Query 021727
Match_columns 308
No_of_seqs 123 out of 328
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 05:12:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1962 B-cell receptor-associ 100.0 3.7E-44 8.1E-49 325.6 23.8 208 1-213 1-215 (216)
2 PF05529 Bap31: B-cell recepto 100.0 4.7E-40 1E-44 292.6 20.8 180 2-194 5-192 (192)
3 COG5374 Uncharacterized conser 100.0 9.8E-30 2.1E-34 224.7 20.6 175 2-211 5-187 (192)
4 KOG1962 B-cell receptor-associ 98.6 2.6E-06 5.7E-11 78.5 16.9 156 45-207 45-202 (216)
5 PF11559 ADIP: Afadin- and alp 96.2 0.19 4.2E-06 43.2 13.8 90 105-208 36-125 (151)
6 COG4372 Uncharacterized protei 96.1 0.11 2.3E-06 52.3 13.1 116 93-208 52-168 (499)
7 PRK11637 AmiB activator; Provi 96.1 0.085 1.8E-06 52.7 12.4 63 146-208 72-134 (428)
8 PF02183 HALZ: Homeobox associ 95.6 0.024 5.2E-07 40.3 4.5 34 176-209 4-37 (45)
9 PRK09039 hypothetical protein; 94.3 2.9 6.3E-05 41.1 16.5 48 150-197 138-185 (343)
10 PF14662 CCDC155: Coiled-coil 94.2 0.7 1.5E-05 42.4 11.2 77 111-194 5-84 (193)
11 PF08614 ATG16: Autophagy prot 94.1 0.37 8.1E-06 43.3 9.2 63 144-206 118-180 (194)
12 PF00038 Filament: Intermediat 94.1 1.6 3.5E-05 41.3 14.0 30 105-134 9-38 (312)
13 PRK11637 AmiB activator; Provi 93.4 0.74 1.6E-05 46.0 10.8 56 146-201 79-134 (428)
14 KOG0995 Centromere-associated 93.4 0.3 6.5E-06 51.0 8.1 66 153-218 291-359 (581)
15 PF06810 Phage_GP20: Phage min 93.1 0.73 1.6E-05 40.6 9.0 50 154-203 25-77 (155)
16 COG5185 HEC1 Protein involved 92.7 14 0.00031 38.5 19.0 58 156-213 330-390 (622)
17 PF04156 IncA: IncA protein; 92.6 6.8 0.00015 34.5 21.3 54 151-204 132-185 (191)
18 PF14662 CCDC155: Coiled-coil 92.1 3 6.6E-05 38.3 11.9 25 111-135 33-57 (193)
19 TIGR03752 conj_TIGR03752 integ 91.4 2.8 6.1E-05 43.2 12.0 80 108-208 60-140 (472)
20 COG4942 Membrane-bound metallo 91.4 3.3 7.2E-05 42.2 12.4 94 90-200 17-110 (420)
21 PRK10884 SH3 domain-containing 91.2 1.9 4E-05 39.8 9.7 28 178-205 140-167 (206)
22 PF11932 DUF3450: Protein of u 91.2 5.2 0.00011 37.2 12.8 56 143-198 50-105 (251)
23 PF08317 Spc7: Spc7 kinetochor 91.0 2.5 5.5E-05 41.0 10.9 8 59-66 76-83 (325)
24 PF04156 IncA: IncA protein; 90.9 7.1 0.00015 34.4 12.8 57 152-208 126-182 (191)
25 TIGR03185 DNA_S_dndD DNA sulfu 90.9 3.1 6.8E-05 43.9 12.2 27 107-133 391-417 (650)
26 COG1579 Zn-ribbon protein, pos 90.6 2.3 4.9E-05 40.3 9.8 30 177-206 96-125 (239)
27 PF10473 CENP-F_leu_zip: Leuci 90.6 8.1 0.00017 33.8 12.5 29 107-135 24-52 (140)
28 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.6 7.4 0.00016 33.0 12.2 55 155-209 72-130 (132)
29 PF05266 DUF724: Protein of un 90.6 9.8 0.00021 34.7 13.6 12 55-66 51-62 (190)
30 PF13851 GAS: Growth-arrest sp 90.4 3.9 8.5E-05 37.4 11.0 13 155-167 68-80 (201)
31 COG3883 Uncharacterized protei 90.2 4.1 8.8E-05 39.2 11.2 41 149-189 52-92 (265)
32 PRK10884 SH3 domain-containing 90.2 3.4 7.4E-05 38.1 10.4 23 184-206 132-154 (206)
33 PF04111 APG6: Autophagy prote 90.0 4.2 9.1E-05 39.6 11.4 11 214-224 158-168 (314)
34 PF09726 Macoilin: Transmembra 90.0 3.6 7.9E-05 44.4 11.9 64 150-214 546-610 (697)
35 PF08614 ATG16: Autophagy prot 89.7 3 6.5E-05 37.5 9.5 22 151-172 118-139 (194)
36 PF10473 CENP-F_leu_zip: Leuci 89.4 6.2 0.00013 34.5 10.8 41 153-193 49-89 (140)
37 PRK12704 phosphodiesterase; Pr 89.4 9.8 0.00021 39.6 14.2 28 172-199 112-139 (520)
38 PF04111 APG6: Autophagy prote 89.2 3.4 7.4E-05 40.2 10.2 8 258-265 179-186 (314)
39 PF05483 SCP-1: Synaptonemal c 88.9 3.5 7.6E-05 44.4 10.5 42 176-217 593-634 (786)
40 PF11559 ADIP: Afadin- and alp 88.5 11 0.00023 32.4 11.7 48 160-207 98-149 (151)
41 PF07888 CALCOCO1: Calcium bin 88.3 5.8 0.00013 41.7 11.6 48 154-201 162-209 (546)
42 PF10186 Atg14: UV radiation r 88.2 10 0.00023 35.0 12.4 16 184-199 119-134 (302)
43 TIGR02168 SMC_prok_B chromosom 88.0 7.8 0.00017 42.3 13.0 47 163-209 316-362 (1179)
44 PF10481 CENP-F_N: Cenp-F N-te 87.9 8.3 0.00018 37.5 11.5 83 158-241 83-166 (307)
45 PHA02562 46 endonuclease subun 87.7 6.7 0.00014 39.9 11.6 51 156-206 344-394 (562)
46 PF10234 Cluap1: Clusterin-ass 87.4 5.7 0.00012 38.2 10.2 51 153-203 187-237 (267)
47 PF09738 DUF2051: Double stran 87.3 11 0.00023 37.0 12.1 95 113-214 83-177 (302)
48 PF07888 CALCOCO1: Calcium bin 86.8 7.4 0.00016 41.0 11.3 44 153-196 203-246 (546)
49 PF07106 TBPIP: Tat binding pr 86.6 4.7 0.0001 35.3 8.6 61 144-204 74-136 (169)
50 PF12777 MT: Microtubule-bindi 86.3 0.83 1.8E-05 44.7 4.0 32 93-124 192-224 (344)
51 COG3879 Uncharacterized protei 86.1 17 0.00037 34.7 12.5 31 146-176 54-84 (247)
52 smart00787 Spc7 Spc7 kinetocho 86.0 9 0.00019 37.5 10.9 32 177-208 225-256 (312)
53 PF00038 Filament: Intermediat 85.8 22 0.00047 33.6 13.3 26 104-129 15-40 (312)
54 COG1196 Smc Chromosome segrega 85.5 7.5 0.00016 44.0 11.5 39 164-202 440-478 (1163)
55 PF12718 Tropomyosin_1: Tropom 85.4 6.6 0.00014 34.1 8.8 23 150-172 36-58 (143)
56 PF07407 Seadorna_VP6: Seadorn 85.2 3.3 7.1E-05 41.2 7.4 56 141-196 31-88 (420)
57 KOG0977 Nuclear envelope prote 84.8 13 0.00029 39.1 12.0 30 104-133 46-75 (546)
58 PF07106 TBPIP: Tat binding pr 84.7 4.9 0.00011 35.2 7.7 63 147-209 70-134 (169)
59 PF12329 TMF_DNA_bd: TATA elem 84.6 9.3 0.0002 29.7 8.4 19 178-196 48-66 (74)
60 PF00261 Tropomyosin: Tropomyo 84.4 28 0.0006 32.3 13.0 56 153-208 173-228 (237)
61 PF05266 DUF724: Protein of un 84.3 21 0.00045 32.6 11.8 20 44-63 43-62 (190)
62 PF14235 DUF4337: Domain of un 84.2 7.6 0.00017 34.3 8.7 44 159-202 69-112 (157)
63 PF10211 Ax_dynein_light: Axon 83.4 35 0.00075 30.9 13.9 59 150-208 128-187 (189)
64 smart00503 SynN Syntaxin N-ter 83.1 22 0.00047 28.4 12.1 30 179-208 84-113 (117)
65 PRK12704 phosphodiesterase; Pr 82.7 29 0.00063 36.2 13.6 42 165-206 98-139 (520)
66 KOG1760 Molecular chaperone Pr 82.5 9.3 0.0002 33.0 8.2 31 106-136 22-52 (131)
67 KOG0999 Microtubule-associated 82.4 7.1 0.00015 41.3 8.8 90 150-244 9-114 (772)
68 PF06005 DUF904: Protein of un 82.3 7.6 0.00016 30.2 7.0 18 185-202 40-57 (72)
69 KOG0804 Cytoplasmic Zn-finger 82.3 29 0.00064 35.9 13.0 94 115-208 348-445 (493)
70 KOG0243 Kinesin-like protein [ 82.3 16 0.00035 41.2 12.0 101 111-211 408-517 (1041)
71 PF09730 BicD: Microtubule-ass 82.1 20 0.00043 39.0 12.4 33 176-208 103-145 (717)
72 KOG0933 Structural maintenance 82.0 9.7 0.00021 42.8 10.1 58 158-215 817-881 (1174)
73 PF10234 Cluap1: Clusterin-ass 81.4 19 0.00041 34.7 10.8 58 151-208 178-235 (267)
74 PF06810 Phage_GP20: Phage min 81.2 9.7 0.00021 33.5 8.2 52 151-202 15-69 (155)
75 PF11932 DUF3450: Protein of u 80.8 20 0.00044 33.3 10.7 22 178-199 71-92 (251)
76 PHA02562 46 endonuclease subun 80.6 16 0.00034 37.3 10.7 16 108-123 300-315 (562)
77 PF06156 DUF972: Protein of un 80.6 12 0.00025 31.3 8.0 50 156-212 8-57 (107)
78 PF04849 HAP1_N: HAP1 N-termin 80.4 23 0.0005 34.8 11.2 98 111-208 164-265 (306)
79 KOG0995 Centromere-associated 79.9 89 0.0019 33.3 16.2 42 178-221 295-336 (581)
80 PF02403 Seryl_tRNA_N: Seryl-t 79.8 22 0.00047 28.7 9.3 20 179-198 69-88 (108)
81 TIGR03185 DNA_S_dndD DNA sulfu 79.5 22 0.00048 37.6 11.7 47 152-198 424-470 (650)
82 TIGR03319 YmdA_YtgF conserved 79.4 47 0.001 34.7 13.7 38 166-203 93-130 (514)
83 PF07200 Mod_r: Modifier of ru 79.3 22 0.00048 30.2 9.7 39 162-200 54-92 (150)
84 PF06008 Laminin_I: Laminin Do 79.3 51 0.0011 30.8 12.9 97 105-208 15-111 (264)
85 KOG0971 Microtubule-associated 79.1 37 0.00081 38.1 13.2 66 143-208 369-441 (1243)
86 PF10146 zf-C4H2: Zinc finger- 79.1 57 0.0012 30.7 14.6 49 158-206 55-103 (230)
87 PF13094 CENP-Q: CENP-Q, a CEN 79.1 14 0.0003 32.1 8.4 50 156-205 41-91 (160)
88 COG2433 Uncharacterized conser 79.0 19 0.00041 38.5 10.7 27 103-129 374-400 (652)
89 PF10205 KLRAQ: Predicted coil 78.4 38 0.00083 28.2 11.3 46 156-201 26-71 (102)
90 TIGR02680 conserved hypothetic 78.3 21 0.00046 41.3 11.8 47 151-197 278-324 (1353)
91 smart00787 Spc7 Spc7 kinetocho 78.2 33 0.00071 33.6 11.5 56 150-205 205-260 (312)
92 PF07061 Swi5: Swi5; InterPro 78.1 8.6 0.00019 30.7 6.2 22 184-205 32-53 (83)
93 PF00261 Tropomyosin: Tropomyo 78.1 48 0.001 30.7 12.2 49 158-206 171-219 (237)
94 TIGR03545 conserved hypothetic 78.1 12 0.00025 39.5 9.0 41 150-190 213-253 (555)
95 PF12718 Tropomyosin_1: Tropom 77.9 46 0.00099 28.9 11.5 52 153-204 84-135 (143)
96 COG4026 Uncharacterized protei 77.8 21 0.00046 34.0 9.6 50 152-208 152-201 (290)
97 PF15188 CCDC-167: Coiled-coil 77.7 9.9 0.00021 30.7 6.5 27 176-202 42-68 (85)
98 PF09403 FadA: Adhesion protei 77.2 25 0.00054 30.2 9.2 90 105-202 18-107 (126)
99 TIGR03319 YmdA_YtgF conserved 77.0 50 0.0011 34.4 13.2 37 163-199 97-133 (514)
100 PF10146 zf-C4H2: Zinc finger- 77.0 37 0.00081 31.9 11.1 17 192-208 82-98 (230)
101 PF03962 Mnd1: Mnd1 family; I 76.9 11 0.00025 34.0 7.5 20 108-127 63-82 (188)
102 PF12777 MT: Microtubule-bindi 76.9 6.4 0.00014 38.5 6.4 15 42-56 116-130 (344)
103 PF13851 GAS: Growth-arrest sp 76.9 56 0.0012 29.8 12.1 29 169-197 99-127 (201)
104 KOG0250 DNA repair protein RAD 76.8 27 0.00058 39.5 11.6 39 161-199 392-430 (1074)
105 KOG2264 Exostosin EXT1L [Signa 76.8 8.6 0.00019 41.0 7.4 47 155-201 106-152 (907)
106 PF05529 Bap31: B-cell recepto 76.8 54 0.0012 29.1 17.3 30 176-205 160-189 (192)
107 KOG0996 Structural maintenance 76.7 22 0.00047 40.7 10.8 49 157-205 543-591 (1293)
108 PF14584 DUF4446: Protein of u 76.7 29 0.00063 30.6 9.8 36 94-129 2-38 (151)
109 COG2433 Uncharacterized conser 76.5 30 0.00065 37.0 11.3 8 246-253 550-557 (652)
110 PF03954 Lectin_N: Hepatic lec 76.4 15 0.00034 32.1 7.8 75 94-174 38-112 (138)
111 TIGR02894 DNA_bind_RsfA transc 76.4 28 0.00061 31.2 9.6 46 157-202 105-150 (161)
112 PF10392 COG5: Golgi transport 76.3 18 0.0004 30.6 8.2 39 172-210 67-109 (132)
113 PRK15422 septal ring assembly 76.1 38 0.00083 27.1 9.4 55 147-208 16-70 (79)
114 PF10805 DUF2730: Protein of u 75.8 43 0.00094 27.5 11.6 25 175-199 77-101 (106)
115 PF15619 Lebercilin: Ciliary p 75.7 57 0.0012 29.8 11.7 37 159-195 121-157 (194)
116 KOG0963 Transcription factor/C 75.5 42 0.00092 35.9 12.1 109 95-204 230-357 (629)
117 KOG4403 Cell surface glycoprot 75.5 38 0.00082 35.1 11.3 59 149-207 302-377 (575)
118 PRK13729 conjugal transfer pil 75.0 11 0.00023 39.1 7.5 30 178-207 91-120 (475)
119 KOG4593 Mitotic checkpoint pro 74.6 48 0.001 36.0 12.3 123 107-229 422-550 (716)
120 PRK09039 hypothetical protein; 74.6 51 0.0011 32.5 11.9 50 154-203 135-184 (343)
121 PF12761 End3: Actin cytoskele 74.4 25 0.00055 32.4 9.0 85 110-204 99-194 (195)
122 PRK13922 rod shape-determining 73.9 29 0.00063 32.5 9.7 18 192-209 94-111 (276)
123 cd00179 SynN Syntaxin N-termin 73.4 53 0.0012 27.5 11.1 28 180-207 84-111 (151)
124 PF13805 Pil1: Eisosome compon 73.4 74 0.0016 30.8 12.3 94 105-198 101-209 (271)
125 PF04136 Sec34: Sec34-like fam 73.0 44 0.00096 29.3 10.0 61 157-217 22-88 (157)
126 PF06005 DUF904: Protein of un 72.9 42 0.00092 26.1 9.5 18 150-167 19-36 (72)
127 PF06156 DUF972: Protein of un 72.7 16 0.00034 30.5 6.7 26 144-169 31-56 (107)
128 COG1579 Zn-ribbon protein, pos 72.7 60 0.0013 30.8 11.4 41 168-208 94-134 (239)
129 PRK02224 chromosome segregatio 72.6 41 0.0009 36.5 11.7 12 289-300 776-787 (880)
130 KOG1003 Actin filament-coating 72.2 45 0.00098 31.0 10.1 50 153-202 134-183 (205)
131 PF15254 CCDC14: Coiled-coil d 72.1 34 0.00074 37.6 10.6 55 151-205 496-550 (861)
132 TIGR01061 parC_Gpos DNA topois 72.1 37 0.0008 37.0 11.1 33 94-127 371-403 (738)
133 PF02403 Seryl_tRNA_N: Seryl-t 71.8 20 0.00043 28.9 7.1 22 106-127 28-49 (108)
134 KOG0971 Microtubule-associated 71.8 30 0.00065 38.8 10.2 30 158-187 327-356 (1243)
135 KOG0288 WD40 repeat protein Ti 71.8 62 0.0013 33.3 11.8 23 107-129 27-49 (459)
136 PHA02047 phage lambda Rz1-like 71.7 14 0.00029 30.7 6.0 45 157-201 35-79 (101)
137 PF06103 DUF948: Bacterial pro 71.6 28 0.00061 27.2 7.7 22 179-200 42-63 (90)
138 PF12325 TMF_TATA_bd: TATA ele 71.2 25 0.00054 29.9 7.7 24 175-198 66-89 (120)
139 TIGR02894 DNA_bind_RsfA transc 71.2 33 0.00071 30.8 8.7 31 90-131 40-71 (161)
140 PRK05560 DNA gyrase subunit A; 70.9 43 0.00094 36.8 11.4 23 94-117 374-396 (805)
141 PF11544 Spc42p: Spindle pole 70.8 27 0.00058 27.7 7.2 45 155-206 4-48 (76)
142 PF04420 CHD5: CHD5-like prote 70.7 23 0.00051 31.1 7.8 26 189-214 71-96 (161)
143 PF05615 THOC7: Tho complex su 70.5 52 0.0011 27.8 9.6 19 150-168 89-107 (139)
144 PF09789 DUF2353: Uncharacteri 70.4 34 0.00073 33.8 9.5 32 177-208 133-164 (319)
145 COG3883 Uncharacterized protei 70.4 27 0.00059 33.7 8.6 45 145-189 55-99 (265)
146 PF13870 DUF4201: Domain of un 70.3 76 0.0016 27.9 11.2 57 154-210 103-164 (177)
147 PRK04863 mukB cell division pr 70.2 45 0.00098 39.3 11.8 33 168-200 381-413 (1486)
148 PRK05431 seryl-tRNA synthetase 70.0 31 0.00067 35.0 9.4 29 179-207 75-103 (425)
149 KOG0976 Rho/Rac1-interacting s 70.0 21 0.00045 39.6 8.5 23 150-172 142-164 (1265)
150 PF03962 Mnd1: Mnd1 family; I 69.6 87 0.0019 28.3 11.5 97 107-207 69-165 (188)
151 PF00170 bZIP_1: bZIP transcri 69.5 22 0.00048 26.2 6.3 22 178-199 41-62 (64)
152 COG4026 Uncharacterized protei 69.4 22 0.00048 33.8 7.6 57 143-199 150-206 (290)
153 KOG0999 Microtubule-associated 69.3 48 0.001 35.5 10.6 27 176-202 176-205 (772)
154 KOG0161 Myosin class II heavy 69.3 46 0.001 40.2 11.7 44 157-200 1098-1141(1930)
155 KOG0250 DNA repair protein RAD 69.1 50 0.0011 37.5 11.3 54 156-209 351-412 (1074)
156 PF12325 TMF_TATA_bd: TATA ele 69.0 72 0.0016 27.1 10.8 29 178-206 76-104 (120)
157 PRK13729 conjugal transfer pil 68.8 20 0.00044 37.1 7.9 37 150-186 84-120 (475)
158 PRK14148 heat shock protein Gr 68.5 12 0.00026 34.4 5.6 39 149-187 40-78 (195)
159 PF14197 Cep57_CLD_2: Centroso 68.3 53 0.0011 25.3 9.3 29 179-207 35-63 (69)
160 KOG0996 Structural maintenance 68.2 18 0.00039 41.3 7.8 66 160-225 974-1039(1293)
161 KOG0963 Transcription factor/C 67.3 63 0.0014 34.7 11.2 24 279-302 479-502 (629)
162 TIGR01005 eps_transp_fam exopo 67.3 63 0.0014 34.6 11.6 29 176-204 375-403 (754)
163 PRK14158 heat shock protein Gr 67.2 12 0.00026 34.3 5.3 41 149-189 40-80 (194)
164 PRK04778 septation ring format 67.1 66 0.0014 33.7 11.4 14 150-163 325-338 (569)
165 KOG4403 Cell surface glycoprot 67.0 41 0.00089 34.9 9.4 32 181-214 294-325 (575)
166 PF10224 DUF2205: Predicted co 66.9 54 0.0012 26.1 8.3 31 178-208 31-61 (80)
167 TIGR03007 pepcterm_ChnLen poly 66.9 78 0.0017 32.0 11.6 51 154-204 329-382 (498)
168 COG3167 PilO Tfp pilus assembl 66.8 21 0.00046 33.1 6.7 102 155-269 55-162 (211)
169 PRK14162 heat shock protein Gr 66.7 12 0.00026 34.3 5.3 42 148-189 38-79 (194)
170 COG4372 Uncharacterized protei 66.4 97 0.0021 31.9 11.8 11 47-57 54-64 (499)
171 PF12072 DUF3552: Domain of un 66.3 1E+02 0.0022 27.9 13.4 16 184-199 120-135 (201)
172 PRK14139 heat shock protein Gr 66.2 23 0.0005 32.3 7.0 41 149-189 32-72 (185)
173 TIGR01843 type_I_hlyD type I s 66.1 95 0.0021 30.0 11.7 29 164-192 204-232 (423)
174 PF07200 Mod_r: Modifier of ru 66.0 57 0.0012 27.7 9.1 36 158-193 57-92 (150)
175 PF07926 TPR_MLP1_2: TPR/MLP1/ 65.9 61 0.0013 27.4 9.1 31 178-208 60-90 (132)
176 KOG0933 Structural maintenance 65.9 52 0.0011 37.3 10.6 60 154-213 404-463 (1174)
177 PF03961 DUF342: Protein of un 65.5 48 0.0011 33.5 9.8 32 179-210 377-408 (451)
178 PF05701 WEMBL: Weak chloropla 64.8 55 0.0012 34.0 10.3 52 158-209 283-334 (522)
179 KOG2264 Exostosin EXT1L [Signa 64.7 33 0.00072 36.8 8.5 42 148-189 106-147 (907)
180 PRK13169 DNA replication intia 64.6 41 0.00088 28.3 7.6 48 156-210 8-55 (110)
181 PF06160 EzrA: Septation ring 64.6 1.9E+02 0.0041 30.4 14.4 56 156-211 101-156 (560)
182 KOG0994 Extracellular matrix g 64.5 70 0.0015 37.1 11.3 50 153-202 1623-1672(1758)
183 KOG0018 Structural maintenance 64.5 66 0.0014 36.6 11.1 31 178-208 304-334 (1141)
184 PRK11281 hypothetical protein; 64.4 56 0.0012 37.4 10.9 33 152-184 76-108 (1113)
185 PF14362 DUF4407: Domain of un 64.2 1.3E+02 0.0029 28.5 18.1 27 100-126 87-113 (301)
186 PF12709 Kinetocho_Slk19: Cent 64.2 69 0.0015 26.0 8.5 25 184-208 49-73 (87)
187 PRK13428 F0F1 ATP synthase sub 63.7 1.3E+02 0.0028 30.8 12.5 28 93-120 6-33 (445)
188 COG3074 Uncharacterized protei 63.5 72 0.0016 25.2 9.3 53 149-208 18-70 (79)
189 PF07407 Seadorna_VP6: Seadorn 63.2 33 0.00071 34.4 7.8 57 148-204 31-89 (420)
190 PRK04863 mukB cell division pr 63.1 70 0.0015 37.8 11.5 45 156-200 355-399 (1486)
191 PF03961 DUF342: Protein of un 63.1 29 0.00063 35.1 7.7 36 182-217 373-408 (451)
192 PF04728 LPP: Lipoprotein leuc 62.8 63 0.0014 24.2 8.0 17 154-170 8-24 (56)
193 KOG4643 Uncharacterized coiled 62.4 80 0.0017 35.9 11.2 43 156-198 488-530 (1195)
194 PF04728 LPP: Lipoprotein leuc 62.4 64 0.0014 24.2 7.9 29 149-177 10-38 (56)
195 KOG0249 LAR-interacting protei 62.3 82 0.0018 34.7 11.0 36 174-209 220-255 (916)
196 PF10779 XhlA: Haemolysin XhlA 62.3 46 0.00099 25.3 7.0 43 155-197 5-47 (71)
197 KOG0994 Extracellular matrix g 62.0 44 0.00094 38.6 9.2 30 174-203 1264-1293(1758)
198 PF15070 GOLGA2L5: Putative go 61.9 69 0.0015 34.4 10.5 53 154-206 207-259 (617)
199 PRK00888 ftsB cell division pr 61.5 89 0.0019 25.7 9.0 11 180-190 51-61 (105)
200 PF14523 Syntaxin_2: Syntaxin- 61.5 77 0.0017 24.8 12.1 31 179-209 66-96 (102)
201 COG1382 GimC Prefoldin, chaper 61.5 1E+02 0.0023 26.3 12.6 44 160-206 70-113 (119)
202 PF05377 FlaC_arch: Flagella a 61.3 52 0.0011 24.6 6.7 23 179-201 23-45 (55)
203 PLN02678 seryl-tRNA synthetase 61.3 52 0.0011 33.9 9.2 31 178-208 79-109 (448)
204 PF10168 Nup88: Nuclear pore c 61.2 1.5E+02 0.0033 32.3 13.1 32 177-208 639-670 (717)
205 KOG0161 Myosin class II heavy 61.1 42 0.00091 40.5 9.4 14 200-213 994-1007(1930)
206 PF10498 IFT57: Intra-flagella 60.8 1.2E+02 0.0025 30.5 11.3 54 164-219 274-327 (359)
207 KOG0981 DNA topoisomerase I [R 60.2 25 0.00053 37.6 6.6 83 147-229 634-723 (759)
208 PF05546 She9_MDM33: She9 / Md 60.1 43 0.00093 31.2 7.6 50 150-199 33-82 (207)
209 PF09325 Vps5: Vps5 C terminal 60.0 96 0.0021 27.8 9.9 6 161-166 168-173 (236)
210 PF09728 Taxilin: Myosin-like 59.8 1.4E+02 0.0031 29.0 11.6 48 160-207 241-288 (309)
211 COG4467 Regulator of replicati 59.8 40 0.00087 28.6 6.6 46 157-209 9-54 (114)
212 PF10458 Val_tRNA-synt_C: Valy 59.7 59 0.0013 24.3 7.1 23 150-172 5-27 (66)
213 PF05911 DUF869: Plant protein 59.6 2.2E+02 0.0047 31.6 13.9 38 94-131 534-571 (769)
214 PRK11281 hypothetical protein; 59.5 76 0.0016 36.4 10.8 73 156-230 128-203 (1113)
215 COG4768 Uncharacterized protei 59.0 35 0.00076 29.9 6.4 30 178-207 39-68 (139)
216 TIGR03007 pepcterm_ChnLen poly 58.9 1.6E+02 0.0035 29.7 12.2 27 105-131 209-235 (498)
217 PF04799 Fzo_mitofusin: fzo-li 58.9 43 0.00092 30.4 7.2 43 154-200 125-167 (171)
218 PRK09841 cryptic autophosphory 58.7 77 0.0017 34.2 10.4 30 102-131 269-298 (726)
219 PRK00106 hypothetical protein; 58.4 1.2E+02 0.0027 32.0 11.5 31 171-201 119-149 (535)
220 KOG0946 ER-Golgi vesicle-tethe 58.3 1.3E+02 0.0028 33.6 11.7 56 153-208 654-709 (970)
221 TIGR01063 gyrA DNA gyrase, A s 58.2 1.1E+02 0.0024 33.7 11.5 23 94-117 371-393 (800)
222 PRK12585 putative monovalent c 58.2 1.6E+02 0.0034 27.4 11.5 32 90-122 88-120 (197)
223 PRK13922 rod shape-determining 57.9 1.6E+02 0.0036 27.5 12.9 13 154-166 74-86 (276)
224 KOG1029 Endocytic adaptor prot 57.9 48 0.001 36.8 8.4 49 158-206 453-501 (1118)
225 COG4942 Membrane-bound metallo 57.4 1.6E+02 0.0034 30.4 11.6 22 176-197 223-244 (420)
226 PF10168 Nup88: Nuclear pore c 57.1 54 0.0012 35.7 8.8 48 161-208 570-617 (717)
227 PF15619 Lebercilin: Ciliary p 56.7 1.6E+02 0.0034 26.9 12.1 36 177-212 157-192 (194)
228 TIGR03752 conj_TIGR03752 integ 56.7 83 0.0018 32.8 9.7 30 105-134 64-93 (472)
229 PF06295 DUF1043: Protein of u 56.6 61 0.0013 27.5 7.5 17 155-171 31-47 (128)
230 KOG0243 Kinesin-like protein [ 56.6 1.1E+02 0.0025 34.7 11.3 72 151-224 499-570 (1041)
231 PF13815 Dzip-like_N: Iguana/D 56.5 42 0.0009 27.9 6.4 11 24-34 9-19 (118)
232 PF04977 DivIC: Septum formati 56.4 32 0.00069 25.7 5.2 11 179-189 40-50 (80)
233 PF09730 BicD: Microtubule-ass 56.3 1.3E+02 0.0029 32.9 11.6 45 146-190 101-148 (717)
234 PHA01750 hypothetical protein 56.3 67 0.0014 25.1 6.8 23 181-203 46-68 (75)
235 KOG0978 E3 ubiquitin ligase in 56.3 1.5E+02 0.0032 32.5 11.8 90 158-259 561-657 (698)
236 COG3074 Uncharacterized protei 56.2 99 0.0022 24.4 8.7 24 147-170 23-46 (79)
237 PF00170 bZIP_1: bZIP transcri 55.9 65 0.0014 23.7 6.7 27 179-205 35-61 (64)
238 PRK14161 heat shock protein Gr 55.7 44 0.00095 30.2 6.8 38 151-188 21-58 (178)
239 PF09726 Macoilin: Transmembra 55.6 79 0.0017 34.4 9.8 29 180-208 541-569 (697)
240 PF04420 CHD5: CHD5-like prote 55.4 14 0.00031 32.5 3.5 10 156-165 47-56 (161)
241 KOG0946 ER-Golgi vesicle-tethe 55.3 98 0.0021 34.5 10.3 60 152-211 809-868 (970)
242 PRK09343 prefoldin subunit bet 55.3 1.3E+02 0.0027 25.3 10.2 29 177-205 85-113 (121)
243 PRK13169 DNA replication intia 55.3 28 0.00062 29.2 5.1 25 144-168 31-55 (110)
244 PRK04778 septation ring format 55.3 2.4E+02 0.0053 29.5 13.1 31 159-189 400-430 (569)
245 PRK00106 hypothetical protein; 55.2 1.2E+02 0.0027 31.9 10.9 44 158-201 113-156 (535)
246 PRK11519 tyrosine kinase; Prov 55.2 99 0.0021 33.3 10.5 28 104-131 271-298 (719)
247 TIGR02449 conserved hypothetic 55.2 95 0.0021 23.9 7.9 29 179-207 23-51 (65)
248 PRK15422 septal ring assembly 55.1 1.1E+02 0.0024 24.5 9.6 31 178-208 26-63 (79)
249 PRK10636 putative ABC transpor 55.0 59 0.0013 34.4 8.6 59 150-208 564-629 (638)
250 PRK14155 heat shock protein Gr 54.9 32 0.00069 31.9 5.9 41 152-192 16-56 (208)
251 TIGR03495 phage_LysB phage lys 54.8 1.5E+02 0.0031 25.9 13.3 15 190-204 81-95 (135)
252 PLN02320 seryl-tRNA synthetase 54.8 75 0.0016 33.3 9.1 31 178-208 138-168 (502)
253 PF09789 DUF2353: Uncharacteri 54.5 2.3E+02 0.005 28.1 12.4 66 142-207 126-205 (319)
254 smart00338 BRLZ basic region l 54.5 48 0.001 24.4 5.8 20 179-198 42-61 (65)
255 TIGR02209 ftsL_broad cell divi 54.3 28 0.0006 26.7 4.6 11 179-189 47-57 (85)
256 PF14817 HAUS5: HAUS augmin-li 54.2 2E+02 0.0044 31.0 12.4 65 144-208 81-159 (632)
257 PRK14160 heat shock protein Gr 54.1 44 0.00096 31.1 6.7 30 179-208 70-99 (211)
258 TIGR01069 mutS2 MutS2 family p 54.0 87 0.0019 34.3 9.9 20 176-195 571-590 (771)
259 PF11262 Tho2: Transcription f 53.8 45 0.00097 32.2 7.0 33 176-208 52-84 (298)
260 PF15066 CAGE1: Cancer-associa 53.8 1.9E+02 0.0042 30.3 11.6 47 156-202 390-436 (527)
261 KOG3990 Uncharacterized conser 53.8 38 0.00082 32.8 6.2 35 150-184 226-260 (305)
262 PF05911 DUF869: Plant protein 53.0 1.4E+02 0.003 33.0 11.2 25 90-114 534-558 (769)
263 PRK14143 heat shock protein Gr 53.0 74 0.0016 30.1 8.1 40 149-188 67-106 (238)
264 PRK05561 DNA topoisomerase IV 52.9 1.4E+02 0.0031 32.7 11.2 22 94-116 384-405 (742)
265 PRK14140 heat shock protein Gr 52.8 33 0.00071 31.5 5.5 40 149-188 37-76 (191)
266 PF15058 Speriolin_N: Sperioli 52.5 41 0.00089 31.1 6.1 45 178-230 20-64 (200)
267 PRK14145 heat shock protein Gr 52.4 30 0.00065 31.9 5.2 39 149-187 45-83 (196)
268 COG1340 Uncharacterized archae 52.4 1.5E+02 0.0033 29.1 10.2 10 119-128 143-152 (294)
269 PRK15396 murein lipoprotein; P 52.4 76 0.0016 25.2 6.8 12 178-189 47-58 (78)
270 PHA03011 hypothetical protein; 52.3 26 0.00056 29.5 4.3 28 178-205 58-85 (120)
271 PRK15396 murein lipoprotein; P 52.3 90 0.002 24.8 7.2 10 177-186 53-62 (78)
272 TIGR00606 rad50 rad50. This fa 52.3 1.4E+02 0.0031 34.5 11.6 46 155-200 887-932 (1311)
273 PRK14151 heat shock protein Gr 52.2 68 0.0015 28.9 7.4 40 154-193 25-64 (176)
274 PF04012 PspA_IM30: PspA/IM30 52.1 1.8E+02 0.0039 26.2 13.4 96 105-202 49-144 (221)
275 PF04350 PilO: Pilus assembly 51.6 18 0.0004 29.9 3.5 19 178-196 24-42 (144)
276 COG5185 HEC1 Protein involved 51.5 1.5E+02 0.0032 31.4 10.4 11 55-65 232-242 (622)
277 PRK14474 F0F1 ATP synthase sub 51.4 2.1E+02 0.0047 26.9 12.6 23 96-118 13-35 (250)
278 PF09738 DUF2051: Double stran 51.4 90 0.002 30.6 8.6 52 157-208 113-164 (302)
279 PF05667 DUF812: Protein of un 51.4 87 0.0019 33.4 9.1 50 157-206 329-378 (594)
280 PF13600 DUF4140: N-terminal d 51.4 22 0.00049 28.4 3.8 34 156-189 70-103 (104)
281 TIGR01010 BexC_CtrB_KpsE polys 51.4 2.4E+02 0.0052 27.4 13.1 13 190-202 277-289 (362)
282 KOG3156 Uncharacterized membra 51.3 74 0.0016 29.9 7.6 22 145-166 119-140 (220)
283 PF10481 CENP-F_N: Cenp-F N-te 51.3 2.3E+02 0.005 27.8 11.1 80 145-224 63-142 (307)
284 COG5415 Predicted integral mem 51.1 1.3E+02 0.0028 28.5 9.1 33 90-122 70-111 (251)
285 PRK14161 heat shock protein Gr 50.7 39 0.00085 30.5 5.7 35 174-208 23-57 (178)
286 TIGR00414 serS seryl-tRNA synt 50.6 1.2E+02 0.0027 30.6 9.8 23 106-128 29-51 (418)
287 TIGR02449 conserved hypothetic 50.3 1.1E+02 0.0025 23.4 7.4 46 145-190 17-62 (65)
288 PRK14154 heat shock protein Gr 50.3 76 0.0016 29.5 7.6 39 152-190 55-93 (208)
289 PRK05431 seryl-tRNA synthetase 49.9 64 0.0014 32.7 7.6 24 106-129 27-50 (425)
290 TIGR01005 eps_transp_fam exopo 49.9 2.8E+02 0.0061 29.8 12.8 22 107-128 288-309 (754)
291 PF10224 DUF2205: Predicted co 49.8 1.3E+02 0.0029 23.9 7.9 48 151-198 18-65 (80)
292 TIGR00606 rad50 rad50. This fa 49.7 1.1E+02 0.0024 35.4 10.3 16 113-128 798-813 (1311)
293 PF07334 IFP_35_N: Interferon- 49.6 32 0.00069 27.3 4.2 21 147-167 5-25 (76)
294 PF07989 Microtub_assoc: Micro 49.4 54 0.0012 25.6 5.5 26 150-175 44-69 (75)
295 PRK09174 F0F1 ATP synthase sub 49.3 2.1E+02 0.0046 26.2 10.8 12 174-185 153-164 (204)
296 cd07652 F-BAR_Rgd1 The F-BAR ( 49.3 1.1E+02 0.0024 28.3 8.6 32 174-205 115-146 (234)
297 KOG0978 E3 ubiquitin ligase in 49.1 2.6E+02 0.0057 30.6 12.3 55 154-208 571-625 (698)
298 cd07605 I-BAR_IMD Inverse (I)- 48.9 1.2E+02 0.0025 28.5 8.6 30 159-188 115-144 (223)
299 PLN02678 seryl-tRNA synthetase 48.9 67 0.0014 33.1 7.6 25 105-129 31-55 (448)
300 PF12128 DUF3584: Protein of u 48.8 1.4E+02 0.003 34.3 10.8 21 179-199 687-707 (1201)
301 KOG1029 Endocytic adaptor prot 48.8 2.8E+02 0.0062 31.1 12.4 36 160-195 546-581 (1118)
302 smart00338 BRLZ basic region l 48.7 86 0.0019 23.1 6.4 28 179-206 35-62 (65)
303 PF05325 DUF730: Protein of un 48.6 75 0.0016 26.6 6.5 16 181-196 103-118 (122)
304 PRK13979 DNA topoisomerase IV 48.5 2.5E+02 0.0054 31.9 12.4 95 94-194 390-491 (957)
305 PF07139 DUF1387: Protein of u 48.5 1.3E+02 0.0029 29.6 9.2 28 97-124 190-217 (302)
306 TIGR01554 major_cap_HK97 phage 48.4 1.2E+02 0.0026 29.7 9.2 11 120-130 5-15 (378)
307 PRK14163 heat shock protein Gr 48.3 45 0.00098 31.2 5.8 39 151-189 42-80 (214)
308 KOG2751 Beclin-like protein [S 48.1 3.4E+02 0.0073 28.2 12.9 41 153-193 194-234 (447)
309 KOG3119 Basic region leucine z 48.0 30 0.00066 33.0 4.8 20 178-197 230-249 (269)
310 PF03245 Phage_lysis: Bacterio 47.6 1.5E+02 0.0033 25.0 8.5 26 190-215 41-66 (125)
311 KOG4571 Activating transcripti 47.4 48 0.001 32.4 6.0 35 157-198 249-283 (294)
312 PF12128 DUF3584: Protein of u 47.3 2.2E+02 0.0048 32.7 12.1 74 174-248 494-568 (1201)
313 PF09728 Taxilin: Myosin-like 47.2 84 0.0018 30.6 7.7 32 171-202 37-68 (309)
314 KOG0982 Centrosomal protein Nu 47.2 2.7E+02 0.0058 29.0 11.4 56 144-199 306-361 (502)
315 TIGR02680 conserved hypothetic 47.1 4.6E+02 0.0099 30.8 14.7 61 156-216 340-402 (1353)
316 PF10212 TTKRSYEDQ: Predicted 47.0 2.7E+02 0.0059 29.4 11.7 17 106-122 419-435 (518)
317 PF06548 Kinesin-related: Kine 46.8 2.2E+02 0.0047 29.8 10.7 19 176-194 454-472 (488)
318 KOG3595 Dyneins, heavy chain [ 46.6 36 0.00079 39.6 5.9 16 42-57 832-847 (1395)
319 PF14282 FlxA: FlxA-like prote 46.6 1.6E+02 0.0035 24.1 8.6 52 149-200 19-74 (106)
320 PRK14147 heat shock protein Gr 46.3 94 0.002 27.9 7.3 36 154-189 23-58 (172)
321 PF15290 Syntaphilin: Golgi-lo 46.2 83 0.0018 30.8 7.3 17 156-172 89-105 (305)
322 PRK14153 heat shock protein Gr 46.0 51 0.0011 30.3 5.6 35 153-187 37-71 (194)
323 PF10174 Cast: RIM-binding pro 45.9 2.1E+02 0.0045 31.7 11.1 8 179-186 394-401 (775)
324 PRK09841 cryptic autophosphory 45.9 3.4E+02 0.0075 29.3 12.8 15 263-277 444-458 (726)
325 PF10018 Med4: Vitamin-D-recep 45.9 1.9E+02 0.004 25.9 9.3 10 283-292 119-128 (188)
326 PF13166 AAA_13: AAA domain 45.8 2.4E+02 0.0053 29.7 11.5 19 245-263 498-516 (712)
327 PF05667 DUF812: Protein of un 45.8 1.6E+02 0.0034 31.5 10.0 41 176-216 446-486 (594)
328 PF02388 FemAB: FemAB family; 45.8 1E+02 0.0022 30.9 8.2 47 155-205 248-294 (406)
329 KOG4674 Uncharacterized conser 45.7 3.4E+02 0.0073 33.1 13.2 26 161-186 729-754 (1822)
330 PF10779 XhlA: Haemolysin XhlA 45.7 1.3E+02 0.0027 22.9 7.0 33 157-189 14-46 (71)
331 PRK14160 heat shock protein Gr 45.6 1.4E+02 0.0031 27.8 8.6 37 150-186 62-98 (211)
332 PF02183 HALZ: Homeobox associ 45.3 72 0.0016 22.6 5.2 30 178-207 13-42 (45)
333 TIGR00634 recN DNA repair prot 45.2 3.6E+02 0.0078 28.1 12.5 34 172-205 341-374 (563)
334 PRK02119 hypothetical protein; 45.1 1.4E+02 0.0031 23.0 7.7 29 179-207 25-53 (73)
335 PF05325 DUF730: Protein of un 45.1 94 0.002 26.0 6.5 37 155-191 84-120 (122)
336 PF05615 THOC7: Tho complex su 45.1 1.9E+02 0.0041 24.4 11.8 29 171-199 89-123 (139)
337 PF04136 Sec34: Sec34-like fam 45.0 1.7E+02 0.0037 25.6 8.7 35 171-209 53-87 (157)
338 cd07653 F-BAR_CIP4-like The F- 44.8 1.6E+02 0.0034 27.0 8.8 39 171-209 113-151 (251)
339 COG1842 PspA Phage shock prote 44.8 2.7E+02 0.0058 26.1 13.6 89 105-202 50-138 (225)
340 PF12711 Kinesin-relat_1: Kine 44.5 1.7E+02 0.0037 23.7 8.0 45 149-194 24-68 (86)
341 PF04102 SlyX: SlyX; InterPro 44.4 1.4E+02 0.003 22.6 7.2 30 179-208 20-49 (69)
342 KOG4001 Axonemal dynein light 44.3 2.8E+02 0.0062 26.2 10.8 59 145-209 195-253 (259)
343 PRK14153 heat shock protein Gr 44.3 75 0.0016 29.2 6.5 34 176-209 39-72 (194)
344 KOG0979 Structural maintenance 44.2 3.1E+02 0.0066 31.4 12.1 44 161-204 309-352 (1072)
345 PF03839 Sec62: Translocation 43.8 52 0.0011 30.9 5.5 12 13-24 120-132 (224)
346 PF08647 BRE1: BRE1 E3 ubiquit 43.8 1.7E+02 0.0037 23.5 10.8 44 154-197 29-72 (96)
347 PF14197 Cep57_CLD_2: Centroso 43.6 1.5E+02 0.0032 22.8 8.4 15 119-133 3-17 (69)
348 TIGR00219 mreC rod shape-deter 43.3 65 0.0014 30.9 6.2 15 195-209 95-109 (283)
349 PF15070 GOLGA2L5: Putative go 43.3 4.5E+02 0.0098 28.3 13.7 62 106-167 42-105 (617)
350 PF09744 Jnk-SapK_ap_N: JNK_SA 43.3 2.4E+02 0.0052 25.1 10.8 96 106-207 52-147 (158)
351 PRK10636 putative ABC transpor 43.2 99 0.0021 32.8 8.1 19 179-197 607-625 (638)
352 PLN02320 seryl-tRNA synthetase 43.0 91 0.002 32.7 7.6 15 240-255 212-226 (502)
353 PF10716 NdhL: NADH dehydrogen 42.9 1.1E+02 0.0024 24.6 6.4 34 3-36 14-53 (81)
354 PF05377 FlaC_arch: Flagella a 42.9 1E+02 0.0022 23.0 5.8 20 178-197 15-34 (55)
355 PF11853 DUF3373: Protein of u 42.9 27 0.00058 36.5 3.7 10 157-166 32-41 (489)
356 KOG0977 Nuclear envelope prote 42.9 3E+02 0.0064 29.4 11.3 23 110-132 109-131 (546)
357 TIGR00998 8a0101 efflux pump m 42.8 1.5E+02 0.0033 27.9 8.7 15 115-129 81-95 (334)
358 PF04859 DUF641: Plant protein 42.7 2.3E+02 0.0049 24.6 10.0 28 156-190 94-121 (131)
