Query 021727
Match_columns 308
No_of_seqs 123 out of 328
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 08:24:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ic2_A Tropomyosin alpha chain 95.0 0.25 8.6E-06 37.6 10.1 60 155-214 19-78 (81)
2 3hnw_A Uncharacterized protein 94.9 0.24 8.1E-06 41.7 10.6 49 157-205 83-131 (138)
3 3hnw_A Uncharacterized protein 94.5 0.22 7.5E-06 41.9 9.5 58 152-209 71-128 (138)
4 3u59_A Tropomyosin beta chain; 94.1 0.29 9.9E-06 38.8 8.9 60 155-214 22-81 (101)
5 3vkg_A Dynein heavy chain, cyt 93.4 0.17 5.9E-06 60.6 8.9 90 156-245 2014-2127(3245)
6 3a7p_A Autophagy protein 16; c 93.3 0.58 2E-05 40.2 9.9 59 146-204 72-130 (152)
7 3u1c_A Tropomyosin alpha-1 cha 93.0 0.57 2E-05 37.2 8.9 59 156-214 23-81 (101)
8 3oja_B Anopheles plasmodium-re 92.7 1.5 5.3E-05 43.0 13.5 55 154-208 521-575 (597)
9 2dfs_A Myosin-5A; myosin-V, in 92.3 0.59 2E-05 50.9 10.7 41 165-205 979-1019(1080)
10 3q8t_A Beclin-1; autophagy, AT 91.7 1.9 6.6E-05 33.9 10.4 54 155-208 24-77 (96)
11 3cl3_D NF-kappa-B essential mo 90.8 0.83 2.9E-05 38.2 7.6 97 109-205 4-104 (130)
12 2yy0_A C-MYC-binding protein; 90.5 0.45 1.5E-05 33.9 5.0 32 178-209 20-51 (53)
13 2jee_A YIIU; FTSZ, septum, coi 89.3 4.4 0.00015 31.3 10.1 54 148-208 19-72 (81)
14 3na7_A HP0958; flagellar bioge 89.3 2.9 0.0001 37.7 10.8 50 159-208 93-142 (256)
15 3qh9_A Liprin-beta-2; coiled-c 89.0 3 0.0001 32.3 8.9 54 146-199 23-76 (81)
16 3u1c_A Tropomyosin alpha-1 cha 88.0 6.2 0.00021 31.1 10.6 9 123-131 11-19 (101)
17 3u59_A Tropomyosin beta chain; 87.7 6.6 0.00022 30.8 10.6 51 157-207 45-95 (101)
18 2dfs_A Myosin-5A; myosin-V, in 87.5 1.4 4.8E-05 48.0 8.6 8 199-206 1031-1038(1080)
19 3a7o_A Autophagy protein 16; c 87.4 4.8 0.00016 30.5 9.0 55 154-208 16-70 (75)
20 3ol1_A Vimentin; structural ge 87.3 7.4 0.00025 31.5 10.9 19 182-200 88-106 (119)
21 3mq7_A Bone marrow stromal ant 86.9 7.3 0.00025 32.1 10.5 34 178-211 79-112 (121)
22 2v71_A Nuclear distribution pr 86.1 11 0.00039 33.2 12.2 22 186-207 90-111 (189)
23 3oja_B Anopheles plasmodium-re 85.4 14 0.00046 36.3 13.8 61 148-208 522-582 (597)
24 3s4r_A Vimentin; alpha-helix, 83.7 7.7 0.00026 30.3 9.0 24 106-129 15-38 (93)
25 3na7_A HP0958; flagellar bioge 82.4 27 0.00093 31.2 14.3 43 157-199 112-154 (256)
26 3q8t_A Beclin-1; autophagy, AT 82.3 9.8 0.00034 29.8 9.2 60 149-208 11-70 (96)
27 3a7p_A Autophagy protein 16; c 82.1 10 0.00036 32.4 9.8 20 178-197 111-130 (152)
28 2jee_A YIIU; FTSZ, septum, coi 80.9 17 0.00059 28.0 10.3 9 196-204 53-61 (81)
29 1ic2_A Tropomyosin alpha chain 80.7 9.4 0.00032 28.7 8.3 47 160-206 10-56 (81)
30 3vkg_A Dynein heavy chain, cyt 79.3 9.2 0.00031 46.3 11.4 43 162-204 2013-2055(3245)
31 3mq9_A Bone marrow stromal ant 78.4 5.5 0.00019 38.2 7.9 27 107-133 397-423 (471)
32 1s94_A S-syntaxin; three helix 77.7 26 0.0009 29.5 11.2 29 180-208 122-150 (180)
33 3tnu_B Keratin, type II cytosk 77.3 24 0.00081 28.6 10.3 23 177-199 89-111 (129)
34 2efr_A General control protein 77.1 28 0.00097 29.7 11.1 52 155-206 76-127 (155)
35 3o0z_A RHO-associated protein 76.2 23 0.0008 30.7 10.4 61 151-211 92-156 (168)
36 3jsv_C NF-kappa-B essential mo 76.1 5.4 0.00018 31.6 5.8 30 158-187 42-71 (94)
37 3nmd_A CGMP dependent protein 75.7 7.9 0.00027 29.3 6.4 35 158-192 21-55 (72)
38 3viq_B Mating-type switching p 75.5 3.9 0.00013 31.9 4.7 19 154-172 6-24 (85)
39 3i00_A HIP-I, huntingtin-inter 74.9 20 0.00067 29.4 9.2 56 150-208 16-78 (120)
40 3mq7_A Bone marrow stromal ant 74.9 34 0.0012 28.1 10.4 83 105-190 23-105 (121)
41 2v4h_A NF-kappa-B essential mo 74.5 9.9 0.00034 30.9 7.1 17 190-206 89-105 (110)
42 4h22_A Leucine-rich repeat fli 74.2 32 0.0011 27.6 9.9 47 150-196 31-77 (103)
43 4h22_A Leucine-rich repeat fli 74.2 28 0.00094 28.0 9.5 59 153-211 27-85 (103)
44 3iox_A AGI/II, PA; alpha helix 73.8 16 0.00056 36.6 9.9 48 148-202 47-94 (497)
45 4gkw_A Spindle assembly abnorm 73.1 14 0.00048 31.3 7.9 65 154-218 23-87 (167)
46 3i00_A HIP-I, huntingtin-inter 72.3 28 0.00095 28.4 9.4 36 153-188 44-79 (120)
47 3ghg_A Fibrinogen alpha chain; 71.4 44 0.0015 33.9 12.3 17 197-213 175-191 (562)
48 3tnu_A Keratin, type I cytoske 71.1 25 0.00084 28.6 8.9 24 176-199 90-113 (131)
49 3cvf_A Homer-3, homer protein 69.0 36 0.0012 26.0 9.2 50 159-208 23-72 (79)
50 3oja_A Leucine-rich immune mol 68.2 22 0.00076 34.1 9.4 41 168-208 426-466 (487)
51 4etp_A Kinesin-like protein KA 68.2 16 0.00054 35.3 8.3 51 154-204 8-58 (403)
52 2v71_A Nuclear distribution pr 67.0 46 0.0016 29.3 10.3 21 179-199 90-110 (189)
53 3tul_A Cell invasion protein S 66.0 63 0.0021 27.6 10.7 34 102-135 6-41 (158)
54 3cve_A Homer protein homolog 1 66.0 40 0.0014 25.3 9.9 52 158-209 16-67 (72)
55 2inr_A DNA topoisomerase 4 sub 64.6 55 0.0019 32.9 11.6 23 94-117 398-420 (514)
56 1deb_A APC protein, adenomatou 64.1 36 0.0012 24.1 7.3 40 150-189 11-50 (54)
57 1gd2_E Transcription factor PA 64.1 15 0.00053 27.3 5.7 36 157-192 30-65 (70)
58 3u06_A Protein claret segregat 63.9 19 0.00064 35.0 7.9 52 153-204 7-58 (412)
59 3azd_A Short alpha-tropomyosin 63.5 3.8 0.00013 27.0 2.0 30 178-207 5-34 (37)
60 1g6u_A Domain swapped dimer; d 62.9 21 0.00072 24.2 5.6 13 117-129 3-15 (48)
61 3plt_A Sphingolipid long chain 62.7 90 0.0031 28.3 11.8 28 158-185 133-160 (234)
62 2lw1_A ABC transporter ATP-bin 61.2 51 0.0017 24.9 8.5 55 150-204 23-83 (89)
63 2yy0_A C-MYC-binding protein; 61.1 14 0.00049 26.0 4.8 25 144-168 21-45 (53)
64 2efr_A General control protein 61.0 77 0.0026 26.9 10.8 13 147-159 75-87 (155)
65 2no2_A HIP-I, huntingtin-inter 60.9 61 0.0021 25.8 11.8 41 157-197 55-102 (107)
66 3m9b_A Proteasome-associated A 60.8 11 0.00037 34.7 5.3 28 178-205 69-96 (251)
67 3rrk_A V-type ATPase 116 kDa s 60.5 41 0.0014 31.0 9.3 74 155-241 225-299 (357)
68 1ses_A Seryl-tRNA synthetase; 60.2 30 0.001 33.5 8.6 17 156-172 42-58 (421)
69 3ilw_A DNA gyrase subunit A; D 60.1 99 0.0034 30.8 12.4 22 94-116 360-381 (470)
70 3swk_A Vimentin; cytoskeleton, 60.0 55 0.0019 24.9 9.3 18 173-190 45-62 (86)
71 1hs7_A Syntaxin VAM3; UP-and-D 60.0 16 0.00053 29.0 5.4 50 154-208 38-88 (97)
72 4dzn_A Coiled-coil peptide CC- 59.9 19 0.00065 22.8 4.6 16 152-167 5-20 (33)
73 1wle_A Seryl-tRNA synthetase; 59.8 54 0.0019 32.7 10.6 11 238-248 196-206 (501)
74 2v66_B Nuclear distribution pr 58.7 66 0.0023 26.0 9.0 18 187-204 38-55 (111)
75 1gk4_A Vimentin; intermediate 58.4 57 0.0019 24.6 9.0 35 171-205 34-68 (84)
76 1m1j_C Fibrinogen gamma chain; 57.9 61 0.0021 31.6 10.3 48 157-204 85-132 (409)
77 3s4r_A Vimentin; alpha-helix, 57.8 63 0.0022 25.0 10.2 32 176-207 55-86 (93)
78 3tnu_A Keratin, type I cytoske 57.5 75 0.0026 25.7 10.0 27 178-204 85-111 (131)
79 3nmd_A CGMP dependent protein 57.5 42 0.0014 25.3 7.1 14 157-170 41-54 (72)
80 3m91_A Proteasome-associated A 57.4 38 0.0013 23.8 6.5 21 169-189 29-49 (51)
81 4emc_A Monopolin complex subun 56.7 42 0.0014 29.6 8.1 76 152-230 23-104 (190)
82 4ani_A Protein GRPE; chaperone 56.6 20 0.00067 32.1 6.1 36 151-186 61-96 (213)
83 1t3j_A Mitofusin 1; coiled coi 56.2 40 0.0014 26.7 7.2 39 154-196 52-90 (96)
84 3jsv_C NF-kappa-B essential mo 56.1 51 0.0017 26.0 7.7 33 157-193 24-56 (94)
85 1fio_A SSO1 protein; four heli 56.1 89 0.003 26.1 14.3 61 146-206 46-106 (196)
86 3q0x_A Centriole protein; cent 56.1 36 0.0012 30.8 7.8 49 152-200 174-222 (228)
87 1lwu_C Fibrinogen gamma chain; 55.7 28 0.00097 32.9 7.3 37 171-207 20-56 (323)
88 3etw_A Adhesin A; antiparallel 55.6 84 0.0029 25.7 9.3 43 157-200 45-87 (119)
89 3trt_A Vimentin; cytoskeleton, 55.3 39 0.0013 24.6 6.7 41 156-196 35-75 (77)
90 2dq0_A Seryl-tRNA synthetase; 54.9 54 0.0018 32.1 9.5 11 238-248 170-180 (455)
91 3w03_C DNA repair protein XRCC 54.7 14 0.00046 32.6 4.6 30 179-208 154-183 (184)
92 3qne_A Seryl-tRNA synthetase, 54.2 53 0.0018 32.7 9.4 11 239-249 163-173 (485)
93 1ci6_A Transcription factor AT 54.0 42 0.0014 24.1 6.5 19 178-196 38-56 (63)
94 3viq_B Mating-type switching p 54.0 43 0.0015 26.0 6.8 60 147-208 6-65 (85)
95 2zqm_A Prefoldin beta subunit 54.0 73 0.0025 24.5 9.2 25 178-202 85-109 (117)
96 1t6f_A Geminin; coiled-coil, c 53.9 25 0.00086 23.2 4.6 19 156-174 7-25 (37)
97 2oto_A M protein; helical coil 53.4 81 0.0028 26.1 9.2 8 186-193 73-80 (155)
98 4emc_A Monopolin complex subun 53.4 1.1E+02 0.0036 27.1 10.1 32 148-179 26-57 (190)
99 4etp_A Kinesin-like protein KA 53.3 30 0.001 33.3 7.3 13 159-171 6-18 (403)
100 1nfn_A Apolipoprotein E3; lipi 53.3 37 0.0013 29.4 7.3 56 154-209 104-161 (191)
101 2eqb_B RAB guanine nucleotide 53.2 83 0.0028 24.9 8.8 18 191-208 76-93 (97)
102 1dn1_B Syntaxin 1A, syntaxin b 52.6 80 0.0028 28.4 9.7 26 180-205 114-139 (267)
103 3qne_A Seryl-tRNA synthetase, 52.5 32 0.0011 34.3 7.5 23 180-202 81-103 (485)
104 3plt_A Sphingolipid long chain 52.1 83 0.0028 28.6 9.5 38 154-191 116-159 (234)
105 1wt6_A Myotonin-protein kinase 51.9 78 0.0027 24.3 7.9 8 196-203 57-64 (81)
106 3tnu_B Keratin, type II cytosk 51.0 95 0.0032 24.9 10.8 27 178-204 83-109 (129)
107 3s9g_A Protein hexim1; cyclin 50.9 94 0.0032 24.8 9.1 27 182-208 63-89 (104)
108 2xv5_A Lamin-A/C; structural p 50.4 76 0.0026 23.7 7.6 27 178-204 20-46 (74)
109 1m1j_B Fibrinogen beta chain; 50.4 1.3E+02 0.0045 29.8 11.5 19 189-207 173-191 (464)
110 2wt7_A Proto-oncogene protein 50.3 52 0.0018 23.5 6.5 16 180-195 40-55 (63)
111 1wle_A Seryl-tRNA synthetase; 49.6 61 0.0021 32.3 9.0 17 182-198 128-144 (501)
112 1wlq_A Geminin; coiled-coil; 2 49.0 39 0.0013 26.1 5.8 21 182-202 43-63 (83)
113 2v4h_A NF-kappa-B essential mo 48.2 1.1E+02 0.0037 24.8 9.8 15 179-193 64-78 (110)
114 2dq0_A Seryl-tRNA synthetase; 47.8 36 0.0012 33.3 7.0 20 182-201 81-100 (455)
115 3okq_A BUD site selection prot 47.7 43 0.0015 28.3 6.4 39 163-201 54-100 (141)
116 1x8y_A Lamin A/C; structural p 47.6 89 0.003 23.6 8.2 34 171-204 36-69 (86)
117 2wt7_A Proto-oncogene protein 47.2 65 0.0022 22.9 6.6 28 179-206 32-59 (63)
118 2oto_A M protein; helical coil 46.9 1.2E+02 0.0041 25.0 10.5 12 115-126 30-41 (155)
119 2xcs_B DNA gyrase subunit B, D 46.6 1.3E+02 0.0043 31.5 11.0 22 94-116 581-602 (692)
120 1uii_A Geminin; human, DNA rep 46.3 56 0.0019 25.3 6.3 36 171-206 40-75 (83)
