAKAITGGSPHLVES- 123 (450)
T ss_dssp HHHHHHHH-HHHCSEEEECCTTCSSCCEEEECSHHHHHHHHHCT-TTEESSSSCSSCCCHHHHHHHHHHHTSCSCSSCC-
T ss_pred chHHHHHH-HhcCCeecccccCCCCCCEEEEecHHHHHHHHhCc-ccccCCCccccccccccccccccccccccccccC-
Confidence 77888888 6899999 888 8889999999999999999665 7899887543321110 0 1123
Q ss_pred EeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HHHHHHHHHHHHhCCcccc
Q 021726 117 AFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KSLTSSITCRIGFGKSYEV 195 (308)
Q Consensus 117 ~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~ 195 (308)
++..+|+.|+++||++ ++.|+.++++++.+.+.++++.+++.|.+ .++++|+.+.+ ..+++++|+++ ||.+.+
T Consensus 124 l~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~~~~~dl~~~~~~~~~~~vi~~l-~G~~~~- 197 (450)
T 3tkt_A 124 LVQMDAPKHPKLRRLT-QDWFMPKNLARLDGEIRKIANEAIDRMLG---AGEEGDFMALVAAPYPLHVVMQI-LGVPPE- 197 (450)
T ss_dssp GGGCCTTHHHHHHHHH-HTTTSHHHHGGGHHHHHHHHHHHHHHHHH---TCSEEEHHHHTTTHHHHHHHHHH-TTCCGG-
T ss_pred cccCCCHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCEeeHHHHHHHHHHHHHHHH-cCCChh-
Confidence 4456899999999996 89999999999999999999999999974 26789998888 69999999996 897654
Q ss_pred cccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHH
Q 021726 196 EDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVD 275 (308)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~ 275 (308)
....+....+.++... ...+.|+..++.......++..+..+.+.+++.+++++++++ ..+|+++
T Consensus 198 ------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~-----~~~dll~ 262 (450)
T 3tkt_A 198 ------DEPKMLFLTQQMFGGQ----DEDMNKSGLKDLPPEQISQIVAGAVAEFERYFAGLAAERRRN-----PTDDVAT 262 (450)
T ss_dssp ------GHHHHHHHHHTTSCCC--------------------HHHHHHHHHHHHHHHHHHHHHHHHHS-----CCSSHHH
T ss_pred ------HHHHHHHHHHHHhccc----cchhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCHHH
Confidence 2334444333332211 112233332221112334566777888888999999988753 2579999
Q ss_pred HHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 276 VLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 276 ~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
.|+++.+++ ..+|++++.+++.++++||+
T Consensus 263 ~ll~~~~~~---~~ls~~ei~~~~~~l~~AG~ 291 (450)
T 3tkt_A 263 VIANAVVDG---EPMSDRDTAGYYIITASAGH 291 (450)
T ss_dssp HHHTCEETT---EECCHHHHHHHHHHHHHHHS
T ss_pred HHHhccccC---CCCCHHHHHHHHHHHHHHHH
Confidence 999876533 26999999999999999996
No 41
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=99.89 E-value=1.1e-21 Score=180.19 Aligned_cols=222 Identities=11% Similarity=0.105 Sum_probs=166.2
Q ss_pred CCchHHHHHHHHhhCCeEEEEeC-------CcCEEEecCHHHHHHHHHhcCccCCCCCCc--c-cccccccCCcceEecc
Q 021726 51 SNPQNYFWRLSKQYGPMVSLRLG-------SVPILVVSSAKMAEEVLKTHDLQFCSRPAL--L-SQQKVSYNGLDVAFAP 120 (308)
Q Consensus 51 ~~~~~~~~~~~~~YG~v~~~~~g-------~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~--~-~~~~~~~~~~~~~~~~ 120 (308)
.+++..+.+|. +||||++++++ +.++|+|+||+++++||.++ +.|++||.. . ....+...+.++++ .
T Consensus 44 ~~p~~~~~~l~-~~Gpv~~~~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~-~ 120 (435)
T 2wm5_A 44 DVRDGAFATLR-REAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHP-DIFSSYPNITINDQTPELAEYFGSMIV-L 120 (435)
T ss_dssp HHHHHHHHHHH-HHCSEEEECCCCC---CCCCCEEEECSHHHHHHHHHCT-TTEECSSCCSSSCCCHHHHHHHHGGGG-C
T ss_pred CChhHHHHHHH-hcCCeEecccccccccCCCCCeEEEcCHHHHHHHHcCc-ccccCccccccCccccchhhhcccccc-C
Confidence 46788899995 79999999986 67899999999999999875 478888742 1 11111111334544 4
Q ss_pred CChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HHHHHHHHHHHHhCCcccccccc
Q 021726 121 YNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KSLTSSITCRIGFGKSYEVEDQG 199 (308)
Q Consensus 121 ~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~ 199 (308)
+|+.|+++||++ ++.|+.+.++++.+.+.++++.+++.|.+. .+++++|+.+.+ ..+++++|+++ ||.+.+
T Consensus 121 dg~~h~~~R~~l-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~-~~~~~vd~~~~~~~~~~~~vi~~~-~G~~~~----- 192 (435)
T 2wm5_A 121 DDPRHQRLRSIV-SRAFTPKVVARIEAAVRDRAHRLVSSMIAN-NPDRQADLVSELAGPLPLQIICDM-MGIPKA----- 192 (435)
T ss_dssp CTTHHHHHHHHH-HHTCCHHHHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEHHHHTTTHHHHHHHHHH-HTCCGG-----
T ss_pred CcHHHHHHHHHh-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcEehHHHHHHHHHHHHHHHH-cCCCHH-----
Confidence 799999999997 899999999999999999999999999753 224589998766 78999999999 999876
Q ss_pred cchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHH
Q 021726 200 ISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQ 279 (308)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~ 279 (308)
..+.+.+..+.++... .|.+. . ..++..++.+.+.+++.++|+++++. ..+|+++.|++
T Consensus 193 --~~~~~~~~~~~~~~~~--------~p~~~-----~-~~~~~~~~~~~~~~~~~~~i~~r~~~-----~~~dll~~ll~ 251 (435)
T 2wm5_A 193 --DHQRIFHWTNVILGFG--------DPDLA-----T-DFDEFMQVSADIGAYATALAEDRRVN-----HHDDLTSSLVE 251 (435)
T ss_dssp --GHHHHHHHHHHHHHTT--------CTTSC-----C-CHHHHHHHHHHHHHHHHHHHHHHHHS-----CCSSHHHHHHH
T ss_pred --HHHHHHHHHHHHhccC--------Ccchh-----h-hHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCHHHHHHh
Confidence 2334444444444321 13321 1 11355667778888899999988752 24799999998
Q ss_pred hhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 280 IWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 280 ~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
+..++ ..+|++++..++.++++||+
T Consensus 252 ~~~~~---~~ls~~ei~~~~~~l~~AG~ 276 (435)
T 2wm5_A 252 AEVDG---ERLSSREIASFFILLVVAGN 276 (435)
T ss_dssp CCBTT---BCCCHHHHHHHHHHHHHHTT
T ss_pred hhccC---CCCCHHHHHHHHHHHHHHhh
Confidence 75432 36999999999999999996
No 42
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=99.88 E-value=2.4e-21 Score=176.74 Aligned_cols=230 Identities=18% Similarity=0.239 Sum_probs=165.4
Q ss_pred CCCCCCCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEe-CCcCEEEecCHHHHHHHHHhcCccCCCCCCccccc--
Q 021726 31 ALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRL-GSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQ-- 107 (308)
Q Consensus 31 ~lpPGP~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~-g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~-- 107 (308)
.-.|||.. |+- ..+ ..+|+..+.+|. +||||+++++ |+.++++|+||+++++||.++ .|++|+......
T Consensus 7 ~~~~g~~~-~~~---~~~-~~~p~~~~~~l~-~~Gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~ 78 (413)
T 2z36_A 7 DELAGLEL-PVE---RGC-PFAPPAAYERLR-ERAPINKVRLTSGGQAWWVSGHEEARAVLADG--RFSSDKRKDGFPLF 78 (413)
T ss_dssp ---CCCEE-CCC---CCB-TTBCCHHHHHHH-HHCSEEEEEETTSCEEEEECSHHHHHHHHHCT--TEECCTTSTTCCCS
T ss_pred HHhccccC-CCC---ccc-ccCchHHHHHHH-HcCCeeEeecCCCceEEEEecHHHHHHHHcCC--CcccCccccCcccc
Confidence 33567752 442 233 568999999997 7899999998 899999999999999999864 688776322111
Q ss_pred ----cccc---CCcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHH-HH
Q 021726 108 ----KVSY---NGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMK-SL 179 (308)
Q Consensus 108 ----~~~~---~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~-~~ 179 (308)
.... .+.+.++..+|+.|+++||++ ++.|+.++++++.+.+.++++.+++.|.+ ..++++|+.+.+. .+
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~~~~~~d~~~~~~~~~ 155 (413)
T 2z36_A 79 TLDAATLQQLRSQPPLMLGMDGAEHSAARRPV-IGEFTVKRLAALRPRIQDIVDHFIDDMLA--TDQRPVDLVQALSLPV 155 (413)
T ss_dssp SCCHHHHHHHTTSCCCGGGCCHHHHHHHHHHH-HGGGSHHHHHHHHHHHHHHHHHHHHHHTT--CSCSSEEHHHHTTTHH
T ss_pred ccccccccccccccccccccCchHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCccHHHHHhhhh
Confidence 1110 134513345899999999996 89999999999999999999999999973 2266899987665 69
Q ss_pred HHHHHHHHHhCCcccccccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 021726 180 TSSITCRIGFGKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEE 259 (308)
Q Consensus 180 t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 259 (308)
++++++.+ ||.+.+ ..+.+......+. ... .+ ++..++.+.+.+++.+++++
T Consensus 156 ~~~vi~~~-~G~~~~-------~~~~~~~~~~~~~------------~~~------~~--~~~~~~~~~~~~~~~~~i~~ 207 (413)
T 2z36_A 156 PSLVICEL-LGVPYT-------DHDFFQSRTTMMV------------SRT------SM--EDRRRAFAELRAYIDDLITR 207 (413)
T ss_dssp HHHHHHHH-HTCCGG-------GHHHHHHHHHHTT------------CSS------CH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCHH-------HHHHHHHHHHHHh------------ccc------Cc--HHHHHHHHHHHHHHHHHHHH
Confidence 99999995 998765 1223332222111 000 01 34556677788888899998
Q ss_pred hhCccCCCCCCCcHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 260 HLDPARIKTDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 260 ~~~~~~~~~~~~dll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
+++. ..+|+++.|+++.++++ .+|++++.+++.++++||+
T Consensus 208 r~~~-----~~~dll~~ll~~~~~~~---~ls~~ei~~~~~~l~~AG~ 247 (413)
T 2z36_A 208 KESE-----PGDDLFSRQIARQRQEG---TLDHAGLVSLAFLLLTAGH 247 (413)
T ss_dssp HHSS-----CCSSHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHS
T ss_pred HHhC-----CCCCHHHHHHHhhcCCC---CCCHHHHHHHHHHHHhcch
Confidence 8763 24699999998754332 5999999999999999996
No 43
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=99.88 E-value=1.6e-21 Score=177.27 Aligned_cols=220 Identities=16% Similarity=0.189 Sum_probs=161.7
Q ss_pred CCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCccccc---cc-ccCCcceEeccCChhH
Q 021726 50 YSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQ---KV-SYNGLDVAFAPYNAYW 125 (308)
Q Consensus 50 ~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~---~~-~~~~~~~~~~~~g~~W 125 (308)
..+++..+.+| ++||||+++++|+.++++|++|++++++|.++ +.|++++...... .+ ...+.++ +..+|+.|
T Consensus 12 ~~~p~~~~~~~-r~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~g~~h 88 (404)
T 3ejb_B 12 LKNPYSFYDTL-RAVHPIYKGSFLKYPGWYVTGYEETAAILKDA-RFKVRTPLPESSTKYQDLSHVQNQMM-LFQNQPDH 88 (404)
T ss_dssp HHCHHHHHHHH-HHHCSEEEEEETTEEEEEECCHHHHHHHHHCT-TEECCCSSCTTCCTTHHHHHHHHTSG-GGCCTTHH
T ss_pred ccCchHHHHHH-HhhCCEeeccCCCCCEEEEecHHHHHHHHhCc-ccccCcccccccccccchhhhhhcch-hhcCCchH
Confidence 35788899888 58999999999999999999999999999877 6788887522111 11 1112344 45589999
Q ss_pred HHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HHHHHHHHHHHHhCCcccccccccchHH
Q 021726 126 REIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KSLTSSITCRIGFGKSYEVEDQGISERS 204 (308)
Q Consensus 126 k~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~ 204 (308)
+++||++ ++.|+.++++++.+.+.++++.+++.|.+ +.++|+...+ ..+++++++.+ ||.+.+ ..+
T Consensus 89 ~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~d~~~~~~~~~~~~vi~~~-~G~~~~-------~~~ 155 (404)
T 3ejb_B 89 RRLRTLA-SGAFTPRTTESYQPYIIETVHHLLDQVQG----KKKMEVISDFAFPLASFVIANI-IGVPEE-------DRE 155 (404)
T ss_dssp HHHHHHH-HGGGSHHHHHTTHHHHHHHHHHHHHTTTT----TSEEEHHHHTHHHHHHHHHHHH-HTCCGG-------GHH
T ss_pred HHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHhhh----cCCcchHHHHHHHHHHHHHHHH-cCCCHH-------HHH
Confidence 9999997 89999999999999999999999999863 5678986554 56999999995 898765 233
Q ss_pred HHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHhhhhc
Q 021726 205 RFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQIWKQR 284 (308)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~~~~~ 284 (308)
.+.+....+..... .|.. ....++..+..+.+.+++.+.++++++. ..+|+++.|+ ...++
T Consensus 156 ~~~~~~~~~~~~~~-------~p~~------~~~~~~~~~~~~~~~~~~~~~i~~r~~~-----~~~d~l~~ll-~~~~~ 216 (404)
T 3ejb_B 156 QLKEWAASLIQTID-------FTRS------RKALTEGNIMAVQAMAYFKELIQKRKRH-----PQQDMISMLL-KGREK 216 (404)
T ss_dssp HHHHHHHHHHGGGS-------TTCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CCSSHHHHHH-HC---
T ss_pred HHHHHHHHHHHhcc-------CCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CcchHHHHHH-hcccC
Confidence 44444444333221 1321 1223456677788888899999888742 3579999999 43333
Q ss_pred CCCCCCCHHHHHHHHHHHhhccC
Q 021726 285 GSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 285 ~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
..+|++++.+++.++++||+
T Consensus 217 ---~~ls~~el~~~~~~l~~AG~ 236 (404)
T 3ejb_B 217 ---DKLTEEEAASTCILLAIAGH 236 (404)
T ss_dssp ----CCCHHHHHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHcch
Confidence 26999999999999999985
No 44
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=99.88 E-value=1.9e-21 Score=177.53 Aligned_cols=215 Identities=14% Similarity=0.206 Sum_probs=162.5
Q ss_pred CCCchHHHHHHHHhhCCeEEEEeC-CcCEEEecCHHHHHHHHHhcCccCCCCCCcccccccc-------cCCcceEeccC
Q 021726 50 YSNPQNYFWRLSKQYGPMVSLRLG-SVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQKVS-------YNGLDVAFAPY 121 (308)
Q Consensus 50 ~~~~~~~~~~~~~~YG~v~~~~~g-~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~~~~-------~~~~~~~~~~~ 121 (308)
..+++..+.+|.++ |||+++++| +.+++||++|+++++||.++ .|++++......... ..+.++ +..+
T Consensus 28 ~~dp~~~~~~l~~~-Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~d 103 (417)
T 3tyw_A 28 PFAAPAEYAALRTD-DPVARVTLPTRREAWVVTRYDDVRELLSDP--RVSADIRRPGFPALGEGEQEAGARFRPF-IRTD 103 (417)
T ss_dssp TTSCCTHHHHHHHT-CTEEEEECTTSCEEEEECCHHHHHHHHHCT--TEECCSSSTTCCCSSTTTSTTSSSCCCG-GGCC
T ss_pred ccCchHHHHHHHhh-CCeeeeecCCCCCeEEEcCHHHHHHHHcCC--CcccCCccccccccccccccccccccch-hhcC
Confidence 56899999999987 999999997 48999999999999999876 687764321111111 113344 4558
Q ss_pred ChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HHHHHHHHHHHHhCCccccccccc
Q 021726 122 NAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KSLTSSITCRIGFGKSYEVEDQGI 200 (308)
Q Consensus 122 g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~ 200 (308)
|+.|+++||++ ++.|+.++++++.+.+.++++.+++.|.+ .|+++|+.+.+ ..+++++++.+ ||.+.+ +
T Consensus 104 g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~~~~~~~~~vi~~~-~G~~~~--~--- 173 (417)
T 3tyw_A 104 APEHTRYRRML-LPAFTVRRVRAMRPAVQARVDEILDGMLA---AGGPVDLVSAYANAVSTSVICEL-LGIPRH--D--- 173 (417)
T ss_dssp HHHHHHHHHHH-GGGGCHHHHHHTHHHHHHHHHHHHHHHHH---HCSSEEHHHHTHHHHHHHHHHHH-HTCCTT--T---
T ss_pred CcHHHHHHHHH-HhhhCHHHHHHHHHHHHHHHHHHHHHHHh---hCCCcchHHHHHHHHHHHHHHHH-hCCCHH--H---
Confidence 99999999997 89999999999999999999999999974 36789999988 57899999997 998776 2
Q ss_pred chHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHh
Q 021726 201 SERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQI 280 (308)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~ 280 (308)
.+.+......+... .+. .++..++.+.+.+++.++++++++. ..+|+++.|+++
T Consensus 174 --~~~~~~~~~~~~~~---------~~~----------~~~~~~~~~~l~~~~~~~i~~r~~~-----~~~d~l~~ll~~ 227 (417)
T 3tyw_A 174 --LEFFRDVTRISGSR---------NST----------AEQVSEALGGLFGLLGGLVAERREE-----PRDDLISKLVTD 227 (417)
T ss_dssp --TTHHHHHHHHHHSS---------SSC----------TTHHHHHHHHHHHHHHHHHHHHHSS-----CCSSHHHHHHHH
T ss_pred --HHHHHHHHHHHhcc---------cCC----------HHHHHHHHHHHHHHHHHHHHHHhhC-----CCCCHHHHHHHh
Confidence 22333333322211 010 1234556677788888999988763 247999999987
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 281 WKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 281 ~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
..+++ .+|++++.+++.++++||+
T Consensus 228 ~~~~~---~ls~~el~~~~~~l~~AG~ 251 (417)
T 3tyw_A 228 HLVPG---NVTTEQLLSTLGITINAGR 251 (417)
T ss_dssp TTTTT---SSCHHHHHHHHHHHHHHHH
T ss_pred cccCC---CCCHHHHHHHHHHHHhhhH
Confidence 65443 5999999999999999985
No 45
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=99.88 E-value=1.8e-21 Score=177.33 Aligned_cols=214 Identities=14% Similarity=0.224 Sum_probs=160.1
Q ss_pred CCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcccc---c-cccc-CCcceEeccCChh
Q 021726 50 YSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQ---Q-KVSY-NGLDVAFAPYNAY 124 (308)
Q Consensus 50 ~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~---~-~~~~-~~~~~~~~~~g~~ 124 (308)
..+++..+.+| ++||||+++++|+.+++||++|+++++||.++. |++||..... . .+.. .+.++ +..+|+.
T Consensus 19 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~l-~~~~g~~ 94 (411)
T 3a4g_A 19 WQNPHPAYAAL-RAEDPVRKLALPDGPVWLLTRYADVREAFVDPR--LSKDWRHTLPEDQRADMPATPTPMM-ILMDPPD 94 (411)
T ss_dssp TTCCHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHTCTT--EESCGGGGSCGGGCTTCCSCSSCCG-GGCCTTH
T ss_pred hcCchHHHHHH-HhcCCeeeccCCCCCEEEEecHHHHHHHHhCCC--cccccccccccccccccCccccccc-ccCCchH
Confidence 56899999999 899999999999999999999999999998763 8887643211 0 0111 23444 4458999
Q ss_pred HHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HHHHHHHHHHHHhCCcccccccccchH
Q 021726 125 WREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KSLTSSITCRIGFGKSYEVEDQGISER 203 (308)
Q Consensus 125 Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~ 203 (308)
|+++||++ ++.|+.++++++.+.+.++++.+++.|.+ ++++|+...+ ..+++++|+.+ ||.+.+ ..
T Consensus 95 h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~vd~~~~~~~~~~~~vi~~~-~G~~~~-------~~ 161 (411)
T 3a4g_A 95 HTRLRKLV-GRSFTVRRMNELEPRITEIADGLLAGLPT----DGPVDLMREYAFQIPVQVICEL-LGVPAE-------DR 161 (411)
T ss_dssp HHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHHHHSCS----SSCEEHHHHTTTTHHHHHHHHH-HTCCGG-------GH
T ss_pred HHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHh----cCCccHHHHHHHHhHHHHHHHH-hCCCHH-------HH
Confidence 99999996 89999999999999999999999999863 3579997555 68999999975 998765 22
Q ss_pred HHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHhhhh
Q 021726 204 SRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQIWKQ 283 (308)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~~~~ 283 (308)
+.+......++.. .|. ++..++.+.+.+++.++|+++++. ..+|+++.|+++.++
T Consensus 162 ~~~~~~~~~~~~~---------~p~-----------~~~~~~~~~~~~~~~~~i~~r~~~-----~~~d~l~~ll~~~~~ 216 (411)
T 3a4g_A 162 DDFSAWSSVLVDD---------SPA-----------DDKNAAMGKLHGYLSDLLERKRTE-----PDDALLSSLLAVSDE 216 (411)
T ss_dssp HHHHHHHHHHTTS---------SCT-----------TTHHHHHHHHHHHHHHHHHHHHHS-----CCSSHHHHHHHCCCT
T ss_pred HHHHHHHHHHhcc---------CCH-----------HHHHHHHHHHHHHHHHHHHHHHhC-----CCCCHHHHHHHhhcc
Confidence 3344333332221 120 123345667778888888888752 246999999987542
Q ss_pred cCCCCCCCHHHHHHHHHHHhhccC
Q 021726 284 RGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 284 ~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
++ ..+|++++.+++.++++||+
T Consensus 217 ~~--~~ls~~ei~~~~~~l~~AG~ 238 (411)
T 3a4g_A 217 DG--DRLSQEELVAMAMLLLIAGH 238 (411)
T ss_dssp TC--CCCCHHHHHHHHHHHHHHHS
T ss_pred CC--CCCCHHHHHHHHHHHHHhch
Confidence 21 36999999999999999996
No 46
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=99.88 E-value=1.1e-22 Score=188.28 Aligned_cols=248 Identities=12% Similarity=0.163 Sum_probs=157.4
Q ss_pred CCCCCCCCCCCC-CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcc-
Q 021726 27 IKSIALPPGPRG-LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALL- 104 (308)
Q Consensus 27 ~~~~~lpPGP~~-~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~- 104 (308)
++..+.||||++ +|++||++++ ..+++..+.+|+++|||||++++|+.+++||+||+++++++.++.. ++.++...
T Consensus 14 ~~~~~~pPgp~~~~P~iG~~~~~-~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~-~~~~~~~~~ 91 (475)
T 3b98_A 14 TRRRNEPPLDKGMIPWLGHALEF-GKDAAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVAS-LDQTSYAQV 91 (475)
T ss_dssp CCCTTCCCEECCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHHHTCTTT-EESHHHHHH
T ss_pred ccCCCCCCCCCCCcchHHhHHHH-hhCHHHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHHHcCccc-CCchHHHHH
Confidence 344578999998 9999999987 6789999999999999999999999999999999999999976542 44332211
Q ss_pred cccccccCCcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhc-C-CCCcccHHHHHHHHHHH
Q 021726 105 SQQKVSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSA-V-ASKPVNLSELMKSLTSS 182 (308)
Q Consensus 105 ~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~-~-~~~~vd~~~~~~~~t~~ 182 (308)
...... +.+.+ ..+|+.| ||++ .+.|+.+.++.+.+.+.+++..+++.+.... . ....+++...+...+++
T Consensus 92 ~~~~~~--g~~~~-~~~~~~~---R~~~-~~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
T 3b98_A 92 LMKRIF--NMILP-SHNPESE---KKRA-EMHFQGASLTQLSNSMQNNLRLLMTPSEMGLKTSEWKKDGLFNLCYSLLFK 164 (475)
T ss_dssp HHHHTT--CCCCT-TCCHHHH---HHHH-HHHTSHHHHHHHHHHHHHHHHHHSSTTTTTCSSCSCEEEEHHHHHHHHHHH
T ss_pred HHHHHh--CCCCC-CCChHHH---HHHH-HHHcChhhHHHHHHHHHHHHHHHHhhcccccCCCCceeehHHHHHHHHHHH
Confidence 111111 33433 3357766 4564 6789999999999999999988888764311 1 11246777777777888
Q ss_pred HHHHHHhCCcccccccccchHHHHHHHHHHHHhccccccccccccccccccccc-hHHHHHHHHHHHHHHHHHHHHHHhh
Q 021726 183 ITCRIGFGKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNIT-GMIRRLERNFKEFDAFHQELIEEHL 261 (308)
Q Consensus 183 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~ 261 (308)
+++...||.+.+ ....+....+.+.. +.+.+|++.+. +++ ...+...+..+.+.+ .+.++++
T Consensus 165 ~~~~~~~g~~~~-------~~~~~~~~~~~~~~------~~~~~p~l~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~ 227 (475)
T 3b98_A 165 TGYLTVFGAENN-------NSAALTQIYEEFRR------FDKLLPKLART-TVNKEEKQIASAAREKLWK---WLTPSGL 227 (475)
T ss_dssp HHHHHHHCCTTS-------CHHHHHHHHHHHHH------HHHHHHHHHTT-CCCHHHHHHHHHHHHHHHH---HHSCTTS
T ss_pred HhhhheeCCccc-------cchhcHHHHHHHHH------HHhhhHHHHHH-hcChhhhHHHHHHHHHHHH---HHHHHHh
Confidence 887778885422 11222222222221 12335544321 112 122233333322222 1222222
Q ss_pred CccCCCCCCCcHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 262 DPARIKTDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 262 ~~~~~~~~~~dll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
++ ....+|+++.+++..++++ .++++++. .+.++++||+
T Consensus 228 ~~---~~~~~d~l~~ll~~~~~~~---~~~~~~i~-~~~~~l~ag~ 266 (475)
T 3b98_A 228 DR---KPREQSWLGSYVKQLQDEG---IDAEMQRR-AMLLQLWVTQ 266 (475)
T ss_dssp CC---CCCTTSHHHHHHHHHHHTT---CCHHHHHH-HHHHHHHHHH
T ss_pred hc---cccccHHHHHHHHHHHHcC---CCHHHHHH-HHHHHHHHcc
Confidence 21 2346799999998765433 48899998 8888888884
No 47
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.88 E-value=7.3e-22 Score=179.80 Aligned_cols=220 Identities=17% Similarity=0.299 Sum_probs=160.7
Q ss_pred CCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCC--ccc---cc---cccc--CCcceEec
Q 021726 50 YSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPA--LLS---QQ---KVSY--NGLDVAFA 119 (308)
Q Consensus 50 ~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~--~~~---~~---~~~~--~~~~~~~~ 119 (308)
..+++..+.+| ++||||+++++|+.++|+|+||+++++|+.++. ++.++. +.. .. .+.. .+.++ +.