359 PF06103 DUF948: Bacterial pro 42.6 1.6E+02 0.0035 22.9 11.9 8 102-109 17-24 (90)
360 PF06295 DUF1043: Protein of u 42.5 1.6E+02 0.0035 24.9 7.9 12 155-166 38-49 (128)
361 KOG0979 Structural maintenance 42.5 2.1E+02 0.0046 32.7 10.5 45 156-200 255-299 (1072)
362 cd07647 F-BAR_PSTPIP The F-BAR 42.5 1.9E+02 0.0041 26.7 9.0 53 173-225 109-161 (239)
363 PF02841 GBP_C: Guanylate-bind 42.1 3E+02 0.0064 26.3 10.5 88 114-204 204-297 (297)
364 KOG4674 Uncharacterized conser 41.8 4E+02 0.0086 32.5 13.0 102 101-202 952-1057(1822)
365 TIGR03017 EpsF chain length de 41.6 3.6E+02 0.0078 26.7 13.5 12 265-276 418-429 (444)
366 KOG1937 Uncharacterized conser 41.6 1.3E+02 0.0028 31.5 8.2 48 152-208 472-519 (521)
367 PF04645 DUF603: Protein of un 41.6 2.8E+02 0.0061 25.4 10.0 12 155-166 118-129 (181)
368 KOG0964 Structural maintenance 41.5 2.5E+02 0.0054 32.2 10.8 53 153-205 415-467 (1200)
369 PRK10929 putative mechanosensi 41.4 1.5E+02 0.0033 34.0 9.6 30 153-182 62-91 (1109)
370 KOG4052 Uncharacterized conser 41.2 31 0.00068 31.3 3.4 23 177-199 145-167 (190)
371 TIGR03545 conserved hypothetic 41.2 78 0.0017 33.5 6.9 13 279-291 326-338 (555)
372 TIGR00219 mreC rod shape-deter 41.2 63 0.0014 31.0 5.8 12 155-166 72-83 (283)
373 PRK11519 tyrosine kinase; Prov 41.1 4.9E+02 0.011 28.1 13.0 27 177-203 370-396 (719)
374 PRK00409 recombination and DNA 41.1 3.7E+02 0.008 29.6 12.2 16 178-193 578-593 (782)
375 PF08112 ATP-synt_E_2: ATP syn 40.8 61 0.0013 24.1 4.3 30 157-199 12-41 (56)
376 PF05278 PEARLI-4: Arabidopsis 40.7 3.5E+02 0.0076 26.3 13.9 55 154-208 205-259 (269)
377 cd07658 F-BAR_NOSTRIN The F-BA 40.7 1.6E+02 0.0035 27.3 8.3 48 161-208 100-147 (239)
378 PF12761 End3: Actin cytoskele 40.6 1.1E+02 0.0023 28.4 6.8 39 153-191 100-142 (195)
379 PF05483 SCP-1: Synaptonemal c 40.5 2.8E+02 0.006 30.6 10.7 55 154-208 504-558 (786)
380 TIGR00414 serS seryl-tRNA synt 40.5 79 0.0017 32.0 6.6 22 181-202 80-101 (418)
381 PF15290 Syntaphilin: Golgi-lo 40.3 2E+02 0.0043 28.3 8.9 52 166-217 120-175 (305)
382 PF01166 TSC22: TSC-22/dip/bun 40.2 48 0.001 25.1 3.7 31 178-208 15-45 (59)
383 PF05622 HOOK: HOOK protein; 39.9 9.6 0.00021 40.9 0.0 57 150-206 364-420 (713)
384 TIGR01554 major_cap_HK97 phage 39.9 1.3E+02 0.0029 29.4 7.9 21 179-199 36-56 (378)
385 PRK05771 V-type ATP synthase s 39.3 1.1E+02 0.0025 32.3 7.8 32 100-131 93-124 (646)
386 PF10359 Fmp27_WPPW: RNA pol I 39.0 1.6E+02 0.0035 30.3 8.6 40 176-215 199-238 (475)
387 KOG4451 Uncharacterized conser 39.0 98 0.0021 29.7 6.5 39 93-131 22-60 (286)
388 PRK14143 heat shock protein Gr 38.6 78 0.0017 30.0 5.8 30 179-208 76-105 (238)
389 KOG0964 Structural maintenance 38.4 2.5E+02 0.0055 32.1 10.3 25 148-172 264-288 (1200)
390 PF05384 DegS: Sensor protein 38.4 1.6E+02 0.0034 26.3 7.4 48 177-224 34-84 (159)
391 PRK00373 V-type ATP synthase s 38.3 1.3E+02 0.0029 27.3 7.1 39 171-209 19-57 (204)
392 PF13815 Dzip-like_N: Iguana/D 38.2 1.2E+02 0.0025 25.2 6.3 8 178-185 109-116 (118)
393 KOG0288 WD40 repeat protein Ti 38.2 3.2E+02 0.0068 28.4 10.3 13 280-292 212-224 (459)
394 PF07989 Microtub_assoc: Micro 38.2 1.9E+02 0.0042 22.5 7.6 55 154-208 12-67 (75)
395 KOG4360 Uncharacterized coiled 38.1 2.4E+02 0.0053 30.0 9.6 17 154-170 231-247 (596)
396 PRK00295 hypothetical protein; 38.0 1.8E+02 0.0039 22.1 7.4 49 147-198 3-51 (68)
397 PRK05771 V-type ATP synthase s 37.9 1E+02 0.0022 32.7 7.3 45 155-199 214-259 (646)
398 PRK11677 hypothetical protein; 37.8 1.8E+02 0.004 25.2 7.6 16 156-171 36-51 (134)
399 cd07655 F-BAR_PACSIN The F-BAR 37.7 2.1E+02 0.0046 26.8 8.7 44 156-199 168-211 (258)
400 PF06459 RR_TM4-6: Ryanodine R 37.6 37 0.00081 32.7 3.6 26 83-111 164-189 (274)
401 PRK14141 heat shock protein Gr 37.6 67 0.0015 29.9 5.2 35 154-188 36-70 (209)
402 TIGR00309 V_ATPase_subD H(+)-t 37.6 1.3E+02 0.0029 27.4 7.1 38 171-208 17-54 (209)
403 PF05600 DUF773: Protein of un 37.6 2E+02 0.0043 30.1 9.1 7 181-187 485-491 (507)
404 PRK11147 ABC transporter ATPas 37.4 1.5E+02 0.0032 31.3 8.3 54 151-204 570-629 (635)
405 KOG0239 Kinesin (KAR3 subfamil 37.2 2.3E+02 0.0049 30.8 9.7 28 181-208 280-310 (670)
406 PRK14148 heat shock protein Gr 37.1 90 0.0019 28.7 5.8 31 178-208 48-78 (195)
407 KOG0962 DNA repair protein RAD 37.1 4.6E+02 0.0099 30.9 12.3 20 177-196 268-287 (1294)
408 cd07657 F-BAR_Fes_Fer The F-BA 36.8 2.4E+02 0.0053 26.3 8.8 41 172-212 114-154 (237)
409 PF15254 CCDC14: Coiled-coil d 36.7 3.6E+02 0.0079 30.1 11.0 24 149-172 462-485 (861)
410 KOG0972 Huntingtin interacting 36.6 4.5E+02 0.0097 26.3 10.8 52 160-211 270-328 (384)
411 COG1422 Predicted membrane pro 36.5 1.6E+02 0.0034 27.4 7.3 32 102-133 53-84 (201)
412 PF07254 DUF1434: Protein of u 36.5 1.1E+02 0.0023 26.5 5.9 48 5-69 16-63 (132)
413 cd07675 F-BAR_FNBP1L The F-BAR 36.4 3.9E+02 0.0084 25.5 12.2 61 161-221 104-166 (252)
414 cd07675 F-BAR_FNBP1L The F-BAR 36.3 2.7E+02 0.0059 26.6 9.1 46 155-200 161-207 (252)
415 KOG3647 Predicted coiled-coil 36.3 4.3E+02 0.0094 26.0 11.2 20 171-190 141-160 (338)
416 PRK14144 heat shock protein Gr 36.1 95 0.0021 28.7 5.8 35 153-187 49-83 (199)
417 PRK10869 recombination and rep 36.0 5.4E+02 0.012 27.0 12.5 36 171-206 335-370 (553)
418 PF05335 DUF745: Protein of un 35.8 3.5E+02 0.0075 24.8 10.5 40 159-198 133-172 (188)
419 PRK04406 hypothetical protein; 35.8 2.1E+02 0.0046 22.3 7.9 30 179-208 27-56 (75)
420 PF01486 K-box: K-box region; 35.8 2.3E+02 0.0049 22.6 10.1 51 156-208 49-99 (100)
421 PRK09973 putative outer membra 35.7 1.9E+02 0.0041 23.4 6.8 17 154-170 29-45 (85)
422 TIGR03017 EpsF chain length de 35.6 4.5E+02 0.0097 26.0 11.5 20 109-128 256-275 (444)
423 PRK14146 heat shock protein Gr 35.5 87 0.0019 29.2 5.6 30 156-185 61-90 (215)
424 PRK10361 DNA recombination pro 35.4 5.5E+02 0.012 26.9 14.3 12 203-214 145-156 (475)
425 PRK14147 heat shock protein Gr 35.2 38 0.00083 30.4 3.1 27 181-207 29-55 (172)
426 PF11471 Sugarporin_N: Maltopo 35.2 72 0.0016 24.0 4.1 27 155-181 31-57 (60)
427 PF05278 PEARLI-4: Arabidopsis 35.2 3.5E+02 0.0075 26.3 9.7 54 155-208 199-252 (269)
428 PF02388 FemAB: FemAB family; 35.2 2E+02 0.0044 28.8 8.5 51 144-198 244-294 (406)
429 KOG4643 Uncharacterized coiled 35.1 4E+02 0.0087 30.7 11.2 35 178-212 489-523 (1195)
430 PLN03229 acetyl-coenzyme A car 35.1 2.5E+02 0.0055 31.0 9.6 48 161-208 671-729 (762)
431 KOG4360 Uncharacterized coiled 35.1 5.9E+02 0.013 27.2 12.5 20 104-123 202-221 (596)
432 KOG4603 TBP-1 interacting prot 35.0 2.5E+02 0.0055 25.8 8.2 53 150-202 80-134 (201)
433 PRK14154 heat shock protein Gr 35.0 79 0.0017 29.4 5.2 28 181-208 63-90 (208)
434 PF10205 KLRAQ: Predicted coil 34.9 2.7E+02 0.0059 23.3 7.9 42 167-208 30-71 (102)
435 PRK14158 heat shock protein Gr 34.6 1E+02 0.0023 28.3 5.8 28 181-208 51-78 (194)
436 PF06785 UPF0242: Uncharacteri 34.5 2.8E+02 0.006 28.1 9.0 26 147-172 139-164 (401)
437 PRK15178 Vi polysaccharide exp 34.5 4.8E+02 0.01 27.0 11.1 42 147-188 284-332 (434)
438 KOG4673 Transcription factor T 34.3 2.1E+02 0.0045 31.6 8.7 60 150-209 705-764 (961)
439 PRK06569 F0F1 ATP synthase sub 34.1 3.4E+02 0.0073 24.2 14.4 16 178-193 111-126 (155)
440 PF05008 V-SNARE: Vesicle tran 34.1 2E+02 0.0044 21.6 7.5 47 154-200 30-77 (79)
441 PLN03229 acetyl-coenzyme A car 34.1 1.9E+02 0.0041 31.9 8.5 82 116-199 431-526 (762)
442 PF13514 AAA_27: AAA domain 33.8 4.7E+02 0.01 29.7 11.9 28 271-298 999-1029(1111)
443 PF05010 TACC: Transforming ac 33.7 3.6E+02 0.0079 25.0 9.3 87 119-215 7-93 (207)
444 cd07627 BAR_Vps5p The Bin/Amph 33.7 3.1E+02 0.0067 24.9 8.8 23 157-179 144-166 (216)
445 COG0172 SerS Seryl-tRNA synthe 33.6 1.1E+02 0.0023 31.6 6.3 77 103-182 25-101 (429)
446 KOG4603 TBP-1 interacting prot 33.6 2.9E+02 0.0062 25.5 8.3 49 154-202 121-170 (201)
447 PF14193 DUF4315: Domain of un 33.4 1.3E+02 0.0028 24.1 5.5 18 149-166 8-25 (83)
448 PF12958 DUF3847: Protein of u 33.4 93 0.002 25.1 4.7 32 159-190 4-35 (86)
449 KOG0614 cGMP-dependent protein 33.2 1.5E+02 0.0032 32.0 7.2 50 156-205 24-73 (732)
450 PRK14162 heat shock protein Gr 33.2 99 0.0022 28.4 5.5 29 180-208 49-77 (194)
451 cd07676 F-BAR_FBP17 The F-BAR 33.1 4.2E+02 0.0092 25.0 13.3 45 171-215 115-159 (253)
452 PLN02943 aminoacyl-tRNA ligase 33.0 1.5E+02 0.0033 33.3 7.8 26 148-173 888-913 (958)
453 PF07061 Swi5: Swi5; InterPro 32.9 2.5E+02 0.0055 22.3 8.1 31 178-208 33-63 (83)
454 cd03407 Band_7_4 A subgroup of 32.8 3.5E+02 0.0075 25.2 9.2 59 171-230 184-253 (262)
455 PF09798 LCD1: DNA damage chec 32.8 1.3E+02 0.0027 32.8 6.9 15 187-201 36-50 (654)
456 PRK03598 putative efflux pump 32.7 3.8E+02 0.0081 25.5 9.6 100 115-218 108-212 (331)
457 PF06785 UPF0242: Uncharacteri 32.7 5.4E+02 0.012 26.1 12.3 47 209-255 188-236 (401)
458 smart00435 TOPEUc DNA Topoisom 32.6 2.5E+02 0.0053 28.7 8.5 37 192-228 344-382 (391)
459 TIGR01010 BexC_CtrB_KpsE polys 32.6 3.4E+02 0.0074 26.3 9.5 29 176-204 277-305 (362)
460 TIGR00634 recN DNA repair prot 32.6 2.2E+02 0.0048 29.7 8.6 12 192-203 210-221 (563)
461 KOG2751 Beclin-like protein [S 32.4 5E+02 0.011 27.0 10.7 53 152-204 186-238 (447)
462 PRK10476 multidrug resistance 32.4 4.6E+02 0.0099 25.1 11.4 88 114-208 86-183 (346)
463 PF11577 NEMO: NF-kappa-B esse 32.3 2.4E+02 0.0051 21.8 7.8 45 154-208 11-55 (68)
464 PF09304 Cortex-I_coil: Cortex 32.3 3.1E+02 0.0067 23.2 8.6 90 117-206 5-94 (107)
465 KOG0018 Structural maintenance 32.3 4E+02 0.0087 30.8 10.7 48 158-205 851-898 (1141)
466 PF02646 RmuC: RmuC family; I 32.1 3.2E+02 0.0068 26.4 9.0 61 145-208 2-65 (304)
467 PF07851 TMPIT: TMPIT-like pro 32.1 4.7E+02 0.01 26.1 10.3 80 141-220 10-97 (330)
468 PRK09173 F0F1 ATP synthase sub 32.1 3.3E+02 0.0071 23.4 10.9 70 95-187 8-78 (159)
469 PF01025 GrpE: GrpE; InterPro 32.1 59 0.0013 27.9 3.7 42 169-210 10-51 (165)
470 PF02841 GBP_C: Guanylate-bind 32.0 4.6E+02 0.0099 25.0 11.2 99 109-207 178-277 (297)
471 PF01025 GrpE: GrpE; InterPro 32.0 54 0.0012 28.1 3.4 46 148-193 10-55 (165)
472 smart00806 AIP3 Actin interact 31.9 1.5E+02 0.0032 30.6 6.9 65 144-210 212-276 (426)
473 PRK02195 V-type ATP synthase s 31.8 1.9E+02 0.0041 26.5 7.1 47 162-208 9-55 (201)
474 PRK00736 hypothetical protein; 31.8 2.3E+02 0.005 21.5 7.4 49 147-198 3-51 (68)
475 COG5374 Uncharacterized conser 31.7 1.5E+02 0.0033 27.3 6.3 58 156-213 125-189 (192)
476 PRK14157 heat shock protein Gr 31.7 99 0.0022 29.2 5.3 34 154-187 82-115 (227)
477 COG2841 Uncharacterized protei 31.6 82 0.0018 24.8 3.9 41 178-218 4-45 (72)
478 PRK10476 multidrug resistance 31.5 3.9E+02 0.0085 25.6 9.6 66 145-210 82-147 (346)
479 KOG2189 Vacuolar H+-ATPase V0 31.5 2.3E+02 0.0051 31.5 8.6 100 107-219 49-150 (829)
480 cd07646 I-BAR_IMD_IRSp53 Inver 31.4 3.9E+02 0.0086 25.4 9.2 67 144-210 102-174 (232)
481 COG1422 Predicted membrane pro 31.4 2.9E+02 0.0063 25.7 8.2 72 99-185 50-121 (201)
482 PF14282 FlxA: FlxA-like prote 31.4 2.9E+02 0.0063 22.6 7.8 54 155-208 18-75 (106)
483 PRK05729 valS valyl-tRNA synth 31.4 1.4E+02 0.003 33.1 7.1 58 148-205 810-874 (874)
484 COG0576 GrpE Molecular chapero 31.3 1.2E+02 0.0026 27.6 5.7 38 150-187 37-74 (193)
485 PF09403 FadA: Adhesion protei 31.3 3.4E+02 0.0074 23.3 10.6 68 142-209 27-107 (126)
486 KOG1003 Actin filament-coating 30.9 4.5E+02 0.0097 24.6 9.7 88 114-208 109-196 (205)
487 PRK14011 prefoldin subunit alp 30.8 1.6E+02 0.0035 25.7 6.2 67 169-241 2-68 (144)
488 PF01920 Prefoldin_2: Prefoldi 30.8 2.6E+02 0.0056 21.8 8.5 77 106-182 14-102 (106)
489 TIGR02209 ftsL_broad cell divi 30.8 2.4E+02 0.0052 21.4 9.0 61 98-198 5-65 (85)
490 PF10883 DUF2681: Protein of u 30.8 1.7E+02 0.0037 23.7 5.8 38 151-188 25-62 (87)
491 PRK14156 heat shock protein Gr 30.8 1.1E+02 0.0023 27.8 5.2 35 154-188 32-66 (177)
492 COG1792 MreC Cell shape-determ 30.6 2.6E+02 0.0057 26.9 8.2 103 35-165 2-106 (284)
493 cd07648 F-BAR_FCHO The F-BAR ( 30.5 4.4E+02 0.0096 24.4 10.7 101 105-206 79-179 (261)
494 PF15066 CAGE1: Cancer-associa 30.5 5.5E+02 0.012 27.1 10.7 99 111-209 415-517 (527)
495 COG3352 FlaC Putative archaeal 30.4 4E+02 0.0086 24.0 8.5 65 148-212 71-136 (157)
496 PRK14139 heat shock protein Gr 30.4 1.2E+02 0.0026 27.7 5.5 40 171-210 33-72 (185)
497 cd07676 F-BAR_FBP17 The F-BAR 30.2 3.7E+02 0.0079 25.4 8.9 88 111-205 125-214 (253)
498 PRK00409 recombination and DNA 30.1 3.5E+02 0.0076 29.8 9.9 67 141-207 512-578 (782)
499 KOG4005 Transcription factor X 30.1 3E+02 0.0065 26.6 8.1 57 152-208 86-142 (292)
500 PF15294 Leu_zip: Leucine zipp 29.7 2.1E+02 0.0045 27.9 7.2 48 144-191 127-174 (278)
No 1
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=100.00 E-value=3.7e-44 Score=325.62 Aligned_cols=208 Identities=32% Similarity=0.422 Sum_probs=166.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHcchh-HHHHHH-HHHHHHhhcc-chhhHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCC
Q 021727 1 MQQLLFTVMFSEMALIMVLLFKTP-LRKLLI-MSLDRVKRGR-GPVVVKTVAGTVLVMLISSVYNIMMIQKRWIDDEGAV 77 (308)
Q Consensus 1 m~sLVF~lL~~Emav~lLLvLPlP-~R~~~i-~~l~~~~~~r-~~~~~~iv~~~l~vLFlDSirrm~K~~~~~~~~~~~~ 77 (308)
||++||++||+||+++++||+|+| .||+.+ +.......++ +.+++.+++++++++|+|||+|+++|..++....+..
T Consensus 1 ~~tlvf~iL~~Eial~~iL~Lpip~r~~~~~~~~~~~~~~~~~~~~~i~~~~~villlfiDsvr~i~~~~~~~~~~~n~~ 80 (216)
T KOG1962|consen 1 YWTLVFTILYAEIALFLILLLPIPPRRRRKIFKDRLKSGLAPQVLKTIATTMIVILLLFIDSVRRIQKYVSEYGSMANPT 80 (216)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCc
Confidence 799999999999999999999997 455543 3333344444 7899999999999999999999999988753220112
Q ss_pred CCc--hhHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHH
Q 021727 78 VNP--TDQVLLANHLLE--ATLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTT 153 (308)
Q Consensus 78 ~~p--~~qv~arkfy~q--aYISGFsLFL~LVI~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~ 153 (308)
.+| ..+.+|..|+.| .|||||+|||||||+|+|++|++++.++++ +.++++++.+++..+..+ ...+++.+
T Consensus 81 ~~~~a~~~~~~~l~raqrn~YisGf~LFL~lvI~R~~~ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~----~~~~~~~~ 155 (216)
T KOG1962|consen 81 DQPLARTHLLEALFRAQRNLYISGFVLFLSLVIRRLHTLLRELATLRAN-EKAMKENEALKKQLENSS----KLEEENDK 155 (216)
T ss_pred cchHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhhhccc----chhhhHHH
Confidence 333 456667755555 599999999999999999999999999996 556666554443222111 14456667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhcccc
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWR 213 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~ 213 (308)
+.++.++|++|++++++++++++++.++|+||++++++|||||+|||++||++++.++++
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~~~k 215 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESGGKK 215 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhccCCC
Confidence 888999999999999999999999999999999999999999999999999999977654
No 2
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=100.00 E-value=4.7e-40 Score=292.62 Aligned_cols=180 Identities=28% Similarity=0.461 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcchh--HHHHHHHHHHH-HhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCC
Q 021727 2 QQLLFTVMFSEMALIMVLLFKTP--LRKLLIMSLDR-VKRGRGPVVVKTVAGTVLVMLISSVYNIMMIQKRWIDDEGAVV 78 (308)
Q Consensus 2 ~sLVF~lL~~Emav~lLLvLPlP--~R~~~i~~l~~-~~~~r~~~~~~iv~~~l~vLFlDSirrm~K~~~~~~~~~~~~~ 78 (308)
|++||++|++||+++++||+|+| +|+.++++++. ++.+++++++++++++++++|+|||++|+||+.+..+..+++.
T Consensus 5 ~~lvf~~L~~Ei~~~~lL~lPlp~~~R~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lf~ds~~~~~k~~~~~~~~~~~~~ 84 (192)
T PF05529_consen 5 WSLVFGLLYAEIAVLLLLVLPLPSPIRRKIFKFLDKSFFSGKFKTVFKILLAILLLLFLDSIRRMYKYSSEYEEAKDDHP 84 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCC
Confidence 79999999999999999999995 88888888875 4456699999999999999999999999999887643201122
Q ss_pred --C-chhHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHH
Q 021727 79 --N-PTDQVLLANHLLE--ATLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTT 153 (308)
Q Consensus 79 --~-p~~qv~arkfy~q--aYISGFsLFL~LVI~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~ 153 (308)
+ ..+|++|++||+| +|||||+|||++||+|+++++.+++.++++.+++++|+++.++..++ ..
T Consensus 85 ~~~~~~~~~~~~~fraQRN~YIsGf~LfL~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~------~~------ 152 (192)
T PF05529_consen 85 NPDRTEDQVLAKKFRAQRNMYISGFALFLSLVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEK------LL------ 152 (192)
T ss_pred CccchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh------hh------
Confidence 2 4688899999999 89999999999999999999999999999999999998866542111 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHH
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYD 194 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYD 194 (308)
+++.++++.|+++++++++++++|+++||||++|+++|||
T Consensus 153 -~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 153 -KEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred -hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 2233444455555555555677789999999999999998
No 3
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=9.8e-30 Score=224.71 Aligned_cols=175 Identities=21% Similarity=0.285 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcchh--HHHHHHHHHHHHhh-ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCC
Q 021727 2 QQLLFTVMFSEMALIMVLLFKTP--LRKLLIMSLDRVKR-GRGPVVVKTVAGTVLVMLISSVYNIMMIQKRWIDDEGAVV 78 (308)
Q Consensus 2 ~sLVF~lL~~Emav~lLLvLPlP--~R~~~i~~l~~~~~-~r~~~~~~iv~~~l~vLFlDSirrm~K~~~~~~~~~~~~~ 78 (308)
|++||.+|++||++|++|+||+| .|+++++.++.++. ++++++++++++++++||+|||+|+++++.+....++...
T Consensus 5 ~~lvfslL~vEm~~f~il~LPlp~r~RR~l~~~~~~~~~~~~~k~il~i~~~~IllLFiDS~~Rv~rv~~~~nl~~a~~n 84 (192)
T COG5374 5 YTLVFSLLVVEMVMFFILVLPLPKRLRRSLMKLYSTSKVYRGFKHILKITFIFILLLFIDSWKRVYRVSKEANLYSASIN 84 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhcccccc
Confidence 79999999999999999999999 67888888887665 4499999999999999999999999999887643212122
Q ss_pred C---chhHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHH
Q 021727 79 N---PTDQVLLANHLLE--ATLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTT 153 (308)
Q Consensus 79 ~---p~~qv~arkfy~q--aYISGFsLFL~LVI~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~ 153 (308)
+ .+.++++|+||+| ||||||+|||.+|+.|+++++.++...++... ++.|.
T Consensus 85 ~~~~~~i~~las~fy~qrnmyl~g~~L~l~~~v~~~~~~v~~ml~~~~~~~--------------~k~D~---------- 140 (192)
T COG5374 85 NYAVTRIAVLASRFYAQRNMYLSGSALFLSIVVMRVMSIVEEMLEENAKKG--------------GKIDK---------- 140 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--------------cchhh----------
Confidence 2 2468999999999 89999999999999999999999998886222 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhcc
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLD 211 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d 211 (308)
.+.+..+||++ +.++..+++.|+|+-+++.++||. ++++.++.+++.
T Consensus 141 ~eA~~t~lk~~-------~~~~~~~le~Lqkn~~~~~k~~d~----~ne~~~~v~~e~ 187 (192)
T COG5374 141 MEADSTDLKAR-------LRKAQILLEGLQKNQEELFKLLDK----YNELREQVQKES 187 (192)
T ss_pred hhcchHHHHHH-------HhhhhHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHH
Confidence 12223334443 445556789999988777777654 455565555443
No 4
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=98.61 E-value=2.6e-06 Score=78.50 Aligned_cols=156 Identities=23% Similarity=0.303 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021727 45 VKTVAGTVLVMLISSVYNIMMIQKRWIDDEGAVVNPTDQVLLANHLLE-ATLMGASLFLAFMIDRLHHYIRELRIRRKTM 123 (308)
Q Consensus 45 ~~iv~~~l~vLFlDSirrm~K~~~~~~~~~~~~~~p~~qv~arkfy~q-aYISGFsLFL~LVI~Rl~sLI~eLa~le~~~ 123 (308)
.++++++++++++--+-.+++++...... +...||.+++.++.++.. +|..++-||++=++==+.-+|.++..+-..+
T Consensus 45 ~~~i~~~~~villlfiDsvr~i~~~~~~~-~~~~n~~~~~~a~~~~~~~l~raqrn~YisGf~LFL~lvI~R~~~ll~~l 123 (216)
T KOG1962|consen 45 LKTIATTMIVILLLFIDSVRRIQKYVSEY-GSMANPTDQPLARTHLLEALFRAQRNLYISGFVLFLSLVIRRLHTLLREL 123 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hcccCCccchHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45667888899999999999999987666 667789999999988888 7999999999866666777778888877776
Q ss_pred HHHHhcccccccccccchHHHHHhHHHh-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 021727 124 EAIKNQSRGFEDGKAASSEEIKALEDQM-TTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQN 202 (308)
Q Consensus 124 ealkKQa~~a~~~~~~~~~e~~~~~~e~-~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~k 202 (308)
..++.+ +.+.+ .....+. ..++ ..+.+|..+++.+++.+++|+++...+++..+++.+.+.+--+++.+||+.
T Consensus 124 ~~l~~~-~~~~~----~~~~lk~-~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Eydr 197 (216)
T KOG1962|consen 124 ATLRAN-EKAMK----ENEALKK-QLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDR 197 (216)
T ss_pred HHHHhh-HHHHH----HHHHHHH-hhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 666654 11111 0111111 1111 225677888999999999999999999999999999999999999999999
Q ss_pred HHHhH
Q 021727 203 LRNQL 207 (308)
Q Consensus 203 Lq~~l 207 (308)
|.++-
T Consensus 198 Llee~ 202 (216)
T KOG1962|consen 198 LLEEY 202 (216)
T ss_pred HHHHH
Confidence 87553
No 5
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.24 E-value=0.19 Score=43.16 Aligned_cols=90 Identities=23% Similarity=0.337 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 021727 105 MIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRK 184 (308)
Q Consensus 105 VI~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKK 184 (308)
||+-++.||.....-....+.+..+ ......+++.+...++.|+.+++.++.++..++.+..++++
T Consensus 36 vin~i~~Ll~~~~r~~~~~e~l~~~--------------~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~ 101 (151)
T PF11559_consen 36 VINCIYDLLQQRDRDMEQREDLSDK--------------LRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQK 101 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777666666655555332 23344456666777777777777777777777777777777
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 185 QSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 185 Qae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+...+..---...+|.++++..++
T Consensus 102 ~~~~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 102 QLKSLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766554
No 6
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.15 E-value=0.11 Score=52.33 Aligned_cols=116 Identities=20% Similarity=0.281 Sum_probs=82.3
Q ss_pred HHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Q 021727 93 ATLMGASLFLAFMIDR-LHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKE 171 (308)
Q Consensus 93 aYISGFsLFL~LVI~R-l~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~ke 171 (308)
|-||..+|-..|+++| +.+=|.++.....++++++.|.+.++..+..-..|-++...|.++.++|-+..+.++.+..++
T Consensus 52 ~liSA~tLailf~~~~~lr~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n 131 (499)
T COG4372 52 MLISAATLAILFLLNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQN 131 (499)
T ss_pred chhhHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778877777776 556677888888888888887665554221111111223335555666777788888888889
Q ss_pred HHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 172 ANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 172 l~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+.++..++.-+.+|+.+++.+.-.|.+++.+|..+.+
T Consensus 132 ~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~q 168 (499)
T COG4372 132 LAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQ 168 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888888888776655444
No 7
>PRK11637 AmiB activator; Provisional
Probab=96.08 E-value=0.085 Score=52.69 Aligned_cols=63 Identities=8% Similarity=-0.032 Sum_probs=41.4
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 146 ALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 146 ~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
....+++.+..+++.+..++...+.++...+.+++.++++.+.++.+.+.+.+..........
T Consensus 72 ~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y 134 (428)
T PRK11637 72 SLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAF 134 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666667777777777777777777777777777777777777666665444433
No 8
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.63 E-value=0.024 Score=40.34 Aligned_cols=34 Identities=35% Similarity=0.510 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhh
Q 021727 176 ETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (308)
Q Consensus 176 e~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~ 209 (308)
|.|-++||.+.+.|..+||+|..|+++|+.++..
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999988764
No 9
>PRK09039 hypothetical protein; Validated
Probab=94.26 E-value=2.9 Score=41.13 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=28.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHH
Q 021727 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLL 197 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~ 197 (308)
++..|+.+|+.|+.++...+.+|..++......+.|.+.+..+-+..+
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666665555555666666666666665554
No 10
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.25 E-value=0.7 Score=42.38 Aligned_cols=77 Identities=12% Similarity=0.181 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHh
Q 021727 111 HYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAA---ETNAVALRKQSE 187 (308)
Q Consensus 111 sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~ka---e~d~eaLKKQae 187 (308)
.++..+..++.+...+..+...++. ......+.+..|..++.+|+.+++...+.+..+ +.+++-||.=+.
T Consensus 5 dL~~~v~dL~~~n~~L~~en~kL~~-------~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~ 77 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAKLQR-------SVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAK 77 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443332222 223333444444444444444444444444333 334444443333
Q ss_pred hHHHHHH
Q 021727 188 GFLFEYD 194 (308)
Q Consensus 188 ~L~kEYD 194 (308)
.++.+|.
T Consensus 78 ~lEE~~~ 84 (193)
T PF14662_consen 78 SLEEENR 84 (193)
T ss_pred HHHHHHH
Confidence 3333333
No 11
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.14 E-value=0.37 Score=43.34 Aligned_cols=63 Identities=32% Similarity=0.399 Sum_probs=52.1
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 144 IKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 144 ~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
......++..+..++..|+.+++++.+.+.....++.+|.-|..-++....+|.+||..|-+.
T Consensus 118 l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 118 LAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777788888889999999888888888889999999999999999999998886443
No 12
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.13 E-value=1.6 Score=41.30 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 021727 105 MIDRLHHYIRELRIRRKTMEAIKNQSRGFE 134 (308)
Q Consensus 105 VI~Rl~sLI~eLa~le~~~ealkKQa~~a~ 134 (308)
.=.|+.+||.....+++....+..+.....
T Consensus 9 LNdRla~YIekVr~LE~~N~~Le~~i~~~~ 38 (312)
T PF00038_consen 9 LNDRLASYIEKVRFLEQENKRLESEIEELR 38 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 446788888888888888777777665443
No 13
>PRK11637 AmiB activator; Provisional
Probab=93.41 E-value=0.74 Score=46.05 Aligned_cols=56 Identities=14% Similarity=0.168 Sum_probs=28.9
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHH
Q 021727 146 ALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQ 201 (308)
Q Consensus 146 ~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~ 201 (308)
....++..+..++..++.+++..+.++...+.+++.++++.+.....+.+++....
T Consensus 79 ~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y 134 (428)
T PRK11637 79 KQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAF 134 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555555555555555555555555444443
No 14
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.38 E-value=0.3 Score=51.02 Aligned_cols=66 Identities=26% Similarity=0.299 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH---HHHHHHHHHHHHHHHHhHhhccccccccC
Q 021727 153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF---LFEYDRLLEENQNLRNQLQSLDWRLSHSD 218 (308)
Q Consensus 153 ~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L---~kEYDRL~eE~~kLq~~l~~~d~~~s~~~ 218 (308)
...++++.|+.|++.++.|+++.+.+.+.||+|.++. ..++.|..-|.++|+..+.......++-+
T Consensus 291 ~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~ 359 (581)
T KOG0995|consen 291 HMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLS 359 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788999999999999999999999999999987 67888899999888888876666554443
No 15
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=93.07 E-value=0.73 Score=40.58 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 021727 154 LKLKLKDLESELETKSKEANAAE---TNAVALRKQSEGFLFEYDRLLEENQNL 203 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae---~d~eaLKKQae~L~kEYDRL~eE~~kL 203 (308)
..++.+.++.+|+..++.|+.-+ .|.+.|++|++.++.+|+.-.++|+.-
T Consensus 25 ~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~ 77 (155)
T PF06810_consen 25 VKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAK 77 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777776665554 499999999999999999888887753
No 16
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.72 E-value=14 Score=38.47 Aligned_cols=58 Identities=28% Similarity=0.369 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH---HHHHHHHHHHHHHHHHhHhhcccc
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGF---LFEYDRLLEENQNLRNQLQSLDWR 213 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L---~kEYDRL~eE~~kLq~~l~~~d~~ 213 (308)
..+++|+.+++.++.+++..+.+.+.|++|.++. ..++.....|.++|-..+......
T Consensus 330 g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~ 390 (622)
T COG5185 330 GKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQ 390 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3578999999999999999999999999998876 567777777878887777755544
No 17
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.61 E-value=6.8 Score=34.52 Aligned_cols=54 Identities=28% Similarity=0.361 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727 151 MTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (308)
Q Consensus 151 ~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq 204 (308)
+..++...+++.+++....+++...+..++.++.+.+.+..+|+++.+..++++
T Consensus 132 l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 132 LDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQ 185 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555554444444555666666666666666666655544444
No 18
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.10 E-value=3 Score=38.29 Aligned_cols=25 Identities=4% Similarity=0.054 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhccccccc
Q 021727 111 HYIRELRIRRKTMEAIKNQSRGFED 135 (308)
Q Consensus 111 sLI~eLa~le~~~ealkKQa~~a~~ 135 (308)
++=..-+++.+..+.+.+|+.+++.