121 2ke4_A CDC42-interacting prote 45.6 79 0.0027 24.8 7.4 33 180-212 58-90 (98)
122 1t2k_D Cyclic-AMP-dependent tr 45.1 75 0.0026 22.3 6.6 14 180-193 39-52 (61)
123 2nov_A DNA topoisomerase 4 sub 44.9 61 0.0021 32.5 8.1 20 94-114 374-393 (496)
124 2w6b_A RHO guanine nucleotide 44.5 85 0.0029 22.5 6.5 36 144-183 12-47 (56)
125 1go4_E MAD1 (mitotic arrest de 44.3 90 0.0031 24.8 7.5 19 191-209 75-93 (100)
126 4b4t_K 26S protease regulatory 43.9 29 0.001 33.7 5.6 29 177-205 63-91 (428)
127 4dzn_A Coiled-coil peptide CC- 43.7 47 0.0016 21.0 4.5 16 157-172 3-18 (33)
128 1x8y_A Lamin A/C; structural p 42.6 56 0.0019 24.8 5.9 17 182-198 64-80 (86)
129 1nkp_B MAX protein, MYC proto- 42.3 53 0.0018 24.3 5.7 30 179-208 49-78 (83)
130 3o0z_A RHO-associated protein 42.2 1.7E+02 0.0057 25.3 10.2 17 196-212 116-132 (168)
131 4ani_A Protein GRPE; chaperone 42.1 41 0.0014 30.0 5.8 32 177-208 66-97 (213)
132 2w6b_A RHO guanine nucleotide 41.3 75 0.0026 22.8 5.9 29 145-173 6-34 (56)
133 1f5n_A Interferon-induced guan 41.2 1.6E+02 0.0054 29.8 10.7 19 188-206 564-582 (592)
134 3htk_A Structural maintenance 41.0 86 0.003 21.6 7.3 29 157-185 27-55 (60)
135 2wvr_A Geminin; DNA replicatio 40.9 58 0.002 29.1 6.5 47 150-200 116-162 (209)
136 3aon_A V-type sodium ATPase su 40.9 76 0.0026 27.9 7.4 40 171-210 25-64 (217)
137 3bas_A Myosin heavy chain, str 40.0 1.2E+02 0.0041 23.0 10.6 32 177-208 49-80 (89)
138 1go4_E MAD1 (mitotic arrest de 39.8 57 0.002 25.9 5.7 32 178-209 13-44 (100)
139 1hjb_A Ccaat/enhancer binding 39.7 36 0.0012 26.3 4.4 20 178-197 51-70 (87)
140 3lss_A Seryl-tRNA synthetase; 39.6 1.4E+02 0.0047 29.7 9.7 28 179-206 113-140 (484)
141 3lay_A Zinc resistance-associa 39.6 1.8E+02 0.0062 24.9 10.0 58 156-213 85-146 (175)
142 3s84_A Apolipoprotein A-IV; fo 38.8 1.4E+02 0.0049 27.1 9.1 16 178-193 67-82 (273)
143 1ez3_A Syntaxin-1A; three heli 38.5 1.4E+02 0.0047 23.2 14.4 27 180-206 91-117 (127)
144 3efg_A Protein SLYX homolog; x 37.8 1.1E+02 0.0036 23.0 6.7 33 176-208 27-59 (78)
145 3htk_A Structural maintenance 37.8 98 0.0033 21.3 8.3 27 180-206 29-55 (60)
146 3cvf_A Homer-3, homer protein 37.7 1.3E+02 0.0046 22.8 9.8 55 144-198 15-69 (79)
147 3kqg_A Langerin, C-type lectin 37.6 31 0.001 28.2 4.0 14 178-191 24-37 (182)
148 2lw1_A ABC transporter ATP-bin 37.3 1.2E+02 0.0041 22.8 7.1 20 146-165 26-45 (89)
149 1t2k_D Cyclic-AMP-dependent tr 37.2 1E+02 0.0036 21.5 6.3 8 189-196 41-48 (61)
150 1jcd_A Major outer membrane li 37.0 1.1E+02 0.0037 21.5 7.3 10 157-166 12-21 (52)
151 3v86_A De novo design helix; c 36.9 51 0.0017 19.9 3.7 14 156-169 7-20 (27)
152 1gs9_A Apolipoprotein E, APOE4 36.8 85 0.0029 26.6 6.8 56 154-209 104-161 (165)
153 3sja_C Golgi to ER traffic pro 36.1 1.1E+02 0.0037 22.6 6.3 26 188-213 36-61 (65)
154 4e61_A Protein BIM1; EB1-like 35.7 77 0.0026 25.5 5.9 15 178-192 26-40 (106)
155 3l4q_C Phosphatidylinositol 3- 35.1 61 0.0021 28.0 5.6 25 181-205 21-45 (170)
156 1gk4_A Vimentin; intermediate 35.1 1.4E+02 0.0048 22.3 10.4 7 191-197 71-77 (84)
157 2no2_A HIP-I, huntingtin-inter 35.0 1.7E+02 0.0057 23.2 8.7 17 111-127 5-21 (107)
158 3a5c_G V-type ATP synthase sub 34.8 1.1E+02 0.0036 27.2 7.3 45 170-214 16-60 (223)
159 1nlw_A MAD protein, MAX dimeri 33.9 86 0.0029 23.5 5.6 13 119-131 16-28 (80)
160 2ocy_A RAB guanine nucleotide 33.8 2.2E+02 0.0075 24.2 12.0 24 108-131 7-30 (154)
161 2l7b_A Apolipoprotein E, APO-E 33.7 1E+02 0.0035 28.7 7.3 57 154-210 112-170 (307)
162 3vem_A Helicase protein MOM1; 33.6 1.6E+02 0.0054 24.0 7.5 16 186-201 70-85 (115)
163 4dk0_A Putative MACA; alpha-ha 33.0 1.9E+02 0.0064 26.1 9.0 12 115-126 71-82 (369)
164 1lrz_A FEMA, factor essential 32.9 1.2E+02 0.0043 28.5 8.0 79 154-237 252-332 (426)
165 3fx0_A NF-kappa-B essential mo 32.5 59 0.002 25.7 4.6 41 158-202 40-80 (96)
166 2dq3_A Seryl-tRNA synthetase; 32.3 58 0.002 31.5 5.6 31 177-207 75-105 (425)
167 3q0x_A Centriole protein; cent 32.3 1.6E+02 0.0055 26.5 8.1 51 154-204 169-219 (228)
168 3a7o_A Autophagy protein 16; c 32.2 1.6E+02 0.0055 22.1 8.4 42 156-204 32-73 (75)
169 2zqm_A Prefoldin beta subunit 31.4 1.3E+02 0.0045 22.9 6.6 27 180-206 80-106 (117)
170 2dq3_A Seryl-tRNA synthetase; 31.0 91 0.0031 30.1 6.7 11 239-249 150-160 (425)
171 1s1c_X RHO-associated, coiled- 30.8 63 0.0021 24.2 4.3 30 154-183 4-33 (71)
172 1m1j_C Fibrinogen gamma chain; 30.8 3.5E+02 0.012 26.2 10.8 29 179-207 100-128 (409)
173 2efk_A CDC42-interacting prote 30.4 2.7E+02 0.0094 24.3 10.9 94 105-205 121-216 (301)
174 2efl_A Formin-binding protein 30.3 2.3E+02 0.0078 24.7 8.8 13 192-204 145-157 (305)
175 3ghg_A Fibrinogen alpha chain; 30.2 1.3E+02 0.0046 30.4 7.8 69 160-228 114-183 (562)
176 2wt7_B Transcription factor MA 30.1 66 0.0023 25.1 4.5 26 178-203 63-88 (90)
177 1fxk_A Prefoldin; archaeal pro 30.0 1.8E+02 0.006 21.9 9.6 16 191-206 86-101 (107)
178 2wvr_A Geminin; DNA replicatio 29.7 1.4E+02 0.0047 26.7 7.0 38 168-205 106-143 (209)
179 2ve7_A Kinetochore protein HEC 29.7 52 0.0018 30.6 4.6 22 145-166 188-209 (315)
180 1uii_A Geminin; human, DNA rep 29.1 1.1E+02 0.0039 23.5 5.6 13 158-170 48-60 (83)
181 3v1a_A Computational design, M 29.0 68 0.0023 22.3 3.9 20 178-197 28-47 (48)
182 3rvy_A ION transport protein; 28.7 39 0.0013 29.9 3.5 22 94-115 215-237 (285)
183 3u06_A Protein claret segregat 28.2 1.4E+02 0.0047 28.8 7.5 16 155-170 23-38 (412)
184 1wlq_A Geminin; coiled-coil; 2 28.1 1.5E+02 0.0052 22.8 6.1 16 157-172 39-54 (83)
185 4ad8_A DNA repair protein RECN 27.9 1.3E+02 0.0046 29.0 7.4 28 178-205 208-241 (517)
186 1nkp_A C-MYC, MYC proto-oncoge 27.5 1.2E+02 0.0042 22.9 5.6 28 181-208 56-83 (88)
187 1fxk_C Protein (prefoldin); ar 27.4 2.1E+02 0.0071 22.6 7.3 28 178-205 103-130 (133)
188 1gd2_E Transcription factor PA 27.2 1.4E+02 0.0047 22.1 5.6 27 180-206 32-58 (70)
189 1afo_A Glycophorin A; integral 27.2 43 0.0015 22.5 2.5 18 93-110 21-38 (40)
190 3sjb_C Golgi to ER traffic pro 27.1 2.1E+02 0.0073 22.4 7.0 19 154-172 54-72 (93)
191 1fxk_A Prefoldin; archaeal pro 26.9 1.6E+02 0.0055 22.1 6.3 20 178-197 80-99 (107)
192 3vjf_A WA20; protein design, d 26.9 2.1E+02 0.0073 21.9 7.0 44 157-200 8-51 (102)
193 2j5u_A MREC protein; bacterial 26.8 33 0.0011 31.0 2.6 18 192-209 44-61 (255)
194 2xdj_A Uncharacterized protein 26.7 2E+02 0.0068 21.8 6.7 20 178-197 49-68 (83)
195 2avr_X Adhesion A; antiparalle 26.6 2.6E+02 0.009 22.8 11.6 44 158-202 46-89 (119)
196 2ve7_C Kinetochore protein NUF 26.6 46 0.0016 30.1 3.5 9 95-103 126-134 (250)
197 2zxx_A Geminin; coiled-coil, c 26.1 1.3E+02 0.0043 23.0 5.3 13 158-170 36-48 (79)
198 2zxx_A Geminin; coiled-coil, c 26.1 1.9E+02 0.0065 22.0 6.3 18 149-166 34-51 (79)
199 2riq_A Poly [ADP-ribose] polym 25.8 74 0.0025 27.2 4.5 36 180-215 22-59 (160)
200 3m91_A Proteasome-associated A 25.7 1.7E+02 0.0059 20.4 6.6 25 156-180 23-47 (51)
201 1use_A VAsp, vasodilator-stimu 25.7 1.4E+02 0.0049 20.4 5.0 12 160-171 19-30 (45)
202 1uix_A RHO-associated kinase; 25.6 82 0.0028 23.6 4.1 19 181-199 15-33 (71)
203 3lss_A Seryl-tRNA synthetase; 25.6 2E+02 0.0069 28.5 8.2 7 240-246 186-192 (484)
204 1ik9_A DNA repair protein XRCC 25.6 75 0.0026 28.2 4.7 12 178-189 154-165 (213)
205 2x3v_A Syndapin I, protein kin 25.4 3.7E+02 0.013 24.1 10.6 43 156-198 183-225 (337)
206 3he5_B Synzip2; heterodimeric 25.4 1.7E+02 0.0057 20.1 6.8 22 178-199 25-46 (52)
207 3swk_A Vimentin; cytoskeleton, 25.3 2.1E+02 0.0072 21.6 6.6 6 126-131 5-10 (86)
208 2bzb_A Conserved domain protei 25.3 47 0.0016 24.0 2.7 17 189-205 34-50 (62)
209 3cve_A Homer protein homolog 1 25.2 2.1E+02 0.0073 21.3 9.9 46 147-192 12-57 (72)
210 3r2p_A Apolipoprotein A-I; amp 25.0 1.4E+02 0.0048 25.2 6.1 9 178-186 134-142 (185)
211 3haj_A Human pacsin2 F-BAR; pa 24.9 3.1E+02 0.011 26.5 9.3 43 156-198 185-227 (486)
212 2k48_A Nucleoprotein; viral pr 24.6 2.7E+02 0.0093 22.3 9.7 25 152-176 38-62 (107)
213 3u0c_A Invasin IPAB, 62 kDa an 24.5 3.5E+02 0.012 23.6 9.8 28 102-129 54-83 (201)
214 3qwe_A GMIP, GEM-interacting p 23.5 1.9E+02 0.0066 26.6 7.1 13 192-204 141-153 (279)
215 2lf0_A Uncharacterized protein 23.4 2.1E+02 0.0072 23.5 6.5 20 155-174 9-28 (123)
216 2wuj_A Septum site-determining 23.2 76 0.0026 22.3 3.4 14 193-206 36-49 (57)
217 2fxo_A Myosin heavy chain, car 23.1 2.9E+02 0.0099 22.1 11.1 42 170-211 83-124 (129)
218 2dgc_A Protein (GCN4); basic d 22.8 1.6E+02 0.0055 21.0 5.2 29 179-207 32-60 (63)
219 1gk6_A Vimentin; intermediate 22.4 1.8E+02 0.0062 20.4 5.3 24 180-203 17-40 (59)
220 1dkg_A Nucleotide exchange fac 22.4 1E+02 0.0036 26.8 4.9 14 193-206 62-75 (197)
221 2v0o_A FCHO2, FCH domain only 22.2 3E+02 0.01 23.6 8.0 81 124-204 76-156 (276)
222 1nkp_B MAX protein, MYC proto- 22.1 1.2E+02 0.004 22.4 4.5 10 178-187 69-78 (83)
223 2f1m_A Acriflavine resistance 22.1 3.7E+02 0.013 23.1 8.6 31 178-208 99-129 (277)
224 2j5u_A MREC protein; bacterial 21.9 65 0.0022 29.0 3.6 17 150-166 27-43 (255)
225 1g6u_A Domain swapped dimer; d 21.8 1.9E+02 0.0065 19.5 6.2 16 157-172 21-36 (48)
226 2w83_C C-JUN-amino-terminal ki 21.8 2.7E+02 0.0091 21.1 8.0 30 180-209 33-62 (77)
227 2b5u_A Colicin E3; high resolu 21.4 6.3E+02 0.022 25.5 10.7 49 158-206 316-364 (551)
228 2w6a_A ARF GTPase-activating p 21.1 2.4E+02 0.0084 20.5 7.0 36 171-206 21-56 (63)
229 2dgc_A Protein (GCN4); basic d 21.0 1.6E+02 0.0056 21.0 4.9 7 160-166 34-40 (63)
230 2kxh_B Peptide of FAR upstream 20.4 51 0.0017 21.0 1.7 15 55-69 9-23 (31)
231 2efl_A Formin-binding protein 20.4 4.2E+02 0.014 22.9 13.8 38 164-201 124-161 (305)
232 3hhm_B NISH2 P85alpha; PI3KCA, 20.2 4.5E+02 0.015 25.0 9.2 50 157-206 206-255 (373)
233 2xv5_A Lamin-A/C; structural p 20.0 2.7E+02 0.0093 20.6 8.4 20 179-198 38-57 (74)
No 1
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=95.01 E-value=0.25 Score=37.65 Aligned_cols=60 Identities=20% Similarity=0.235 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccccc
Q 021727 155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRL 214 (308)
Q Consensus 155 ~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~ 214 (308)
....+.++.+++..++...+++.++.+|++...++..++|+..+.....+.++...++..
