BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021727
         (308 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QH1|A Chain A, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
           Fe+2-Bound State
 pdb|2QH1|B Chain B, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
           Fe+2-Bound State
          Length = 198

 Score = 28.9 bits (63), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 213 RLSHSDFRTVYWNAEKTASSTYCAAKVLDFELLTKLSMGSSSCKSLLVLAAVSSIKRRKV 272
           ++ +S+F+TV WN     ++ + A K+++   L  L +   +   + +L+  S IKR   
Sbjct: 27  KIMNSNFKTVNWN-----TTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIP 81

Query: 273 RTDSDDNTSIIAGATRPFP 291
           R    D   I     +P P
Sbjct: 82  RNKKPDEVPIRLVMRKPIP 100


>pdb|1PVM|A Chain A, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
           Of Unknown Function From Thermoplasma Acidophilum
 pdb|1PVM|B Chain B, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
           Of Unknown Function From Thermoplasma Acidophilum
          Length = 184

 Score = 28.5 bits (62), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 213 RLSHSDFRTVYWNAEKTASSTYCAAKVLDFELLTKLSMGSSSCKSLLVLAAVSSIKRRKV 272
           ++ +S+F+TV WN     ++ + A K+++   L  L +   +   + +L+  S IKR   
Sbjct: 13  KIMNSNFKTVNWN-----TTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIP 67

Query: 273 RTDSDDNTSIIAGATRPFP 291
           R    D   I     +P P
Sbjct: 68  RNKKPDEVPIRLVMRKPIP 86


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.131    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,989,429
Number of Sequences: 62578
Number of extensions: 167715
Number of successful extensions: 391
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 391
Number of HSP's gapped (non-prelim): 2
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)