T Consensus 33 ~~ee~na~L~~e~~~L~~q~~s~Qq 57 (193)
T PF14662_consen 33 TAEEGNAQLAEEITDLRKQLKSLQQ 57 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666777777777776654
No 19
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=91.39 E-value=2.8 Score=43.20 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHH
Q 021727 108 RLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAA-ETNAVALRKQS 186 (308)
Q Consensus 108 Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~ka-e~d~eaLKKQa 186 (308)
.+-+++-++..++.+++.+.+| |+.+++|+++|++.....+..+..+ +.....+.+|.
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~---------------------N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~ 118 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISE---------------------NEALKAENERLQKREQSIDQQIQQAVQSETQELTKEI 118 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHH
Confidence 3445555666666665555543 2333444444444444444433333 23345566677
Q ss_pred hhHHHHHHHHHHHHHHHHHhHh
Q 021727 187 EGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 187 e~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+.++.+-.++....+.|+.+++
T Consensus 119 ~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 119 EQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777777777777764
No 20
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=91.35 E-value=3.3 Score=42.16 Aligned_cols=94 Identities=26% Similarity=0.302 Sum_probs=54.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 021727 90 LLEATLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKS 169 (308)
Q Consensus 90 y~qaYISGFsLFL~LVI~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~ 169 (308)
+...=++|+.++.++. ....-.++-..+.+.++..+ +.....++-.+|..+++++++++...+
T Consensus 17 ~~~~~l~~~~~~~s~s---~~a~~~~l~q~q~ei~~~~~--------------~i~~~~~~~~kL~~~lk~~e~~i~~~~ 79 (420)
T COG4942 17 LLASLLSAAVLAAAFS---AAADDKQLKQIQKEIAALEK--------------KIREQQDQRAKLEKQLKSLETEIASLE 79 (420)
T ss_pred HHHHHHHhcccccchh---HHhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666776666 33332444445544444432 122233344456666777777777777
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHHHHHHH
Q 021727 170 KEANAAETNAVALRKQSEGFLFEYDRLLEEN 200 (308)
Q Consensus 170 kel~kae~d~eaLKKQae~L~kEYDRL~eE~ 200 (308)
.++...+.+++.+.++.+.+...-..|..++
T Consensus 80 ~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 80 AQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 7777777777777777777766666666555
No 21
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.22 E-value=1.9 Score=39.82 Aligned_cols=28 Identities=11% Similarity=-0.089 Sum_probs=13.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq~ 205 (308)
+.+.|++|.+.++++-|.|..+++.+++
T Consensus 140 ~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 140 ENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 22
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.18 E-value=5.2 Score=37.24 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=36.6
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHH
Q 021727 143 EIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLE 198 (308)
Q Consensus 143 e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~e 198 (308)
+...+..++..+..+++.|+...+..++.+...+.+++.|+.|.+++..-...+..
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666667777777777777777777777777777777776655544444
No 23
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.96 E-value=2.5 Score=41.02 Aligned_cols=8 Identities=13% Similarity=0.027 Sum_probs=4.1
Q ss_pred HHHHHHHh
Q 021727 59 SVYNIMMI 66 (308)
Q Consensus 59 Sirrm~K~ 66 (308)
+.+++.++
T Consensus 76 ~c~EL~~~ 83 (325)
T PF08317_consen 76 SCRELKKY 83 (325)
T ss_pred HHHHHHHH
Confidence 55555444
No 24
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.88 E-value=7.1 Score=34.43 Aligned_cols=57 Identities=19% Similarity=0.320 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 152 TTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 152 ~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+...++++.++...+...++.....++....+.+++.+..++.++.++++.+++.++
T Consensus 126 ~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (191)
T PF04156_consen 126 KSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQ 182 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777776667777778888888888888888887776665
No 25
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.86 E-value=3.1 Score=43.93 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Q 021727 107 DRLHHYIRELRIRRKTMEAIKNQSRGF 133 (308)
Q Consensus 107 ~Rl~sLI~eLa~le~~~ealkKQa~~a 133 (308)
.++..++.++..++.+++.+.++...+
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~ 417 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTI 417 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 566777777777888777777765543
No 26
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.60 E-value=2.3 Score=40.30 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 177 TNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 177 ~d~eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
.+++++|.+...+..|-.+|+++.++++++
T Consensus 96 ~E~~~ak~r~~~le~el~~l~~~~~~l~~~ 125 (239)
T COG1579 96 IEIQIAKERINSLEDELAELMEEIEKLEKE 125 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 27
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=90.59 E-value=8.1 Score=33.79 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccc
Q 021727 107 DRLHHYIRELRIRRKTMEAIKNQSRGFED 135 (308)
Q Consensus 107 ~Rl~sLI~eLa~le~~~ealkKQa~~a~~ 135 (308)
+++-++=++|...+++.+.+..+++++++
T Consensus 24 ~~v~~LEreLe~~q~~~e~~~~daEn~k~ 52 (140)
T PF10473_consen 24 DHVESLERELEMSQENKECLILDAENSKA 52 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45566666777777777777666665543
No 28
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.57 E-value=7.4 Score=32.97 Aligned_cols=55 Identities=25% Similarity=0.352 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhh
Q 021727 155 KLKLKDLESELETKSKEANAAE----TNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (308)
Q Consensus 155 ~~evekLk~eLk~k~kel~kae----~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~ 209 (308)
..++..|+.+.+.....+...+ .....|.++.+.+..-++.|.+.|.-|.+|++.
T Consensus 72 ~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 72 QQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444443332 234567778888888888888888778888764
No 29
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=90.57 E-value=9.8 Score=34.69 Aligned_cols=12 Identities=0% Similarity=0.022 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHh
Q 021727 55 MLISSVYNIMMI 66 (308)
Q Consensus 55 LFlDSirrm~K~ 66 (308)
.|++.+..+.+.
T Consensus 51 ~f~~l~e~v~~l 62 (190)
T PF05266_consen 51 TFANLAEKVKKL 62 (190)
T ss_pred HHHHHHHHHHHc
Confidence 455555544443
No 30
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.44 E-value=3.9 Score=37.36 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 021727 155 KLKLKDLESELET 167 (308)
Q Consensus 155 ~~evekLk~eLk~ 167 (308)
..++++|+.++..
T Consensus 68 ~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 68 EEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 31
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.19 E-value=4.1 Score=39.18 Aligned_cols=41 Identities=15% Similarity=0.388 Sum_probs=19.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH
Q 021727 149 DQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (308)
Q Consensus 149 ~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L 189 (308)
.+++.+..+++++..++++.++++.+.+.+++.++++++.+
T Consensus 52 ~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555554444444444444444444
No 32
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.16 E-value=3.4 Score=38.10 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=9.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHh
Q 021727 184 KQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 184 KQae~L~kEYDRL~eE~~kLq~~ 206 (308)
++.++|..|+++|.++++.++++
T Consensus 132 ~~~~~L~~~n~~L~~~l~~~~~~ 154 (206)
T PRK10884 132 SVINGLKEENQKLKNQLIVAQKK 154 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444433
No 33
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.01 E-value=4.2 Score=39.60 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=2.7
Q ss_pred ccccCccceee
Q 021727 214 LSHSDFRTVYW 224 (308)
Q Consensus 214 ~s~~~~k~~~~ 224 (308)
+-+.++.+|=|
T Consensus 158 LGrl~~~~V~W 168 (314)
T PF04111_consen 158 LGRLPNVPVEW 168 (314)
T ss_dssp E--BTTB---H
T ss_pred eccCCCCCCCh
Confidence 33444444555
No 34
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.99 E-value=3.6 Score=44.36 Aligned_cols=64 Identities=25% Similarity=0.300 Sum_probs=43.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HhhHHHHHHHHHHHHHHHHHhHhhccccc
Q 021727 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQ-SEGFLFEYDRLLEENQNLRNQLQSLDWRL 214 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQ-ae~L~kEYDRL~eE~~kLq~~l~~~d~~~ 214 (308)
...++..|+++|+.||+.+++++...|.++..|+++ -| -++|=+-|+....-+|++-+.-+..+
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e-~~~~~e~L~~aL~amqdk~~~LE~sL 610 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKE-SEKDTEVLMSALSAMQDKNQHLENSL 610 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566778888888888888888888888888876 33 44556666666666666655555544
No 35
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.65 E-value=3 Score=37.48 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 021727 151 MTTLKLKLKDLESELETKSKEA 172 (308)
Q Consensus 151 ~~~l~~evekLk~eLk~k~kel 172 (308)
+..+..++..|+.+++..+.++
T Consensus 118 l~~l~~~~~~L~~~~~~l~~~l 139 (194)
T PF08614_consen 118 LAELEAELAQLEEKIKDLEEEL 139 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 36
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.38 E-value=6.2 Score=34.51 Aligned_cols=41 Identities=32% Similarity=0.338 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH
Q 021727 153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEY 193 (308)
Q Consensus 153 ~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEY 193 (308)
..+.+++.|+.++.....++...+.++.++++.-+++.++-
T Consensus 49 n~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l 89 (140)
T PF10473_consen 49 NSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL 89 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555444444333
No 37
>PRK12704 phosphodiesterase; Provisional
Probab=89.37 E-value=9.8 Score=39.64 Aligned_cols=28 Identities=21% Similarity=0.167 Sum_probs=12.1
Q ss_pred HHHhhhHHHHHHHHHhhHHHHHHHHHHH
Q 021727 172 ANAAETNAVALRKQSEGFLFEYDRLLEE 199 (308)
Q Consensus 172 l~kae~d~eaLKKQae~L~kEYDRL~eE 199 (308)
|...+++++..+++.+...++|+++.++
T Consensus 112 L~~re~~Le~re~eLe~~~~~~~~~~~~ 139 (520)
T PRK12704 112 LEKKEKELEQKQQELEKKEEELEELIEE 139 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444443
No 38
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.24 E-value=3.4 Score=40.23 Aligned_cols=8 Identities=25% Similarity=0.497 Sum_probs=3.8
Q ss_pred HHHHHHhh
Q 021727 258 LLVLAAVS 265 (308)
Q Consensus 258 ~~~~~~~~ 265 (308)
.|+|..+.
T Consensus 179 ~LLL~~la 186 (314)
T PF04111_consen 179 ALLLQTLA 186 (314)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44554443
No 39
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=88.89 E-value=3.5 Score=44.35 Aligned_cols=42 Identities=24% Similarity=0.243 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhcccccccc
Q 021727 176 ETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHS 217 (308)
Q Consensus 176 e~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~s~~ 217 (308)
++....|+||.++-.+-.+.|..++.-|+++....+++.+..
T Consensus 593 enk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~ 634 (786)
T PF05483_consen 593 ENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVY 634 (786)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444678888888888888888888888888888877777543
No 40
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.47 E-value=11 Score=32.39 Aligned_cols=48 Identities=17% Similarity=0.282 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHH----HHHHHHHHHHHhH
Q 021727 160 DLESELETKSKEANAAETNAVALRKQSEGFLFEYD----RLLEENQNLRNQL 207 (308)
Q Consensus 160 kLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYD----RL~eE~~kLq~~l 207 (308)
.++.+++.....++..+.++.-++..+.+...-|. |---|+++|++++
T Consensus 98 ~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 98 QLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333443333333444444444444444433333 3333455566554
No 41
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=88.28 E-value=5.8 Score=41.73 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHH
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQ 201 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~ 201 (308)
|.++++.|+.+++..+.+|...+.+.+.|+.|.+.+......+..|++
T Consensus 162 Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~ 209 (546)
T PF07888_consen 162 LEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERE 209 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444434434444444444444444433333333
No 42
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=88.21 E-value=10 Score=34.99 Aligned_cols=16 Identities=19% Similarity=0.136 Sum_probs=6.1
Q ss_pred HHHhhHHHHHHHHHHH
Q 021727 184 KQSEGFLFEYDRLLEE 199 (308)
Q Consensus 184 KQae~L~kEYDRL~eE 199 (308)
++.+....+..+....
T Consensus 119 ~~~~~~~~~~~~~~~~ 134 (302)
T PF10186_consen 119 EQLEELQNELEERKQR 134 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333343344333333
No 43
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=88.04 E-value=7.8 Score=42.26 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhh
Q 021727 163 SELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (308)
Q Consensus 163 ~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~ 209 (308)
.+++....++...+.+++.++++.+.+..++..+..+...++..+..
T Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 362 (1179)
T TIGR02168 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEE 362 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444455555555555555555555555555543
No 44
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=87.94 E-value=8.3 Score=37.46 Aligned_cols=83 Identities=23% Similarity=0.186 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhcccccc-ccCccceeeccccccccccch
Q 021727 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLS-HSDFRTVYWNAEKTASSTYCA 236 (308)
Q Consensus 158 vekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~s-~~~~k~~~~~~~~~~~~~~~~ 236 (308)
-++|..++..++-.+.-.+..+..-|+|.+.|+.|--|+..|.++.|.....+|-.++ .+..-|+|-..- |.+-.|-.
T Consensus 83 rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~-tp~q~~~~ 161 (307)
T PF10481_consen 83 RQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPL-TPSQYYSD 161 (307)
T ss_pred HHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCC-Chhhhhhh
Confidence 3456777777777777778888999999999999999999999999888887776533 334455776433 66655655
Q ss_pred hhhhh
Q 021727 237 AKVLD 241 (308)
Q Consensus 237 ~~~~~ 241 (308)
+|.=+
T Consensus 162 sk~e~ 166 (307)
T PF10481_consen 162 SKYEE 166 (307)
T ss_pred hhHHH
Confidence 55443
No 45
>PHA02562 46 endonuclease subunit; Provisional
Probab=87.67 E-value=6.7 Score=39.94 Aligned_cols=51 Identities=16% Similarity=0.099 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
.++.+.+..+....++....+.+++.|..+.+.+..+..++.++..+++..
T Consensus 344 ~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~ 394 (562)
T PHA02562 344 NKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKT 394 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 333334444444444444445555555555555555555555555544443
No 46
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=87.42 E-value=5.7 Score=38.20 Aligned_cols=51 Identities=29% Similarity=0.423 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 021727 153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNL 203 (308)
Q Consensus 153 ~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kL 203 (308)
.+..+...|+..++.++.|+.++++-+++|++===..-.||++|-+|.+++
T Consensus 187 ~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 187 NLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555544444456777777766543
No 47
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=87.33 E-value=11 Score=36.95 Aligned_cols=95 Identities=19% Similarity=0.162 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHH
Q 021727 113 IRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFE 192 (308)
Q Consensus 113 I~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kE 192 (308)
=-.|..+++++..+|=....+. +|...+.=+++.|+.++++++..+-.+.++......+++.+|.....+..|
T Consensus 83 k~~l~evEekyrkAMv~naQLD-------Nek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e 155 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLD-------NEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREE 155 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666655543322222 233344445666777777777777777777766667788888888888888
Q ss_pred HHHHHHHHHHHHHhHhhccccc
Q 021727 193 YDRLLEENQNLRNQLQSLDWRL 214 (308)
Q Consensus 193 YDRL~eE~~kLq~~l~~~d~~~ 214 (308)
.|.|.++.......++..+..+
T Consensus 156 ~~~Lre~L~~rdeli~khGlVl 177 (302)
T PF09738_consen 156 LDELREQLKQRDELIEKHGLVL 177 (302)
T ss_pred HHHHHHHHHHHHHHHHHCCeee
Confidence 8888888766666666666555
No 48
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=86.80 E-value=7.4 Score=40.96 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHH
Q 021727 153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRL 196 (308)
Q Consensus 153 ~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL 196 (308)
.+..|.+.|+.+.++....+..-+.++.+|..+.....++-+++
T Consensus 203 ~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~l 246 (546)
T PF07888_consen 203 ELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKL 246 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555556666655553333333333
No 49
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.62 E-value=4.7 Score=35.30 Aligned_cols=61 Identities=23% Similarity=0.365 Sum_probs=31.8
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727 144 IKALEDQMTTLKLKLKDLESELETKSKEANAAETNA--VALRKQSEGFLFEYDRLLEENQNLR 204 (308)
Q Consensus 144 ~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~--eaLKKQae~L~kEYDRL~eE~~kLq 204 (308)
...++.++..+++++..|+.+++.++.++....+.. +.|..+.+.+..|-..+.+..+.|+
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555554433322 3455555555555555555555544
No 50
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=86.26 E-value=0.83 Score=44.66 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=14.5
Q ss_pred HHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 021727 93 ATLMGASLFLAFM-IDRLHHYIRELRIRRKTME 124 (308)
Q Consensus 93 aYISGFsLFL~LV-I~Rl~sLI~eLa~le~~~e 124 (308)
+...+-.|+.|.. +...+.+.....-++..++
T Consensus 192 ~S~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~ 224 (344)
T PF12777_consen 192 ASKAAGSLCKWVRAMVKYYEVNKEVEPKRQKLE 224 (344)
T ss_dssp H-TTHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4555566666632 3334444444444444333
No 51
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.12 E-value=17 Score=34.68 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=18.5
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021727 146 ALEDQMTTLKLKLKDLESELETKSKEANAAE 176 (308)
Q Consensus 146 ~~~~e~~~l~~evekLk~eLk~k~kel~kae 176 (308)
.+.+++.++.++..+|+.|++..++.+.+.+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666667777776666555444
No 52
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.01 E-value=9 Score=37.45 Aligned_cols=32 Identities=9% Similarity=0.200 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 177 TNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 177 ~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
++++.++.|.+.+...-....++.+.++.+++
T Consensus 225 ~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~ 256 (312)
T smart00787 225 KKLEELEEELQELESKIEDLTNKKSELNTEIA 256 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443
No 53
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=85.85 E-value=22 Score=33.63 Aligned_cols=26 Identities=12% Similarity=0.266 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021727 104 FMIDRLHHYIRELRIRRKTMEAIKNQ 129 (308)
Q Consensus 104 LVI~Rl~sLI~eLa~le~~~ealkKQ 129 (308)
=.|.||..|=.+...++.....+...
T Consensus 15 ~YIekVr~LE~~N~~Le~~i~~~~~~ 40 (312)
T PF00038_consen 15 SYIEKVRFLEQENKRLESEIEELREK 40 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 35778888888888888777766554
No 54
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=85.47 E-value=7.5 Score=43.97 Aligned_cols=39 Identities=31% Similarity=0.280 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 021727 164 ELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQN 202 (308)
Q Consensus 164 eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~k 202 (308)
+++....++...+..++.++.+...+..+|.++.++...
T Consensus 440 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (1163)
T COG1196 440 ELEELNEELEELEEQLEELRDRLKELERELAELQEELQR 478 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444445555555544444433
No 55
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=85.44 E-value=6.6 Score=34.09 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=10.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 021727 150 QMTTLKLKLKDLESELETKSKEA 172 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~k~kel 172 (308)
+|..|..++..|+.+++.....+
T Consensus 36 EI~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 56
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=85.24 E-value=3.3 Score=41.18 Aligned_cols=56 Identities=18% Similarity=0.105 Sum_probs=42.4
Q ss_pred hHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhhHHHHHHHH
Q 021727 141 SEEIKALEDQMTTLKLKLKDLESELETKSKEANA--AETNAVALRKQSEGFLFEYDRL 196 (308)
Q Consensus 141 ~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~k--ae~d~eaLKKQae~L~kEYDRL 196 (308)
.+|.-.+..||.+|++|+++|+.|++..+.+..+ ...+.+++..|++.+.+--|+.
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk~ 88 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNKM 88 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4566678889999999999999999988877765 3455666777777777777764
No 57
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=84.82 E-value=13 Score=39.14 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 021727 104 FMIDRLHHYIRELRIRRKTMEAIKNQSRGF 133 (308)
Q Consensus 104 LVI~Rl~sLI~eLa~le~~~ealkKQa~~a 133 (308)
-.=+|+..||....-|+++...|..+..-+
T Consensus 46 ~LNDRLA~YIekVR~LEaqN~~L~~di~~l 75 (546)
T KOG0977|consen 46 ELNDRLAVYIEKVRFLEAQNRKLEHDINLL 75 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888888888887765533
No 58
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=84.65 E-value=4.9 Score=35.18 Aligned_cols=63 Identities=25% Similarity=0.385 Sum_probs=52.9
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhHhh
Q 021727 147 LEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQS--EGFLFEYDRLLEENQNLRNQLQS 209 (308)
Q Consensus 147 ~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQa--e~L~kEYDRL~eE~~kLq~~l~~ 209 (308)
..+++..+..++.+|+.++...+.+.+..++++..|.++- +.+...-..|.+|...++.+++.
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888899999999999999888888888888886 66788888888888888888774
No 59
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=84.62 E-value=9.3 Score=29.66 Aligned_cols=19 Identities=26% Similarity=0.287 Sum_probs=8.3
Q ss_pred HHHHHHHHHhhHHHHHHHH
Q 021727 178 NAVALRKQSEGFLFEYDRL 196 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL 196 (308)
++..++++.+....+.+.|
T Consensus 48 ~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 48 QIKELKKKLEELEKELESL 66 (74)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 60
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=84.43 E-value=28 Score=32.25 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 153 ~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
....++..|+..++........++..+..|.++.+.+..+.+...++|..++..++
T Consensus 173 ~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 173 EYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888888777777778888888888888888888888888887777764
No 61
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=84.34 E-value=21 Score=32.58 Aligned_cols=20 Identities=10% Similarity=-0.027 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 021727 44 VVKTVAGTVLVMLISSVYNI 63 (308)
Q Consensus 44 ~~~iv~~~l~vLFlDSirrm 63 (308)
+..+...+.++-++|+|+.+
T Consensus 43 g~A~Glm~~f~~l~e~v~~l 62 (190)
T PF05266_consen 43 GMAVGLMVTFANLAEKVKKL 62 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 44444455566666666665
No 62
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=84.16 E-value=7.6 Score=34.34 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 021727 159 KDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQN 202 (308)
Q Consensus 159 ekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~k 202 (308)
+.++++++.-+++.++-+.+.+.|.+|++..+.++|+++..|+.
T Consensus 69 ~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~ 112 (157)
T PF14235_consen 69 AAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHALHHHHR 112 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccch
Confidence 44555555555555566667899999999999999999888775
No 63
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=83.37 E-value=35 Score=30.90 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=29.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 150 QMTTLKLKLKDLESELETKSKEANAAETNAV-ALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~k~kel~kae~d~e-aLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
++..+..+.+.|+.++..........++..+ ......+....|.|-|...++.|.+++.
T Consensus 128 ~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 128 EIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444433333322222 2333344456677777777777766654
No 64
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=83.10 E-value=22 Score=28.37 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=25.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
--+.+-|.+.|.+++-.++.+|+..|..-.
T Consensus 84 ~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~ 113 (117)
T smart00503 84 DRTRKAQTEKLRKKFKEVMNEFQRLQRKYR 113 (117)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788999999999999999999887654
No 65
>PRK12704 phosphodiesterase; Provisional
Probab=82.70 E-value=29 Score=36.22 Aligned_cols=42 Identities=21% Similarity=0.136 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 165 LETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 165 Lk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
|+.+.++|.+.+.+++..++..+...++++...++.+++..+
T Consensus 98 Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~ 139 (520)
T PRK12704 98 LDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEE 139 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666666666777777777777777665433
No 66
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=82.47 E-value=9.3 Score=33.02 Aligned_cols=31 Identities=13% Similarity=0.200 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 021727 106 IDRLHHYIRELRIRRKTMEAIKNQSRGFEDG 136 (308)
Q Consensus 106 I~Rl~sLI~eLa~le~~~ealkKQa~~a~~~ 136 (308)
|+++..+..+...+++..+..++|.+++..+
T Consensus 22 iN~Fsrl~~R~~~lk~dik~~k~~~enledA 52 (131)
T KOG1760|consen 22 INEFSRLNSRKDDLKADIKEAKTEIENLEDA 52 (131)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777788888888888888777653
No 67
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.41 E-value=7.1 Score=41.35 Aligned_cols=90 Identities=26% Similarity=0.343 Sum_probs=59.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccccccccCccce
Q 021727 150 QMTTLKLKLKDLESELETKSKEANAA-------ETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHSDFRTV 222 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~k~kel~ka-------e~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~s~~~~k~~ 222 (308)
+.+.++.||+.|-.++++...+..++ -.+..+||+|.+.++.+||-.-.|.++++..+... ++.-||+
T Consensus 9 ~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~-----~s~hkk~ 83 (772)
T KOG0999|consen 9 EVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQY-----RSQHKKV 83 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHh
Confidence 34457778888888887777665444 22568999999999999999999998888766532 2222333
Q ss_pred eec---------cccccccccchhhhhhhhh
Q 021727 223 YWN---------AEKTASSTYCAAKVLDFEL 244 (308)
Q Consensus 223 ~~~---------~~~~~~~~~~~~~~~~~~~ 244 (308)
--. -|..|--+|.--|+++.+-
T Consensus 84 ~~~g~e~EesLLqESaakE~~yl~kI~elen 114 (772)
T KOG0999|consen 84 ARDGEEREESLLQESAAKEEYYLQKILELEN 114 (772)
T ss_pred hccchhhHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 221 2333445676677766653
No 68
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=82.34 E-value=7.6 Score=30.21 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=7.4
Q ss_pred HHhhHHHHHHHHHHHHHH
Q 021727 185 QSEGFLFEYDRLLEENQN 202 (308)
Q Consensus 185 Qae~L~kEYDRL~eE~~k 202 (308)
+-+.|..|..+|.+|++.
T Consensus 40 e~~~L~~en~~L~~e~~~ 57 (72)
T PF06005_consen 40 ENEELKEENEQLKQERNA 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444443
No 69
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.31 E-value=29 Score=35.89 Aligned_cols=94 Identities=19% Similarity=0.258 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHH
Q 021727 115 ELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYD 194 (308)
Q Consensus 115 eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYD 194 (308)
++-..+..++.+..++.+++........+.+.......++..+++++.+|++..+++=+...++.+..+.+++-++.-+.
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~ 427 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREK 427 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55555555555555544432210000011122222333445566666666665554333444455555555554444444
Q ss_pred HHHHHH----HHHHHhHh
Q 021727 195 RLLEEN----QNLRNQLQ 208 (308)
Q Consensus 195 RL~eE~----~kLq~~l~ 208 (308)
+....+ +.||+|+.
T Consensus 428 ~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 428 EALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444333 34666543
No 70
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=82.27 E-value=16 Score=41.16 Aligned_cols=101 Identities=18% Similarity=0.228 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccc--cccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHH-------HhhhHHHH
Q 021727 111 HYIRELRIRRKTMEAIKNQSRG--FEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEAN-------AAETNAVA 181 (308)
Q Consensus 111 sLI~eLa~le~~~ealkKQa~~--a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~-------kae~d~ea 181 (308)
-+..++.+++.++.|++...-- +++.-.....|.+...+.++.+..|++.++.+++......- ....+.+.
T Consensus 408 d~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~ 487 (1041)
T KOG0243|consen 408 DLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEK 487 (1041)
T ss_pred HHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4455677777777776542110 00000011112233333444444455555555544444322 23456677
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhHhhcc
Q 021727 182 LRKQSEGFLFEYDRLLEENQNLRNQLQSLD 211 (308)
Q Consensus 182 LKKQae~L~kEYDRL~eE~~kLq~~l~~~d 211 (308)
+|++..+...|...+.+|+++++.++...+
T Consensus 488 ~k~~L~~~~~el~~~~ee~~~~~~~l~~~e 517 (1041)
T KOG0243|consen 488 LKSKLQNKNKELESLKEELQQAKATLKEEE 517 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888778777777776654433
No 71
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=82.15 E-value=20 Score=39.04 Aligned_cols=33 Identities=36% Similarity=0.419 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHhhH----------HHHHHHHHHHHHHHHHhHh
Q 021727 176 ETNAVALRKQSEGF----------LFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 176 e~d~eaLKKQae~L----------~kEYDRL~eE~~kLq~~l~ 208 (308)
|.+.-.|+||..+| .-|..||.+|.+-|+.|++
T Consensus 103 EeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qle 145 (717)
T PF09730_consen 103 EEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLE 145 (717)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777776544 3344466666666666665
No 72
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.00 E-value=9.7 Score=42.77 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHhHhhcccccc
Q 021727 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEY-------DRLLEENQNLRNQLQSLDWRLS 215 (308)
Q Consensus 158 vekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEY-------DRL~eE~~kLq~~l~~~d~~~s 215 (308)
.+.|+-|.++.++++...+..++.+.+|.+.+..|- +....++.+++.++.....+..
T Consensus 817 ~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~ 881 (1174)
T KOG0933|consen 817 YERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQR 881 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555444444444 4444555666666665555553
No 73
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=81.40 E-value=19 Score=34.68 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 151 MTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 151 ~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
++..+..+..++.+-...+.++++.+.|++--+|..+.|+.-==--++||+++...++
T Consensus 178 ~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~ 235 (267)
T PF10234_consen 178 LQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQ 235 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 3334444455555555555555555666666666666665544444667777666655
No 74
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=81.15 E-value=9.7 Score=33.52 Aligned_cols=52 Identities=17% Similarity=0.281 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HHhhHHHHHHHHHHHHHH
Q 021727 151 MTTLKLKLKDLESELETKSKEANAAETNAVALRK---QSEGFLFEYDRLLEENQN 202 (308)
Q Consensus 151 ~~~l~~evekLk~eLk~k~kel~kae~d~eaLKK---Qae~L~kEYDRL~eE~~k 202 (308)
+...+.++.+++.+++..+.+|..+...++.|++ =.+.|+.+++.|..++..
T Consensus 15 i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~ 69 (155)
T PF06810_consen 15 IEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKT 69 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 3334567777788888888888888888888887 455667777777777663
No 75
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=80.77 E-value=20 Score=33.31 Aligned_cols=22 Identities=18% Similarity=0.080 Sum_probs=9.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH
Q 021727 178 NAVALRKQSEGFLFEYDRLLEE 199 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE 199 (308)
..+.+.++.+.++++-++|..+
T Consensus 71 ~~~~l~~~v~~q~~el~~L~~q 92 (251)
T PF11932_consen 71 YNEQLERQVASQEQELASLEQQ 92 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 76
>PHA02562 46 endonuclease subunit; Provisional
Probab=80.65 E-value=16 Score=37.26 Aligned_cols=16 Identities=13% Similarity=0.295 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 021727 108 RLHHYIRELRIRRKTM 123 (308)
Q Consensus 108 Rl~sLI~eLa~le~~~ 123 (308)
|+..+-.+...++.+.
T Consensus 300 ~~~~l~d~i~~l~~~l 315 (562)
T PHA02562 300 RITKIKDKLKELQHSL 315 (562)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333344333
No 77
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=80.62 E-value=12 Score=31.26 Aligned_cols=50 Identities=34% Similarity=0.415 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccc
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDW 212 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~ 212 (308)
..+..++.++...-. ++.+||+|...+..|=.+|.-|+++|+..+...+.
T Consensus 8 ~~l~~le~~l~~l~~-------~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLE-------ELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666665554 67999999999999999999999999999886544
No 78
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=80.44 E-value=23 Score=34.81 Aligned_cols=98 Identities=17% Similarity=0.253 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccc-hHHHHH---hHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 021727 111 HYIRELRIRRKTMEAIKNQSRGFEDGKAAS-SEEIKA---LEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQS 186 (308)
Q Consensus 111 sLI~eLa~le~~~ealkKQa~~a~~~~~~~-~~e~~~---~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQa 186 (308)
.+=..+-.++++...++.++..+....... ..|..- -..+....+.++..|..+|..+.++......++..|..|.
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqi 243 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQI 243 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666655443211000 011111 1223334456778899999999999888889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhHh
Q 021727 187 EGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 187 e~L~kEYDRL~eE~~kLq~~l~ 208 (308)
-.+++..-.+.-|+++|+..+.
T Consensus 244 vdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 244 VDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999999988887765
No 79
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.88 E-value=89 Score=33.30 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccccccccCccc
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHSDFRT 221 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~s~~~~k~ 221 (308)
.++-|++.++--..|-.+|..++..|+++++.. .+|..|-++
T Consensus 295 ~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q--~iS~~dve~ 336 (581)
T KOG0995|consen 295 KLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ--GISGEDVER 336 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHH
Confidence 344444444444444445555555555555543 455555544
No 80
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=79.85 E-value=22 Score=28.67 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=7.6
Q ss_pred HHHHHHHHhhHHHHHHHHHH
Q 021727 179 AVALRKQSEGFLFEYDRLLE 198 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~e 198 (308)
.+.|+.++..+..+...+-+
T Consensus 69 ~~~l~~e~~~lk~~i~~le~ 88 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEE 88 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 81
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=79.54 E-value=22 Score=37.60 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHH
Q 021727 152 TTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLE 198 (308)
Q Consensus 152 ~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~e 198 (308)
+.+.+++++++.++.+...++...+.+++.+++|.+.+.++++++.+
T Consensus 424 ~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 470 (650)
T TIGR03185 424 AQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTK 470 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555444444455555555555555555544433
No 82
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=79.38 E-value=47 Score=34.66 Aligned_cols=38 Identities=21% Similarity=0.124 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 021727 166 ETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNL 203 (308)
Q Consensus 166 k~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kL 203 (308)
+.+.++|.+.+.+++..+++.+...++.+.+.++.+.+
T Consensus 93 ekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~ 130 (514)
T TIGR03319 93 DRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEEL 130 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555555555556666665555543
No 83
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=79.34 E-value=22 Score=30.24 Aligned_cols=39 Identities=18% Similarity=0.099 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHH
Q 021727 162 ESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEEN 200 (308)
Q Consensus 162 k~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~ 200 (308)
+.+++....++...-.++..|+.+...+.++|+.+...+
T Consensus 54 ~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~ 92 (150)
T PF07200_consen 54 EPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNY 92 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 333333333333333445556666666666666555544
No 84
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=79.31 E-value=51 Score=30.81 Aligned_cols=97 Identities=11% Similarity=0.186 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 021727 105 MIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRK 184 (308)
Q Consensus 105 VI~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKK 184 (308)
++++.+.+...+..+...+........... ........++..+..+++.|+.+.........+...+.+.+.+
T Consensus 15 ~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~-------~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~ 87 (264)
T PF06008_consen 15 AWPAPYKLLSSIEDLTNQLRSYRSKLNPQK-------QQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQ 87 (264)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhccchhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666555555554444432211100 0112223334445556666666555555555555556666666
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 185 QSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 185 Qae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+++.|......+...-+.+-.++.
T Consensus 88 ~a~~L~~~i~~l~~~i~~l~~~~~ 111 (264)
T PF06008_consen 88 RAQDLEQFIQNLQDNIQELIEQVE 111 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666555554
No 85
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=79.12 E-value=37 Score=38.12 Aligned_cols=66 Identities=27% Similarity=0.322 Sum_probs=45.3
Q ss_pred HHHHhHHHhHHHHHHHHHH-------HHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 143 EIKALEDQMTTLKLKLKDL-------ESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 143 e~~~~~~e~~~l~~evekL-------k~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+-+.+...|.+|++-+-+| |.......+++++.+.+++.|+.|.|+|.++-|.+--....||+|++
T Consensus 369 qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 369 QFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666665433222 33444455566666778899999999999999988877788888876
No 86
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=79.09 E-value=57 Score=30.65 Aligned_cols=49 Identities=20% Similarity=0.340 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 158 vekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
+......+...+..++.++.+.+..+..+..+..||.+|.++-++++..
T Consensus 55 LrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 55 LRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555556666666777788888889999999999999999998877
No 87
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=79.07 E-value=14 Score=32.10 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHH-HHHHHH
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEE-NQNLRN 205 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE-~~kLq~ 205 (308)
..++.|+.|++..+..+++....+..|++.++.+..++.+..++ |+.|+.
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~ 91 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQL 91 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcc
Confidence 34556777777777777777778999999999999999999888 666664
No 88
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=79.02 E-value=19 Score=38.50 Aligned_cols=27 Identities=7% Similarity=0.076 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021727 103 AFMIDRLHHYIRELRIRRKTMEAIKNQ 129 (308)
Q Consensus 103 ~LVI~Rl~sLI~eLa~le~~~ealkKQ 129 (308)
|.=..|+..+|-.=..+.+.++..+.+
T Consensus 374 ~~d~~rika~VIrG~~l~eal~~~~e~ 400 (652)
T COG2433 374 WKDVERIKALVIRGYPLAEALSKVKEE 400 (652)
T ss_pred hhhHHHHHHHeecCCcHHHHHHHHHhh
Confidence 344555555555555555544444433
No 89
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=78.36 E-value=38 Score=28.24 Aligned_cols=46 Identities=20% Similarity=0.202 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHH
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQ 201 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~ 201 (308)
.+..+|+.+|+.++..|.+.+.+++.|.=.-.+|.+.-..|.+|.+
T Consensus 26 ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 26 AKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999888888877666666666665655554
No 90
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=78.28 E-value=21 Score=41.28 Aligned_cols=47 Identities=21% Similarity=0.298 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHH
Q 021727 151 MTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLL 197 (308)
Q Consensus 151 ~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~ 197 (308)
...+..+++.++.+++....++..++.+++.+++|.+.+..+++.|.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~ 324 (1353)
T TIGR02680 278 YDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQ 324 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555666666666666666666666666666666666665553
No 91
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=78.19 E-value=33 Score=33.60 Aligned_cols=56 Identities=23% Similarity=0.206 Sum_probs=27.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~ 205 (308)
+...+++++.++..++..+.+++...+.++..++...+.....=..+.++.+++++
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555444555555555555555555555555544444
No 92
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=78.11 E-value=8.6 Score=30.67 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=11.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH
Q 021727 184 KQSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 184 KQae~L~kEYDRL~eE~~kLq~ 205 (308)
...+...+.+=+++-||+.+++
T Consensus 32 ~~~~~~v~~hI~lLheYNeiKD 53 (83)
T PF07061_consen 32 EDPEKIVKRHIKLLHEYNEIKD 53 (83)
T ss_pred cCHHHHHHHHHHHHHHHhHHHH
Confidence 3444555555556666665543
No 93
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=78.08 E-value=48 Score=30.69 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 158 vekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
.+.++..+..+...++.++.-.+.....+..|+++-|+|-++...-+..
T Consensus 171 e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~ 219 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEK 219 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666777777767777777777777777776666554433
No 94
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=78.07 E-value=12 Score=39.49 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=25.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHH
Q 021727 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFL 190 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~ 190 (308)
++.+..+++++|+.++++....++.+.++++..++|.++.-
T Consensus 213 ~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~ 253 (555)
T TIGR03545 213 ELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADL 253 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34445566777777777766666666666666666655543
No 95
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=77.89 E-value=46 Score=28.86 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727 153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (308)
Q Consensus 153 ~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq 204 (308)
.|.++++.....|+.....+..+....+.+-.|...|..+-|..-..|+.+.
T Consensus 84 ~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~ 135 (143)
T PF12718_consen 84 LLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELE 135 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3334444444444444444443333334444444444444444444444333
No 96
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=77.84 E-value=21 Score=33.97 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 152 TTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 152 ~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+.|.+++++|+.++++.+++++ .|.+.-..|+..+++|..|+.+|+...+
T Consensus 152 eeL~~eleele~e~ee~~erlk-------~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 152 EELLKELEELEAEYEEVQERLK-------RLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 3344555555555555444432 3333333444445555555555554433
No 97
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=77.69 E-value=9.9 Score=30.67 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 021727 176 ETNAVALRKQSEGFLFEYDRLLEENQN 202 (308)
Q Consensus 176 e~d~eaLKKQae~L~kEYDRL~eE~~k 202 (308)
+++..++++++++.+++--.|-.||.+
T Consensus 42 E~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 42 EKELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 456667777777766666555555443
No 98
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=77.18 E-value=25 Score=30.21 Aligned_cols=90 Identities=16% Similarity=0.176 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 021727 105 MIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRK 184 (308)
Q Consensus 105 VI~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKK 184 (308)
.=.+.-.+.+++..++++.+.+.+. +.+. -.+.+...+..+.--.+..+++.+++++-.++.. ..+.---|.
T Consensus 18 aA~~~~~v~~~l~~LEae~q~L~~k-E~~r------~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~-~~~~r~yk~ 89 (126)
T PF09403_consen 18 AATATASVESELNQLEAEYQQLEQK-EEAR------YNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQ-DSKVRWYKD 89 (126)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHH-HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HGGGSTTHH
T ss_pred HcccchHHHHHHHHHHHHHHHHHHH-HHHH------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hcchhHHHH
Confidence 3344557888888888888887642 1000 0000111110001112233344444444433322 234445566
Q ss_pred HHhhHHHHHHHHHHHHHH
Q 021727 185 QSEGFLFEYDRLLEENQN 202 (308)
Q Consensus 185 Qae~L~kEYDRL~eE~~k 202 (308)
|..++.+.|+.+..+.++
T Consensus 90 eYk~llk~y~~~~~~L~k 107 (126)
T PF09403_consen 90 EYKELLKKYKDLLNKLDK 107 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666555443
No 99
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=77.05 E-value=50 Score=34.44 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHH
Q 021727 163 SELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEE 199 (308)
Q Consensus 163 ~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE 199 (308)
.+|+.++++|...+.+++..+++.+.+..+++++.++
T Consensus 97 e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~ 133 (514)
T TIGR03319 97 ESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAE 133 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555555555555544444
No 100
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=77.04 E-value=37 Score=31.90 Aligned_cols=17 Identities=29% Similarity=0.600 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhHh
Q 021727 192 EYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 192 EYDRL~eE~~kLq~~l~ 208 (308)
.-.|+.+||..|++++.
T Consensus 82 ~i~r~~eey~~Lk~~in 98 (230)
T PF10146_consen 82 KIQRLYEEYKPLKDEIN 98 (230)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555555555544
No 101
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=76.91 E-value=11 Score=34.02 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021727 108 RLHHYIRELRIRRKTMEAIK 127 (308)
Q Consensus 108 Rl~sLI~eLa~le~~~ealk 127 (308)
.....-..+..++++.+.+.