T Consensus 14 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ 89 (408)
T 1odo_A 14 GADHHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSSD--VSKDARAHWPAFGEVVGTWPLALWVAVENM-FT 89 (408)
T ss_dssp CTTHHHHHHHH-HTTCSEEEEEETTEEEEEECCHHHHHHHTTCTT--EESCHHHHCTTHHHHTTTCTTTHHHHCCSG-GG
T ss_pred cCChHHHHHHH-HHhCCeEEeccCCCCEEEECCHHHHHHHHcCCC--cccccccccccccccccccccccccccccc-cc
Confidence 56899999999 999999999999899999999999999998653 444432 110 00 0000 12344 45
Q ss_pred cCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHH-HHHHHHHHHHHhCCccccccc
Q 021726 120 PYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMK-SLTSSITCRIGFGKSYEVEDQ 198 (308)
Q Consensus 120 ~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~-~~t~~vi~~~~fG~~~~~~~~ 198 (308)
.+|+.|+++||++ +++|+.++++++.+.+.++++.+++.|.+. ..++++|+.+.+. .+++++|+. +||.+.+
T Consensus 90 ~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-~~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~---- 162 (408)
T 1odo_A 90 AYGPNHRKLRRLV-APAFSARRVDAMRPAVEAMVTGLVDRLAEL-PAGEPVDLRQELAYPLPIAVIGH-LMGVPQD---- 162 (408)
T ss_dssp CCHHHHHHHHHTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHHS-CTTSCEEHHHHTTTHHHHHHHHH-HHTCCHH----
T ss_pred cCChHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCcchHHHHhhhhHHHHHHH-HhCCCHH----
Confidence 6899999999997 899999999999999999999999999753 2367899998887 599999996 6998664
Q ss_pred ccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHH
Q 021726 199 GISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLL 278 (308)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll 278 (308)
..+.+....+.++.. . . . .++..++.+.+.+++.++|+++++. ..+|+++.|+
T Consensus 163 ---~~~~~~~~~~~~~~~-----------~---~---~--~~~~~~~~~~~~~~~~~~i~~r~~~-----~~~d~l~~ll 215 (408)
T 1odo_A 163 ---RRDGFRALVDGVFDT-----------T---L---D--QAEAQANTARLYEVLDQLIAAKRAT-----PGDDMTSLLI 215 (408)
T ss_dssp ---HHHHHHHHHHHHHCT-----------T---C---C--HHHHHHHHHHHHHHHHHHHHHHHHS-----CCSSHHHHHH
T ss_pred ---HHHHHHHHHHHHhcc-----------c---C---C--HHHHHHHHHHHHHHHHHHHHHHhhC-----CCCCHHHHHH
Confidence 223344433333220 0 0 0 1344556777888888899888752 2479999999
Q ss_pred HhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 279 QIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 279 ~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
++.+++..+..+|++++.+++.++++||+
T Consensus 216 ~~~~~~~~~~~l~~~ei~~~~~~~~~AG~ 244 (408)
T 1odo_A 216 AARDDEGDGDRLSPEELRDTLLLMISAGY 244 (408)
T ss_dssp HHHCC-----CCCHHHHHHHHHHHHHHHH
T ss_pred HhcccccccCCCCHHHHHHHHHHHHHHhH
Confidence 87543111236999999999999999985
No 48
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=99.88 E-value=2.2e-21 Score=177.14 Aligned_cols=216 Identities=15% Similarity=0.254 Sum_probs=160.0
Q ss_pred CCCchHHHHHHHHhhCCeEEEEe-CCcCEEEecCHHHHHHHHHhcCccCCCCCCc-cccccccc--CCcceEeccCChhH
Q 021726 50 YSNPQNYFWRLSKQYGPMVSLRL-GSVPILVVSSAKMAEEVLKTHDLQFCSRPAL-LSQQKVSY--NGLDVAFAPYNAYW 125 (308)
Q Consensus 50 ~~~~~~~~~~~~~~YG~v~~~~~-g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~-~~~~~~~~--~~~~~~~~~~g~~W 125 (308)
..+++..+.+| ++||||+++++ |+.++++|+||+++++|+.++ .|++++.. .....+.. .+.++ +..+|+.|
T Consensus 36 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~i~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~l-~~~dg~~h 111 (417)
T 2y5n_A 36 GLTLAGRYGEL-QETEPVSRVRPPYGEEAWLVTRYEDVRAVLGDG--RFVRGPSMTRDEPRTRPEMVKGGL-LSMDPPEH 111 (417)
T ss_dssp SCCCCHHHHHH-HHHCSEEEEECSBSCCEEEECSHHHHHHHHTCT--TEESGGGGTSCCCBSSSSCCCCSG-GGCCTTHH
T ss_pred ccCchHHHHHH-HhcCCeEeeccCCCceEEEECCHHHHHHHHcCC--CcccCccccccccccCcccccccC-ccCCchHH
Confidence 56899999999 89999999997 899999999999999999865 47766532 21111111 13444 44589999
Q ss_pred HHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHH-HHHHHHHHHHHhCCcccccccccchHH
Q 021726 126 REIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMK-SLTSSITCRIGFGKSYEVEDQGISERS 204 (308)
Q Consensus 126 k~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~-~~t~~vi~~~~fG~~~~~~~~~~~~~~ 204 (308)
+++||++ ++.|+.++++++.+.+.++++++++.|.. +++++|+.+.+. .+++++|+. +||.+.+ ..+
T Consensus 112 ~~~R~~l-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~~~~vdl~~~~~~~~~~~vi~~-~~G~~~~-------~~~ 179 (417)
T 2y5n_A 112 SRLRRLV-VKAFTARRAESLRPRAREIAHELVDQMAA---TGQPADLVAMFARQLPVRVICE-LLGVPSA-------DHD 179 (417)
T ss_dssp HHHHHHH-HHHSCHHHHHHTHHHHHHHHHHHHHHHHH---HCSSEEHHHHTTTTHHHHHHHH-HHTCCGG-------GHH
T ss_pred HHHHHHH-hhhcCHHHHHHHHHHHHHHHHHHHHHHHh---CCCCeeHHHHHHHHhHHHHHHH-HcCCCHH-------HHH
Confidence 9999997 88999999999999999999999999973 123799987774 699999998 6998765 222
Q ss_pred HHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHhhhhc
Q 021726 205 RFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQIWKQR 284 (308)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~~~~~ 284 (308)
.+....+.++. ... .+ .++..++.+.+.+++.++|+++++. ..+|+++.|+++.+++
T Consensus 180 ~~~~~~~~~~~------------~~~----~~--~~~~~~~~~~l~~~~~~~i~~r~~~-----~~~dll~~ll~~~~~~ 236 (417)
T 2y5n_A 180 RFTRWSGAFLS------------TAE----VT--AEEMQEAAEQAYAYMGDLIDRRRKE-----PTDDLVSALVQARDQQ 236 (417)
T ss_dssp HHHHHHHTTST------------TCC----CC--HHHHHHHHHHHHHHHHHHHHHHHHS-----CCSSHHHHHHHCCBTT
T ss_pred HHHHHHHHHhc------------ccC----CC--HHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCHHHHHHhhhccC
Confidence 33332221111 000 01 1345567777888888999888753 2479999999875432
Q ss_pred CCCCCCCHHHHHHHHHHHhhccC
Q 021726 285 GSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 285 ~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
..+|++++.+++.++++||+
T Consensus 237 ---~~ls~~ei~~~~~~l~~AG~ 256 (417)
T 2y5n_A 237 ---DSLSEQELLDLAIGLLVAGY 256 (417)
T ss_dssp ---BCCCHHHHHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHHhH
Confidence 36999999999999999985
No 49
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=99.88 E-value=8e-22 Score=178.94 Aligned_cols=214 Identities=12% Similarity=0.109 Sum_probs=162.4
Q ss_pred CCCchHHHHHHHHhh--CCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcccccccccCCcceEeccCChhHHH
Q 021726 50 YSNPQNYFWRLSKQY--GPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWRE 127 (308)
Q Consensus 50 ~~~~~~~~~~~~~~Y--G~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~ 127 (308)
..+++..+.+|.++| |||+++++|+ +++||+||+++++|+ ++.+.|++|+.......... +...++..+|+.|++
T Consensus 18 ~~~p~~~~~~l~~~Y~~Gpv~~~~~~~-~~~vv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~ 94 (398)
T 4fb2_A 18 DGTPHAFFEALRDEAETTPIGWSEAYG-GHWVVAGYKEIQAVI-QNTKAFSNKGVTFPRYETGE-FELMMAGQDDPVHKK 94 (398)
T ss_dssp TSSSHHHHHHHHHHHTTCSEEEECGGG-CEEEECSHHHHHHHH-TCCSSEEGGGCSSSCC-----CCCTTTTCCTTHHHH
T ss_pred hcChhHHHHHHHhcCCCCCeEEecCCC-CEEEEccHHHHHHHH-hChhhccCCcccccCCCCcc-cccCcccCCchHHHH
Confidence 568999999999999 9999999986 699999999999999 55678988875433211111 222345568999999
Q ss_pred HHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HHHHHHHHHHHHhCCcccccccccchHHHH
Q 021726 128 IRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KSLTSSITCRIGFGKSYEVEDQGISERSRF 206 (308)
Q Consensus 128 ~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~ 206 (308)
+||++ ++.|+.++++++.+.+.++++.+++.|.+ +.++|+...+ ..+++++++. +||.+.+ ..+.+
T Consensus 95 ~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~vi~~-~~G~~~~-------~~~~~ 161 (398)
T 4fb2_A 95 YRQLV-AKPFSPEATDLFTEQLRQSTNDLIDARIE----LGEGDAATWLANEIPARLTAI-LLGLPPE-------DGDTY 161 (398)
T ss_dssp HHHHH-HTTTCHHHHHTTHHHHHHHHHHHHHTTTT----TTEEEHCCCCCTTHHHHHHHH-HTTSCGG-------GHHHH
T ss_pred HHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHhh----cCCccHHHHHHHHHHHHHHHH-HcCCCHH-------HHHHH
Confidence 99996 89999999999999999999999999863 3458875544 6899999999 6898665 23344
Q ss_pred HHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHhhhhcCC
Q 021726 207 GALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQIWKQRGS 286 (308)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~~~~~~~ 286 (308)
.+....++. |. . .++..+..+.+.+++.+.++++++. ..+|+++.|+++.+++
T Consensus 162 ~~~~~~~~~-----------~~------~---~~~~~~~~~~~~~~~~~~i~~r~~~-----~~~d~l~~ll~~~~~~-- 214 (398)
T 4fb2_A 162 RRWVWAITH-----------VE------N---PEEGAEIFAELVAHARTLIAERRTN-----PGNDIMSRVIMSKIDG-- 214 (398)
T ss_dssp HHHHHHHHH-----------CC------C---HHHHHHHHHHHHHHHHHHHHHHHHS-----CCSSHHHHHHHCCBTT--
T ss_pred HHHHHHHhc-----------CC------C---HHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCHHHHHHHcccCC--
Confidence 444443332 11 0 1245566777888888999988752 2579999999876533
Q ss_pred CCCCCHHHHHHHHHHHhhccC
Q 021726 287 KVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 287 ~~~~t~~~i~~~~~~l~~a~~ 307 (308)
..+|++++..++.++++||+
T Consensus 215 -~~l~~~~i~~~~~~l~~AG~ 234 (398)
T 4fb2_A 215 -ESLSEDDLIGFFTILLLGGI 234 (398)
T ss_dssp -BCCCHHHHHHHHHHCCCCCC
T ss_pred -CCCCHHHHHHHHHHHHHHhh
Confidence 25999999999999999996
No 50
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=99.87 E-value=1.6e-21 Score=177.67 Aligned_cols=215 Identities=12% Similarity=0.154 Sum_probs=156.8
Q ss_pred CCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcccccccccCCcceEeccCChhHHHHHH
Q 021726 51 SNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIRK 130 (308)
Q Consensus 51 ~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr 130 (308)
.+++..+.++.+ |||| +.|+.++++|+||+++++|+.++ +.|++|+.... ......+.+++ ..+|+.|+++||
T Consensus 28 ~~p~~~~~~l~~-~gpv---~~~~~~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~-~~~~~~~~~~~-~~~g~~~~~~R~ 100 (411)
T 2jjn_A 28 TALLDWLGTMRE-KQPV---WQDRYGVWHVFRHADVQTVLRDT-ATFSSDPTRVI-EGASPTPGMIH-EIDPPEHRALRK 100 (411)
T ss_dssp HHHHHHHHHHHH-HCSE---EECTTSCEEECSHHHHHHHHHCT-TTEESCGGGGS-TTCCCCTTCGG-GCCTTHHHHHHH
T ss_pred cChHHHHHHHHH-hCCc---ccCCCCeEEECCHHHHHHHHcCc-ccccCcccccC-Ccccccccccc-cCCchHHHHHHH
Confidence 468888999975 9998 67888999999999999999865 47888874321 11111133444 458999999999
Q ss_pred HHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HHHHHHHHHHHHhCCcccccccccchHHHHHHH
Q 021726 131 ICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KSLTSSITCRIGFGKSYEVEDQGISERSRFGAL 209 (308)
Q Consensus 131 ~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~ 209 (308)
++ ++.|+.++++++.+.++++++.+++. . +.++|+.+.+ ..+++++|+.+ ||.+.+ +.. .+.+.
T Consensus 101 ~~-~~~fs~~~l~~~~~~i~~~~~~ll~~-~-----~~~~d~~~~~~~~~~~~vi~~~-fG~~~~--~~~-----~~~~~ 165 (411)
T 2jjn_A 101 VV-SSAFTPRTISDLEPRIRDVTRSLLAD-A-----GESFDLVDVLAFPLPVTIVAEL-LGLPPM--DHE-----QFGDW 165 (411)
T ss_dssp HH-HHHSCHHHHHTTHHHHHHHHHHHHHT-S-----CSEEEHHHHTTTHHHHHHHHHH-HTCCSC--CCS-----TTCCH
T ss_pred Hh-hhhcCHHHHHHHHHHHHHHHHHHHhc-C-----CCceeHHHHHHHHHHHHHHHHH-cCCCHH--HHH-----HHHHH
Confidence 97 89999999999999999999999987 2 4579998555 68999999999 999875 211 12222
Q ss_pred HHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHhhhhcCCCCC
Q 021726 210 LTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQIWKQRGSKVD 289 (308)
Q Consensus 210 ~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~~ 289 (308)
.+.+.... .|.+ + .+...++..++.+.+.+++.++|+++++. ..+|+++.|+++.+++ ..
T Consensus 166 ~~~~~~~~--------~~~~--~--~p~~~~~~~~~~~~~~~~~~~~i~~r~~~-----~~~d~l~~ll~~~~~~---~~ 225 (411)
T 2jjn_A 166 SGALVDIQ--------MDDP--T--DPALAERIADVLNPLTAYLKARCAERRAD-----PGDDLISRLVLAEVDG---RA 225 (411)
T ss_dssp HHHHHHSC--------CSCT--T--CHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CCSSHHHHHHHCCBTT---BC
T ss_pred HHHHHhcc--------Cccc--c--chHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCHHHHHHhcccCC---CC
Confidence 23333211 1211 1 11233456667778888899999988752 2479999999875432 36
Q ss_pred CCHHHHHHHHHHHhhccC
Q 021726 290 ITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 290 ~t~~~i~~~~~~l~~a~~ 307 (308)
+|++++.+++.++++||+
T Consensus 226 l~~~el~~~~~~~~~AG~ 243 (411)
T 2jjn_A 226 LDDEEAANFSTALLLAGH 243 (411)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhh
Confidence 999999999999999985
No 51
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=99.87 E-value=1.7e-21 Score=177.84 Aligned_cols=222 Identities=16% Similarity=0.189 Sum_probs=160.9
Q ss_pred CCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcccccccc--------cCCcceEeccC
Q 021726 50 YSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQKVS--------YNGLDVAFAPY 121 (308)
Q Consensus 50 ~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~~~~--------~~~~~~~~~~~ 121 (308)
..+|+..+.+| ++||||+++++| +++|++|+.+++||.++ ..+++|+......... ..+.+++ ..+
T Consensus 28 ~~~p~~~~~~l-r~~gpv~~~~~g---~~vv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~d 101 (418)
T 3r9b_A 28 RADPYPIYDRI-RRGGPLALPEAN---LAVFSSFSDCDDVLRHP-SSCSDRTKSTIFQRQLAAETQPRPQGPASFL-FLD 101 (418)
T ss_dssp TTCCHHHHHHH-HHHCCEEEGGGT---EEEECSHHHHHHHHHCT-TEECCGGGCHHHHHHHC---------CCCGG-GCC
T ss_pred ccCchHHHHHH-HhcCCEEECCCC---eEEEecHHHHHHHHcCc-ccccCcccccccccccccccccccccccchh-hcC
Confidence 57899999888 688999998887 99999999999999654 4456666432211111 1123444 457
Q ss_pred ChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HHHHHHHHHHHHhCCccccccccc
Q 021726 122 NAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KSLTSSITCRIGFGKSYEVEDQGI 200 (308)
Q Consensus 122 g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~ 200 (308)
|+.|+++||++ ++.|+.++++++.+.+.++++.+++ +. .+.++|+...+ ..+++++++. +||.+.+
T Consensus 102 g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~-l~----~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~------ 168 (418)
T 3r9b_A 102 PPDHTRLRGLV-SKAFAPRVIKRLEPEITALVDQLLD-AV----DGPEFNLIDNLAYPLPVAVICR-LLGVPIE------ 168 (418)
T ss_dssp TTHHHHHHHHH-HGGGSHHHHGGGHHHHHHHHHHHHH-TC----CSSEEEHHHHTTTHHHHHHHHH-HHTCCGG------
T ss_pred CchHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHh-hh----ccCCeehHHHHhCcCCHHHHHH-HcCCCHH------
Confidence 99999999997 8999999999999999999999999 75 24479976555 6899999999 8998775
Q ss_pred chHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHh
Q 021726 201 SERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQI 280 (308)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~ 280 (308)
..+.+....+.+...... ++.+.++. ....++..++.+.+.+++.++++++++. ..+|+++.|+++
T Consensus 169 -~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~i~~r~~~-----~~~d~l~~ll~~ 234 (418)
T 3r9b_A 169 -DEPKFSRASALLAAALDP------FLALTGET--SDLFDEQMKAGMWLRDYLRALIDERRRT-----PGEDLMSGLVAV 234 (418)
T ss_dssp -GHHHHHHHHHHHHHTTSC------HHHHHSSC--CTTHHHHHHHHHHHHHHHHHHHHHTTTS-----CCSSHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhhcCc------cccccccC--HHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCccHHHHHHHh
Confidence 233344444443332211 11111111 1223566778888889999999988753 257999999987
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 281 WKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 281 ~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
.++++ .+|++++.+++.++++||+
T Consensus 235 ~~~~~---~ls~~ei~~~~~~l~~AG~ 258 (418)
T 3r9b_A 235 EESGD---QLTEDEIIATCNLLLIAGH 258 (418)
T ss_dssp HHHSS---SCCHHHHHHHHHHHHHHHH
T ss_pred hhccC---CCCHHHHHHHHHHHHHHhH
Confidence 54443 6999999999999999985
No 52
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=99.87 E-value=3.3e-21 Score=175.28 Aligned_cols=215 Identities=16% Similarity=0.250 Sum_probs=161.8
Q ss_pred CCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCc--c----ccc---cc-cc----CCcc
Q 021726 50 YSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPAL--L----SQQ---KV-SY----NGLD 115 (308)
Q Consensus 50 ~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~--~----~~~---~~-~~----~~~~ 115 (308)
..+++..+.+| ++||||+++++|+.++++|++|+++++|+.++ .|++|+.. . ... .+ .. .+.+
T Consensus 13 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (404)
T 1z8o_A 13 HVDWYRTYAEL-RETAPVTPVRFLGQDAWLVTGYDEAKAALSDL--RLSSDPKKKYPGVEVEFPAYLGFPEDVRNYFATN 89 (404)
T ss_dssp TSSHHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHHCT--TEECCTTCCCTTCCCCCGGGTTCCHHHHHHHSSS
T ss_pred ccCcHHHHHHH-HhcCCeeeecCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccchhhhcccc
Confidence 46799999999 99999999999999999999999999999876 68877643 1 110 11 00 1344
Q ss_pred eEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HHHHHHHHHHHHhCCccc
Q 021726 116 VAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KSLTSSITCRIGFGKSYE 194 (308)
Q Consensus 116 ~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~ 194 (308)
++ ..+|+.|+++||++ ++.|+.+.++++.+.+.++++.+++.|.+ ++++|+.+.+ ..+++++|+.+ ||.+.+
T Consensus 90 l~-~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~vi~~~-~G~~~~ 162 (404)
T 1z8o_A 90 MG-TSDPPTHTRLRKLV-SQEFTVRRVEAMRPRVEQITAELLDEVGD----SGVVDIVDRFAHPLPIKVICEL-LGVDEK 162 (404)
T ss_dssp GG-GCCTTHHHHHHHHH-HTTSCHHHHHHTHHHHHHHHHHHHHTSCS----SSEEEHHHHTTTHHHHHHHHHH-TTCCGG
T ss_pred cc-cCCCcHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHhhhh----cCCcchHHHHhHHHHHHHHHHH-hCCCHH
Confidence 44 45899999999997 89999999999999999999999998862 5689998766 68999999985 998765
Q ss_pred ccccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHH
Q 021726 195 VEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIV 274 (308)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll 274 (308)
+ .+.+....+.++. . . .| . .++..++.+.+.+++.++|+++++. ..+|++
T Consensus 163 --~-----~~~~~~~~~~~~~-~---~----~p---------~-~~~~~~~~~~~~~~~~~~i~~r~~~-----~~~dll 212 (404)
T 1z8o_A 163 --Y-----RGEFGRWSSEILV-M---D----PE---------R-AEQRGQAAREVVNFILDLVERRRTE-----PGDDLL 212 (404)
T ss_dssp --G-----TTTHHHHHHHHHC-C---C----GG---------G-HHHHHHHHHHHHHHHHHHHHHHHHS-----CCSSHH
T ss_pred --H-----HHHHHHHHHHHhc-c---C----Ch---------h-HHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCHH
Confidence 1 1223333333332 1 0 01 1 2455567777888888999888752 246999
Q ss_pred HHHHHh-hhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 275 DVLLQI-WKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 275 ~~ll~~-~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
+.|+++ .+++ ..+|++++.+++.++++||+
T Consensus 213 ~~ll~~~~~~~---~~l~~~ei~~~~~~~~~AG~ 243 (404)
T 1z8o_A 213 SALIRVQDDDD---GRLSADELTSIALVLLLAGF 243 (404)
T ss_dssp HHHHHCEETTT---EECCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccC---CCCCHHHHHHHHHHHHhcch
Confidence 999987 4322 25999999999999999985
No 53
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=99.87 E-value=2.3e-21 Score=177.13 Aligned_cols=221 Identities=14% Similarity=0.131 Sum_probs=163.2
Q ss_pred CCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCC-----cc-c--ccccccC-CcceEecc
Q 021726 50 YSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPA-----LL-S--QQKVSYN-GLDVAFAP 120 (308)
Q Consensus 50 ~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~-----~~-~--~~~~~~~-~~~~~~~~ 120 (308)
..+++..+.+| ++||||++ + |+.+++||+||+++++||.++. |++|+. .. . ...+... +.+++ ..
T Consensus 25 ~~~p~~~~~~l-~~~Gpv~~-~-~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~ 98 (419)
T 1q5d_A 25 AEDPFPAIERL-REATPIFY-W-DEGRSWVLTRYHDVSAVFRDER--FAVSREEWESSAEYSSAIPELSDMKKYGLF-GL 98 (419)
T ss_dssp TTCCHHHHHHH-HHHCSEEE-E-TTTTEEEECSHHHHHHHHTCTT--EECCGGGSTTHHHHHHSSGGGHHHHHHSTT-TS
T ss_pred hhChHHHHHHH-HhhCCccc-c-CCCCEEEEecHHHHHHHHcCCC--ccccccccccccccccccchhhhhcccccc-cC
Confidence 46899999999 78999999 6 7789999999999999998774 988872 11 1 1111100 23344 45
Q ss_pred CChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HHHHHHHHHHHHhCCcccccccc
Q 021726 121 YNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KSLTSSITCRIGFGKSYEVEDQG 199 (308)
Q Consensus 121 ~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~ 199 (308)
+|+.|+++||++ ++.|+.++++++.+.+.++++.+++.|.+ +.++|+...+ ..+++++|+.+ ||.+.+
T Consensus 99 ~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~d~~~~~~~~~~~~vi~~~-fG~~~~----- 167 (419)
T 1q5d_A 99 PPEDHARVRKLV-NPSFTSRAIDLLRAEIQRTVDQLLDARSG----QEEFDVVRDYAEGIPMRAISAL-LKVPAE----- 167 (419)
T ss_dssp CHHHHHHHHHHH-GGGGSHHHHGGGHHHHHHHHHHHHHHHTT----SSCEETTTTTGGGSHHHHHHHH-TTCCGG-----
T ss_pred CchHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHHHH-hCCCHH-----
Confidence 899999999997 89999999999999999999999999973 2379987654 89999999998 998775
Q ss_pred cchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCC-cHHHHHH
Q 021726 200 ISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQE-DIVDVLL 278 (308)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-dll~~ll 278 (308)
..+.+....+.+..... ...+|+.. . ..++..+..+.+.+++.++|+++++. ..+ |+++.|+
T Consensus 168 --~~~~~~~~~~~~~~~~~----~~~~P~~~-----~-~~~~~~~~~~~~~~~~~~~i~~r~~~-----~~~~dll~~ll 230 (419)
T 1q5d_A 168 --CDEKFRRFGSATARALG----VGLVPRVD-----E-ETKTLVASVTEGLALLHGVLDERRRN-----PLENDVLTMLL 230 (419)
T ss_dssp --GHHHHHHHHHHHHHHTT----TTTSSCCC-----S-CHHHHHHHHHHHHHHHHHHHHHHHHS-----CCSSCHHHHHH
T ss_pred --HHHHHHHHHHHHHHhcc----cccccCCh-----H-HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCCHHHHHH
Confidence 22344444444443221 11234321 1 12455667778888899999988752 235 9999999
Q ss_pred HhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 279 QIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 279 ~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
++.+++ ..+|++++.+++.++++||+
T Consensus 231 ~~~~~~---~~l~~~ei~~~~~~l~~AG~ 256 (419)
T 1q5d_A 231 QAEADG---SRLSTKELVALVGAIIAAGT 256 (419)
T ss_dssp HHHHSS---TTCCHHHHHHHHHHHHHHHS
T ss_pred hhhccC---CCCCHHHHHHHHHHHHHHhh
Confidence 875433 36999999999999999996
No 54
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=99.87 E-value=1.9e-20 Score=171.38 Aligned_cols=221 Identities=15% Similarity=0.163 Sum_probs=157.8
Q ss_pred CCCchHHHHHHHHhhCCeEEEEeC--CcCEEEecCHHHHHHHHHhcCccCCCCCCc--------c-ccc----ccc-cCC
Q 021726 50 YSNPQNYFWRLSKQYGPMVSLRLG--SVPILVVSSAKMAEEVLKTHDLQFCSRPAL--------L-SQQ----KVS-YNG 113 (308)
Q Consensus 50 ~~~~~~~~~~~~~~YG~v~~~~~g--~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~--------~-~~~----~~~-~~~ 113 (308)
..+++..+.++. +||||+++++| +.++++|+||+++++||.++ .|++||.. . ... ... ..+
T Consensus 19 ~~~p~~~~~~l~-~~Gpv~~~~~g~~~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (425)
T 2z3t_A 19 IADPYPVYRRYR-EAAPVHRTASGPGKPDTYYVFTYDDVVRVLSNR--RLGRNARVASGDTDTAPVPIPTEHRALRTVVE 95 (425)
T ss_dssp HHCCHHHHHHHH-HHCSEEEECCCSSCCCEEEECSHHHHHHHHHCT--TEESSCCCC---------------CHHHHHHT
T ss_pred hcChHHHHHHHH-hcCCeEeccccCCCCCeEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccccccccc
Confidence 357888998886 59999999998 78999999999999999865 78888642 1 000 010 112
Q ss_pred cceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HHHHHHHHHHHHhCCc
Q 021726 114 LDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KSLTSSITCRIGFGKS 192 (308)
Q Consensus 114 ~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~ 192 (308)
.++++ .+|+.|+++||++ ++.|+.++++++.+.+.++++++++.|.+ .| ++|+.+.+ ..+++++|+.+ ||.+
T Consensus 96 ~~l~~-~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~g-~~dl~~~~~~~~~~~vi~~~-~G~~ 168 (425)
T 2z3t_A 96 NWLVF-LDPPHHTELRSLL-TTEFSPSIVTGLRPRIAELASALLDRLRA---QR-RPDLVEGFAAPLPILVISAL-LGIP 168 (425)
T ss_dssp TCGGG-CCHHHHHHHHHHH-HGGGSHHHHHHHHHHHHHHHHHHHHHHTT---SS-SCBHHHHTTTHHHHHHHHHH-HTCC
T ss_pred ccccc-CCchHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHh---cC-CccHHHHHHHHHHHHHHHHH-hCCC
Confidence 44544 4799999999997 89999999999999999999999999973 23 79998755 78999999998 9987
Q ss_pred ccccccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCc
Q 021726 193 YEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQED 272 (308)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d 272 (308)
.+ ..+.+....+.+.... +.+| + . ....++..++.+.+.+++.++|+++++. ..+|
T Consensus 169 ~~-------~~~~~~~~~~~~~~~~------~~~~-~---~--~~~~~~~~~~~~~~~~~~~~~i~~r~~~-----~~~d 224 (425)
T 2z3t_A 169 EE-------DHTWLRANAVALQEAS------TTRA-R---D--GRGYARAEAASQEFTRYFRREVDRRGGD-----DRDD 224 (425)
T ss_dssp GG-------GHHHHHHHHHHHHTTC------TTCC-C--------HHHHHHHHHHHHHHHHHHHHCC------------C
T ss_pred HH-------HHHHHHHHHHHHHhhc------cccC-C---C--HHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCC
Confidence 75 1233444444333211 1122 1 1 1123455667777888888888776642 2479
Q ss_pred HHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 273 IVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 273 ll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
+++.|+++.+++ ..+|++++.+++.++++||+
T Consensus 225 ll~~ll~~~~~~---~~ls~~el~~~~~~l~~AG~ 256 (425)
T 2z3t_A 225 LLTLLVRARDTG---SPLSVDGIVGTCVHLLTAGH 256 (425)
T ss_dssp HHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhccC---CCCCHHHHHHHHHHHHHhhh
Confidence 999999876543 36999999999999999996
No 55
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.86 E-value=8.1e-21 Score=173.07 Aligned_cols=215 Identities=15% Similarity=0.213 Sum_probs=159.6
Q ss_pred CCCchHHHHHHHHhhCCeEEEEe-CCcCEEEecCHHHHHHHHHhcCccCCCCC-Cccccc--cccc--------C-Ccce
Q 021726 50 YSNPQNYFWRLSKQYGPMVSLRL-GSVPILVVSSAKMAEEVLKTHDLQFCSRP-ALLSQQ--KVSY--------N-GLDV 116 (308)
Q Consensus 50 ~~~~~~~~~~~~~~YG~v~~~~~-g~~~~vvi~~pe~ikevl~~~~~~f~~Rp-~~~~~~--~~~~--------~-~~~~ 116 (308)
..+++..+.+| ++||||+++++ |+.++++|+||+++++||.++. ++.++ .+.... .... . +.++
T Consensus 16 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (411)
T 1gwi_A 16 VTDLDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPR--LVKDINVWGAWRRGEIPADWPLIGLANPGRSM 92 (411)
T ss_dssp CSCHHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTT--EECCGGGCHHHHTTCSCTTCTTHHHHSCCSSG
T ss_pred cCChHHHHHHH-HHhCCeeeeecCCCccEEEEeCHHHHHHHHcCCc--cccCcccccccccccCCcccchhhhhcccccc
Confidence 56899999999 99999999998 8999999999999999998654 44443 111000 0000 1 2344
Q ss_pred EeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHH-HHHHHHHHHHHhCCcccc
Q 021726 117 AFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMK-SLTSSITCRIGFGKSYEV 195 (308)
Q Consensus 117 ~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~-~~t~~vi~~~~fG~~~~~ 195 (308)
+..+|+.|+++||++ ++.|+.++++++.+.+.++++.+++.|.+ .++++|+.+.+. .+++++|+. +||.+.+
T Consensus 93 -~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~- 165 (411)
T 1gwi_A 93 -LTVDGAEHRRLRTLV-AQALTVRRVEHMRGRITELTDRLLDELPA---DGGVVDLKAAFAYPLPMYVVAD-LMGIEEA- 165 (411)
T ss_dssp -GGCCHHHHHHHHHHH-TTTSCHHHHHTTHHHHHHHHHHHHHTSCC---SCCCEEHHHHTTTHHHHHHHHH-HHTCCGG-
T ss_pred -ccCCcHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHH---cCCCcchHHHHhhHHHHHHHHH-HhCCCHH-
Confidence 456899999999997 89999999999999999999999999862 367899998886 599999996 6998765
Q ss_pred cccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHH
Q 021726 196 EDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVD 275 (308)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~ 275 (308)
..+.+......++.. . . . .++..++.+.+.+++.++|+++++. ..+|+++
T Consensus 166 ------~~~~~~~~~~~~~~~-----------~---~---~--~~~~~~~~~~~~~~~~~~i~~r~~~-----~~~d~l~ 215 (411)
T 1gwi_A 166 ------RLPRLKVLFEKFFST-----------Q---T---P--PEEVVATLTELASIMTDTVAAKRAA-----PGDDLTS 215 (411)
T ss_dssp ------GHHHHHHHHHHHHCT-----------T---S---C--HHHHHHHHHHHHHHHHHHHHHHHHS-----CCSSHHH
T ss_pred ------HHHHHHHHHHHHhcc-----------C---C---C--hHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCHHH
Confidence 233444443333320 0 0 0 1345556777888888889888752 2479999
Q ss_pred HHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 276 VLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 276 ~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
.|+++.+++ ..+|++++.+++.++++||+
T Consensus 216 ~ll~~~~~~---~~l~~~~i~~~~~~~~~AG~ 244 (411)
T 1gwi_A 216 ALIQASENG---DHLTDAEIVSTLQLMVAAGH 244 (411)
T ss_dssp HHHHCCBTT---BCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccC---CCCCHHHHHHHHHHHHHHHh
Confidence 999875432 36999999999999999985
No 56
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=99.86 E-value=1.8e-20 Score=170.00 Aligned_cols=215 Identities=12% Similarity=0.110 Sum_probs=160.3
Q ss_pred CCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcccccccccCCcceEeccCChhHHHHH
Q 021726 50 YSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIR 129 (308)
Q Consensus 50 ~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~R 129 (308)
..+++..+.++.+ ||||+++. . ++++|+||+++++|+.++. .|++++... .... .+.+++ ..+|+.|+++|
T Consensus 17 ~~~p~~~~~~l~~-~Gpv~~~~--~-~~vvv~~~~~v~~vl~~~~-~f~~~~~~~-~~~~--~~~~l~-~~~g~~h~~~R 87 (398)
T 2xkr_A 17 SREARAAYRWMRA-NQPVFRDR--N-GLAAASTYQAVIDAERQPE-LFSNAGGIR-PDQP--ALPMMI-DMDDPAHLLRR 87 (398)
T ss_dssp CTTHHHHHHHHHH-HCSEEECT--T-CCEEECSHHHHHHHHTCTT-TEESTTCSS-TTSC--CCSSGG-GCCTTHHHHHH
T ss_pred ccChhHHHHHHHh-cCCeeecC--C-CeEEEecHHHHHHHHhCcc-cccCccccC-Cccc--cccccc-ccCchHHHHHH
Confidence 3578999999986 99998554 3 8999999999999997654 788887432 1122 133444 45799999999
Q ss_pred HHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHH-HHHHHHHHHHHHHhCCcccccccccchHHHHHH
Q 021726 130 KICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSEL-MKSLTSSITCRIGFGKSYEVEDQGISERSRFGA 208 (308)
Q Consensus 130 r~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~-~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~ 208 (308)
|++ ++.|+.++++++.+.+.++++++++.|.+ +.++|+... ...+++++|+.+ ||.+.+ ..+.+..
T Consensus 88 ~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~vi~~~-fG~~~~-------~~~~~~~ 154 (398)
T 2xkr_A 88 KLV-NAGFTRKRVKDKEASIAALCDTLIDAVCE----RGECDFVRDLAAPLPMAVIGDM-LGVRPE-------QRDMFLR 154 (398)
T ss_dssp HHH-GGGSCHHHHHTTHHHHHHHHHHHHHTTTT----TSEEEHHHHTTTHHHHHHHHHH-HTCCGG-------GHHHHHH
T ss_pred HHh-hhhhCHHHHHHHHHHHHHHHHHHHHhhhh----cCCccHHHHHHHHHHHHHHHHH-hCCCHH-------HHHHHHH
Confidence 997 89999999999999999999999999863 347999855 468999999999 999875 2234444
Q ss_pred HHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHhhhhcCCCC
Q 021726 209 LLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQIWKQRGSKV 288 (308)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~ 288 (308)
....+.... .|.+ .+...++..++.+.+.+++.++++++++. ..+|+++.|+++..++ .
T Consensus 155 ~~~~~~~~~--------~~~~-----~p~~~~~~~~~~~~~~~~~~~~i~~r~~~-----~~~dll~~ll~~~~~~---~ 213 (398)
T 2xkr_A 155 WSDDLVTFL--------SSHV-----SQEDFQITMDAFAAYNDFTRATIAARRAD-----PTDDLVSVLVSSEVDG---E 213 (398)
T ss_dssp HHHHHHHHH--------TSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CCSSHHHHHHHCCBTT---B
T ss_pred HHHHHHhcc--------Cccc-----chhhHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCHHHHHHHhhccC---C
Confidence 444443321 1211 11223456667778888899999988752 2479999999875432 3
Q ss_pred CCCHHHHHHHHHHHhhccC
Q 021726 289 DITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 289 ~~t~~~i~~~~~~l~~a~~ 307 (308)
.+|++++.+.+.++++||+
T Consensus 214 ~ls~~ei~~~~~~l~~AG~ 232 (398)
T 2xkr_A 214 RLSDDELVMETLLILIGGD 232 (398)
T ss_dssp CCCHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHhh
Confidence 6999999999999999996
No 57
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=99.86 E-value=9e-22 Score=183.30 Aligned_cols=163 Identities=12% Similarity=0.167 Sum_probs=124.1
Q ss_pred CCCCCCCCCCCCcccccccCCC----CCCchHHHHHHHHhhCC-eEEEEeCCcCE-------EEecCHHHHHHHHHhc--
Q 021726 28 KSIALPPGPRGLPFIGNLHQFD----YSNPQNYFWRLSKQYGP-MVSLRLGSVPI-------LVVSSAKMAEEVLKTH-- 93 (308)
Q Consensus 28 ~~~~lpPGP~~~P~lGn~~~~~----~~~~~~~~~~~~~~YG~-v~~~~~g~~~~-------vvi~~pe~ikevl~~~-- 93 (308)
.+.+.||||+|||++||++++. .++++.++.++.++||+ ||++++|+.++ |++++++..+.++...