T Consensus 19 ~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~ 78 (81)
T 1ic2_A 19 LDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKA 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446677888888888888889999999999999999999999999999998888776654
No 2
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.90 E-value=0.24 Score=41.74 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 157 evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~ 205 (308)
++++++.|+...+.++.+++-..+.++++.+.+.++++.|..+..+|+.
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334455555555555555555555555543
No 3
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.52 E-value=0.22 Score=41.93 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhh
Q 021727 152 TTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (308)
Q Consensus 152 ~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~ 209 (308)
-.++.+.+.|+.+++.+++++...+.++..++-+.+++.++...|.++++.|+.++..
T Consensus 71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777776666677777777777777777777777777666543
No 4
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.13 E-value=0.29 Score=38.77 Aligned_cols=60 Identities=13% Similarity=0.174 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccccc
Q 021727 155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRL 214 (308)
Q Consensus 155 ~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~ 214 (308)
....+.++.+++..+.+..+.+.++.+|+++..++..++|+..+.....+..+...+++.
T Consensus 22 ~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~ 81 (101)
T 3u59_A 22 IDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKA 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788888888888889999999999999999999998888887777666554
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.40 E-value=0.17 Score=60.61 Aligned_cols=90 Identities=14% Similarity=0.219 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhcccccc-------ccCccceeeccc-
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLS-------HSDFRTVYWNAE- 227 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~s-------~~~~k~~~~~~~- 227 (308)
+++++++.+++..+.+|..+++.+..+..+.+.++.+|+....|.++|+.+.+.-.++.. +-++-|.=|...
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~ 2093 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQS 2093 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHH
Confidence 455667778888888888888888899999999999999999998888777665555443 334445555322
Q ss_pred ----------------cccccccchhhhhhhhhh
Q 021727 228 ----------------KTASSTYCAAKVLDFELL 245 (308)
Q Consensus 228 ----------------~~~~~~~~~~~~~~~~~~ 245 (308)
-+|--+||.+=.-+||..
T Consensus 2094 ~~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~ 2127 (3245)
T 3vkg_A 2094 ENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTD 2127 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHH
Confidence 123457887777777754
No 6
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=93.31 E-value=0.58 Score=40.20 Aligned_cols=59 Identities=12% Similarity=0.205 Sum_probs=48.1
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727 146 ALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (308)
Q Consensus 146 ~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq 204 (308)
.+..+...+..++.+|+.+++.+.+.+.....++.+|+-|..-++..-.+|.+||+.|-
T Consensus 72 ~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 72 ILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666778888999999999988888888889999998888888888888887753
No 7
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.03 E-value=0.57 Score=37.20 Aligned_cols=59 Identities=19% Similarity=0.141 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccccc
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRL 214 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~ 214 (308)
.+.+.++.+++..+.+..+.+.++.+|.+...++..+.|+..+.....+.++...+++.
T Consensus 23 drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~ 81 (101)
T 3u1c_A 23 DRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENA 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777788889999999999999999999888888777777666654
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.68 E-value=1.5 Score=43.05 Aligned_cols=55 Identities=22% Similarity=0.220 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+..++++++++.+++.++++..+++.+.++++.+...+...++.+|.+++..++.
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 521 KLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 3344555566665556666666666677777777777777777777666554444
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.33 E-value=0.59 Score=50.87 Aligned_cols=41 Identities=12% Similarity=0.104 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727 165 LETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 165 Lk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~ 205 (308)
.++.+.++...+.+++.++++.+.+.+|++.+.+++++++.
T Consensus 979 ~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~ 1019 (1080)
T 2dfs_A 979 AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH 1019 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444445555555555555555555555444443
No 10
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=91.74 E-value=1.9 Score=33.93 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 155 ~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
.+++++|+++=...+.++...+.+.+.|..|-+..-++|..+.-+.-..++...
T Consensus 24 ~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~ 77 (96)
T 3q8t_A 24 IQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELK 77 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555545445555455555555555555555555544444433444333
No 11
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=90.79 E-value=0.83 Score=38.19 Aligned_cols=97 Identities=16% Similarity=0.245 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 021727 109 LHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTT----LKLKLKDLESELETKSKEANAAETNAVALRK 184 (308)
Q Consensus 109 l~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~----l~~evekLk~eLk~k~kel~kae~d~eaLKK 184 (308)
+.+++.+|-..+..++++....+++++..............|++. ..-.+++|+-+.+..+.+++-...-...=|.
T Consensus 4 vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~eEKr 83 (130)
T 3cl3_D 4 ASGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKR 83 (130)
T ss_dssp -----------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666555544443332111011111122223222 2235677777777777777666555666788
Q ss_pred HHhhHHHHHHHHHHHHHHHHH
Q 021727 185 QSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 185 Qae~L~kEYDRL~eE~~kLq~ 205 (308)
...+|+-.|+.|..||++.-+
T Consensus 84 kLAqLQ~AY~~LfqeYd~~lK 104 (130)
T 3cl3_D 84 KLAQLQVAYHQLFQEYDNHIK 104 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998433
No 12
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=90.49 E-value=0.45 Score=33.93 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhh
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~ 209 (308)
|+++||..-+.|...|+.|.++++.++.++..
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55666666666666677777777777766653
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=89.29 E-value=4.4 Score=31.34 Aligned_cols=54 Identities=22% Similarity=0.340 Sum_probs=34.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 148 EDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 148 ~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
.+.|+-+.-|+++||.+-..... +.+.++.+.+.+..|..+|.+|++.-+..+.
T Consensus 19 vdtI~lLqmEieELKekN~~L~~-------e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQ-------EVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666655554443 5667777777788888888888876555544
No 14
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=89.29 E-value=2.9 Score=37.70 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 159 KDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 159 ekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+.|..|++..++++...+.++..+-.+.+.+..+.+.+.++...++..+.
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~ 142 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555544444455555555555555555555555555554444443
No 15
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=88.96 E-value=3 Score=32.29 Aligned_cols=54 Identities=24% Similarity=0.283 Sum_probs=45.1
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHH
Q 021727 146 ALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEE 199 (308)
Q Consensus 146 ~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE 199 (308)
...-|+..|+-.+++++.|=-+.+++|+..+.++..|+.|.++=..|..||.++
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344566778888888888888888899999999999999999999988888655
No 16
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=87.96 E-value=6.2 Score=31.12 Aligned_cols=9 Identities=22% Similarity=0.361 Sum_probs=3.5
Q ss_pred HHHHHhccc
Q 021727 123 MEAIKNQSR 131 (308)
Q Consensus 123 ~ealkKQa~ 131 (308)
+.+++-+++
T Consensus 11 m~~lk~e~e 19 (101)
T 3u1c_A 11 MQMLKLDKE 19 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333443333
No 17
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=87.72 E-value=6.6 Score=30.80 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 021727 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (308)
Q Consensus 157 evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l 207 (308)
++..|+..+...+.++.+++..+...+.+.+.-.+..+.--.+...|...+
T Consensus 45 ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 45 EQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344434333333333333333333333333333332223333444433
No 18
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.48 E-value=1.4 Score=47.98 Aligned_cols=8 Identities=25% Similarity=0.476 Sum_probs=3.0
Q ss_pred HHHHHHHh
Q 021727 199 ENQNLRNQ 206 (308)
Q Consensus 199 E~~kLq~~ 206 (308)
|+++|+.|
T Consensus 1031 e~~~L~qq 1038 (1080)
T 2dfs_A 1031 QNTLLKTE 1038 (1080)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33334333
No 19
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=87.42 E-value=4.8 Score=30.46 Aligned_cols=55 Identities=25% Similarity=0.170 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+..-+..|+++|+.++.++...+.-+.-=-|-+|.|+.|.=.+.-|++-||++++
T Consensus 16 ~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~ 70 (75)
T 3a7o_A 16 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLS 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHH
Confidence 3446777888888888887766544433335567777777777777787887765
No 20
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=87.27 E-value=7.4 Score=31.53 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=8.8
Q ss_pred HHHHHhhHHHHHHHHHHHH
Q 021727 182 LRKQSEGFLFEYDRLLEEN 200 (308)
Q Consensus 182 LKKQae~L~kEYDRL~eE~ 200 (308)
|..|.++|..|.+=|..-|
T Consensus 88 LE~~iesL~eEl~FLKk~h 106 (119)
T 3ol1_A 88 LERKVESLQEEIAFLKKLH 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555544444333
No 21
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=86.92 E-value=7.3 Score=32.11 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhcc
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLD 211 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d 211 (308)
+++.|+.+..+...|-.||..+++.++-.++..+
T Consensus 79 EI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~ 112 (121)
T 3mq7_A 79 EITTLNHKLQDASAEVERLRRENQVLSVRIADKK 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhcc
Confidence 3445555555555666666666666665555333
No 22
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=86.12 E-value=11 Score=33.18 Aligned_cols=22 Identities=5% Similarity=-0.031 Sum_probs=13.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHhH
Q 021727 186 SEGFLFEYDRLLEENQNLRNQL 207 (308)
Q Consensus 186 ae~L~kEYDRL~eE~~kLq~~l 207 (308)
...|++|...|.+.++.++.++
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~i 111 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666555443
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.44 E-value=14 Score=36.27 Aligned_cols=61 Identities=13% Similarity=0.046 Sum_probs=38.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 148 EDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 148 ~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
..++....+++++.+.+++..+++....+...+..|+|.+.+.+|-+.+..|..+|.+.+.
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 522 LRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344555556666666666666666666666677777777777776666666666665554
No 24
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=83.68 E-value=7.7 Score=30.25 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 021727 106 IDRLHHYIRELRIRRKTMEAIKNQ 129 (308)
Q Consensus 106 I~Rl~sLI~eLa~le~~~ealkKQ 129 (308)
=+|+.++|.....++.+...+..+
T Consensus 15 NdRlAsyIdKVR~LEqqN~~Le~~ 38 (93)
T 3s4r_A 15 NDRFANLIDKVRFLEQQNKILLAE 38 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777777777766666443
No 25
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=82.40 E-value=27 Score=31.24 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHH
Q 021727 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEE 199 (308)
Q Consensus 157 evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE 199 (308)
++.++..+++.++.++...+..++.++...+....++|.-..+
T Consensus 112 eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e 154 (256)
T 3na7_A 112 EIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKN 154 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444333
No 26
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=82.28 E-value=9.8 Score=29.82 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=31.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 149 DQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 149 ~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
.++..+..+-..|-.+|+..+++-.....++.+++.+++.+..+-.+.-.+|+..+.++.
T Consensus 11 ~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~ 70 (96)
T 3q8t_A 11 RELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQL 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555555555555555555555555555555555555544433
No 27
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=82.08 E-value=10 Score=32.42 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=9.1
Q ss_pred HHHHHHHHHhhHHHHHHHHH
Q 021727 178 NAVALRKQSEGFLFEYDRLL 197 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~ 197 (308)
.+..+..+...+++|++.|.
T Consensus 111 q~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 111 ENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555554333
No 28
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=80.93 E-value=17 Score=27.99 Aligned_cols=9 Identities=44% Similarity=0.652 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 021727 196 LLEENQNLR 204 (308)
Q Consensus 196 L~eE~~kLq 204 (308)
|..|+++|+
T Consensus 53 L~~en~qLk 61 (81)
T 2jee_A 53 LERENNHLK 61 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 29
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=80.73 E-value=9.4 Score=28.72 Aligned_cols=47 Identities=19% Similarity=0.152 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 160 DLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 160 kLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
.|+.+.+.....+..++.+++...+.......|++.|....+.+...
T Consensus 10 ~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~e 56 (81)
T 1ic2_A 10 MLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDE 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444444444444333333333
No 30
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=79.33 E-value=9.2 Score=46.33 Aligned_cols=43 Identities=16% Similarity=0.084 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727 162 ESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (308)
Q Consensus 162 k~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq 204 (308)
+.++++.++++..+++.+.+.+.+...++..-..|.+++++..
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~ 2055 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLI 2055 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555566666666666666666666665543
No 31
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=78.42 E-value=5.5 Score=38.21 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Q 021727 107 DRLHHYIRELRIRRKTMEAIKNQSRGF 133 (308)
Q Consensus 107 ~Rl~sLI~eLa~le~~~ealkKQa~~a 133 (308)
++...|-.+|..++++...+.+|+.+.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATA 423 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhc
Confidence 555566677777777777777776644
No 32
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=77.65 E-value=26 Score=29.47 Aligned_cols=29 Identities=3% Similarity=0.052 Sum_probs=23.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 180 VALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 180 eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
-.-+.|...|.+.|-.++.+|+.+|..-.
T Consensus 122 Rir~~q~~~L~~kf~~~m~~yq~~q~~y~ 150 (180)
T 1s94_A 122 RIRKTQYSTISRKFVEVMSDYNTTQIDYR 150 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999998876533
No 33
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.35 E-value=24 Score=28.62 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=11.3
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHH
Q 021727 177 TNAVALRKQSEGFLFEYDRLLEE 199 (308)
Q Consensus 177 ~d~eaLKKQae~L~kEYDRL~eE 199 (308)
.++..+|...+....||..|++=
T Consensus 89 ~eL~~~r~e~~~ql~EYq~Llnv 111 (129)
T 3tnu_B 89 EALQKAKQDMARLLREYQELMNT 111 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555543
No 34
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=77.08 E-value=28 Score=29.67 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 155 ~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
..+|+.|...++..+....-|+..+.-|.+..+.+..+.+.-.++|..++..
T Consensus 76 EeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~e 127 (155)
T 2efr_A 76 EEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEE 127 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556655665555555555555566666555555544444444444433
No 35
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=76.19 E-value=23 Score=30.68 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHH----HHHHHHhHhhcc
Q 021727 151 MTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEE----NQNLRNQLQSLD 211 (308)
Q Consensus 151 ~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE----~~kLq~~l~~~d 211 (308)
+..+...+.-|..+++.....+.+++.|...|......+.+|+..+.-| ...+|+.++.+.
T Consensus 92 ~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE~ 156 (168)
T 3o0z_A 92 IGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEV 156 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3345566777888888777778888888888888888888888877744 445666555443
No 36
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=76.14 E-value=5.4 Score=31.64 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 021727 158 LKDLESELETKSKEANAAETNAVALRKQSE 187 (308)
Q Consensus 158 vekLk~eLk~k~kel~kae~d~eaLKKQae 187 (308)
+.-|+.+++--..+-.+..+|.+-+....+
T Consensus 42 i~vLk~Qv~IY~~DF~aERadREkl~~eKe 71 (94)
T 3jsv_C 42 VPVLKAQADIYKADFQAERHAREKLVEKKE 71 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344555555555444444444444433333
No 37
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=75.66 E-value=7.9 Score=29.27 Aligned_cols=35 Identities=20% Similarity=0.112 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHH
Q 021727 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFE 192 (308)
Q Consensus 158 vekLk~eLk~k~kel~kae~d~eaLKKQae~L~kE 192 (308)
+.+|+..|+.+..+|..-+.-++.+.++......+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~e 55 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDEL 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666655544333344444444333333
No 38
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=75.52 E-value=3.9 Score=31.92 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021727 154 LKLKLKDLESELETKSKEA 172 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel 172 (308)
+..+++.|+.+....++++
T Consensus 6 L~~~i~~L~~q~~~L~~ei 24 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSL 24 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445555444444443
No 39
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=74.93 E-value=20 Score=29.36 Aligned_cols=56 Identities=16% Similarity=0.266 Sum_probs=37.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHhHh
Q 021727 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRL-------LEENQNLRNQLQ 208 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL-------~eE~~kLq~~l~ 208 (308)
.|+.|..+++.|+.+++...-| +..-+..|+.|+..|+.|.+.- ..|++.|+.+++
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E---~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTE---SQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777776554 3345777888888887777653 345666666555
No 40
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=74.88 E-value=34 Score=28.14 Aligned_cols=83 Identities=18% Similarity=0.216 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 021727 105 MIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRK 184 (308)
Q Consensus 105 VI~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKK 184 (308)
|=+..+.+=.+|-..++.+.....|+.+-...-.... ..+.++...-.+++++|+.|++....+|..+..+++-|++
T Consensus 23 CrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~---~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 23 ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALM---ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345556666666676666655555543222100000 0111111111234777777777777777777778888888
Q ss_pred HHhhHH
Q 021727 185 QSEGFL 190 (308)
Q Consensus 185 Qae~L~ 190 (308)
+.+-+.