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~ 82 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELE 82 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444433333
No 102
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=76.91 E-value=6.4 Score=38.47 Aligned_cols=15 Identities=40% Similarity=0.565 Sum_probs=7.9
Q ss_pred hhhHHHHHHHHHHHH
Q 021727 42 PVVVKTVAGTVLVML 56 (308)
Q Consensus 42 ~~~~~iv~~~l~vLF 56 (308)
|..+..++.-|++||
T Consensus 116 P~~V~~V~~aV~iLl 130 (344)
T PF12777_consen 116 PEAVKLVMEAVCILL 130 (344)
T ss_dssp -HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHhhHH
Confidence 445555555555555
No 103
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=76.89 E-value=56 Score=29.83 Aligned_cols=29 Identities=24% Similarity=0.182 Sum_probs=10.9
Q ss_pred HHHHHHhhhHHHHHHHHHhhHHHHHHHHH
Q 021727 169 SKEANAAETNAVALRKQSEGFLFEYDRLL 197 (308)
Q Consensus 169 ~kel~kae~d~eaLKKQae~L~kEYDRL~ 197 (308)
+++++..+-+.+.|.-+.+.+..|.|.|.
T Consensus 99 ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 99 EKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 104
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=76.84 E-value=27 Score=39.55 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHH
Q 021727 161 LESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEE 199 (308)
Q Consensus 161 Lk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE 199 (308)
++.++.+.+.+++.-+.+++.+..|...|..|++.+.++
T Consensus 392 ~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~ 430 (1074)
T KOG0250|consen 392 LGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEK 430 (1074)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444555555555555555544444
No 105
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=76.82 E-value=8.6 Score=40.97 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHH
Q 021727 155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQ 201 (308)
Q Consensus 155 ~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~ 201 (308)
..|++++...+++.++.+..++.|+.+||--.|+-+..|..|.+.++
T Consensus 106 ~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~ 152 (907)
T KOG2264|consen 106 NSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNN 152 (907)
T ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 34445555555555555555666788888888888888888877654
No 106
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=76.82 E-value=54 Score=29.15 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727 176 ETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 176 e~d~eaLKKQae~L~kEYDRL~eE~~kLq~ 205 (308)
+.+++.+|++.+..+.|++.|.+..+++++
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777766666666666665553
No 107
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=76.71 E-value=22 Score=40.69 Aligned_cols=49 Identities=22% Similarity=0.361 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 157 evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~ 205 (308)
++..++.+|...+.+++.+++++..+++-..++..--.++.++.+.+++
T Consensus 543 ~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks 591 (1293)
T KOG0996|consen 543 ELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKS 591 (1293)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555666666555555444445444444443
No 108
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=76.71 E-value=29 Score=30.57 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=21.5
Q ss_pred HHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021727 94 TLMGASLFLA-FMIDRLHHYIRELRIRRKTMEAIKNQ 129 (308)
Q Consensus 94 YISGFsLFL~-LVI~Rl~sLI~eLa~le~~~ealkKQ 129 (308)
||..+.+.|. +.+-.+..+..++.+++..++.+++-
T Consensus 2 ~i~i~l~~l~iilli~~~~~~~kl~kl~r~Y~~lm~g 38 (151)
T PF14584_consen 2 YIIIGLLVLVIILLILIIILNIKLRKLKRRYDALMRG 38 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3433333333 33445556667778888888888753
No 109
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.53 E-value=30 Score=37.05 Aligned_cols=8 Identities=13% Similarity=0.152 Sum_probs=3.5
Q ss_pred hhhccCCc
Q 021727 246 TKLSMGSS 253 (308)
Q Consensus 246 ~~~~~~~~ 253 (308)
+.++-|.+
T Consensus 550 v~~~sG~g 557 (652)
T COG2433 550 VEDPSGGG 557 (652)
T ss_pred EEcCCCcc
Confidence 34444444
No 110
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=76.41 E-value=15 Score=32.10 Aligned_cols=75 Identities=24% Similarity=0.358 Sum_probs=44.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 021727 94 TLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEAN 173 (308)
Q Consensus 94 YISGFsLFL~LVI~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~ 173 (308)
--.||.+.|..+|--+. .+-..++.+..+++..-.|.+. ...+|.++.......+.+++.-|+.++++.+.+++
T Consensus 38 lsLgl~~LLLV~IcVig---sQ~~qlq~dl~tLretfsNFss---st~aEvqaL~S~G~sl~~kVtSLea~lEkqqQeLk 111 (138)
T PF03954_consen 38 LSLGLSLLLLVVICVIG---SQNSQLQRDLRTLRETFSNFSS---STLAEVQALSSQGGSLQDKVTSLEAKLEKQQQELK 111 (138)
T ss_pred HHHHHHHHHHHHHHhhc---CccHHHHHHHHHHHHHHhcccH---HHHHHHHHHHhccccHHhHcccHHHHHHHHHHHHh
Confidence 44577776665554333 3456777777777665444432 12334444444444566677778888887777664
Q ss_pred H
Q 021727 174 A 174 (308)
Q Consensus 174 k 174 (308)
.
T Consensus 112 A 112 (138)
T PF03954_consen 112 A 112 (138)
T ss_pred h
Confidence 4
No 111
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=76.38 E-value=28 Score=31.23 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 021727 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQN 202 (308)
Q Consensus 157 evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~k 202 (308)
|.++|+.+++....+++..+++++.|+++..-.+.+|.-|..=-+.
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443344445566666666666666655543333
No 112
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=76.28 E-value=18 Score=30.56 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=29.8
Q ss_pred HHHhhhHHHHHHHHHhhHHHHHHHHHHH----HHHHHHhHhhc
Q 021727 172 ANAAETNAVALRKQSEGFLFEYDRLLEE----NQNLRNQLQSL 210 (308)
Q Consensus 172 l~kae~d~eaLKKQae~L~kEYDRL~eE----~~kLq~~l~~~ 210 (308)
+..++..+++++.+.++|+..|+||..| |++++.....-
T Consensus 67 ~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L 109 (132)
T PF10392_consen 67 IEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQL 109 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3455678899999999999999999887 45555554433
No 113
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=76.08 E-value=38 Score=27.05 Aligned_cols=55 Identities=22% Similarity=0.326 Sum_probs=37.6
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 147 LEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 147 ~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
..|+|.-|.-|+++||.+-..... +.+.++.+-+.|..|.+.|.+||+.=|..+.
T Consensus 16 AvdtI~LLqmEieELKekn~~L~~-------e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 16 AIDTITLLQMEIEELKEKNNSLSQ-------EVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777765554444 4677777777888888889888877655543
No 114
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=75.76 E-value=43 Score=27.51 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHH
Q 021727 175 AETNAVALRKQSEGFLFEYDRLLEE 199 (308)
Q Consensus 175 ae~d~eaLKKQae~L~kEYDRL~eE 199 (308)
.+-++.++..|.++++.--+.|+|.
T Consensus 77 l~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 77 LRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335566666666665555555543
No 115
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=75.69 E-value=57 Score=29.82 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHH
Q 021727 159 KDLESELETKSKEANAAETNAVALRKQSEGFLFEYDR 195 (308)
Q Consensus 159 ekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDR 195 (308)
++|..+|...+.++..++..+..|.+|++-.++.|.|
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~r 157 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRR 157 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3455555555555555555555666665555554443
No 116
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=75.51 E-value=42 Score=35.93 Aligned_cols=109 Identities=12% Similarity=0.228 Sum_probs=63.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc-cchHH-------HHHhHHHhHHHHH----------
Q 021727 95 LMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKA-ASSEE-------IKALEDQMTTLKL---------- 156 (308)
Q Consensus 95 ISGFsLFL~LVI~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~-~~~~e-------~~~~~~e~~~l~~---------- 156 (308)
.++=.==.++|+.=+-.-=..+..++...+.+..|.+.+..+.. ++.+. ....+.+|..|..
T Consensus 230 ~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~ 309 (629)
T KOG0963|consen 230 VAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLV 309 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334455554444444555566666666666554432210 11111 1113334444443
Q ss_pred -HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727 157 -KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (308)
Q Consensus 157 -evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq 204 (308)
+.++.+.++...++++++....++.|+++.++. ..||.+..|..-|+
T Consensus 310 ~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 310 EEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHH
Confidence 344566677777777777778888999998887 78988888877766
No 117
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=75.49 E-value=38 Score=35.10 Aligned_cols=59 Identities=20% Similarity=0.192 Sum_probs=35.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHh-----------------hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 021727 149 DQMTTLKLKLKDLESELETKSKEANAA-----------------ETNAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (308)
Q Consensus 149 ~e~~~l~~evekLk~eLk~k~kel~ka-----------------e~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l 207 (308)
.|++..++|+|.|..+|++.++|++.. |.++.-..||-.+-.++.-.-.|..++++++.
T Consensus 302 ~e~e~~rkelE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKr 377 (575)
T KOG4403|consen 302 VENETSRKELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKR 377 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 355566667777777777766666433 44555555665666666655556666776553
No 118
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=75.02 E-value=11 Score=39.11 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq~~l 207 (308)
+++.|.+|.+.++..-+.+.+|++.|+.|+
T Consensus 91 Elq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 91 ELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555556665555
No 119
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.59 E-value=48 Score=36.00 Aligned_cols=123 Identities=24% Similarity=0.308 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccc----hHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 021727 107 DRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAAS----SEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVAL 182 (308)
Q Consensus 107 ~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~----~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaL 182 (308)
-|+-+.+.++-+.++.++.+-....+..-..+.. .++........+++.-++++|+.+|......+..++...+.+
T Consensus 422 krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~ 501 (716)
T KOG4593|consen 422 KRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELL 501 (716)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4566666666666666665544333221111111 111222333444555667777777777777777777777777
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhHh--hccccccccCccceeeccccc
Q 021727 183 RKQSEGFLFEYDRLLEENQNLRNQLQ--SLDWRLSHSDFRTVYWNAEKT 229 (308)
Q Consensus 183 KKQae~L~kEYDRL~eE~~kLq~~l~--~~d~~~s~~~~k~~~~~~~~~ 229 (308)
..-.++..++-+.|..|+..|+.++. ...-.++-+++|-+-.+.-+|
T Consensus 502 ~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rVl~~~~npt 550 (716)
T KOG4593|consen 502 REKIEQYLKELELLEEENDRLRAQLERRLLQGDYEENITRVLHMSTNPT 550 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCch
Confidence 77788888999999999888887665 334445566666666655555
No 120
>PRK09039 hypothetical protein; Validated
Probab=74.57 E-value=51 Score=32.50 Aligned_cols=50 Identities=12% Similarity=0.011 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNL 203 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kL 203 (308)
...++..|+.|++..+..+...+..+++.+.|-...+..++.|..+.++.
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777777777777777777777777776666554
No 121
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=74.40 E-value=25 Score=32.43 Aligned_cols=85 Identities=16% Similarity=0.226 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHH----HHHHHHHH-------HHHHHhhhH
Q 021727 110 HHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDL----ESELETKS-------KEANAAETN 178 (308)
Q Consensus 110 ~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekL----k~eLk~k~-------kel~kae~d 178 (308)
+.|=++|+.+++.++.+.+++..... ........ .+.|.+.| +.++...+ ..++..+.|
T Consensus 99 vrLkrELa~Le~~l~~~~~~~~~~~~---~~~~~~~l-------vk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~D 168 (195)
T PF12761_consen 99 VRLKRELAELEEKLSKVEQAAESRRS---DTDSKPAL-------VKREFEQLLDYKERQLRELEEGRSKSGKNLKSVRED 168 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc---CCcchHHH-------HHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHH
Confidence 44556788888888777766554210 00111111 12233322 22222221 245667889
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727 179 AVALRKQSEGFLFEYDRLLEENQNLR 204 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~eE~~kLq 204 (308)
+++++.|.++|+.....=..|.+.|+
T Consensus 169 l~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 169 LDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999887765555555554
No 122
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=73.93 E-value=29 Score=32.50 Aligned_cols=18 Identities=39% Similarity=0.503 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhHhh
Q 021727 192 EYDRLLEENQNLRNQLQS 209 (308)
Q Consensus 192 EYDRL~eE~~kLq~~l~~ 209 (308)
+|+.+.+|+++|++.+..
T Consensus 94 ~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 94 ELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 355677777777777663
No 123
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=73.41 E-value=53 Score=27.45 Aligned_cols=28 Identities=11% Similarity=0.194 Sum_probs=20.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 021727 180 VALRKQSEGFLFEYDRLLEENQNLRNQL 207 (308)
Q Consensus 180 eaLKKQae~L~kEYDRL~eE~~kLq~~l 207 (308)
-.-+.|.+.|.+.+-..+.+|+..|..-
T Consensus 84 r~~~~q~~~L~~~f~~~m~~fq~~Q~~~ 111 (151)
T cd00179 84 RIRKTQHSGLSKKFVEVMTEFNKAQRKY 111 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557788888888888888888776543
No 124
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=73.39 E-value=74 Score=30.80 Aligned_cols=94 Identities=26% Similarity=0.358 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHhcccccccccccchHHHHHhHHHhHHHHH------HHHHHHHHHHHHHHH
Q 021727 105 MIDRLHHYIRELRIRRKTME-------AIKNQSRGFEDGKAASSEEIKALEDQMTTLKL------KLKDLESELETKSKE 171 (308)
Q Consensus 105 VI~Rl~sLI~eLa~le~~~e-------alkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~------evekLk~eLk~k~ke 171 (308)
|-+|+..|+.++..++.... ...|...+.+++....-+.-....++|.+++. ++..|+.||...+.+
T Consensus 101 IsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae 180 (271)
T PF13805_consen 101 ISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAE 180 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 45566666665555555433 33333333222110001111233344444442 356677777777776
Q ss_pred HHHhhhHHHHHHHHH--hhHHHHHHHHHH
Q 021727 172 ANAAETNAVALRKQS--EGFLFEYDRLLE 198 (308)
Q Consensus 172 l~kae~d~eaLKKQa--e~L~kEYDRL~e 198 (308)
..-+|+.+..+|-|. |++...++-+.|
T Consensus 181 ~lvaEAqL~n~kR~~lKEa~~~~f~Al~E 209 (271)
T PF13805_consen 181 NLVAEAQLSNIKRQKLKEAYSLKFDALIE 209 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 666677777666653 455555665544
No 125
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=72.97 E-value=44 Score=29.34 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh------hcccccccc
Q 021727 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ------SLDWRLSHS 217 (308)
Q Consensus 157 evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~------~~d~~~s~~ 217 (308)
++++....+......-.....+-.+|..++++|..|..+|.+-.+.+...+. ..-+++++.
T Consensus 22 ~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~p 88 (157)
T PF04136_consen 22 QTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNSP 88 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCC
Confidence 3344444444444444455556778889999999999998888777666544 334555544
No 126
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=72.89 E-value=42 Score=26.06 Aligned_cols=18 Identities=11% Similarity=0.309 Sum_probs=8.0
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 021727 150 QMTTLKLKLKDLESELET 167 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~ 167 (308)
.++.|+.|+++|+.+-..
T Consensus 19 ti~~Lq~e~eeLke~n~~ 36 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNE 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444444444444433
No 127
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=72.66 E-value=16 Score=30.48 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=17.3
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHH
Q 021727 144 IKALEDQMTTLKLKLKDLESELETKS 169 (308)
Q Consensus 144 ~~~~~~e~~~l~~evekLk~eLk~k~ 169 (308)
.....+||..|+-|+++|...|...+
T Consensus 31 ~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 31 LQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455677777777777777776544
No 128
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=72.65 E-value=60 Score=30.85 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=20.3
Q ss_pred HHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 168 KSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 168 k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+..++..++.+..+|..+...+..++.+|.++-..++.++.
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~ 134 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLE 134 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555555555444444433
No 129
>PRK02224 chromosome segregation protein; Provisional
Probab=72.55 E-value=41 Score=36.46 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=6.5
Q ss_pred CCCCCcccchhh
Q 021727 289 PFPSSAYSTEAR 300 (308)
Q Consensus 289 ~~~~~~~~~~~~ 300 (308)
++|...+|...+
T Consensus 776 ~~~~~~lS~G~~ 787 (880)
T PRK02224 776 PLEPEQLSGGER 787 (880)
T ss_pred ccChhhcCccHH
Confidence 455556665543
No 130
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=72.23 E-value=45 Score=30.99 Aligned_cols=50 Identities=26% Similarity=0.235 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 021727 153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQN 202 (308)
Q Consensus 153 ~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~k 202 (308)
.+.++.+.++.+++.....|+-++...+-.-.....|+++-|+|-+....
T Consensus 134 ~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~ 183 (205)
T KOG1003|consen 134 KLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEE 183 (205)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHH
Confidence 34445566666777666666666555555555555555556655554443
No 131
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=72.14 E-value=34 Score=37.61 Aligned_cols=55 Identities=20% Similarity=0.198 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727 151 MTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 151 ~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~ 205 (308)
+.+++.|+++.-.+.+..+-.|+.++++..+|.--..+-..|-.||.+=.-.||+
T Consensus 496 ~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~ 550 (861)
T PF15254_consen 496 TTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQN 550 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444455555555555555555556666666544333443
No 132
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=72.12 E-value=37 Score=37.03 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=23.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021727 94 TLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIK 127 (308)
Q Consensus 94 YISGFsLFL~LVI~Rl~sLI~eLa~le~~~ealk 127 (308)
.+.|+..|+. .|+.++.+|+.-....+..+.++
T Consensus 371 il~g~~~~~~-~id~~i~iir~~~~~~~~~~~l~ 403 (738)
T TIGR01061 371 IVEGLIKAIS-IIDEIIKLIRSSEDKSDAKENLI 403 (738)
T ss_pred HHHHHHHHHH-hhhhHhHHHHcCCCHHHHHHHHH
Confidence 7999999998 89999998875443333333343
No 133
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=71.83 E-value=20 Score=28.88 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021727 106 IDRLHHYIRELRIRRKTMEAIK 127 (308)
Q Consensus 106 I~Rl~sLI~eLa~le~~~ealk 127 (308)
+.++..+-.+...+....+.++
T Consensus 28 vd~i~~ld~~~r~l~~~~e~lr 49 (108)
T PF02403_consen 28 VDEIIELDQERRELQQELEELR 49 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 134
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=71.82 E-value=30 Score=38.83 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 021727 158 LKDLESELETKSKEANAAETNAVALRKQSE 187 (308)
Q Consensus 158 vekLk~eLk~k~kel~kae~d~eaLKKQae 187 (308)
.+-|+.|++..++.+...+.|+|.||...+
T Consensus 327 aesLQ~eve~lkEr~deletdlEILKaEme 356 (1243)
T KOG0971|consen 327 AESLQQEVEALKERVDELETDLEILKAEME 356 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888887777777888999987654
No 135
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=71.80 E-value=62 Score=33.29 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 021727 107 DRLHHYIRELRIRRKTMEAIKNQ 129 (308)
Q Consensus 107 ~Rl~sLI~eLa~le~~~ealkKQ 129 (308)
.+.-.+..+++.+++..+++++-
T Consensus 27 k~~s~~~aq~~~~~a~~~ai~a~ 49 (459)
T KOG0288|consen 27 KAQSRLSAQLVILRAESRAIKAK 49 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777777777766553
No 136
>PHA02047 phage lambda Rz1-like protein
Probab=71.74 E-value=14 Score=30.71 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHH
Q 021727 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQ 201 (308)
Q Consensus 157 evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~ 201 (308)
+.+.|..+|+..+..+..-...+++|..+++...+|-++-+++|+
T Consensus 35 ~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~ 79 (101)
T PHA02047 35 EAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQNR 79 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345556666666666556666788888888888888887777664
No 137
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=71.57 E-value=28 Score=27.22 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=9.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH
Q 021727 179 AVALRKQSEGFLFEYDRLLEEN 200 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~eE~ 200 (308)
++.+.+|.+++..+-+++.++-
T Consensus 42 ~~~i~~e~~~ll~~~n~l~~dv 63 (90)
T PF06103_consen 42 VDPITKEINDLLHNTNELLEDV 63 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 138
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=71.23 E-value=25 Score=29.91 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=13.4
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHH
Q 021727 175 AETNAVALRKQSEGFLFEYDRLLE 198 (308)
Q Consensus 175 ae~d~eaLKKQae~L~kEYDRL~e 198 (308)
...++..|+.+.+.++..|+-+++
T Consensus 66 ~~~~~~~L~~el~~l~~ry~t~Le 89 (120)
T PF12325_consen 66 LKKEVEELEQELEELQQRYQTLLE 89 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666665543
No 139
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=71.17 E-value=33 Score=30.82 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=17.0
Q ss_pred HHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 021727 90 LLE-ATLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSR 131 (308)
Q Consensus 90 y~q-aYISGFsLFL~LVI~Rl~sLI~eLa~le~~~ealkKQa~ 131 (308)
++| +-=||| |-=+.|+. .+++..+.+++|-+
T Consensus 40 L~RTsAACGF---------RWNs~VRk--qY~~~i~~AKkqRk 71 (161)
T TIGR02894 40 LNRTAAACGF---------RWNAYVRK--QYEEAIELAKKQRK 71 (161)
T ss_pred HcccHHHhcc---------hHHHHHHH--HHHHHHHHHHHHHh
Confidence 666 566776 33444443 25555566666644
No 140
>PRK05560 DNA gyrase subunit A; Validated
Probab=70.94 E-value=43 Score=36.78 Aligned_cols=23 Identities=26% Similarity=0.160 Sum_probs=17.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 021727 94 TLMGASLFLAFMIDRLHHYIRELR 117 (308)
Q Consensus 94 YISGFsLFL~LVI~Rl~sLI~eLa 117 (308)
.+.|+..| ...|+.++.+|+.-.
T Consensus 374 ~l~g~~~~-~~~~d~vI~iir~s~ 396 (805)
T PRK05560 374 ILEGLLIA-LDNIDEVIALIRASP 396 (805)
T ss_pred HHHHHHHH-HHhhHHHHHHHHcCC
Confidence 89999998 457778887777544
No 141
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=70.80 E-value=27 Score=27.72 Aligned_cols=45 Identities=22% Similarity=0.190 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 155 ~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
-++.++|+..|..+++|+ +-|+..+++|...--...+-+.+|+.+
T Consensus 4 i~qNk~L~~kL~~K~eEI-------~rLn~lv~sLR~KLiKYt~LnkkLq~~ 48 (76)
T PF11544_consen 4 IKQNKELKKKLNDKQEEI-------DRLNILVGSLRGKLIKYTELNKKLQDQ 48 (76)
T ss_dssp --HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666543 444444554444433333334444443
No 142
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=70.72 E-value=23 Score=31.11 Aligned_cols=26 Identities=27% Similarity=0.260 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhhccccc
Q 021727 189 FLFEYDRLLEENQNLRNQLQSLDWRL 214 (308)
Q Consensus 189 L~kEYDRL~eE~~kLq~~l~~~d~~~ 214 (308)
+++..|.+.+|.++++++.......+
T Consensus 71 l~Rk~~kl~~el~~~~~~~~~~~~~~ 96 (161)
T PF04420_consen 71 LNRKLDKLEEELEKLNKSLSSEKSSF 96 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544444433
No 143
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=70.50 E-value=52 Score=27.83 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=10.3
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 021727 150 QMTTLKLKLKDLESELETK 168 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~k 168 (308)
+++..++++++|+.+|...
T Consensus 89 ~i~~~k~~ie~lk~~L~~a 107 (139)
T PF05615_consen 89 EIEQAKKEIEELKEELEEA 107 (139)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666543
No 144
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=70.44 E-value=34 Score=33.85 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=23.2
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 177 TNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 177 ~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
.+++.+++|.++|+.+|-.+.+|.+.+...-+
T Consensus 133 ~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD 164 (319)
T PF09789_consen 133 EQLEKLREQIEQLERDLQSLLDEKEELVTERD 164 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888888776654433
No 145
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.44 E-value=27 Score=33.66 Aligned_cols=45 Identities=16% Similarity=0.351 Sum_probs=21.8
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH
Q 021727 145 KALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (308)
Q Consensus 145 ~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L 189 (308)
+.+..+++.+..++++++.++.+.+.++++.+.+++.++..+...
T Consensus 55 ~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 55 ESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555555445555555555555554433
No 146
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=70.26 E-value=76 Score=27.88 Aligned_cols=57 Identities=30% Similarity=0.396 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHhHhhc
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGF-----LFEYDRLLEENQNLRNQLQSL 210 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L-----~kEYDRL~eE~~kLq~~l~~~ 210 (308)
..+.+.++..++.....+..+..+....|+.|...+ -..||+..++.+.++..+..-
T Consensus 103 ~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l 164 (177)
T PF13870_consen 103 REEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKEL 164 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555566666665543 357888888888887776643
No 147
>PRK04863 mukB cell division protein MukB; Provisional
Probab=70.15 E-value=45 Score=39.25 Aligned_cols=33 Identities=21% Similarity=0.190 Sum_probs=13.9
Q ss_pred HHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHH
Q 021727 168 KSKEANAAETNAVALRKQSEGFLFEYDRLLEEN 200 (308)
Q Consensus 168 k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~ 200 (308)
...++..++.+++.+++|...+..+.+.+..+.
T Consensus 381 leeEleelEeeLeeLqeqLaelqqel~elQ~el 413 (1486)
T PRK04863 381 NEARAEAAEEEVDELKSQLADYQQALDVQQTRA 413 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444443
No 148
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=70.00 E-value=31 Score=34.95 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=14.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 021727 179 AVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~eE~~kLq~~l 207 (308)
...+|+|.+++..+++.+.++...+-..+
T Consensus 75 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 75 VKELKEEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455555555555555555555444443
No 149
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=69.96 E-value=21 Score=39.59 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=10.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 021727 150 QMTTLKLKLKDLESELETKSKEA 172 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~k~kel 172 (308)
+++.+..++.+|..+|.++..++
T Consensus 142 elE~~~srlh~le~eLsAk~~eI 164 (1265)
T KOG0976|consen 142 EIENLNSRLHKLEDELSAKAHDI 164 (1265)
T ss_pred HHHhhHHHHHHHHHHHhhhhHHH
Confidence 34444444555555554444443
No 150
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=69.61 E-value=87 Score=28.33 Aligned_cols=97 Identities=23% Similarity=0.316 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 021727 107 DRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQS 186 (308)
Q Consensus 107 ~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQa 186 (308)
.++-.+-.++..+++..+.+..+.+.+..+. ..+.+-.....+.+.+.+++++|+.+++....- --..++.++++.
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r-~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~---Dp~~i~~~~~~~ 144 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEAKKGR-EESEEREELLEELEELKKELKELKKELEKYSEN---DPEKIEKLKEEI 144 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHH
Confidence 4455566666666666666665554443221 112222333344444555555555555532220 012366777777
Q ss_pred hhHHHHHHHHHHHHHHHHHhH
Q 021727 187 EGFLFEYDRLLEENQNLRNQL 207 (308)
Q Consensus 187 e~L~kEYDRL~eE~~kLq~~l 207 (308)
.....+-+|-.|-..-++.-+
T Consensus 145 ~~~~~~anrwTDNI~~l~~~~ 165 (188)
T PF03962_consen 145 KIAKEAANRWTDNIFSLKSYL 165 (188)
T ss_pred HHHHHHHHHHHhhHHHHHHHH
Confidence 777777777777666665443
No 151
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=69.53 E-value=22 Score=26.19 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH
Q 021727 178 NAVALRKQSEGFLFEYDRLLEE 199 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE 199 (308)
+.+.|+++...|..+++.|..+
T Consensus 41 en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 41 ENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555555555555555444
No 152
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=69.44 E-value=22 Score=33.83 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=31.9
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHH
Q 021727 143 EIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEE 199 (308)
Q Consensus 143 e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE 199 (308)
+..++.++++.+..++++++.+|+..+.+....+..+.-+--....|.+-+|.|-++
T Consensus 150 EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 150 EKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 344566677777777777777777766665444433333333334444444444433
No 153
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.32 E-value=48 Score=35.46 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHhhH---HHHHHHHHHHHHH
Q 021727 176 ETNAVALRKQSEGF---LFEYDRLLEENQN 202 (308)
Q Consensus 176 e~d~eaLKKQae~L---~kEYDRL~eE~~k 202 (308)
+.+.-.|+||..+| +=||..|.-|...
T Consensus 176 EEENIsLQKqVs~LR~sQVEyEglkheikR 205 (772)
T KOG0999|consen 176 EEENISLQKQVSNLRQSQVEYEGLKHEIKR 205 (772)
T ss_pred HHhcchHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 44556778877655 3455544444433
No 154
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=69.29 E-value=46 Score=40.17 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHH
Q 021727 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEEN 200 (308)
Q Consensus 157 evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~ 200 (308)
.+++|..+++....+++..++...-+++|-..+..||..|.++.
T Consensus 1098 ~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~L 1141 (1930)
T KOG0161|consen 1098 QIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEEL 1141 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444433
No 155
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=69.14 E-value=50 Score=37.55 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHH--------HHHHHHHHHHHhHhh
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYD--------RLLEENQNLRNQLQS 209 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYD--------RL~eE~~kLq~~l~~ 209 (308)
.+..+++.+.......+.+.+.+++.++||..++.++.+ ...++++.|+.++..
T Consensus 351 re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek 412 (1074)
T KOG0250|consen 351 REVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEK 412 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 344456666666666677777788888888888888773 233344556666654
No 156
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=69.02 E-value=72 Score=27.13 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
+++.|..+.+.+..=|-.=.++.+.|+..
T Consensus 76 el~~l~~ry~t~LellGEK~E~veEL~~D 104 (120)
T PF12325_consen 76 ELEELQQRYQTLLELLGEKSEEVEELRAD 104 (120)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 44444444444444444444444444443
No 157
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=68.80 E-value=20 Score=37.14 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=18.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 021727 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQS 186 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQa 186 (308)
+++.++.|++.+..+.++.+.+|+..+.+++.|+.|.
T Consensus 84 qLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 84 QYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444445555555555555554
No 158
>PRK14148 heat shock protein GrpE; Provisional
Probab=68.54 E-value=12 Score=34.36 Aligned_cols=39 Identities=28% Similarity=0.369 Sum_probs=24.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 021727 149 DQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSE 187 (308)
Q Consensus 149 ~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae 187 (308)
++++.+.+++++|+.++++.++.+.++.+|.+..||..+
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~ 78 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAE 78 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666777777666666666667766666543
No 159
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=68.31 E-value=53 Score=25.29 Aligned_cols=29 Identities=31% Similarity=0.344 Sum_probs=13.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 021727 179 AVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~eE~~kLq~~l 207 (308)
.+..-.|+...-.+-++|.+|.+.|++++
T Consensus 35 Rd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 35 RDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555554444443
No 160
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.25 E-value=18 Score=41.27 Aligned_cols=66 Identities=15% Similarity=0.207 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccccccccCccceeec
Q 021727 160 DLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHSDFRTVYWN 225 (308)
Q Consensus 160 kLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~s~~~~k~~~~~ 225 (308)
+++.++++....+.-++....++|++.++..+.||.|..+--.++++++.......-..++-..|-
T Consensus 974 E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K~e~~~~~l~e~~~~~~~~~ 1039 (1293)
T KOG0996|consen 974 ELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIENKLEAINGELNEIESKIKQPE 1039 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhHH
Confidence 344444444444444555566666666666666666666443466777777777777777777773
No 161
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=67.33 E-value=63 Score=34.70 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=18.5
Q ss_pred CcceecccCCCCCCCcccchhhhc
Q 021727 279 NTSIIAGATRPFPSSAYSTEARVR 302 (308)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~ 302 (308)
-++||++-.-|||.....+|+-+|
T Consensus 479 ~l~ii~~qRdrfr~~n~~~e~~~r 502 (629)
T KOG0963|consen 479 ILSVISSQRDRFRARNVELEAQVR 502 (629)
T ss_pred cchhhhcccchhhhhhhhHHHHHh
Confidence 567788888888888888877764
No 162
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=67.33 E-value=63 Score=34.63 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727 176 ETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (308)
Q Consensus 176 e~d~eaLKKQae~L~kEYDRL~eE~~kLq 204 (308)
+.++..|+-+++..++-|+.++..+++.+
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555443
No 163
>PRK14158 heat shock protein GrpE; Provisional
Probab=67.17 E-value=12 Score=34.34 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=30.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH
Q 021727 149 DQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (308)
Q Consensus 149 ~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L 189 (308)
++++.+.+++++|+.++++..+.+.++.+|.+..++..+.-
T Consensus 40 ~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE 80 (194)
T PRK14158 40 DRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKE 80 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677788888888888888888888888888765543
No 164
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=67.07 E-value=66 Score=33.69 Aligned_cols=14 Identities=21% Similarity=0.295 Sum_probs=5.4
Q ss_pred HhHHHHHHHHHHHH
Q 021727 150 QMTTLKLKLKDLES 163 (308)
Q Consensus 150 e~~~l~~evekLk~ 163 (308)
++..+..+++.|+.
T Consensus 325 ~~~~l~~Ei~~l~~ 338 (569)
T PRK04778 325 QNKELKEEIDRVKQ 338 (569)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344433333
No 165
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=66.96 E-value=41 Score=34.88 Aligned_cols=32 Identities=31% Similarity=0.341 Sum_probs=17.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhHhhccccc
Q 021727 181 ALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRL 214 (308)
Q Consensus 181 aLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~ 214 (308)
.|+.=-+|+..|-.| .|.+.++.++...++.+
T Consensus 294 rl~elreg~e~e~~r--kelE~lR~~L~kAEkel 325 (575)
T KOG4403|consen 294 RLSELREGVENETSR--KELEQLRVALEKAEKEL 325 (575)
T ss_pred hhhhhhcchhHHHHH--HHHHHHHHHHHHHHHHH
Confidence 334444455555544 56666666666655554
No 166
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=66.89 E-value=54 Score=26.12 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
.+++|-...+....|.|.|..|++-||.-+.
T Consensus 31 sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~ 61 (80)
T PF10224_consen 31 SLEALSDRVEEVKEENEKLESENEYLQQYIG 61 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667777777777777777776544
No 167
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=66.89 E-value=78 Score=31.98 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727 154 LKLKLKDLESELETKSKEAN---AAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~---kae~d~eaLKKQae~L~kEYDRL~eE~~kLq 204 (308)
+..+++.|+.++++.+.++. ..+.++..|+.+.+..+.-|+.+.+.+++.+
T Consensus 329 l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 329 LEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443332 2344556666666666666766666666544
No 168
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=66.76 E-value=21 Score=33.11 Aligned_cols=102 Identities=24% Similarity=0.215 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHH------HHHHHhHhhccccccccCccceeecccc
Q 021727 155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEEN------QNLRNQLQSLDWRLSHSDFRTVYWNAEK 228 (308)
Q Consensus 155 ~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~------~kLq~~l~~~d~~~s~~~~k~~~~~~~~ 228 (308)
+.|-++||.+.+.+..+ -.+++++|+|......-||-|+... ..|-..+...+. .|+--.--+-|..|
T Consensus 55 ~~eEe~LKs~~q~K~~~----aanL~~lr~Ql~emee~~~~llrQLPs~tEmp~Ll~dv~q~Gl-~sgL~fd~~~p~~~- 128 (211)
T COG3167 55 EAEEEELKSTYQQKAIQ----AANLEALRAQLAEMEERFDILLRQLPSDTEMPNLLADVNQAGL-SSGLTFDLFMPQPE- 128 (211)
T ss_pred HHHHHHHHHHHHHHHHH----HhchHHHHHHHHHHHHHHHHHHHhCCcccchhHHHHHHHHhhh-ccCceeeccCCCch-
Confidence 34455667666655443 2578999999999999999887543 222222221110 01111111223222
Q ss_pred ccccccchhhhhhhhhhhhhccCCcchhHHHHHHHhhhhhh
Q 021727 229 TASSTYCAAKVLDFELLTKLSMGSSSCKSLLVLAAVSSIKR 269 (308)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (308)
..|-..-|+-..+||-.+-----....+|+|.-|
T Consensus 129 -------v~k~fy~elPisi~v~G~YHdia~F~~~VasLpR 162 (211)
T COG3167 129 -------VDKEFYAELPISISVTGSYHDIAQFVSDVASLPR 162 (211)
T ss_pred -------hhhhhHhhcceEEEEcccHHHHHHHHHHHhhcce
Confidence 1244555777777776555554555677888776
No 169
>PRK14162 heat shock protein GrpE; Provisional
Probab=66.74 E-value=12 Score=34.34 Aligned_cols=42 Identities=7% Similarity=0.143 Sum_probs=29.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH
Q 021727 148 EDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (308)
Q Consensus 148 ~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L 189 (308)
.++++.+..++++|+.++++.++.+.++.+|.+..|+..+.=
T Consensus 38 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE 79 (194)
T PRK14162 38 QNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKE 79 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777888888877777777788888777765443
No 170
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=66.42 E-value=97 Score=31.86 Aligned_cols=11 Identities=18% Similarity=0.458 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q 021727 47 TVAGTVLVMLI 57 (308)
Q Consensus 47 iv~~~l~vLFl 57 (308)
|.+.++.+||+
T Consensus 54 iSA~tLailf~ 64 (499)
T COG4372 54 ISAATLAILFL 64 (499)
T ss_pred hhHHHHHHHHH
Confidence 34445555655
No 171
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=66.30 E-value=1e+02 Score=27.90 Aligned_cols=16 Identities=31% Similarity=0.302 Sum_probs=7.3
Q ss_pred HHHhhHHHHHHHHHHH
Q 021727 184 KQSEGFLFEYDRLLEE 199 (308)
Q Consensus 184 KQae~L~kEYDRL~eE 199 (308)
.+.+....+|+.+..+
T Consensus 120 ~~l~~~~~e~~~~~~~ 135 (201)
T PF12072_consen 120 EELEEREEELEELIEE 135 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344445555544433
No 172
>PRK14139 heat shock protein GrpE; Provisional
Probab=66.25 E-value=23 Score=32.26 Aligned_cols=41 Identities=15% Similarity=0.197 Sum_probs=30.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH
Q 021727 149 DQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (308)
Q Consensus 149 ~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L 189 (308)
+++..+.+++++|+.++++.++.+.++.+|.+..||..+.-
T Consensus 32 ~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE 72 (185)
T PRK14139 32 DAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQED 72 (185)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677788888888888888888888888888865443
No 173
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=66.13 E-value=95 Score=29.98 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhHHHH
Q 021727 164 ELETKSKEANAAETNAVALRKQSEGFLFE 192 (308)
Q Consensus 164 eLk~k~kel~kae~d~eaLKKQae~L~kE 192 (308)
++...+.++..++.++..++.+.+.+..+
T Consensus 204 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 232 (423)
T TIGR01843 204 ERAEAQGELGRLEAELEVLKRQIDELQLE 232 (423)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333434444444444444443333
No 174
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=66.00 E-value=57 Score=27.71 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH
Q 021727 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEY 193 (308)
Q Consensus 158 vekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEY 193 (308)
+++++.++..+-.++...+.....+.+|...+..-|
T Consensus 57 l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~ 92 (150)
T PF07200_consen 57 LEELRSQLQELYEELKELESEYQEKEQQQDELSSNY 92 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 334444444444444444444444444444443333
No 175
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=65.94 E-value=61 Score=27.40 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
.+.++|+|...+..+...|..+-+..+..+.
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~ 90 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELE 90 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666665555554
No 176
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=65.89 E-value=52 Score=37.32 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhcccc
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWR 213 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~ 213 (308)
-+..+.+++.+++....+++..+.++...+-+.+...++|+...+++..+|+..+.-.+.
T Consensus 404 aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~ 463 (1174)
T KOG0933|consen 404 AKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKR 463 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555555555555544444444433333
No 177
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=65.49 E-value=48 Score=33.50 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=16.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhc
Q 021727 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQSL 210 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~ 210 (308)
...++++...+..++.+|.++...|++++...
T Consensus 377 ~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 377 LKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444555555555555555555555543
No 178
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=64.81 E-value=55 Score=34.02 Aligned_cols=52 Identities=29% Similarity=0.353 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhh
Q 021727 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (308)
Q Consensus 158 vekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~ 209 (308)
+...+.+|+..+..|.+++.|...|+.-.+.|..|-.+...++..+++....
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~ 334 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKE 334 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666677777777777777777777777777777766655443
No 179
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=64.68 E-value=33 Score=36.76 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=27.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH
Q 021727 148 EDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (308)
Q Consensus 148 ~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L 189 (308)
..|+++.+.++|+||.++..++.||...+.+++.-+-|.+.+
T Consensus 106 ~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 106 NSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 345666777778888888877777777666665544444443
No 180
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=64.58 E-value=41 Score=28.32 Aligned_cols=48 Identities=40% Similarity=0.397 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhc
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSL 210 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~ 210 (308)
..+..|+.++...-+ ++..||.|...+..|=-+|.-|+++|+..+...
T Consensus 8 d~l~~le~~l~~l~~-------el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 8 DALDDLEQNLGVLLK-------ELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666665554 578999999999999999999999999988853
No 181
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=64.57 E-value=1.9e+02 Score=30.37 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhcc
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLD 211 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d 211 (308)
..+.+++..+...+.++..-...++.|.++-+....+++.|.+.|+.+++++....
T Consensus 101 ~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~ 156 (560)
T PF06160_consen 101 QAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHS 156 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566777777777777777888888888888899999999999998888766443
No 182
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=64.52 E-value=70 Score=37.10 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 021727 153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQN 202 (308)
Q Consensus 153 ~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~k 202 (308)
+|...+++||.+..+-..+.+.+++.+.+.|.|+.+-+.+.+.|.+.++.
T Consensus 1623 eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~ 1672 (1758)
T KOG0994|consen 1623 ELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYEL 1672 (1758)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555566667777778888887777777766555554
No 183
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=64.46 E-value=66 Score=36.64 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
.++..++-+++.+++|+.+.++.+++++++.