T Consensus 25 ~p~~~pPGp~g~P~iG~~~~~~~~~~~~~~~~f~~~~~~kyG~~Vf~~~l~~~~~vv~~p~~v~~~~~~~~~~l~~~~~v 104 (495)
T 3dsk_A 25 LPIRNIPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLFDVDKV 104 (495)
T ss_dssp CCBCCCCCCCCSTTHHHHHHHHHHHTTSCHHHHHHHHHHHHTCSEEEEECSCCTTTCSCCEEEEECSTTTGGGGGCTTTE
T ss_pred CCCCCCCCCCCCCccchHHHHHHHHHhcCcHHHHHHHHHHhCCceEeecCCCCCCccCCCCEEEEeCCcceeeecccccc
Confidence 3456899999999999997763 46899999999999999 99999999988 6667776665544321
Q ss_pred --CccCC-CCCCcccccccccCCcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcc
Q 021726 94 --DLQFC-SRPALLSQQKVSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPV 170 (308)
Q Consensus 94 --~~~f~-~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~v 170 (308)
.+.+. ..|... ..+...+...++..+|+.|+++||++ .+.|+... +.+.+.++++++.+++.|.+...++.++
T Consensus 105 ~k~~~~~~~~~~~~--~l~g~~~~~~~~~~~g~~h~~~R~~~-~~~f~~~~-~~~~~~i~~~~~~ll~~~~~~~~~~~~v 180 (495)
T 3dsk_A 105 EKKDLLTGTYMPST--ELTGGYRILSYLDPSEPKHEKLKNLL-FFLLKSSR-NRIFPEFQATYSELFDSLEKELSLKGKA 180 (495)
T ss_dssp ECSSCTTSSSCCCG--GGGTTCCCGGGCCTTSHHHHHHHHHH-HHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHHHSSE
T ss_pred cccccccccCCCCc--cccCCCcceeeeCCCchHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 12232 233221 22221122334445899999999996 78888754 8899999999999999997533345689
Q ss_pred cHHHHHHHHHHHHHHHHHhCCccc
Q 021726 171 NLSELMKSLTSSITCRIGFGKSYE 194 (308)
Q Consensus 171 d~~~~~~~~t~~vi~~~~fG~~~~ 194 (308)
|+.+.+.+++++++++++||.+.+
T Consensus 181 dl~~~~~~~~~~~i~~~~~G~~~~ 204 (495)
T 3dsk_A 181 DFGGSSDGTAFNFLARAFYGTNPA 204 (495)
T ss_dssp ESHHHHHHHHHHHHHHHHHSCCGG
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcc
Confidence 999999999999999999999886
No 58
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=99.86 E-value=2.3e-20 Score=170.54 Aligned_cols=219 Identities=12% Similarity=0.101 Sum_probs=160.3
Q ss_pred CCchHHHHHHHHhhC-CeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcccccccccCCcceEeccCChhHHHHH
Q 021726 51 SNPQNYFWRLSKQYG-PMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIR 129 (308)
Q Consensus 51 ~~~~~~~~~~~~~YG-~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~R 129 (308)
.+|+..+.++.+++| ||+++..|+ ++++|+||+.+++|+ ++.+.|++++...........+.+ ++..+|+.|+++|
T Consensus 38 ~dp~~~~~~lr~~~G~pv~~~~~~~-~~~vv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~~~~~~~-~~~~dg~~h~~~R 114 (421)
T 3lxh_A 38 QGFHEAWKRVQQPDTPPLVWTPFTG-GHWIATRGTLIDEIY-RSPERFSSRVIWVPREAGEAYDMV-PTKLDPPEHTPYR 114 (421)
T ss_dssp GCHHHHHHHHCCTTCCSEEEESSTT-SEEEECSHHHHHHHH-TCTTTEETTCCSSSHHHHHHCCCT-TTTCCTTTHHHHH
T ss_pred cChhHHHHHHHhcCCCCeEeccCCC-CeEEEcCHHHHHHHH-cChhhccCCcccCCcccccccccC-CccCCcHHHHHHH
Confidence 578899988876655 899999876 599999999999999 455689888743221111111223 3455899999999
Q ss_pred HHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HHHHHHHHHHHHhCCcccccccccchHHHHHH
Q 021726 130 KICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KSLTSSITCRIGFGKSYEVEDQGISERSRFGA 208 (308)
Q Consensus 130 r~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~ 208 (308)
|++ ++.|+.+.++++.+.+.++++.+++.|.. +.++|+...+ ..++.++++. +||.+.+ ..+.+.+
T Consensus 115 ~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~v~~~-~~G~~~~-------~~~~~~~ 181 (421)
T 3lxh_A 115 KAI-DKGLNLAEIRKLEDQIRTIAVEIIEGFAD----RGHCEFGSEFSTVFPVRVFLA-LAGLPVE-------DATKLGL 181 (421)
T ss_dssp HHH-HHHHSHHHHHTTHHHHHHHHHHHHHTTTT----TSEEEHHHHTTTTHHHHHHHH-HHTCCGG-------GHHHHHH
T ss_pred HHH-hhhcCHHHHHHHHHHHHHHHHHHHHHHhh----cCCeehHHHHHHHHHHHHHHH-HcCCCHH-------HHHHHHH
Confidence 996 89999999999999999999999999863 4468876555 6678888876 4897665 2334444
Q ss_pred HHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHhhhhcCCCC
Q 021726 209 LLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQIWKQRGSKV 288 (308)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~ 288 (308)
....++.... .+| ....++..+..+.+.+++.++++++++. ..+|+++.|+++..++ .
T Consensus 182 ~~~~~~~~~~------~~p--------~~~~~~~~~~~~~~~~~~~~~i~~r~~~-----~~~dll~~ll~~~~~~---~ 239 (421)
T 3lxh_A 182 LANEMTRPSG------NTP--------EEQGRSLEAANKGFFEYVAPIIAARRGG-----SGTDLITRILNVEIDG---K 239 (421)
T ss_dssp HHHHHHSCCC------SSH--------HHHHHHHHHHHHHHHHHHHHHHHHHTTC-----CCCSHHHHHHTSCBTT---B
T ss_pred HHHHHhcccc------CCC--------chhHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCHHHHHHhhhccC---C
Confidence 4444332111 111 1123566778888899999999998763 3579999999875533 3
Q ss_pred CCCHHHHHHHHHHHhhccC
Q 021726 289 DITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 289 ~~t~~~i~~~~~~l~~a~~ 307 (308)
.+|++++..++.++++||+
T Consensus 240 ~l~~~ei~~~~~~l~~AG~ 258 (421)
T 3lxh_A 240 PMPDDRALGLVSLLLLGGL 258 (421)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhH
Confidence 6999999999999999985
No 59
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=99.85 E-value=2.4e-20 Score=170.11 Aligned_cols=216 Identities=17% Similarity=0.146 Sum_probs=157.2
Q ss_pred CCchHHHHHHHHhhCCeE-----EEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcc-ccc--cc-c-cCCcceEecc
Q 021726 51 SNPQNYFWRLSKQYGPMV-----SLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALL-SQQ--KV-S-YNGLDVAFAP 120 (308)
Q Consensus 51 ~~~~~~~~~~~~~YG~v~-----~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~-~~~--~~-~-~~~~~~~~~~ 120 (308)
.+|+..+.+|. +||||+ ++++ .+++||+||+++++||.++ ..|++++... ... .+ . ..+.++++ .
T Consensus 25 ~~p~~~~~~l~-~~Gpv~~~~~~~~~~--~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~l~~-~ 99 (414)
T 2uuq_A 25 PNPWPMYRALR-DHDPVHHVVPPQRPE--YDYYVLSRHADVWSAARDH-QTFSSAQGLTVNYGELEMIGLHDTPPMVM-Q 99 (414)
T ss_dssp TCCHHHHHHHH-HHCSEEEECCTTCGG--GCEEEECSHHHHHHHHHCT-TTEESTTCSSSCTTHHHHHTCSSSCCGGG-C
T ss_pred cCchHHHHHHH-hcCCEEcccccccCC--CCEEEEcCHHHHHHHHcCc-hhccCCCCcccccCccccccccccccccc-C
Confidence 57888998884 799999 8777 6899999999999999876 6788887542 111 22 1 12345554 4
Q ss_pred CChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHH-HHHHHHHHHHHHHHHhCCcccccccc
Q 021726 121 YNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLS-ELMKSLTSSITCRIGFGKSYEVEDQG 199 (308)
Q Consensus 121 ~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~-~~~~~~t~~vi~~~~fG~~~~~~~~~ 199 (308)
+|+.|+++||++ ++.|+.++++++.+.+.++++.+++.|.+ +.++|+. +.+..+++++|+. +||.+.+
T Consensus 100 ~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~vdl~~~~~~~~~~~vi~~-~~G~~~~----- 168 (414)
T 2uuq_A 100 DPPVHTEFRKLV-SRGFTPRQVETVEPTVRKFVVERLEKLRA----NGGGDIVTELFKPLPSMVVAH-YLGVPEE----- 168 (414)
T ss_dssp CTTHHHHHHHHH-HTTSSHHHHHHHHHHHHHHHHHHHHHHHH----TTEEEHHHHTTTHHHHHHHHH-HTTCCGG-----
T ss_pred CchhHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHh----cCCccHHHHHHHHhHHHHHHH-HhCCCHH-----
Confidence 899999999997 89999999999999999999999999974 2369997 4567999999999 6998775
Q ss_pred cchHHHHHHHHHHHHhccccccccccc-cccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHH
Q 021726 200 ISERSRFGALLTETQALVVGFFVTDYF-PSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLL 278 (308)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll 278 (308)
..+.+....+.+... .++ |... +..++.+.+.+++.++|+++++. ..+|+++.|+
T Consensus 169 --~~~~~~~~~~~~~~~-------~~~~p~~~----------~~~~~~~~~~~~~~~~i~~r~~~-----~~~dll~~ll 224 (414)
T 2uuq_A 169 --DWTQFDGWTQAIVAA-------NAVDGATT----------GALDAVGSMMAYFTGLIERRRTE-----PADDAISHLV 224 (414)
T ss_dssp --GHHHHHHHHHHHHHH-------HHC---------------CCHHHHHHHHHHHHHHHHHHTTS-----CCSSHHHHHH
T ss_pred --HHHHHHHHHHHHHhh-------cccCCchh----------HHHHHHHHHHHHHHHHHHHHHhC-----CCCCHHHHHH
Confidence 123344433333321 112 2211 12335566777888888888753 2479999999
Q ss_pred HhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 279 QIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 279 ~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
++..++ ++..+|++++.+++.++++||+
T Consensus 225 ~~~~~~-~~~~ls~~ei~~~~~~l~~AG~ 252 (414)
T 2uuq_A 225 AAGVGA-DGDTAGTLSILAFTFTMVTGGN 252 (414)
T ss_dssp HTTTTC-TTCHHHHHHHHHHHHHHHHHHS
T ss_pred hccccc-CCCCCCHHHHHHHHHHHHHhhH
Confidence 875411 1135899999999999999996
No 60
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=99.84 E-value=1.5e-19 Score=164.31 Aligned_cols=209 Identities=16% Similarity=0.212 Sum_probs=155.6
Q ss_pred CCCchHHHHHHHHhhCCeEEEEe-CCcCEEEecCHHHHHHHHHhcCccCCCCCCccc-ccccccCCcce-EeccCC----
Q 021726 50 YSNPQNYFWRLSKQYGPMVSLRL-GSVPILVVSSAKMAEEVLKTHDLQFCSRPALLS-QQKVSYNGLDV-AFAPYN---- 122 (308)
Q Consensus 50 ~~~~~~~~~~~~~~YG~v~~~~~-g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~-~~~~~~~~~~~-~~~~~g---- 122 (308)
..+++..+.+| ++||||+++++ |+.++++|+||+++++|+.++ .|++++.... ...... +.+. ++..+|
T Consensus 25 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~-~~~~~l~~~~g~~~~ 100 (404)
T 2xbk_A 25 MLKLSPLLRAL-QDRGPIHRVRTPAGDEAWLVTRHAELKQLLHDE--RIGRTHPDPPSAAQYVR-SPFLDLLISDADAES 100 (404)
T ss_dssp TTBCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHTTCT--TEESBCSSGGGSCCSSC-CHHHHTTCBCSCHHH
T ss_pred ccCccHHHHHH-HhhCCEeeeccCCCceEEEEcCHHHHHHHHcCC--CCCCCccccccCCcccc-cccccceeeCCCCCC
Confidence 45789999999 89999999997 899999999999999999865 4776654321 111111 3341 344579
Q ss_pred --hhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HHHHHHHHHHHHhCCcccccccc
Q 021726 123 --AYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KSLTSSITCRIGFGKSYEVEDQG 199 (308)
Q Consensus 123 --~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~ 199 (308)
+.|+++||++ ++.|+.++++++.+.+.++++++++.|.. .|+++|+.+.+ ..+++++++. +||.+.+
T Consensus 101 ~~~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~g~~~d~~~~~~~~~~~~vi~~-~~G~~~~----- 170 (404)
T 2xbk_A 101 GRRQHAETRRLL-TPLFSARRVLEMQPKVEEAADTLLDAFIA---QGPPGDLHGELTVPFALTVLCE-VIGVPPQ----- 170 (404)
T ss_dssp HHHHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHH---TCSSEEHHHHTHHHHHHHHHHH-HHTCCGG-----
T ss_pred CCchHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCeeHHHHHHHHHHHHHHHH-HhCCCHH-----
Confidence 9999999996 89999999999999999999999999973 36689998766 5699999998 7998765
Q ss_pred cchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHH
Q 021726 200 ISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQ 279 (308)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~ 279 (308)
..+.+......+... .. . + +..++.+.+.+++.++++++++. ..+|+++.| +
T Consensus 171 --~~~~~~~~~~~~~~~------------~~----~-p---~~~~~~~~~~~~~~~~i~~r~~~-----~~~dll~~l-~ 222 (404)
T 2xbk_A 171 --RRAELTTLLAGIAKL------------DD----R-E---GAVRAQDDLFGYVAGLVEHKRAE-----PGPDIISRL-N 222 (404)
T ss_dssp --GHHHHHHHHHHHTBS------------SC----H-H---HHHHHHHHHHHHHHHHHHHHHHS-----CCSSHHHHH-H
T ss_pred --HHHHHHHHHHHHHhc------------cC----c-H---HHHHHHHHHHHHHHHHHHHHHhC-----CCCCHHHHh-h
Confidence 223343333332211 00 0 1 34456677778888888888753 246999998 2
Q ss_pred hhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 280 IWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 280 ~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
+ + .+|++++.+++.++++||+
T Consensus 223 ---~-~---~ls~~ei~~~~~~l~~AG~ 243 (404)
T 2xbk_A 223 ---D-G---ELTEDRVAHLAMGLLFAGL 243 (404)
T ss_dssp ---S-S---SCCHHHHHHHHHHHHHHTT
T ss_pred ---c-C---CCCHHHHHHHHHHHHHhch
Confidence 1 1 5999999999999999996
No 61
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=99.84 E-value=3.8e-20 Score=168.61 Aligned_cols=213 Identities=11% Similarity=0.086 Sum_probs=156.7
Q ss_pred CCCchHHHHHHHHhhCCeEEEEeCC--cCEEEecCHHHHHHHHHhcCccCCCCCCccc----ccccccC-CcceEeccCC
Q 021726 50 YSNPQNYFWRLSKQYGPMVSLRLGS--VPILVVSSAKMAEEVLKTHDLQFCSRPALLS----QQKVSYN-GLDVAFAPYN 122 (308)
Q Consensus 50 ~~~~~~~~~~~~~~YG~v~~~~~g~--~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~----~~~~~~~-~~~~~~~~~g 122 (308)
+.++|..+.++. +||||+++++++ .+.++|++|+.+++||.+ ..|++++.... ...+... +.++ +..+|
T Consensus 26 g~~p~~~~~~l~-~~Gpv~~~~~~~g~~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~l-~~~dg 101 (411)
T 2dkk_A 26 GPEFDPVLAELM-REGPLTRVRLPHGEGWAWLATRYDDVKAITND--PRFGRAEVTQRQITRLAPHFKPRPGSL-AFADQ 101 (411)
T ss_dssp SSCCCHHHHHHH-TTCSEEEEECSBSBSCEEEECSHHHHHHHTTC--TTEESGGGGGSCBCBSSSCCCCCTTCS-TTCCT
T ss_pred cccccHHHHHHH-hcCCeEeeecCCCceeEEEEcCHHHHHHHHcC--CCcccCCCCCCCccccccchhcccccc-ccCCc
Confidence 567888898886 899999999865 899999999999999976 36776653221 1111111 3344 45589
Q ss_pred hhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHH-HHHHHHHHHHHhCCcccccccccc
Q 021726 123 AYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMK-SLTSSITCRIGFGKSYEVEDQGIS 201 (308)
Q Consensus 123 ~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~-~~t~~vi~~~~fG~~~~~~~~~~~ 201 (308)
+.|+++||++ ++.|+.++++++.+.+.++++++++.|.. .|+++|+.+.+. .+++++|+. +||.+.+
T Consensus 102 ~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~dl~~~~~~~~~~~vi~~-l~G~~~~------- 169 (411)
T 2dkk_A 102 PDHNRLRRAV-AGAFTVGATKRLRPRAQEILDGLVDGILA---EGPPADLVERVLEPFPIAVVSE-VMGVPAA------- 169 (411)
T ss_dssp THHHHHHHHH-GGGSSHHHHHHHHHHHHHHHHHHHHHHHH---HCSCEEHHHHTTTHHHHHHHHH-HHTCCSS-------
T ss_pred hHHHHHHHHh-hHhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCeehHHHHHHHHHHHHHHH-HhCCCHH-------
Confidence 9999999996 89999999999999999999999999974 256899997775 699999999 5998765
Q ss_pred hHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHhh
Q 021726 202 ERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQIW 281 (308)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~~ 281 (308)
..+.+... ..... ...+ . .++..++.+.+.+++.++|+++++. ..+|+++.|+++
T Consensus 170 ~~~~~~~~----~~~~~-----~~~~-----~-----~~~~~~~~~~l~~~~~~~i~~r~~~-----~~~dll~~ll~~- 224 (411)
T 2dkk_A 170 DRERVHSW----TRQII-----STSG-----G-----AEAAERAKRGLYGWITETVRARAGS-----EGGDVYSMLGAA- 224 (411)
T ss_dssp HHHHHHHH----HGGGC-----SSCS-----C-----SHHHHHHHHHHHHHHHHHHHTTTTC-----CSSCHHHHHHHH-
T ss_pred HHHHHHHH----HHHHH-----hccc-----h-----HHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCHHHHHHHh-
Confidence 22233222 11110 1111 0 1344556777888888888887653 246999999987
Q ss_pred hhcCCCCCCCHHHHHHHHHHHhhcc
Q 021726 282 KQRGSKVDITWDHIKAVLMVKFHNQ 306 (308)
Q Consensus 282 ~~~~~~~~~t~~~i~~~~~~l~~a~ 306 (308)
+++ ..+|++++.+++.++++||
T Consensus 225 ~~~---~~ls~~el~~~~~~l~~AG 246 (411)
T 2dkk_A 225 VGR---GEVGETEAVGLAGPLQIGG 246 (411)
T ss_dssp HHT---TSSCTTSHHHHHHHHHHTH
T ss_pred cCC---CCCCHHHHHHHHHHHHHhh
Confidence 433 2699999999999999997
No 62
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=99.84 E-value=1.7e-20 Score=172.39 Aligned_cols=218 Identities=13% Similarity=0.150 Sum_probs=148.0
Q ss_pred CCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcccccccccCCcceEeccCChhHHHHHH
Q 021726 51 SNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIRK 130 (308)
Q Consensus 51 ~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr 130 (308)
.+|+..+.++ ++||||+++..++ +++|++|+.+++||.++. .|++++......... +.+.++..+|+.|+++||
T Consensus 53 ~~p~~~~~~l-r~~gpv~~~~~~~--~~vv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~--~~~~l~~~dg~~h~~~Rr 126 (441)
T 3nc3_A 53 NNPYAYFSQL-REEDPVHYEESID--SYFISRYHDVRYILQHPD-IFTTKSLVERAEPVM--RGPVLAQMHGKEHSAKRR 126 (441)
T ss_dssp HCGGGTHHHH-HHHCSEEEETTTT--EEEECCHHHHHHHHHCTT-TEECCCTTSCCCCSC--C-------------CCHH
T ss_pred cChHHHHHHH-HhcCCEEEeCCCC--EEEEcCHHHHHHHhcCcc-ccccccccccccccc--CCCccccCCcHHHHHHHH
Confidence 4677777766 6899999987665 899999999999998765 488876543333222 233345568999999999
Q ss_pred HHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHH-HHHHHHHHHHHHHHHhCCcccccccccchHHHHHHH
Q 021726 131 ICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLS-ELMKSLTSSITCRIGFGKSYEVEDQGISERSRFGAL 209 (308)
Q Consensus 131 ~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~-~~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~ 209 (308)
++ ++.|+.++++++.+.+.++++++++.|.. +.++|+. +....+++++++. +||.+.+ ..+.+...
T Consensus 127 ~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~dl~~~~~~~~~~~vi~~-l~G~~~~-------~~~~~~~~ 193 (441)
T 3nc3_A 127 IV-VRSFIGDALDHLSPLIKQNAENLLAPYLE----RGKSDLVNDFGKTFAVCVTMD-MLGLDKR-------DHEKISEW 193 (441)
T ss_dssp HH-HHHHHHTHHHHHHHHHHHHHHHHHTTTTT----TTEEECCCCCHHHHHHHHHHH-HTTCCGG-------GHHHHHHH
T ss_pred HH-HhhcCHHHHHHHHHHHHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHHHH-HcCCCHH-------HHHHHHHH
Confidence 97 89999999999999999999999998862 4568864 4556699999999 5898765 23344444
Q ss_pred HHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHhhhhcCCCCC
Q 021726 210 LTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQIWKQRGSKVD 289 (308)
Q Consensus 210 ~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~~ 289 (308)
.+.+....... .. .....+...+..+.+.+++.++|+++++. ..+|+++.|+++..++ ..
T Consensus 194 ~~~~~~~~~~~---------~~---~~~~~~~~~~~~~~l~~~~~~~i~~rr~~-----~~~Dll~~Ll~~~~~~---~~ 253 (441)
T 3nc3_A 194 HSGVADFITSI---------SQ---SPEARAHSLWCSEQLSQYLMPVIKERRVN-----PGSDLISILCTSEYEG---MA 253 (441)
T ss_dssp HHHHHHHHHCS---------CC---CHHHHHHHHHHHHHHHHHHHHHHHHHTTS-----CCSSHHHHHCC---------C
T ss_pred HHHHHHhcccc---------cC---ChHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCHHHHHHHhhccC---CC
Confidence 44444332110 00 11123455667788888999999998752 2579999999876533 36
Q ss_pred CCHHHHHHHHHHHhhccC
Q 021726 290 ITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 290 ~t~~~i~~~~~~l~~a~~ 307 (308)
+|++++.+++.++++||+
T Consensus 254 ls~~el~~~~~~ll~AG~ 271 (441)
T 3nc3_A 254 LSDKDILALILNVLLAAT 271 (441)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhh
Confidence 999999999999999985
No 63
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=99.84 E-value=4.8e-20 Score=167.02 Aligned_cols=213 Identities=12% Similarity=0.068 Sum_probs=156.0
Q ss_pred CCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcccccccccCCcceEeccCChhHHHHH
Q 021726 50 YSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIR 129 (308)
Q Consensus 50 ~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~R 129 (308)
..+|+..+.+|.++ |||+++..|+ +.++|+||+++++|+.+ .+.|++|+...........+. .++..+|+.|+++|
T Consensus 23 ~~~p~~~~~~l~~~-Gpv~~~~~~~-~~~vv~~~~~v~~vl~~-~~~f~~~~~~~~~~~~~~~~~-~~~~~~g~~h~~~R 98 (396)
T 3oft_A 23 EQDYFAAWKTLLDG-PGLVWSTANG-GHWIAARGDVVRELWGD-AERLSSQCLAVTPGLGKVMQF-IPLQQDGAEHKAFR 98 (396)
T ss_dssp TTCHHHHHHGGGGS-CSEEEECSTT-SEEEECSHHHHHHHHHC-TTTEESTTCCSSTTHHHHHCC-TTTTCCHHHHHHHH
T ss_pred hcChHHHHHHHHhc-CCeeeecCCC-CEEEEcCHHHHHHHHcC-cccccCCcccCCCcccccccc-CccccCCcHHHHHH
Confidence 46899999999988 9999999884 69999999999999955 468888874322111111122 34456899999999
Q ss_pred HHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HHHHHHHHHHHHhCCcccccccccchHHHHHH
Q 021726 130 KICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KSLTSSITCRIGFGKSYEVEDQGISERSRFGA 208 (308)
Q Consensus 130 r~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~ 208 (308)
|++ ++.|+.++++++.+.+.++++.+++.|.+ +.++|+...+ ..++.++++. +||.+.+ ..+.+..
T Consensus 99 ~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~v~~~-~~G~~~~-------~~~~~~~ 165 (396)
T 3oft_A 99 TPV-MKGLASRFVVALEPKVQAVARKLMESLRP----RGSCDFVSDFAEILPLNIFLT-LIDVPLE-------DRPRLRQ 165 (396)
T ss_dssp HHH-HHHTCHHHHHHHHHHHHHHHHHHHHHHGG----GSEEEHHHHTTTTHHHHHHHH-HTTCCGG-------GHHHHHH
T ss_pred HHh-hhhhCHHHHHHHHHHHHHHHHHHHHHhhh----cCCccHHHHHHHHHHHHHHHH-HcCCCHH-------HHHHHHH
Confidence 997 89999999999999999999999999973 3468886665 5577777776 6887654 2334443
Q ss_pred HHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHhhhhcCCCC
Q 021726 209 LLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQIWKQRGSKV 288 (308)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~ 288 (308)
....+... .. . ++..+..+.+.+++.++++++++. ..+|+++.|+++.+++ .
T Consensus 166 ~~~~~~~~------------~~----~----~~~~~~~~~~~~~~~~~i~~r~~~-----~~~d~l~~ll~~~~~~---~ 217 (396)
T 3oft_A 166 LGVQLTRP------------DG----S----MTVEQLKQAADDYLWPFIEKRMAQ-----PGDDLFSRILSEPVGG---R 217 (396)
T ss_dssp HHHHHHSC------------CS----S----CCHHHHHHHHHHHHHHHHHHHHHS-----CCSSHHHHHHTSCBTT---B
T ss_pred HHHHHhCC------------CC----H----HHHHHHHHHHHHHHHHHHHHHHhC-----CCCCHHHHHHHhhccC---C
Confidence 33333210 00 0 123345667778888888888753 3579999999875533 3
Q ss_pred CCCHHHHHHHHHHHhhccC
Q 021726 289 DITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 289 ~~t~~~i~~~~~~l~~a~~ 307 (308)
.+|++++..++.++++||+
T Consensus 218 ~l~~~el~~~~~~l~~AG~ 236 (396)
T 3oft_A 218 PWTVDEARRMCRNLLFGGL 236 (396)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhh
Confidence 6999999999999999985
No 64
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=99.83 E-value=8.3e-20 Score=165.58 Aligned_cols=215 Identities=13% Similarity=0.153 Sum_probs=156.3
Q ss_pred CCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcccc------cccccC-CcceEeccCCh
Q 021726 51 SNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQ------QKVSYN-GLDVAFAPYNA 123 (308)
Q Consensus 51 ~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~------~~~~~~-~~~~~~~~~g~ 123 (308)
.+|+..+.++ ++||||++ + | .++++|+||+++++||.+ ..|++++..... ...... +.+++ ..+|+
T Consensus 13 ~~p~~~~~~l-~~yGpv~~-~-g-~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~g~ 85 (397)
T 3buj_A 13 RDPYPSYHWL-LRHDPVHR-G-A-HRVWYVSRFADVRAVLGD--ERFARTGIRRFWTDLVGPGLLAEIVGDIIL-FQDEP 85 (397)
T ss_dssp HCCHHHHHHH-HHHCSEEE-C-G-GGCEEECSHHHHHHHHTC--TTEESHHHHHHHHHHHCSSHHHHHHTTCGG-GCCTT
T ss_pred cCchHHHHHH-HhcCCeee-C-C-CCeEEEcCHHHHHHHHcC--CCcccCcccccccccccccccccccccccc-cCCch
Confidence 4678888766 68999998 6 4 789999999999999975 367765432100 011110 33444 45799
Q ss_pred hHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHH-HHHHHHHHHHHHHhCCcccccccccch
Q 021726 124 YWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSEL-MKSLTSSITCRIGFGKSYEVEDQGISE 202 (308)
Q Consensus 124 ~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~-~~~~t~~vi~~~~fG~~~~~~~~~~~~ 202 (308)
.|+++||++ ++.|+.++++++.+.+.++++++++.|.. ++++|+... ...+++++++.+ ||.+.+ .