T Consensus 100 ~~~~~~ 105 (121)
T 3mq7_A 100 ENQVLS 105 (121)
T ss_dssp HHHHHH
T ss_pred hchhhh
Confidence 766553
No 41
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=74.49 E-value=9.9 Score=30.93 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 021727 190 LFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 190 ~kEYDRL~eE~~kLq~~ 206 (308)
+.|-++|.++...||.+
T Consensus 89 ~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 89 VEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 42
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=74.25 E-value=32 Score=27.63 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=23.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHH
Q 021727 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRL 196 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL 196 (308)
+++.|+.++++++..+....++.+...++++.+|.+...|+.+++.|
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555544444445555555554444444433
No 43
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=74.19 E-value=28 Score=28.00 Aligned_cols=59 Identities=10% Similarity=0.053 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhcc
Q 021727 153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLD 211 (308)
Q Consensus 153 ~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d 211 (308)
.+.=+|+-||..+++.++.+.....+..--.+..+.+....+.|..+...++.++..-|
T Consensus 27 al~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD 85 (103)
T 4h22_A 27 NFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQRE 85 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557888888888888877776777777777777777777777777777777766444
No 44
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=73.77 E-value=16 Score=36.59 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=21.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 021727 148 EDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQN 202 (308)
Q Consensus 148 ~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~k 202 (308)
..||+..++..++.|..-++ ++.+-++++++-+++ ..+|+.=+..|+.
T Consensus 47 ~aeNeaikkrNa~aka~Ye~---~l~kY~~dlakY~~~----~AeY~~kl~aYe~ 94 (497)
T 3iox_A 47 TAENTAIKKRNADAKADYEA---KLAKYQADLAKYQKD----LADYPVKLKAYED 94 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 33444444444433333322 233445556655555 4555554455543
No 45
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=73.06 E-value=14 Score=31.25 Aligned_cols=65 Identities=20% Similarity=0.214 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccccccccC
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHSD 218 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~s~~~ 218 (308)
+..++++-+.||+-.-+=|...+-.++-|+|.----++|.-+|-.|...+|..++..|.-+-++|
T Consensus 23 ~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~ 87 (167)
T 4gkw_A 23 LQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNS 87 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Confidence 33344444444443333333444456666666666666777776666666666665555544433
No 46
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=72.28 E-value=28 Score=28.45 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 021727 153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEG 188 (308)
Q Consensus 153 ~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~ 188 (308)
.++..+..|+.+|.........|..|.+-|+.+.+.
T Consensus 44 ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 44 QLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666555444444455555554443
No 47
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=71.41 E-value=44 Score=33.93 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=11.2
Q ss_pred HHHHHHHHHhHhhcccc
Q 021727 197 LEENQNLRNQLQSLDWR 213 (308)
Q Consensus 197 ~eE~~kLq~~l~~~d~~ 213 (308)
++.|+.+|+||+..+..
T Consensus 175 ~~sY~~~QKQLeQv~a~ 191 (562)
T 3ghg_A 175 LKDYEDQQKQLEQVIAK 191 (562)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhhc
Confidence 35678888888754443
No 48
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=71.09 E-value=25 Score=28.64 Aligned_cols=24 Identities=33% Similarity=0.304 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHH
Q 021727 176 ETNAVALRKQSEGFLFEYDRLLEE 199 (308)
Q Consensus 176 e~d~eaLKKQae~L~kEYDRL~eE 199 (308)
+.++..+|...+....||..|++=
T Consensus 90 E~eL~~~r~em~~ql~EYq~Ll~v 113 (131)
T 3tnu_A 90 EEQLAQLRCEMEQQNQEYKILLDV 113 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555566555543
No 49
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=69.00 E-value=36 Score=25.99 Aligned_cols=50 Identities=22% Similarity=0.181 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 159 KDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 159 ekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
..|+..+...+..+..++.+-+.++...+.+..-.|.=..|...++..++
T Consensus 23 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 23 AELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLA 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33444444444444445555677778888888888887888888877765
No 50
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.23 E-value=22 Score=34.05 Aligned_cols=41 Identities=17% Similarity=0.059 Sum_probs=26.9
Q ss_pred HHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 168 KSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 168 k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
.+.+..+.+.+.+..+++.+++.+|-+|+.++.+++..+++
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALA 466 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence 33344456667777777777777777777777766655554
No 51
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=68.20 E-value=16 Score=35.30 Aligned_cols=51 Identities=22% Similarity=0.141 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq 204 (308)
+++++++|+.+.++++++++..+.+++.++.|...-+.+=.+|-.+.+.++
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455666666666666666655555666666554444444444433333443
No 52
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=67.04 E-value=46 Score=29.31 Aligned_cols=21 Identities=10% Similarity=-0.070 Sum_probs=9.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHH
Q 021727 179 AVALRKQSEGFLFEYDRLLEE 199 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~eE 199 (308)
+..|+++...+..+-+.|...
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ 110 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKY 110 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 53
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=66.03 E-value=63 Score=27.62 Aligned_cols=34 Identities=9% Similarity=0.232 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHhccccccc
Q 021727 102 LAFMIDRLHHYIRE--LRIRRKTMEAIKNQSRGFED 135 (308)
Q Consensus 102 L~LVI~Rl~sLI~e--La~le~~~ealkKQa~~a~~ 135 (308)
|.+++-+++.+|.+ +-.++..++....++++.+.
T Consensus 6 LTlLlG~l~~l~G~~Sl~qL~nrla~~~am~~sqqq 41 (158)
T 3tul_A 6 LTLLLGKLMTLLGDVSLSQLESRLAVWQAMIESQKE 41 (158)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777754 44555666666554444433
No 54
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=66.02 E-value=40 Score=25.34 Aligned_cols=52 Identities=25% Similarity=0.294 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhh
Q 021727 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (308)
Q Consensus 158 vekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~ 209 (308)
...|+..+...+..+..++.+-+.++...+.+..-.|.=..|...++..+++
T Consensus 16 N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 16 NKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3334444444444444555566788888888888888888888888877663
No 55
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=64.63 E-value=55 Score=32.93 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=17.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 021727 94 TLMGASLFLAFMIDRLHHYIRELR 117 (308)
Q Consensus 94 YISGFsLFL~LVI~Rl~sLI~eLa 117 (308)
.+.||..++. .|+.++.+|+.-.
T Consensus 398 ilegl~~a~~-~id~vI~iIr~s~ 420 (514)
T 2inr_A 398 IVEGLIKALS-ILDKVIELIRSSK 420 (514)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHCC
T ss_pred HHHHHHHHHH-HHHHHHHHHHcCC
Confidence 7899888775 7799988876433
No 56
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=64.14 E-value=36 Score=24.13 Aligned_cols=40 Identities=28% Similarity=0.388 Sum_probs=24.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH
Q 021727 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L 189 (308)
+++.|+.|...|+.||+.-...|.+.|.+--.||.=...+
T Consensus 11 QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 11 QVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 3445566666677777766666666666666666544433
No 57
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=64.07 E-value=15 Score=27.33 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHH
Q 021727 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFE 192 (308)
Q Consensus 157 evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kE 192 (308)
.+++|+.++...+........+.+.|+.|.+.|..|
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555544443333344455555555555444
No 58
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=63.91 E-value=19 Score=35.03 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727 153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (308)
Q Consensus 153 ~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq 204 (308)
.|++|+++|++++++.+++++..+.+++.++.|.-..+.+--+|-.+.+.++
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455555566555555555555556666666665554444444444444443
No 59
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=63.52 E-value=3.8 Score=26.98 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq~~l 207 (308)
.++++|+...+++.+-|.+.++-..+++++
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888888888888777777766
No 60
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=62.93 E-value=21 Score=24.23 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhc
Q 021727 117 RIRRKTMEAIKNQ 129 (308)
Q Consensus 117 a~le~~~ealkKQ 129 (308)
+.++.++.+++|+
T Consensus 3 aalkselqalkke 15 (48)
T 1g6u_A 3 AALKSELQALKKE 15 (48)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 4455566666653
No 61
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=62.75 E-value=90 Score=28.32 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 021727 158 LKDLESELETKSKEANAAETNAVALRKQ 185 (308)
Q Consensus 158 vekLk~eLk~k~kel~kae~d~eaLKKQ 185 (308)
+..|+.||...+.+..-+|+.+..+|-|
T Consensus 133 l~~LeqELvraEae~lvaEAqL~n~kR~ 160 (234)
T 3plt_A 133 IPVLEQELVRAEAESLVAEAQLSNITRE 160 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhHHH
Confidence 4455555555544444444444444443
No 62
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=61.16 E-value=51 Score=24.93 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=33.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727 150 QMTTLKLKLKDLESELETKSKEANAAE------TNAVALRKQSEGFLFEYDRLLEENQNLR 204 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~k~kel~kae------~d~eaLKKQae~L~kEYDRL~eE~~kLq 204 (308)
+.+.+..+|++|+.++...+.++.... ..+..+-.+.+.+..+.+.+.+.-..|.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566667777777776666664321 2345666667777777777776666554
No 63
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=61.15 E-value=14 Score=26.02 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=11.2
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHH
Q 021727 144 IKALEDQMTTLKLKLKDLESELETK 168 (308)
Q Consensus 144 ~~~~~~e~~~l~~evekLk~eLk~k 168 (308)
.+++..|++.|+.+++.|+.++++.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 64
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=61.05 E-value=77 Score=26.95 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=5.5
Q ss_pred hHHHhHHHHHHHH
Q 021727 147 LEDQMTTLKLKLK 159 (308)
Q Consensus 147 ~~~e~~~l~~eve 159 (308)
..+++..|..+++
T Consensus 75 yEeqIk~L~~kLK 87 (155)
T 2efr_A 75 YEEEIKVLSDKLK 87 (155)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 65
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=60.85 E-value=61 Score=25.77 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHhhHHHHHHHHH
Q 021727 157 KLKDLESELETKSKEANAAE-------TNAVALRKQSEGFLFEYDRLL 197 (308)
Q Consensus 157 evekLk~eLk~k~kel~kae-------~d~eaLKKQae~L~kEYDRL~ 197 (308)
.++.|+.+|+.+..++...+ .+-..+.++..++..|.|.|.
T Consensus 55 ~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~ 102 (107)
T 2no2_A 55 VLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666555443332 233334444455555554443
No 66
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=60.80 E-value=11 Score=34.72 Aligned_cols=28 Identities=18% Similarity=0.028 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq~ 205 (308)
..+.|+.+.+.+.+|..+|.+|.++|+.
T Consensus 69 rNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 69 RNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455666666666777777777777764
No 67
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=60.48 E-value=41 Score=30.98 Aligned_cols=74 Identities=8% Similarity=0.040 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HhhHHHHHHHHHHHHHHHHHhHhhccccccccCccceeeccccccccc
Q 021727 155 KLKLKDLESELETKSKEANAAETNAVALRKQ-SEGFLFEYDRLLEENQNLRNQLQSLDWRLSHSDFRTVYWNAEKTASST 233 (308)
Q Consensus 155 ~~evekLk~eLk~k~kel~kae~d~eaLKKQ-ae~L~kEYDRL~eE~~kLq~~l~~~d~~~s~~~~k~~~~~~~~~~~~~ 233 (308)
.+.+++|+.++++.+.++...++++..+.++ .+.+..-|+.+..+.+...-.... ..+++.|+ -..
T Consensus 225 ~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~------~~g 291 (357)
T 3rrk_A 225 GKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYKAVADM-------AAGKYGAA------LMG 291 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTCCSEE------EEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cccCcEEE------EEE
Confidence 3446667777777777776777778888887 777888888887776654332211 13556666 457
Q ss_pred cchhhhhh
Q 021727 234 YCAAKVLD 241 (308)
Q Consensus 234 ~~~~~~~~ 241 (308)
||..+-++
T Consensus 292 Wvp~~~~~ 299 (357)
T 3rrk_A 292 WVPQKAKG 299 (357)
T ss_dssp EECTTTHH
T ss_pred EeeHHHHH
Confidence 78776543
No 68
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=60.20 E-value=30 Score=33.53 Aligned_cols=17 Identities=18% Similarity=0.378 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021727 156 LKLKDLESELETKSKEA 172 (308)
Q Consensus 156 ~evekLk~eLk~k~kel 172 (308)
.++++|+.+-++..+++
T Consensus 42 ~~~~~l~~~~n~~sk~i 58 (421)
T 1ses_A 42 KRLQEVQTERNQVAKRV 58 (421)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 69
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=60.10 E-value=99 Score=30.76 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=17.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Q 021727 94 TLMGASLFLAFMIDRLHHYIREL 116 (308)
Q Consensus 94 YISGFsLFL~LVI~Rl~sLI~eL 116 (308)
.+-|+...+ ..|+.++.+|+.-
T Consensus 360 ilegl~~a~-~~iD~vI~iIr~s 381 (470)
T 3ilw_A 360 ILRGLVKAL-DALDEVIALIRAS 381 (470)
T ss_dssp HHHHHHHHH-HTHHHHHHHHHHC
T ss_pred HHHHHHHHH-HHHHHHHHHHHhC
Confidence 678877775 5789999888765
No 70
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=60.01 E-value=55 Score=24.94 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=11.9
Q ss_pred HHhhhHHHHHHHHHhhHH
Q 021727 173 NAAETNAVALRKQSEGFL 190 (308)
Q Consensus 173 ~kae~d~eaLKKQae~L~ 190 (308)
..+++|+.+|||-.....
T Consensus 45 ~~~E~d~~~LrkdvD~a~ 62 (86)
T 3swk_A 45 EEAENTLQSFRQDVDNAS 62 (86)
T ss_dssp HHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHH
Confidence 356777777777766543
No 71
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=59.96 E-value=16 Score=28.97 Aligned_cols=50 Identities=14% Similarity=0.302 Sum_probs=39.2
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 154 LKLKLK-DLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 154 l~~eve-kLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
|+..++ +|........+++. ++..| .|-+-|.++|-.++.+++.+|.+-.
T Consensus 38 LR~~l~~~l~~~~~~L~k~~~----~l~~l-~qkeRL~~dF~~l~~~fQ~~qr~y~ 88 (97)
T 1hs7_A 38 LRYKIETELIPNCTSVRDKIE----SNILI-HQNGKLSADFKNLKTKYQSLQQSYN 88 (97)
T ss_dssp HHHHHHHTHHHHHHHHHHHHH----HSTHH-HHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----Hhccc-chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 677777 77777777777664 55566 4889999999999999999887755
No 72
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=59.87 E-value=19 Score=22.76 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 021727 152 TTLKLKLKDLESELET 167 (308)
Q Consensus 152 ~~l~~evekLk~eLk~ 167 (308)
..+++|+..||+|+..