T Consensus 304 rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~ 334 (1141)
T KOG0018|consen 304 RLEEIEKDIETAKKDYRALKETIERLEKELK 334 (1141)
T ss_pred HHHHhhhhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444555555555555555555555555443
No 184
>PRK11281 hypothetical protein; Provisional
Probab=64.37 E-value=56 Score=37.40 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 021727 152 TTLKLKLKDLESELETKSKEANAAETNAVALRK 184 (308)
Q Consensus 152 ~~l~~evekLk~eLk~k~kel~kae~d~eaLKK 184 (308)
+..+++.++|++.++...++++.+.++++++|+
T Consensus 76 ~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 76 DRQKEETEQLKQQLAQAPAKLRQAQAELEALKD 108 (1113)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 334445556666666666666666666666655
No 185
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=64.23 E-value=1.3e+02 Score=28.46 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021727 100 LFLAFMIDRLHHYIRELRIRRKTMEAI 126 (308)
Q Consensus 100 LFL~LVI~Rl~sLI~eLa~le~~~eal 126 (308)
++|+++|-=+++-...+..-+.+.+.-
T Consensus 87 ~~lAvliaivIs~pl~l~iF~~eI~~~ 113 (301)
T PF14362_consen 87 LLLAVLIAIVISEPLELKIFEKEIDQK 113 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666665555554433
No 186
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=64.22 E-value=69 Score=26.04 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=17.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 184 KQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 184 KQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
++..+++.+-+.|.+|++.|+.+++
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777777776665
No 187
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=63.73 E-value=1.3e+02 Score=30.75 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=17.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 021727 93 ATLMGASLFLAFMIDRLHHYIRELRIRR 120 (308)
Q Consensus 93 aYISGFsLFL~LVI~Rl~sLI~eLa~le 120 (308)
..|-.|.+|+|++.+=++.-|......+
T Consensus 6 ~qlInFlIl~~lL~kfl~~Pi~~~l~~R 33 (445)
T PRK13428 6 GQLIGFAVIVFLVWRFVVPPVRRLMAAR 33 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888877666666555544433
No 188
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.52 E-value=72 Score=25.17 Aligned_cols=53 Identities=23% Similarity=0.384 Sum_probs=32.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 149 DQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 149 ~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+.|.-|.-|+++||.+-..... +...++.+-+.|..|-..|..||+.-|..+.
T Consensus 18 dTI~LLQmEieELKEknn~l~~-------e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQ-------EVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666665554444 3455566677777777788888876555543
No 189
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=63.25 E-value=33 Score=34.35 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=33.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH--HHHHHhhHHHHHHHHHHHHHHHH
Q 021727 148 EDQMTTLKLKLKDLESELETKSKEANAAETNAVA--LRKQSEGFLFEYDRLLEENQNLR 204 (308)
Q Consensus 148 ~~e~~~l~~evekLk~eLk~k~kel~kae~d~ea--LKKQae~L~kEYDRL~eE~~kLq 204 (308)
.+|+..|++|...||+|.++++.|+++-|+|... +-+..+-.+.-||++.+=-++.|
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk~R 89 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNKMR 89 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 3456666777777777777777766666666553 22222223556666665555543
No 190
>PRK04863 mukB cell division protein MukB; Provisional
Probab=63.10 E-value=70 Score=37.78 Aligned_cols=45 Identities=22% Similarity=0.241 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHH
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEEN 200 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~ 200 (308)
.++++|+.++++...++...+.+++.+..+.+.++.+.+.+.+++
T Consensus 355 ~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqL 399 (1486)
T PRK04863 355 ADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQL 399 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443344444444444444444433333
No 191
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=63.07 E-value=29 Score=35.07 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=25.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhHhhcccccccc
Q 021727 182 LRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHS 217 (308)
Q Consensus 182 LKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~s~~ 217 (308)
.+++.+.+...|..+.++.++++.++......+..+
T Consensus 373 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 373 KKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445677788888888888888888877555544444
No 192
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=62.78 E-value=63 Score=24.22 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021727 154 LKLKLKDLESELETKSK 170 (308)
Q Consensus 154 l~~evekLk~eLk~k~k 170 (308)
|..+|..|+.++.....
T Consensus 8 Ls~dVq~L~~kvdqLs~ 24 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSS 24 (56)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 193
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=62.43 E-value=80 Score=35.92 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHH
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLE 198 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~e 198 (308)
..+++|++-|.....++.+-.+..+-+|.|.......|..+..
T Consensus 488 ~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~ 530 (1195)
T KOG4643|consen 488 NQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSN 530 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555555544433
No 194
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=62.37 E-value=64 Score=24.18 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=14.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021727 149 DQMTTLKLKLKDLESELETKSKEANAAET 177 (308)
Q Consensus 149 ~e~~~l~~evekLk~eLk~k~kel~kae~ 177 (308)
.++..|..++.+|..++.....++..++.
T Consensus 10 ~dVq~L~~kvdqLs~dv~~lr~~v~~ak~ 38 (56)
T PF04728_consen 10 SDVQTLNSKVDQLSSDVNALRADVQAAKE 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554444433333
No 195
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=62.27 E-value=82 Score=34.70 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=24.3
Q ss_pred HhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhh
Q 021727 174 AAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (308)
Q Consensus 174 kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~ 209 (308)
....+++.+|||.+....+=|+|..+.+.|+.+++.
T Consensus 220 ~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~q 255 (916)
T KOG0249|consen 220 RLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQ 255 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 334566777777777777777777777776665553
No 196
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=62.27 E-value=46 Score=25.31 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHH
Q 021727 155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLL 197 (308)
Q Consensus 155 ~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~ 197 (308)
.+++...+..++..++++...|...+++.++.+++...-+.+.
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555556666666666666655553
No 197
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=61.99 E-value=44 Score=38.64 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=14.8
Q ss_pred HhhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 021727 174 AAETNAVALRKQSEGFLFEYDRLLEENQNL 203 (308)
Q Consensus 174 kae~d~eaLKKQae~L~kEYDRL~eE~~kL 203 (308)
.+..|++.|++..++++.-|-+|.+..+++
T Consensus 1264 ~a~~~LesLq~~~~~l~~~~keL~e~~~~i 1293 (1758)
T KOG0994|consen 1264 LAGKDLESLQREFNGLLTTYKELREQLEKI 1293 (1758)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555555555555554444433
No 198
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=61.89 E-value=69 Score=34.35 Aligned_cols=53 Identities=28% Similarity=0.423 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
+..++..++..++.++.++.......+....+...-...|-.|..|++.|+++
T Consensus 207 l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q 259 (617)
T PF15070_consen 207 LQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQ 259 (617)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544444444444444555556677777777766644
No 199
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=61.50 E-value=89 Score=25.74 Aligned_cols=11 Identities=9% Similarity=-0.000 Sum_probs=4.7
Q ss_pred HHHHHHHhhHH
Q 021727 180 VALRKQSEGFL 190 (308)
Q Consensus 180 eaLKKQae~L~ 190 (308)
+.|+.+.+.|+
T Consensus 51 ~~L~~eI~~L~ 61 (105)
T PRK00888 51 DQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHhh
Confidence 34444444443
No 200
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=61.49 E-value=77 Score=24.84 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=25.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhHhh
Q 021727 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~ 209 (308)
-...|-|-+-|.++|.+.+.+++++|.....
T Consensus 66 ~~~~k~~~~KL~~df~~~l~~fq~~q~~~~~ 96 (102)
T PF14523_consen 66 DRQQKLQREKLSRDFKEALQEFQKAQRRYAE 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999998877553
No 201
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=61.47 E-value=1e+02 Score=26.33 Aligned_cols=44 Identities=25% Similarity=0.253 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 160 DLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 160 kLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
++..+|+++.+ .-+..+++|.+|-+.+..+|+.|..+.++....
T Consensus 70 ~~~~eL~er~E---~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 70 EAVDELEERKE---TLELRIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444333 344578999999999999999988776665443
No 202
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=61.32 E-value=52 Score=24.59 Aligned_cols=23 Identities=13% Similarity=0.050 Sum_probs=9.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Q 021727 179 AVALRKQSEGFLFEYDRLLEENQ 201 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~eE~~ 201 (308)
.+-+++..+.+..-..+|++=|+
T Consensus 23 n~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 23 NEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 203
>PLN02678 seryl-tRNA synthetase
Probab=61.30 E-value=52 Score=33.86 Aligned_cols=31 Identities=10% Similarity=-0.033 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+...||+|.+.++.+++.+.++...+...+.
T Consensus 79 ~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iP 109 (448)
T PLN02678 79 ETKELKKEITEKEAEVQEAKAALDAKLKTIG 109 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4556777777777777777777776665554
No 204
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=61.21 E-value=1.5e+02 Score=32.33 Aligned_cols=32 Identities=9% Similarity=0.160 Sum_probs=18.2
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 177 TNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 177 ~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
++++.++.|..++..--+.+....+..+.+++
T Consensus 639 ~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 639 KELERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666777766666666655555444444433
No 205
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=61.13 E-value=42 Score=40.48 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=6.3
Q ss_pred HHHHHHhHhhcccc
Q 021727 200 NQNLRNQLQSLDWR 213 (308)
Q Consensus 200 ~~kLq~~l~~~d~~ 213 (308)
+..++.+++..+.+
T Consensus 994 ~~~l~~~l~~~eek 1007 (1930)
T KOG0161|consen 994 IRELQDDLQAEEEK 1007 (1930)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555544433
No 206
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=60.75 E-value=1.2e+02 Score=30.47 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccccccccCc
Q 021727 164 ELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHSDF 219 (308)
Q Consensus 164 eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~s~~~~ 219 (308)
+......++..++......-.-...+.+++.++.+|.++.+.+.+ +|-.|-+|+
T Consensus 274 eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme--erg~~mtD~ 327 (359)
T PF10498_consen 274 EYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME--ERGSSMTDG 327 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCCCC
Confidence 333333334333333444444444556677777777776655544 344444444
No 207
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=60.20 E-value=25 Score=37.63 Aligned_cols=83 Identities=20% Similarity=0.219 Sum_probs=51.7
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----HHHHHHhhHHHHHHHHHHHHHHHHHhHh-hcc-ccccccCc
Q 021727 147 LEDQMTTLKLKLKDLESELETKSKEANAAETNAV-----ALRKQSEGFLFEYDRLLEENQNLRNQLQ-SLD-WRLSHSDF 219 (308)
Q Consensus 147 ~~~e~~~l~~evekLk~eLk~k~kel~kae~d~e-----aLKKQae~L~kEYDRL~eE~~kLq~~l~-~~d-~~~s~~~~ 219 (308)
....++.|...|++++.+|++.+-++..++++.. .=++-.|...+-+++|.+..++|.-|.. ..| +-..---|
T Consensus 634 h~~smekl~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~l~eqi~kl~~q~~dkeenK~vALGTS 713 (759)
T KOG0981|consen 634 HEKSMEKLAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLERLEEQLKKLEIQMTDKEENKQVALGTS 713 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHHHhhhccchhhcceeecccc
Confidence 4456667888889999999888888877755421 1123445566667788887777765544 322 23333345
Q ss_pred cceeeccccc
Q 021727 220 RTVYWNAEKT 229 (308)
Q Consensus 220 k~~~~~~~~~ 229 (308)
|=||+..--|
T Consensus 714 KiNYiDPRit 723 (759)
T KOG0981|consen 714 KLNYIDPRIT 723 (759)
T ss_pred cccccCCcee
Confidence 5577755443
No 208
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=60.11 E-value=43 Score=31.22 Aligned_cols=50 Identities=26% Similarity=0.321 Sum_probs=32.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHH
Q 021727 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEE 199 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE 199 (308)
+|+.++..|.+++.++++...++..++...+..-.+-.+.++|-+.|+..
T Consensus 33 ~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqR 82 (207)
T PF05546_consen 33 EIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQR 82 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666777777777777766666666665555556666666666543
No 209
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=60.03 E-value=96 Score=27.75 Aligned_cols=6 Identities=50% Similarity=0.739 Sum_probs=2.1
Q ss_pred HHHHHH
Q 021727 161 LESELE 166 (308)
Q Consensus 161 Lk~eLk 166 (308)
++.+++
T Consensus 168 ~~~ei~ 173 (236)
T PF09325_consen 168 AENEIE 173 (236)
T ss_pred HHHHHH
Confidence 333333
No 210
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=59.82 E-value=1.4e+02 Score=29.03 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 021727 160 DLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (308)
Q Consensus 160 kLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l 207 (308)
..+.|.+...+.+++.+++..++|...++-+..-..+.+|...+..++
T Consensus 241 tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~ 288 (309)
T PF09728_consen 241 TFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKEL 288 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 355555566666666666667777777776666666666655544443
No 211
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=59.80 E-value=40 Score=28.55 Aligned_cols=46 Identities=24% Similarity=0.310 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhh
Q 021727 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (308)
Q Consensus 157 evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~ 209 (308)
.+..|+.++-..-. ++.+||+|+..+-.|=..|.=|+++|++.+.-
T Consensus 9 ~v~~le~~l~~l~~-------el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 9 QVDNLEEQLGVLLA-------ELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 34556665655444 57899999999999999999999999988875
No 212
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=59.70 E-value=59 Score=24.30 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=14.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 021727 150 QMTTLKLKLKDLESELETKSKEA 172 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~k~kel 172 (308)
|++++..++++++.++....+.|
T Consensus 5 E~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 5 EIERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666554
No 213
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=59.60 E-value=2.2e+02 Score=31.55 Aligned_cols=38 Identities=13% Similarity=-0.007 Sum_probs=18.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 021727 94 TLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSR 131 (308)
Q Consensus 94 YISGFsLFL~LVI~Rl~sLI~eLa~le~~~ealkKQa~ 131 (308)
.+.+|+-=+++++..++.--..+.........++++..
T Consensus 534 dLE~fieE~s~tLdwIls~~~SLqDv~s~~sEIK~~f~ 571 (769)
T PF05911_consen 534 DLERFIEEFSLTLDWILSNCFSLQDVSSMRSEIKKNFD 571 (769)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhhh
Confidence 55555555555555554444444444444445555433
No 214
>PRK11281 hypothetical protein; Provisional
Probab=59.47 E-value=76 Score=36.42 Aligned_cols=73 Identities=18% Similarity=0.129 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhh---ccccccccCccceeecccccc
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS---LDWRLSHSDFRTVYWNAEKTA 230 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~---~d~~~s~~~~k~~~~~~~~~~ 230 (308)
+.+.+++.++++.++++...++.+.++.+|-|.-+..-..-...-+.+++++.. ++.. -+++++.-+++|-.+
T Consensus 128 q~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~--l~~~~~~~l~ae~~~ 203 (1113)
T PRK11281 128 SRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKA--LRPSQRVLLQAEQAL 203 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc--CCHHHHHHHHHHHHH
Confidence 334444444554444444444455555555544444433333344445555543 2222 445666667666543
No 215
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=59.04 E-value=35 Score=29.91 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq~~l 207 (308)
-+++|.+|.+|+..|=+.|+.+-+.|++.+
T Consensus 39 t~~~l~~qv~gi~~eT~~Ll~K~N~L~eDv 68 (139)
T COG4768 39 TLKGLTSQVDGITHETEELLHKTNTLAEDV 68 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666655555443
No 216
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=58.91 E-value=1.6e+02 Score=29.75 Aligned_cols=27 Identities=22% Similarity=0.106 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Q 021727 105 MIDRLHHYIRELRIRRKTMEAIKNQSR 131 (308)
Q Consensus 105 VI~Rl~sLI~eLa~le~~~ealkKQa~ 131 (308)
.-.++...-.++...++..+.+.++..
T Consensus 209 l~~~l~~~~~~l~~~~a~~~~l~~~l~ 235 (498)
T TIGR03007 209 AQEELEAARLELNEAIAQRDALKRQLG 235 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555666677777777777776543
No 217
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=58.89 E-value=43 Score=30.37 Aligned_cols=43 Identities=23% Similarity=0.374 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHH
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEEN 200 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~ 200 (308)
++.|+++|+.+++..++ .......||..+..+..|-|+-.+.|
T Consensus 125 L~~eI~~L~~~i~~le~----~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 125 LEDEIKQLEKEIQRLEE----IQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555553332 33345566666666666666655544
No 218
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=58.71 E-value=77 Score=34.16 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 021727 102 LAFMIDRLHHYIRELRIRRKTMEAIKNQSR 131 (308)
Q Consensus 102 L~LVI~Rl~sLI~eLa~le~~~ealkKQa~ 131 (308)
+-|+=.|+-.+=.++...+..+++.+++..
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~ 298 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQRD 298 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445677888888888888888888887754
No 219
>PRK00106 hypothetical protein; Provisional
Probab=58.38 E-value=1.2e+02 Score=31.97 Aligned_cols=31 Identities=10% Similarity=-0.026 Sum_probs=12.5
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHHHHHHH
Q 021727 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQ 201 (308)
Q Consensus 171 el~kae~d~eaLKKQae~L~kEYDRL~eE~~ 201 (308)
+|.+.+.+++..+++.+...++++++.++.+
T Consensus 119 ~LekrE~eLe~kekeLe~reeeLee~~~~~~ 149 (535)
T PRK00106 119 NLSSKEKTLESKEQSLTDKSKHIDEREEQVE 149 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444333
No 220
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.34 E-value=1.3e+02 Score=33.63 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 153 ~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
++...+.++|..+.+.+-+++.-+.+.++|+-+-|+++.||-....+|.++.++..
T Consensus 654 ~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~ 709 (970)
T KOG0946|consen 654 ELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLD 709 (970)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666666667888888888888888888777777766654
No 221
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=58.23 E-value=1.1e+02 Score=33.74 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=14.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 021727 94 TLMGASLFLAFMIDRLHHYIRELR 117 (308)
Q Consensus 94 YISGFsLFL~LVI~Rl~sLI~eLa 117 (308)
.+.|+...+ ..|+.++.+|+.-.
T Consensus 371 ~~~g~~~~~-~~~d~vi~~ir~~~ 393 (800)
T TIGR01063 371 ILEGLLIAL-DNIDEVIALIRASQ 393 (800)
T ss_pred HHHHHHHHH-HhhhHHHHHHHhCC
Confidence 788888743 46667776666543
No 222
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=58.16 E-value=1.6e+02 Score=27.37 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=17.6
Q ss_pred HHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021727 90 LLE-ATLMGASLFLAFMIDRLHHYIRELRIRRKT 122 (308)
Q Consensus 90 y~q-aYISGFsLFL~LVI~Rl~sLI~eLa~le~~ 122 (308)
+.| +|.+|.-+. -.|-+.+-++...-++.+.+
T Consensus 88 IARAAyr~Gv~~w-~~~~d~~~~~~k~~~~~~~~ 120 (197)
T PRK12585 88 INRAAYDTGVPLA-IRIRDQLRSVKKDDIKKKKS 120 (197)
T ss_pred HHHHHHHcCCCcc-hhhHHHHHHHHhhhhhhcch
Confidence 445 688887766 44444444444444444443
No 223
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=57.90 E-value=1.6e+02 Score=27.47 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 021727 154 LKLKLKDLESELE 166 (308)
Q Consensus 154 l~~evekLk~eLk 166 (308)
+.+|+++|++|+.
T Consensus 74 l~~en~~L~~e~~ 86 (276)
T PRK13922 74 LREENEELKKELL 86 (276)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 224
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.85 E-value=48 Score=36.76 Aligned_cols=49 Identities=22% Similarity=0.318 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 158 vekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
+.+|...|....-.+.+++.+++.+.+|.+---.|.|.|..+.+++|+.
T Consensus 453 ~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~k 501 (1118)
T KOG1029|consen 453 LQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEK 501 (1118)
T ss_pred HHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333445567777777777777777777666665555444
No 225
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=57.39 E-value=1.6e+02 Score=30.40 Aligned_cols=22 Identities=14% Similarity=0.049 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHhhHHHHHHHHH
Q 021727 176 ETNAVALRKQSEGFLFEYDRLL 197 (308)
Q Consensus 176 e~d~eaLKKQae~L~kEYDRL~ 197 (308)
++.++.|+.+...|.++--++-
T Consensus 223 q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 223 QKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 226
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=57.05 E-value=54 Score=35.71 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 161 LESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 161 Lk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
|+.+.+..-+++...+.+++.++.-++.|..-|++..+.+++|.++++
T Consensus 570 Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 570 LKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344445555666677777777777777777776665544
No 227
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=56.67 E-value=1.6e+02 Score=26.92 Aligned_cols=36 Identities=22% Similarity=0.199 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccc
Q 021727 177 TNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDW 212 (308)
Q Consensus 177 ~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~ 212 (308)
.++..-++....+..+...|.+|.+.|+.++..-|+
T Consensus 157 rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 157 RQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355666777778888899999999999888876554
No 228
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=56.65 E-value=83 Score=32.79 Aligned_cols=30 Identities=13% Similarity=0.240 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 021727 105 MIDRLHHYIRELRIRRKTMEAIKNQSRGFE 134 (308)
Q Consensus 105 VI~Rl~sLI~eLa~le~~~ealkKQa~~a~ 134 (308)
++-++-.+=.++..+..+.+.+++|.+.+.
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~ 93 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQ 93 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888889999999988866554
No 229
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=56.64 E-value=61 Score=27.49 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021727 155 KLKLKDLESELETKSKE 171 (308)
Q Consensus 155 ~~evekLk~eLk~k~ke 171 (308)
+.++++.+.|++..+.+
T Consensus 31 ~~eL~~~k~el~~yk~~ 47 (128)
T PF06295_consen 31 EQELEQAKQELEQYKQE 47 (128)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455555544443
No 230
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=56.64 E-value=1.1e+02 Score=34.75 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccccccccCccceee
Q 021727 151 MTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHSDFRTVYW 224 (308)
Q Consensus 151 ~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~s~~~~k~~~~ 224 (308)
...+.+++.+++..|+..+.-+...+..-..+..|+.+++..++.-.++.+.|-..+..-++-. .+.+.++|
T Consensus 499 l~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~--d~n~~~~~ 570 (1041)
T KOG0243|consen 499 LESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRLD--DDNQEVID 570 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--cccHHHHH
Confidence 3344455555555555555555556666677888888899999888888887777666555544 34555555
No 231
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=56.53 E-value=42 Score=27.93 Aligned_cols=11 Identities=36% Similarity=0.595 Sum_probs=6.2
Q ss_pred hHHHHHHHHHH
Q 021727 24 PLRKLLIMSLD 34 (308)
Q Consensus 24 P~R~~~i~~l~ 34 (308)
|+=|+.+..++
T Consensus 9 ~iDWr~i~~iD 19 (118)
T PF13815_consen 9 PIDWRLISAID 19 (118)
T ss_pred CCcHHHHhccC
Confidence 34566665555
No 232
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=56.40 E-value=32 Score=25.65 Aligned_cols=11 Identities=18% Similarity=0.311 Sum_probs=4.5
Q ss_pred HHHHHHHHhhH
Q 021727 179 AVALRKQSEGF 189 (308)
Q Consensus 179 ~eaLKKQae~L 189 (308)
.+.|+.+.+.+
T Consensus 40 ~~~L~~ei~~l 50 (80)
T PF04977_consen 40 NEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHh
Confidence 33444444443
No 233
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=56.31 E-value=1.3e+02 Score=32.88 Aligned_cols=45 Identities=24% Similarity=0.243 Sum_probs=26.0
Q ss_pred HhHHHhHHHHHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHhhHH
Q 021727 146 ALEDQMTTLKLKLKDL---ESELETKSKEANAAETNAVALRKQSEGFL 190 (308)
Q Consensus 146 ~~~~e~~~l~~evekL---k~eLk~k~kel~kae~d~eaLKKQae~L~ 190 (308)
++.+||-.|.+.|.-| +.|-+..+.|+++-+.+.+-|+.|.+...
T Consensus 101 elEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 101 ELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554433 34555555566666667777777776553
No 234
>PHA01750 hypothetical protein
Probab=56.30 E-value=67 Score=25.07 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=8.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Q 021727 181 ALRKQSEGFLFEYDRLLEENQNL 203 (308)
Q Consensus 181 aLKKQae~L~kEYDRL~eE~~kL 203 (308)
.|++|.+.+..--|.+.+....+
T Consensus 46 NL~~ei~~~kikqDnl~~qv~ei 68 (75)
T PHA01750 46 NLKTEIEELKIKQDELSRQVEEI 68 (75)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333333333333333333333
No 235
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=56.30 E-value=1.5e+02 Score=32.49 Aligned_cols=90 Identities=21% Similarity=0.247 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHhHhhccccccccCccceeecccccc
Q 021727 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYD-------RLLEENQNLRNQLQSLDWRLSHSDFRTVYWNAEKTA 230 (308)
Q Consensus 158 vekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYD-------RL~eE~~kLq~~l~~~d~~~s~~~~k~~~~~~~~~~ 230 (308)
+.+++..++....++.+.++.++-++.|......|-+ |+-+||.+|+..+....+.-| .- .
T Consensus 561 ~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~-------~~-----s 628 (698)
T KOG0978|consen 561 AQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES-------GA-----S 628 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------cc-----c
Confidence 3334444444444444444555555555554444443 445555555555554444332 11 0
Q ss_pred ccccchhhhhhhhhhhhhccCCcchhHHH
Q 021727 231 SSTYCAAKVLDFELLTKLSMGSSSCKSLL 259 (308)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (308)
+-.|-+--+=.|+-..+||.-.+--|.-.
T Consensus 629 ~d~~L~EElk~yK~~LkCs~Cn~R~Kd~v 657 (698)
T KOG0978|consen 629 ADEVLAEELKEYKELLKCSVCNTRWKDAV 657 (698)
T ss_pred ccHHHHHHHHHHHhceeCCCccCchhhHH
Confidence 11222334556777888877665555443
No 236
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.17 E-value=99 Score=24.41 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=12.5
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHH
Q 021727 147 LEDQMTTLKLKLKDLESELETKSK 170 (308)
Q Consensus 147 ~~~e~~~l~~evekLk~eLk~k~k 170 (308)
+.-|++.|+++...|..|......
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~ 46 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQH 46 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHH
Confidence 334455555555556555554443
No 237
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=55.88 E-value=65 Score=23.68 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=13.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727 179 AVALRKQSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~eE~~kLq~ 205 (308)
+..|..+-+.|..+++.|..+++.|..
T Consensus 35 ~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 35 VEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555554443
No 238
>PRK14161 heat shock protein GrpE; Provisional
Probab=55.71 E-value=44 Score=30.24 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 021727 151 MTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEG 188 (308)
Q Consensus 151 ~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~ 188 (308)
.+...+++++|+.++++.++.+.++.+|.+..|+.++.
T Consensus 21 ~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~k 58 (178)
T PRK14161 21 VETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEK 58 (178)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777776666666777777777665543
No 239
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=55.60 E-value=79 Score=34.40 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=19.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 180 VALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 180 eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
|.+|.....++.|+++|..|.....++..
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~ 569 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIR 569 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777665555444
No 240
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=55.42 E-value=14 Score=32.47 Aligned_cols=10 Identities=30% Similarity=0.444 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 021727 156 LKLKDLESEL 165 (308)
Q Consensus 156 ~evekLk~eL 165 (308)
.|+.+++.|+
T Consensus 47 ~Ei~~l~~E~ 56 (161)
T PF04420_consen 47 KEILQLKREL 56 (161)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333343333
No 241
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.34 E-value=98 Score=34.53 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhcc
Q 021727 152 TTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLD 211 (308)
Q Consensus 152 ~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d 211 (308)
..+..++..+|.++..+-.+.+.+..+++.|+++..++.+|-.+...+..+|+.+...++
T Consensus 809 ~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~ 868 (970)
T KOG0946|consen 809 QELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGN 868 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhh
Confidence 334456667777777777777777888999999999999988888887777776665444
No 242
>PRK09343 prefoldin subunit beta; Provisional
Probab=55.30 E-value=1.3e+02 Score=25.33 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727 177 TNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 177 ~d~eaLKKQae~L~kEYDRL~eE~~kLq~ 205 (308)
.+++.|.+|.+.+.+.+..+......+..
T Consensus 85 ~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 85 LRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777776666666665554444433
No 243
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=55.26 E-value=28 Score=29.23 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=17.4
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHH
Q 021727 144 IKALEDQMTTLKLKLKDLESELETK 168 (308)
Q Consensus 144 ~~~~~~e~~~l~~evekLk~eLk~k 168 (308)
.....+||..|+-|++.|+..+.+.
T Consensus 31 ~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 31 LAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667777877887787777753
No 244
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=55.26 E-value=2.4e+02 Score=29.55 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH
Q 021727 159 KDLESELETKSKEANAAETNAVALRKQSEGF 189 (308)
Q Consensus 159 ekLk~eLk~k~kel~kae~d~eaLKKQae~L 189 (308)
.+++..+....++-..++..++.++++..++
T Consensus 400 ~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~i 430 (569)
T PRK04778 400 EKLSEMLQGLRKDELEAREKLERYRNKLHEI 430 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444433333333334444444444333
No 245
>PRK00106 hypothetical protein; Provisional
Probab=55.20 E-value=1.2e+02 Score=31.93 Aligned_cols=44 Identities=18% Similarity=0.219 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHH
Q 021727 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQ 201 (308)
Q Consensus 158 vekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~ 201 (308)
+++-+.+|++++++|...+.+++..+++.+...++|+.+.++..
T Consensus 113 LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~ 156 (535)
T PRK00106 113 LDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKK 156 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666667777777777777777777777777766654
No 246
>PRK11519 tyrosine kinase; Provisional
Probab=55.16 E-value=99 Score=33.32 Aligned_cols=28 Identities=14% Similarity=0.360 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 021727 104 FMIDRLHHYIRELRIRRKTMEAIKNQSR 131 (308)
Q Consensus 104 LVI~Rl~sLI~eLa~le~~~ealkKQa~ 131 (308)
|+=.|+-.+=.+|...+..+++.+.+..
T Consensus 271 fL~~ql~~l~~~L~~aE~~l~~fr~~~~ 298 (719)
T PRK11519 271 FLAQQLPEVRSRLDVAENKLNAFRQDKD 298 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4455666666666666666666666543
No 247
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=55.16 E-value=95 Score=23.87 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=13.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 021727 179 AVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~eE~~kLq~~l 207 (308)
...|+.|..++..|=+.|.+.++..+.++
T Consensus 23 N~~Lr~q~~~~~~ER~~L~ekne~Ar~rv 51 (65)
T TIGR02449 23 NRLLRAQEKTWREERAQLLEKNEQARQKV 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544444433
No 248
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=55.08 E-value=1.1e+02 Score=24.53 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhHHHHHHH-------HHHHHHHHHHhHh
Q 021727 178 NAVALRKQSEGFLFEYDR-------LLEENQNLRNQLQ 208 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDR-------L~eE~~kLq~~l~ 208 (308)
+++-||.+-..+..|.+. |..|+++|+.+..
T Consensus 26 EieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 26 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344444444444444443 5555555554443
No 249
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=54.99 E-value=59 Score=34.44 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=31.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 150 QMTTLKLKLKDLESELETKSKEANAAE-------TNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~k~kel~kae-------~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+++.+.+++++|+.++++.+.++...+ ..+..+-++.+.++.+.+.+.++-++|..+++
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~ 629 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLE 629 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666665555553221 02444455555555555555555555555443
No 250
>PRK14155 heat shock protein GrpE; Provisional
Probab=54.93 E-value=32 Score=31.93 Aligned_cols=41 Identities=12% Similarity=0.167 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHH
Q 021727 152 TTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFE 192 (308)
Q Consensus 152 ~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kE 192 (308)
+.+.+++++|+.++++.++.+.++.+|.+..||..+.-..+
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~ 56 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMND 56 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888888888888876654433
No 251
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=54.83 E-value=1.5e+02 Score=25.92 Aligned_cols=15 Identities=40% Similarity=0.534 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHH
Q 021727 190 LFEYDRLLEENQNLR 204 (308)
Q Consensus 190 ~kEYDRL~eE~~kLq 204 (308)
++...||..|++.++
T Consensus 81 e~~i~rL~~ENe~lR 95 (135)
T TIGR03495 81 EQRIERLKRENEDLR 95 (135)
T ss_pred HHHHHHHHHcCHHHH
Confidence 444566777777765
No 252
>PLN02320 seryl-tRNA synthetase
Probab=54.83 E-value=75 Score=33.31 Aligned_cols=31 Identities=13% Similarity=0.054 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+...||++...++.+...+.++.+.+-..+.
T Consensus 138 ~~k~lk~~i~~le~~~~~~~~~l~~~~l~iP 168 (502)
T PLN02320 138 EGKNLKEGLVTLEEDLVKLTDELQLEAQSIP 168 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455556666666666666555555444433
No 253
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=54.53 E-value=2.3e+02 Score=28.12 Aligned_cols=66 Identities=26% Similarity=0.371 Sum_probs=51.7
Q ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHH--------------HHHHHHHHHHHHHhH
Q 021727 142 EEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFE--------------YDRLLEENQNLRNQL 207 (308)
Q Consensus 142 ~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kE--------------YDRL~eE~~kLq~~l 207 (308)
.+-+....+++.++.+++.|+.++...-+|......|.++.|..+.-|+.| .|.|..|+--|+.++
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl 205 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERL 205 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHH
Confidence 344556667778888888999999999888888899999999999999888 466777765454443
No 254
>smart00338 BRLZ basic region leucin zipper.
Probab=54.51 E-value=48 Score=24.40 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=10.3
Q ss_pred HHHHHHHHhhHHHHHHHHHH
Q 021727 179 AVALRKQSEGFLFEYDRLLE 198 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~e 198 (308)
.+.|+.+...+..|++.|.+
T Consensus 42 n~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 42 NERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554443
No 255
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=54.28 E-value=28 Score=26.68 Aligned_cols=11 Identities=9% Similarity=-0.015 Sum_probs=4.4
Q ss_pred HHHHHHHHhhH
Q 021727 179 AVALRKQSEGF 189 (308)
Q Consensus 179 ~eaLKKQae~L 189 (308)
.+.|+.+...+
T Consensus 47 n~~L~~ei~~l 57 (85)
T TIGR02209 47 WRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 256
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=54.22 E-value=2e+02 Score=31.03 Aligned_cols=65 Identities=22% Similarity=0.421 Sum_probs=45.7
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH------HHHHHHHHHH--------HHHHHHhHh
Q 021727 144 IKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF------LFEYDRLLEE--------NQNLRNQLQ 208 (308)
Q Consensus 144 ~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L------~kEYDRL~eE--------~~kLq~~l~ 208 (308)
-.....++++|+.++..++++|+..+.++...+...+-+..+..+. ...|++-+++ +.+|+++++
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~ 159 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVE 159 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456668888888888999999998888888877777666555553 4566644333 345777666
No 257
>PRK14160 heat shock protein GrpE; Provisional
Probab=54.08 E-value=44 Score=31.10 Aligned_cols=30 Identities=20% Similarity=0.179 Sum_probs=15.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
++.++++.+.+...|-|+..|.++.++...
T Consensus 70 l~~l~~e~~elkd~~lR~~AefeN~RKR~~ 99 (211)
T PRK14160 70 NKKLENELEALKDRLLRTVAEYDNYRKRTA 99 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555566666555554433
No 258
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=53.99 E-value=87 Score=34.33 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHhhHHHHHHH
Q 021727 176 ETNAVALRKQSEGFLFEYDR 195 (308)
Q Consensus 176 e~d~eaLKKQae~L~kEYDR 195 (308)
+.-++..++|++++.++..+
T Consensus 571 ~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 571 QEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33445556666665555543
No 259
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=53.84 E-value=45 Score=32.17 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 176 ETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 176 e~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+++.+.++.+.+.|..|..+..+-+++-++.++
T Consensus 52 ~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~ 84 (298)
T PF11262_consen 52 KKEKERLKNLIDKLPEELKKHQEHVEKVKKRLQ 84 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777666666666555
No 260
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=53.80 E-value=1.9e+02 Score=30.32 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQN 202 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~k 202 (308)
..+..|..-+...++.|...+++.++|+-|.+.....|-+|.++|..
T Consensus 390 k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~ 436 (527)
T PF15066_consen 390 KTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMT 436 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34566777777778888888889999999999999999999999854
No 261
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.80 E-value=38 Score=32.76 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=23.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 021727 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRK 184 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKK 184 (308)
.+..|++||..|++.|.++++.+....+.+..||-
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKa 260 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKA 260 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCc
Confidence 45667888888888888888776554444444443
No 262
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=53.03 E-value=1.4e+02 Score=32.98 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=18.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 021727 90 LLEATLMGASLFLAFMIDRLHHYIR 114 (308)
Q Consensus 90 y~qaYISGFsLFL~LVI~Rl~sLI~ 114 (308)
-+.-.|-.|++.|-.|+..-.++..
T Consensus 534 dLE~fieE~s~tLdwIls~~~SLqD 558 (769)
T PF05911_consen 534 DLERFIEEFSLTLDWILSNCFSLQD 558 (769)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHH
Confidence 3455678888888888888777755
No 263
>PRK14143 heat shock protein GrpE; Provisional
Probab=53.00 E-value=74 Score=30.12 Aligned_cols=40 Identities=20% Similarity=0.300 Sum_probs=30.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 021727 149 DQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEG 188 (308)
Q Consensus 149 ~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~ 188 (308)
+++..+..++++|+.+++..+..+.++.+|.+.+||..+.
T Consensus 67 ~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 67 ARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677778888888888888888888888888887654
No 264
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=52.94 E-value=1.4e+02 Score=32.68 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=16.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Q 021727 94 TLMGASLFLAFMIDRLHHYIREL 116 (308)
Q Consensus 94 YISGFsLFL~LVI~Rl~sLI~eL 116 (308)
++.||...+. .|+.++.+|+.-
T Consensus 384 ~l~g~~~~~~-~id~vI~iir~s 405 (742)
T PRK05561 384 ILEGLLIAFL-NIDEVIRIIRES 405 (742)
T ss_pred HHHHHHHHHh-hHHHHHHHHhcC
Confidence 8999877666 477777777653
No 265
>PRK14140 heat shock protein GrpE; Provisional
Probab=52.83 E-value=33 Score=31.47 Aligned_cols=40 Identities=10% Similarity=0.206 Sum_probs=28.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 021727 149 DQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEG 188 (308)
Q Consensus 149 ~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~ 188 (308)
++++.+..++++++.++...++.+.++.+|.+..||..+.
T Consensus 37 ~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~r 76 (191)
T PRK14140 37 ELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQK 76 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566677777887877777777777777777776543
No 266
>PF15058 Speriolin_N: Speriolin N terminus
Probab=52.51 E-value=41 Score=31.14 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccccccccCccceeecccccc
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHSDFRTVYWNAEKTA 230 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~s~~~~k~~~~~~~~~~ 230 (308)
+.+.||||. ||..|++.|+..+...-.--+.-+...||+-.--++
T Consensus 20 ENeeLKKlV--------rLirEN~eLksaL~ea~~~~~~r~~~~vf~pp~pA~ 64 (200)
T PF15058_consen 20 ENEELKKLV--------RLIRENHELKSALGEACAEPSQRQGNDVFLPPSPAY 64 (200)
T ss_pred hhHHHHHHH--------HHHHHHHHHHHHHHHhhcccccccCCceecCCCCCC
Confidence 456667764 688999999888654444444456678998543333
No 267
>PRK14145 heat shock protein GrpE; Provisional
Probab=52.44 E-value=30 Score=31.87 Aligned_cols=39 Identities=28% Similarity=0.309 Sum_probs=26.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 021727 149 DQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSE 187 (308)
Q Consensus 149 ~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae 187 (308)
.+++.+.+++++++.+++.....+.++.+|.+..|+.++
T Consensus 45 ~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~ 83 (196)
T PRK14145 45 DEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTE 83 (196)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777777777777777544
No 268
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=52.43 E-value=1.5e+02 Score=29.07 Aligned_cols=10 Identities=40% Similarity=0.498 Sum_probs=4.0
Q ss_pred HHHHHHHHHh
Q 021727 119 RRKTMEAIKN 128 (308)
Q Consensus 119 le~~~ealkK 128 (308)
++..++..++
T Consensus 143 L~k~le~~~k 152 (294)
T COG1340 143 LRKELEDAKK 152 (294)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 269
>PRK15396 murein lipoprotein; Provisional
Probab=52.41 E-value=76 Score=25.18 Aligned_cols=12 Identities=17% Similarity=0.277 Sum_probs=5.2
Q ss_pred HHHHHHHHHhhH
Q 021727 178 NAVALRKQSEGF 189 (308)
Q Consensus 178 d~eaLKKQae~L 189 (308)
|+.+++..++.-
T Consensus 47 dv~~~~~~~~~a 58 (78)
T PRK15396 47 DVNAMRSDVQAA 58 (78)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 270
>PHA03011 hypothetical protein; Provisional
Probab=52.35 E-value=26 Score=29.48 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq~ 205 (308)
|..+++.|.++|-..|+.|++||+.+.+
T Consensus 58 D~Nai~e~ldeL~~qYN~L~dEYn~i~N 85 (120)
T PHA03011 58 DINAIIEILDELIAQYNELLDEYNLIEN 85 (120)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666677777777777777765443
No 271
>PRK15396 murein lipoprotein; Provisional
Probab=52.34 E-value=90 Score=24.76 Aligned_cols=10 Identities=10% Similarity=0.292 Sum_probs=3.8
Q ss_pred hHHHHHHHHH
Q 021727 177 TNAVALRKQS 186 (308)
Q Consensus 177 ~d~eaLKKQa 186 (308)
.++++-|..+
T Consensus 53 ~~~~~a~~eA 62 (78)
T PRK15396 53 SDVQAAKDDA 62 (78)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 272
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.30 E-value=1.4e+02 Score=34.50 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHH
Q 021727 155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEEN 200 (308)
Q Consensus 155 ~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~ 200 (308)
..++++|+.+++....+++..+.+++-++...+.++.+|+++..+.