T Consensus 86 ~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~dl~~~~~~~~~~~vi~~~-~G~~~~-------~ 152 (397)
T 3buj_A 86 DHGRLRGVV-GPAFSPSALRRLEPVIAGTVDDLLRPALA----RGAMDVVDELAYPLALRAVLGL-LGLPAA-------D 152 (397)
T ss_dssp HHHHHHHHH-GGGSSTTTTGGGHHHHHHHHHHHHHHHHT----TTEEEHHHHTHHHHHHHHHHHH-HTCCGG-------G
T ss_pred hHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHhh----cCCeehHHHHHHHhHHHHHHHH-hCCCHH-------H
Confidence 999999997 89999999999999999999999999973 457998755 478999999999 998775 2
Q ss_pred HHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHhhh
Q 021726 203 RSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQIWK 282 (308)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~~~ 282 (308)
.+.+......+..... +. + .....++..++.+.+.+++.++|+++++. ..+|+++.|+++.+
T Consensus 153 ~~~~~~~~~~~~~~~~---------~~--~--~~~~~~~~~~~~~~~~~~~~~~i~~r~~~-----~~~dll~~ll~~~~ 214 (397)
T 3buj_A 153 WGAVGRWSRDVGRTLD---------RG--A--SAEDMRRGHAAIAEFADYVERALARRRRE-----GGEDLLALMLDAHD 214 (397)
T ss_dssp HHHHHHHHHHHHGGGC---------SS--C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcC---------CC--C--ChHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCCHHHHHHHhhh
Confidence 2334444444333211 10 1 11123456667788888899999988753 24799999998753
Q ss_pred hcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 283 QRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 283 ~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
+ + . +|++++.+++.++++||+
T Consensus 215 ~-~--~-ls~~ei~~~~~~~~~AG~ 235 (397)
T 3buj_A 215 R-G--L-MSRNEIVSTVVTFIFTGH 235 (397)
T ss_dssp T-T--S-SCHHHHHHHHHHHHHHHH
T ss_pred c-C--C-CCHHHHHHHHHHHHHcCc
Confidence 3 2 2 999999999999999985
No 65
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=99.83 E-value=1.3e-19 Score=164.47 Aligned_cols=206 Identities=14% Similarity=0.179 Sum_probs=147.4
Q ss_pred HHHHHhhCCeEEEEeC-Cc---CEEEecCHHHHHHHHHhcCccCCCCCCc------cccccc--ccCCcceEeccCChhH
Q 021726 58 WRLSKQYGPMVSLRLG-SV---PILVVSSAKMAEEVLKTHDLQFCSRPAL------LSQQKV--SYNGLDVAFAPYNAYW 125 (308)
Q Consensus 58 ~~~~~~YG~v~~~~~g-~~---~~vvi~~pe~ikevl~~~~~~f~~Rp~~------~~~~~~--~~~~~~~~~~~~g~~W 125 (308)
.+|.++ |||++++++ +. ++|+|+||+++++||+++ ..|++||.+ ...... ...+.++++ .+|+.|
T Consensus 20 ~~l~~~-Gpv~~~~~~~g~~~~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~~~ 96 (398)
T 1lfk_A 20 DELLAA-GALTRVTIGSGADAETHWMATAHAVVRQVMGDH-QQFSTRRRWDPRDEIGGKGIFRPRELVGNLMD-YDPPEH 96 (398)
T ss_dssp HHHHTS-CSEEEEC------CCCEEEECSHHHHHHHHHCT-TTEEECTTCCC-------------CCTTCGGG-CCTTHH
T ss_pred HHHHhc-CCccccccCCCCcccceEEEecHHHHHHHHhhC-cccccccccccccccCCcccccccccccCccc-cCCHHH
Confidence 346655 999999875 45 899999999999999544 358877751 111111 111334444 579999
Q ss_pred HHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHH-HHHHHHHHHHhCCcccccccccchHH
Q 021726 126 REIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKS-LTSSITCRIGFGKSYEVEDQGISERS 204 (308)
Q Consensus 126 k~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~-~t~~vi~~~~fG~~~~~~~~~~~~~~ 204 (308)
+++||++ ++.|+.++++++.+.+.++++++++.|.+ .|+++|+.+.+.. +++++++. +||.+.+ ..+
T Consensus 97 ~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~-------~~~ 164 (398)
T 1lfk_A 97 TRLRRKL-TPGFTLRKMQRMAPYIEQIVNDRLDEMER---AGSPADLIAFVADKVPGAVLCE-LVGVPRD-------DRD 164 (398)
T ss_dssp HHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHH---HCSSEEHHHHTTTTHHHHHHHH-HHTCCGG-------GHH
T ss_pred HHHHHHH-HhhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHHHHHHHHHHHH-HcCCCHH-------HHH
Confidence 9999996 89999999999999999999999999973 2668999999987 89999998 5998775 222
Q ss_pred HHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHhhhhc
Q 021726 205 RFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQIWKQR 284 (308)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~~~~~ 284 (308)
.+......++. .. +..++..++.+.+.+++.++|+++++. ..+|+++.|+++. ++
T Consensus 165 ~~~~~~~~~~~------------~~-------~~~~~~~~~~~~~~~~~~~~i~~r~~~-----~~~dll~~ll~~~-~~ 219 (398)
T 1lfk_A 165 MFMKLCHGHLD------------AS-------LSQKRRAALGDKFSRYLLAMIARERKE-----PGEGMIGAVVAEY-GD 219 (398)
T ss_dssp HHHHHHHHTTC------------TT-------SCHHHHHHHHHHHHHHHHHHHHHHHHS-----CCSSHHHHHHHHH-GG
T ss_pred HHHHHHHHHHh------------cc-------cchHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCHHHHHHHhc-CC
Confidence 33333222111 00 011345567777888888999988753 2469999999765 22
Q ss_pred CCCCCCCHHHHHHHHHHHhhccC
Q 021726 285 GSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 285 ~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
.+|++++.+++.++++||+
T Consensus 220 ----~l~~~el~~~~~~l~~AG~ 238 (398)
T 1lfk_A 220 ----DATDEELRGFCVQVMLAGD 238 (398)
T ss_dssp ----GSCHHHHHHHHHHHHHHTS
T ss_pred ----CCCHHHHHHHHHHHHHHhc
Confidence 5999999999999999996
No 66
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=99.82 E-value=1.2e-18 Score=159.49 Aligned_cols=220 Identities=16% Similarity=0.172 Sum_probs=155.0
Q ss_pred CCchHHHHHHHHhhCCeEEEEe-CCcCEEEecCHHHHHHHHHhcCccCCCCCC---ccccc-----ccccCCcceEeccC
Q 021726 51 SNPQNYFWRLSKQYGPMVSLRL-GSVPILVVSSAKMAEEVLKTHDLQFCSRPA---LLSQQ-----KVSYNGLDVAFAPY 121 (308)
Q Consensus 51 ~~~~~~~~~~~~~YG~v~~~~~-g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~---~~~~~-----~~~~~~~~~~~~~~ 121 (308)
.+|+..+.++.++ |||+++.. ++.++++|++++.+++|+.+. ..|++++. ..... .....+.+.++..+
T Consensus 38 ~~p~~~~~~lr~~-gpv~~~~~~~~~~~~vvt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 115 (426)
T 3rwl_A 38 DSVGEYFKRLRKD-DPVHYCADSAFGPYWSITKYNDIMHVDTNH-DIFSSDAGYGGIIIDDGIQKGGDGGLDLPNFIAMD 115 (426)
T ss_dssp TCHHHHHHHHHHH-CSEEEESCCTTCSEEEECSHHHHHHHHHCT-TTEECCGGGTCSSSSCCC-------CCCCCGGGCC
T ss_pred CCccHHHHHHHhc-CCeeeccCCCCCCEEEEcCHHHHHHHHcCC-cccccccccCCCCcccccccccccccccCcccccC
Confidence 4688889888765 99999987 557899999999999999765 46776652 11111 00011122344568
Q ss_pred ChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HHHHHHHHHHHHhCCccccccccc
Q 021726 122 NAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KSLTSSITCRIGFGKSYEVEDQGI 200 (308)
Q Consensus 122 g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~ 200 (308)
|+.|+++||++ ++.|+.++++++.+.+.++++.+++.|. .++++|+...+ ..+++++++. +||.+.+
T Consensus 116 g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~----~~~~~dl~~~~~~~~~~~vi~~-l~G~~~~------ 183 (426)
T 3rwl_A 116 RPRHDEQRKAV-SPIVAPANLAALEGTIRERVSKTLDGLP----VGEEFDWVDRVSIEITTQMLAT-LFDFPFE------ 183 (426)
T ss_dssp TTHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHTSC----SSSCEEHHHHTHHHHHHHHHHH-HHTCCGG------
T ss_pred chHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHhh----cCCCcchHHHHHHHHHHHHHHH-HcCCCHH------
Confidence 99999999996 8999999999999999999999999884 36689977776 6788888886 8997654
Q ss_pred chHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHh
Q 021726 201 SERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQI 280 (308)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~ 280 (308)
..+.+....+.+.. ++.... .. ..+...+..+.+.+++.++++++++. +..+|+++.|+++
T Consensus 184 -~~~~~~~~~~~~~~----------~~~~~~---~~-~~~~~~~~~~~~~~~~~~~i~~r~~~----~~~~dll~~ll~~ 244 (426)
T 3rwl_A 184 -ERRKLTRWSDVTTA----------APGGGV---VE-SWDQRKTELLECAAYFQVLWNERVNK----DPGNDLISMLAHS 244 (426)
T ss_dssp -GTHHHHHHHHHHTC----------CTTSSS---CS-SHHHHHHHHHHHHHHHHHHHHHHHTS----CCCSSHHHHHHHC
T ss_pred -HHHHHHHHHHHHHh----------ccCccc---cc-cHHHHHHHHHHHHHHHHHHHHHHhhc----CCCCCHHHHHHhc
Confidence 22233332222111 111110 11 12344556678888888999888432 2358999999987
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 281 WKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 281 ~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
.+++ .+|++++..++.++++||+
T Consensus 245 ~~~~----~ls~~el~~~~~~l~~AG~ 267 (426)
T 3rwl_A 245 PATR----NMTPEEYLGNVLLLIVGGN 267 (426)
T ss_dssp GGGG----GCCHHHHHHHHHHHHHHHH
T ss_pred ccCC----CCCHHHHHHHHHHHHHHHH
Confidence 6544 3899999999999999985
No 67
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=99.82 E-value=1.9e-19 Score=164.22 Aligned_cols=214 Identities=15% Similarity=0.117 Sum_probs=155.1
Q ss_pred CCchHHHHHHHHhhCCeEEEE-eCC-cCEEEecCHHHHHHHHHhcCccCCCCCCccccccccc--CC-cceEeccCChhH
Q 021726 51 SNPQNYFWRLSKQYGPMVSLR-LGS-VPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQKVSY--NG-LDVAFAPYNAYW 125 (308)
Q Consensus 51 ~~~~~~~~~~~~~YG~v~~~~-~g~-~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~~~~~--~~-~~~~~~~~g~~W 125 (308)
.+|+..+.++.+ ||||+++. .|. .+++||++++.+++||. +.+.|++++.......... .. .+.++..+|+.|
T Consensus 37 ~dp~~~~~~lr~-~gpV~~~~~~g~~~~~~vv~~~~~v~~vl~-~~~~fs~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h 114 (415)
T 3mgx_A 37 LERHARWRELAA-EDAMVWSDPGSSPSGFWSVFSHRACAAVLA-PSAPLTSEYGMMIGFDRDHPDNSGGRMMVVSEHEQH 114 (415)
T ss_dssp TTHHHHHHHHHH-HTCCEEECSSSSSSCEEEECSHHHHHHHSC-TTSSEECTTCSSTTCCSSSCCTTTTTSGGGCCHHHH
T ss_pred CChhHHHHHHHh-cCCEeeccCCCCcCCEEEEecHHHHHHHHh-ChhhhcCCccccccccccccccccCCCccccCcHHH
Confidence 478999988876 99999997 554 79999999999999994 4457888875332211100 01 223455689999
Q ss_pred HHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HHHHHHHHHHHHhCCcccccccccchHH
Q 021726 126 REIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KSLTSSITCRIGFGKSYEVEDQGISERS 204 (308)
Q Consensus 126 k~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~ 204 (308)
+++||++ ++.|+.++++++.+.+.++++.+++.|.+ +.++|+.+.+ ..+++++|+. +||.+.+ ..+
T Consensus 115 ~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~dl~~~~~~~~~~~vi~~-l~G~~~~-------~~~ 181 (415)
T 3mgx_A 115 RKLRKLV-GPLLSRAAARKLAERVRIEVGDVLGRVLD----GEVCDAATAIGPRIPAAVVCE-ILGVPAE-------DED 181 (415)
T ss_dssp HHHHHHH-GGGSSHHHHHHSHHHHHHHHHHHTTTSSS----SSCEESTTTTTTHHHHHHHHH-HHTCCGG-------GHH
T ss_pred HHHHHHh-HhhhCHHHHHHHHHHHHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHHH-HcCCCHH-------HHH
Confidence 9999996 89999999999999999999999998863 3479998877 6799999998 5897544 233
Q ss_pred HHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHhhhhc
Q 021726 205 RFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQIWKQR 284 (308)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~~~~~ 284 (308)
.+.+..+.+..... ..+.| .. ..++.+.+.+++.++|+++++. ..+|+++.|+++.
T Consensus 182 ~~~~~~~~~~~~~~----~~~~~-------~~-----~~~~~~~l~~~~~~~i~~rr~~-----~~~dll~~ll~~~--- 237 (415)
T 3mgx_A 182 MLIDLTNHAFGGED----ELFDG-------MT-----PRQAHTEILVYFDELITARRKE-----PGDDLVSTLVTDD--- 237 (415)
T ss_dssp HHHHHHHHHTSCCC--------C-------CC-----HHHHHHHHHHHHHHHHHHHHHS-----CCSSHHHHHHHCT---
T ss_pred HHHHHHHHHHcccC----cccch-------HH-----HHHHHHHHHHHHHHHHHHHHhC-----CCCCHHHHHHhCC---
Confidence 44444444332111 11111 01 1145667778888888888753 2579999999754
Q ss_pred CCCCCCCHHHHHHHHHHHhhccC
Q 021726 285 GSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 285 ~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
.+|++++..++.++++||+
T Consensus 238 ----~ls~~el~~~~~~ll~AG~ 256 (415)
T 3mgx_A 238 ----DLTIDDVLLNCDNVLIGGN 256 (415)
T ss_dssp ----TSCHHHHHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHHhhh
Confidence 3999999999999999985
No 68
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=99.81 E-value=2.6e-19 Score=162.34 Aligned_cols=210 Identities=11% Similarity=0.124 Sum_probs=150.6
Q ss_pred CCCchHHHHHHHHhhCCeEEEEe-CCcCEEEecCHHHHHHHHHhcCccCC-C-CCCc--cccc--cccc-CCcceEeccC
Q 021726 50 YSNPQNYFWRLSKQYGPMVSLRL-GSVPILVVSSAKMAEEVLKTHDLQFC-S-RPAL--LSQQ--KVSY-NGLDVAFAPY 121 (308)
Q Consensus 50 ~~~~~~~~~~~~~~YG~v~~~~~-g~~~~vvi~~pe~ikevl~~~~~~f~-~-Rp~~--~~~~--~~~~-~~~~~~~~~~ 121 (308)
..+++..+.+| ++||||+++++ |+.++|+|+||++++++|.++ .|+ + ++.. .... .+.. .+.++++.
T Consensus 15 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 89 (396)
T 1n40_A 15 GDRIPDAVAEL-RTREPIRKVRTITGAEAWLVSSYALCTQVLEDR--RFSMKETAAAGAPRLNALTVPPEVVNNMGNI-- 89 (396)
T ss_dssp SSSCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEESGGGGSTTCCCSSCCSSCGGGGGHHHHH--
T ss_pred ccCccHHHHHH-HHhCCeeEeecCCCceEEEEecHHHHHHHHhCC--CcccccCccccccccccccCCchhhhhhhhH--
Confidence 46799999999 99999999998 889999999999999999865 476 5 5432 1111 1111 13344432
Q ss_pred ChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HHHHHHHHHHHHhCCccccccccc
Q 021726 122 NAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KSLTSSITCRIGFGKSYEVEDQGI 200 (308)
Q Consensus 122 g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~ 200 (308)
.|+++||++ ++.|+.+ ++++.+.+.++++++++.|.+ .++++|+.+.+ ..+++++|+. +||.+.+
T Consensus 90 --~h~~~R~~~-~~~fs~~-~~~~~~~i~~~~~~l~~~l~~---~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~------ 155 (396)
T 1n40_A 90 --ADAGLRKAV-MKAITPK-APGLEQFLRDTANSLLDNLIT---EGAPADLRNDFADPLATALHCK-VLGIPQE------ 155 (396)
T ss_dssp --HHTTCHHHH-HHHTSSC-STTHHHHHHHHHHHHHHHHHH---HCSCEETTTTTHHHHHHHHHHH-HHTCCGG------
T ss_pred --HHHHHHHHH-HHhhChH-HHHhHHHHHHHHHHHHHHHHh---cCCCccHHHHHHHHhHHHHHHH-HhCCChh------
Confidence 999999997 8899999 999999999999999999974 15679998665 4799999999 8998765
Q ss_pred chHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHh
Q 021726 201 SERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQI 280 (308)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~ 280 (308)
..+.+.+..+.++.... ..| . ++..+..+.+ +++.++++ + . .+++|+++.|+++
T Consensus 156 -~~~~~~~~~~~~~~~~~------~~p----------~-~~~~~~~~~~-~~~~~~i~---~---~-~~~~dll~~ll~~ 209 (396)
T 1n40_A 156 -DGPKLFRSLSIAFMSSA------DPI----------P-AAKINWDRDI-EYMAGILE---N---P-NITTGLMGELSRL 209 (396)
T ss_dssp -GHHHHHHTHHHHTBCCS------SCC----------H-HHHHHHHHHH-HHHHHHHH---C---T-TCCSHHHHHHHHH
T ss_pred -hHHHHHHHHHHHhcccc------CCC----------H-HHHHHHHHHH-HHHHHHHh---C---C-CCCCCHHHHHHHh
Confidence 22344444333332110 011 1 2344455556 67777776 1 1 2357999999987
Q ss_pred h-h-hcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 281 W-K-QRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 281 ~-~-~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
. + ++ ..+|++++.+++.++++||+
T Consensus 210 ~~~~~~---~~l~~~~i~~~~~~~~~AG~ 235 (396)
T 1n40_A 210 RKDPAY---SHVSDELFATIGVTFFGAGV 235 (396)
T ss_dssp HTSGGG---TTSCHHHHHHHHHHHHHHHH
T ss_pred hccccc---CCCCHHHHHHHHHHHHHHhh
Confidence 5 3 22 36999999999999999985
No 69
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=99.80 E-value=7.4e-19 Score=162.54 Aligned_cols=163 Identities=12% Similarity=0.164 Sum_probs=117.6
Q ss_pred CCCCCCCCCCCcccccccCCC----CC-CchHHHHHHHHhhCC-eEEEEeCCcCEEE-------ecCHHHHHHHHH----
Q 021726 29 SIALPPGPRGLPFIGNLHQFD----YS-NPQNYFWRLSKQYGP-MVSLRLGSVPILV-------VSSAKMAEEVLK---- 91 (308)
Q Consensus 29 ~~~lpPGP~~~P~lGn~~~~~----~~-~~~~~~~~~~~~YG~-v~~~~~g~~~~vv-------i~~pe~ikevl~---- 91 (308)
+.+.+|||+|||++||++++. .. +++..+.++.++||+ ||++++++.++|+ +++.+..+.++.
T Consensus 7 Pl~~iPGp~g~P~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~ 86 (473)
T 3dan_A 7 PLREIPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGPFVSSNPKVIVLLDAKSFPILFDVSKV 86 (473)
T ss_dssp CBCCCCCCCCSTTHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTTCTTTCSCCEEEEECSTTTGGGGGCTTTE
T ss_pred CCCCCCCCCCCcchhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCCCCccccCCceEEeecccccceecCCcce
Confidence 445689999999999998642 34 789999999999999 9999998654433 344443333332
Q ss_pred hcCccCCC-CCCcccccccccCCcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcc
Q 021726 92 THDLQFCS-RPALLSQQKVSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPV 170 (308)
Q Consensus 92 ~~~~~f~~-Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~v 170 (308)
++...+.. .|.. .....+.....++..+|+.|+++||++ .+.|+.+ ++++.+.++++++.+++.|.+...+++++
T Consensus 87 ~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~h~~~R~~~-~~~f~~~-~~~~~~~i~~~~~~ll~~~~~~~~~~~~v 162 (473)
T 3dan_A 87 EKKDLFTGTYMPS--TKLTGGYRVLSYLDPSEPRHAQLKNLL-FFMLKNS-SNRVIPQFETTYTELFEGLEAELAKNGKA 162 (473)
T ss_dssp ECSSCTTSSSCCC--GGGGTTSCCGGGCCTTSHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHSCE
T ss_pred eccccccccccCC--ccccCCCcceeeeCCCcHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 12222222 2211 122221112234456899999999997 8889884 89999999999999999997533335689
Q ss_pred cHHHHHHHHHHHHHHHHHhCCcccc
Q 021726 171 NLSELMKSLTSSITCRIGFGKSYEV 195 (308)
Q Consensus 171 d~~~~~~~~t~~vi~~~~fG~~~~~ 195 (308)
|+.+.+.+++++++++++||.+.+.
T Consensus 163 dl~~~~~~~~~~~i~~~~~G~~~~~ 187 (473)
T 3dan_A 163 AFNDVGEQAAFRFLGRAYFNSNPEE 187 (473)
T ss_dssp ECHHHHHHHHHHHHHHHHHSCCGGG
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999999998873
No 70
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=99.78 E-value=2.8e-18 Score=153.96 Aligned_cols=201 Identities=10% Similarity=0.092 Sum_probs=145.5
Q ss_pred chHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCC-cc-cc-----c-ccccC--CcceEeccCC
Q 021726 53 PQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPA-LL-SQ-----Q-KVSYN--GLDVAFAPYN 122 (308)
Q Consensus 53 ~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~-~~-~~-----~-~~~~~--~~~~~~~~~g 122 (308)
|+..+.++ ++||||+++. | ++++++|+.+++||.++ +.|++++. .. .. . .+.+. +.++++ .+|
T Consensus 1 p~~~~~~l-r~~gpv~~~~-g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~dg 73 (367)
T 3b4x_A 1 MYDWFKQM-RKESPVYYDG-K---VWNLFKYEDCKMVLNDH-KRFSSNLTGYNDKLEMLRSGKVFFDIPTRYTMLT-SDP 73 (367)
T ss_dssp CHHHHHHH-HHHCSEEECS-S---SEEECSHHHHHHHHHCT-TTEECCCSSTTTTHHHHHHTCCCCCCGGGSSGGG-CCT
T ss_pred CCHHHHHH-HHcCCceeeC-C---EEEEecHHHHHHHHcCc-hhhccCcccccccccccccccchhhccccccccc-CCc
Confidence 45667777 5799999988 5 89999999999999876 47887753 21 11 1 22110 134444 479
Q ss_pred hhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HHHHHHHHHHHHhCCcccccccccc
Q 021726 123 AYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KSLTSSITCRIGFGKSYEVEDQGIS 201 (308)
Q Consensus 123 ~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~ 201 (308)
+.|+++||++ ++.|+.+++++ +.+.++++.+++.|. | ++|+.+.+ ..+++++|+. +||.+ + +
T Consensus 74 ~~h~~~R~~~-~~~fs~~~l~~--~~i~~~~~~l~~~l~-----g-~~d~~~~~~~~~~~~vi~~-~~G~~-~--~---- 136 (367)
T 3b4x_A 74 PLHDELRNLT-ADAFNPSNLPV--DFVREVTVKLLSELD-----E-EFDVIESFAIPLPILVISK-MLGIN-P--D---- 136 (367)
T ss_dssp THHHHHHHTT-GGGGSGGGSCH--HHHHHHHHHHHHTCC-----S-EEEHHHHTTTHHHHHHHHH-HHTCC-C--C----
T ss_pred hhHHHHHHHH-HHhcCHhhhcc--hHHHHHHHHHHHhcc-----C-CcchHHHHHHhhHHHHHHH-HcCCC-C--c----
Confidence 9999999997 89999998887 999999999999885 4 49998765 7999999999 79998 5 2
Q ss_pred hHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHhh
Q 021726 202 ERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQIW 281 (308)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~~ 281 (308)
.+.+....+.++.... ..|... +.. ++.+.+.+++.++++++++. ..+|+++.|+++
T Consensus 137 -~~~~~~~~~~~~~~~~------~~p~~~---------~~~-~~~~~~~~~~~~~i~~r~~~-----~~~dll~~ll~~- 193 (367)
T 3b4x_A 137 -VKKVKDWSDLVALRLG------RADEIF---------SIG-RKYLELISFSKKELDSRKGK-----EIVDLTGKIANS- 193 (367)
T ss_dssp -HHHHHHHHHHHHTTTT------STTGGG---------CCC-HHHHHHHHHHHHHHHHHTTT-----CCSSHHHHHHTS-
T ss_pred -HHHHHHHHHHHHhccC------CChhhH---------HHH-HHHHHHHHHHHHHHHHHhcC-----CCCCHHHHHHhc-
Confidence 2344444444443211 023211 111 35566777888888888752 247999999975
Q ss_pred hhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 282 KQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 282 ~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
.+|++++.+++.++++||+
T Consensus 194 -------~ls~~el~~~~~~l~~AG~ 212 (367)
T 3b4x_A 194 -------NLSELEKEGYFILLMIAGN 212 (367)
T ss_dssp -------SSCHHHHHHHHHHHHHTTT
T ss_pred -------cCCHHHHHHHHHHHHHhhh
Confidence 3899999999999999996
No 71
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=99.77 E-value=5.1e-19 Score=161.43 Aligned_cols=219 Identities=14% Similarity=0.164 Sum_probs=152.6
Q ss_pred CCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCccccc----ccccCCcceEeccCChhH
Q 021726 50 YSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQ----KVSYNGLDVAFAPYNAYW 125 (308)
Q Consensus 50 ~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~----~~~~~~~~~~~~~~g~~W 125 (308)
..+|+.. ++.++||||+++.+|+.. ++|++++.+++||.++.-.+..++...... .......+.++..+|+.|
T Consensus 32 ~~~P~~~--~~lr~~gpv~~~~~g~~~-~vv~~~~~v~~vL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h 108 (416)
T 3p3o_A 32 PNFSWDS--PEVAEAREKSWIARTPLA-LLVLRYAEADQLARDKRLISGFRGLVDMVGTPEGPVRDFMVDFLQSLDGADH 108 (416)
T ss_dssp TTCCTTS--HHHHHHHHHCSEEECSSS-EEECSHHHHHHHHHCTTEECSHHHHHHHHTCCSSHHHHHHHHSGGGCCHHHH
T ss_pred ccCCchH--HHHHHhCCccccccCCCc-eEEeCHHHHHHHHcCcccccCCccccccccccccchhhhhcCccccCCchHH
Confidence 3467766 666789999999998877 999999999999977642222111100000 000000123455689999
Q ss_pred HHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HHHHHHHHHHHHhCCcccccccccchHH
Q 021726 126 REIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KSLTSSITCRIGFGKSYEVEDQGISERS 204 (308)
Q Consensus 126 k~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~ 204 (308)
+++||++ ++.|+.++++++.+.+.++++.+++.| . +.++|+...+ ..+++++|+. +||.+.+ ..+
T Consensus 109 ~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l-~----~g~~d~~~~~~~~~~~~vi~~-l~G~~~~-------~~~ 174 (416)
T 3p3o_A 109 RRLRGLA-THPFTPRRITAVQPFVRSTVEQLIDKL-P----QGDFDFVQHFPHPLPALVMCQ-LLGFPLE-------DYD 174 (416)
T ss_dssp HHHHHTT-CGGGSHHHHHHHHHHHHHHHHHHHHTC-C----SSSEEHHHHTTTHHHHHHHHH-HHTCCGG-------GHH
T ss_pred HHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHhh-c----cCCccHHHHHHHHHHHHHHHH-HhCCCHH-------HHH
Confidence 9999997 899999999999999999999999988 3 2359965555 5699999999 5897654 223
Q ss_pred HHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHhhhhc
Q 021726 205 RFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQIWKQR 284 (308)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~~~~~ 284 (308)
.+......+... +.... .....++..++.+.+.+++.++|+++++. ..+|+++.|+++..++
T Consensus 175 ~~~~~~~~~~~~---------~~~~~----~~~~~~~~~~~~~~l~~~~~~~i~~rr~~-----~~~dll~~ll~~~~~~ 236 (416)
T 3p3o_A 175 TVGRLSIETNLG---------LALSN----DQDILVKVEQGLGRMFDYLVAAIEKRKVE-----PGDDLTSDIVRAFHDG 236 (416)
T ss_dssp HHHHHHHTTCGG---------GTTCS----CHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CCSSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh---------ccccc----chhhHHHHHHHHHHHHHHHHHHHHHHHhC-----CCccHHHHHHHhhccC
Confidence 333222221111 11110 12234566778888899999999998753 3579999999876543
Q ss_pred CCCCCCCHHHHHHHHHHHhhccC
Q 021726 285 GSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 285 ~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
.+|++++..++.++++||+
T Consensus 237 ----~ls~~el~~~~~~l~~AG~ 255 (416)
T 3p3o_A 237 ----VLDDYELRTLVATVLVAGY 255 (416)
T ss_dssp ----SSCHHHHHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHHhhc
Confidence 5999999999999999985
No 72
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=99.77 E-value=1.1e-17 Score=151.44 Aligned_cols=216 Identities=17% Similarity=0.172 Sum_probs=153.8
Q ss_pred CCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcccccccccCCcceEeccCChhHHHHHH
Q 021726 51 SNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIRK 130 (308)
Q Consensus 51 ~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr 130 (308)
.+|+..+.++. ++|||+++..| .++|++++.+++++.+. .|+.++...........+.+ ++..+|+.|+++||
T Consensus 20 ~dp~~~~~~lr-~~~pv~~~~~g---~~~v~~~~~v~~~l~d~--~fs~~~~~~~~~~~~~~~~~-l~~~dg~~h~~~R~ 92 (394)
T 2wiy_A 20 NNPYPWYRRLQ-QDHPVHKLEDG---TYLVSRYADVSHFAKLP--IMSVEPGWADAGPWAVASDT-ALGSDPPHHTVLRR 92 (394)
T ss_dssp HCCHHHHHHHH-HHCSEEECTTS---CEEECCHHHHHHHTTST--TEECHHHHHTCGGGGGGGGS-GGGCCTTHHHHHHH
T ss_pred cCccHHHHHHH-hcCCeEEecCC---eEEEcCHHHHHHHHcCC--Cccccccccccccchhcccc-cccCCchHHHHHHH
Confidence 46888888775 46999987755 78999999999999643 57655422111111111233 45568999999999
Q ss_pred HHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHHHHhCCcccccccccchHHHHHHHH
Q 021726 131 ICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELMKSLTSSITCRIGFGKSYEVEDQGISERSRFGALL 210 (308)
Q Consensus 131 ~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~ 210 (308)
++ ++.|+.++++.+.+.+.+.++.+++.|. .++++|+.+.+..+++++++..+||.+.+ ..+.+.+..
T Consensus 93 ~~-~~~fs~~~~~~~~~~i~~~~~~l~~~~~----~~~~~d~~~~~~~~~~~vi~~~~~G~~~~-------~~~~~~~~~ 160 (394)
T 2wiy_A 93 QT-NKWFTPKLVDGWVRTTRELVGDLLDGVE----AGQVIEARRDLAVVPTHVTMARVLQLPED-------DADAVMEAM 160 (394)
T ss_dssp HH-HTTCSHHHHHHHTHHHHHHHHHHHHTCC----TTCCEEHHHHHTHHHHHHHHHHHHTCCCC-------CHHHHHHHH
T ss_pred HH-HhccCHHHHHHHHHHHHHHHHHHHHHHh----ccCCeeHHHHHHhhhHHHHHHHHcCCCHh-------HHHHHHHHH
Confidence 96 8999999999999999999999999875 36689999999999999999999998654 123333332
Q ss_pred HHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHhhhhcCCCCCC
Q 021726 211 TETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQIWKQRGSKVDI 290 (308)
Q Consensus 211 ~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~~~ 290 (308)
...+.. ....|... ..++..++.+.+.+++.++|+++++. ..+|+++.|+++.+++ .+
T Consensus 161 ~~~~~~------~~~~p~~~-------~~~~~~~~~~~l~~~~~~~i~~rr~~-----~~~dll~~Ll~~~~~~----~l 218 (394)
T 2wiy_A 161 FEAMLM------QSAEPADG-------DVDRAAVAFGYLSARVAEMLEDKRVN-----PGDGLADSLLDAARAG----EI 218 (394)
T ss_dssp HHHHGG------GSSSCCTT-------HHHHHHHHHHHHHHHHHHHHHHHHHS-----CCSSHHHHHHHHHHTT----SS
T ss_pred HHHHHh------ccCCccch-------HHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCcHHHHHHHhhhcC----CC
Confidence 222110 01122211 12344456677778888888887642 2468999999876433 49
Q ss_pred CHHHHHHHHHHHhhccC
Q 021726 291 TWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 291 t~~~i~~~~~~l~~a~~ 307 (308)
|++++.+++.++++||+
T Consensus 219 s~~el~~~~~~l~~AG~ 235 (394)
T 2wiy_A 219 TESEAIATILVFYAVGH 235 (394)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhhh
Confidence 99999999999999996
No 73
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=99.76 E-value=3.5e-18 Score=151.92 Aligned_cols=188 Identities=15% Similarity=0.114 Sum_probs=132.3
Q ss_pred HhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcccccccccCCcceEeccCChhHHHHHHHHHHhhCChHH
Q 021726 62 KQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIRKICVVHLFNSNR 141 (308)
Q Consensus 62 ~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~ 141 (308)
++||||+++ | +++|+||+++++||.++ +.|++|+....... .+.+++ ..+|+.|+++||++ ++.|+.++
T Consensus 2 r~~gpv~~~--g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~---~~~~l~-~~~g~~~~~~R~~~-~~~fs~~~ 70 (343)
T 2rfb_A 2 RLNDPVHYD--G---AWHVYKYSDVKHVLMND-KIFSSNPGNRYSNA---GGISFI-TMDNPEHKEFRDIS-APYFLPSK 70 (343)
T ss_dssp -CCCCEEET--T---EEEECSHHHHHHHHHCT-TTEESSCSSCCC------CCGGG-GCCHHHHHHHHHHH-HHHHSHHH
T ss_pred CCcCCeeee--C---eEEEcCHHHHHHHHhCh-hhcccCCcCCCCCc---cccccc-cCCchHHHHHHHHh-hhhcCHHH
Confidence 589999986 4 99999999999999876 47888873211111 234544 45899999999997 89999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HHHHHHHHHHHHhCCcccccccccchHHHHHHHHHHHHhccccc
Q 021726 142 VQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KSLTSSITCRIGFGKSYEVEDQGISERSRFGALLTETQALVVGF 220 (308)
Q Consensus 142 l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (308)
++++.+.+.++++.+++.|. ++|+.+.+ ..+++++|+.+ ||.+.+ ..+.+.+..+.++...
T Consensus 71 l~~~~~~i~~~~~~l~~~l~-------~~d~~~~~~~~~~~~vi~~~-~G~~~~-------~~~~~~~~~~~~~~~~--- 132 (343)
T 2rfb_A 71 INDYKDFIEETSNDLIKNID-------NKDIISEYAVRLPVNIISKI-LGIPDS-------DMPLFKLWSDYIIGNK--- 132 (343)
T ss_dssp HGGGHHHHHHHHHHHHTTCT-------TSCHHHHTTTHHHHHHHHHH-HTCCGG-------GHHHHHHHHHHHHTSC---
T ss_pred HHHHHHHHHHHHHHHHHhcc-------ccCHHHHHhhhhhHHHHHHH-cCCCHH-------HHHHHHHHHHHHhhcc---
Confidence 99999999999999998774 68998865 89999999999 998765 2234444444333211
Q ss_pred cccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHhhhhcCCCCCCCHHHHHHHHH
Q 021726 221 FVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQIWKQRGSKVDITWDHIKAVLM 300 (308)
Q Consensus 221 ~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~~~t~~~i~~~~~ 300 (308)
.|.+. .. ++. +..+.+.+++.+++ .+| ++.|+++..++ ..+|++++.+++.