T Consensus 5 aalkqeiaalkkeiaa 20 (33)
T 4dzn_A 5 AALKQEIAALKKEIAA 20 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344455555544443
No 73
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=59.79 E-value=54 Score=32.66 Aligned_cols=11 Identities=9% Similarity=0.317 Sum_probs=6.6
Q ss_pred hhhhhhhhhhh
Q 021727 238 KVLDFELLTKL 248 (308)
Q Consensus 238 ~~~~~~~~~~~ 248 (308)
..+||+..++.
T Consensus 196 gl~d~~~~~k~ 206 (501)
T 1wle_A 196 DIIRQKRLSHV 206 (501)
T ss_dssp TCEECTTCTTT
T ss_pred Cceeccccccc
Confidence 34677766554
No 74
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=58.74 E-value=66 Score=25.99 Aligned_cols=18 Identities=6% Similarity=-0.036 Sum_probs=8.2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 021727 187 EGFLFEYDRLLEENQNLR 204 (308)
Q Consensus 187 e~L~kEYDRL~eE~~kLq 204 (308)
..|++|++.|.+++..++
T Consensus 38 ~~Lq~El~~lr~~~~~l~ 55 (111)
T 2v66_B 38 SVLEDDLSQTRAIKEQLH 55 (111)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 75
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=58.37 E-value=57 Score=24.57 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=22.2
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 171 el~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~ 205 (308)
.+..-+.++..+|...+....||..|++=.-.|-.
T Consensus 34 ~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~ 68 (84)
T 1gk4_A 34 TIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDI 68 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33334445667777777788888888765544443
No 76
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=57.86 E-value=61 Score=31.60 Aligned_cols=48 Identities=17% Similarity=0.036 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (308)
Q Consensus 157 evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq 204 (308)
+.+++..++...+..+...+..+..|+.+.+.++...+.|......|.
T Consensus 85 ~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 85 KSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344444445544445555556677777777776666666655444444
No 77
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=57.84 E-value=63 Score=24.95 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 021727 176 ETNAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (308)
Q Consensus 176 e~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l 207 (308)
+..+..|++|.+.+..|-.++.-|..+++..+
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~ 86 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDI 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555565555555555555555554443
No 78
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.52 E-value=75 Score=25.68 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLR 204 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq 204 (308)
.+..|..+...+..+-.+.+.||+.|-
T Consensus 85 ~i~~lE~eL~~~r~em~~ql~EYq~Ll 111 (131)
T 3tnu_A 85 MIGSVEEQLAQLRCEMEQQNQEYKILL 111 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555543
No 79
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=57.46 E-value=42 Score=25.30 Aligned_cols=14 Identities=36% Similarity=0.586 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 021727 157 KLKDLESELETKSK 170 (308)
Q Consensus 157 evekLk~eLk~k~k 170 (308)
.|++|+.+|.+++.
T Consensus 41 ~I~eLEk~L~ekd~ 54 (72)
T 3nmd_A 41 LIDELELELDQKDE 54 (72)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444554444443
No 80
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=57.42 E-value=38 Score=23.76 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=11.9
Q ss_pred HHHHHHhhhHHHHHHHHHhhH
Q 021727 169 SKEANAAETNAVALRKQSEGF 189 (308)
Q Consensus 169 ~kel~kae~d~eaLKKQae~L 189 (308)
...|+.+...++.|+.|.+.+
T Consensus 29 ~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 29 METLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444555567777776654
No 81
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=56.65 E-value=42 Score=29.65 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHH------HHhHhhccccccccCccceeec
Q 021727 152 TTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNL------RNQLQSLDWRLSHSDFRTVYWN 225 (308)
Q Consensus 152 ~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kL------q~~l~~~d~~~s~~~~k~~~~~ 225 (308)
+.|..|+..|..+++.++.|++..+..++.++.|+..++ |++.++.+.. =..+..--.+-...|....++.
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~---~~~~~~~e~i~i~~DL~e~LTGl~V~~~~ed~~~~~FD 99 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELK---TQTSQQAENSEVIKDLYEYLCNVRVHKSYEDDSGLWFD 99 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHSEECCCCCCCSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh---hHHHHHHHhhhHHHHHHHHccCcEEEEEEEcCCCeEEE
Confidence 345555666666666666655555555555555554322 2333333332 2334333344444555555554
Q ss_pred ccccc
Q 021727 226 AEKTA 230 (308)
Q Consensus 226 ~~~~~ 230 (308)
.-.|.
T Consensus 100 c~Qtg 104 (190)
T 4emc_A 100 ISQGT 104 (190)
T ss_dssp EEESC
T ss_pred EEecC
Confidence 44443
No 82
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=56.55 E-value=20 Score=32.13 Aligned_cols=36 Identities=14% Similarity=0.244 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 021727 151 MTTLKLKLKDLESELETKSKEANAAETNAVALRKQS 186 (308)
Q Consensus 151 ~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQa 186 (308)
++.+..++++|+.++++...++.++.+|.+.+||..
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~ 96 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRT 96 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555543
No 83
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=56.20 E-value=40 Score=26.66 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHH
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRL 196 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL 196 (308)
++.|+++|+.++...+. +......||..+..|..|-++-
T Consensus 52 L~~EI~~L~~eI~~LE~----iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 52 LEEEIARLSKEIDQLEK----MQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHH
Confidence 34445555555553322 2333445555555555544443
No 84
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=56.15 E-value=51 Score=26.03 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH
Q 021727 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEY 193 (308)
Q Consensus 157 evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEY 193 (308)
++++|+.++...+..+. .+.-|+.|++=....|
T Consensus 24 ~id~lke~~~q~~~~~E----~i~vLk~Qv~IY~~DF 56 (94)
T 3jsv_C 24 LIDKLKEEAEQHKIVME----TVPVLKAQADIYKADF 56 (94)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 34444444444443322 2455666655444444
No 85
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=56.12 E-value=89 Score=26.11 Aligned_cols=61 Identities=15% Similarity=0.224 Sum_probs=33.4
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 146 ALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 146 ~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
...++++.+..++.++=..++.+=+.+.....+.-.-|.|...|.+.|-.++.+++++|..
T Consensus 46 ~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~~~r~~k~~~~~L~~~f~~~~~~fq~~Q~~ 106 (196)
T 1fio_A 46 HLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAENSRQRFLKLIQDYRIVDSN 106 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444444444443322222345567777777777777777766544
No 86
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=56.09 E-value=36 Score=30.77 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHH
Q 021727 152 TTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEEN 200 (308)
Q Consensus 152 ~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~ 200 (308)
..+++++..|+.+|+....|..+..+.++..+.|+..+..-||+++=|.
T Consensus 174 ~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (228)
T 3q0x_A 174 SEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLEV 222 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 3455566666666776666666667777777777777777888877553
No 87
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=55.72 E-value=28 Score=32.93 Aligned_cols=37 Identities=11% Similarity=-0.015 Sum_probs=20.1
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 021727 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (308)
Q Consensus 171 el~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l 207 (308)
.+...+..+..|+.+.+.++...++|......+++..
T Consensus 20 ~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 20 IGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444556666666666666666655555554443
No 88
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=55.57 E-value=84 Score=25.69 Aligned_cols=43 Identities=16% Similarity=0.256 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHH
Q 021727 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEEN 200 (308)
Q Consensus 157 evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~ 200 (308)
+..+++.++..+..++... .+...-|+|.+++-+.|-.+..+.
T Consensus 45 ~~~~l~~~i~er~~~i~~~-~~~~~yk~~y~~l~k~Y~~~~keL 87 (119)
T 3etw_A 45 QNEQVYNELSQRAQRLQAE-ANTRFYKSQYQELASKYEDALKKL 87 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666555442 233445555444444444444433
No 89
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=55.28 E-value=39 Score=24.65 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHH
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRL 196 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL 196 (308)
.++++|+.....-..++..++.++..|+.+...|+.|-+.+
T Consensus 35 ~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 35 SKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666777777777777777777777777777777776654
No 90
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=54.90 E-value=54 Score=32.10 Aligned_cols=11 Identities=27% Similarity=0.253 Sum_probs=6.5
Q ss_pred hhhhhhhhhhh
Q 021727 238 KVLDFELLTKL 248 (308)
Q Consensus 238 ~~~~~~~~~~~ 248 (308)
..+||+..++.
T Consensus 170 ~l~d~~~~~k~ 180 (455)
T 2dq0_A 170 GGADFARAAKV 180 (455)
T ss_dssp TCEESHHHHHH
T ss_pred CcEEecccccc
Confidence 34677766554
No 91
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=54.72 E-value=14 Score=32.59 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=25.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+..|+.+.+.+++|+|||..|.++.+++++
T Consensus 154 ~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 154 IAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567777888889999999999999888775
No 92
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=54.20 E-value=53 Score=32.69 Aligned_cols=11 Identities=18% Similarity=-0.025 Sum_probs=7.4
Q ss_pred hhhhhhhhhhc
Q 021727 239 VLDFELLTKLS 249 (308)
Q Consensus 239 ~~~~~~~~~~~ 249 (308)
.+||+..++.+
T Consensus 163 l~df~~~~k~s 173 (485)
T 3qne_A 163 GYDPERGVRIV 173 (485)
T ss_dssp CEEHHHHHHHH
T ss_pred Ccccccccccc
Confidence 46888776654
No 93
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=54.01 E-value=42 Score=24.10 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhHHHHHHHH
Q 021727 178 NAVALRKQSEGFLFEYDRL 196 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL 196 (308)
+...|+.+++.|..|...|
T Consensus 38 ~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 38 KNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666665555444
No 94
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=54.01 E-value=43 Score=25.97 Aligned_cols=60 Identities=17% Similarity=0.261 Sum_probs=29.6
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 147 LEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 147 ~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+..+++.|.++..+|+.++.....++.. .+-+..-+.-=.+..+|+.+.+=-+.|-..++
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~~a~L~~--~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA 65 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDALAKLKN--RDAKQTVQKHIDLLHTYNEIRDIALGMIGKVA 65 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3445566777777777777766654421 11122112222233455555554444444444
No 95
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=53.97 E-value=73 Score=24.48 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQN 202 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~k 202 (308)
+++.|.+|.+.+.++++.+..++..
T Consensus 85 ~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 85 RLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666555544443
No 96
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=53.91 E-value=25 Score=23.19 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021727 156 LKLKDLESELETKSKEANA 174 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~k 174 (308)
.|.++|-++++.++.++.+
T Consensus 7 ~ENekLhk~ie~KdeeIa~ 25 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIAR 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777777777765433
No 97
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=53.45 E-value=81 Score=26.07 Aligned_cols=8 Identities=13% Similarity=0.277 Sum_probs=3.0
Q ss_pred HhhHHHHH
Q 021727 186 SEGFLFEY 193 (308)
Q Consensus 186 ae~L~kEY 193 (308)
.+++..+|
T Consensus 73 lke~~~~~ 80 (155)
T 2oto_A 73 LKELQQDY 80 (155)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 98
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=53.38 E-value=1.1e+02 Score=27.07 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=13.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 021727 148 EDQMTTLKLKLKDLESELETKSKEANAAETNA 179 (308)
Q Consensus 148 ~~e~~~l~~evekLk~eLk~k~kel~kae~d~ 179 (308)
.-||..|.++++....|++...+++...+++.
T Consensus 26 ~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 26 VNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444444444444444443333
No 99
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=53.31 E-value=30 Score=33.34 Aligned_cols=13 Identities=8% Similarity=0.251 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 021727 159 KDLESELETKSKE 171 (308)
Q Consensus 159 ekLk~eLk~k~ke 171 (308)
+.|+.+++..+++
T Consensus 6 ~~~~~~~~~l~~~ 18 (403)
T 4etp_A 6 AALKEKIAALKEK 18 (403)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 100
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=53.26 E-value=37 Score=29.39 Aligned_cols=56 Identities=23% Similarity=0.314 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHhhHHHHH-HHHHHHHHHHHHhHhh
Q 021727 154 LKLKLKDLESELETKSKEANAA-ETNAVALRKQSEGFLFEY-DRLLEENQNLRNQLQS 209 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~ka-e~d~eaLKKQae~L~kEY-DRL~eE~~kLq~~l~~ 209 (308)
+.+++++|+..|+-...+++.. ..+++.++.|..-...+| .++.+..+.|+.++..
T Consensus 104 l~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~kl~~~~eeLr~~l~P 161 (191)
T 1nfn_A 104 LGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAV 161 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHH
Confidence 4567778888888777777543 668889999999999988 4666666788888873
No 101
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=53.23 E-value=83 Score=24.91 Aligned_cols=18 Identities=28% Similarity=0.146 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhHh
Q 021727 191 FEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 191 kEYDRL~eE~~kLq~~l~ 208 (308)
++...+-..+.+|+.|+.
T Consensus 76 ~e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 76 KEKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444455555666776665
No 102
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=52.56 E-value=80 Score=28.40 Aligned_cols=26 Identities=8% Similarity=0.110 Sum_probs=17.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727 180 VALRKQSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 180 eaLKKQae~L~kEYDRL~eE~~kLq~ 205 (308)
-.-+.|..+|.+.|-.++.+|++.|.
T Consensus 114 Rirk~q~~~L~~~f~~~m~~yq~~Q~ 139 (267)
T 1dn1_B 114 RIRKTQHSTLSRKFVEVMSEYNATQS 139 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777766543
No 103
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=52.49 E-value=32 Score=34.27 Aligned_cols=23 Identities=4% Similarity=-0.008 Sum_probs=9.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Q 021727 180 VALRKQSEGFLFEYDRLLEENQN 202 (308)
Q Consensus 180 eaLKKQae~L~kEYDRL~eE~~k 202 (308)
..|++|.+.+..+...+.++.+.
T Consensus 81 ~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 81 EKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 104
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=52.07 E-value=83 Score=28.57 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=24.8
Q ss_pred HHHHHHHHH------HHHHHHHHHHHHhhhHHHHHHHHHhhHHH
Q 021727 154 LKLKLKDLE------SELETKSKEANAAETNAVALRKQSEGFLF 191 (308)
Q Consensus 154 l~~evekLk------~eLk~k~kel~kae~d~eaLKKQae~L~k 191 (308)
+..++.+|+ ..|...+.||.++|.+...-..|..|+.+
T Consensus 116 l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR 159 (234)
T 3plt_A 116 ITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQLSNITR 159 (234)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHHHHhHH
Confidence 445566665 45666667777777777666667766655
No 105
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=51.88 E-value=78 Score=24.34 Aligned_cols=8 Identities=25% Similarity=0.235 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 021727 196 LLEENQNL 203 (308)
Q Consensus 196 L~eE~~kL 203 (308)
|..|.+++
T Consensus 57 L~~e~~~l 64 (81)
T 1wt6_A 57 LEAHVRQL 64 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 106
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=51.01 E-value=95 Score=24.94 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLR 204 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq 204 (308)
-+..|..+...+..+-.+.+.||+.|-
T Consensus 83 ~i~~lE~eL~~~r~e~~~ql~EYq~Ll 109 (129)
T 3tnu_B 83 KLAELEEALQKAKQDMARLLREYQELM 109 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555666666544
No 107
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=50.86 E-value=94 Score=24.83 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=21.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 182 LRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 182 LKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
.-.++..|+.|-+||..||+.|..+-+
T Consensus 63 ~~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 63 LDARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999999999876644
No 108
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=50.41 E-value=76 Score=23.70 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLR 204 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq 204 (308)
++..+|...+....||..|++=.-.|.