T Consensus 887 e~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1311)
T TIGR00606 887 EEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSK 932 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 3344445555555554444445555555555555555555544443
No 273
>PRK14151 heat shock protein GrpE; Provisional
Probab=52.17 E-value=68 Score=28.92 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEY 193 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEY 193 (308)
+.+++++|+.++++.++.+.++.+|.+..||..+.=..+.
T Consensus 25 l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~ 64 (176)
T PRK14151 25 LTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKA 64 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888877888888888888888766544333
No 274
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=52.09 E-value=1.8e+02 Score=26.19 Aligned_cols=96 Identities=11% Similarity=0.117 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 021727 105 MIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRK 184 (308)
Q Consensus 105 VI~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKK 184 (308)
++..-..+=.++...+...+.+.+++..+-... ..+-.............++..|+.++......+.+.+.++..|+.
T Consensus 49 ~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g--~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~ 126 (221)
T PF04012_consen 49 VMANQKRLERKLDEAEEEAEKWEKQAELALAAG--REDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEA 126 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555554332211 111111222222233445555666666555555555555666666
Q ss_pred HHhhHHHHHHHHHHHHHH
Q 021727 185 QSEGFLFEYDRLLEENQN 202 (308)
Q Consensus 185 Qae~L~kEYDRL~eE~~k 202 (308)
+.+.+..+-+.|...++.
T Consensus 127 kl~e~k~k~~~l~ar~~~ 144 (221)
T PF04012_consen 127 KLEELKSKREELKARENA 144 (221)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666555555443
No 275
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=51.58 E-value=18 Score=29.89 Aligned_cols=19 Identities=32% Similarity=0.338 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhHHHHHHHH
Q 021727 178 NAVALRKQSEGFLFEYDRL 196 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL 196 (308)
+++.+++|.+.+..+++.+
T Consensus 24 ~l~~~~~~~~~~~~~l~~~ 42 (144)
T PF04350_consen 24 NLEELKKQLEQLEQQLEEL 42 (144)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555433
No 276
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=51.48 E-value=1.5e+02 Score=31.36 Aligned_cols=11 Identities=9% Similarity=0.066 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 021727 55 MLISSVYNIMM 65 (308)
Q Consensus 55 LFlDSirrm~K 65 (308)
+|+|=+-+-++
T Consensus 232 ~lfdY~~~~Y~ 242 (622)
T COG5185 232 LLFDYFTESYK 242 (622)
T ss_pred HHHHHHHHHHH
Confidence 44454444433
No 277
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=51.41 E-value=2.1e+02 Score=26.87 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=11.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 021727 96 MGASLFLAFMIDRLHHYIRELRI 118 (308)
Q Consensus 96 SGFsLFL~LVI~Rl~sLI~eLa~ 118 (308)
.-|.+++|++-+=++.=|.....
T Consensus 13 InFlILv~lL~~fl~kPi~~~l~ 35 (250)
T PRK14474 13 INFLILVYLLRRFLYKPIIQVMK 35 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666555555554444433
No 278
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=51.41 E-value=90 Score=30.58 Aligned_cols=52 Identities=23% Similarity=0.189 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 157 evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+|+-||..|+..++.+.....+..--.+..+-+...+|.|..|...|+.++.
T Consensus 113 qvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 113 QVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555444444444444433333444444444444444444444444
No 279
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=51.40 E-value=87 Score=33.45 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 157 evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
|+++|+.+|+....++...+.+++.++.+...+..|..+...+.+.++++
T Consensus 329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~ 378 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEE 378 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444333
No 280
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=51.38 E-value=22 Score=28.36 Aligned_cols=34 Identities=35% Similarity=0.342 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L 189 (308)
.++++|+.+++..+.++...+..++++++|.+-|
T Consensus 70 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 70 PELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566666666666666666666777777776543
No 281
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=51.38 E-value=2.4e+02 Score=27.39 Aligned_cols=13 Identities=31% Similarity=0.506 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q 021727 190 LFEYDRLLEENQN 202 (308)
Q Consensus 190 ~kEYDRL~eE~~k 202 (308)
..+|.+|..|.+-
T Consensus 277 ~~~~~~L~re~~~ 289 (362)
T TIGR01010 277 TADYQRLVLQNEL 289 (362)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555443
No 282
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=51.30 E-value=74 Score=29.91 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=12.5
Q ss_pred HHhHHHhHHHHHHHHHHHHHHH
Q 021727 145 KALEDQMTTLKLKLKDLESELE 166 (308)
Q Consensus 145 ~~~~~e~~~l~~evekLk~eLk 166 (308)
.....|+++++.|+|++|..+.
T Consensus 119 ~~lr~e~EklkndlEk~ks~lr 140 (220)
T KOG3156|consen 119 ANLRAENEKLKNDLEKLKSSLR 140 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666665544
No 283
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=51.28 E-value=2.3e+02 Score=27.82 Aligned_cols=80 Identities=18% Similarity=0.148 Sum_probs=62.6
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccccccccCccceee
Q 021727 145 KALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHSDFRTVYW 224 (308)
Q Consensus 145 ~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~s~~~~k~~~~ 224 (308)
..+..||..+.+.-+.|+..-+....++..-+..+.-|..|...-.+--++|..|...++..++..-.-.+..|..=.++
T Consensus 63 s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~ 142 (307)
T PF10481_consen 63 SALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPC 142 (307)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccc
Confidence 34556666777667777776666777777777888888999998889999999999999999998877777777665555
No 284
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=51.10 E-value=1.3e+02 Score=28.52 Aligned_cols=33 Identities=30% Similarity=0.391 Sum_probs=23.1
Q ss_pred HHH--HHHHh-HHHHH------HHHHHHHHHHHHHHHHHHHH
Q 021727 90 LLE--ATLMG-ASLFL------AFMIDRLHHYIRELRIRRKT 122 (308)
Q Consensus 90 y~q--aYISG-FsLFL------~LVI~Rl~sLI~eLa~le~~ 122 (308)
|++ +||.| |+||+ +|+=.|+-...+.|+++++.
T Consensus 70 ~~~It~~llgs~slymfrwal~~lye~r~~r~~~~L~kLra~ 111 (251)
T COG5415 70 YLVITALLLGSGSLYMFRWALTKLYEFRNNRRLRKLAKLRAI 111 (251)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 555 69999 88775 36666777777777777663
No 285
>PRK14161 heat shock protein GrpE; Provisional
Probab=50.67 E-value=39 Score=30.52 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=24.2
Q ss_pred HhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 174 AAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 174 kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
.++.+++.+++|.+.+...|-|+..|.++.++...
T Consensus 23 ~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ 57 (178)
T PRK14161 23 TANPEITALKAEIEELKDKLIRTTAEIDNTRKRLE 57 (178)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345566777777777778888888877776655
No 286
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=50.55 E-value=1.2e+02 Score=30.57 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 021727 106 IDRLHHYIRELRIRRKTMEAIKN 128 (308)
Q Consensus 106 I~Rl~sLI~eLa~le~~~ealkK 128 (308)
+.++..+=.+...+..+.+.++.
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~ 51 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQA 51 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555544
No 287
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=50.34 E-value=1.1e+02 Score=23.42 Aligned_cols=46 Identities=13% Similarity=0.123 Sum_probs=29.2
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHH
Q 021727 145 KALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFL 190 (308)
Q Consensus 145 ~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~ 190 (308)
.....||..|++++..+..|=.........|..-+++|-.+..++.
T Consensus 17 ~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 17 ERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3455666666666666666666666666666666777766655543
No 288
>PRK14154 heat shock protein GrpE; Provisional
Probab=50.34 E-value=76 Score=29.54 Aligned_cols=39 Identities=21% Similarity=0.188 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHH
Q 021727 152 TTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFL 190 (308)
Q Consensus 152 ~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~ 190 (308)
+.+.+++++|+.++++.++.+.++.+|.+..||..+.-.
T Consensus 55 ~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~ 93 (208)
T PRK14154 55 EKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREK 93 (208)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777777777655443
No 289
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=49.95 E-value=64 Score=32.71 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 021727 106 IDRLHHYIRELRIRRKTMEAIKNQ 129 (308)
Q Consensus 106 I~Rl~sLI~eLa~le~~~ealkKQ 129 (308)
+.++..+=.+...++.+.+.++++
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~ 50 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAE 50 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555443
No 290
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=49.91 E-value=2.8e+02 Score=29.79 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 021727 107 DRLHHYIRELRIRRKTMEAIKN 128 (308)
Q Consensus 107 ~Rl~sLI~eLa~le~~~ealkK 128 (308)
..+..+-.++..++.+...+..
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~ 309 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLST 309 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666655544443
No 291
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=49.78 E-value=1.3e+02 Score=23.94 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHH
Q 021727 151 MTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLE 198 (308)
Q Consensus 151 ~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~e 198 (308)
.+.+..++..|+..|...-..+...+.+.+-|+.+-+-|+..-+.|+.
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666677777777766666555555566666555555555555543
No 292
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.72 E-value=1.1e+02 Score=35.36 Aligned_cols=16 Identities=13% Similarity=0.082 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 021727 113 IRELRIRRKTMEAIKN 128 (308)
Q Consensus 113 I~eLa~le~~~ealkK 128 (308)
-.++..++..++.+..
T Consensus 798 ~~ei~~l~~qie~l~~ 813 (1311)
T TIGR00606 798 QMELKDVERKIAQQAA 813 (1311)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 293
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=49.57 E-value=32 Score=27.30 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=11.3
Q ss_pred hHHHhHHHHHHHHHHHHHHHH
Q 021727 147 LEDQMTTLKLKLKDLESELET 167 (308)
Q Consensus 147 ~~~e~~~l~~evekLk~eLk~ 167 (308)
+.+||..|+.++++|+.||++
T Consensus 5 i~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 5 IQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334555555566655555553
No 294
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=49.40 E-value=54 Score=25.62 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=11.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh
Q 021727 150 QMTTLKLKLKDLESELETKSKEANAA 175 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~k~kel~ka 175 (308)
+|-.++.++..|+.+++.+++.+..+
T Consensus 44 eNieLKve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 44 ENIELKVEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444554444444444333
No 295
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=49.34 E-value=2.1e+02 Score=26.19 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=5.2
Q ss_pred HhhhHHHHHHHH
Q 021727 174 AAETNAVALRKQ 185 (308)
Q Consensus 174 kae~d~eaLKKQ 185 (308)
.++.+++..|.+
T Consensus 153 ~Ae~~I~~ek~~ 164 (204)
T PRK09174 153 EAEARIAAIKAK 164 (204)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 296
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=49.28 E-value=1.1e+02 Score=28.34 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=22.8
Q ss_pred HhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727 174 AAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 174 kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~ 205 (308)
+++.++...-.+++.-..-||.+++|+++++.
T Consensus 115 k~~k~~~~a~~~leKAK~~Y~~~c~e~Ekar~ 146 (234)
T cd07652 115 RAEKKVQDAEAAAEKAKARYDSLADDLERVKT 146 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555556666667779999999998764
No 297
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=49.05 E-value=2.6e+02 Score=30.63 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
|..+.++..+.++.........+.+++.++.+...++.|-.+|..+...+++...
T Consensus 571 Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 571 LQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4444555555555555555666677888888888888888888887776654433
No 298
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=48.93 E-value=1.2e+02 Score=28.46 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 021727 159 KDLESELETKSKEANAAETNAVALRKQSEG 188 (308)
Q Consensus 159 ekLk~eLk~k~kel~kae~d~eaLKKQae~ 188 (308)
++.+.|.+.+..+|++++.|..-++|++.+
T Consensus 115 K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~ 144 (223)
T cd07605 115 KDYKKEYKQKREDLDKARSELKKLQKKSQK 144 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344455555555555555555555555543
No 299
>PLN02678 seryl-tRNA synthetase
Probab=48.88 E-value=67 Score=33.08 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 021727 105 MIDRLHHYIRELRIRRKTMEAIKNQ 129 (308)
Q Consensus 105 VI~Rl~sLI~eLa~le~~~ealkKQ 129 (308)
.|.++..+=.+...++.+.+.++.+
T Consensus 31 ~id~il~ld~~~r~l~~~~e~lr~e 55 (448)
T PLN02678 31 LVDEVIALDKEWRQRQFELDSLRKE 55 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667766666666666666666554
No 300
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=48.80 E-value=1.4e+02 Score=34.30 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=8.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHH
Q 021727 179 AVALRKQSEGFLFEYDRLLEE 199 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~eE 199 (308)
+..+..+.+++..+.....++
T Consensus 687 l~~l~~~l~~~~~e~~~~~~~ 707 (1201)
T PF12128_consen 687 LNELEEELKQLKQELEELLEE 707 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444333333
No 301
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.75 E-value=2.8e+02 Score=31.13 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHH
Q 021727 160 DLESELETKSKEANAAETNAVALRKQSEGFLFEYDR 195 (308)
Q Consensus 160 kLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDR 195 (308)
.++.++.+.++|.++...+++.++.|.+.|..+|..
T Consensus 546 ~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~ 581 (1118)
T KOG1029|consen 546 AIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNS 581 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 455555555555555555666666666666555553
No 302
>smart00338 BRLZ basic region leucin zipper.
Probab=48.68 E-value=86 Score=23.05 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=14.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 179 AVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
+..|..+-+.|..+.+.|..|+..|.++
T Consensus 35 ~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 35 VEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555444
No 303
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=48.56 E-value=75 Score=26.58 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=8.0
Q ss_pred HHHHHHhhHHHHHHHH
Q 021727 181 ALRKQSEGFLFEYDRL 196 (308)
Q Consensus 181 aLKKQae~L~kEYDRL 196 (308)
-|.|.-|-|++.|..|
T Consensus 103 lmekkfe~lekkyesl 118 (122)
T PF05325_consen 103 LMEKKFETLEKKYESL 118 (122)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4445555555555444
No 304
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=48.54 E-value=2.5e+02 Score=31.87 Aligned_cols=95 Identities=15% Similarity=0.232 Sum_probs=52.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHH-------HHHhHHHhHHHHHHHHHHHHHHH
Q 021727 94 TLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEE-------IKALEDQMTTLKLKLKDLESELE 166 (308)
Q Consensus 94 YISGFsLFL~LVI~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e-------~~~~~~e~~~l~~evekLk~eLk 166 (308)
.+-||..-+. .|+.++.+|+.-..-.+..+.++..-. .++ .+.+ .....-|..++.+|.++|+++++
T Consensus 390 i~eGl~~a~~-~id~vi~~ir~s~~~~~a~~~l~~~f~-~s~----~qa~aIl~mrL~~Lt~le~~kl~~E~~eL~~~I~ 463 (957)
T PRK13979 390 IVEGFIKAIG-IMDEIIKTIRSSKSKKDASENLIEKFG-FTD----EQAEAILELMLYRLTGLEIVAFEKEYKELEKLIK 463 (957)
T ss_pred HHHHHHHHHH-hHHHHHHHHHcCCCHHHHHHHHHHHhC-CCH----HHHHHHHhCcHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 7889888775 899999998866544444444443211 100 0000 01122344455566666666666
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhHHHHHH
Q 021727 167 TKSKEANAAETNAVALRKQSEGFLFEYD 194 (308)
Q Consensus 167 ~k~kel~kae~d~eaLKKQae~L~kEYD 194 (308)
..+.=|...+.=.+.++++...+.+.|-
T Consensus 464 ~l~~iL~~~~~l~~vi~~EL~eik~kyg 491 (957)
T PRK13979 464 KLTKILSSEKELLKVIKKELKEVKEKYG 491 (957)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 6655444444445566666666666664
No 305
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=48.52 E-value=1.3e+02 Score=29.56 Aligned_cols=28 Identities=11% Similarity=0.102 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021727 97 GASLFLAFMIDRLHHYIRELRIRRKTME 124 (308)
Q Consensus 97 GFsLFL~LVI~Rl~sLI~eLa~le~~~e 124 (308)
-|.=.-..++.|=++|+.++.+.+++.-
T Consensus 190 ~F~~l~~cL~dREvaLl~EmdkVK~EAm 217 (302)
T PF07139_consen 190 TFAELQSCLMDREVALLAEMDKVKAEAM 217 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566789999999999999887643
No 306
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=48.37 E-value=1.2e+02 Score=29.67 Aligned_cols=11 Identities=18% Similarity=0.235 Sum_probs=4.2
Q ss_pred HHHHHHHHhcc
Q 021727 120 RKTMEAIKNQS 130 (308)
Q Consensus 120 e~~~ealkKQa 130 (308)
+++.+++..++
T Consensus 5 ~~~~~~~~~~~ 15 (378)
T TIGR01554 5 KEQREEIVAEI 15 (378)
T ss_pred HHHHHHHHHHH
Confidence 33333343333
No 307
>PRK14163 heat shock protein GrpE; Provisional
Probab=48.32 E-value=45 Score=31.16 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH
Q 021727 151 MTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (308)
Q Consensus 151 ~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L 189 (308)
.+.+.+++++|+.+++...+.+.++.+|.+.+||..+.-
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE 80 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERD 80 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888888888888888888888765443
No 308
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=48.12 E-value=3.4e+02 Score=28.20 Aligned_cols=41 Identities=24% Similarity=0.333 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH
Q 021727 153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEY 193 (308)
Q Consensus 153 ~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEY 193 (308)
++-+++++++++=+....++...+...+.+-.+.....+||
T Consensus 194 ~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey 234 (447)
T KOG2751|consen 194 RLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREY 234 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333333333333333333444444444
No 309
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=48.01 E-value=30 Score=32.97 Aligned_cols=20 Identities=35% Similarity=0.263 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhHHHHHHHHH
Q 021727 178 NAVALRKQSEGFLFEYDRLL 197 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~ 197 (308)
+.++|+.|.+.+.+|-+.+.
T Consensus 230 en~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 230 ENEALRTQVEQLKKELATLR 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666665555444
No 310
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=47.56 E-value=1.5e+02 Score=25.01 Aligned_cols=26 Identities=27% Similarity=0.183 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhcccccc
Q 021727 190 LFEYDRLLEENQNLRNQLQSLDWRLS 215 (308)
Q Consensus 190 ~kEYDRL~eE~~kLq~~l~~~d~~~s 215 (308)
++|-.....|++.|+..+..|.++++
T Consensus 41 tkEL~~Ak~e~~~Lr~dl~aG~~RL~ 66 (125)
T PF03245_consen 41 TKELADAKAEIDRLRADLAAGNKRLR 66 (125)
T ss_pred HHHHHHHHhhHHHHHHHHHcCCceEE
Confidence 44445555666778888888887763
No 311
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=47.40 E-value=48 Score=32.44 Aligned_cols=35 Identities=26% Similarity=0.210 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHH
Q 021727 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLE 198 (308)
Q Consensus 157 evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~e 198 (308)
|-|.|..|++..++ ..+.||.|+..+.+|.+.|.+
T Consensus 249 e~E~l~ge~~~Le~-------rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 249 EKEALLGELEGLEK-------RNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554443 568888888888888877653
No 312
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=47.29 E-value=2.2e+02 Score=32.70 Aligned_cols=74 Identities=23% Similarity=0.238 Sum_probs=35.7
Q ss_pred HhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhcccccc-ccCccceeeccccccccccchhhhhhhhhhhhh
Q 021727 174 AAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLS-HSDFRTVYWNAEKTASSTYCAAKVLDFELLTKL 248 (308)
Q Consensus 174 kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~s-~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (308)
.++.+...++++-+....+.+.+..+.++++.+++.-+..++ ..||=--|++.++-. -.=.-+||||=++|-..
T Consensus 494 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~-We~tIGKVid~eLL~r~ 568 (1201)
T PF12128_consen 494 ELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPG-WEQTIGKVIDEELLYRT 568 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCc-HHHHhHhhCCHHHhcCC
Confidence 333333344444333344444443344445555555555554 445545566555221 12235799998876543
No 313
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=47.24 E-value=84 Score=30.64 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=16.3
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 021727 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQN 202 (308)
Q Consensus 171 el~kae~d~eaLKKQae~L~kEYDRL~eE~~k 202 (308)
+.++.+.+...++|+.+.+.+|+|.+..||.+
T Consensus 37 e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k 68 (309)
T PF09728_consen 37 EMKRLQKQLKKLQKKQEQLQKEKDQLQSELSK 68 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555555555555543
No 314
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=47.20 E-value=2.7e+02 Score=29.05 Aligned_cols=56 Identities=21% Similarity=0.076 Sum_probs=44.6
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHH
Q 021727 144 IKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEE 199 (308)
Q Consensus 144 ~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE 199 (308)
...+..++..++..+..|+...++...+..+....++++.-|..-.++.|-|..+-
T Consensus 306 ~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~ 361 (502)
T KOG0982|consen 306 DQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDI 361 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677778888888888888888888888888999999999888888776654
No 315
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=47.11 E-value=4.6e+02 Score=30.78 Aligned_cols=61 Identities=18% Similarity=0.099 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh--hccccccc
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ--SLDWRLSH 216 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~--~~d~~~s~ 216 (308)
++++.+...+..+..++..++...+.++.+.+.....+++...+.+...+.+. ..+.-|+.
T Consensus 340 ~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~el~~~a~~~~~~~ 402 (1353)
T TIGR02680 340 ADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARAAERAGLSP 402 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34444444445555555555666666666666666666666666555555444 33344433
No 316
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=46.97 E-value=2.7e+02 Score=29.44 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021727 106 IDRLHHYIRELRIRRKT 122 (308)
Q Consensus 106 I~Rl~sLI~eLa~le~~ 122 (308)
-.|+-.++.++.....+
T Consensus 419 ~~RI~eLt~qlQ~adSK 435 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSK 435 (518)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555444433
No 317
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=46.76 E-value=2.2e+02 Score=29.81 Aligned_cols=19 Identities=21% Similarity=0.111 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHhhHHHHHH
Q 021727 176 ETNAVALRKQSEGFLFEYD 194 (308)
Q Consensus 176 e~d~eaLKKQae~L~kEYD 194 (308)
+.+.+-++||.++|.+-|+
T Consensus 454 eqe~ek~~kqiekLK~kh~ 472 (488)
T PF06548_consen 454 EQENEKAKKQIEKLKRKHK 472 (488)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555566555555554
No 318
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=46.62 E-value=36 Score=39.61 Aligned_cols=16 Identities=38% Similarity=0.434 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHHHHHH
Q 021727 42 PVVVKTVAGTVLVMLI 57 (308)
Q Consensus 42 ~~~~~iv~~~l~vLFl 57 (308)
|..++.+...+++|+.
T Consensus 832 P~~Vk~~meavciLlg 847 (1395)
T KOG3595|consen 832 PHAVKLVMEAVCILLG 847 (1395)
T ss_pred cHHHHHHHHHHHHHhc
Confidence 5566666666666555
No 319
>PF14282 FlxA: FlxA-like protein
Probab=46.60 E-value=1.6e+02 Score=24.10 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=28.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHhhHHHHHHHHHHHH
Q 021727 149 DQMTTLKLKLKDLESELETKSKE----ANAAETNAVALRKQSEGFLFEYDRLLEEN 200 (308)
Q Consensus 149 ~e~~~l~~evekLk~eLk~k~ke----l~kae~d~eaLKKQae~L~kEYDRL~eE~ 200 (308)
..++.|.+.++.|+.+|+..... -+....-.+.|..|+..|+...-++..+.
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777655441 11122334566666666666665554443
No 320
>PRK14147 heat shock protein GrpE; Provisional
Probab=46.27 E-value=94 Score=27.89 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L 189 (308)
+..++++|+.++++.+..+.++.+|.+..+|..+.-
T Consensus 23 l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE 58 (172)
T PRK14147 23 LKAEVESLRSEIALVKADALRERADLENQRKRIARD 58 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777778888888765443
No 321
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=46.21 E-value=83 Score=30.85 Aligned_cols=17 Identities=18% Similarity=0.345 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021727 156 LKLKDLESELETKSKEA 172 (308)
Q Consensus 156 ~evekLk~eLk~k~kel 172 (308)
.||++||.+|....+++
T Consensus 89 tEI~eLksQL~RMrEDW 105 (305)
T PF15290_consen 89 TEIDELKSQLARMREDW 105 (305)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46667777776666543
No 322
>PRK14153 heat shock protein GrpE; Provisional
Probab=45.98 E-value=51 Score=30.33 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 021727 153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSE 187 (308)
Q Consensus 153 ~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae 187 (308)
.+..++++|+.++++.++.+.++.+|.+.+||..+
T Consensus 37 ~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~ 71 (194)
T PRK14153 37 TADSETEKCREEIESLKEQLFRLAAEFDNFRKRTA 71 (194)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555443
No 323
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=45.94 E-value=2.1e+02 Score=31.74 Aligned_cols=8 Identities=25% Similarity=0.231 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 021727 179 AVALRKQS 186 (308)
Q Consensus 179 ~eaLKKQa 186 (308)
+..|++.+
T Consensus 394 i~~Lq~ki 401 (775)
T PF10174_consen 394 INVLQKKI 401 (775)
T ss_pred HHHHHHHH
Confidence 33333333
No 324
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=45.90 E-value=3.4e+02 Score=29.28 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=8.5
Q ss_pred HhhhhhhcccccCCC
Q 021727 263 AVSSIKRRKVRTDSD 277 (308)
Q Consensus 263 ~~~~~~~~~~~~~~~ 277 (308)
.+-..-++++|+.+|
T Consensus 444 ~~~~~l~~~i~~~~~ 458 (726)
T PRK09841 444 LARAMLRRGVEAPEQ 458 (726)
T ss_pred HHHHHHhcCCCCHHH
Confidence 344455667776554
No 325
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=45.88 E-value=1.9e+02 Score=25.92 Aligned_cols=10 Identities=30% Similarity=0.600 Sum_probs=5.3
Q ss_pred ecccCCCCCC
Q 021727 283 IAGATRPFPS 292 (308)
Q Consensus 283 ~~~~~~~~~~ 292 (308)
..+..+|||.
T Consensus 119 ~~~~~~PwP~ 128 (188)
T PF10018_consen 119 SGDFFRPWPQ 128 (188)
T ss_pred cccccCCCCC
Confidence 3445566664
No 326
>PF13166 AAA_13: AAA domain
Probab=45.82 E-value=2.4e+02 Score=29.73 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=12.2
Q ss_pred hhhhccCCcchhHHHHHHH
Q 021727 245 LTKLSMGSSSCKSLLVLAA 263 (308)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~ 263 (308)
...||=|--+|=+|+-..|
T Consensus 498 ~~~LSEGEk~~iAf~yFla 516 (712)
T PF13166_consen 498 AKILSEGEKRAIAFAYFLA 516 (712)
T ss_pred cCccCHHHHHHHHHHHHHH
Confidence 3678888777766654433
No 327
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=45.81 E-value=1.6e+02 Score=31.52 Aligned_cols=41 Identities=17% Similarity=0.116 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccccccc
Q 021727 176 ETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSH 216 (308)
Q Consensus 176 e~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~s~ 216 (308)
-.++..++.+.+.+..|.-.-.+.|.+|...+....+..+|
T Consensus 446 ~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~R 486 (594)
T PF05667_consen 446 LQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNR 486 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 34555666666666666655555566666666655555443
No 328
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=45.75 E-value=1e+02 Score=30.91 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727 155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 155 ~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~ 205 (308)
.+++++++.++++.+.++.+.. ..++|.+.++...+.+.++.++++.
T Consensus 248 ~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~ 294 (406)
T PF02388_consen 248 QEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEE 294 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444332222 3334444444444444444444443
No 329
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=45.74 E-value=3.4e+02 Score=33.08 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHH
Q 021727 161 LESELETKSKEANAAETNAVALRKQS 186 (308)
Q Consensus 161 Lk~eLk~k~kel~kae~d~eaLKKQa 186 (308)
+..+|-.....+++++.++.+||+.-
T Consensus 729 ~s~eL~~a~~k~~~le~ev~~LKqE~ 754 (1822)
T KOG4674|consen 729 LSQELLSANEKLEKLEAELSNLKQEK 754 (1822)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555544443
No 330
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=45.67 E-value=1.3e+02 Score=22.86 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH
Q 021727 157 KLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (308)
Q Consensus 157 evekLk~eLk~k~kel~kae~d~eaLKKQae~L 189 (308)
++++++..+...+......+.+++.+-+|.+.+
T Consensus 14 ~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 14 KLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444433333334444445555555444
No 331
>PRK14160 heat shock protein GrpE; Provisional
Probab=45.62 E-value=1.4e+02 Score=27.77 Aligned_cols=37 Identities=27% Similarity=0.241 Sum_probs=19.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 021727 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQS 186 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQa 186 (308)
++..+.+++++|+.+++.....+.++.+|.+..||..
T Consensus 62 e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~ 98 (211)
T PRK14160 62 ENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRT 98 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555543
No 332
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=45.33 E-value=72 Score=22.59 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq~~l 207 (308)
+.++|+.+-+.|.+|=+.|..|...|...+
T Consensus 13 ~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 13 SYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555555555555555555555444
No 333
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=45.17 E-value=3.6e+02 Score=28.12 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=25.9
Q ss_pred HHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727 172 ANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 172 l~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~ 205 (308)
+...+.+++.|+++.+.+.++|..+..+..+.+.
T Consensus 341 l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~ 374 (563)
T TIGR00634 341 LDDSDESLEALEEEVDKLEEELDKAAVALSLIRR 374 (563)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444667899999999999999988877765543
No 334
>PRK02119 hypothetical protein; Provisional
Probab=45.12 E-value=1.4e+02 Score=23.03 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=12.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 021727 179 AVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~eE~~kLq~~l 207 (308)
++.|-+..-..+++-|+|..+...|.+++
T Consensus 25 ie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 25 LEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444
No 335
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=45.10 E-value=94 Score=26.01 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHH
Q 021727 155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGFLF 191 (308)
Q Consensus 155 ~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~k 191 (308)
+++++..++.++...+++--.++..++|.|..|.+++
T Consensus 84 kkdleaankrve~q~ekiflmekkfe~lekkyeslnk 120 (122)
T PF05325_consen 84 KKDLEAANKRVESQAEKIFLMEKKFETLEKKYESLNK 120 (122)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhc
Confidence 3344444444444444444445556666666665543
No 336
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=45.10 E-value=1.9e+02 Score=24.38 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=13.3
Q ss_pred HHHHhhhHHHHHHHHHhhHHH------HHHHHHHH
Q 021727 171 EANAAETNAVALRKQSEGFLF------EYDRLLEE 199 (308)
Q Consensus 171 el~kae~d~eaLKKQae~L~k------EYDRL~eE 199 (308)
++..++.+++.||.+.+.-.. |||.|.+.
T Consensus 89 ~i~~~k~~ie~lk~~L~~ak~~r~~k~eyd~La~~ 123 (139)
T PF05615_consen 89 EIEQAKKEIEELKEELEEAKRVRQNKEEYDALAKK 123 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333 55555544
No 337
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=45.03 E-value=1.7e+02 Score=25.63 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=17.0
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhh
Q 021727 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (308)
Q Consensus 171 el~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~ 209 (308)
+|-..+..++.+-.++..-...|+.| +.+..++..
T Consensus 53 ~Ll~eq~~L~~~ae~I~~~L~yF~~L----d~itr~Ln~ 87 (157)
T PF04136_consen 53 QLLEEQTRLEELAEEISEKLQYFEEL----DPITRRLNS 87 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhH----HHHHHHHcC
Confidence 33334444555555555555555443 344444443
No 338
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=44.84 E-value=1.6e+02 Score=26.98 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=23.4
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhh
Q 021727 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (308)
Q Consensus 171 el~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~ 209 (308)
+..+..+++...-++.+...+.|+.+..|.+..+.++..
T Consensus 113 ~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~ 151 (251)
T cd07653 113 EGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEK 151 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555566666666677777776666655543
No 339
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=44.84 E-value=2.7e+02 Score=26.09 Aligned_cols=89 Identities=16% Similarity=0.134 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 021727 105 MIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRK 184 (308)
Q Consensus 105 VI~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKK 184 (308)
+|-+-..+=.++...+...+.+..++..+=..+. .+-.... -.+...|+..++..+..+..+...++.|++
T Consensus 50 ~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~--E~LAr~a-------l~~~~~le~~~~~~~~~~~~~~~~~~~l~~ 120 (225)
T COG1842 50 AIARQKQLERKLEEAQARAEKLEEKAELALQAGN--EDLAREA-------LEEKQSLEDLAKALEAELQQAEEQVEKLKK 120 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666666666554322111 0011111 123445555555555555555566677777
Q ss_pred HHhhHHHHHHHHHHHHHH
Q 021727 185 QSEGFLFEYDRLLEENQN 202 (308)
Q Consensus 185 Qae~L~kEYDRL~eE~~k 202 (308)
+...|..-|..+-..++-
T Consensus 121 ~~~~Le~Ki~e~~~~~~~ 138 (225)
T COG1842 121 QLAALEQKIAELRAKKEA 138 (225)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777766666666554
No 340
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=44.48 E-value=1.7e+02 Score=23.69 Aligned_cols=45 Identities=18% Similarity=0.235 Sum_probs=26.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHH
Q 021727 149 DQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYD 194 (308)
Q Consensus 149 ~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYD 194 (308)
+++..|.+||+-|+.+++.= -++.+-..+..-|+.|...++.-|+
T Consensus 24 ~e~~~L~eEI~~Lr~qve~n-Pevtr~A~EN~rL~ee~rrl~~f~~ 68 (86)
T PF12711_consen 24 EENEALKEEIQLLREQVEHN-PEVTRFAMENIRLREELRRLQSFYV 68 (86)
T ss_pred HHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666555522 1344445556677777777777664
No 341
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=44.43 E-value=1.4e+02 Score=22.65 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=13.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
++.|-...-..+++-|+|......|.+++.
T Consensus 20 ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 20 IEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555555555555554444
No 342
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=44.34 E-value=2.8e+02 Score=26.23 Aligned_cols=59 Identities=31% Similarity=0.389 Sum_probs=30.8
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhh
Q 021727 145 KALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (308)
Q Consensus 145 ~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~ 209 (308)
+...+++..|...+.++|..++..+.. +-+-..-.-+....|..+|.+-|..|+.|++.
T Consensus 195 k~le~~k~~Le~~ia~~k~K~e~~e~r------~~E~r~ieEkk~~eei~fLk~tN~qLKaQLeg 253 (259)
T KOG4001|consen 195 KVLEDKKKELELKIAQLKKKLETDEIR------SEEEREIEEKKMKEEIEFLKETNRQLKAQLEG 253 (259)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444555555555555543321 11111111223456667788888889988873
No 343
>PRK14153 heat shock protein GrpE; Provisional
Probab=44.25 E-value=75 Score=29.22 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhh
Q 021727 176 ETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (308)
Q Consensus 176 e~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~ 209 (308)
+.+++.+++|++.+...|-|+..|.++.++....
T Consensus 39 ~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~k 72 (194)
T PRK14153 39 DSETEKCREEIESLKEQLFRLAAEFDNFRKRTAR 72 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777888888888888888887766653
No 344
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=44.22 E-value=3.1e+02 Score=31.44 Aligned_cols=44 Identities=11% Similarity=0.064 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727 161 LESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (308)
Q Consensus 161 Lk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq 204 (308)
.-..++..++++....++++.+|++++..++.-.+..++...+|
T Consensus 309 ~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q 352 (1072)
T KOG0979|consen 309 KFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQ 352 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555556666666666666655555444443333
No 345
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=43.84 E-value=52 Score=30.91 Aligned_cols=12 Identities=33% Similarity=0.708 Sum_probs=7.8
Q ss_pred HHHHHHHHcch-h
Q 021727 13 MALIMVLLFKT-P 24 (308)
Q Consensus 13 mav~lLLvLPl-P 24 (308)
++++.+-++|+ |
T Consensus 120 ~~v~a~~lFPlWP 132 (224)
T PF03839_consen 120 VGVIAICLFPLWP 132 (224)
T ss_pred HHHHHHHhhhcCh
Confidence 34456677887 6
No 346
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=43.78 E-value=1.7e+02 Score=23.51 Aligned_cols=44 Identities=20% Similarity=0.117 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHH
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLL 197 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~ 197 (308)
+.+.+.+|..|....+.+...+..+.++|.-....|..-.++-.
T Consensus 29 lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~ 72 (96)
T PF08647_consen 29 LEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSS 72 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Confidence 44555566666666555555555555555555555544444333
No 347
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=43.60 E-value=1.5e+02 Score=22.79 Aligned_cols=15 Identities=7% Similarity=0.259 Sum_probs=6.6
Q ss_pred HHHHHHHHHhccccc
Q 021727 119 RRKTMEAIKNQSRGF 133 (308)
Q Consensus 119 le~~~ealkKQa~~a 133 (308)
+++...+++...+.+
T Consensus 3 Lea~~~~Lr~rLd~~ 17 (69)
T PF14197_consen 3 LEAEIATLRNRLDSL 17 (69)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444554443333
No 348
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=43.33 E-value=65 Score=30.90 Aligned_cols=15 Identities=47% Similarity=0.556 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhHhh
Q 021727 195 RLLEENQNLRNQLQS 209 (308)
Q Consensus 195 RL~eE~~kLq~~l~~ 209 (308)
.+..|+++|++.+..
T Consensus 95 ~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 95 NLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHhcC
Confidence 356666666666553
No 349
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=43.33 E-value=4.5e+02 Score=28.30 Aligned_cols=62 Identities=23% Similarity=0.303 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccc--ccchHHHHHhHHHhHHHHHHHHHHHHHHHH
Q 021727 106 IDRLHHYIRELRIRRKTMEAIKNQSRGFEDGK--AASSEEIKALEDQMTTLKLKLKDLESELET 167 (308)
Q Consensus 106 I~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~--~~~~~e~~~~~~e~~~l~~evekLk~eLk~ 167 (308)
-..--..+.+.-.++.++..++.|......-. .+.+.......++++.|.++++.|..+++.
T Consensus 42 ~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqa 105 (617)
T PF15070_consen 42 KEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQA 105 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566666666666544322110 111222223444445555555555544443
No 350
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=43.30 E-value=2.4e+02 Score=25.07 Aligned_cols=96 Identities=17% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 021727 106 IDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQ 185 (308)
Q Consensus 106 I~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQ 185 (308)
+.++-.=..+|..-...-..+.++++ .....-.+....+...+...++.|+.+.+.....++........+..|
T Consensus 52 ~~~L~~d~e~L~~q~~~ek~~r~~~e------~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~ 125 (158)
T PF09744_consen 52 LELLREDNEQLETQYEREKELRKQAE------EELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEER 125 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchh
Q ss_pred HhhHHHHHHHHHHHHHHHHHhH
Q 021727 186 SEGFLFEYDRLLEENQNLRNQL 207 (308)
Q Consensus 186 ae~L~kEYDRL~eE~~kLq~~l 207 (308)
=..+.++|+++.+.|.++-...
T Consensus 126 e~~l~~e~~~l~er~~e~l~~~ 147 (158)
T PF09744_consen 126 EAELKKEYNRLHERERELLRKL 147 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 351
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=43.24 E-value=99 Score=32.76 Aligned_cols=19 Identities=5% Similarity=-0.032 Sum_probs=7.0
Q ss_pred HHHHHHHHhhHHHHHHHHH
Q 021727 179 AVALRKQSEGFLFEYDRLL 197 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~ 197 (308)
.++++++.+.+..++..|.
T Consensus 607 ~~~~~~~l~~~~~~w~~l~ 625 (638)
T PRK10636 607 QASAKSGLEECEMAWLEAQ 625 (638)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 352
>PLN02320 seryl-tRNA synthetase
Probab=43.03 E-value=91 Score=32.70 Aligned_cols=15 Identities=33% Similarity=0.565 Sum_probs=9.3
Q ss_pred hhhhhhhhhccCCcch
Q 021727 240 LDFELLTKLSMGSSSC 255 (308)
Q Consensus 240 ~~~~~~~~~~~~~~~~ 255 (308)
+||+..++.| |+.-+
T Consensus 212 fdf~~aakvs-G~~f~ 226 (502)
T PLN02320 212 FDFDAAAEVS-GSKFY 226 (502)
T ss_pred ccccchhhcC-CCeeE
Confidence 5677666666 65554
No 353
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=42.94 E-value=1.1e+02 Score=24.58 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHcch------hHHHHHHHHHHHH
Q 021727 3 QLLFTVMFSEMALIMVLLFKT------PLRKLLIMSLDRV 36 (308)
Q Consensus 3 sLVF~lL~~Emav~lLLvLPl------P~R~~~i~~l~~~ 36 (308)
+++-..+|+=++..-+||+|. -.||.....+.+.
T Consensus 14 ~l~vl~~y~~l~~~YLlVvP~~l~~wm~~RWy~~~~~Er~ 53 (81)
T PF10716_consen 14 TLLVLLAYAALAGLYLLVVPLILYFWMNKRWYVMSSFERL 53 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888899999999997 2688887666654
No 354
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=42.90 E-value=1e+02 Score=23.04 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhHHHHHHHHH
Q 021727 178 NAVALRKQSEGFLFEYDRLL 197 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~ 197 (308)
.+.++|+|-+.+..+-+++-
T Consensus 15 ~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 15 SINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544444443
No 355
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=42.89 E-value=27 Score=36.46 Aligned_cols=10 Identities=40% Similarity=0.717 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 021727 157 KLKDLESELE 166 (308)
Q Consensus 157 evekLk~eLk 166 (308)
++++|++||+
T Consensus 32 kie~L~kql~ 41 (489)
T PF11853_consen 32 KIEALKKQLE 41 (489)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 356
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=42.89 E-value=3e+02 Score=29.38 Aligned_cols=23 Identities=9% Similarity=0.167 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc
Q 021727 110 HHYIRELRIRRKTMEAIKNQSRG 132 (308)
Q Consensus 110 ~sLI~eLa~le~~~ealkKQa~~ 132 (308)
..+-.++-+++++.+.+++..+.