T Consensus 133 -----~p~~~------~~-~~~-~~~~~~~~~~~~~i------------~~d-l~~ll~~~~~~---~~l~~~ei~~~~~ 183 (343)
T 2rfb_A 133 -----RDENF------NY-VNN-RMVSRLLEIFKSDS------------HGI-INVLAGSSLKN---RKLTMDEKIKYIM 183 (343)
T ss_dssp -----CSSHH------HH-HHH-HHHHHHHHHHHSCC------------SSH-HHHHHTCBCSS---SBCCHHHHHHHHH
T ss_pred -----Ccchh------hH-HHH-HHHHHHHHHHHHHH------------hcc-HHHHHhhhcCC---CCCCHHHHHHHHH
Confidence 13221 11 222 34444443333222 358 99999764332 3699999999999
Q ss_pred HHhhccC
Q 021726 301 VKFHNQY 307 (308)
Q Consensus 301 ~l~~a~~ 307 (308)
++++||+
T Consensus 184 ~~~~AG~ 190 (343)
T 2rfb_A 184 LLIIGGN 190 (343)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999985
No 74
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=99.76 E-value=8.7e-18 Score=150.77 Aligned_cols=200 Identities=14% Similarity=0.251 Sum_probs=140.7
Q ss_pred chHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCC-----cccc--cc--ccc-CCcceEeccCC
Q 021726 53 PQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPA-----LLSQ--QK--VSY-NGLDVAFAPYN 122 (308)
Q Consensus 53 ~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~-----~~~~--~~--~~~-~~~~~~~~~~g 122 (308)
|+..+.++ ++||||+++ | +.+++++|+++++||.++ +.|++|+. .... .. +.. .|.+++ ..+|
T Consensus 1 p~~~~~~l-r~~Gpv~~~--g--~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~g 73 (368)
T 1io7_A 1 MYDWFSEM-RKKDPVYYD--G--NIWQVFSYRYTKEVLNNF-SKFSSDLTGYHERLEDLRNGKIRFDIPTRYTML-TSDP 73 (368)
T ss_dssp CHHHHHHH-HHHCSEEEC--S--SCEEECSHHHHHHHHHCT-TTEECCCSSHHHHHHHHTTTCCCCSCGGGSSGG-GCCT
T ss_pred CCHHHHHH-HhcCCeEeE--C--CEEEEecHHHHHHHHcCc-ccccccccccccccccccccccccccccccccc-cCCC
Confidence 45667777 689999987 5 689999999999999874 47988874 1101 11 110 113444 4579
Q ss_pred hhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HHHHHHHHHHHHhCCcccccccccc
Q 021726 123 AYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KSLTSSITCRIGFGKSYEVEDQGIS 201 (308)
Q Consensus 123 ~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~ 201 (308)
+.|+++||++ ++.|+.++++++.+.+.++++++++.| + .| ++|+.+.+ ..+++++|+.+ ||.+.+
T Consensus 74 ~~h~~~R~~~-~~~f~~~~~~~~~~~i~~~~~~l~~~l-~---~g-~~d~~~~~~~~~~~~vi~~~-~G~~~~------- 139 (368)
T 1io7_A 74 PLHDELRSMS-ADIFSPQKLQTLETFIRETTRSLLDSI-D---PR-EDDIVKKLAVPLPIIVISKI-LGLPIE------- 139 (368)
T ss_dssp THHHHHHGGG-TTTTCHHHHHHHHHHHHHHHHHHHHTC-C---TT-SEEHHHHTTTHHHHHHHHHH-HTCCGG-------
T ss_pred hHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHh-h---cC-CccHHHHHHHHHHHHHHHHH-hCCCHH-------
Confidence 9999999997 899999999999999999999999998 3 23 69999877 78999999999 998765
Q ss_pred hHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHhh
Q 021726 202 ERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQIW 281 (308)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~~ 281 (308)
..+.+......+ ... .. .|. .. ++..+..+.+.+++.+++ + ..+|+++.|+++
T Consensus 140 ~~~~~~~~~~~~---~~~--~~--~p~--------~~-~~~~~~~~~~~~~~~~~i----~------~~~d~l~~ll~~- 192 (368)
T 1io7_A 140 DKEKFKEWSDLV---AFR--LG--KPG--------EI-FELGKKYLELIGYVKDHL----N------SGTEVVSRVVNS- 192 (368)
T ss_dssp GHHHHHHHGGGC---TTS--CC--CTT--------CH-HHHHHHHHHHHHHHHHHT----T------SSCHHHHHHHTS-
T ss_pred HHHHHHHHHHHH---Hhc--cC--ChH--------HH-HHHHHHHHHHHHHHHHHh----C------CCCCHHHHHHhc-
Confidence 122332221111 110 00 121 11 334445556666666555 1 146999999965
Q ss_pred hhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 282 KQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 282 ~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
.+|++++.+++.++++||+
T Consensus 193 -------~l~~~ei~~~~~~l~~AG~ 211 (368)
T 1io7_A 193 -------NLSDIEKLGYIILLLIAGN 211 (368)
T ss_dssp -------SCCHHHHHHHHHHHHHTTH
T ss_pred -------cCCHHHHHHHHHHHHHhhh
Confidence 3899999999999999995
No 75
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=99.58 E-value=2.5e-14 Score=130.19 Aligned_cols=229 Identities=13% Similarity=0.151 Sum_probs=138.6
Q ss_pred CCCccccccc---CCCCCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcccccc---cc
Q 021726 37 RGLPFIGNLH---QFDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQK---VS 110 (308)
Q Consensus 37 ~~~P~lGn~~---~~~~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~~---~~ 110 (308)
.++|.+|-=+ .+ ..+|+..+.++ +++|||+ +.++.++.+|++++.+++||.+. ..|++++....... ..
T Consensus 18 ~~~P~~~~dp~~~~~-~~dP~~~~~~l-R~~gPV~--~~~~~~~~~vt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~ 92 (412)
T 4dnj_A 18 AGVPHLGIDPFALDY-FADPYPEQETL-REAGPVV--YLDKWNVYGVARYAEVYAVLNDP-LTFCSSRGVGLSDFKKEKP 92 (412)
T ss_dssp TTSCEECCCTTSHHH-HHSCHHHHHHH-HHHCSSE--EETTTTEEEECSHHHHHHHHTCT-TTEESTTCSSSSCTTTSCC
T ss_pred CCCCccCCCCCCHHH-HhCcHHHHHHH-HhcCCEE--EECCCCEEEECCHHHHHHHHcCC-ccccCCCcccccccccccc
Confidence 4688877211 11 35788888777 4679996 56777899999999999999644 45655432211111 11
Q ss_pred cCCcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccH-HHHHHHHHHHHHHHHHh
Q 021726 111 YNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNL-SELMKSLTSSITCRIGF 189 (308)
Q Consensus 111 ~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~-~~~~~~~t~~vi~~~~f 189 (308)
....+.++..+|+.|+++||++ ++.|+.++++++.+.+.+.++++++.+.. .+.++|+ .+....+++++++.+.
T Consensus 93 ~~~~~~~~~~Dg~~H~r~R~~~-~~~Fs~~~l~~~~~~i~~~~~~l~~~~~~---~~~~~D~v~~~~~~~~~~~i~~l~- 167 (412)
T 4dnj_A 93 WRPPSLILEADPPAHTRTRAVL-SKVLSPATMKRLRDGFAAAADAKIDELLA---RGGNIDAIADLAEAYPLSVFPDAM- 167 (412)
T ss_dssp SSCCCTTTTCCTTHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHHHHHHH---TTSEEETCCCCCCHHHHHHHHHHH-
T ss_pred ccCCCccccCChHHHHHHHhhc-ccccCHHHHHHhhHHHHHHHHHHHHhhhc---cCCCceeHHHHHhhhhHhHHHHHc-
Confidence 1122334556899999999996 89999999999999999999999999863 2455664 4556677888888765
Q ss_pred CCcccccccccchHHHHHHHHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCC
Q 021726 190 GKSYEVEDQGISERSRFGALLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTD 269 (308)
Q Consensus 190 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 269 (308)
|.... + .+.+......+..... .. ............. ....+.++.++.. .
T Consensus 168 g~~~~--~-----~~~~~~~~~~~~~~~~---------~~------~~~~~~~~~~~~~----~~~~~~~~~~~~~---~ 218 (412)
T 4dnj_A 168 GLKQE--G-----RENLLPYAGLVFNAFG---------PP------NELRQSAIERSAP----HQAYVAEQCQRPN---L 218 (412)
T ss_dssp TCCST--T-----GGGHHHHHHHHHHHTS---------CS------SHHHHHHHHTCHH----HHHHHHHHTSGGG---S
T ss_pred CCchh--h-----hhhhhhhhhccccccc---------cc------HHHHHHHHHHHHH----HHHHHHHHHHhhc---c
Confidence 44332 1 1122222222222111 00 0011111111111 2223333333221 1
Q ss_pred CCcHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHhhccC
Q 021726 270 QEDIVDVLLQIWKQRGSKVDITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 270 ~~dll~~ll~~~~~~~~~~~~t~~~i~~~~~~l~~a~~ 307 (308)
.+|.++.++....+++ .++++++.+++.++++||+
T Consensus 219 ~~~~~~~l~~~~~~~~---~l~~~e~~~~~~~l~~AG~ 253 (412)
T 4dnj_A 219 APGGFGACIHAFSDTG---EITPEEAPLLVRSLLSAGL 253 (412)
T ss_dssp CTTSHHHHHHHTTTTT---SSCTTHHHHHHHHHHHHSS
T ss_pred ccccchhhhHhhhhcc---chhHHHHHHHHHHHHhccc
Confidence 2355566665444332 6999999999999999996
No 76
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=99.54 E-value=9.6e-13 Score=119.81 Aligned_cols=219 Identities=11% Similarity=0.086 Sum_probs=145.1
Q ss_pred CCchHHHHHHHHhhC-CeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcccccccccCCcceEeccCChhHHHHH
Q 021726 51 SNPQNYFWRLSKQYG-PMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQKVSYNGLDVAFAPYNAYWREIR 129 (308)
Q Consensus 51 ~~~~~~~~~~~~~YG-~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~R 129 (308)
.+++..+.++.++.+ +++..-.|+ ..-+|+.++.+++|+.+ .+.|++++........ ..........+|+.|+++|
T Consensus 37 ~~~~~~~~~lr~~~~~~~~~~~~~g-g~W~vtr~~dv~~vl~d-~~~fs~~~~~~~~~~~-~~~~~~~~~~D~p~H~r~R 113 (417)
T 4dxy_A 37 DGYHEAWKKVQHPGIPDLIWTPFTG-GHWIATNGDTVKEVYSD-PTRFSSEVIFLPKEAG-EKAQMVPTKMDPPEHTPYR 113 (417)
T ss_dssp GCHHHHHHHHSCTTCCSEEEESSTT-SEEEECSHHHHHHHHTC-TTTEESSCCSSSTTSS-CSSCTTTTTCCTTTHHHHH
T ss_pred cChHHHHHHHHhhCCCCEEecCCCC-CEEEECCHHHHHHHHcC-chhccCCCcccccccc-cccccCcccCCcHHHHHHH
Confidence 467777777754433 455443333 46678999999999954 3578766532221111 1122233345899999999
Q ss_pred HHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HHHHHHHHHHHHhCCcccccccccchHHHHHH
Q 021726 130 KICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KSLTSSITCRIGFGKSYEVEDQGISERSRFGA 208 (308)
Q Consensus 130 r~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~ 208 (308)
|++ ++.|++++++++.|.+++.++++++.|.. +.++|+...+ ..+++.+++. ++|.... ....+.+
T Consensus 114 rll-~~~Fs~~~l~~~~~~i~~~~~~lld~l~~----~g~~D~v~~~a~~l~~~vi~~-llg~~~~-------d~~~~~~ 180 (417)
T 4dxy_A 114 KAL-DKGLNLAKIRKVEDKVREVASSLIDSFAA----RGECDFAAEYAELFPVHVFMA-LADLPLE-------DIPVLSE 180 (417)
T ss_dssp HHH-HHHHCHHHHHTTHHHHHHHHHHHHHHHHT----TSEEEHHHHTTTTHHHHHHHH-HTTCCGG-------GHHHHHH
T ss_pred HHh-hhhcCHHHHHHHHHHHHHHHHHHHHHhhh----cCCeeeHHHHHhhhHHHHHHH-HcCCCHH-------HHHHHHh
Confidence 996 89999999999999999999999999973 4468865554 5566666665 4676443 2333333
Q ss_pred HHHHHHhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCCCCcHHHHHHHhhhhcCCCC
Q 021726 209 LLTETQALVVGFFVTDYFPSIGWVDNITGMIRRLERNFKEFDAFHQELIEEHLDPARIKTDQEDIVDVLLQIWKQRGSKV 288 (308)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dll~~ll~~~~~~~~~~ 288 (308)
....+.... .. . ..........+.+.+.+++.++++++++. ..+|+++.|+++..+++
T Consensus 181 ~~~~~~~~~----------~~--~--~~~~~~~~~~~~~~~~~~~~~li~~rr~~-----~~ddl~s~L~~~~~~~~--- 238 (417)
T 4dxy_A 181 YARQMTRPE----------GN--T--PEEMATDLEAGNNGFYAYVDPIIRARVGG-----DGDDLITLMVNSEINGE--- 238 (417)
T ss_dssp HHHHHHSCC----------CS--S--HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----CCCSHHHHHHTCEETTE---
T ss_pred hhhhhcccc----------cc--C--hHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CccchhhhhccccccCC---
Confidence 333222100 00 0 11223455566777888888888887652 35799999998765443
Q ss_pred CCCHHHHHHHHHHHhhccC
Q 021726 289 DITWDHIKAVLMVKFHNQY 307 (308)
Q Consensus 289 ~~t~~~i~~~~~~l~~a~~ 307 (308)
.+|++++.+++..+++||+
T Consensus 239 ~~~~~e~~~~~~~ll~AG~ 257 (417)
T 4dxy_A 239 RIAHDKAQGLISLLLLGGL 257 (417)
T ss_dssp ECCHHHHHHHHHHHHHHTT
T ss_pred ccchhHHHHHHHHHHhhcc
Confidence 6999999999999999996
No 77
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=98.18 E-value=4e-09 Score=94.48 Aligned_cols=133 Identities=13% Similarity=0.060 Sum_probs=85.0
Q ss_pred CCCC-CCCCcccccccC-----CCCCCchHHHHHHHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcc-
Q 021726 32 LPPG-PRGLPFIGNLHQ-----FDYSNPQNYFWRLSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALL- 104 (308)
Q Consensus 32 lpPG-P~~~P~lGn~~~-----~~~~~~~~~~~~~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~- 104 (308)
+||| |++||++|+... + ..+++..+.++.++ ||+++. .+.+++++++.+++||.+ ..|+.++...
T Consensus 35 ~ppG~~~~~P~~G~~~~~~~~~~-~~dp~~~~~~lr~~--pV~~~~---~~~~vv~~~~~v~~vl~d--~~f~~~~~~~~ 106 (381)
T 2yjn_B 35 MIRGLHWGYGSNGDPYPMLLCGH-DDDPQRRYRSMRES--GVRRSR---TETWVVADHATARQVLDD--PAFTRATGRTP 106 (381)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHTC-CSCCHHHHHHHHHH--CEEECS---SSCEEECSHHHHHHHHHC--SSEESSCCCCC
T ss_pred CCCcccccccccCCchhhcCchh-ccCchHHHHHHHhC--CceeCC---CCEEEEcCHHHHHHHHcC--CCcCCCccccc
Confidence 5777 557899998643 3 45789999988755 998755 468999999999999986 3687654311
Q ss_pred cc-----cccccCCcceEeccCChhHHHHHHHHHHhhCChHHHhhhHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH-HH
Q 021726 105 SQ-----QKVSYNGLDVAFAPYNAYWREIRKICVVHLFNSNRVQSFRPIREGEVSILIEKVSRSAVASKPVNLSELM-KS 178 (308)
Q Consensus 105 ~~-----~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~ 178 (308)
.. ......+.++++ .+|+.| ++.|+ + .+.+++.++++++.|. | ++|+...+ ..
T Consensus 107 ~~~~~~~~~~~~~~~~l~~-~dg~~H--------~~~Ft-----~-~~~i~~~~~~ll~~~~-----g-~~Dl~~~~a~~ 165 (381)
T 2yjn_B 107 EWMRAAGAPPAEWAQPFRD-VHAASW--------EGEVP-----D-VGELAESFAGLLPGAG-----A-RLDLVGDFAWQ 165 (381)
T ss_dssp HHHHHHTCCHHHHTHHHHH-HHHCCC--------CSCCC-----C-CSCHHHHTSTTSCC------------CCCCCCTH
T ss_pred ccccccccccchhhhhhhh-CCchhh--------hhccC-----C-hHHHHHHHHHHHHhcc-----C-cchHHHHHHHH
Confidence 00 001001234444 368888 35677 3 6778888888888875 3 58887665 69
Q ss_pred HHHHHHHHHHhCCccc
Q 021726 179 LTSSITCRIGFGKSYE 194 (308)
Q Consensus 179 ~t~~vi~~~~fG~~~~ 194 (308)
+++++|+++ ||.+.+
T Consensus 166 l~~~vi~~l-~G~~~~ 180 (381)
T 2yjn_B 166 VPVQGMTAV-LGAAGV 180 (381)
T ss_dssp HHHHHHHTC------C
T ss_pred HHHHHHHHH-cCCCHH
Confidence 999999996 998765
No 78
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=86.07 E-value=3.9 Score=28.72 Aligned_cols=67 Identities=19% Similarity=0.348 Sum_probs=46.1
Q ss_pred CCCCCCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEe---C---CcCEEEecCHHHHHHHHH-hcCccCCCCC
Q 021726 32 LPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRL---G---SVPILVVSSAKMAEEVLK-THDLQFCSRP 101 (308)
Q Consensus 32 lpPGP~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~---g---~~~~vvi~~pe~ikevl~-~~~~~f~~Rp 101 (308)
+||.|...=++||+.. .-....+.++..+||+|..+.+ + +.-.|...+++.++.++. -++..+.+|+
T Consensus 3 ~~~~~~~~l~V~nlp~---~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 76 (115)
T 3lqv_A 3 LPPEVNRILYIRNLPY---KITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRY 76 (115)
T ss_dssp CCTTCCSEEEEESCCT---TCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCB
T ss_pred CCCCCCCEEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 5666655668898763 3355667788889999998887 2 245677789999988886 3554554443
No 79
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=84.07 E-value=4.6 Score=26.28 Aligned_cols=59 Identities=14% Similarity=0.189 Sum_probs=40.2
Q ss_pred ccccccCCCCCC----chHHHHHHHHhhCCeEEEEeC-------CcCEEEecCHHHHHHHHHh-cCccCCCC
Q 021726 41 FIGNLHQFDYSN----PQNYFWRLSKQYGPMVSLRLG-------SVPILVVSSAKMAEEVLKT-HDLQFCSR 100 (308)
Q Consensus 41 ~lGn~~~~~~~~----~~~~~~~~~~~YG~v~~~~~g-------~~~~vvi~~pe~ikevl~~-~~~~f~~R 100 (308)
++||++.- ... ..+.+.+...+||+|..+.+. +.-.|...+++.++.++.. ++..+.+|
T Consensus 5 ~V~nLp~~-~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 5 VVDNVPQV-GPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp EEESCCCC-CTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred EEeCCCCC-cHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 57777642 222 346778888899999998875 2345667899999998863 44444444
No 80
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.82 E-value=3.2 Score=28.88 Aligned_cols=60 Identities=10% Similarity=0.175 Sum_probs=42.0
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeC--------CcCEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG--------SVPILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g--------~~~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
-=++||++. .-....+.++..+||+|..+.+. +.-.|...+++.++.++..++..+.+|+
T Consensus 13 ~lfV~~Lp~---~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~ 80 (103)
T 1s79_A 13 SVYIKGFPT---DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD 80 (103)
T ss_dssp CEEEECCCT---TCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTT
T ss_pred EEEEECCCC---CCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEE
Confidence 346788753 33556777888899999888864 2356777899999999875554554443
No 81
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=81.03 E-value=2.5 Score=26.99 Aligned_cols=57 Identities=12% Similarity=0.260 Sum_probs=38.9
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHhcCccCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKTHDLQFCSR 100 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~~~~~f~~R 100 (308)
++||++. .-..+.+.++..+||+|..+.+.. .-.|...+++.++.++..++..+.+|
T Consensus 3 ~v~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~ 68 (75)
T 1iqt_A 3 FVGGLSP---DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLS 68 (75)
T ss_dssp EESCCCS---SCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTB
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCE
Confidence 4566542 235566778888999998888632 34566789999999987655444444
No 82
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.73 E-value=5.2 Score=27.56 Aligned_cols=61 Identities=23% Similarity=0.259 Sum_probs=45.0
Q ss_pred cccccccCCCCC-C-chHHHHHHHHhhC-CeEEEEeCCcCEEEecCHHHHHHHHHh-cCccCCCCCC
Q 021726 40 PFIGNLHQFDYS-N-PQNYFWRLSKQYG-PMVSLRLGSVPILVVSSAKMAEEVLKT-HDLQFCSRPA 102 (308)
Q Consensus 40 P~lGn~~~~~~~-~-~~~~~~~~~~~YG-~v~~~~~g~~~~vvi~~pe~ikevl~~-~~~~f~~Rp~ 102 (308)
-.+||+..- .+ + ....+.++..+|| +|..+ .|++-+|.-.+.+.++.++.. ++..+-+||-
T Consensus 12 lYV~NL~~~-~~~~~lk~~L~~lF~~yGG~Vl~V-tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 12 LYVYNLPAN-KDGKSVSNRLRRLSDNCGGKVLSI-TGCSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp EEEESCCTT-SCHHHHHHHHHHHHHTTTCCEEEC-CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred EEEeCCCCc-CCHHHHHHHHHHHHHHcCCeeEEE-ecCEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 458998753 22 1 1245778889995 99888 678999999999999998864 6666667774
No 83
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=78.07 E-value=4.9 Score=25.57 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=39.0
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
++||++. .-..+.+.++..+||+|..+.+-. .-.|...+++.++.++.-++..+.+|+
T Consensus 3 ~v~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 69 (75)
T 2mss_A 3 FVGGLSV---NTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKM 69 (75)
T ss_dssp EEECCCS---SCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCC
T ss_pred EEecCCC---CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEE
Confidence 3566542 335566778888999998888642 234566799999999865555555544
No 84
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=74.77 E-value=12 Score=26.06 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=42.6
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---cCEEEecCHHHHHHHHHh-cCccCCCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---VPILVVSSAKMAEEVLKT-HDLQFCSRPA 102 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---~~~vvi~~pe~ikevl~~-~~~~f~~Rp~ 102 (308)
=++||+.. .-....+.++..+||+|..+.+.. .-+|...+++.++.++.. ++..+.+|+.
T Consensus 13 l~V~nLp~---~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 76 (111)
T 1whx_A 13 ILAKNLPA---GTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPL 76 (111)
T ss_dssp EEEESCCT---TCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Confidence 36777653 335667788888999999988742 456667899999888863 5566666663
No 85
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=73.56 E-value=7.3 Score=26.67 Aligned_cols=58 Identities=24% Similarity=0.251 Sum_probs=39.7
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
++||++. .-..+.+.++..+||+|..+.+.. .=.|-..+++.++.++.. ++..+.+|+
T Consensus 23 fV~nLp~---~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~ 90 (99)
T 4fxv_A 23 IVNYLPQ---NMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKT 90 (99)
T ss_dssp EEESCCT---TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 6788753 234567778888999998887632 125667899999988864 444454443
No 86
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=72.18 E-value=12 Score=25.72 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=43.7
Q ss_pred CCcccccccCCCCCC----chHHHHHHHHhhCCeEEEEeC-------CcCEEEecCHHHHHHHHHh-cCccCCCC
Q 021726 38 GLPFIGNLHQFDYSN----PQNYFWRLSKQYGPMVSLRLG-------SVPILVVSSAKMAEEVLKT-HDLQFCSR 100 (308)
Q Consensus 38 ~~P~lGn~~~~~~~~----~~~~~~~~~~~YG~v~~~~~g-------~~~~vvi~~pe~ikevl~~-~~~~f~~R 100 (308)
..=++||++.- ... ....+.++..+||+|..+.+- +.-.|...+++.++.++.. ++..+.+|
T Consensus 16 ~~l~V~nLp~~-~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 16 SVIVVDNVPQV-GPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp SEEEEESCCCC-CTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CEEEEeCCCcc-hhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34578988743 222 457788888999999998875 3446677899988888874 55556555
No 87
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.97 E-value=13 Score=25.05 Aligned_cols=60 Identities=8% Similarity=0.201 Sum_probs=42.9
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
-=++||+.. .-..+.+.++..+||+|..+.+-. .-.|...+++.++.++.-++..+.+|+
T Consensus 12 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 80 (99)
T 2dgs_A 12 KIFVGGIPH---NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKK 80 (99)
T ss_dssp EEEEESCCS---SCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCB
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeE
Confidence 346788753 235566788888999998888732 245667899999999876666666665
No 88
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.19 E-value=18 Score=24.01 Aligned_cols=61 Identities=16% Similarity=0.356 Sum_probs=42.7
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHh-cCccCCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKT-HDLQFCSRPA 102 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~-~~~~f~~Rp~ 102 (308)
.=++||+.. .-..+.+.++..+||+|..+.+-. .-.|...+++.++.++.. ++..+.+|+.
T Consensus 7 ~l~v~nlp~---~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (95)
T 2dnz_A 7 GLYVGSLHF---NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 77 (95)
T ss_dssp EEEEESCCT---TCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 446788753 335566788888999998888643 235667899999998873 5556666653
No 89
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=70.62 E-value=16 Score=25.85 Aligned_cols=60 Identities=13% Similarity=0.309 Sum_probs=42.8
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeC---------CcCEEEecCHHHHHHHHHh-cCccCCCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG---------SVPILVVSSAKMAEEVLKT-HDLQFCSRPA 102 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g---------~~~~vvi~~pe~ikevl~~-~~~~f~~Rp~ 102 (308)
=++||+.. .-....+.++..+||+|..+.+- +.-+|...+++.++.++.. ++..+.+++.
T Consensus 25 l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 25 LFVTGVHE---EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp EEEESCCT---TCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 46777653 23556777888899999988873 2346777899999999863 6666666653
No 90
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=70.44 E-value=27 Score=25.06 Aligned_cols=61 Identities=11% Similarity=0.160 Sum_probs=41.6
Q ss_pred CCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 38 GLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 38 ~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
..-++||+.. .-..+.+.++..+||+|..+.+-. .-+|...+++.++.++.. ++..+.+|+
T Consensus 47 ~~l~V~nLp~---~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~ 117 (129)
T 2kxn_B 47 CCLGVFGLSL---YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 117 (129)
T ss_dssp SCBCEETCTT---SCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3446787653 234566788888999999888731 235666899999998874 454555554
No 91
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=69.74 E-value=13 Score=25.03 Aligned_cols=61 Identities=13% Similarity=0.294 Sum_probs=43.3
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeC-CcCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG-SVPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g-~~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
-=++||+.. ..-..+.+.++..+||+|..+.+. +.-.|...+++.++.++.. ++..+.+|+
T Consensus 12 ~l~V~nlp~--~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (96)
T 2kvi_A 12 RLFIGNLPL--KNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKK 74 (96)
T ss_dssp EEEEESSTT--SCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTT
T ss_pred EEEEeCCCc--ccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 346788763 033556778888899999888864 3466777899999999874 555565655
No 92
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=69.28 E-value=10 Score=26.59 Aligned_cols=59 Identities=17% Similarity=0.294 Sum_probs=41.1
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC-------cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS-------VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~-------~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
=++||+.. .-..+.+.++..+||+|..+++-. .=.|-..+++.++.++.. ++..+.+|+
T Consensus 8 lfV~nLp~---~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~ 74 (115)
T 4f25_A 8 IFIKNLDK---SIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 74 (115)
T ss_dssp EEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEECCCCC---CCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 47888753 235567788889999998877532 236778899999998864 555555543
No 93
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=68.99 E-value=15 Score=25.04 Aligned_cols=59 Identities=14% Similarity=0.318 Sum_probs=40.7
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeC---------CcCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG---------SVPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g---------~~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
=++||+.. .-..+.+.++..+||+|..+.+. +.-.|...+++.++.++.. ++..+.+++
T Consensus 26 l~V~nlp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 94 (106)
T 1p27_B 26 LFVTGVHE---EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 94 (106)
T ss_dssp EEEECCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEeCCCC---CCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 36777653 33556678888999999888863 2245667899999998864 555555554
No 94
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.35 E-value=14 Score=24.59 Aligned_cols=64 Identities=14% Similarity=0.248 Sum_probs=42.1
Q ss_pred CCCCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeC------C---cCEEEecCHHHHHHHHHh-cCccCCCC
Q 021726 34 PGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG------S---VPILVVSSAKMAEEVLKT-HDLQFCSR 100 (308)
Q Consensus 34 PGP~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g------~---~~~vvi~~pe~ikevl~~-~~~~f~~R 100 (308)
|.|...=++||+.. .-..+.+.++..+||+|..+.+- . .-.|...+++.++.++.. ++..+.+|
T Consensus 12 ~~~~~~l~v~nlp~---~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 12 PDPNCCLGVFGLSL---YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp CCGGGCEEEESCCS---SCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCEEEEECCCC---CCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 33444457888763 23556778888899999888863 1 235666899999998864 44344333
No 95
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=68.15 E-value=12 Score=25.41 Aligned_cols=58 Identities=17% Similarity=0.386 Sum_probs=40.1
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeC----CcCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG----SVPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g----~~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
++||+.. .-..+.+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+++
T Consensus 4 ~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 66 (101)
T 2hvz_A 4 YVGNLGT---GAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSR 66 (101)
T ss_dssp EEECCCS---SCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCC
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcE
Confidence 4666653 23556677888899998888763 2456667899999998864 455566665
No 96
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=67.98 E-value=19 Score=24.07 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=41.3
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
.=++||++. .-..+.+.++..+||+|..+.+-. .-+|...+++.++.++.. ++..+.+|+
T Consensus 10 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (99)
T 1whw_A 10 RLFVRNLSY---TSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRM 79 (99)
T ss_dssp EEEEECCCT---TCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 346787753 235567788888999999988742 235667899999998843 444555554
No 97
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.90 E-value=20 Score=24.21 Aligned_cols=65 Identities=12% Similarity=0.173 Sum_probs=44.2
Q ss_pred CCCCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeC-------CcCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 34 PGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG-------SVPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 34 PGP~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g-------~~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
+-+..-=++||+.. .-..+.+.++..+||+|..+.+- +.-+|...+++.++.++.. ++..+.+++
T Consensus 12 ~~~~~~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2d9p_A 12 RYQVVNLYVKNLDD---GIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 84 (103)
T ss_dssp CSSCCCEEEECCCT---TCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCEEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 33444557888763 23456677788899999888764 2345667899999998874 555565555
No 98
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=66.48 E-value=19 Score=25.14 Aligned_cols=59 Identities=7% Similarity=0.040 Sum_probs=41.7
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeC--CcCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG--SVPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g--~~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
=++||+..- -..+.+.++..+||+|..+.+- +.-+|...+++.++.++.. ++..+.+|+
T Consensus 19 l~V~nLp~~---~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 19 VVVSGLPPS---GSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp EEEEECCSS---CCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred EEEeCCCCC---CCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 368887632 2445567778899999988875 3456777899999988863 555566654
No 99
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=66.43 E-value=14 Score=25.08 Aligned_cols=60 Identities=10% Similarity=0.166 Sum_probs=42.3
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC-cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS-VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~-~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
.=++||+.. .-..+.+.++..+||+|..+.+-. .-+|-..+++.++.++.. ++..+.+++
T Consensus 13 ~l~V~nl~~---~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (103)
T 2dgu_A 13 VLFVRNLAN---TVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGEN 74 (103)
T ss_dssp CEEEECCCT---TCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCE
Confidence 346788753 235567778888999999988654 456667899999998874 554555543
No 100
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=66.39 E-value=19 Score=23.23 Aligned_cols=60 Identities=10% Similarity=0.248 Sum_probs=40.5
Q ss_pred CCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHh-cCccCCCC
Q 021726 38 GLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKT-HDLQFCSR 100 (308)
Q Consensus 38 ~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~-~~~~f~~R 100 (308)
..=++||++. .-..+.+.++..+||+|..+.+.. .-.|...+++.++.++.. ++..+.+|
T Consensus 8 ~~l~V~nl~~---~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 77 (85)
T 3mdf_A 8 RVLYVGGLAE---EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 77 (85)
T ss_dssp SEEEEECCCT---TCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CEEEEECCCC---CCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 3447888763 234567778888999999988621 236677899999988853 44444433
No 101
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.88 E-value=24 Score=23.16 Aligned_cols=61 Identities=10% Similarity=0.141 Sum_probs=42.8
Q ss_pred CCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC-cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 38 GLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS-VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 38 ~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~-~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
.-=++||++. .-....+.++..+||+|..+.+-. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 10 ~~l~V~nlp~---~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 72 (90)
T 2dnp_A 10 WKIFVGNVSA---ACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKR 72 (90)
T ss_dssp CCEEEESCCT---TCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3447888763 235566778888999999988764 456667899999988863 555555544
No 102
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=65.67 E-value=16 Score=23.81 Aligned_cols=58 Identities=17% Similarity=0.259 Sum_probs=39.7
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeC----------CcCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG----------SVPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g----------~~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
++||+.. .-..+.+.++..+||+|..+.+- +.-.|...+++.++.++.. ++..+.+|+
T Consensus 8 ~V~nlp~---~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (88)
T 4a8x_A 8 HIGRLTR---NVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQE 76 (88)
T ss_dssp EEECCCT---TCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCC---CCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeE
Confidence 5777653 23556677788899999888862 1345667799999999874 555555443
No 103
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.57 E-value=22 Score=24.05 Aligned_cols=60 Identities=10% Similarity=0.140 Sum_probs=41.6
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeC-------CcCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG-------SVPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g-------~~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
-=++||+.. .-..+.+.++..+||+|..+.+- +.-+|...+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~---~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cq3_A 17 RLHVSNIPF---RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK 84 (103)
T ss_dssp EEEEESCCT---TCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 346888753 33556677888899999888863 2346667899999998864 555555554
No 104
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=65.21 E-value=18 Score=24.83 Aligned_cols=58 Identities=12% Similarity=0.242 Sum_probs=40.1
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeC---------CcCEEEecCHHHHHHHHHh-cCccCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG---------SVPILVVSSAKMAEEVLKT-HDLQFCSR 100 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g---------~~~~vvi~~pe~ikevl~~-~~~~f~~R 100 (308)
=++||+.. .-....+.++..+||+|..+.+. +.-.|...+++.++.++.. ++..+.+|
T Consensus 29 l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 96 (110)
T 1oo0_B 29 LFVTSIHE---EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 96 (110)
T ss_dssp EEEESCCT---TCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 36787653 33556678888999999998874 2346667899999988863 44444444
No 105
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=65.10 E-value=12 Score=25.22 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=41.5
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeC------------CcCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG------------SVPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g------------~~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
.=++||+.. .-..+.+.++..+||+|..+.+. +.-+|...+++.++.++.. ++..+.+|+
T Consensus 7 ~l~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (98)
T 2cpf_A 7 GLFIKNLNF---STTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHK 79 (98)
T ss_dssp CEEEESCCT---TCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 346788763 23556777888899999887764 2345667899999999875 555555543
No 106
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.06 E-value=27 Score=23.39 Aligned_cols=60 Identities=17% Similarity=0.182 Sum_probs=41.4
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC--------cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS--------VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~--------~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
.=++||+.. .-..+.+.++..+||+|..+.+-. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 19 ~l~v~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 19 KLFISGLPF---SCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp CEEEESCCT---TCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 446788753 235566788888999998888642 346677899999998854 555555544
No 107
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=64.97 E-value=10 Score=24.43 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=38.8
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
++||++. .-..+.+.++..+||+|..+.+-. .-.|...+++.++.++.. ++..+.+|+
T Consensus 5 ~V~nlp~---~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 72 (83)
T 3md1_A 5 FVGDLNV---NVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 72 (83)
T ss_dssp EEECCCT---TCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 4666642 234566777888999998887531 236677899999998864 554454443
No 108
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.92 E-value=25 Score=22.63 Aligned_cols=51 Identities=12% Similarity=0.225 Sum_probs=37.2
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---cCEEEecCHHHHHHHHHh
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---VPILVVSSAKMAEEVLKT 92 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---~~~vvi~~pe~ikevl~~ 92 (308)
-=++||+.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 14 ~l~V~~l~~---~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~ 67 (85)
T 2ytc_A 14 TLYVGGLGD---TITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEK 67 (85)
T ss_dssp CEEEECCTT---TSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHT
T ss_pred EEEEcCCCC---CCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHH
Confidence 346788753 335567778888999998888643 355666799999999864
No 109
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.85 E-value=18 Score=24.26 Aligned_cols=59 Identities=12% Similarity=0.105 Sum_probs=39.4
Q ss_pred cccccccCCCCCCchHHHH----HHHHhhCCeEEEEeC------CcCEEEecCHHHHHHHHH-hcCccCCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFW----RLSKQYGPMVSLRLG------SVPILVVSSAKMAEEVLK-THDLQFCSRP 101 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~----~~~~~YG~v~~~~~g------~~~~vvi~~pe~ikevl~-~~~~~f~~Rp 101 (308)
=++||+..- -..+.+. ++..+||+|..+.+- +.-.|...+++.++.++. -++..+.+|+
T Consensus 12 l~V~nL~~~---~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 12 VQVSNIDYR---LSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp EEEESCCTT---SCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred EEEECCCCC---CCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 468887632 2333444 788899999998875 234667789999998886 3444455443
No 110
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.82 E-value=31 Score=23.31 Aligned_cols=60 Identities=20% Similarity=0.404 Sum_probs=42.9
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
-=++||+.. .-..+.+.++..+||+|..+.+-. .-.|...+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 17 TVYVGGLDE---KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp EEEEECCCT---TCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 346788753 335567788888999999988743 235677899999999875 555565555
No 111
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=63.59 E-value=29 Score=23.23 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=39.3
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEE--------EEeCC---------cCEEEecCHHHHHHHHHh-cCccCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVS--------LRLGS---------VPILVVSSAKMAEEVLKT-HDLQFCSR 100 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~--------~~~g~---------~~~vvi~~pe~ikevl~~-~~~~f~~R 100 (308)
.=++||+.. .-..+.+.++..+||.|.. +.+-. .-.|...+++.++.++.. ++..+.+|
T Consensus 15 ~l~V~nLp~---~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~ 91 (99)
T 2la6_A 15 TIFVQGLGE---NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 91 (99)
T ss_dssp EEEEECCCS---SCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred EEEEeCCCC---CCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 346888753 3355677888889999866 55421 235667899999988863 55555554
Q ss_pred C
Q 021726 101 P 101 (308)
Q Consensus 101 p 101 (308)
+
T Consensus 92 ~ 92 (99)
T 2la6_A 92 P 92 (99)
T ss_dssp B
T ss_pred E
Confidence 3
No 112
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=63.16 E-value=16 Score=25.29 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=40.8
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHhcCccCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKTHDLQFCSR 100 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~~~~~f~~R 100 (308)
-=++||+.. .-..+.+.++..+||+|..+.+-. .-+|...+++.++.++...+..+.+|
T Consensus 27 ~lfV~nLp~---~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~ 94 (109)
T 2rs2_A 27 KMFIGGLSW---QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSK 94 (109)
T ss_dssp CEEEESCCT---TCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCE
Confidence 346788753 334566778888999998888743 23677789999999987554334333
No 113
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.66 E-value=20 Score=24.64 Aligned_cols=59 Identities=8% Similarity=0.192 Sum_probs=40.8
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeC---CcCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG---SVPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g---~~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
=++||+.. .-....+.++..+||+|..+.+- +.-+|...+++.+..++.. ++..+.+++
T Consensus 28 l~V~nl~~---~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 90 (109)
T 1x4g_A 28 VYCGGIAS---GLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHV 90 (109)
T ss_dssp EEEECCSS---CCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 36788753 23556677888899999888874 3456667899999888854 554555443
No 114
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=62.25 E-value=11 Score=24.62 Aligned_cols=58 Identities=12% Similarity=0.167 Sum_probs=38.7
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
++||+.. .-..+.+.++..+||+|..+.+-. .-.|...+++.++.++.-++..+.+|+
T Consensus 10 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~ 76 (89)
T 3ucg_A 10 YVGNVDY---GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQ 76 (89)
T ss_dssp EEESCCT---TCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEE
T ss_pred EEeCCCC---CCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcE
Confidence 4676653 235566788888999998887532 235667799999888854555554443
No 115
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.06 E-value=17 Score=24.71 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=44.4
Q ss_pred CCCCCCCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC----------cCEEEecCHHHHHHHHHhcCccCCCC
Q 021726 31 ALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS----------VPILVVSSAKMAEEVLKTHDLQFCSR 100 (308)
Q Consensus 31 ~lpPGP~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~----------~~~vvi~~pe~ikevl~~~~~~f~~R 100 (308)
+.|+.|..-=++||+.. .-..+.+.++..+|| |..+.+-. .-.|...+++.++.++.-++..+.+|
T Consensus 9 ~~~~~~~~~l~V~nlp~---~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~ 84 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPY---DVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNK 84 (104)
T ss_dssp CCCSSSCEEEEEESCCS---SCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTE
T ss_pred CCCCCCCCEEEEeCCCC---cCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCc
Confidence 34444444456888753 235566778888999 98888632 23567789999999985455555555
Q ss_pred C
Q 021726 101 P 101 (308)
Q Consensus 101 p 101 (308)
+
T Consensus 85 ~ 85 (104)
T 1wi8_A 85 R 85 (104)
T ss_dssp E
T ss_pred E
Confidence 4
No 116
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.01 E-value=14 Score=24.45 Aligned_cols=60 Identities=15% Similarity=0.296 Sum_probs=41.9
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC-cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS-VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~-~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
-=++||+.. .-..+.+.++..+||+|..+.+-. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 12 ~l~V~nLp~---~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 12 KLHVGNISP---TCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp EEEEESCCS---SCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 346888753 335667788888999998888664 345666799999988854 555555543
No 117
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=61.88 E-value=16 Score=23.80 Aligned_cols=58 Identities=14% Similarity=0.140 Sum_probs=39.3
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHh-cCccCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKT-HDLQFCSR 100 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~-~~~~f~~R 100 (308)
=++||+.. .-..+.+.++..+||+|..+.+-. .-.|-..+++.++.++.. ++..+.+|
T Consensus 9 l~v~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 76 (87)
T 3bs9_A 9 VFVGDLSP---EITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 76 (87)
T ss_dssp EEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 36788753 335566788888999998887632 235667899999998864 44444433
No 118
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=61.45 E-value=21 Score=24.14 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=36.3
Q ss_pred CCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---cCEEEecCHHHHHHHHH
Q 021726 38 GLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---VPILVVSSAKMAEEVLK 91 (308)
Q Consensus 38 ~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---~~~vvi~~pe~ikevl~ 91 (308)
.|=++||+.. .-....+.++..+||||..+++.. .-.|-..+++.++.+..