T Consensus 20 eL~~~r~e~~~ql~EYq~LlniKl~Le 46 (74)
T 2xv5_A 20 EMAEMRARMQQQLDEYQELLDIKLALD 46 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666667778877776544443
No 109
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=50.38 E-value=1.3e+02 Score=29.77 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 021727 189 FLFEYDRLLEENQNLRNQL 207 (308)
Q Consensus 189 L~kEYDRL~eE~~kLq~~l 207 (308)
|+...+.+..+.++|...+
T Consensus 173 L~~~~~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 173 LRAVIDSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 110
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=50.27 E-value=52 Score=23.45 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=6.8
Q ss_pred HHHHHHHhhHHHHHHH
Q 021727 180 VALRKQSEGFLFEYDR 195 (308)
Q Consensus 180 eaLKKQae~L~kEYDR 195 (308)
..|+++++.|..|+..
T Consensus 40 ~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 40 SALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 111
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=49.58 E-value=61 Score=32.31 Aligned_cols=17 Identities=29% Similarity=0.188 Sum_probs=6.2
Q ss_pred HHHHHhhHHHHHHHHHH
Q 021727 182 LRKQSEGFLFEYDRLLE 198 (308)
Q Consensus 182 LKKQae~L~kEYDRL~e 198 (308)
+++|.+.+..+-..+.+
T Consensus 128 l~~~i~~l~~~~~~~~~ 144 (501)
T 1wle_A 128 IRKQLTLLYPKEAQLEE 144 (501)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 112
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=48.95 E-value=39 Score=26.14 Aligned_cols=21 Identities=38% Similarity=0.344 Sum_probs=8.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHH
Q 021727 182 LRKQSEGFLFEYDRLLEENQN 202 (308)
Q Consensus 182 LKKQae~L~kEYDRL~eE~~k 202 (308)
|.++.+.+..|-.+|.+|+..
T Consensus 43 Lh~~ie~~~eEi~~Lk~en~~ 63 (83)
T 1wlq_A 43 LHKEIEQKDSEIARLRKENKD 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444333
No 113
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=48.21 E-value=1.1e+02 Score=24.79 Aligned_cols=15 Identities=13% Similarity=0.339 Sum_probs=6.4
Q ss_pred HHHHHHHHhhHHHHH
Q 021727 179 AVALRKQSEGFLFEY 193 (308)
Q Consensus 179 ~eaLKKQae~L~kEY 193 (308)
+.-|+.|++=....|
T Consensus 64 I~vLkaQv~IY~~DF 78 (110)
T 2v4h_A 64 VPVLKAQADIYKADF 78 (110)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 114
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=47.76 E-value=36 Score=33.34 Aligned_cols=20 Identities=15% Similarity=0.106 Sum_probs=7.5
Q ss_pred HHHHHhhHHHHHHHHHHHHH
Q 021727 182 LRKQSEGFLFEYDRLLEENQ 201 (308)
Q Consensus 182 LKKQae~L~kEYDRL~eE~~ 201 (308)
+++|.+.+..+...+.++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~ 100 (455)
T 2dq0_A 81 IVKRIGELENEVEELKKKID 100 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 115
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=47.66 E-value=43 Score=28.26 Aligned_cols=39 Identities=31% Similarity=0.364 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhH--------HHHHHHHHHHHH
Q 021727 163 SELETKSKEANAAETNAVALRKQSEGF--------LFEYDRLLEENQ 201 (308)
Q Consensus 163 ~eLk~k~kel~kae~d~eaLKKQae~L--------~kEYDRL~eE~~ 201 (308)
.+++...+++..+.++++.|+.-.... ++|-+..++|-+
T Consensus 54 ~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceEQq 100 (141)
T 3okq_A 54 KKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEEQQ 100 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333322 445555555544
No 116
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=47.60 E-value=89 Score=23.63 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=21.6
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (308)
Q Consensus 171 el~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq 204 (308)
.+..-+.++..+|...+....||..|++=.-.|-
T Consensus 36 ~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le 69 (86)
T 1x8y_A 36 LLAEKEREMAEMRARMQQQLDEYQELLDIKLALD 69 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3333344566677777777888888876554443
No 117
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=47.24 E-value=65 Score=22.93 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=14.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 179 AVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
++.|.++-+.|..+.+.|.+|.+.|...
T Consensus 32 v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 32 TDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555443
No 118
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=46.91 E-value=1.2e+02 Score=24.99 Aligned_cols=12 Identities=17% Similarity=0.133 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 021727 115 ELRIRRKTMEAI 126 (308)
Q Consensus 115 eLa~le~~~eal 126 (308)
+...++...+.+
T Consensus 30 eN~~Lk~e~e~l 41 (155)
T 2oto_A 30 ENKDLKARLENA 41 (155)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344443333
No 119
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=46.60 E-value=1.3e+02 Score=31.45 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=16.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Q 021727 94 TLMGASLFLAFMIDRLHHYIREL 116 (308)
Q Consensus 94 YISGFsLFL~LVI~Rl~sLI~eL 116 (308)
.+.|+..++. .|+.++.+|+.-
T Consensus 581 ilegl~~a~~-~iD~vI~iIr~s 602 (692)
T 2xcs_B 581 ILEGLRIALD-HIDEIISTIRES 602 (692)
T ss_dssp HHHHHHHHHH-THHHHHHHHHTC
T ss_pred HHhhHHHHHH-hHHHHHHHHHhC
Confidence 8889876665 688888888753
No 120
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=46.28 E-value=56 Score=25.25 Aligned_cols=36 Identities=28% Similarity=0.171 Sum_probs=21.6
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 171 el~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
.|..+=.+.+.|.++.+.+..|-..|.++++.|+.-
T Consensus 40 AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 40 ALYEALKENEKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455666666666666666666666666543
No 121
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=45.55 E-value=79 Score=24.79 Aligned_cols=33 Identities=24% Similarity=0.157 Sum_probs=24.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccc
Q 021727 180 VALRKQSEGFLFEYDRLLEENQNLRNQLQSLDW 212 (308)
Q Consensus 180 eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~ 212 (308)
.++..|.......-|.|..+..+++..++..+.
T Consensus 58 ~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 58 ASLEPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556666777888899998899888875543
No 122
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=45.13 E-value=75 Score=22.32 Aligned_cols=14 Identities=14% Similarity=-0.057 Sum_probs=5.3
Q ss_pred HHHHHHHhhHHHHH
Q 021727 180 VALRKQSEGFLFEY 193 (308)
Q Consensus 180 eaLKKQae~L~kEY 193 (308)
..|+++.+.|..|.
T Consensus 39 ~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 39 GQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 123
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=44.94 E-value=61 Score=32.47 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=15.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 021727 94 TLMGASLFLAFMIDRLHHYIR 114 (308)
Q Consensus 94 YISGFsLFL~LVI~Rl~sLI~ 114 (308)
.+.||..++. .|+.++.+|+
T Consensus 374 ilegl~~a~~-~id~vI~iIr 393 (496)
T 2nov_A 374 IVEGLIRVIS-ILDEVIALIR 393 (496)
T ss_dssp HHHHHHHHHH-SHHHHHHHHT
T ss_pred HHHHHHHHHH-HHhhHHHHHH
Confidence 7889888764 6788887764
No 124
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=44.46 E-value=85 Score=22.49 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=16.2
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 021727 144 IKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALR 183 (308)
Q Consensus 144 ~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLK 183 (308)
.-++.|++..|++|.++|++-+++- .+|.+++|.+-
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeE----qkARk~LE~~v 47 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEE----QRARKDLEKLV 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 3344444444444554444444422 23445555443
No 125
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=44.33 E-value=90 Score=24.78 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhHhh
Q 021727 191 FEYDRLLEENQNLRNQLQS 209 (308)
Q Consensus 191 kEYDRL~eE~~kLq~~l~~ 209 (308)
++-+.|..|.++|+..+..
T Consensus 75 ~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 75 EDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566677777777776653
No 126
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.90 E-value=29 Score=33.73 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727 177 TNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 177 ~d~eaLKKQae~L~kEYDRL~eE~~kLq~ 205 (308)
.+.+-++.|.+.+.+||.++.+|...+|.
T Consensus 63 ~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 63 LQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34567888888999999999888877764
No 127
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=43.73 E-value=47 Score=20.95 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 021727 157 KLKDLESELETKSKEA 172 (308)
Q Consensus 157 evekLk~eLk~k~kel 172 (308)
|+..||+|+...++|+
T Consensus 3 eiaalkqeiaalkkei 18 (33)
T 4dzn_A 3 EIAALKQEIAALKKEI 18 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4555565555555543
No 128
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=42.59 E-value=56 Score=24.80 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=6.9
Q ss_pred HHHHHhhHHHHHHHHHH
Q 021727 182 LRKQSEGFLFEYDRLLE 198 (308)
Q Consensus 182 LKKQae~L~kEYDRL~e 198 (308)
+|-..+-=-..|.+|++
T Consensus 64 vK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 64 IKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHc
Confidence 33333333344544443
No 129
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=42.25 E-value=53 Score=24.34 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=16.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+..|+.+.+.+..|.++|..+++.|+.++.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555556666666655554
No 130
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=42.21 E-value=1.7e+02 Score=25.27 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhHhhccc
Q 021727 196 LLEENQNLRNQLQSLDW 212 (308)
Q Consensus 196 L~eE~~kLq~~l~~~d~ 212 (308)
+..|+.+|++.+..-+|
T Consensus 116 ~~~e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 116 VEGERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344445555554444
No 131
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=42.07 E-value=41 Score=30.04 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=23.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 177 TNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 177 ~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
..++.|++|++.+...|-|+..|.++.++...
T Consensus 66 ~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~ 97 (213)
T 4ani_A 66 AQIAELEAKLSEMEHRYLRLYADFENFRRRTR 97 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777778888888887776655
No 132
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=41.25 E-value=75 Score=22.77 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=19.4
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 021727 145 KALEDQMTTLKLKLKDLESELETKSKEAN 173 (308)
Q Consensus 145 ~~~~~e~~~l~~evekLk~eLk~k~kel~ 173 (308)
+.+.|.+=.++.++.+|+++.+...+-++
T Consensus 6 KSlVDtVYaLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 6 KSLVDTVYALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777788878777776665443
No 133
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=41.24 E-value=1.6e+02 Score=29.82 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 021727 188 GFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 188 ~L~kEYDRL~eE~~kLq~~ 206 (308)
|++.+-+.|..|.+.|+.+
T Consensus 564 g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 564 GFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4445555555555556555
No 134
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=40.99 E-value=86 Score=21.59 Aligned_cols=29 Identities=7% Similarity=0.171 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 021727 157 KLKDLESELETKSKEANAAETNAVALRKQ 185 (308)
Q Consensus 157 evekLk~eLk~k~kel~kae~d~eaLKKQ 185 (308)
+.++++..+.....++.+...++..++.|
T Consensus 27 ~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 27 EFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444
No 135
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=40.95 E-value=58 Score=29.11 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=24.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHH
Q 021727 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEEN 200 (308)
Q Consensus 150 e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~ 200 (308)
||..|-++++.|+.|+..++++ ..++..|-.+++.+..-+++|..+.
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeE----n~eLkeLae~~q~la~vi~~l~~~~ 162 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKE----NKELAEVAEHVQYMAELIERLNGEP 162 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4444444444444444433332 2335556667777777777777654
No 136
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=40.92 E-value=76 Score=27.92 Aligned_cols=40 Identities=15% Similarity=0.321 Sum_probs=32.3
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhc
Q 021727 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSL 210 (308)
Q Consensus 171 el~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~ 210 (308)
.|+.++.=...||+..+.|..|+-.+.++...++.++...
T Consensus 25 rL~~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~ 64 (217)
T 3aon_A 25 QLTTATRGHKLLKDKQDELMRQFILLIRKNNELRQAIEKE 64 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556788999999999999999999999888887743
No 137
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=39.96 E-value=1.2e+02 Score=22.98 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=15.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 177 TNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 177 ~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
.+...|..|......-.++|......|..++.
T Consensus 49 ~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~ 80 (89)
T 3bas_A 49 EQKNDLFGSMKQLEDKVEELLSKNYHLENEVA 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444445544445555555555555544443
No 138
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=39.79 E-value=57 Score=25.93 Aligned_cols=32 Identities=38% Similarity=0.342 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhh
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~ 209 (308)
++..+++..+.|..|=|+|.++.+.|.-++..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777888888888888777754
No 139
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=39.71 E-value=36 Score=26.31 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhHHHHHHHHH
Q 021727 178 NAVALRKQSEGFLFEYDRLL 197 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~ 197 (308)
+...|+.|.+.|.+|.+.|-
T Consensus 51 EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 51 ENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666665554
No 140
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=39.64 E-value=1.4e+02 Score=29.69 Aligned_cols=28 Identities=29% Similarity=0.280 Sum_probs=15.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 179 AVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
...+++|.+.+..+...+.++.+.+--.
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~~ 140 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLMLN 140 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666665555544333
No 141
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=39.60 E-value=1.8e+02 Score=24.93 Aligned_cols=58 Identities=14% Similarity=0.074 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhcccc
Q 021727 156 LKLKDLESELETKSKEANAA----ETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWR 213 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~ka----e~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~ 213 (308)
.+...|..++..+..|+... .-|-++++++++....--..+.++.-+.+.+++..+.+
T Consensus 85 ~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~KeGip 146 (175)
T 3lay_A 85 TQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGIP 146 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34445555555555555433 23555666666555555666677777777777655554
No 142
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=38.82 E-value=1.4e+02 Score=27.14 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=6.6
Q ss_pred HHHHHHHHHhhHHHHH
Q 021727 178 NAVALRKQSEGFLFEY 193 (308)
Q Consensus 178 d~eaLKKQae~L~kEY 193 (308)
+++.|+.+..-...|+
T Consensus 67 ~~eelr~kL~p~~~el 82 (273)
T 3s84_A 67 QAEQLRRQLTPYAQRM 82 (273)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 143
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=38.51 E-value=1.4e+02 Score=23.16 Aligned_cols=27 Identities=7% Similarity=0.117 Sum_probs=21.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 180 VALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 180 eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
-.-+.|..+|.+.+-.++.+|+..|..
T Consensus 91 Rir~~q~~~L~~kf~e~m~~y~~~q~~ 117 (127)
T 1ez3_A 91 RIRKTQHSTLSRKFVEVMSEYNATQSD 117 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888888888888888876543
No 144
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=37.79 E-value=1.1e+02 Score=23.01 Aligned_cols=33 Identities=18% Similarity=0.061 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 176 ETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 176 e~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+.-++.|-...-..+++-|+|......|.+++.
T Consensus 27 E~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 27 EQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666666666666666666666654
No 145
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=37.79 E-value=98 Score=21.30 Aligned_cols=27 Identities=11% Similarity=0.210 Sum_probs=10.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 180 VALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 180 eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
+.++.+..++..+-....++-.+++.+
T Consensus 29 ~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 29 LKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444443
No 146
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=37.67 E-value=1.3e+02 Score=22.81 Aligned_cols=55 Identities=25% Similarity=0.323 Sum_probs=34.6
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHH
Q 021727 144 IKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLE 198 (308)
Q Consensus 144 ~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~e 198 (308)
..+....|..|.+.|..|+..++....+-...+.++..+-.+..+=--|-..|-+
T Consensus 15 lq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRq 69 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELRE 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444556677778888888888877766666666666666655554444433333
No 147
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=37.58 E-value=31 Score=28.23 Aligned_cols=14 Identities=21% Similarity=0.076 Sum_probs=6.1
Q ss_pred HHHHHHHHHhhHHH
Q 021727 178 NAVALRKQSEGFLF 191 (308)
Q Consensus 178 d~eaLKKQae~L~k 191 (308)
.++.|+++.+++..