T Consensus 109 a~~e~ei~kl~~e~~elr~~~~~ 131 (546)
T KOG0977|consen 109 AKLEIEITKLREELKELRKKLEK 131 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 44444555556666555555443
No 357
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=42.78 E-value=1.5e+02 Score=27.88 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHhc
Q 021727 115 ELRIRRKTMEAIKNQ 129 (308)
Q Consensus 115 eLa~le~~~ealkKQ 129 (308)
++...+++++++..|
T Consensus 81 ~l~~a~a~l~~~~~~ 95 (334)
T TIGR00998 81 ALAKAEANLAALVRQ 95 (334)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555544444
No 358
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=42.71 E-value=2.3e+02 Score=24.61 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHH
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFL 190 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~ 190 (308)
.-+++|+.|+..++. ++..||++.+.+.
T Consensus 94 ~~~~kLe~e~~~Kds-------ei~~Lr~~L~~~~ 121 (131)
T PF04859_consen 94 IVVKKLEAELRAKDS-------EIDRLREKLDELN 121 (131)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 345566666665554 4566666544443
No 359
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=42.59 E-value=1.6e+02 Score=22.87 Aligned_cols=8 Identities=25% Similarity=0.480 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 021727 102 LAFMIDRL 109 (308)
Q Consensus 102 L~LVI~Rl 109 (308)
+..++.++
T Consensus 17 l~~~l~~l 24 (90)
T PF06103_consen 17 LIKVLKKL 24 (90)
T ss_pred HHHHHHHH
Confidence 33333333
No 360
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=42.53 E-value=1.6e+02 Score=24.89 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 021727 155 KLKLKDLESELE 166 (308)
Q Consensus 155 ~~evekLk~eLk 166 (308)
+.++++.+.++.
T Consensus 38 k~el~~yk~~V~ 49 (128)
T PF06295_consen 38 KQELEQYKQEVN 49 (128)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 361
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=42.47 E-value=2.1e+02 Score=32.68 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHH
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEEN 200 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~ 200 (308)
+..+.++.+++.+.++...-+.-.+.|+++.+.+...|+....+.
T Consensus 255 ~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~ 299 (1072)
T KOG0979|consen 255 QAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQREL 299 (1072)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHH
Confidence 344455555555555554444455555555555555555544443
No 362
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=42.47 E-value=1.9e+02 Score=26.70 Aligned_cols=53 Identities=9% Similarity=0.059 Sum_probs=26.9
Q ss_pred HHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccccccccCccceeec
Q 021727 173 NAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHSDFRTVYWN 225 (308)
Q Consensus 173 ~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~s~~~~k~~~~~ 225 (308)
.++.++...+-++.+...+.|+..+.|.+.++++....+.-.+..+-.|+--.
T Consensus 109 ~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~~~ke~eK~~~K 161 (239)
T cd07647 109 KRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSGAQPKEAEKLKKK 161 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 33333444444555555666777776666665555444333333344444433
No 363
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=42.07 E-value=3e+02 Score=26.27 Aligned_cols=88 Identities=23% Similarity=0.347 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------Hh
Q 021727 114 RELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQ------SE 187 (308)
Q Consensus 114 ~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQ------ae 187 (308)
.++...++..+++.++.+... .........+.+......+.+..|+..++...+.+......+..-+.| .+
T Consensus 204 k~~~~~~~k~e~~e~e~~~l~---e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~~~~~e~e~~l~~k~~eq~~~l~e 280 (297)
T PF02841_consen 204 KEIEEEQAKAEAAEKEKEKLE---EKQKEQEQMLEQQERSYEEHIKQLKEKMEEEREQLLQEQERLLEQKLQEQEELLKE 280 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHH
Q 021727 188 GFLFEYDRLLEENQNLR 204 (308)
Q Consensus 188 ~L~kEYDRL~eE~~kLq 204 (308)
|++.+.+++..|.+.|+
T Consensus 281 ~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 281 GFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp T-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC
No 364
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=41.77 E-value=4e+02 Score=32.52 Aligned_cols=102 Identities=8% Similarity=0.163 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc----cccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021727 101 FLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDG----KAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAE 176 (308)
Q Consensus 101 FL~LVI~Rl~sLI~eLa~le~~~ealkKQa~~a~~~----~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae 176 (308)
|..-+=.++-+....+-.++.....+.++...+... .+++.+.......++..+..+++.+.....+....+...+
T Consensus 952 ~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k 1031 (1822)
T KOG4674|consen 952 TRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQ 1031 (1822)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666655565555443321 1112222333444555566666666666666666666666
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHH
Q 021727 177 TNAVALRKQSEGFLFEYDRLLEENQN 202 (308)
Q Consensus 177 ~d~eaLKKQae~L~kEYDRL~eE~~k 202 (308)
.|++..-++..-.+..|++=+-+|..
T Consensus 1032 ~dl~~~~~~~~~a~~~Ye~el~~ha~ 1057 (1822)
T KOG4674|consen 1032 NDLKTETEQLRKAQSKYESELVQHAD 1057 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666667788766666644
No 365
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=41.64 E-value=3.6e+02 Score=26.66 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=6.1
Q ss_pred hhhhhcccccCC
Q 021727 265 SSIKRRKVRTDS 276 (308)
Q Consensus 265 ~~~~~~~~~~~~ 276 (308)
-..-.+++++..
T Consensus 418 ~e~ld~~i~s~~ 429 (444)
T TIGR03017 418 AELMDRRVRSAD 429 (444)
T ss_pred HHHHhccCCCHH
Confidence 344455565543
No 366
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.64 E-value=1.3e+02 Score=31.45 Aligned_cols=48 Identities=25% Similarity=0.386 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 152 TTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 152 ~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+.++.++-+|+.++..- ...+-=++.|.+...|+.+.++++.|++++.
T Consensus 472 g~~~revrdlE~qI~~E---------~~k~~l~slEkl~~Dyqairqen~~L~~~iR 519 (521)
T KOG1937|consen 472 GALKREVRDLESQIYVE---------EQKQYLKSLEKLHQDYQAIRQENDQLFSEIR 519 (521)
T ss_pred chHHHHHHHHHHHHhHH---------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555531 1244456788899999999999999988753
No 367
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=41.57 E-value=2.8e+02 Score=25.39 Aligned_cols=12 Identities=33% Similarity=0.733 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 021727 155 KLKLKDLESELE 166 (308)
Q Consensus 155 ~~evekLk~eLk 166 (308)
+-+|+.|+.++.
T Consensus 118 ~~kI~~L~~~in 129 (181)
T PF04645_consen 118 RLKISSLQKEIN 129 (181)
T ss_pred HHHHHHHHHHhh
Confidence 333333333333
No 368
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=41.46 E-value=2.5e+02 Score=32.19 Aligned_cols=53 Identities=30% Similarity=0.365 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727 153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 153 ~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~ 205 (308)
.+..|++.++.+++++..++++-+.++...+-|.+.+..+|..+..+++.++.
T Consensus 415 ~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~ 467 (1200)
T KOG0964|consen 415 ILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQD 467 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888888888888889999999999998888888887777653
No 369
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=41.43 E-value=1.5e+02 Score=34.05 Aligned_cols=30 Identities=7% Similarity=-0.051 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 021727 153 TLKLKLKDLESELETKSKEANAAETNAVAL 182 (308)
Q Consensus 153 ~l~~evekLk~eLk~k~kel~kae~d~eaL 182 (308)
..+++.+++++.++..-++++..+++++++
T Consensus 62 ~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~ 91 (1109)
T PRK10929 62 GSLERAKQYQQVIDNFPKLSAELRQQLNNE 91 (1109)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 333444455555555444444444444443
No 370
>KOG4052 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.24 E-value=31 Score=31.32 Aligned_cols=23 Identities=43% Similarity=0.700 Sum_probs=21.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHH
Q 021727 177 TNAVALRKQSEGFLFEYDRLLEE 199 (308)
Q Consensus 177 ~d~eaLKKQae~L~kEYDRL~eE 199 (308)
.++-+||+|+|++..||..+.+|
T Consensus 145 vevt~lk~qce~lleeyed~i~e 167 (190)
T KOG4052|consen 145 VEVTALKQQCESLLEEYEDLIEE 167 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999988
No 371
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=41.23 E-value=78 Score=33.49 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=5.8
Q ss_pred CcceecccCCCCC
Q 021727 279 NTSIIAGATRPFP 291 (308)
Q Consensus 279 ~~~~~~~~~~~~~ 291 (308)
.+.|.-+-..|.|
T Consensus 326 G~~i~F~~~~~~P 338 (555)
T TIGR03545 326 GEDYDFKDDNPYP 338 (555)
T ss_pred CceEEccCCCCCC
Confidence 3444444444444
No 372
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=41.18 E-value=63 Score=30.98 Aligned_cols=12 Identities=25% Similarity=0.202 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 021727 155 KLKLKDLESELE 166 (308)
Q Consensus 155 ~~evekLk~eLk 166 (308)
.+|+++|+.|+.
T Consensus 72 ~~EN~~Lr~e~~ 83 (283)
T TIGR00219 72 EYENYKLRQELL 83 (283)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 373
>PRK11519 tyrosine kinase; Provisional
Probab=41.12 E-value=4.9e+02 Score=28.11 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=12.5
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 021727 177 TNAVALRKQSEGFLFEYDRLLEENQNL 203 (308)
Q Consensus 177 ~d~eaLKKQae~L~kEYDRL~eE~~kL 203 (308)
.+...|+-|.+-.+.-|+.|+...+++
T Consensus 370 ~~~~~L~Re~~~~~~lY~~lL~r~~e~ 396 (719)
T PRK11519 370 QEIVRLTRDVESGQQVYMQLLNKQQEL 396 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444455555444443
No 374
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=41.09 E-value=3.7e+02 Score=29.61 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=7.5
Q ss_pred HHHHHHHHHhhHHHHH
Q 021727 178 NAVALRKQSEGFLFEY 193 (308)
Q Consensus 178 d~eaLKKQae~L~kEY 193 (308)
-++..|+|++++-++.
T Consensus 578 ~l~~a~~~~~~~i~~l 593 (782)
T PRK00409 578 AIKEAKKEADEIIKEL 593 (782)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445555544444
No 375
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=40.77 E-value=61 Score=24.14 Aligned_cols=30 Identities=27% Similarity=0.490 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHH
Q 021727 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEE 199 (308)
Q Consensus 157 evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE 199 (308)
=+..|+..|+++++|+ .++++.||..+++.
T Consensus 12 yI~~Lk~kLd~Kk~Ei-------------l~~ln~EY~kiLk~ 41 (56)
T PF08112_consen 12 YISILKSKLDEKKSEI-------------LSNLNMEYEKILKQ 41 (56)
T ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHH
Confidence 3566777787777755 34677788776643
No 376
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=40.70 E-value=3.5e+02 Score=26.27 Aligned_cols=55 Identities=22% Similarity=0.355 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
.+.|++.++.++++++++++....-+.+++.+.-.+..+=-|+.+...-++.++.
T Consensus 205 ~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~ 259 (269)
T PF05278_consen 205 KKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVE 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555554445555555555554444444444444444444
No 377
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=40.67 E-value=1.6e+02 Score=27.34 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 161 LESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 161 Lk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
++++-+..+.+..++.+.+....+|.....+.|.....|++.++.+..
T Consensus 100 ~~k~rK~~~~~~~k~qk~~~~~~~~~~k~kk~y~~~~kE~e~a~~~~~ 147 (239)
T cd07658 100 QHKTRKPVENEVDKAAKLLTDWRSEQIKVKKKLHGLARENEKLQDQVE 147 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444456666777778888888899999999999998887653
No 378
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=40.61 E-value=1.1e+02 Score=28.43 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHhhHHH
Q 021727 153 TLKLKLKDLESELETKSKEANA----AETNAVALRKQSEGFLF 191 (308)
Q Consensus 153 ~l~~evekLk~eLk~k~kel~k----ae~d~eaLKKQae~L~k 191 (308)
+|+.|+.+|+.+|...+.+... ...+..-+|.|.|+|.+
T Consensus 100 rLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~ 142 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLD 142 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHH
Confidence 4666666666666666655443 12233456888777744
No 379
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=40.50 E-value=2.8e+02 Score=30.57 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+.++....-.+++....++...++..+-+.||+++|..+=.+|..+.+.++..+.
T Consensus 504 laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~ 558 (786)
T PF05483_consen 504 LAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELK 558 (786)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444555555666555555555555444444433
No 380
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=40.45 E-value=79 Score=31.96 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=9.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHH
Q 021727 181 ALRKQSEGFLFEYDRLLEENQN 202 (308)
Q Consensus 181 aLKKQae~L~kEYDRL~eE~~k 202 (308)
.+|++.+.+..+.+.+.++...
T Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 80 ELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 381
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=40.31 E-value=2e+02 Score=28.31 Aligned_cols=52 Identities=21% Similarity=0.249 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhhHHHHHHH----HHhhHHHHHHHHHHHHHHHHHhHhhcccccccc
Q 021727 166 ETKSKEANAAETNAVALRK----QSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHS 217 (308)
Q Consensus 166 k~k~kel~kae~d~eaLKK----Qae~L~kEYDRL~eE~~kLq~~l~~~d~~~s~~ 217 (308)
|+..+|++..+.=+++||. .=+|.++.|-...-.|.||..-++..+--.+++
T Consensus 120 KEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqsMElAq~g~ 175 (305)
T PF15290_consen 120 KEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQSMELAQSGS 175 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHHHHhcc
Confidence 3333444444444444443 246788888888888888887777665555544
No 382
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=40.18 E-value=48 Score=25.12 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+++.||.|+..|...-.+|-.|++-|+....
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQNAS 45 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4566666666666666677777776665443
No 383
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=39.90 E-value=9.6 Score=40.86 Aligned_cols=57 Identities=30% Similarity=0.423 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
+++.++.++.+|+.++.....+..+.+-+...|+.+.+.+..|.++|..|.+.|+..
T Consensus 364 qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~ 420 (713)
T PF05622_consen 364 QLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRET 420 (713)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555444444555667777788888888888887777766654
No 384
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=39.88 E-value=1.3e+02 Score=29.42 Aligned_cols=21 Identities=19% Similarity=0.093 Sum_probs=8.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHH
Q 021727 179 AVALRKQSEGFLFEYDRLLEE 199 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~eE 199 (308)
++.++.+.+.+.++.+.+.+|
T Consensus 36 ~~~l~~~~~~~~~~~~~~~~~ 56 (378)
T TIGR01554 36 KEELETDVEKLKEEIKLLEDA 56 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333
No 385
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=39.31 E-value=1.1e+02 Score=32.34 Aligned_cols=32 Identities=6% Similarity=0.078 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 021727 100 LFLAFMIDRLHHYIRELRIRRKTMEAIKNQSR 131 (308)
Q Consensus 100 LFL~LVI~Rl~sLI~eLa~le~~~ealkKQa~ 131 (308)
-.+.=+..++-.+..+...++++.+.+.++.+
T Consensus 93 ~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~ 124 (646)
T PRK05771 93 EELEKIEKEIKELEEEISELENEIKELEQEIE 124 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777776665543
No 386
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=39.04 E-value=1.6e+02 Score=30.29 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhcccccc
Q 021727 176 ETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLS 215 (308)
Q Consensus 176 e~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~s 215 (308)
+.+.+.+.++...|...+..|....+.+......++...+
T Consensus 199 ~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~ 238 (475)
T PF10359_consen 199 KSDIEELERHISSLKERIEFLENMLEDLEDSESSSDQSSS 238 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Confidence 3466777777777777777777777766666554444433
No 387
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=38.99 E-value=98 Score=29.66 Aligned_cols=39 Identities=13% Similarity=0.208 Sum_probs=30.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 021727 93 ATLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSR 131 (308)
Q Consensus 93 aYISGFsLFL~LVI~Rl~sLI~eLa~le~~~ealkKQa~ 131 (308)
--|..|+|||-=+=-|...-|+..--.++.++...++..
T Consensus 22 k~Ir~ktl~~ek~k~r~~~ei~a~~~ee~~leey~~em~ 60 (286)
T KOG4451|consen 22 KSIRSKTLFFEKFKERCRFEICAFTWEEENLEEYELEMG 60 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 489999999998888888888877777777777766543
No 388
>PRK14143 heat shock protein GrpE; Provisional
Probab=38.62 E-value=78 Score=29.98 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=18.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
++.++++.+.+...|-|+..|.++.++...
T Consensus 76 l~~l~~e~~elkd~~lR~~AdfeN~RKR~~ 105 (238)
T PRK14143 76 LESLKQELEELNSQYMRIAADFDNFRKRTS 105 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666677777666665544
No 389
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=38.41 E-value=2.5e+02 Score=32.15 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=12.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH
Q 021727 148 EDQMTTLKLKLKDLESELETKSKEA 172 (308)
Q Consensus 148 ~~e~~~l~~evekLk~eLk~k~kel 172 (308)
.++++.++.++.+|+..|+.+..+.
T Consensus 264 ~d~~~~~~~~i~ele~~l~~l~~ek 288 (1200)
T KOG0964|consen 264 EDESEDLKCEIKELENKLTNLREEK 288 (1200)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554433
No 390
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=38.36 E-value=1.6e+02 Score=26.29 Aligned_cols=48 Identities=17% Similarity=0.320 Sum_probs=34.7
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccccc---cccCccceee
Q 021727 177 TNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRL---SHSDFRTVYW 224 (308)
Q Consensus 177 ~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~---s~~~~k~~~~ 224 (308)
.+++.+|.+....-.+-|.|.......+..+...++.| |..|=|..|=
T Consensus 34 ~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe 84 (159)
T PF05384_consen 34 KELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYE 84 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHH
Confidence 35566777777788888888888888888888777777 4455555443
No 391
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=38.33 E-value=1.3e+02 Score=27.25 Aligned_cols=39 Identities=21% Similarity=0.446 Sum_probs=28.3
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhh
Q 021727 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (308)
Q Consensus 171 el~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~ 209 (308)
.++.++.=...||+..+.|..|+..+.++...+++++..
T Consensus 19 ~l~~a~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~ 57 (204)
T PRK00373 19 RLKLAERGHKLLKDKRDELIMEFFDILDEAKKLREEVEE 57 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444567788888888888888888888877777663
No 392
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=38.23 E-value=1.2e+02 Score=25.22 Aligned_cols=8 Identities=25% Similarity=0.401 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 021727 178 NAVALRKQ 185 (308)
Q Consensus 178 d~eaLKKQ 185 (308)
++..||++
T Consensus 109 ~~k~lk~E 116 (118)
T PF13815_consen 109 EIKKLKKE 116 (118)
T ss_pred HHHHHHHh
Confidence 34444443
No 393
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=38.21 E-value=3.2e+02 Score=28.37 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=6.5
Q ss_pred cceecccCCCCCC
Q 021727 280 TSIIAGATRPFPS 292 (308)
Q Consensus 280 ~~~~~~~~~~~~~ 292 (308)
.+..+|..-|+.+
T Consensus 212 ~~tLaGs~g~it~ 224 (459)
T KOG0288|consen 212 ISTLAGSLGNITS 224 (459)
T ss_pred hhhhhccCCCcce
Confidence 3445566555443
No 394
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=38.21 E-value=1.9e+02 Score=22.51 Aligned_cols=55 Identities=18% Similarity=0.132 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 154 LKLKLKDLESELETKSKEANA-AETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~k-ae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
|+.|+=.||-.+--+++.+.+ ...+.+.+-+|--.|.-+-..|..|.+.++..+.
T Consensus 12 L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~ 67 (75)
T PF07989_consen 12 LKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLK 67 (75)
T ss_pred HHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443444444444443332 1233333333333344444444444444444433
No 395
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=38.08 E-value=2.4e+02 Score=29.96 Aligned_cols=17 Identities=24% Similarity=0.089 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021727 154 LKLKLKDLESELETKSK 170 (308)
Q Consensus 154 l~~evekLk~eLk~k~k 170 (308)
.-+|+.+|..+|-.+++
T Consensus 231 q~Ee~skLlsql~d~qk 247 (596)
T KOG4360|consen 231 QQEENSKLLSQLVDLQK 247 (596)
T ss_pred HHHHHHHHHHHHHhhHH
Confidence 33344444444444443
No 396
>PRK00295 hypothetical protein; Provisional
Probab=37.99 E-value=1.8e+02 Score=22.13 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=0.0
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHH
Q 021727 147 LEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLE 198 (308)
Q Consensus 147 ~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~e 198 (308)
..+-+..|..++.-.+.-++.+.+.+....++++.|+.|...+ ++|+.+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L---~~rl~~ 51 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL---IKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
No 397
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=37.89 E-value=1e+02 Score=32.67 Aligned_cols=45 Identities=24% Similarity=0.236 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHH-HHHHHHHH
Q 021727 155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGFLF-EYDRLLEE 199 (308)
Q Consensus 155 ~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~k-EYDRL~eE 199 (308)
.+.+++++.++++.+++++..+++++.+.++...+.. .|+.+..+
T Consensus 214 ~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 259 (646)
T PRK05771 214 SELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIE 259 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666555555555555555554444444 34444433
No 398
>PRK11677 hypothetical protein; Provisional
Probab=37.82 E-value=1.8e+02 Score=25.19 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 021727 156 LKLKDLESELETKSKE 171 (308)
Q Consensus 156 ~evekLk~eLk~k~ke 171 (308)
+++++.+.|+++-+.+
T Consensus 36 ~eLe~~k~ele~Ykqe 51 (134)
T PRK11677 36 YELEKNKAELEEYRQE 51 (134)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 399
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=37.68 E-value=2.1e+02 Score=26.78 Aligned_cols=44 Identities=14% Similarity=0.164 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHH
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEE 199 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE 199 (308)
.++++++..++....+..+++++-..--.+....+..|.+-+.+
T Consensus 168 ~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~ 211 (258)
T cd07655 168 DQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQ 211 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 56788888888888777777777776666666676667655544
No 400
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=37.62 E-value=37 Score=32.74 Aligned_cols=26 Identities=35% Similarity=0.356 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 021727 83 QVLLANHLLEATLMGASLFLAFMIDRLHH 111 (308)
Q Consensus 83 qv~arkfy~qaYISGFsLFL~LVI~Rl~s 111 (308)
.+++|.||+=-|| +|||+|+|+=+.-
T Consensus 164 nylARNFYNlr~l---ALflAFaINFILL 189 (274)
T PF06459_consen 164 NYLARNFYNLRFL---ALFLAFAINFILL 189 (274)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4789999987777 6999999986543
No 401
>PRK14141 heat shock protein GrpE; Provisional
Probab=37.61 E-value=67 Score=29.86 Aligned_cols=35 Identities=17% Similarity=0.110 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEG 188 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~ 188 (308)
+.++++.|+.++++.++.+.++.+|.+.+||..+.
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~k 70 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMENLRKRTQR 70 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777777888888888876553
No 402
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D. Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.
Probab=37.60 E-value=1.3e+02 Score=27.35 Aligned_cols=38 Identities=16% Similarity=0.478 Sum_probs=29.5
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 171 el~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
.++.++.=...||+..+.|..|+-.+.++...++..++
T Consensus 17 rl~~a~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~ 54 (209)
T TIGR00309 17 KLKMAKRGYSLLKLKRDALIMEFRQILERAKDIKNKME 54 (209)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556788888888999998888888888887766
No 403
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=37.56 E-value=2e+02 Score=30.09 Aligned_cols=7 Identities=57% Similarity=0.629 Sum_probs=2.8
Q ss_pred HHHHHHh
Q 021727 181 ALRKQSE 187 (308)
Q Consensus 181 aLKKQae 187 (308)
.||+|+|
T Consensus 485 ~Lq~~iE 491 (507)
T PF05600_consen 485 ELQKQIE 491 (507)
T ss_pred HHHHHHH
Confidence 3344433
No 404
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=37.41 E-value=1.5e+02 Score=31.34 Aligned_cols=54 Identities=20% Similarity=0.235 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727 151 MTTLKLKLKDLESELETKSKEANAAE------TNAVALRKQSEGFLFEYDRLLEENQNLR 204 (308)
Q Consensus 151 ~~~l~~evekLk~eLk~k~kel~kae------~d~eaLKKQae~L~kEYDRL~eE~~kLq 204 (308)
++.+.+++++|+.++++.+.++...+ ..+..+-++.+.+..+.+++.++-+++.
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 629 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEELE 629 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666665555553321 0234444444455555555555554444
No 405
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=37.17 E-value=2.3e+02 Score=30.84 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=12.5
Q ss_pred HHHHHHhhHHHHHHHHH---HHHHHHHHhHh
Q 021727 181 ALRKQSEGFLFEYDRLL---EENQNLRNQLQ 208 (308)
Q Consensus 181 aLKKQae~L~kEYDRL~---eE~~kLq~~l~ 208 (308)
.+.++.+.....|-.-. ++..+|.+++.
T Consensus 280 ~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~ 310 (670)
T KOG0239|consen 280 TLQSDLESLEENLVEKKKEKEERRKLHNEIL 310 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333 34445666655
No 406
>PRK14148 heat shock protein GrpE; Provisional
Probab=37.07 E-value=90 Score=28.71 Aligned_cols=31 Identities=23% Similarity=0.231 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
.++.++++.+.+...|-|+..|.++.++...
T Consensus 48 ~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~ 78 (195)
T PRK14148 48 TIKELEDSCDQFKDEALRAKAEMENIRKRAE 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777788888777766554
No 407
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=37.06 E-value=4.6e+02 Score=30.90 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=8.2
Q ss_pred hHHHHHHHHHhhHHHHHHHH
Q 021727 177 TNAVALRKQSEGFLFEYDRL 196 (308)
Q Consensus 177 ~d~eaLKKQae~L~kEYDRL 196 (308)
+.+..|..+-.++.++|+++
T Consensus 268 ~~~~~l~~e~~~l~~~~~~l 287 (1294)
T KOG0962|consen 268 KQVKLLDSEHKNLKKQISRL 287 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 408
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=36.79 E-value=2.4e+02 Score=26.33 Aligned_cols=41 Identities=17% Similarity=0.269 Sum_probs=27.1
Q ss_pred HHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccc
Q 021727 172 ANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDW 212 (308)
Q Consensus 172 l~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~ 212 (308)
..+.+.+++..-++.+...+.|+++..|.+..+...+..+.
T Consensus 114 ~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~ 154 (237)
T cd07657 114 RQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVV 154 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455556666666677788888888887777664443
No 409
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=36.68 E-value=3.6e+02 Score=30.09 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=11.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 021727 149 DQMTTLKLKLKDLESELETKSKEA 172 (308)
Q Consensus 149 ~e~~~l~~evekLk~eLk~k~kel 172 (308)
..++..++|.+++-..+++++.++
T Consensus 462 k~~e~q~~Enk~~~~~~~ekd~~l 485 (861)
T PF15254_consen 462 KVIENQKEENKRLRKMFQEKDQEL 485 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444
No 410
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=36.61 E-value=4.5e+02 Score=26.29 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHhHhhcc
Q 021727 160 DLESELETKSKEANAAETNAVALRKQSE-------GFLFEYDRLLEENQNLRNQLQSLD 211 (308)
Q Consensus 160 kLk~eLk~k~kel~kae~d~eaLKKQae-------~L~kEYDRL~eE~~kLq~~l~~~d 211 (308)
-|..+|+..-.+.+.+...+..++...+ ..+.+.|+.++|.+.++.+.+..+
T Consensus 270 ~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G 328 (384)
T KOG0972|consen 270 SLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQG 328 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566666666666666655655554333 235778888888887776665433
No 411
>COG1422 Predicted membrane protein [Function unknown]
Probab=36.50 E-value=1.6e+02 Score=27.44 Aligned_cols=32 Identities=16% Similarity=0.301 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 021727 102 LAFMIDRLHHYIRELRIRRKTMEAIKNQSRGF 133 (308)
Q Consensus 102 L~LVI~Rl~sLI~eLa~le~~~ealkKQa~~a 133 (308)
.+.++--..+++..+..-++.++.++|+++..
T Consensus 53 ~avi~gl~~~i~~~~liD~ekm~~~qk~m~ef 84 (201)
T COG1422 53 AAVITGLYITILQKLLIDQEKMKELQKMMKEF 84 (201)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 33444444566666666677777777765543
No 412
>PF07254 DUF1434: Protein of unknown function (DUF1434); InterPro: IPR009883 This family consists of several hypothetical bacterial proteins of around 135 residues in length. Members of this family all appear to be Enterobacterial proteins. The function of this family is unknown.
Probab=36.50 E-value=1.1e+02 Score=26.51 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021727 5 LFTVMFSEMALIMVLLFKTPLRKLLIMSLDRVKRGRGPVVVKTVAGTVLVMLISSVYNIMMIQKR 69 (308)
Q Consensus 5 VF~lL~~Emav~lLLvLPlP~R~~~i~~l~~~~~~r~~~~~~iv~~~l~vLFlDSirrm~K~~~~ 69 (308)
.|.+++.=.+++++|++|+|.-... +-+.++.++.+|.++.-+++...
T Consensus 16 ~~Sl~~~g~v~~~~Ll~PWP~~~~~-----------------~wl~Ll~lvvfe~irsqrri~~~ 63 (132)
T PF07254_consen 16 LLSLLVHGAVVLLILLAPWPESYTP-----------------LWLLLLSLVVFECIRSQRRIRSR 63 (132)
T ss_pred HHHHHHHHHHHHHHHHhccCcchHH-----------------HHHHHHHHHHHHHHHHHHhHHhC
Confidence 3445555566777899999833222 11223445556666666566543
No 413
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=36.36 E-value=3.9e+02 Score=25.51 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhcc--ccccccCccc
Q 021727 161 LESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLD--WRLSHSDFRT 221 (308)
Q Consensus 161 Lk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d--~~~s~~~~k~ 221 (308)
|+.+.+..-.+..+++.+++..-++.+.-.+.||+.+.|-+..+.+.+..| ...|.++..|
T Consensus 104 l~~~rk~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k~~ka~~d~~~tk~~~eK 166 (252)
T cd07675 104 LKGERKMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNATKSDVEK 166 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCHHHHHH
Confidence 333333333445566667777778888888889999988888776655433 3445544433
No 414
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=36.34 E-value=2.7e+02 Score=26.57 Aligned_cols=46 Identities=11% Similarity=0.173 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHH-HHHHHHHH
Q 021727 155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFE-YDRLLEEN 200 (308)
Q Consensus 155 ~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kE-YDRL~eE~ 200 (308)
+.++++++..+..+..+...++++-..--.+..+.+.. |...+++.
T Consensus 161 k~~~eK~k~~~~~~~q~~e~aKn~Y~~~L~~~N~~q~k~Y~e~mP~v 207 (252)
T cd07675 161 KSDVEKAKQQLNLRTHMADESKNEYAAQLQNFNGEQHKHFYIVIPQI 207 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 34567788888887777777777666555556665555 77666653
No 415
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=36.32 E-value=4.3e+02 Score=26.04 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=8.5
Q ss_pred HHHHhhhHHHHHHHHHhhHH
Q 021727 171 EANAAETNAVALRKQSEGFL 190 (308)
Q Consensus 171 el~kae~d~eaLKKQae~L~ 190 (308)
++++-+.+++-.+|..+.|+
T Consensus 141 Kierrk~ElEr~rkRle~Lq 160 (338)
T KOG3647|consen 141 KIERRKAELERTRKRLEALQ 160 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444443
No 416
>PRK14144 heat shock protein GrpE; Provisional
Probab=36.06 E-value=95 Score=28.71 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 021727 153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSE 187 (308)
Q Consensus 153 ~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae 187 (308)
.+.+++++|+.+++...+.+.++.+|.+..|+..+
T Consensus 49 ~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~ 83 (199)
T PRK14144 49 ALEEQLTLAEQKAHENWEKSVRALAELENVRRRME 83 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777766667677777777776544
No 417
>PRK10869 recombination and repair protein; Provisional
Probab=36.04 E-value=5.4e+02 Score=27.04 Aligned_cols=36 Identities=11% Similarity=0.035 Sum_probs=27.6
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 171 el~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
++...+.+++.|++|.+.+.++|..+.++..+.+.+
T Consensus 335 ~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 335 QLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567788999999999999999888877654433
No 418
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=35.84 E-value=3.5e+02 Score=24.77 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHH
Q 021727 159 KDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLE 198 (308)
Q Consensus 159 ekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~e 198 (308)
+..+.++.++..-|..++..++.|.+|...-..+|++..+
T Consensus 133 ~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 133 EGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777766777777777888877777777766543
No 419
>PRK04406 hypothetical protein; Provisional
Probab=35.81 E-value=2.1e+02 Score=22.28 Aligned_cols=30 Identities=3% Similarity=0.052 Sum_probs=13.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
++.|-+..-..+++-|+|..+...|.+++.
T Consensus 27 Ie~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 27 IEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444555444444444443
No 420
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.81 E-value=2.3e+02 Score=22.62 Aligned_cols=51 Identities=29% Similarity=0.367 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
.++..|+.+|+..-..+...+. +.+..|.+.+.+.=..|.++|..|+.+++
T Consensus 49 ~eL~~LE~~Le~aL~~VR~rK~--~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 49 KELQQLEQQLESALKRVRSRKD--QLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHhhhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566677777665554443322 46777777777777778888888887654
No 421
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=35.67 E-value=1.9e+02 Score=23.42 Aligned_cols=17 Identities=12% Similarity=0.296 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021727 154 LKLKLKDLESELETKSK 170 (308)
Q Consensus 154 l~~evekLk~eLk~k~k 170 (308)
+..+++.|+.+..+...
T Consensus 29 Lss~V~~L~~kvdql~~ 45 (85)
T PRK09973 29 LASNVQTLNAKIARLEQ 45 (85)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444443333
No 422
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=35.56 E-value=4.5e+02 Score=25.99 Aligned_cols=20 Identities=0% Similarity=0.198 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 021727 109 LHHYIRELRIRRKTMEAIKN 128 (308)
Q Consensus 109 l~sLI~eLa~le~~~ealkK 128 (308)
+..+..++..++.+...+..
T Consensus 256 i~~l~~~l~~le~~l~~l~~ 275 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQ 275 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566677777776666543
No 423
>PRK14146 heat shock protein GrpE; Provisional
Probab=35.53 E-value=87 Score=29.17 Aligned_cols=30 Identities=10% Similarity=0.205 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQ 185 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQ 185 (308)
.++++|+.+++..++.+.++.+|.+..||.
T Consensus 61 ~~l~~l~~e~~el~d~~lR~~AdfeN~rkR 90 (215)
T PRK14146 61 KELDNAKKEIESLKDSWARERAEFQNFKRR 90 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444555544443
No 424
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=35.36 E-value=5.5e+02 Score=26.92 Aligned_cols=12 Identities=33% Similarity=0.584 Sum_probs=5.9
Q ss_pred HHHhHhhccccc
Q 021727 203 LRNQLQSLDWRL 214 (308)
Q Consensus 203 Lq~~l~~~d~~~ 214 (308)
++++++.++++.
T Consensus 145 l~e~l~~f~~~v 156 (475)
T PRK10361 145 LREQLDGFRRQV 156 (475)
T ss_pred HHHHHHHHHHHH
Confidence 345555555444
No 425
>PRK14147 heat shock protein GrpE; Provisional
Probab=35.23 E-value=38 Score=30.37 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=13.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 021727 181 ALRKQSEGFLFEYDRLLEENQNLRNQL 207 (308)
Q Consensus 181 aLKKQae~L~kEYDRL~eE~~kLq~~l 207 (308)
.+++|.+.+...|-|+..|.++.++..
T Consensus 29 ~l~~e~~elkd~~lR~~Ad~eN~rkR~ 55 (172)
T PRK14147 29 SLRSEIALVKADALRERADLENQRKRI 55 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555544443
No 426
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=35.22 E-value=72 Score=23.98 Aligned_cols=27 Identities=33% Similarity=0.430 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 021727 155 KLKLKDLESELETKSKEANAAETNAVA 181 (308)
Q Consensus 155 ~~evekLk~eLk~k~kel~kae~d~ea 181 (308)
.+.++.|+++|++.+.++.++|+....
T Consensus 31 EqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 31 EQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888777777776666655543
No 427
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=35.22 E-value=3.5e+02 Score=26.30 Aligned_cols=54 Identities=19% Similarity=0.197 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 155 ~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
..+++..+.|++....+++++++++..++.|.......--+|-.|-.++.+.+.
T Consensus 199 ~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~ 252 (269)
T PF05278_consen 199 DRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIK 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777888888888888888888888876665555555555455554443
No 428
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=35.17 E-value=2e+02 Score=28.75 Aligned_cols=51 Identities=18% Similarity=0.317 Sum_probs=35.4
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHH
Q 021727 144 IKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLE 198 (308)
Q Consensus 144 ~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~e 198 (308)
.+...++++.+..++++|+..+++.. +.++.+..+++|.+.+.++.+.+.+
T Consensus 244 ~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~ 294 (406)
T PF02388_consen 244 LESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEE 294 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677778888999988887655 4445577788888877777655543
No 429
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=35.13 E-value=4e+02 Score=30.70 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccc
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDW 212 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~ 212 (308)
+++.++|-.++-..|-.||....+++.+|....|+
T Consensus 489 ~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~ 523 (1195)
T KOG4643|consen 489 QIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDI 523 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443333
No 430
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=35.09 E-value=2.5e+02 Score=31.01 Aligned_cols=48 Identities=27% Similarity=0.274 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHh--------hhHHHHHHHHHhhHHHH---HHHHHHHHHHHHHhHh
Q 021727 161 LESELETKSKEANAA--------ETNAVALRKQSEGFLFE---YDRLLEENQNLRNQLQ 208 (308)
Q Consensus 161 Lk~eLk~k~kel~ka--------e~d~eaLKKQae~L~kE---YDRL~eE~~kLq~~l~ 208 (308)
||..++.++.|+.++ +.-+++|..|+++--.+ --.|.+.|++|+..+.
T Consensus 671 LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~a~~~~~lkek~e~l~~e~~ 729 (762)
T PLN03229 671 LKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSSELKEKFEELEAELA 729 (762)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHH
Confidence 455555555555444 35688999998875443 2368888888887774
No 431
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=35.07 E-value=5.9e+02 Score=27.23 Aligned_cols=20 Identities=10% Similarity=0.110 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021727 104 FMIDRLHHYIRELRIRRKTM 123 (308)
Q Consensus 104 LVI~Rl~sLI~eLa~le~~~ 123 (308)
.|..++-..-.+.+..++.+
T Consensus 202 ~~~KelrdtN~q~~s~~eel 221 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEEL 221 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555444444444444433
No 432
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=34.97 E-value=2.5e+02 Score=25.83 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=23.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HhhHHHHHHHHHHHHHH
Q 021727 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQ--SEGFLFEYDRLLEENQN 202 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQ--ae~L~kEYDRL~eE~~k 202 (308)
+...++.++..|...+.++.+..+..++++..|.+- .+.++.+-..|-+|...
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~ 134 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAG 134 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 333444455555555555555444444444444332 23344444444444433
No 433
>PRK14154 heat shock protein GrpE; Provisional
Probab=34.96 E-value=79 Score=29.41 Aligned_cols=28 Identities=21% Similarity=0.448 Sum_probs=13.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 181 ALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 181 aLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
.+++|.+.+...|-|+..|.++.++..+
T Consensus 63 ~le~e~~elkd~~lRl~ADfeNyRKR~~ 90 (208)
T PRK14154 63 RMERKVDEYKTQYLRAQAEMDNLRKRIE 90 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555544433
No 434
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=34.86 E-value=2.7e+02 Score=23.26 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=21.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 167 TKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 167 ~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
...++|+..+..+-.+....+.|.-.=++|....+.||+.++
T Consensus 30 ~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 30 ELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445554444444445555555555555555555666555
No 435
>PRK14158 heat shock protein GrpE; Provisional
Probab=34.57 E-value=1e+02 Score=28.27 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=14.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 181 ALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 181 aLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
.++++.+.+...|-|+..|.++.++..+
T Consensus 51 ~le~e~~el~d~~lR~~AefeN~RkR~~ 78 (194)
T PRK14158 51 AKEAEAAANWDKYLRERADLENYRKRVQ 78 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555554433
No 436
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=34.54 E-value=2.8e+02 Score=28.09 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=13.6
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHH
Q 021727 147 LEDQMTTLKLKLKDLESELETKSKEA 172 (308)
Q Consensus 147 ~~~e~~~l~~evekLk~eLk~k~kel 172 (308)
.++||..+.-.++.++.|..++++|-
T Consensus 139 ~~EEn~~lqlqL~~l~~e~~Ekeees 164 (401)
T PF06785_consen 139 LREENQCLQLQLDALQQECGEKEEES 164 (401)
T ss_pred HHHHHHHHHHhHHHHHHHHhHhHHHH
Confidence 34455555555555555555555443
No 437
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=34.54 E-value=4.8e+02 Score=26.98 Aligned_cols=42 Identities=12% Similarity=0.085 Sum_probs=22.0
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHH-------HHHHhhhHHHHHHHHHhh
Q 021727 147 LEDQMTTLKLKLKDLESELETKSK-------EANAAETNAVALRKQSEG 188 (308)
Q Consensus 147 ~~~e~~~l~~evekLk~eLk~k~k-------el~kae~d~eaLKKQae~ 188 (308)
...-+..|..++-+++.+|..... .+...+..+.+|++|++.
T Consensus 284 ~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~ 332 (434)
T PRK15178 284 IYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGE 332 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHH
Confidence 334445555566666666654432 223335556666666653
No 438
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=34.25 E-value=2.1e+02 Score=31.64 Aligned_cols=60 Identities=17% Similarity=0.239 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhh
Q 021727 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~ 209 (308)
.+.-++.|...|.+.+++-...+...+.+.-+++..+++++.+|.+|..|..+++.....