T Consensus 8 ~wL~VgNL~~---~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~ 61 (89)
T 2wbr_A 8 SWLLLKNLTA---QIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQM 61 (89)
T ss_dssp CEEEEECCCT---TCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred ceEEEeCCCc---cCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHH
Confidence 5667898763 335577888889999999988653 35666678866666553
No 119
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=61.45 E-value=23 Score=24.77 Aligned_cols=60 Identities=15% Similarity=0.252 Sum_probs=42.0
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC--------cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS--------VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~--------~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
-=++||+.. .-..+.+.++..+||+|..+.+-. .-.|...+++.++.++.. ++..+.+++
T Consensus 9 ~l~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 77 (116)
T 2fy1_A 9 KLFIGGLNR---ETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKA 77 (116)
T ss_dssp EEEEECCTT---TCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 346788753 335566788888999988877643 345667899999998864 555566665
No 120
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=61.26 E-value=11 Score=24.71 Aligned_cols=56 Identities=16% Similarity=0.299 Sum_probs=38.7
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHhcCccC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKTHDLQF 97 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~~~~~f 97 (308)
-=++||+.. .-....+.++..+||+|..+.+-. .-.|...+++.++.++...+..+
T Consensus 13 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~ 77 (87)
T 3s7r_A 13 KMFVGGLSW---DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRL 77 (87)
T ss_dssp EEEEECCCT---TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEE
Confidence 447888763 335667778888999998887631 23566779999999886544333
No 121
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=61.15 E-value=42 Score=24.67 Aligned_cols=60 Identities=13% Similarity=0.191 Sum_probs=42.6
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCc---------CEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSV---------PILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~---------~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
.-++||++. .-..+.+.++..+||+|..+.+... -.|-..+.+.++.++.. ++..+.+|+
T Consensus 72 ~l~v~nl~~---~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 141 (158)
T 2kn4_A 72 SLKVDNLTY---RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 141 (158)
T ss_dssp EEEEESCCT---TCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 346787653 2355667788889999999887542 35677899999999975 555566654
No 122
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=60.92 E-value=46 Score=24.30 Aligned_cols=60 Identities=17% Similarity=0.324 Sum_probs=42.0
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeC----CcCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG----SVPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g----~~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
-=++||++.- -....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 75 ~l~V~nl~~~---~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 139 (150)
T 2i2y_A 75 KVYVGNLGNN---GNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCR 139 (150)
T ss_dssp EEEEESCCSC---CSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSC
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3468887632 2445677788899999988874 3456677899999988863 555565555
No 123
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=60.12 E-value=14 Score=25.57 Aligned_cols=58 Identities=16% Similarity=0.356 Sum_probs=40.0
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeC-CcCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG-SVPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g-~~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
++||+.. .-..+.+.++..+||+|..+.+- +.-+|...+++.++.++.. ++..+.+|+
T Consensus 35 ~V~nLp~---~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 35 FVRPFPL---DVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp EECSSCT---TCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEECCCC---CCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 5777653 23456678888899998887764 4566777899999988864 554554443
No 124
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=59.59 E-value=16 Score=25.62 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=41.9
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhC-CeEEEEeC-----CcCEEEecCHHHHHHHHHh-cCccCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYG-PMVSLRLG-----SVPILVVSSAKMAEEVLKT-HDLQFCSR 100 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG-~v~~~~~g-----~~~~vvi~~pe~ikevl~~-~~~~f~~R 100 (308)
-=++||+.. .-..+.+.++..+|| .|..+.+. +.-.|...+++.++.++.+ ++..+.+|
T Consensus 30 ~l~VgnLp~---~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr 95 (111)
T 2jvr_A 30 RITMKNLPE---GCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGS 95 (111)
T ss_dssp EEEEECSSC---CCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred EEEEECCCC---CCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 347888763 345677888889999 78887773 3567778899999998864 44445444
No 125
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=59.30 E-value=25 Score=23.34 Aligned_cols=59 Identities=12% Similarity=0.343 Sum_probs=39.7
Q ss_pred CcccccccCCCCCCchHH----HHHHHHhhCCeEEEEeC------CcCEEEecCHHHHHHHHHh-cCccCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNY----FWRLSKQYGPMVSLRLG------SVPILVVSSAKMAEEVLKT-HDLQFCSR 100 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~----~~~~~~~YG~v~~~~~g------~~~~vvi~~pe~ikevl~~-~~~~f~~R 100 (308)
.=++||+..- -..+. +.++..+||+|..+.+- +.-.|-..+++.++.++.. ++..+.+|
T Consensus 10 ~l~V~nLp~~---~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 10 TIYINNLNEK---IKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp EEEEESCCTT---SCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEEeCCCCC---CCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 3468887632 23333 34888899999988765 4456778899999988864 44444443
No 126
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=59.11 E-value=35 Score=22.32 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=40.8
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeC-------CcCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG-------SVPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g-------~~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
=++||+.. .-..+.+.++..+||+|..+.+- +.-+|-..+++.++.++.. ++..+.+|+
T Consensus 11 l~V~nlp~---~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 11 IFVRNLPF---DFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp EEECSCCT---TCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 36788753 34566778888899998887753 2345667799999988864 555555554
No 127
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=58.79 E-value=39 Score=22.83 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=42.9
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCc----------CEEEecCHHHHHHHHHh--cCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSV----------PILVVSSAKMAEEVLKT--HDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~----------~~vvi~~pe~ikevl~~--~~~~f~~Rp 101 (308)
.=++||+.. .-....+.++..+||+|..+.+-.. -+|...+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 17 KILVRNIPF---QANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp CEEEESCCT---TCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred EEEEeCCCC---cCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 346888763 3355667888889999999887433 35666799999998875 566666665
No 128
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=58.28 E-value=16 Score=25.36 Aligned_cols=69 Identities=12% Similarity=0.041 Sum_probs=42.7
Q ss_pred CCCCCCCcccccccCCC--CCCchHHHHHHHHhhCCeEEEEeCC----------cCEEEecCHHHHHHHHHh-cCccCCC
Q 021726 33 PPGPRGLPFIGNLHQFD--YSNPQNYFWRLSKQYGPMVSLRLGS----------VPILVVSSAKMAEEVLKT-HDLQFCS 99 (308)
Q Consensus 33 pPGP~~~P~lGn~~~~~--~~~~~~~~~~~~~~YG~v~~~~~g~----------~~~vvi~~pe~ikevl~~-~~~~f~~ 99 (308)
.|.|...=+++|+..-. ..+..+.+.+...+||+|..+++.. .=.|-..+++.++.+... ++..|.+
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 34455566788876310 2234567777778999998887632 124556788888877753 5556665
Q ss_pred CC
Q 021726 100 RP 101 (308)
Q Consensus 100 Rp 101 (308)
|+
T Consensus 84 r~ 85 (105)
T 2pe8_A 84 RV 85 (105)
T ss_dssp EE
T ss_pred cE
Confidence 54
No 129
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.18 E-value=21 Score=24.28 Aligned_cols=60 Identities=20% Similarity=0.244 Sum_probs=42.0
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
-=++||+.. .-..+.+.++..+||+|..+.+-. .-+|...+++.++.++..++..+.+|+
T Consensus 18 ~l~V~nlp~---~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 86 (105)
T 2dh8_A 18 KLFVGGLDW---STTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRN 86 (105)
T ss_dssp EECCBSCCT---TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 446788753 335567778888999998877633 235667899999999877655555554
No 130
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=57.88 E-value=11 Score=23.84 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=36.4
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
++||++. .-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++......+.+|+
T Consensus 4 ~v~nlp~---~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 70 (77)
T 1uaw_A 4 FIGGLSW---QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKT 70 (77)
T ss_dssp EEESCCS---SCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCC
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEE
Confidence 4677653 234456777888999987777532 224455688888888865444444443
No 131
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=57.79 E-value=14 Score=26.14 Aligned_cols=58 Identities=9% Similarity=0.187 Sum_probs=39.3
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
++||+.. .-..+.+.++..+||+|..+.+-. .-+|...+.+.++.++.-++..+.+++
T Consensus 40 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 106 (124)
T 2jwn_A 40 YVGNVDY---GSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRT 106 (124)
T ss_dssp EEEEECT---TCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEE
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 5677652 234567788888999998877632 236677899999999844555555544
No 132
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=56.33 E-value=23 Score=23.42 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=36.6
Q ss_pred CCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeC----CcCEEEecCHHHHHHH
Q 021726 36 PRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG----SVPILVVSSAKMAEEV 89 (308)
Q Consensus 36 P~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g----~~~~vvi~~pe~ikev 89 (308)
|...=++||+.. .-..+.+.+...+||+|..+.+- +.-.|...+++.++.+
T Consensus 10 ~~~~l~V~~Lp~---~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 10 HGSKVFVGRCTE---DMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp -CCEEEEESCCT---TCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH
T ss_pred CCCEEEEeCCCC---CCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH
Confidence 334457888763 33566778888899999999875 3456777899998853
No 133
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.10 E-value=31 Score=23.00 Aligned_cols=58 Identities=9% Similarity=0.152 Sum_probs=40.0
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
-=++||+ . -..+.+.++..+||+|..+.++. .-.|...+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~n~-~----~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 78 (97)
T 1x5p_A 17 TLYVYGE-D----MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 78 (97)
T ss_dssp EEEEECS-S----CCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred EEEEcCC-C----CCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 3467873 2 24566778889999999999863 345666799999998854 444454443
No 134
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=55.94 E-value=35 Score=22.88 Aligned_cols=50 Identities=16% Similarity=0.404 Sum_probs=36.6
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC-cCEEEecCHHHHHHHHH
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS-VPILVVSSAKMAEEVLK 91 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~-~~~vvi~~pe~ikevl~ 91 (308)
=++||+.. ..-..+.+.++..+||+|..+.+.. .-.|...+++.++.++.
T Consensus 25 l~V~nLp~--~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~ 75 (97)
T 2xnq_A 25 LFIGNLPL--KNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIE 75 (97)
T ss_dssp EEEESCCS--SCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCc--ccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHH
Confidence 36787753 0235566788888999999988753 45667789999998886
No 135
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.92 E-value=35 Score=22.68 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=41.9
Q ss_pred CCCCcccccccCCCCCCchHHHHHHHHhhCCeE-EEEeCC---------cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 36 PRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMV-SLRLGS---------VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 36 P~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~-~~~~g~---------~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
|..-=++||+.. .-..+.+.++..+||+|. .+.+-. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 8 ~~~~l~V~nLp~---~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 8 MAASLWMGDLEP---YMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp SSSEEEECSCCT---TCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CccEEEEeCCCC---CCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 333447888763 235566778888999988 776532 235666799999999863 444555554
No 136
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=55.91 E-value=27 Score=23.63 Aligned_cols=61 Identities=11% Similarity=0.127 Sum_probs=40.2
Q ss_pred CcccccccCCCC---CCchHHHHHHHHhhCCeEEEEeC---------CcCEEEecCHHHHHHHHHh-cCccCCC
Q 021726 39 LPFIGNLHQFDY---SNPQNYFWRLSKQYGPMVSLRLG---------SVPILVVSSAKMAEEVLKT-HDLQFCS 99 (308)
Q Consensus 39 ~P~lGn~~~~~~---~~~~~~~~~~~~~YG~v~~~~~g---------~~~~vvi~~pe~ikevl~~-~~~~f~~ 99 (308)
.=++||++.... .-..+.+.++..+||+|..+++. +.-.|...+++.++.++.. ++..+.+
T Consensus 8 ~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 8 YIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp EEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred EEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 346777764311 12345677788899999998874 2346777899999988853 4444544
No 137
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.49 E-value=44 Score=22.43 Aligned_cols=65 Identities=14% Similarity=0.245 Sum_probs=43.2
Q ss_pred CCCCCCcccccccCCCCCCchHHHHHHHHh-hCCeEEEEeC--------CcCEEEecCHHHHHHHHHh-cCcc-CCCCC
Q 021726 34 PGPRGLPFIGNLHQFDYSNPQNYFWRLSKQ-YGPMVSLRLG--------SVPILVVSSAKMAEEVLKT-HDLQ-FCSRP 101 (308)
Q Consensus 34 PGP~~~P~lGn~~~~~~~~~~~~~~~~~~~-YG~v~~~~~g--------~~~~vvi~~pe~ikevl~~-~~~~-f~~Rp 101 (308)
+.|..-=++||+.. .-..+.+.++..+ ||+|..+.+- +.-.|...+++.++.++.. ++.. +.+|+
T Consensus 6 ~~~~~~l~V~nLp~---~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~ 81 (104)
T 2dhg_A 6 SGPEYSLFVGDLTP---DVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 81 (104)
T ss_dssp SSCCCCEEEECCCT---TCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred CCCCcEEEEeCCCC---CCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence 33444457888763 2345667777777 9999888762 2346677899999999874 4444 55555
No 138
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.30 E-value=40 Score=22.85 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=42.3
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEE-EEeC--------CcCEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVS-LRLG--------SVPILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~-~~~g--------~~~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
.=++||+.. .-..+.+.++..+||+|.. +.+. +.-.|...+++.++.++..++..+.+|+
T Consensus 17 ~l~V~nLp~---~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~ 85 (104)
T 1wg5_A 17 FVRLRGLPF---GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 85 (104)
T ss_dssp EEEEESCCT---TCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSC
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcE
Confidence 346788753 3356677888889998765 5542 2356777899999999987666666664
No 139
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=55.02 E-value=25 Score=24.40 Aligned_cols=59 Identities=14% Similarity=0.251 Sum_probs=40.4
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHh-cCccCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKT-HDLQFCSR 100 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~-~~~~f~~R 100 (308)
-=++||+.. .-..+.+.++..+||+|..+.+-. .-.|...+++.++.++.. ++..+.+|
T Consensus 8 ~lfV~nL~~---~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr 76 (110)
T 3s8s_A 8 EVTFARLND---NVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGN 76 (110)
T ss_dssp EEEEESCCT---TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEEECCCC---CCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 346788753 335667778888999999888631 236778899999998864 44344433
No 140
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=54.92 E-value=8.3 Score=26.70 Aligned_cols=47 Identities=9% Similarity=0.176 Sum_probs=33.8
Q ss_pred hHHHHHHHHhhCCeEEEEeCCc-CEEEecCHHHHHHHHHh--cCccCCCC
Q 021726 54 QNYFWRLSKQYGPMVSLRLGSV-PILVVSSAKMAEEVLKT--HDLQFCSR 100 (308)
Q Consensus 54 ~~~~~~~~~~YG~v~~~~~g~~-~~vvi~~pe~ikevl~~--~~~~f~~R 100 (308)
..-+.++...||+|.=-|+... -.|++++|+.+++++.. +...|.-|
T Consensus 19 t~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~~~~~y~i~ 68 (101)
T 3ctr_A 19 TSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSKYAESYRIQ 68 (101)
T ss_dssp HHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHTTCSSCCCC
T ss_pred hHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEE
Confidence 4566677788998777788775 56688999999999973 33444433
No 141
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=54.85 E-value=27 Score=25.18 Aligned_cols=58 Identities=12% Similarity=0.289 Sum_probs=40.0
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
++||+.. .-..+.+.++..+||+|..+.+-. .-.|...+++.++.++.. ++..+.+|+
T Consensus 46 ~V~nLp~---~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 113 (139)
T 1u6f_A 46 MVNYIPT---TVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKR 113 (139)
T ss_dssp EEESCST---TCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCE
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 5677653 234567788888999998887631 245677899999998874 555555554
No 142
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.68 E-value=41 Score=22.61 Aligned_cols=60 Identities=12% Similarity=0.182 Sum_probs=42.2
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
-=++||+.. .-..+.+.++..+||+|..+.+-. .-+|...+++.++.++.. ++..+.+|+
T Consensus 15 ~l~V~nLp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2dnm_A 15 TLKVDNLTY---RTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE 84 (103)
T ss_dssp EEEEESCCT---TCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 346888763 235567788888999999988742 346677899999888873 555666554
No 143
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.08 E-value=25 Score=24.41 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=41.2
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCc---------CEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSV---------PILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~---------~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
-=++||+.. .-..+.+.++..+||+|..+.+-.. -+|...+++.++.++..-...+.+|+
T Consensus 19 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 87 (116)
T 2cqd_A 19 KIFVGGLPY---HTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRK 87 (116)
T ss_dssp EEEEECCCS---SCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEE
Confidence 346788753 2355667788889999998887542 35667899999999865433444443
No 144
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=53.66 E-value=22 Score=23.88 Aligned_cols=58 Identities=14% Similarity=0.273 Sum_probs=38.4
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---cCEEEecCHHHHHHHHHh-cCccCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---VPILVVSSAKMAEEVLKT-HDLQFCSR 100 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---~~~vvi~~pe~ikevl~~-~~~~f~~R 100 (308)
=++||+.. .-..+.+.++..+||+|..+.+.. .-.|...+.+.+..++.. ++..+.+|
T Consensus 30 l~V~nlp~---~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 91 (101)
T 2la4_A 30 AYIGNIPH---FATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGR 91 (101)
T ss_dssp EEEESCCT---TCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred EEEcCCCc---ccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 35777653 234567778888999998888752 345556788988888754 44444433
No 145
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.61 E-value=25 Score=23.74 Aligned_cols=58 Identities=21% Similarity=0.355 Sum_probs=38.6
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeC---------CcCEEEecCHHHHHHHHHh-cCccCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG---------SVPILVVSSAKMAEEVLKT-HDLQFCSR 100 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g---------~~~~vvi~~pe~ikevl~~-~~~~f~~R 100 (308)
=++||+.. .-..+.+.++..+||+|..+.+- +.-.|-..+++.++.++.. ++..+.+|
T Consensus 11 l~V~nlp~---~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (104)
T 1p1t_A 11 VFVGNIPY---EATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR 78 (104)
T ss_dssp EEEESCCT---TSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS
T ss_pred EEEeCCCC---cCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 36777653 33556677888899998777753 2235667899999998853 44444444
No 146
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.13 E-value=44 Score=22.68 Aligned_cols=59 Identities=10% Similarity=0.141 Sum_probs=40.3
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCC-eEEEEeC----------CcCEEEecCHHHHHHHHHh--cC-ccCCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGP-MVSLRLG----------SVPILVVSSAKMAEEVLKT--HD-LQFCSRP 101 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~-v~~~~~g----------~~~~vvi~~pe~ikevl~~--~~-~~f~~Rp 101 (308)
=++||+.. .-..+.+.++..+||+ |..+.+- +.-.|-..+++.++.++.. ++ ..+.+|+
T Consensus 11 l~V~nLp~---~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 11 LFIGGIPK---MKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp EEEECCCT---TSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred EEEeCCCC---cCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 46888753 3355677788889998 9888864 2345667899999999864 22 3444544
No 147
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=53.01 E-value=25 Score=26.42 Aligned_cols=59 Identities=12% Similarity=0.238 Sum_probs=40.6
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeC---------CcCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG---------SVPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g---------~~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
=++||++. .-....+.++..+||+|..+.+- +.-+|...+++.++.++.. ++..+.+++
T Consensus 75 l~V~nLp~---~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 143 (165)
T 1rk8_A 75 LFVTSIHE---EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 143 (165)
T ss_dssp EEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCC---CCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 46777753 33566788888999999888764 2346667899999988864 444454443
No 148
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.89 E-value=45 Score=21.72 Aligned_cols=60 Identities=20% Similarity=0.331 Sum_probs=41.8
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC-cCEEEecCHHHHHHHHH-hcCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS-VPILVVSSAKMAEEVLK-THDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~-~~~vvi~~pe~ikevl~-~~~~~f~~Rp 101 (308)
-=++||+.. .-..+.+.++..+||+|..+.+-. .-.|-..+++.++.++. -++..+.+|+
T Consensus 10 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 10 KLFIGNLPR---EATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp EEEEESCCS---SCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 446788763 335566788888999998888643 45666789999998885 3444555554
No 149
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.62 E-value=17 Score=25.28 Aligned_cols=56 Identities=9% Similarity=0.051 Sum_probs=37.5
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHhcCccCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKTHDLQFCS 99 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~~~~~f~~ 99 (308)
++||+.. .-....+.++..+||+|..+.+-. .-+|...+++.++.++.-++..+.+
T Consensus 29 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g 93 (114)
T 2cq4_A 29 FCMQLAA---RIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLG 93 (114)
T ss_dssp EEESCCT---TCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETT
T ss_pred EEeCCCC---CCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCC
Confidence 5777653 234566778888999999988741 3456677888888888444444433
No 150
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.19 E-value=12 Score=26.00 Aligned_cols=58 Identities=10% Similarity=0.171 Sum_probs=38.8
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeC-------CcCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG-------SVPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g-------~~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
++||+.. .-..+.+.++..+||+|..+.+- +.-.|...+++.++.++.. ++..+.+|+
T Consensus 33 ~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 33 HVSNIPF---RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp EEESCCT---TCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred EEECCCC---cCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 5677652 33556778888899998888764 2345666788888888863 444444443
No 151
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=51.98 E-value=27 Score=23.71 Aligned_cols=58 Identities=12% Similarity=0.144 Sum_probs=39.3
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeC--------CcCEEEecCHHHHHHHHHh-cCccCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG--------SVPILVVSSAKMAEEVLKT-HDLQFCSR 100 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g--------~~~~vvi~~pe~ikevl~~-~~~~f~~R 100 (308)
=++||+.. .-..+.+.++..+||+|..+.+- +.-.|-..+++.++.++.. ++..+.+|
T Consensus 32 l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 98 (107)
T 3ulh_A 32 LLVSNLDF---GVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR 98 (107)
T ss_dssp EEEESCCT---TCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 46777653 33456677888899999887754 1346667799999998874 54444443
No 152
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=51.38 E-value=49 Score=25.54 Aligned_cols=58 Identities=12% Similarity=0.291 Sum_probs=39.8
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeC---------CcCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG---------SVPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g---------~~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
++||+.. .-..+.+.++..+||+|..+.+- +.-.|...+++.++.++.. ++..+.+|+
T Consensus 32 ~V~nLp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 99 (216)
T 2qfj_A 32 YVGSIYY---ELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRN 99 (216)
T ss_dssp EEECCCT---TCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CC
T ss_pred EEECCCC---CCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCee
Confidence 5677653 33566788888999999988873 2346677899999999873 444444443
No 153
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.16 E-value=13 Score=25.99 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=40.5
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
=++||+.. .-..+.+.++..+||+|..+.+-. .-+|...+++.++.++..++..+.+|+
T Consensus 30 l~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 97 (116)
T 1x4b_A 30 LFIGGLSF---ETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRV 97 (116)
T ss_dssp EEEECCTT---CCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEE
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEE
Confidence 36777653 234566778888999988877632 235666799999999876555555543
No 154
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.05 E-value=52 Score=21.94 Aligned_cols=61 Identities=13% Similarity=0.242 Sum_probs=42.2
Q ss_pred CCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 38 GLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 38 ~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
..=++||+.. .-..+.+.++..+||+|..+.+-. .-+|...+++.++.++.. ++..+.+|+
T Consensus 13 ~~l~v~nLp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 13 GKLFVGGLSF---DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp SEEEEESCCT---TCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred CEEEEECCCC---CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3456888753 335566778888999998888743 235566799999998853 555566665
No 155
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.85 E-value=23 Score=23.80 Aligned_cols=63 Identities=10% Similarity=0.252 Sum_probs=41.9
Q ss_pred CCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 36 PRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 36 P~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
|...=++||+.. .-..+.+.++..+||+|..+.+.. .-.|...+++.++.++.. ++..+.+|+
T Consensus 11 ~~~~l~V~nLp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2cqb_A 11 TKRVLYVGGLAE---EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 83 (102)
T ss_dssp CCSCEEEESCCS---SCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEeCCCC---CCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 333457888763 235667788888999998888732 234555799999988854 554555443
No 156
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=50.43 E-value=58 Score=22.28 Aligned_cols=59 Identities=19% Similarity=0.439 Sum_probs=40.7
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeC---------CcCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG---------SVPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g---------~~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
=++||+.. .-....+.++..+||+|..+.+- +.-.|...+++.++.++.. ++..+.+|+
T Consensus 29 l~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 29 LYVGSLHF---NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp EEEECCCS---SCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 36788753 33556677888899999887763 1345677899999998853 555555554
No 157
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=50.42 E-value=26 Score=23.06 Aligned_cols=58 Identities=12% Similarity=0.237 Sum_probs=37.6
Q ss_pred ccccccCCCCCCchHHHHHHHHhhC--CeEEEEeCC---------cCEEEecCHHHHHHHHH-hcCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYG--PMVSLRLGS---------VPILVVSSAKMAEEVLK-THDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG--~v~~~~~g~---------~~~vvi~~pe~ikevl~-~~~~~f~~Rp 101 (308)
++||+.. .-..+.+.++..+|| +|..+++-. .-.|...+++.++.++. -++..+.+|+
T Consensus 5 ~V~nL~~---~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 74 (90)
T 3p5t_L 5 YIGNLTW---WTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN 74 (90)
T ss_dssp EEESCCT---TCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCC
T ss_pred EEeCCCC---CCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEE
Confidence 5677653 235567778888999 887776422 23566679999988884 3455566554
No 158
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=50.37 E-value=36 Score=21.88 Aligned_cols=58 Identities=12% Similarity=0.300 Sum_probs=38.9
Q ss_pred cccccccCCCCCCchHHHHHHHHhh----C-------CeEEEEeCC---cCEEEecCHHHHHHHHHhcCccCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQY----G-------PMVSLRLGS---VPILVVSSAKMAEEVLKTHDLQFCSR 100 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~Y----G-------~v~~~~~g~---~~~vvi~~pe~ikevl~~~~~~f~~R 100 (308)
=++||+.. .-..+.+.++..+| | +|..+++.. .-.|-..+++.++.++.-++..+.+|
T Consensus 9 l~V~nLp~---~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~ 80 (87)
T 2hzc_A 9 LYVGNIPF---GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQ 80 (87)
T ss_dssp EEEESCCT---TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred EEEeCCCC---CCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHHhcCCCEECCe
Confidence 36788763 23456677777788 8 899888763 45666789999998884444444333
No 159
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.30 E-value=52 Score=21.77 Aligned_cols=59 Identities=15% Similarity=0.284 Sum_probs=38.1
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCe-EEEEeC---CcCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPM-VSLRLG---SVPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v-~~~~~g---~~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
=++||+.. .-..+.+.++..+||+| ..+..+ +.-.|...+++.++.++.. ++..+.+|+
T Consensus 22 l~V~nL~~---~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 22 VYVGNLPR---DARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp EEEECCCT---TCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred EEEeCCCC---cCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 36787653 33456777888899987 333333 2345666899999888854 555555554
No 160
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=50.12 E-value=19 Score=28.09 Aligned_cols=58 Identities=10% Similarity=0.203 Sum_probs=40.1
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeC--------CcCEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG--------SVPILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g--------~~~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
++||++. .-..+.+.++..+||+|..+.+. +.-.|...+++.++.++...+..+.+|+
T Consensus 113 ~V~nLp~---~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~ 178 (193)
T 2voo_A 113 YIKGFPT---DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD 178 (193)
T ss_dssp EEECCCT---TCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEE
T ss_pred EecCCCC---cCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 5677652 34567888888999999888753 2345667899999999865444444443
No 161
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.09 E-value=39 Score=22.51 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=41.7
Q ss_pred CcccccccCCCCCCchHHHHHHHHhh--CCeEEEEeCC-cCEEEecCHHHHHHHHH-hcCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQY--GPMVSLRLGS-VPILVVSSAKMAEEVLK-THDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~Y--G~v~~~~~g~-~~~vvi~~pe~ikevl~-~~~~~f~~Rp 101 (308)
.=++||+.. .-....+.++..+| |.|..+.+-. .-+|...+++.++.++. -++..+.+|+
T Consensus 17 ~l~V~nLp~---~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 17 ILYVRNLML---STSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp EEEEESCCT---TCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 446888753 23556778888899 8898888643 45667789999999886 3454555443
No 162
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.06 E-value=26 Score=22.60 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=35.2
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHH
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLK 91 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~ 91 (308)
.=++||++. .-..+.+.++..+||+|..+.+-. .-.|...+++.++.++.