T Consensus 24 ~~~~l~~~l~~~~~ 37 (182)
T 3kqg_A 24 KIRALQGSLENMSK 37 (182)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 148
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=37.27 E-value=1.2e+02 Score=22.79 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=8.7
Q ss_pred HhHHHhHHHHHHHHHHHHHH
Q 021727 146 ALEDQMTTLKLKLKDLESEL 165 (308)
Q Consensus 146 ~~~~e~~~l~~evekLk~eL 165 (308)
.+...|+.+..+++.|+.++
T Consensus 26 ~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 149
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=37.24 E-value=1e+02 Score=21.54 Aligned_cols=8 Identities=25% Similarity=0.081 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 021727 189 FLFEYDRL 196 (308)
Q Consensus 189 L~kEYDRL 196 (308)
|..+...|
T Consensus 41 L~~~i~~L 48 (61)
T 1t2k_D 41 LQSEVTLL 48 (61)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 150
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=37.05 E-value=1.1e+02 Score=21.54 Aligned_cols=10 Identities=0% Similarity=0.146 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 021727 157 KLKDLESELE 166 (308)
Q Consensus 157 evekLk~eLk 166 (308)
++..|..++.
T Consensus 12 ~V~~L~~kVd 21 (52)
T 1jcd_A 12 DAQTANAKAD 21 (52)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 151
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=36.87 E-value=51 Score=19.95 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 021727 156 LKLKDLESELETKS 169 (308)
Q Consensus 156 ~evekLk~eLk~k~ 169 (308)
.|+.+|+.|+...+
T Consensus 7 devgelkgevralk 20 (27)
T 3v86_A 7 DEVGELKGEVRALK 20 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHH
Confidence 34444444444333
No 152
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=36.83 E-value=85 Score=26.58 Aligned_cols=56 Identities=23% Similarity=0.334 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHhhHHHHH-HHHHHHHHHHHHhHhh
Q 021727 154 LKLKLKDLESELETKSKEANAA-ETNAVALRKQSEGFLFEY-DRLLEENQNLRNQLQS 209 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~ka-e~d~eaLKKQae~L~kEY-DRL~eE~~kLq~~l~~ 209 (308)
+..++++++..++..-.++... ..+.+.+|.+.+-...+| .++..+.+.|+.++..
T Consensus 104 L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL~~~~~~~~eeLr~kL~p 161 (165)
T 1gs9_A 104 LGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAV 161 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 3445566666666666655433 446778888888887777 4555566778887763
No 153
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=36.13 E-value=1.1e+02 Score=22.58 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhcccc
Q 021727 188 GFLFEYDRLLEENQNLRNQLQSLDWR 213 (308)
Q Consensus 188 ~L~kEYDRL~eE~~kLq~~l~~~d~~ 213 (308)
-|.+-+|.|.+|++++.++++++.-+
T Consensus 36 KL~Rk~DKl~~ele~l~~~l~~~~~~ 61 (65)
T 3sja_C 36 KNNRKLDSLDKEINNLKDEIQSENHH 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccc
Confidence 46777889999999988888876544
No 154
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=35.73 E-value=77 Score=25.46 Aligned_cols=15 Identities=7% Similarity=0.036 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhHHHH
Q 021727 178 NAVALRKQSEGFLFE 192 (308)
Q Consensus 178 d~eaLKKQae~L~kE 192 (308)
++..||.+.+++.+|
T Consensus 26 ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 26 EIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456677777777665
No 155
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=35.09 E-value=61 Score=28.03 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=15.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727 181 ALRKQSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 181 aLKKQae~L~kEYDRL~eE~~kLq~ 205 (308)
.+-+|.....++||+|-++|.+...
T Consensus 21 e~h~qy~~ks~~yd~l~e~y~r~sq 45 (170)
T 3l4q_C 21 VYHQQYQDKSREYDQLYEEYTRTSQ 45 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3445555666777777777765443
No 156
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=35.08 E-value=1.4e+02 Score=22.31 Aligned_cols=7 Identities=43% Similarity=0.752 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 021727 191 FEYDRLL 197 (308)
Q Consensus 191 kEYDRL~ 197 (308)
..|.+|+
T Consensus 71 atYRkLL 77 (84)
T 1gk4_A 71 ATYRKLL 77 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344443
No 157
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=35.00 E-value=1.7e+02 Score=23.17 Aligned_cols=17 Identities=12% Similarity=0.135 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021727 111 HYIRELRIRRKTMEAIK 127 (308)
Q Consensus 111 sLI~eLa~le~~~ealk 127 (308)
.+|++.+....++...+
T Consensus 5 ~LLRK~aE~~KqL~~~~ 21 (107)
T 2no2_A 5 DLLRKNAEVTKQVSMAR 21 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 35555555555554443
No 158
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*
Probab=34.84 E-value=1.1e+02 Score=27.17 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=34.2
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccccc
Q 021727 170 KEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRL 214 (308)
Q Consensus 170 kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d~~~ 214 (308)
+.|+.++.=...||+..+.|..|+..+.++...++.++...=+..
T Consensus 16 ~rL~~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a 60 (223)
T 3a5c_G 16 GQLRLAQKGVDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEA 60 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667899999999999999999999999999988655544
No 159
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=33.88 E-value=86 Score=23.48 Aligned_cols=13 Identities=23% Similarity=0.279 Sum_probs=6.9
Q ss_pred HHHHHHHHHhccc
Q 021727 119 RRKTMEAIKNQSR 131 (308)
Q Consensus 119 le~~~ealkKQa~ 131 (308)
+.....++....-
T Consensus 16 lk~~f~~Lr~~vP 28 (80)
T 1nlw_A 16 LRLSLEKLKGLVP 28 (80)
T ss_dssp HHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHcC
Confidence 4444556665544
No 160
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=33.80 E-value=2.2e+02 Score=24.16 Aligned_cols=24 Identities=4% Similarity=-0.011 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Q 021727 108 RLHHYIRELRIRRKTMEAIKNQSR 131 (308)
Q Consensus 108 Rl~sLI~eLa~le~~~ealkKQa~ 131 (308)
.++.-|.....+++++....++.+
T Consensus 7 KLI~Ain~qs~LeD~L~~~R~el~ 30 (154)
T 2ocy_A 7 QLIESVDKQSHLEEQLNKSLKTIA 30 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHH
Confidence 456666677777777766666544
No 161
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=33.70 E-value=1e+02 Score=28.69 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHhhHHHHH-HHHHHHHHHHHHhHhhc
Q 021727 154 LKLKLKDLESELETKSKEANA-AETNAVALRKQSEGFLFEY-DRLLEENQNLRNQLQSL 210 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~k-ae~d~eaLKKQae~L~kEY-DRL~eE~~kLq~~l~~~ 210 (308)
+..++++++.+|+-...++.. ...+++.++.+..-...|| +++...-+.|+.++.+-
T Consensus 112 L~~dlEelR~~L~Py~~el~~~l~~~~eelr~kL~Py~~EL~~~~~~~~eeLr~~L~py 170 (307)
T 2l7b_A 112 LGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVY 170 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhH
Confidence 445667777777777766643 3568889999999998888 45555667788888743
No 162
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=33.59 E-value=1.6e+02 Score=23.99 Aligned_cols=16 Identities=19% Similarity=0.221 Sum_probs=10.2
Q ss_pred HhhHHHHHHHHHHHHH
Q 021727 186 SEGFLFEYDRLLEENQ 201 (308)
Q Consensus 186 ae~L~kEYDRL~eE~~ 201 (308)
.+.+.+.||.++.|.+
T Consensus 70 ~ae~k~KYD~~lqe~e 85 (115)
T 3vem_A 70 MAEVQAEFRRKFHEVE 85 (115)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455566777777665
No 163
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=33.02 E-value=1.9e+02 Score=26.13 Aligned_cols=12 Identities=17% Similarity=0.401 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 021727 115 ELRIRRKTMEAI 126 (308)
Q Consensus 115 eLa~le~~~eal 126 (308)
++...+++++.+
T Consensus 71 ~l~~~~a~l~~~ 82 (369)
T 4dk0_A 71 TLNTRKAALASY 82 (369)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333334433333
No 164
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=32.95 E-value=1.2e+02 Score=28.55 Aligned_cols=79 Identities=8% Similarity=0.041 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhcc--ccccccCccceeeccccccc
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLD--WRLSHSDFRTVYWNAEKTAS 231 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d--~~~s~~~~k~~~~~~~~~~~ 231 (308)
+.+++++|++++++.+.+++.. .+-+-.++|.+++++..+++..+....+...+..+ ...+.. +|.-...|+-
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lAga----l~~~~~~~~~ 326 (426)
T 1lrz_A 252 LNEERDILNKDLNKALKDIEKR-PENKKAHNKRDNLQQQLDANEQKIEEGKRLQEEHGNELPISAG----FFFINPFEVV 326 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEE----EEEECSSCEE
T ss_pred HHHHHHHHHHHHHHHHHHhhhC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEE----EEEEECCEEE
Confidence 4445555555555555444221 11233445555555555555444443333222222 444432 3333444444
Q ss_pred cccchh
Q 021727 232 STYCAA 237 (308)
Q Consensus 232 ~~~~~~ 237 (308)
.-|.++
T Consensus 327 y~y~gs 332 (426)
T 1lrz_A 327 YYAGGT 332 (426)
T ss_dssp EEEEEE
T ss_pred EEecCc
Confidence 445554
No 165
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=32.48 E-value=59 Score=25.74 Aligned_cols=41 Identities=12% Similarity=0.226 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 021727 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQN 202 (308)
Q Consensus 158 vekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~k 202 (308)
+++|+.++..++.++. .+.-|+.|++=....|..=-...++
T Consensus 40 ideLKe~i~q~~~~~E----~i~vL~aQ~~iY~~DF~aERaaREk 80 (96)
T 3fx0_A 40 IDKLKEEAEQHKIVME----TVPVLKAQADIYKADFQAERQAREK 80 (96)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443322 3677888888777777544433333
No 166
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=32.29 E-value=58 Score=31.51 Aligned_cols=31 Identities=16% Similarity=0.132 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 021727 177 TNAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (308)
Q Consensus 177 ~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l 207 (308)
++...+++|.+.+..+...+.++.+.+.-.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 105 (425)
T 2dq3_A 75 NRVKELKEEIDRLEEELRKVEEELKNTLLWI 105 (425)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455566666666666666665555544443
No 167
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=32.27 E-value=1.6e+02 Score=26.47 Aligned_cols=51 Identities=12% Similarity=0.140 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq 204 (308)
+.....++|.++..++.+|.+.+.+..++.+|.+.-...--.+-+-|.++-
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~ 219 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHL 219 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 456788999999999999999999999999999998888888888887754
No 168
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=32.16 E-value=1.6e+02 Score=22.13 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq 204 (308)
.|+..|+..+.-+.+ |.|-|--..-+++-|-+-|.+..+++|
T Consensus 32 ~eI~~L~e~i~lk~k-------d~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 32 QEIRRLKEVIALKNK-------NTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcc-------cHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 344445544444444 455555555566666666666655555
No 169
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=31.45 E-value=1.3e+02 Score=22.94 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=11.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 180 VALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 180 eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
+.+.+..+.+.+.++.+.++.++++..
T Consensus 80 e~ie~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 80 ETLEVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 170
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=30.98 E-value=91 Score=30.09 Aligned_cols=11 Identities=55% Similarity=0.709 Sum_probs=5.9
Q ss_pred hhhhhhhhhhc
Q 021727 239 VLDFELLTKLS 249 (308)
Q Consensus 239 ~~~~~~~~~~~ 249 (308)
.+||+..++.|
T Consensus 150 l~d~~~~~~~~ 160 (425)
T 2dq3_A 150 ILDFKRGAKLS 160 (425)
T ss_dssp CEEHHHHHHHH
T ss_pred eEEeccccccc
Confidence 35666655443
No 171
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=30.84 E-value=63 Score=24.23 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 021727 154 LKLKLKDLESELETKSKEANAAETNAVALR 183 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel~kae~d~eaLK 183 (308)
|..+++.|..|.++..+.+++++.++..++
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666665555555555555555544
No 172
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=30.77 E-value=3.5e+02 Score=26.24 Aligned_cols=29 Identities=7% Similarity=-0.058 Sum_probs=11.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 021727 179 AVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~eE~~kLq~~l 207 (308)
+.....++..|+.-++.+....+.|+.++
T Consensus 100 ~~~~~~~i~~l~~~~~~~~~~i~~l~~~i 128 (409)
T 1m1j_C 100 ILAHENTIQQLTDMHIMNSNKITQLKQKI 128 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333444444444444444444444333
No 173
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=30.44 E-value=2.7e+02 Score=24.25 Aligned_cols=94 Identities=11% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 021727 105 MIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRK 184 (308)
Q Consensus 105 VI~Rl~sLI~eLa~le~~~ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKK 184 (308)
+-..+......+.+.+..++..-++++.+.. .......+...-..++++++..+..+..++.+++++-..--.
T Consensus 121 ~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~-------~~~~a~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~ 193 (301)
T 2efk_A 121 AQQQLENGFKQLENSKRKFERDCREAEKAAQ-------TAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQ 193 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhH-HHHHHHHHHH-HHHHHH
Q 021727 185 QSEGF-LFEYDRLLEE-NQNLRN 205 (308)
Q Consensus 185 Qae~L-~kEYDRL~eE-~~kLq~ 205 (308)
.++.. ...|...+.+ .+.+|.
T Consensus 194 ~~n~~~~~~~~~~~p~~~~~lQ~ 216 (301)
T 2efk_A 194 RFNRDQAHFYFSQMPQIFDKLQD 216 (301)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 174
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=30.28 E-value=2.3e+02 Score=24.74 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 021727 192 EYDRLLEENQNLR 204 (308)
Q Consensus 192 EYDRL~eE~~kLq 204 (308)
.|+..+.|.+..+
T Consensus 145 ~Y~~~~~e~e~a~ 157 (305)
T 2efl_A 145 RFERDCKEADRAQ 157 (305)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 175
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.23 E-value=1.3e+02 Score=30.43 Aligned_cols=69 Identities=20% Similarity=0.167 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH-HHHhHhhccccccccCccceeecccc
Q 021727 160 DLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQN-LRNQLQSLDWRLSHSDFRTVYWNAEK 228 (308)
Q Consensus 160 kLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~k-Lq~~l~~~d~~~s~~~~k~~~~~~~~ 228 (308)
+|+..+.-.+.++...-+.+.+|++.++++..+.-||--+..- ++.=-..=-+.+.+.=+.+-|-|-+|
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QK 183 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQK 183 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHH
Confidence 4444444444444333344555555555555554444333221 11111123344455555555555444
No 176
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=30.15 E-value=66 Score=25.08 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=13.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNL 203 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kL 203 (308)
+++.|+.+...+.+|-|.+...++.|
T Consensus 63 e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 63 QVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555555443
No 177
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=29.95 E-value=1.8e+02 Score=21.88 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 021727 191 FEYDRLLEENQNLRNQ 206 (308)
Q Consensus 191 kEYDRL~eE~~kLq~~ 206 (308)
+.++.+.++.++++..
T Consensus 86 ~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 86 RQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444433
No 178
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=29.70 E-value=1.4e+02 Score=26.68 Aligned_cols=38 Identities=29% Similarity=0.226 Sum_probs=22.3
Q ss_pred HHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727 168 KSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 168 k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~ 205 (308)
+.++|..+=.+.+.|.++.+.+..|-.+|.+|++.|+.