T Consensus 705 q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q 764 (961)
T KOG4673|consen 705 QLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQ 764 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 439
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=34.12 E-value=3.4e+02 Score=24.15 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=7.2
Q ss_pred HHHHHHHHHhhHHHHH
Q 021727 178 NAVALRKQSEGFLFEY 193 (308)
Q Consensus 178 d~eaLKKQae~L~kEY 193 (308)
+++.+.+=++++..+|
T Consensus 111 ~~~~~~~~~~~~~~~~ 126 (155)
T PRK06569 111 NIEDINLAAKQFRTNK 126 (155)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 3444444444444444
No 440
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=34.07 E-value=2e+02 Score=21.57 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHhhHHHHHHHHHHHH
Q 021727 154 LKLKLKDLESELETKSKEANAAE-TNAVALRKQSEGFLFEYDRLLEEN 200 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae-~d~eaLKKQae~L~kEYDRL~eE~ 200 (308)
....+++.+..|+..+-|+...- ++...++.+..+...+++.|..+.
T Consensus 30 ~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 30 IERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666666666665443 455566666666666666665554
No 441
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=34.06 E-value=1.9e+02 Score=31.93 Aligned_cols=82 Identities=23% Similarity=0.302 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHH----------HHHHHHHHHHHHHHHhhhHH----HH
Q 021727 116 LRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLK----------DLESELETKSKEANAAETNA----VA 181 (308)
Q Consensus 116 La~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~eve----------kLk~eLk~k~kel~kae~d~----ea 181 (308)
-..++..++.++.|.-.++++..+... -.+.+.|++|++|++ -|+..|..+..|..+|+.+. -.
T Consensus 431 ~~~Le~elekLk~eilKAk~s~~~~~~--~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~ 508 (762)
T PLN03229 431 VRELEGEVEKLKEQILKAKESSSKPSE--LALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPV 508 (762)
T ss_pred CccHHHHHHHHHHHHHhcccccCCCCC--hHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHH
Confidence 345666677777765544322222211 123334445555443 36777777776777764311 02
Q ss_pred HHHHHhhHHHHHHHHHHH
Q 021727 182 LRKQSEGFLFEYDRLLEE 199 (308)
Q Consensus 182 LKKQae~L~kEYDRL~eE 199 (308)
|+..++.|..|++.=+.+
T Consensus 509 L~eK~~kLk~Efnkkl~e 526 (762)
T PLN03229 509 LMEKIEKLKDEFNKRLSR 526 (762)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 555577777777644443
No 442
>PF13514 AAA_27: AAA domain
Probab=33.75 E-value=4.7e+02 Score=29.71 Aligned_cols=28 Identities=18% Similarity=0.365 Sum_probs=12.7
Q ss_pred ccccCCCCCcceecc---cCCCCCCCcccch
Q 021727 271 KVRTDSDDNTSIIAG---ATRPFPSSAYSTE 298 (308)
Q Consensus 271 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 298 (308)
++++|.|.+..++.+ ...++|....|.-
T Consensus 999 ~l~~d~d~~~~~l~~~~~~G~~~~~~~LS~G 1029 (1111)
T PF13514_consen 999 RLRVDEDGDKPVLVVVRADGERVPVEELSRG 1029 (1111)
T ss_pred eeeeccccCcccceEEecCCeEeeHHHhCHH
Confidence 566666554322222 2234555555543
No 443
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=33.72 E-value=3.6e+02 Score=25.01 Aligned_cols=87 Identities=20% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHH
Q 021727 119 RRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLE 198 (308)
Q Consensus 119 le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~e 198 (308)
+.+....++.+....+. +........+.+..++.++..-+...++-+... ++.-.++.+....++.++..
T Consensus 7 ~d~~~~~~~~e~~~~E~-------e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~---i~e~~~~~~~~~~~i~~~~~ 76 (207)
T PF05010_consen 7 LDAAIKKVQEEVAEKEE-------EEQELKKKYEELHKENQEMRKIMEEYEKTIAQM---IEEKQKQKELSEAEIQKLLK 76 (207)
T ss_pred HHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHhhHHhHHHHHHHHHh
Q ss_pred HHHHHHHhHhhcccccc
Q 021727 199 ENQNLRNQLQSLDWRLS 215 (308)
Q Consensus 199 E~~kLq~~l~~~d~~~s 215 (308)
|.+.+...+.+.++.||
T Consensus 77 erdq~~~dL~s~E~sfs 93 (207)
T PF05010_consen 77 ERDQAYADLNSLEKSFS 93 (207)
T ss_pred hHHHHHHHHHHHHhhHH
No 444
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=33.66 E-value=3.1e+02 Score=24.90 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH
Q 021727 157 KLKDLESELETKSKEANAAETNA 179 (308)
Q Consensus 157 evekLk~eLk~k~kel~kae~d~ 179 (308)
++..++.+++..+.+...++.+.
T Consensus 144 K~~~~~~ei~~~e~~~~~a~~~~ 166 (216)
T cd07627 144 KLNSLLSELEEAERRASELKKEF 166 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333333
No 445
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.59 E-value=1.1e+02 Score=31.62 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 021727 103 AFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVAL 182 (308)
Q Consensus 103 ~LVI~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaL 182 (308)
...+..+..+-.+-.++....+.++.+....++.-.+....... ....+.++++.++.+++..+.++...+++++.+
T Consensus 25 ~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~---~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ 101 (429)
T COG0172 25 ALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED---DAEELIAEVKELKEKLKELEAALDELEAELDTL 101 (429)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch---hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
No 446
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=33.57 E-value=2.9e+02 Score=25.49 Aligned_cols=49 Identities=12% Similarity=0.235 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHhhHHHHHHHHHHHHHH
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAV-ALRKQSEGFLFEYDRLLEENQN 202 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~e-aLKKQae~L~kEYDRL~eE~~k 202 (308)
+.+++.+|++++....+.|++-+.-.. .-++--++..++|.+-..+.-+
T Consensus 121 mQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk 170 (201)
T KOG4603|consen 121 MQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRK 170 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666655555433322111 1233445556667666655544
No 447
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=33.36 E-value=1.3e+02 Score=24.06 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=9.3
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 021727 149 DQMTTLKLKLKDLESELE 166 (308)
Q Consensus 149 ~e~~~l~~evekLk~eLk 166 (308)
.++++.++++.+++..|+
T Consensus 8 ~eieK~k~Kiae~Q~rlK 25 (83)
T PF14193_consen 8 AEIEKTKEKIAELQARLK 25 (83)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555555555
No 448
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=33.35 E-value=93 Score=25.13 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHH
Q 021727 159 KDLESELETKSKEANAAETNAVALRKQSEGFL 190 (308)
Q Consensus 159 ekLk~eLk~k~kel~kae~d~eaLKKQae~L~ 190 (308)
++|+.|++..++++..++..+..|+-|...+.
T Consensus 4 e~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 4 EELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455455445555555555554
No 449
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=33.22 E-value=1.5e+02 Score=31.98 Aligned_cols=50 Identities=24% Similarity=0.203 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~ 205 (308)
..+-.|+..+..++.++...+.+++.+.+++..++.+--.|..|.++++.
T Consensus 24 ~~v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~r~ 73 (732)
T KOG0614|consen 24 NLVPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIAKLTNELDKLRS 73 (732)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhc
Confidence 34556777778888888888888999999999999998889888888877
No 450
>PRK14162 heat shock protein GrpE; Provisional
Probab=33.20 E-value=99 Score=28.41 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=15.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 180 VALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 180 eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+.+++|.+.+...|-|+..|.++.++...
T Consensus 49 ~~l~~e~~elkd~~lR~~AEfeN~rkR~~ 77 (194)
T PRK14162 49 ADLKAKNKDLEDKYLRSQAEIQNMQNRYA 77 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555556666666666554443
No 451
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=33.10 E-value=4.2e+02 Score=24.97 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=35.4
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhcccccc
Q 021727 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLS 215 (308)
Q Consensus 171 el~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~s 215 (308)
+..+++++.+..-++.+.-.+.||+.+.|.+..+.+.+..+.-++
T Consensus 115 ~~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~ka~~d~~ 159 (253)
T cd07676 115 DGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADIN 159 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 445677788888888888899999999999998887765554433
No 452
>PLN02943 aminoacyl-tRNA ligase
Probab=33.01 E-value=1.5e+02 Score=33.32 Aligned_cols=26 Identities=12% Similarity=0.307 Sum_probs=18.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 021727 148 EDQMTTLKLKLKDLESELETKSKEAN 173 (308)
Q Consensus 148 ~~e~~~l~~evekLk~eLk~k~kel~ 173 (308)
..|.++|.++++++++|++..++.|.
T Consensus 888 ~~E~~rL~K~l~klekei~~~~~kLs 913 (958)
T PLN02943 888 SAEVERLSKRLSKMQTEYDALAARLS 913 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34556677777778888777777663
No 453
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=32.92 E-value=2.5e+02 Score=22.31 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+.+...++-=.+..+|+.+.|=-+.|-..++
T Consensus 33 ~~~~~v~~hI~lLheYNeiKD~gQ~Lig~iA 63 (83)
T PF07061_consen 33 DPEKIVKRHIKLLHEYNEIKDIGQGLIGLIA 63 (83)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444445555667899999988888777666
No 454
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=32.81 E-value=3.5e+02 Score=25.15 Aligned_cols=59 Identities=10% Similarity=0.017 Sum_probs=40.5
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH-----------HHHhHhhccccccccCccceeecccccc
Q 021727 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQN-----------LRNQLQSLDWRLSHSDFRTVYWNAEKTA 230 (308)
Q Consensus 171 el~kae~d~eaLKKQae~L~kEYDRL~eE~~k-----------Lq~~l~~~d~~~s~~~~k~~~~~~~~~~ 230 (308)
.+..++.+.++.+-+++|+..++..+.+++.. .+..++....-.++++ |.+++..+...
T Consensus 184 ~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~~~~-kviv~p~~~~~ 253 (262)
T cd03407 184 KRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGRSSS-TVVFRPHGPGG 253 (262)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHhCCC-CEEEecCCCcc
Confidence 34456777888888899999999999887722 2345566666555555 87888666544
No 455
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=32.80 E-value=1.3e+02 Score=32.76 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=6.6
Q ss_pred hhHHHHHHHHHHHHH
Q 021727 187 EGFLFEYDRLLEENQ 201 (308)
Q Consensus 187 e~L~kEYDRL~eE~~ 201 (308)
+.|..|-.+|-||..
T Consensus 36 ~~Lk~~vqkLEDEKK 50 (654)
T PF09798_consen 36 NKLKSEVQKLEDEKK 50 (654)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444545543
No 456
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=32.72 E-value=3.8e+02 Score=25.53 Aligned_cols=100 Identities=10% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-----HHHhhH
Q 021727 115 ELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALR-----KQSEGF 189 (308)
Q Consensus 115 eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLK-----KQae~L 189 (308)
++...+.+.+..+.+.+.+++ .-+..+.+-+...--+.+.++.+.+++....++..++.++..++ .+.+..
T Consensus 108 ~i~~~~~~l~~ak~~l~~a~~----~~~r~~~L~~~g~vs~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~ 183 (331)
T PRK03598 108 EIAQARAAVKQAQAAYDYAQN----FYNRQQGLWKSRTISANDLENARSSRDQAQATLKSAQDKLSQYREGNRPQDIAQA 183 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHhhccccccccC
Q 021727 190 LFEYDRLLEENQNLRNQLQSLDWRLSHSD 218 (308)
Q Consensus 190 ~kEYDRL~eE~~kLq~~l~~~d~~~s~~~ 218 (308)
.....+...+.++.+.+++....+...++
T Consensus 184 ~~~l~~~~~~l~~a~~~l~~~~I~AP~dG 212 (331)
T PRK03598 184 KASLAQAQAALAQAELNLQDTELIAPSDG 212 (331)
T ss_pred HHHHHHHHHHHHHHHHHHhcCEEECCCCe
No 457
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=32.71 E-value=5.4e+02 Score=26.10 Aligned_cols=47 Identities=26% Similarity=0.211 Sum_probs=23.2
Q ss_pred hccccccccCccceeecc-ccccccc-cchhhhhhhhhhhhhccCCcch
Q 021727 209 SLDWRLSHSDFRTVYWNA-EKTASST-YCAAKVLDFELLTKLSMGSSSC 255 (308)
Q Consensus 209 ~~d~~~s~~~~k~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 255 (308)
+.--.+|--|.|.+|..+ |.-.-.- |--.-++--+...+-+|-++.|
T Consensus 188 tf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~~~~e~~p~~~~ 236 (401)
T PF06785_consen 188 TFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQLESDMKESMPSTPS 236 (401)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCc
Confidence 556667777788888744 3211111 1111222334444555655555
No 458
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=32.61 E-value=2.5e+02 Score=28.74 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhHh--hccccccccCccceeecccc
Q 021727 192 EYDRLLEENQNLRNQLQ--SLDWRLSHSDFRTVYWNAEK 228 (308)
Q Consensus 192 EYDRL~eE~~kLq~~l~--~~d~~~s~~~~k~~~~~~~~ 228 (308)
-.+++.+..+++.-|.. ..-+-.+=.-||-||+..--
T Consensus 344 ~~~~~~~~i~k~~~q~~~ke~nk~vaLgTSk~NY~DPRi 382 (391)
T smart00435 344 QIERLEERIEKLEVQATDKEENKTVALGTSKINYIDPRI 382 (391)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCeeeecccchhhccCCcc
Confidence 34455555555444433 44455566667777775543
No 459
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=32.58 E-value=3.4e+02 Score=26.32 Aligned_cols=29 Identities=21% Similarity=0.036 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727 176 ETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (308)
Q Consensus 176 e~d~eaLKKQae~L~kEYDRL~eE~~kLq 204 (308)
..+.+.|+-..+..+.-|+.++..+++.+
T Consensus 277 ~~~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 277 TADYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555566666666555544
No 460
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=32.57 E-value=2.2e+02 Score=29.66 Aligned_cols=12 Identities=42% Similarity=0.429 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 021727 192 EYDRLLEENQNL 203 (308)
Q Consensus 192 EYDRL~eE~~kL 203 (308)
||+.|.+|++.|
T Consensus 210 E~e~L~~e~~~L 221 (563)
T TIGR00634 210 EDEALEAEQQRL 221 (563)
T ss_pred cHHHHHHHHHHH
Confidence 444444444433
No 461
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=32.39 E-value=5e+02 Score=26.98 Aligned_cols=53 Identities=25% Similarity=0.234 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727 152 TTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (308)
Q Consensus 152 ~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq 204 (308)
+.+..|-++|-++++..+++-.....++..+...++.+..+-++...|+..-+
T Consensus 186 ~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~ 238 (447)
T KOG2751|consen 186 KNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQ 238 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555565566555444333334455555566666666667777765433
No 462
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=32.36 E-value=4.6e+02 Score=25.15 Aligned_cols=88 Identities=6% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHH
Q 021727 114 RELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAA----------ETNAVALR 183 (308)
Q Consensus 114 ~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~ka----------e~d~eaLK 183 (308)
.++...+++++++..+.+.+.. ..+....+.+....+++..+.+++..++++.+. +.+++..+
T Consensus 86 ~~l~~a~a~l~~a~a~l~~~~~-------~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~ 158 (346)
T PRK10476 86 LTVAQAQADLALADAQIMTTQR-------SVDAERSNAASANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQAR 158 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHH
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 184 KQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 184 KQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
.+.+....+++....++...+..+.
T Consensus 159 ~~~~~a~~~l~~a~~~~~~~~~~~~ 183 (346)
T PRK10476 159 TAQRDAEVSLNQALLQAQAAAAAVG 183 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
No 463
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=32.35 E-value=2.4e+02 Score=21.82 Aligned_cols=45 Identities=27% Similarity=0.324 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+-.|..+|+.-|+ .+..+||++.+.+..==++..++++.+..+.+
T Consensus 11 LL~EN~~LKealr----------Q~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~ 55 (68)
T PF11577_consen 11 LLQENQDLKEALR----------QNNQAMKERFEELLAWQEKQKEEREFLERKFQ 55 (68)
T ss_dssp HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555444 25689999999999888888888887665543
No 464
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=32.28 E-value=3.1e+02 Score=23.15 Aligned_cols=90 Identities=11% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHH
Q 021727 117 RIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRL 196 (308)
Q Consensus 117 a~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL 196 (308)
..++++-..+..+..+++.+.++..........+.+.|+.-+..|+.+-....+.+..-++.+.-+.++.+.-...|+.|
T Consensus 5 ~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l 84 (107)
T PF09304_consen 5 EALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLEL 84 (107)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHh
Q 021727 197 LEENQNLRNQ 206 (308)
Q Consensus 197 ~eE~~kLq~~ 206 (308)
...+.+-+..
T Consensus 85 ~~r~~k~~~d 94 (107)
T PF09304_consen 85 ESRLLKAQKD 94 (107)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
No 465
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.25 E-value=4e+02 Score=30.76 Aligned_cols=48 Identities=19% Similarity=0.168 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 158 vekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~ 205 (308)
.++.+.|+.+.++.+..+..++.-|.++.-++...-+++-.|-+.+-.
T Consensus 851 ~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~ 898 (1141)
T KOG0018|consen 851 FEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLS 898 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555433
No 466
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=32.13 E-value=3.2e+02 Score=26.37 Aligned_cols=61 Identities=25% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH---HHHHHHHHHHHHhHh
Q 021727 145 KALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEY---DRLLEENQNLRNQLQ 208 (308)
Q Consensus 145 ~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEY---DRL~eE~~kLq~~l~ 208 (308)
+.+..-.+-++++++.+++.+++..++..+ +...|++|.+++...- .+|.++-.+|++-+.
T Consensus 2 ~~l~~l~~pl~e~l~~~~~~l~~~~~~~~~---~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~ 65 (304)
T PF02646_consen 2 EQLEQLLKPLKEQLEKFEKRLEESFEQRSE---EFGSLKEQLKQLSEANGEIQQLSQEASNLTSALK 65 (304)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
No 467
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=32.10 E-value=4.7e+02 Score=26.07 Aligned_cols=80 Identities=19% Similarity=0.181 Sum_probs=0.0
Q ss_pred hHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH--------HHHHHHHHHHHHHHHHhHhhccc
Q 021727 141 SEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF--------LFEYDRLLEENQNLRNQLQSLDW 212 (308)
Q Consensus 141 ~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L--------~kEYDRL~eE~~kLq~~l~~~d~ 212 (308)
.++.++..+.....+++++++.+......+.+.+.+..+..+++-.+.+ .+.-+.|.++-.+.+..+..+|.
T Consensus 10 ~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~DmEa 89 (330)
T PF07851_consen 10 QKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLFDMEA 89 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHHHHHh
Q ss_pred cccccCcc
Q 021727 213 RLSHSDFR 220 (308)
Q Consensus 213 ~~s~~~~k 220 (308)
-+.++...
T Consensus 90 ~LPkkNGl 97 (330)
T PF07851_consen 90 FLPKKNGL 97 (330)
T ss_pred hCCCCCCc
No 468
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=32.08 E-value=3.3e+02 Score=23.36 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 021727 95 LMGASLFLAFMIDRLH-HYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEAN 173 (308)
Q Consensus 95 ISGFsLFL~LVI~Rl~-sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~ 173 (308)
+..|.+||+++..-.. .-|.....-+. +...+.++.-....++.+..+++.+.++.
T Consensus 8 ~i~f~i~l~~l~~~~~~~pi~~~l~~R~-----------------------~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~ 64 (159)
T PRK09173 8 FVGLVLFLALVVYLKVPGMIARSLDARA-----------------------DRIKNELAEARRLREEAQQLLAEYQRKRK 64 (159)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhHHHHHHHHHh
Q 021727 174 AAETNAVALRKQSE 187 (308)
Q Consensus 174 kae~d~eaLKKQae 187 (308)
.++.+...+..++.
T Consensus 65 ~A~~ea~~ii~~A~ 78 (159)
T PRK09173 65 EAEKEAADIVAAAE 78 (159)
T ss_pred HHHHHHHHHHHHHH
No 469
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=32.05 E-value=59 Score=27.92 Aligned_cols=42 Identities=26% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhc
Q 021727 169 SKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSL 210 (308)
Q Consensus 169 ~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~ 210 (308)
..++...+.+++.+.+|.+.+...|-|+..+.++++..+...
T Consensus 10 ~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e 51 (165)
T PF01025_consen 10 DEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKE 51 (165)
T ss_dssp HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 470
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=31.99 E-value=4.6e+02 Score=24.99 Aligned_cols=99 Identities=19% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHh
Q 021727 109 LHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAV-ALRKQSE 187 (308)
Q Consensus 109 l~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~e-aLKKQae 187 (308)
+..++......+...-.+.++....++..............+...+.++.++.+..++............+. -|+...+
T Consensus 178 L~~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~ 257 (297)
T PF02841_consen 178 LQEFLQSKESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEERE 257 (297)
T ss_dssp HHHHHHHCHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHhH
Q 021727 188 GFLFEYDRLLEENQNLRNQL 207 (308)
Q Consensus 188 ~L~kEYDRL~eE~~kLq~~l 207 (308)
.+..||+++++.....+.++
T Consensus 258 ~~~~e~e~~l~~k~~eq~~~ 277 (297)
T PF02841_consen 258 QLLQEQERLLEQKLQEQEEL 277 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 471
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=31.98 E-value=54 Score=28.15 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH
Q 021727 148 EDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEY 193 (308)
Q Consensus 148 ~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEY 193 (308)
.++++.+..+++.|+.+++...+++.+..++++.+++..+.-..+.
T Consensus 10 ~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~ 55 (165)
T PF01025_consen 10 DEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEA 55 (165)
T ss_dssp HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=31.94 E-value=1.5e+02 Score=30.61 Aligned_cols=65 Identities=22% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhc
Q 021727 144 IKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSL 210 (308)
Q Consensus 144 ~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~ 210 (308)
.+.+.++.+.+-.++++|+.-++...++. +..-+--.++|.++..+|-+....|.++++.-+...
T Consensus 212 k~kL~~~Sd~lltkVDDLQD~vE~LRkDV--~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~e 276 (426)
T smart00806 212 KKKLSEDSDSLLTKVDDLQDIIEALRKDV--AQRGVRPSKKQLETVQKELETARKELKKMEEYIDIE 276 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 473
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=31.84 E-value=1.9e+02 Score=26.45 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 162 ESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 162 k~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+.+|-..++.++-++.=...|+..-+.|..|+..+.++...++..++
T Consensus 9 K~eL~~lk~~L~~a~rg~~lLk~KR~~Li~e~~~~~~~~~~lr~~~~ 55 (201)
T PRK02195 9 KNSLKKQKKQLKMLERYLPTLKLKKAQLQAEVRRAKAEAAELEQEYQ 55 (201)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 474
>PRK00736 hypothetical protein; Provisional
Probab=31.79 E-value=2.3e+02 Score=21.54 Aligned_cols=49 Identities=20% Similarity=0.388 Sum_probs=0.0
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHH
Q 021727 147 LEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLE 198 (308)
Q Consensus 147 ~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~e 198 (308)
..+-+..|..++.-++.-++.+.+.+....++++.|++|...+ ++|+.+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L---~~rl~~ 51 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL---TERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
No 475
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=31.73 E-value=1.5e+02 Score=27.27 Aligned_cols=58 Identities=21% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHH-------HHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhcccc
Q 021727 156 LKLKDLE-------SELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWR 213 (308)
Q Consensus 156 ~evekLk-------~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~ 213 (308)
+++-+.+ ...++-...++++-...+..-+|.++...+|+.+.|+++++.++.+++..+
T Consensus 125 ~~ml~~~~~~~~k~D~~eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~d~~ne~~~~v~~e~sk 189 (192)
T COG5374 125 EEMLEENAKKGGKIDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQKESSK 189 (192)
T ss_pred HHHHHHhhhcccchhhhhcchHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
No 476
>PRK14157 heat shock protein GrpE; Provisional
Probab=31.66 E-value=99 Score=29.20 Aligned_cols=34 Identities=9% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSE 187 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae 187 (308)
+..++++|+.++++.++.+.+..+|.+..||..+
T Consensus 82 ~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~ 115 (227)
T PRK14157 82 TLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQ 115 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.56 E-value=82 Score=24.76 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh-hccccccccC
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQ-SLDWRLSHSD 218 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~-~~d~~~s~~~ 218 (308)
+.-.+-+|.++-...|+||.++|++|-..+. .++-+-+.+|
T Consensus 4 Efr~~is~Lk~~dahF~rLfd~hn~LDd~I~~~E~n~~~~s~ 45 (72)
T COG2841 4 EFRDLISKLKANDAHFARLFDKHNELDDRIKRAEGNRQPGSD 45 (72)
T ss_pred hHHHHHHHHhccchHHHHHHHHHhHHHHHHHHHhcCCCCCcH
No 478
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=31.53 E-value=3.9e+02 Score=25.63 Aligned_cols=66 Identities=15% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhc
Q 021727 145 KALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSL 210 (308)
Q Consensus 145 ~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~ 210 (308)
.....+....+.+++..+.+++..+..+...+.+++.++.|.+..+.+|+....+++..+.-.+.+
T Consensus 82 ~~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g 147 (346)
T PRK10476 82 RPYELTVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLAKG 147 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
No 479
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=31.53 E-value=2.3e+02 Score=31.48 Aligned_cols=100 Identities=19% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 021727 107 DRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQS 186 (308)
Q Consensus 107 ~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQa 186 (308)
|+.+.=|++...++..++-+.+|.....-......+....-. ..++.+++.++++.+.|+...+++-++||++
T Consensus 49 R~fv~evrRcdemeRklrfl~~ei~k~~i~~~~~~~~~~~p~------~~~i~dle~~l~klE~el~eln~n~~~L~~n- 121 (829)
T KOG2189|consen 49 RKFVNEVRRCDEMERKLRFLESEIKKAGIPLPDLDESPPAPP------PREIIDLEEQLEKLESELRELNANKEALKAN- 121 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCC------chHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhhccc--cccccCc
Q 021727 187 EGFLFEYDRLLEENQNLRNQLQSLDW--RLSHSDF 219 (308)
Q Consensus 187 e~L~kEYDRL~eE~~kLq~~l~~~d~--~~s~~~~ 219 (308)
|.+|.|...-|++..+-.+. ..|..++
T Consensus 122 ------~~eL~E~~~vl~~t~~Ff~~~~~~~~~~~ 150 (829)
T KOG2189|consen 122 ------YNELLELKYVLEKTDEFFSTSVQESFEDD 150 (829)
T ss_pred ------HHHHHHHHHHHHhhhhhcccchhhhhcch
No 480
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=31.45 E-value=3.9e+02 Score=25.42 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh------HHHHHHHHHHHHHHHHHhHhhc
Q 021727 144 IKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEG------FLFEYDRLLEENQNLRNQLQSL 210 (308)
Q Consensus 144 ~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~------L~kEYDRL~eE~~kLq~~l~~~ 210 (308)
.+...-+..-+....++.+.|.+.+.+.+.++..++.-|++++.| ......+..+.+...|.+++..
T Consensus 102 E~k~E~D~k~i~a~~Kky~~e~k~k~~sleK~qseLKKlRrKsqg~k~~~ky~~ke~q~~~~~~~~q~ele~f 174 (232)
T cd07646 102 EQKVELDSRYLTAALKKYQTEHRSKGESLEKCQAELKKLRKKSQGSKNPQKYSDKELQYIEAISNKQGELENY 174 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHH
No 481
>COG1422 Predicted membrane protein [Function unknown]
Probab=31.44 E-value=2.9e+02 Score=25.75 Aligned_cols=72 Identities=17% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 021727 99 SLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETN 178 (308)
Q Consensus 99 sLFL~LVI~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d 178 (308)
+|-.+.++--..+++..+..-++.++.++|+++..++ +-++..++++. +++++|+++=.+.... .
T Consensus 50 ilV~avi~gl~~~i~~~~liD~ekm~~~qk~m~efq~-------e~~eA~~~~d~--~~lkkLq~~qmem~~~------Q 114 (201)
T COG1422 50 ILVAAVITGLYITILQKLLIDQEKMKELQKMMKEFQK-------EFREAQESGDM--KKLKKLQEKQMEMMDD------Q 114 (201)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-------HHHHHHHhCCH--HHHHHHHHHHHHHHHH------H
Q ss_pred HHHHHHH
Q 021727 179 AVALRKQ 185 (308)
Q Consensus 179 ~eaLKKQ 185 (308)
.|=+|-|
T Consensus 115 ~elmk~q 121 (201)
T COG1422 115 RELMKMQ 121 (201)
T ss_pred HHHHHHh
No 482
>PF14282 FlxA: FlxA-like protein
Probab=31.44 E-value=2.9e+02 Score=22.60 Aligned_cols=54 Identities=11% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 155 KLKLKDLESELETKSKEANAAET----NAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 155 ~~evekLk~eLk~k~kel~kae~----d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
...++.|+.+++.+.++|..... +-+.-++|.+-|+..-.-|......++.+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=31.43 E-value=1.4e+02 Score=33.08 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727 148 EDQMTTLKLKLKDLESELETKSKEANAAE-------TNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 148 ~~e~~~l~~evekLk~eLk~k~kel~kae-------~d~eaLKKQae~L~kEYDRL~eE~~kLq~ 205 (308)
..|.+++.+++++++++++..++.|.... .-++.-+++.++++.+...+.+....+++
T Consensus 810 ~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~~l~~ 874 (874)
T PRK05729 810 EAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLARLKA 874 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 484
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=31.29 E-value=1.2e+02 Score=27.64 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 021727 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSE 187 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae 187 (308)
....+.+++++|+.++++..+.+.++.+|++.++++.+
T Consensus 37 ~~~~~~~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~ 74 (193)
T COG0576 37 ELEEEQQEIAELEAQLEELKDKYLRAQAEFENLRKRTE 74 (193)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=31.29 E-value=3.4e+02 Score=23.32 Aligned_cols=68 Identities=25% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH-------------HHHHHHHHHHHHHHHHhHh
Q 021727 142 EEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF-------------LFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 142 ~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L-------------~kEYDRL~eE~~kLq~~l~ 208 (308)
.+.+.+..+.+.|..+-+.-..+.++..+.+.+.-++..+++.+.+.. ..+|..|..+|+.+.++++
T Consensus 27 ~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L~ 106 (126)
T PF09403_consen 27 SELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKLD 106 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h
Q 021727 209 S 209 (308)
Q Consensus 209 ~ 209 (308)
.
T Consensus 107 k 107 (126)
T PF09403_consen 107 K 107 (126)
T ss_dssp H
T ss_pred H
No 486
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=30.87 E-value=4.5e+02 Score=24.59 Aligned_cols=88 Identities=15% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH
Q 021727 114 RELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEY 193 (308)
Q Consensus 114 ~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEY 193 (308)
+....+......+....+++.. .........+....+++.+-..|+..+.....++..+..|.++.+.+...-
T Consensus 109 s~~~eLeEe~~~~~~nlk~l~~-------~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl 181 (205)
T KOG1003|consen 109 SQSEELEEDLRILDSNLKSLSA-------KEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKL 181 (205)
T ss_pred HHHHHHHHHHHHhHhHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhh
Q ss_pred HHHHHHHHHHHHhHh
Q 021727 194 DRLLEENQNLRNQLQ 208 (308)
Q Consensus 194 DRL~eE~~kLq~~l~ 208 (308)
....++|..++..++
T Consensus 182 ~~~k~ky~~~~~eLD 196 (205)
T KOG1003|consen 182 EEAKEKYEEAKKELD 196 (205)
T ss_pred HHHHHHHHHHHHHHH
No 487
>PRK14011 prefoldin subunit alpha; Provisional
Probab=30.84 E-value=1.6e+02 Score=25.71 Aligned_cols=67 Identities=12% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccccccccCccceeeccccccccccchhhhhh
Q 021727 169 SKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHSDFRTVYWNAEKTASSTYCAAKVLD 241 (308)
Q Consensus 169 ~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~s~~~~k~~~~~~~~~~~~~~~~~~~~~ 241 (308)
.+++...-..++.++.|++.|+.+++.|..-..+..+....-+ +...++.+.. .=.++.|..+|+.|
T Consensus 2 ~~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~---~l~~~~eiLV---PLg~s~yV~g~i~d 68 (144)
T PRK14011 2 NEELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESME---GLKTSEEILI---PLGPGAFLKAKIVD 68 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCCCCeEEE---EcCCCcEEeEEecC
No 488
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=30.84 E-value=2.6e+02 Score=21.76 Aligned_cols=77 Identities=22% Similarity=0.375 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccc------------cccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 021727 106 IDRLHHYIRELRIRRKTMEAIKNQSRGFEDG------------KAASSEEIKALEDQMTTLKLKLKDLESELETKSKEAN 173 (308)
Q Consensus 106 I~Rl~sLI~eLa~le~~~ealkKQa~~a~~~------------~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~ 173 (308)
+..+..-+..+..-...++...++.+.+... .....+-.+.+.+..+.+..++++|+.+++...+++.
T Consensus 14 l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~ 93 (106)
T PF01920_consen 14 LQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLK 93 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhHHHHH
Q 021727 174 AAETNAVAL 182 (308)
Q Consensus 174 kae~d~eaL 182 (308)
..+.++.++
T Consensus 94 ~~~~~l~~~ 102 (106)
T PF01920_consen 94 ELKKKLYEL 102 (106)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHH
No 489
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=30.81 E-value=2.4e+02 Score=21.38 Aligned_cols=61 Identities=16% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021727 98 ASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAET 177 (308)
Q Consensus 98 FsLFL~LVI~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~ 177 (308)
..+++.+++--.+.++..-..... +..++++++.+++..+.
T Consensus 5 ~~~l~~~v~~~~~~~v~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~~------- 45 (85)
T TIGR02209 5 YVLLLLAILVSAISVVSAQHQTRQ--------------------------------LNNELQKLQLEIDKLQK------- 45 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHH-------
Q ss_pred HHHHHHHHHhhHHHHHHHHHH
Q 021727 178 NAVALRKQSEGFLFEYDRLLE 198 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~e 198 (308)
+.+.|+.+...+.. .||+-+
T Consensus 46 en~~L~~ei~~l~~-~~rIe~ 65 (85)
T TIGR02209 46 EWRDLQLEVAELSR-HERIEK 65 (85)
T ss_pred HHHHHHHHHHHHcC-HHHHHH
No 490
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=30.78 E-value=1.7e+02 Score=23.70 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 021727 151 MTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEG 188 (308)
Q Consensus 151 ~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~ 188 (308)
..++++++++|++|.+....|...++++++.-+.+-+|
T Consensus 25 ~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqkn 62 (87)
T PF10883_consen 25 VKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKN 62 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 491
>PRK14156 heat shock protein GrpE; Provisional
Probab=30.78 E-value=1.1e+02 Score=27.80 Aligned_cols=35 Identities=9% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEG 188 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~ 188 (308)
+..++++|+.+++..++.+.++.+|.+.+||..+.
T Consensus 32 ~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~r 66 (177)
T PRK14156 32 EKSELELANERADEFENKYLRAHAEMQNIQRRANE 66 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=30.62 E-value=2.6e+02 Score=26.87 Aligned_cols=103 Identities=17% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHhhcc--chhhHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 021727 35 RVKRGR--GPVVVKTVAGTVLVMLISSVYNIMMIQKRWIDDEGAVVNPTDQVLLANHLLEATLMGASLFLAFMIDRLHHY 112 (308)
Q Consensus 35 ~~~~~r--~~~~~~iv~~~l~vLFlDSirrm~K~~~~~~~~~~~~~~p~~qv~arkfy~qaYISGFsLFL~LVI~Rl~sL 112 (308)
.++.++ +...+.+++..+.++|+|+-.+..-........ .+.|..-+... ..-.+.-+.--
T Consensus 2 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~s~~~~v~~~--------------p~~~v~~~~~~ 64 (284)
T COG1792 2 IFSLNKLLKIFLVLIILLLLLLLFADSRGQVSSIIRQVVGT---VLSPVQSVVAA--------------PFEFVDGVLEF 64 (284)
T ss_pred ccccchhHHHHHHHHHHHHHHHhheeccccccccceeeecc---chhHHHHHHhh--------------HHHHHHhHHHH
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHH
Q 021727 113 IRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESEL 165 (308)
Q Consensus 113 I~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eL 165 (308)
+.....+..+.+.+++|.+ +......+.+.+++|.++|+..|
T Consensus 65 ~~~~~~~~~en~~Lk~~l~-----------~~~~~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 65 LKSLKDLALENEELKKELA-----------ELEQLLEEVESLEEENKRLKELL 106 (284)
T ss_pred HHHhHHHHHHhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHh
No 493
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.51 E-value=4.4e+02 Score=24.39 Aligned_cols=101 Identities=17% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 021727 105 MIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRK 184 (308)
Q Consensus 105 VI~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKK 184 (308)
+-.++..++..+....++...-.|..+.......+...........+++.+..-...-.+++..+.+.. ..++++-++.
T Consensus 79 l~~~L~~~~~~l~~~~~~~~k~rK~~k~~~~~~~k~~~~~~~~~~~l~KaK~~Y~~~c~e~e~~~~~~~-s~k~~eK~~~ 157 (261)
T cd07648 79 LVQKLQELIKDVQKYGEEQHKKHKKVKEEESGTAEAVQAIQTTTAALQKAKEAYHARCLELERLRRENA-SPKEIEKAEA 157 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHH
Q ss_pred HHhhHHHHHHHHHHHHHHHHHh
Q 021727 185 QSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 185 Qae~L~kEYDRL~eE~~kLq~~ 206 (308)
.++....+|....++++..+.+
T Consensus 158 K~~ka~~~Y~~~v~~~~~~~~~ 179 (261)
T cd07648 158 KLKKAQDEYKALVEKYNNIRAD 179 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 494
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=30.50 E-value=5.5e+02 Score=27.11 Aligned_cols=99 Identities=13% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHH
Q 021727 111 HYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAA----ETNAVALRKQS 186 (308)
Q Consensus 111 sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~ka----e~d~eaLKKQa 186 (308)
++..++-+..+++-.|+.....--..+.+....--++........++++.|+..=.+.++....| +.+.++..-+-
T Consensus 415 tLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~Eqef 494 (527)
T PF15066_consen 415 TLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEF 494 (527)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhh
Q 021727 187 EGFLFEYDRLLEENQNLRNQLQS 209 (308)
Q Consensus 187 e~L~kEYDRL~eE~~kLq~~l~~ 209 (308)
-.|+.||++--+|+-.-+.++..
T Consensus 495 LslqeEfQk~ekenl~ERqkLKs 517 (527)
T PF15066_consen 495 LSLQEEFQKHEKENLEERQKLKS 517 (527)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
No 495
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=30.40 E-value=4e+02 Score=23.95 Aligned_cols=65 Identities=12% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHH-HHHHHHHHHHHHHhHhhccc
Q 021727 148 EDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFE-YDRLLEENQNLRNQLQSLDW 212 (308)
Q Consensus 148 ~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kE-YDRL~eE~~kLq~~l~~~d~ 212 (308)
++..+..+++++.|++.++......+-.-.|+..++.|..+...- -+.|.++..+++.-.++..+
T Consensus 71 kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~ 136 (157)
T COG3352 71 KKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIK 136 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 496
>PRK14139 heat shock protein GrpE; Provisional
Probab=30.37 E-value=1.2e+02 Score=27.65 Aligned_cols=40 Identities=20% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhc
Q 021727 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSL 210 (308)
Q Consensus 171 el~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~ 210 (308)
++...+.+++.+++|.+.+...|-|+..|.++.++.....
T Consensus 33 e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE 72 (185)
T PRK14139 33 AAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQED 72 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.16 E-value=3.7e+02 Score=25.41 Aligned_cols=88 Identities=7% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHH
Q 021727 111 HYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFL 190 (308)
Q Consensus 111 sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~ 190 (308)
..+.++.+.+..+..+-++++++.. .....+.+...-+.++++++..++.+..+...++++-..--.+....+
T Consensus 125 ~~~~~lekaKk~Y~~acke~E~A~~-------~~~ka~~d~~~sk~~~eK~k~~~~~~~~~~e~aKn~Y~~~l~~~N~~q 197 (253)
T cd07676 125 TCWKQLESSKRRFERDCKEADRAQQ-------YFEKMDADINVTKADVEKARQQAQIRHQMAEDSKAEYSSYLQKFNKEQ 197 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred -HHHHHHHHHH-HHHHH
Q 021727 191 -FEYDRLLEEN-QNLRN 205 (308)
Q Consensus 191 -kEYDRL~eE~-~kLq~ 205 (308)
..|...+++. +.+|.
T Consensus 198 ~~~Y~e~mp~vfd~lQ~ 214 (253)
T cd07676 198 HEHYYTHIPNIFQKIQE 214 (253)
T ss_pred hhhHHHHHHHHHHHHHH
No 498
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=30.15 E-value=3.5e+02 Score=29.80 Aligned_cols=67 Identities=25% Similarity=0.290 Sum_probs=0.0
Q ss_pred hHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 021727 141 SEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (308)
Q Consensus 141 ~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l 207 (308)
.++.....+-++.+.++..+++.+.++.++.+...+...+.++++.+.+..+.+++.++-.+-.++.
T Consensus 512 ~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~ 578 (782)
T PRK00409 512 GEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQA 578 (782)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=30.10 E-value=3e+02 Score=26.62 Aligned_cols=57 Identities=23% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 152 TTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 152 ~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
++.++..++++.+++.+.+|-++...+.+-|+.|-++|-.+-..|-.+.+.++..+.
T Consensus 86 DrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~ 142 (292)
T KOG4005|consen 86 DRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELA 142 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
No 500
>PF15294 Leu_zip: Leucine zipper
Probab=29.73 E-value=2.1e+02 Score=27.91 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHH
Q 021727 144 IKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLF 191 (308)
Q Consensus 144 ~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~k 191 (308)
......|+.+|.+|+++|+..+...++....+-.+...++.|...++.
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!