T Consensus 7 ~l~v~nlp~---~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 7 GLYIRGLQP---GTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp EEEEESCCT---TCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 446788753 234566777778999998887532 23566789998888875
No 163
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.01 E-value=51 Score=21.54 Aligned_cols=51 Identities=20% Similarity=0.369 Sum_probs=37.4
Q ss_pred CCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHH
Q 021726 38 GLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLK 91 (308)
Q Consensus 38 ~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~ 91 (308)
..=++||++. .-..+.+.++..+||+|..+.+-. .-.|...+++.++.++.
T Consensus 17 ~~l~V~nlp~---~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 76 (94)
T 2e5h_A 17 STVYVSNLPF---SLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTR 76 (94)
T ss_dssp TSEEEESCCT---TSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCC---CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHH
Confidence 3457888763 335566788888999999888742 34667789999998885
No 164
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=49.90 E-value=46 Score=25.28 Aligned_cols=55 Identities=9% Similarity=0.133 Sum_probs=37.9
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeC-----CcCEEEecCHHHHHHHHHh-cCccCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG-----SVPILVVSSAKMAEEVLKT-HDLQFC 98 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g-----~~~~vvi~~pe~ikevl~~-~~~~f~ 98 (308)
++||+.. .-..+.+.+...+||+|-++++. +.=+|-..|.+.+++++.. ++..+.
T Consensus 50 ~VgNL~~---~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~ 110 (164)
T 1sjr_A 50 IVENLFY---PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 110 (164)
T ss_dssp EECSCCS---CCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSS
T ss_pred EEeCcCC---CCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEec
Confidence 4788753 33456677888899999888863 2346777899988888764 444443
No 165
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=49.60 E-value=31 Score=25.44 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=42.2
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeC------C---cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG------S---VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g------~---~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
.=++||+.. .-..+.+.++..+||+|..+.+- . .-+|...+++.++.++.. ++..+.+++
T Consensus 41 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 110 (156)
T 1h2v_Z 41 TLYVGNLSF---YTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRI 110 (156)
T ss_dssp EEEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 446788753 23566788888999999888872 1 236777899999999874 555555554
No 166
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=49.59 E-value=59 Score=22.12 Aligned_cols=57 Identities=9% Similarity=0.070 Sum_probs=40.6
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeC--CcCEEEecCHHHHHHHHHh-cCccCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG--SVPILVVSSAKMAEEVLKT-HDLQFCS 99 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g--~~~~vvi~~pe~ikevl~~-~~~~f~~ 99 (308)
=++||+.. .-..+.+.++..+||+|..+.+- +.-+|...+++.++.++.. ++..+.+
T Consensus 18 l~V~nLp~---~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 18 VVVSGLPP---SGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp EEEESCCS---SCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 36788763 33567778888999999888864 3566777899999998864 4444444
No 167
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.27 E-value=29 Score=22.94 Aligned_cols=58 Identities=14% Similarity=0.253 Sum_probs=39.3
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC----cCEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS----VPILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~----~~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
++||+.. .-..+.+.++..+||+|..+..-. .-.|-..+++.++.++.-++..+.+|+
T Consensus 12 ~V~nl~~---~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~ 73 (94)
T 2e5g_A 12 FVSGFPR---GVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHR 73 (94)
T ss_dssp EEECCCT---TCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEE
T ss_pred EEECCCC---CCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEE
Confidence 6788753 335567788888999988774322 234566799999999875555555544
No 168
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.25 E-value=55 Score=22.68 Aligned_cols=63 Identities=13% Similarity=0.208 Sum_probs=42.9
Q ss_pred CCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeC---CcCEEEecCHHHHHHHHHh-c--CccCCCCC
Q 021726 36 PRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG---SVPILVVSSAKMAEEVLKT-H--DLQFCSRP 101 (308)
Q Consensus 36 P~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g---~~~~vvi~~pe~ikevl~~-~--~~~f~~Rp 101 (308)
|...=++||+.. .-....+.++..+||+|..+.+- +.=.|-..+++.++.++.. + +..+.+|+
T Consensus 15 ~~~~LfV~nLp~---~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~ 83 (105)
T 1sjq_A 15 PSRVIHIRKLPI---DVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 83 (105)
T ss_dssp CCCEEEECSCCT---TSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEE
T ss_pred CCCEEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 333457888763 23456677888899999988864 3457777899999888863 2 23455555
No 169
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=49.04 E-value=29 Score=25.93 Aligned_cols=57 Identities=14% Similarity=0.283 Sum_probs=38.5
Q ss_pred ccccccCCCCCCchHHHHHHHHhhC--CeEEEEeC-----C----cCEEEecCHHHHHHHHHh-cCccCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYG--PMVSLRLG-----S----VPILVVSSAKMAEEVLKT-HDLQFCSR 100 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG--~v~~~~~g-----~----~~~vvi~~pe~ikevl~~-~~~~f~~R 100 (308)
++||+.. .-..+.+.++..+|| +|..+++- + .-+|...+++.++.++.. ++..+.+|
T Consensus 59 fVgnLp~---~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr 127 (156)
T 3n9u_C 59 YVGSFSW---WTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGE 127 (156)
T ss_dssp EEECCCT---TCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTE
T ss_pred EEeCCCC---CCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 4555432 234567788888999 89888862 1 246778899999999876 44444444
No 170
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=48.82 E-value=26 Score=23.14 Aligned_cols=59 Identities=15% Similarity=0.331 Sum_probs=40.2
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC--------cCEEEecCHHHHHHHHHh-cCccCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS--------VPILVVSSAKMAEEVLKT-HDLQFCSR 100 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~--------~~~vvi~~pe~ikevl~~-~~~~f~~R 100 (308)
-=++||++. .-..+.+.++..+||+|..+.+.. .-.|...+++.++.++.. ++..+.+|
T Consensus 18 ~l~v~nlp~---~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (95)
T 2ywk_A 18 TVFVGNLEA---RVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGR 85 (95)
T ss_dssp EEEEECCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTE
T ss_pred EEEEECCCC---CCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCC
Confidence 346787753 335567888889999998888642 235667799999988863 44444444
No 171
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=48.50 E-value=53 Score=22.54 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=41.0
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
-=++||+.. .-..+.+.++..+||+|..+.+-. .-+|...+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 17 HVFVGDLSP---EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp EEEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 346788753 335567788888999998887642 235667899999999864 444454443
No 172
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=48.26 E-value=39 Score=24.81 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=40.2
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCc---------CEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSV---------PILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~---------~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
-++||+.. .-..+.+.++..+||+|..+.+-.. -.|-..+++.+..++..++..+.+|+
T Consensus 90 l~V~nlp~---~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 157 (167)
T 2cjk_A 90 IFVGGIGP---DVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRK 157 (167)
T ss_dssp EEEEEECT---TCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSC
T ss_pred EEECCCCC---CCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeE
Confidence 35677653 2345667788889999988886432 34666799999999875555555554
No 173
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.11 E-value=59 Score=21.73 Aligned_cols=60 Identities=17% Similarity=0.226 Sum_probs=41.0
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC-------cCEEEecCHHHHHHHHH-hcCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS-------VPILVVSSAKMAEEVLK-THDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~-------~~~vvi~~pe~ikevl~-~~~~~f~~Rp 101 (308)
.=++||+.. .-..+.+.++..+||+|..+.+-. .-+|...+++.++.++. -++..+.+|+
T Consensus 17 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cqi_A 17 TLYVGNLSR---DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKE 84 (103)
T ss_dssp EEEEESCCT---TCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred EEEEeCCCc---cCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence 446888753 235567788888999998887642 34666789999998886 3444444443
No 174
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=48.11 E-value=35 Score=22.78 Aligned_cols=60 Identities=15% Similarity=0.261 Sum_probs=41.0
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
-=++||+.. .-..+.+.++..+||+|..+.+.. .-.|...+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 17 RLFVGNLPP---DITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp EEEEESCCT---TCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred EEEEeCCCC---CCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 346788753 235566788888999998888754 345556788888888754 555555554
No 175
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=48.05 E-value=20 Score=23.51 Aligned_cols=57 Identities=19% Similarity=0.344 Sum_probs=36.3
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
++||+.. .-..+.+.++..+||+|..+.+.. .-.|...+++ +++++.. ++..+.+|+
T Consensus 5 ~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~ 71 (90)
T 2ki2_A 5 YVGNLVY---SATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRT 71 (90)
T ss_dssp EEEEECT---TSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSS
T ss_pred EECCCCC---CCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeE
Confidence 4677653 234556677778899998888642 2356667888 7777754 444455554
No 176
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=47.69 E-value=33 Score=25.10 Aligned_cols=58 Identities=22% Similarity=0.254 Sum_probs=39.4
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
++||++. .-..+.+.++..+||+|..+.+-. .-.|...+++.++.++.. ++..+.+++
T Consensus 6 ~v~nlp~---~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 73 (167)
T 1fxl_A 6 IVNYLPQ---NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 73 (167)
T ss_dssp EEESCCT---TCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEcCCCC---CCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCce
Confidence 5677652 235566778888999998887632 236677899999999863 444444443
No 177
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=47.50 E-value=34 Score=24.23 Aligned_cols=57 Identities=9% Similarity=0.165 Sum_probs=39.7
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeC---CcCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG---SVPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g---~~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
=++||+ . -..+.+.++..+||+|..+.++ +.-+|...+++.++.++.. ++..+.+|+
T Consensus 42 lfVgnl-~----~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 42 LYVYGE-D----MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp EEEECS-S----CCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred EEEcCC-C----CCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 357772 2 3456778888899999888876 3455666799999888854 555565554
No 178
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=47.48 E-value=66 Score=25.40 Aligned_cols=60 Identities=12% Similarity=0.240 Sum_probs=43.0
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeC----CcCEEEecCHHHHHHHHH-hcCccCCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG----SVPILVVSSAKMAEEVLK-THDLQFCSRP 101 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g----~~~~vvi~~pe~ikevl~-~~~~~f~~Rp 101 (308)
=++||+... .-..+.+.++..+||+|..+.+- +.-.|...+++.++.++. -++..+.+|+
T Consensus 37 l~V~nLp~~--~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 101 (229)
T 2adc_A 37 LLVSNLNPE--RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 101 (229)
T ss_dssp EEEESCCTT--TCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSB
T ss_pred EEEeCCCcc--cCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 357877531 33456777888899999998875 345677889999999885 4555666665
No 179
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=47.13 E-value=53 Score=22.51 Aligned_cols=66 Identities=11% Similarity=0.168 Sum_probs=44.5
Q ss_pred CCCCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---cCEEEecCHHHHHHHHHh---cCccCCCCC
Q 021726 34 PGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---VPILVVSSAKMAEEVLKT---HDLQFCSRP 101 (308)
Q Consensus 34 PGP~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---~~~vvi~~pe~ikevl~~---~~~~f~~Rp 101 (308)
+.|...=++||+.. ..-....+.++..+||.|..+++-. .=.|-..+.+.+..++.. ....+.+|+
T Consensus 12 ~~p~~~l~V~nLp~--~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 12 VETRRVVHIMDFQR--GKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCCEEEEESCCC--SSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCEEEEeCCCC--CcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 34444557898763 1335567778889999999999764 347777899999888753 122355555
No 180
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=46.99 E-value=47 Score=22.87 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=40.4
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
.=++||+.. .-..+.+.++..+||+|..+.+-. .-+|...+++.++.++.. ++..+.+|+
T Consensus 27 ~l~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 96 (115)
T 2cpz_A 27 NLFIYHLPQ---EFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKR 96 (115)
T ss_dssp CEEEESCCS---SCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 346788763 234567788888999988777532 235667799999998854 444455443
No 181
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=46.87 E-value=48 Score=21.87 Aligned_cols=57 Identities=14% Similarity=0.381 Sum_probs=38.7
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeC---------CcCEEEecCHHHHHHHHHh-cCccCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG---------SVPILVVSSAKMAEEVLKT-HDLQFCSR 100 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g---------~~~~vvi~~pe~ikevl~~-~~~~f~~R 100 (308)
++||+.. .-..+.+.++..+||+|..+.+- +.-.|-..+++.++.++.. ++..+.+|
T Consensus 6 ~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 72 (96)
T 2x1f_A 6 YLGSIPY---DQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSR 72 (96)
T ss_dssp EEESCCT---TCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEECCCC---CCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 5777653 23456677888899999998873 2245667899999988853 44444443
No 182
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=46.74 E-value=67 Score=22.93 Aligned_cols=62 Identities=15% Similarity=0.287 Sum_probs=40.0
Q ss_pred cccccccCCCCCC-chHHHHHHHHhhCCeEEEEeC------CcCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 40 PFIGNLHQFDYSN-PQNYFWRLSKQYGPMVSLRLG------SVPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 40 P~lGn~~~~~~~~-~~~~~~~~~~~YG~v~~~~~g------~~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
=++||+..-.... .-..+.++..+||+|..+.+. +.=+|...+++.+..++.. ++..+.+|+
T Consensus 32 LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 32 VLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred EEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 4678876321111 122456778899999888863 2456777899999888854 555566665
No 183
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=46.68 E-value=44 Score=23.43 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=39.6
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC--------cCEEEecCHHHHHHHHH-hcCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS--------VPILVVSSAKMAEEVLK-THDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~--------~~~vvi~~pe~ikevl~-~~~~~f~~Rp 101 (308)
++||+.. .-..+.+.++..+||+|..+.+-. .-.|...+.+.++.++. -++..+.+|+
T Consensus 39 ~V~nlp~---~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 105 (124)
T 2kt5_A 39 LVSNLDF---GVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 105 (124)
T ss_dssp EEESCCS---SCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 5777652 234566778888999998887632 34566789999998886 3555555554
No 184
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=46.43 E-value=71 Score=22.92 Aligned_cols=59 Identities=14% Similarity=0.223 Sum_probs=41.8
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
=++||+.. .-..+.+.++..+||+|..+.+-. .-.|...+++.++.++.. ++..+.+|+
T Consensus 50 l~V~nLp~---~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 118 (135)
T 2lea_A 50 LKVDNLTY---RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 118 (135)
T ss_dssp EEEECCCS---SCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 35777653 345677788889999998888743 346777899999999864 455555554
No 185
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=46.27 E-value=61 Score=21.38 Aligned_cols=58 Identities=10% Similarity=0.146 Sum_probs=40.6
Q ss_pred CCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---cCEEEecCHHHHHHHHHh-cCccCC
Q 021726 38 GLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---VPILVVSSAKMAEEVLKT-HDLQFC 98 (308)
Q Consensus 38 ~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---~~~vvi~~pe~ikevl~~-~~~~f~ 98 (308)
..=++||+.. .-..+.+.++..+||+|..+.+-. .-.|...+++.++.++.. ++..+.
T Consensus 18 ~~l~V~nlp~---~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 18 TRLWVGGLGP---NTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp SCEEEECCCS---SCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 3446888763 234566778888999999988654 345666799999988863 454554
No 186
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=45.98 E-value=25 Score=24.25 Aligned_cols=61 Identities=11% Similarity=0.150 Sum_probs=41.4
Q ss_pred CCcccccccCCCCCCchHHHH---HHHHhhCCeEEEEeCC------------cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 38 GLPFIGNLHQFDYSNPQNYFW---RLSKQYGPMVSLRLGS------------VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 38 ~~P~lGn~~~~~~~~~~~~~~---~~~~~YG~v~~~~~g~------------~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
..=++||+..- -..+.+. ++..+||+|..+.+-. .-.|...+++.++.++.. ++..+.+|+
T Consensus 16 ~~l~V~nLp~~---~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 16 NLVFVVGLSQR---LADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp SCEEEEEECTT---TCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEEEECCCCC---CCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 34478887642 2334455 7778999998888642 335666799999999876 666666654
No 187
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=45.90 E-value=35 Score=22.99 Aligned_cols=67 Identities=21% Similarity=0.232 Sum_probs=43.3
Q ss_pred CCCCCCCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 31 ALPPGPRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 31 ~lpPGP~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
..++.|...=++||+.. .-..+.+.++..+|| |..+.+-. .-.|...+++.++.++.-++..+.+|+
T Consensus 9 ~~~~~~~~~l~V~nLp~---~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 84 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPF---NTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRS 84 (103)
T ss_dssp CCCSSSCEEEEEESCCT---TCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred CCCCCCCeEEEEeCCCC---CCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeE
Confidence 34444444557888753 335566777888897 88877632 235677899999999854555555544
No 188
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=45.87 E-value=35 Score=22.96 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=38.1
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC----------cCEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS----------VPILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~----------~~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
++||+..- -..+.+.++..+|| |..+.+.. .-.|...+.+.++.++.-++..+.+|+
T Consensus 23 ~V~nLp~~---~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~ 89 (100)
T 2j76_E 23 FLGNLPYD---VTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRR 89 (100)
T ss_dssp EESCCSSC---CSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeE
Confidence 57776532 23445667778899 99888743 235667899999998854555555554
No 189
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=45.33 E-value=30 Score=26.29 Aligned_cols=59 Identities=12% Similarity=0.196 Sum_probs=41.2
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHhcCccCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKTHDLQFCSR 100 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~~~~~f~~R 100 (308)
-=++||++. .-..+.+.++..+||+|..+.+-. .-.|...+++.++.++..++..+.+|
T Consensus 15 ~l~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~ 82 (196)
T 1l3k_A 15 KLFIGGLSF---ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGR 82 (196)
T ss_dssp EEEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCE
Confidence 447888763 335667788889999998877531 34677789999999997654444443
No 190
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.85 E-value=73 Score=21.56 Aligned_cols=59 Identities=14% Similarity=0.232 Sum_probs=40.5
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC------cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS------VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~------~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
=++||+.. .-..+.+.++..+||+|..+.+-. .-+|...+++.++.++.. ++..+.+|+
T Consensus 25 l~V~nLp~---~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 90 (109)
T 1x4a_A 25 IYVGNLPP---DIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR 90 (109)
T ss_dssp EEEESCCT---TCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 36787753 335667888889999998877643 236777899999998843 444454443
No 191
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=43.80 E-value=33 Score=25.09 Aligned_cols=58 Identities=14% Similarity=0.253 Sum_probs=39.1
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeC--------CcCEEEecCHHHHHHHHH-hcCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG--------SVPILVVSSAKMAEEVLK-THDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g--------~~~~vvi~~pe~ikevl~-~~~~~f~~Rp 101 (308)
++||++. .-..+.+.++.++||+|..+++- +.-.|...+++.++.++. -++..+.+++
T Consensus 4 ~V~nlp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (166)
T 3md3_A 4 YVGNLDK---AITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNI 70 (166)
T ss_dssp EEEEEET---TCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EECCCCC---cCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCe
Confidence 4677653 23456778888999999888873 224666779999999883 3444444443
No 192
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=43.79 E-value=55 Score=29.16 Aligned_cols=60 Identities=12% Similarity=0.223 Sum_probs=41.3
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeC---------CcCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG---------SVPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g---------~~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
.-++|||.. .-....+.++..+||+|..+.+- +.-+|...+++.+..++.. ++..+.+++
T Consensus 104 ~lfV~nL~~---~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~ 173 (437)
T 3pgw_S 104 TLFVARVNY---DTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRR 173 (437)
T ss_pred EEEEeCCCC---CCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEE
Confidence 447888753 23456677788899999888863 2346677799999988854 555555544
No 193
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.77 E-value=58 Score=22.17 Aligned_cols=61 Identities=11% Similarity=0.164 Sum_probs=41.1
Q ss_pred CCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---cCEEEecCHHHHHHHHHh---cCccCCCCC
Q 021726 38 GLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---VPILVVSSAKMAEEVLKT---HDLQFCSRP 101 (308)
Q Consensus 38 ~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---~~~vvi~~pe~ikevl~~---~~~~f~~Rp 101 (308)
..=++||+.. .-....+.++..+||.|..+.+.. .=.|-..+.+.++.++.. ++..+.+|+
T Consensus 16 ~~l~V~nLp~---~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 16 RVLHIRKLPG---EVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp SEEEEESCCT---TCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 3457888763 234566778888999998888643 456777899988888753 233344554
No 194
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.39 E-value=75 Score=21.60 Aligned_cols=48 Identities=23% Similarity=0.489 Sum_probs=35.5
Q ss_pred chHHHHHHHHhhCCeEEEEeCC----cCEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 53 PQNYFWRLSKQYGPMVSLRLGS----VPILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 53 ~~~~~~~~~~~YG~v~~~~~g~----~~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
..+.+.++..+||+|..+.+.+ .=+|...+++.+..++.. ...+.+||
T Consensus 30 te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~ 81 (100)
T 2d9o_A 30 SKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN-EVGLVDNP 81 (100)
T ss_dssp CHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT-CCBCSSSB
T ss_pred CHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh-cCCCCCCe
Confidence 3577888889999999988742 346777899999998865 33455555
No 195
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=42.90 E-value=42 Score=24.34 Aligned_cols=64 Identities=9% Similarity=0.138 Sum_probs=39.3
Q ss_pred CCCCCCCC--cccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCc-----CEEEecCHHHHHHHHHh-cCccCC
Q 021726 32 LPPGPRGL--PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSV-----PILVVSSAKMAEEVLKT-HDLQFC 98 (308)
Q Consensus 32 lpPGP~~~--P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~-----~~vvi~~pe~ikevl~~-~~~~f~ 98 (308)
++++|... =++||+.. .-..+.+.+...+||+|-++.+... -+|...+++.++.++.. ++..+.
T Consensus 21 ~~~~ps~VL~I~V~NL~~---~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~ 92 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFY---PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 92 (130)
T ss_dssp ----CCSEEEEEEESCCS---CCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEE
T ss_pred ccCCCCceEEEEECCCCC---CCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeec
Confidence 44555443 34888753 2345567788889999988886432 46777888888777643 343443
No 196
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=42.79 E-value=24 Score=24.54 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=34.7
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHh
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKT 92 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~ 92 (308)
++||+.. .-..+.+.++..+||+|..+.+-. .-+|...+++.++.++..
T Consensus 44 ~V~nlp~---~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 101 (118)
T 2khc_A 44 FIYHLPQ---EFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 101 (118)
T ss_dssp EEECSCT---TCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 5666653 234567788888999998888742 235666799999888864
No 197
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=41.79 E-value=79 Score=21.36 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=37.0
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHh
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKT 92 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~ 92 (308)
.=++||+.. .-..+.+.++..+||+|..+.+-. .-.|...+++.++.++..
T Consensus 17 ~l~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 76 (111)
T 1x4h_A 17 TVFIRNLSF---DSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 76 (111)
T ss_dssp CEEEESCCT---TCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHH
T ss_pred EEEEECCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHH
Confidence 457888763 235566778888999999888741 235666799999998864
No 198
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.73 E-value=63 Score=22.90 Aligned_cols=62 Identities=11% Similarity=0.158 Sum_probs=41.6
Q ss_pred CCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeC---CcCEEEecCHHHHHHHHHh---cCccCCCCCC
Q 021726 38 GLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG---SVPILVVSSAKMAEEVLKT---HDLQFCSRPA 102 (308)
Q Consensus 38 ~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g---~~~~vvi~~pe~ikevl~~---~~~~f~~Rp~ 102 (308)
..=++||+.. .-....+.++..+||.|..+.+. +.=.|-..+.+.++.++.. .+..+.+|+-
T Consensus 32 ~~LfVgNLp~---~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 32 RVIHIRKLPI---DVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SEEEEESCCT---TCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 3457888763 23456677888899999888764 3456667789888888752 2234555653
No 199
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.40 E-value=58 Score=22.30 Aligned_cols=61 Identities=11% Similarity=0.266 Sum_probs=39.7
Q ss_pred CCcccccccCCCCCCchHHHHHHHHhhCCe----EEEEe--C---CcCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 38 GLPFIGNLHQFDYSNPQNYFWRLSKQYGPM----VSLRL--G---SVPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 38 ~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v----~~~~~--g---~~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
..=++||+.. .-..+.+.++..+||+| ..+.. | +.-+|...+++.++.++.. ++..+.+++
T Consensus 26 ~~l~V~nLp~---~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 26 KVLYLKNLSP---RVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp SEEEEECCCT---TCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 3446888753 33456677788889987 44442 2 2345667899999999864 555565555
No 200
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=41.17 E-value=34 Score=28.16 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=43.9
Q ss_pred CCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeC-------CcCEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 38 GLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG-------SVPILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 38 ~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g-------~~~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
.-=++||++. .-....+.++..+||+|..+.+- +.-.|...+++.++.++..++..+.+|+
T Consensus 42 ~~l~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 109 (292)
T 2ghp_A 42 TTVLVKNLPK---SYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNE 109 (292)
T ss_dssp CEEEEEEECT---TCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEE
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcE
Confidence 3457888763 33566788888999999888752 2456777899999999966666666654
No 201
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=40.65 E-value=55 Score=22.30 Aligned_cols=59 Identities=15% Similarity=0.238 Sum_probs=39.9
Q ss_pred cccccccCCCCC-CchHHHHHHHHhhCCeEEEEeCC-cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 40 PFIGNLHQFDYS-NPQNYFWRLSKQYGPMVSLRLGS-VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 40 P~lGn~~~~~~~-~~~~~~~~~~~~YG~v~~~~~g~-~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
=++||+.. . -..+.+.++..+||+|..+.+.. .-+|...+++.++.++.. ++..+.+++
T Consensus 30 l~V~nl~~---~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 91 (110)
T 1wf1_A 30 VFIGNLNT---ALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQT 91 (110)
T ss_dssp EEECSCCC---SSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCc---ccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 36787653 2 35667788889999998888733 345556788888888854 454555543
No 202
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=40.28 E-value=39 Score=25.67 Aligned_cols=58 Identities=9% Similarity=0.247 Sum_probs=39.7
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCc---------CEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSV---------PILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~---------~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
++||+.. .-..+.+.++..+||+|..+.+... -.|-..+++.+..++..++..+.+|+
T Consensus 108 ~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~ 174 (196)
T 1l3k_A 108 FVGGIKE---DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN 174 (196)
T ss_dssp EEECCTT---TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEE
T ss_pred EEeCCCC---CCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEE
Confidence 5677643 2345677788889999988776421 35667799999999976555555443
No 203
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=39.58 E-value=99 Score=21.85 Aligned_cols=49 Identities=10% Similarity=0.247 Sum_probs=35.0
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHh
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKT 92 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~ 92 (308)
++||+.. .-..+.+.++..+||+|..+.+.. .-.|...+++.++.++..
T Consensus 67 ~v~nlp~---~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 67 YVGGLAE---EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 124 (140)
T ss_dssp EEECCCT---TCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH
T ss_pred EEEeCCC---CCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 4666542 234567788889999999988732 235667899999998853
No 204
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=39.55 E-value=63 Score=24.57 Aligned_cols=59 Identities=12% Similarity=0.257 Sum_probs=41.8
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeC----CcCEEEecCHHHHHHHHH-hcCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG----SVPILVVSSAKMAEEVLK-THDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g----~~~~vvi~~pe~ikevl~-~~~~~f~~Rp 101 (308)
++||+... .-..+.+.++..+||+|..+.+- +.-.|...+++.++.++. -++..+.+|+
T Consensus 7 ~v~nlp~~--~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (198)
T 1qm9_A 7 LVSNLNPE--RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 70 (198)
T ss_dssp EEECCCSS--SCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCC
T ss_pred EEeCCCcc--cCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeE
Confidence 46776531 33456778888899999988875 345777889999998886 4555666665
No 205
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.16 E-value=84 Score=20.92 Aligned_cols=58 Identities=7% Similarity=0.074 Sum_probs=39.7
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHhcCccCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKTHDLQFCSR 100 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~~~~~f~~R 100 (308)
-=++||+.. .-....+.++..+||+|..+.+-. .-+|...+++.++.++.. ...+.+|
T Consensus 17 ~l~v~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~ 83 (103)
T 2cqg_A 17 DLIVLGLPW---KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGR 83 (103)
T ss_dssp CEEEESCCS---SCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTE
T ss_pred EEEEEcCCC---cCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCe
Confidence 346888653 335566788889999998887632 245667899999999873 4444444
No 206
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=38.02 E-value=15 Score=24.91 Aligned_cols=58 Identities=9% Similarity=0.271 Sum_probs=39.0
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC--------cCEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS--------VPILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~--------~~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
=++||+.. .-..+.+.++..+||+|..+.+-. .-.|...+++.++.++. ++..+.+++
T Consensus 12 l~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~ 77 (102)
T 2xs2_A 12 VFVGGIDV---RMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKK 77 (102)
T ss_dssp EEEECCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEE
T ss_pred EEEeCCCC---CCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEE
Confidence 36787753 234566778889999998887632 33566678888888886 544454443
No 207
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=37.99 E-value=33 Score=23.64 Aligned_cols=38 Identities=8% Similarity=0.222 Sum_probs=30.3
Q ss_pred hHHHHHHHHhhCCeEEEEeCCc-CEEEecCHHHHHHHHH
Q 021726 54 QNYFWRLSKQYGPMVSLRLGSV-PILVVSSAKMAEEVLK 91 (308)
Q Consensus 54 ~~~~~~~~~~YG~v~~~~~g~~-~~vvi~~pe~ikevl~ 91 (308)
..-+.++...||.|.=-|+... -.|++++|+.+++++.
T Consensus 29 t~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 29 TSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp HHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHH
T ss_pred hHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHH
Confidence 4566777789998777777775 5667899999999996
No 208
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=44.09 E-value=6.8 Score=21.80 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 021726 5 MILLLVPIFLIPIILHVQRY 24 (308)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (308)
++.|.++.+++.||+++.++
T Consensus 14 vlal~vi~iisLIiLi~~w~ 33 (39)
T 2l6w_A 14 ILALVVLTIISLIILIMLWQ 33 (39)
Confidence 45566666666776666543
No 209
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=37.61 E-value=65 Score=23.50 Aligned_cols=58 Identities=14% Similarity=0.252 Sum_probs=39.5
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHH-hcCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLK-THDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~-~~~~~f~~Rp 101 (308)
++||++. .-..+.+.++..+||+|..+.+-. .-.|...+++.++.++. -++..+.+|+
T Consensus 7 ~v~nlp~---~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 74 (168)
T 1b7f_A 7 IVNYLPQ---DMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKR 74 (168)
T ss_dssp EEECCCT---TCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcE
Confidence 5677653 334566888889999998888642 34566789999999885 3444444443
No 210
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.49 E-value=42 Score=23.01 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=39.5
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeE--------EEEeCC---------cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMV--------SLRLGS---------VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~--------~~~~g~---------~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
=++||+.. .-..+.+.++..+||+|. .+.+-. .-+|...+++.++.++.. ++..+.+|+
T Consensus 18 l~V~nLp~---~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (113)
T 2cpe_A 18 IYVQGLND---SVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSK 94 (113)
T ss_dssp EEEECCCT---TCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEcCCCC---CCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCE
Confidence 36788763 234567788888999986 344321 236667899999999874 555565554
No 211
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=36.35 E-value=44 Score=24.43 Aligned_cols=58 Identities=9% Similarity=0.081 Sum_probs=41.4
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeC--------CcCEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG--------SVPILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g--------~~~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
=++||+.. .-..+.+.++..+|| +..+.+- +.-.|...+++.++.++..+...+.+|+
T Consensus 49 lfV~nLp~---~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~ 114 (139)
T 2hgn_A 49 VHMRGLPY---KATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRY 114 (139)
T ss_dssp EECCSCCT---TCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCC
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEE
Confidence 36777653 345677888888999 5577764 2457778899999999866666666665
No 212
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=36.03 E-value=96 Score=20.70 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=36.2
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHH
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLK 91 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~ 91 (308)
-=++||+.. .-..+.+.++..+||+|..+.+-. .-.|...+++.++.++.
T Consensus 15 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 73 (106)
T 2dgp_A 15 KLFIGQIPR---NLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 73 (106)
T ss_dssp EEEEESCCT---TCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 346788753 335567788888999998888643 23566679999988885
No 213
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.02 E-value=49 Score=22.16 Aligned_cols=59 Identities=10% Similarity=0.178 Sum_probs=39.8
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHh-cCccCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKT-HDLQFCSR 100 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~-~~~~f~~R 100 (308)
.=++||+.. .-..+.+.++..+||+|..+.+-. .-+|...+++.++.++.. ++..+.++
T Consensus 17 ~l~V~nlp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (103)
T 2cq0_A 17 TIRVTNLSE---DTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL 85 (103)
T ss_dssp EEEEESCCT---TCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 346888753 234566777788999998888642 235667899999998863 44444444
No 214
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=34.73 E-value=1.1e+02 Score=23.24 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=35.1
Q ss_pred chHHHHHHHHhhCCeEEEEeC--------CcCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 53 PQNYFWRLSKQYGPMVSLRLG--------SVPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 53 ~~~~~~~~~~~YG~v~~~~~g--------~~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
..+.+.++..+||+|..+.+- +.-+|...+++.++.++.. ++..+.+++
T Consensus 101 te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~ 158 (177)
T 2f3j_A 101 SDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 158 (177)
T ss_dssp CHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSB
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 456778888899999888873 2346777899999988863 444555554
No 215
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=34.63 E-value=1e+02 Score=20.53 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=39.7
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC--------cCEEEecCHHHHHHHHHh-cCccCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS--------VPILVVSSAKMAEEVLKT-HDLQFCS 99 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~--------~~~vvi~~pe~ikevl~~-~~~~f~~ 99 (308)
.=++||+.. .-..+.+.++..+||+|..+.+-. .-.|...+++.++.++.. ++..+.+
T Consensus 17 ~l~v~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 17 KLFVGMLNK---QQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp EEEEESCCT---TCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 346888753 235566788888999998887642 345667899999988863 4444444
No 216
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=34.49 E-value=74 Score=21.72 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=31.7
Q ss_pred HHHHHHHHhhCCeEEEEeCC-----------cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 55 NYFWRLSKQYGPMVSLRLGS-----------VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 55 ~~~~~~~~~YG~v~~~~~g~-----------~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
+.+.+...+||+|..+++.. .=.|--.+++.|+.++.. ++..|.+|+
T Consensus 30 ~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~ 88 (105)
T 3v4m_A 30 EDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRV 88 (105)
T ss_dssp HHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred HHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 45566677999999999742 124566789888877743 555565554
No 217
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=34.41 E-value=45 Score=23.43 Aligned_cols=69 Identities=10% Similarity=0.085 Sum_probs=41.7
Q ss_pred CCCCCCCcccccccCCCC-CCc------hHHHHHHHHhhCCeEEEEeCC-----cCEEEecCHHHHHHHHHh-cCccCCC
Q 021726 33 PPGPRGLPFIGNLHQFDY-SNP------QNYFWRLSKQYGPMVSLRLGS-----VPILVVSSAKMAEEVLKT-HDLQFCS 99 (308)
Q Consensus 33 pPGP~~~P~lGn~~~~~~-~~~------~~~~~~~~~~YG~v~~~~~g~-----~~~vvi~~pe~ikevl~~-~~~~f~~ 99 (308)
||-|...=.|-|+..... .++ .+.+.+...+||.|..+.+-. .-.|-..+++.++.++.. ++..|.+
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 556665667777764311 111 234455567999999888742 335556788888777643 5555555
Q ss_pred CC
Q 021726 100 RP 101 (308)
Q Consensus 100 Rp 101 (308)
|+
T Consensus 83 R~ 84 (114)
T 3s6e_A 83 KM 84 (114)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 218
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=34.00 E-value=75 Score=22.21 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=43.0
Q ss_pred CCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---cCEEEecCHHHHHHHHHh---cCccCCCCCC
Q 021726 36 PRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---VPILVVSSAKMAEEVLKT---HDLQFCSRPA 102 (308)
Q Consensus 36 P~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---~~~vvi~~pe~ikevl~~---~~~~f~~Rp~ 102 (308)
|...=++||+..- +-....+.++..+||+|..+++.. .=.|-..+.+.++.++.. +...+.+|+.
T Consensus 24 p~~~l~V~NLp~~--~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 24 LGRVIHLSNLPHS--GYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp CCCEEEEESCCCS--SCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred CCCEEEEeCCCCc--cCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3334578887631 134556777888999999999763 346667799988888763 2334566653
No 219
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=33.47 E-value=1.1e+02 Score=20.78 Aligned_cols=53 Identities=9% Similarity=0.102 Sum_probs=38.2
Q ss_pred CCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeC---CcCEEEecCHHHHHHHHH
Q 021726 36 PRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG---SVPILVVSSAKMAEEVLK 91 (308)
Q Consensus 36 P~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g---~~~~vvi~~pe~ikevl~ 91 (308)
|...=++||+.. .-....+.++..+||+|..+.+. +.=.|-..+.+.++.++.
T Consensus 20 ps~~l~V~NLp~---~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~ 75 (100)
T 3r27_A 20 ASPVVHIRGLID---GVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVN 75 (100)
T ss_dssp CCSEEEEESCCT---TCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CCcEEEEeCCCC---CCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 334557898763 23456677888899999888864 346677779999888875
No 220
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.33 E-value=45 Score=21.57 Aligned_cols=47 Identities=13% Similarity=0.342 Sum_probs=34.4
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeC----CcCEEEecCHHHHHHHH
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG----SVPILVVSSAKMAEEVL 90 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g----~~~~vvi~~pe~ikevl 90 (308)
++||+.. .-..+.+.++..+||+|..+.+- +.-.|...+++.++.+.
T Consensus 9 ~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~ 59 (88)
T 1wf0_A 9 FVGRCTG---DMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLC 59 (88)
T ss_dssp EEESCCS---SSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTT
T ss_pred EEeCCCC---CCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHh
Confidence 6788753 23456677888899999888874 34677788999997653
No 221
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=32.29 E-value=1.1e+02 Score=23.48 Aligned_cols=58 Identities=10% Similarity=0.229 Sum_probs=39.8
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCc---------CEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSV---------PILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~---------~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
+++|+.. .-..+.+.++..+||+|..+.+... =.|-..+++.+..++.. ++..+.+|+
T Consensus 129 ~v~nlp~---~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 196 (216)
T 2qfj_A 129 YVASVHQ---DLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 196 (216)
T ss_dssp EEECCCT---TCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSB
T ss_pred EEeCCCC---cCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcE
Confidence 5666542 2346677888889999988886432 25667899999988874 555666665
No 222
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.83 E-value=79 Score=22.44 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=38.1
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCe----EEEEe-----C---CcCEEEecCHHHHHHHHHhcCccCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPM----VSLRL-----G---SVPILVVSSAKMAEEVLKTHDLQFCSR 100 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v----~~~~~-----g---~~~~vvi~~pe~ikevl~~~~~~f~~R 100 (308)
.=++||++. .-..+.+.++..+||+| -.+++ | +.-.|...+++.++.++.+++..+.+|
T Consensus 25 ~v~V~nLp~---~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR 95 (123)
T 2dha_A 25 IVRMRGLPF---TATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 95 (123)
T ss_dssp EEEECSCCT---TCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSC
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCe
Confidence 446788753 34567788888899975 22332 2 134677789999999997655444444
No 223
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.60 E-value=1.1e+02 Score=19.95 Aligned_cols=60 Identities=20% Similarity=0.113 Sum_probs=40.5
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEE-EeCCc-----CEEEecCHHHHHHHHH-hcCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSL-RLGSV-----PILVVSSAKMAEEVLK-THDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~-~~g~~-----~~vvi~~pe~ikevl~-~~~~~f~~Rp 101 (308)
-=++||++. .-..+.+.++..+||+|..+ .+-.. -.|...+++.++.++. -++..+.+|+
T Consensus 17 ~l~V~nlp~---~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 83 (96)
T 2e44_A 17 KLQIRNIPP---HLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFT 83 (96)
T ss_dssp CEEEEEECS---SSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred EEEEEcCCC---CCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 347888863 33456677888899999888 34322 3566789999988886 3455555554
No 224
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.44 E-value=1.2e+02 Score=20.49 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=41.1
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC--------cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS--------VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~--------~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
.=++||+.. .-..+.+.++..+||+|..+.+-. .-+|...+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~---~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (114)
T 2do0_A 17 TVFVANLDY---KVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRP 85 (114)
T ss_dssp CEEEESCCT---TCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 446788763 335667788888999998777532 345677899999988863 555555544
No 225
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.22 E-value=55 Score=21.49 Aligned_cols=60 Identities=17% Similarity=0.386 Sum_probs=39.5
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEE-EeCC---------cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSL-RLGS---------VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~-~~g~---------~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
.=++||++. .-..+.+.++..+||+|..+ ++-. .-.|...+++.++.++.. ++..+.+|+
T Consensus 7 ~l~V~nLp~---~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (96)
T 1x5t_A 7 GIFIGNLDP---EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 77 (96)
T ss_dssp EEEEECCCT---TCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 336788753 23456778888899998666 5432 335667899999999873 444454444
No 226
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=31.13 E-value=1.2e+02 Score=21.96 Aligned_cols=56 Identities=13% Similarity=0.192 Sum_probs=37.3
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCc---------CEEEecCHHHHHHHHHh-cCccCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSV---------PILVVSSAKMAEEVLKT-HDLQFC 98 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~---------~~vvi~~pe~ikevl~~-~~~~f~ 98 (308)
-+++|+.. .-..+.+.++..+||+|..+.+... -.|-..+++.+..++.. ++..+.
T Consensus 92 l~v~nl~~---~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 157 (168)
T 1b7f_A 92 LYVTNLPR---TITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE 157 (168)
T ss_dssp EEEESCCT---TCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred EEEeCCCC---CCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec
Confidence 35676652 3355677888889999988776432 25666899999988863 444443
No 227
>2lif_A Core protein P21; signal peptide, E1 envelope protein, transmemb membrane protein, viral protein; NMR {Hepatitis c virus jfh-1}
Probab=37.26 E-value=10 Score=19.28 Aligned_cols=14 Identities=21% Similarity=0.515 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHh
Q 021726 9 LVPIFLIPIILHVQ 22 (308)
Q Consensus 9 ~~~~~~~~~~~~~~ 22 (308)
.++||++++.+|+.
T Consensus 5 sfsiFlLaLlscLt 18 (27)
T 2lif_A 5 PFSIFLLALLSCIT 18 (27)
Confidence 46788888877763
No 228
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=30.83 E-value=93 Score=24.13 Aligned_cols=54 Identities=22% Similarity=0.399 Sum_probs=38.0
Q ss_pred CCCCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---------cCEEEecCHHHHHHHHHh
Q 021726 36 PRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---------VPILVVSSAKMAEEVLKT 92 (308)
Q Consensus 36 P~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---------~~~vvi~~pe~ikevl~~ 92 (308)
|..-=++||+.. .-..+.+.++..+||+|..+++-. .-.|...+++.++.++..
T Consensus 14 p~~tlfVgnLp~---~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 14 PMASLYVGDLHP---DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp -CCEEEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCC---CCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHH
Confidence 333347888753 335667788889999998887521 246777899999988864
No 229
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.67 E-value=44 Score=23.09 Aligned_cols=62 Identities=11% Similarity=0.092 Sum_probs=39.6
Q ss_pred CCCCcccccccCCCCCCchHHHHHHHHhhCCe-EEEEe-----C---CcCEEEecCHHHHHHHHHhcCccCCCC
Q 021726 36 PRGLPFIGNLHQFDYSNPQNYFWRLSKQYGPM-VSLRL-----G---SVPILVVSSAKMAEEVLKTHDLQFCSR 100 (308)
Q Consensus 36 P~~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v-~~~~~-----g---~~~~vvi~~pe~ikevl~~~~~~f~~R 100 (308)
+...=++||+.. .-..+.+.++..+||.| ..+.+ | +.-.|...+++.++.++..++..+.+|
T Consensus 14 ~~~~l~V~nLp~---~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr 84 (114)
T 2cpy_A 14 AKVCAHITNIPF---SITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGR 84 (114)
T ss_dssp CCCEEEEESCCT---TSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTE
T ss_pred CccEEEEeCcCC---cCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCe
Confidence 333446888753 33556677888899998 33443 2 245677789999999986654444333
No 230
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=30.10 E-value=92 Score=21.16 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=27.9
Q ss_pred HhhCCeEEEEeCC--------cCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 62 KQYGPMVSLRLGS--------VPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 62 ~~YG~v~~~~~g~--------~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
.+||+|..+.+.. .-.|.-.+++.++.+... ++..|.+|+
T Consensus 49 ~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 49 EKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp HHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred ccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 8999999999753 234556788888877753 555565554
No 231
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.00 E-value=56 Score=22.10 Aligned_cols=59 Identities=10% Similarity=0.115 Sum_probs=40.1
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC--------cCEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS--------VPILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~--------~~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
.=++||++. .-..+.+.++..+||.+ .+.+-. .-.|...+++.++.++..+...+.+|+
T Consensus 17 ~l~V~nLp~---~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (102)
T 1wez_A 17 CVHMRGLPY---RATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRY 83 (102)
T ss_dssp EEEEESCCT---TCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSC
T ss_pred EEEEeCCCC---CCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcE
Confidence 346788753 33556777888889965 666521 245667899999999976666666675
No 232
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.95 E-value=1.3e+02 Score=20.39 Aligned_cols=62 Identities=10% Similarity=0.133 Sum_probs=41.7
Q ss_pred CCcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---cCEEEecCHHHHHHHHHh---cCccCCCCCC
Q 021726 38 GLPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---VPILVVSSAKMAEEVLKT---HDLQFCSRPA 102 (308)
Q Consensus 38 ~~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---~~~vvi~~pe~ikevl~~---~~~~f~~Rp~ 102 (308)
..=++||+.. .-....+.++..+||+|..+.+-. .=.|-..+.+.++.++.. +...+.+|+.
T Consensus 16 ~~l~V~nLp~---~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 16 PVVHVRGLCE---SVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp SEEEEESCCS---SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3457888753 335567788889999999888642 356667799988888753 2223555653
No 233
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=29.85 E-value=94 Score=22.72 Aligned_cols=59 Identities=15% Similarity=0.273 Sum_probs=38.5
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCc---------CEEEecCHHHHHHHHHh-cCccCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSV---------PILVVSSAKMAEEVLKT-HDLQFCSR 100 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~---------~~vvi~~pe~ikevl~~-~~~~f~~R 100 (308)
.-++||++. .-..+.+.++..+||+|..+.+-.. -.|-..+++.++.++.. ++..+.+|
T Consensus 96 ~l~v~nlp~---~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 164 (172)
T 2g4b_A 96 KLFIGGLPN---YLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDK 164 (172)
T ss_dssp CEEEECCCT---TCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTE
T ss_pred EEEEEcCCC---cCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCe
Confidence 346777653 2345677788889999988876322 34556788888888864 44444443
No 234
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.11 E-value=1.6e+02 Score=20.65 Aligned_cols=54 Identities=11% Similarity=0.131 Sum_probs=38.1
Q ss_pred CCCCccc--ccccCCCCCCchHHHHHHHHhhCCeEEEEeCC---cCEEEecCHHHHHHHHHh
Q 021726 36 PRGLPFI--GNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS---VPILVVSSAKMAEEVLKT 92 (308)
Q Consensus 36 P~~~P~l--Gn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~---~~~vvi~~pe~ikevl~~ 92 (308)
|...-++ ||+.. .-..+.+.+...+||.|-.+.+.. .-.|-..+++.+++++..
T Consensus 24 pt~~L~V~Ng~L~~---~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~ 82 (114)
T 2cq2_A 24 ATQSLVVANGGLGN---GVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT 82 (114)
T ss_dssp CCSEEEEETCTGGG---TCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCC---CCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 4334577 66653 234567888888999999888753 346667799999888864
No 235
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=28.04 E-value=81 Score=25.12 Aligned_cols=57 Identities=12% Similarity=0.247 Sum_probs=38.3
Q ss_pred ccccccCCCCCCchHHHHHHHHhhC--CeEEEEeCC---------cCEEEecCHHHHHHHHHh-cCccCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYG--PMVSLRLGS---------VPILVVSSAKMAEEVLKT-HDLQFCSR 100 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG--~v~~~~~g~---------~~~vvi~~pe~ikevl~~-~~~~f~~R 100 (308)
++|||.. .-....+.++..+|| .|..+.+-. .=+|...+.+.++.++.. ++..+.+|
T Consensus 72 fVgnL~~---~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr 140 (229)
T 3q2s_C 72 YIGNLTW---WTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 140 (229)
T ss_dssp EEESCCT---TCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB
T ss_pred EEeCCCC---CCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCE
Confidence 6777653 234567778889999 898887632 236777899999988853 33344433
No 236
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=27.63 E-value=1.7e+02 Score=20.96 Aligned_cols=57 Identities=19% Similarity=0.251 Sum_probs=38.2
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCc---------CEEEecCHHHHHHHHHh-cCccCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSV---------PILVVSSAKMAEEVLKT-HDLQFCSR 100 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~---------~~vvi~~pe~ikevl~~-~~~~f~~R 100 (308)
++||+.. .-..+.+.++..+||+|..+.+... -.|-..+++.+..++.. ++..+.+|
T Consensus 92 ~v~nl~~---~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 92 YVSGLPK---TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp EEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred EECCCCC---cCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 5666642 2345678888889999988776321 25666899999888863 44455544
No 237
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=26.60 E-value=99 Score=22.05 Aligned_cols=59 Identities=15% Similarity=0.172 Sum_probs=39.9
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeE--EEEeC--------CcCEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMV--SLRLG--------SVPILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~--~~~~g--------~~~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
.=++||+.. .-..+.+.++..+| .|. .+.+. +.-.|...+++.++.++...+..+.+|+
T Consensus 44 ~lfVgnLp~---~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~ 112 (126)
T 2hgm_A 44 FVRLRGLPF---GCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 112 (126)
T ss_dssp EEEEECCCT---TCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBC
T ss_pred EEEEeCCCC---CCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEE
Confidence 346787653 34556777888889 566 66653 2346778899999999976555555554
No 238
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=26.37 E-value=1.1e+02 Score=23.70 Aligned_cols=57 Identities=18% Similarity=0.323 Sum_probs=38.6
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeCC-------cCEEEecCHHHHHHHHHh-cCccCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGS-------VPILVVSSAKMAEEVLKT-HDLQFCSR 100 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~-------~~~vvi~~pe~ikevl~~-~~~~f~~R 100 (308)
++||+.. .-..+.+.++..+||+|..+.+-. .=.|-..+++.++.++.+ ++..+.+|
T Consensus 107 ~v~nl~~---~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~ 171 (213)
T 4f02_A 107 FIKNLDK---SIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 171 (213)
T ss_dssp EEESCCT---TCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred eECCccc---ccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 5676643 335667788889999998887531 236677899999998864 44444444
No 239
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.96 E-value=77 Score=22.15 Aligned_cols=60 Identities=10% Similarity=0.079 Sum_probs=37.5
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCe---EEEEe---C---CcCEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPM---VSLRL---G---SVPILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v---~~~~~---g---~~~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
.=++||+.. .-..+.+.++..+||+| ..+.. | +.-.|...+++.++.++..++..+.+|+
T Consensus 27 ~l~V~nLp~---~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 95 (124)
T 1wel_A 27 CVYLKGLPF---EAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRF 95 (124)
T ss_dssp EEEEECCCT---TCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSC
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcE
Confidence 346788753 23456677788899975 23321 1 1346667899999998875555554443
No 240
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=25.22 E-value=77 Score=16.15 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=15.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHh
Q 021726 1 MALPMILLLVPIFLIPIILHVQ 22 (308)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (308)
|.=|+-+|+|.-|++.-+-+++
T Consensus 1 mlep~qilsi~sfilsalhf~a 22 (33)
T 2kix_A 1 MLEPFQILSISSFILSALHFIA 22 (33)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHH
Confidence 4558888888877776644444
No 241
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.27 E-value=1e+02 Score=21.03 Aligned_cols=69 Identities=14% Similarity=0.115 Sum_probs=42.2
Q ss_pred CCCCCCCcccccccCCCC--CC------chHHHHHHHHhhCCeEEEEeC-----CcCEEEecCHHHHHHHHHh-cCccCC
Q 021726 33 PPGPRGLPFIGNLHQFDY--SN------PQNYFWRLSKQYGPMVSLRLG-----SVPILVVSSAKMAEEVLKT-HDLQFC 98 (308)
Q Consensus 33 pPGP~~~P~lGn~~~~~~--~~------~~~~~~~~~~~YG~v~~~~~g-----~~~~vvi~~pe~ikevl~~-~~~~f~ 98 (308)
.|.|...-++.|+..-.. .+ ..+.+.+...+||+|..+.+- +.-.|...+++.++.++.. ++..+.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 344555667888743210 11 124667777899998887763 2345666789988888753 444555
Q ss_pred CCC
Q 021726 99 SRP 101 (308)
Q Consensus 99 ~Rp 101 (308)
+|+
T Consensus 91 gr~ 93 (112)
T 2dit_A 91 GRQ 93 (112)
T ss_dssp TEE
T ss_pred CcE
Confidence 554
No 242
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=24.26 E-value=1.1e+02 Score=20.68 Aligned_cols=59 Identities=12% Similarity=0.052 Sum_probs=38.9
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCC---eEEEEeCC--------cCEEEecCHHHHHHHHHhcCccCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGP---MVSLRLGS--------VPILVVSSAKMAEEVLKTHDLQFCSR 100 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~---v~~~~~g~--------~~~vvi~~pe~ikevl~~~~~~f~~R 100 (308)
.=++||+.. .-..+.+.++..+||. |..+.+-. .-.|...+++.++.++..++..+.+|
T Consensus 13 ~l~V~nLp~---~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr 82 (107)
T 2lmi_A 13 LIRAQGLPW---SCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQR 82 (107)
T ss_dssp EEEEECCCS---SCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSS
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCe
Confidence 346888764 2345567777788877 66666531 34677789999999997555444444
No 243
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=23.29 E-value=28 Score=22.98 Aligned_cols=60 Identities=13% Similarity=0.091 Sum_probs=37.1
Q ss_pred CcccccccCCCCCCchHHHHHHHHhhCCeEEEEe------C---CcCEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 39 LPFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRL------G---SVPILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 39 ~P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~------g---~~~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
.=++||++. .-..+.+.++..+||+|..+.+ | +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 86 (95)
T 2ek1_A 17 VIKVQNMPF---TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (95)
T ss_dssp EEEEECCCT---TCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 346788753 3355667788889997642221 1 1245667899999988864 554454443
No 244
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=23.06 E-value=1.3e+02 Score=18.12 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCCCCCCC
Q 021726 8 LLVPIFLIPIILHVQRYKTIKSIALPPGPRGL 39 (308)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~lpPGP~~~ 39 (308)
=+..++.++++-|+.-|-. ++..|||.|+
T Consensus 26 ~~~~F~~iAvvAH~L~~~w---rPWl~g~~g~ 54 (55)
T 1wrg_A 26 SILVFFGVAAFAHLLVWIW---RPWVPGPNGY 54 (55)
T ss_dssp HHHHHHHHHHHHHHHHSSC---SSSSCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHh---cccCCCcccC
Confidence 3455666777777766643 3466888764
No 245
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=22.48 E-value=1.6e+02 Score=21.41 Aligned_cols=50 Identities=18% Similarity=0.312 Sum_probs=34.9
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCc--------CEEEecCHHHHHHHHHh
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSV--------PILVVSSAKMAEEVLKT 92 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~--------~~vvi~~pe~ikevl~~ 92 (308)
-++||+.. .-....+.++..+||+|..+.+-.. -.|-..+++.++.++..
T Consensus 98 l~v~nl~~---~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 98 LFIGMISK---KCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEcCCCC---cCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHH
Confidence 35666542 2345677888889999988876322 35667899999988854
No 246
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.42 E-value=1.2e+02 Score=20.35 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=31.7
Q ss_pred HHHHHHHHhhCCeEEEEeCC-cCEEEecCHHHHHHHHHhcCccCCCC
Q 021726 55 NYFWRLSKQYGPMVSLRLGS-VPILVVSSAKMAEEVLKTHDLQFCSR 100 (308)
Q Consensus 55 ~~~~~~~~~YG~v~~~~~g~-~~~vvi~~pe~ikevl~~~~~~f~~R 100 (308)
..+.+...+||.|..+++-. +-+|...|.+.+..++.-++....+|
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGGGTTCEETTE
T ss_pred HHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHhcCCeEeCCe
Confidence 34455556799999998544 56777789999988886555444433
No 247
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=22.35 E-value=1.3e+02 Score=21.84 Aligned_cols=58 Identities=12% Similarity=0.315 Sum_probs=37.6
Q ss_pred ccccccCCCCCCchHHHHHHHHhh----C-------CeEEEEeCC---cCEEEecCHHHHHHHHHhcCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQY----G-------PMVSLRLGS---VPILVVSSAKMAEEVLKTHDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~Y----G-------~v~~~~~g~---~~~vvi~~pe~ikevl~~~~~~f~~Rp 101 (308)
++||++. .-..+.+.++..+| | +|..++++. .-.|...+++.++.++.-++..+.+|+
T Consensus 8 ~V~nLp~---~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 79 (172)
T 2g4b_A 8 YVGNIPF---GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS 79 (172)
T ss_dssp EEESCCT---TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred EEcCCCc---ccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCce
Confidence 5677653 23445555666666 7 888888763 356667899999999854554554443
No 248
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=21.57 E-value=1.2e+02 Score=21.19 Aligned_cols=66 Identities=9% Similarity=0.083 Sum_probs=41.4
Q ss_pred CCCCcccccccCCC--CCCchHHHHHHHHhhCCeEEEEeCCc-------------CEEEecCHHHHHHHHHh-cCccCCC
Q 021726 36 PRGLPFIGNLHQFD--YSNPQNYFWRLSKQYGPMVSLRLGSV-------------PILVVSSAKMAEEVLKT-HDLQFCS 99 (308)
Q Consensus 36 P~~~P~lGn~~~~~--~~~~~~~~~~~~~~YG~v~~~~~g~~-------------~~vvi~~pe~ikevl~~-~~~~f~~ 99 (308)
|...=+|.|+.... ..+..+.+.+...+||+|..+++-.. =.|-..+++.++.+... ++..|.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 44455778875321 23455667777789999998875421 23555688888777643 5556665
Q ss_pred CC
Q 021726 100 RP 101 (308)
Q Consensus 100 Rp 101 (308)
|+
T Consensus 99 R~ 100 (118)
T 3ue2_A 99 RK 100 (118)
T ss_dssp EE
T ss_pred cE
Confidence 54
No 249
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=21.49 E-value=2.2e+02 Score=20.16 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=33.3
Q ss_pred hHHHHHHHHhhCCeEEEEe-CCcCEEEe--cCHHHHHHHHHhcCccCC
Q 021726 54 QNYFWRLSKQYGPMVSLRL-GSVPILVV--SSAKMAEEVLKTHDLQFC 98 (308)
Q Consensus 54 ~~~~~~~~~~YG~v~~~~~-g~~~~vvi--~~pe~ikevl~~~~~~f~ 98 (308)
...+.+-.++||.|..... .+.+++.| .++..++.+|.+++..+.
T Consensus 37 ~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~kNG~ii~ 84 (119)
T 1wwh_A 37 ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFG 84 (119)
T ss_dssp HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTTTTCEET
T ss_pred HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHhCCeEec
Confidence 3344444567999998886 35688877 499999999998886664
No 250
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.00 E-value=32 Score=24.09 Aligned_cols=58 Identities=10% Similarity=0.000 Sum_probs=37.9
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCC---eEEEEeC--------CcCEEEecCHHHHHHHHHhcCccCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGP---MVSLRLG--------SVPILVVSSAKMAEEVLKTHDLQFCSR 100 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~---v~~~~~g--------~~~~vvi~~pe~ikevl~~~~~~f~~R 100 (308)
=++||+.. .-..+.+.++..+||. |..+.+- +.-.|...+++.++.++..++..+.+|
T Consensus 20 l~V~nLp~---~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr 88 (118)
T 2db1_A 20 VKLRGLPW---SCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHR 88 (118)
T ss_dssp EEEESCCT---TCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTE
T ss_pred EEEeCCCC---CCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCe
Confidence 46788763 3345667788888997 5555432 134677789999999987554444333
No 251
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.90 E-value=97 Score=21.34 Aligned_cols=57 Identities=14% Similarity=0.061 Sum_probs=38.6
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCeEEEEeC--------CcCEEEecCHHHHHHHHHhcCccCCCC
Q 021726 40 PFIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLG--------SVPILVVSSAKMAEEVLKTHDLQFCSR 100 (308)
Q Consensus 40 P~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g--------~~~~vvi~~pe~ikevl~~~~~~f~~R 100 (308)
=++||+.. .-..+.+.++.+.| .|..+.+. +.-.|...+++.++.++..++..+.+|
T Consensus 19 v~V~nLp~---~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr 83 (109)
T 2dnn_A 19 VSVHGMPF---SAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQR 83 (109)
T ss_dssp EEEECCCS---SCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTE
T ss_pred EEEeCCCC---CCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCe
Confidence 46777653 34556677787888 67777763 235677789999999986555544444
No 252
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=20.63 E-value=22 Score=29.75 Aligned_cols=93 Identities=23% Similarity=0.191 Sum_probs=51.2
Q ss_pred HHHhhCCeEEEEeCCcCEEEecCHHHHHHHHHhcCccCCCCCCcccccc-------cc--cCCcceEeccCChhHHHHHH
Q 021726 60 LSKQYGPMVSLRLGSVPILVVSSAKMAEEVLKTHDLQFCSRPALLSQQK-------VS--YNGLDVAFAPYNAYWREIRK 130 (308)
Q Consensus 60 ~~~~YG~v~~~~~g~~~~vvi~~pe~ikevl~~~~~~f~~Rp~~~~~~~-------~~--~~~~~~~~~~~g~~Wk~~Rr 130 (308)
+...|||. +..|||.|+..|++-|.+-. ...+.-..+..++ +. ....+.+.-.++..||..|-
T Consensus 140 fsAlyGpa-------r~AIVV~Dl~~~~~~L~~l~-dcPeDLyLIegd~daFdDs~~~~eele~~v~V~~s~rqlRySr~ 211 (302)
T 3ibp_A 140 FSALYGPS-------RHAIVVPDLSQVTEHLEGLT-DCPEDLYLIEGDPQSFDDSVFSVDELEKAVVVKIADRQWRYSRF 211 (302)
T ss_dssp HHHHTGGG-------GSEEECSSCHHHHHHHTTCC-SSCSSCEEECSCSTTCCCCCCCEEEETTEEEEEEETTEEEEEEC
T ss_pred HHHHhccc-------ceeeEeCCHHHHHHHHhhcc-CCCcceEEeeCChhhhccccchHHHhcCCeEEEeCCceeeecCC
Confidence 45567773 68999999999999995432 1111111110000 00 00223333335677776553
Q ss_pred HHHHhhCChHHHhhhHHHHHHHHHHHHHHHH
Q 021726 131 ICVVHLFNSNRVQSFRPIREGEVSILIEKVS 161 (308)
Q Consensus 131 ~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~ 161 (308)
= ..|+|+..+=.+....+..+.+.+.+..+
T Consensus 212 P-e~PlfGraARE~rle~L~~ere~~~e~~a 241 (302)
T 3ibp_A 212 P-EVPLFGRAARESRIESLHAEREVLSERFA 241 (302)
T ss_dssp C-SSCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 24888876655556666666666666554
No 253
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=20.42 E-value=1.5e+02 Score=22.20 Aligned_cols=58 Identities=16% Similarity=0.299 Sum_probs=37.6
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCeEEEEeCCc---------CEEEecCHHHHHHHHHh-cCccCCCCC
Q 021726 41 FIGNLHQFDYSNPQNYFWRLSKQYGPMVSLRLGSV---------PILVVSSAKMAEEVLKT-HDLQFCSRP 101 (308)
Q Consensus 41 ~lGn~~~~~~~~~~~~~~~~~~~YG~v~~~~~g~~---------~~vvi~~pe~ikevl~~-~~~~f~~Rp 101 (308)
++||+.. .-....+.++..+||+|..+.+... -.|-..+++.++.++.. ++..+.+|+
T Consensus 118 ~v~nl~~---~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 185 (198)
T 2yh0_A 118 FIGGLPN---YLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 185 (198)
T ss_dssp EEECCCT---TCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCC---CCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 5666542 2345677788889999988876422 34566788888888764 554454443
Done!