T Consensus 106 RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 106 RRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445666666666666666666666665543
No 179
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=29.69 E-value=52 Score=30.61 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=9.6
Q ss_pred HHhHHHhHHHHHHHHHHHHHHH
Q 021727 145 KALEDQMTTLKLKLKDLESELE 166 (308)
Q Consensus 145 ~~~~~e~~~l~~evekLk~eLk 166 (308)
+.+.++++.+.+|+++|+++.+
T Consensus 188 e~L~~~~~~L~eEi~~Le~~~e 209 (315)
T 2ve7_A 188 ESLEAKNRALNEQIARLEQERS 209 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 180
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=29.09 E-value=1.1e+02 Score=23.51 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 021727 158 LKDLESELETKSK 170 (308)
Q Consensus 158 vekLk~eLk~k~k 170 (308)
+++|..+++.++.
T Consensus 48 N~~Lh~~ie~l~e 60 (83)
T 1uii_A 48 NEKLHKEIEQKDN 60 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 181
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=29.01 E-value=68 Score=22.32 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhHHHHHHHHH
Q 021727 178 NAVALRKQSEGFLFEYDRLL 197 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~ 197 (308)
++.+|..-.+.|..||+++.
T Consensus 28 EV~~L~~NL~EL~~E~~~~~ 47 (48)
T 3v1a_A 28 EVRTLQENLHQLMHEYFQQS 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 67888888888888998764
No 182
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=28.67 E-value=39 Score=29.94 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=9.3
Q ss_pred HHHhHHHHHHH-HHHHHHHHHHH
Q 021727 94 TLMGASLFLAF-MIDRLHHYIRE 115 (308)
Q Consensus 94 YISGFsLFL~L-VI~Rl~sLI~e 115 (308)
|+.+|.++.++ +++=..++|.+
T Consensus 215 ~f~~~~~i~~~~~lnl~~aii~~ 237 (285)
T 3rvy_A 215 FFIPFIFVVTFVMINLVVAICVD 237 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554432 33333344433
No 183
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=28.18 E-value=1.4e+02 Score=28.83 Aligned_cols=16 Identities=25% Similarity=0.080 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 021727 155 KLKLKDLESELETKSK 170 (308)
Q Consensus 155 ~~evekLk~eLk~k~k 170 (308)
..++++++.+++...+
T Consensus 23 ~~~~~~~~~~~~~~~~ 38 (412)
T 3u06_A 23 LRCNEQQAAELETCKE 38 (412)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444443333
No 184
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=28.10 E-value=1.5e+02 Score=22.79 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 021727 157 KLKDLESELETKSKEA 172 (308)
Q Consensus 157 evekLk~eLk~k~kel 172 (308)
|+++|..+++.++.++
T Consensus 39 EN~~Lh~~ie~~~eEi 54 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEI 54 (83)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 185
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=27.89 E-value=1.3e+02 Score=29.02 Aligned_cols=28 Identities=25% Similarity=0.070 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhHHH------HHHHHHHHHHHHHH
Q 021727 178 NAVALRKQSEGFLF------EYDRLLEENQNLRN 205 (308)
Q Consensus 178 d~eaLKKQae~L~k------EYDRL~eE~~kLq~ 205 (308)
+++.+..|...+.+ |++.|.+++..|++
T Consensus 208 ~l~~l~~ql~ei~~~~l~~~E~e~L~~~~~~L~~ 241 (517)
T 4ad8_A 208 QIDLLAFQVQEISEVSPDPGEEEGLNTELSRLSN 241 (517)
T ss_dssp HHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 34455555555555 55555555555543
No 186
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=27.50 E-value=1.2e+02 Score=22.92 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=12.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 181 ALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 181 aLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
.|+.+...+..+-+.|..+++.|+.+++
T Consensus 56 ~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 56 SVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444445555555554443
No 187
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=27.43 E-value=2.1e+02 Score=22.58 Aligned_cols=28 Identities=7% Similarity=-0.012 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLRN 205 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq~ 205 (308)
.++.+.++.+.+...++.+.++.++++.
T Consensus 103 ~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 103 TLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555555543
No 188
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=27.21 E-value=1.4e+02 Score=22.07 Aligned_cols=27 Identities=26% Similarity=0.122 Sum_probs=11.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 180 VALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 180 eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
..|..|+..+..+.+.+..|++.|+.+
T Consensus 32 ~~LE~~v~~le~~~~~l~~en~~Lr~~ 58 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLENDQLRQK 58 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444433
No 189
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=27.20 E-value=43 Score=22.50 Aligned_cols=18 Identities=33% Similarity=0.606 Sum_probs=15.8
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 021727 93 ATLMGASLFLAFMIDRLH 110 (308)
Q Consensus 93 aYISGFsLFL~LVI~Rl~ 110 (308)
+=+-|-+||.+++|+|+.
T Consensus 21 aGiIG~IllI~y~I~rl~ 38 (40)
T 1afo_A 21 AGVIGTILLISYGIRRLI 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 478899999999999973
No 190
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=27.07 E-value=2.1e+02 Score=22.36 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021727 154 LKLKLKDLESELETKSKEA 172 (308)
Q Consensus 154 l~~evekLk~eLk~k~kel 172 (308)
++-++++|..|++...+++
T Consensus 54 L~Rk~DKl~~ele~l~~~l 72 (93)
T 3sjb_C 54 NNRKLDSLDKEINNLKDEI 72 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555444443
No 191
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=26.89 E-value=1.6e+02 Score=22.13 Aligned_cols=20 Identities=10% Similarity=0.233 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhHHHHHHHHH
Q 021727 178 NAVALRKQSEGFLFEYDRLL 197 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~ 197 (308)
+++.|.+|.+.+..+.+.+.
T Consensus 80 ~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 80 REKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555544443
No 192
>3vjf_A WA20; protein design, de novo protein, binary patterned design, FO bundle, rudimentary enzymatic activitie; 2.20A {Synthetic construct}
Probab=26.89 E-value=2.1e+02 Score=21.88 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHH
Q 021727 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEEN 200 (308)
Q Consensus 157 evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~ 200 (308)
-++..|.-+....+...+-+-++-.|-.|.|++-.||...+.-+
T Consensus 8 lvehikellqqlnknwhrhqgnlhdmnqqmeqlfqefqhfmqgn 51 (102)
T 3vjf_A 8 LVEHIKELLQQLNKNWHRHQGNLHDMNQQMEQLFQEFQHFMQGN 51 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHHhcC
Confidence 34445555566667777778889999999999999998777654
No 193
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=26.82 E-value=33 Score=30.98 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhHhh
Q 021727 192 EYDRLLEENQNLRNQLQS 209 (308)
Q Consensus 192 EYDRL~eE~~kLq~~l~~ 209 (308)
+++.|..|+++|++.+..
T Consensus 44 ~~~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 44 EVADLKKENKDLKESLDI 61 (255)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 355667777777777663
No 194
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=26.72 E-value=2e+02 Score=21.80 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhHHHHHHHHH
Q 021727 178 NAVALRKQSEGFLFEYDRLL 197 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~ 197 (308)
+++.|+++-..+-.+-|+.+
T Consensus 49 ~l~ql~~rQrd~Y~dLD~Rl 68 (83)
T 2xdj_A 49 QLNQVVERQKQILLQIDSLS 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666555555555444
No 195
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=26.58 E-value=2.6e+02 Score=22.79 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 021727 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQN 202 (308)
Q Consensus 158 vekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~k 202 (308)
..+++.++.++..++.. ..+..--|.|.++|.+.|+.+..+.++
T Consensus 46 ~~~m~~~i~ek~~~i~~-~~~~~~yK~eY~~L~KkYk~~~~~Ld~ 89 (119)
T 2avr_X 46 NEQVYNELSQRAQRLQA-EANTRFYKSQYQELASKYEDALKKLEA 89 (119)
T ss_dssp HHHHHHHHHHHHHHHHH-HTTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666555533 334455667777777777666655543
No 196
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=26.56 E-value=46 Score=30.12 Aligned_cols=9 Identities=33% Similarity=0.468 Sum_probs=3.6
Q ss_pred HHhHHHHHH
Q 021727 95 LMGASLFLA 103 (308)
Q Consensus 95 ISGFsLFL~ 103 (308)
|||++=|+.
T Consensus 126 LSalINF~~ 134 (250)
T 2ve7_C 126 LSGIINFIH 134 (250)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444433
No 197
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=26.07 E-value=1.3e+02 Score=23.00 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 021727 158 LKDLESELETKSK 170 (308)
Q Consensus 158 vekLk~eLk~k~k 170 (308)
.++|-.+++.++.
T Consensus 36 N~~Lh~~ie~~~e 48 (79)
T 2zxx_A 36 NEKLHKEIEQKDS 48 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444443333
No 198
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=26.06 E-value=1.9e+02 Score=22.00 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=9.1
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 021727 149 DQMTTLKLKLKDLESELE 166 (308)
Q Consensus 149 ~e~~~l~~evekLk~eLk 166 (308)
+||..|-++++.++.++.
T Consensus 34 ~EN~~Lh~~ie~~~eEi~ 51 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIA 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555554
No 199
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=25.83 E-value=74 Score=27.17 Aligned_cols=36 Identities=19% Similarity=0.139 Sum_probs=24.1
Q ss_pred HHHHHHHhhHHHHHHHHHHH--HHHHHHhHhhcccccc
Q 021727 180 VALRKQSEGFLFEYDRLLEE--NQNLRNQLQSLDWRLS 215 (308)
Q Consensus 180 eaLKKQae~L~kEYDRL~eE--~~kLq~~l~~~d~~~s 215 (308)
++||+|.+.+-+-.|.|.++ ...|++-+...+...+
T Consensus 22 ~~lk~Q~~~lw~~rD~L~~~ls~~eLk~lL~~N~q~~~ 59 (160)
T 2riq_A 22 KALKAQNDLIWNIKDELKKVCSTNDLKELLIFNKQQVP 59 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHcCCCCC
Confidence 44788888888888877753 3456666666665544
No 200
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=25.74 E-value=1.7e+02 Score=20.36 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHH
Q 021727 156 LKLKDLESELETKSKEANAAETNAV 180 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~e 180 (308)
+.+++|-.-|+....+|.+.+.+++
T Consensus 23 ~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 23 ARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444433333333
No 201
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=25.74 E-value=1.4e+02 Score=20.44 Aligned_cols=12 Identities=25% Similarity=0.512 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 021727 160 DLESELETKSKE 171 (308)
Q Consensus 160 kLk~eLk~k~ke 171 (308)
+...|+.+.+.|
T Consensus 19 E~RkElqK~K~E 30 (45)
T 1use_A 19 EVKKELQKVKEE 30 (45)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 202
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=25.62 E-value=82 Score=23.60 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=8.3
Q ss_pred HHHHHHhhHHHHHHHHHHH
Q 021727 181 ALRKQSEGFLFEYDRLLEE 199 (308)
Q Consensus 181 aLKKQae~L~kEYDRL~eE 199 (308)
.|-.|.+..+.||-++.+|
T Consensus 15 el~~klk~~~ee~~~~~ee 33 (71)
T 1uix_A 15 ELNNKLKEAQEQLSRLKDE 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 203
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=25.61 E-value=2e+02 Score=28.50 Aligned_cols=7 Identities=14% Similarity=0.107 Sum_probs=3.7
Q ss_pred hhhhhhh
Q 021727 240 LDFELLT 246 (308)
Q Consensus 240 ~~~~~~~ 246 (308)
+||+..+
T Consensus 186 ~df~~~a 192 (484)
T 3lss_A 186 MDTSKAV 192 (484)
T ss_dssp EECSHHH
T ss_pred eeccccc
Confidence 4665544
No 204
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=25.60 E-value=75 Score=28.15 Aligned_cols=12 Identities=8% Similarity=-0.075 Sum_probs=4.9
Q ss_pred HHHHHHHHHhhH
Q 021727 178 NAVALRKQSEGF 189 (308)
Q Consensus 178 d~eaLKKQae~L 189 (308)
+..-|++|.|.+
T Consensus 154 ~~~~l~~qlE~~ 165 (213)
T 1ik9_A 154 DWNDVQGRFEKA 165 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 205
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=25.36 E-value=3.7e+02 Score=24.09 Aligned_cols=43 Identities=9% Similarity=0.078 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHH
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLE 198 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~e 198 (308)
.++++++..++....+..+++++....-..++....+|...+.
T Consensus 183 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~ 225 (337)
T 2x3v_A 183 EQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQYMEGME 225 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3556666666666666666666655555555555566655443
No 206
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=25.35 E-value=1.7e+02 Score=20.09 Aligned_cols=22 Identities=27% Similarity=0.199 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH
Q 021727 178 NAVALRKQSEGFLFEYDRLLEE 199 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE 199 (308)
|-+.|.|-..|+..|.-||-.|
T Consensus 25 deqnlekiianlrdeiarlene 46 (52)
T 3he5_B 25 DEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666665443
No 207
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=25.33 E-value=2.1e+02 Score=21.59 Aligned_cols=6 Identities=17% Similarity=0.401 Sum_probs=2.5
Q ss_pred HHhccc
Q 021727 126 IKNQSR 131 (308)
Q Consensus 126 lkKQa~ 131 (308)
++.|..
T Consensus 5 Lr~qi~ 10 (86)
T 3swk_A 5 LRRQVD 10 (86)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 208
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=25.30 E-value=47 Score=24.04 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021727 189 FLFEYDRLLEENQNLRN 205 (308)
Q Consensus 189 L~kEYDRL~eE~~kLq~ 205 (308)
...|-|+|.-+|+++..
T Consensus 34 ~SQeLD~LIn~Y~k~~~ 50 (62)
T 2bzb_A 34 FSRDLDKLINKFMNVKD 50 (62)
T ss_dssp HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 46677888888776553
No 209
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=25.18 E-value=2.1e+02 Score=21.29 Aligned_cols=46 Identities=28% Similarity=0.383 Sum_probs=27.3
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHH
Q 021727 147 LEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFE 192 (308)
Q Consensus 147 ~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kE 192 (308)
...+|..|.+.|..|+..++....+-...+.++..+-.+..+=--|
T Consensus 12 ~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~e 57 (72)
T 3cve_A 12 VEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFE 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3345556677777777777776665555555555555554444333
No 210
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=25.00 E-value=1.4e+02 Score=25.22 Aligned_cols=9 Identities=11% Similarity=0.139 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 021727 178 NAVALRKQS 186 (308)
Q Consensus 178 d~eaLKKQa 186 (308)
++++|+.|.
T Consensus 134 ~~e~Lr~~L 142 (185)
T 3r2p_A 134 KLHELQEKL 142 (185)
T ss_dssp HHTTTTTTS
T ss_pred hHHHHHHHH
Confidence 344444443
No 211
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=24.91 E-value=3.1e+02 Score=26.47 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHH
Q 021727 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLE 198 (308)
Q Consensus 156 ~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~e 198 (308)
+++++++..+++...++.+++++-...-..++....+|.+.+.
T Consensus 185 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~ 227 (486)
T 3haj_A 185 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENME 227 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666665555444445555555554443
No 212
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=24.58 E-value=2.7e+02 Score=22.30 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 021727 152 TTLKLKLKDLESELETKSKEANAAE 176 (308)
Q Consensus 152 ~~l~~evekLk~eLk~k~kel~kae 176 (308)
+++.+|+...+.+|.....+|+.|+
T Consensus 38 eeLQ~Ei~~~E~QL~iArQKLkdAe 62 (107)
T 2k48_A 38 QELQENITAHEQQLVTARQKLKDAE 62 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555554444444443
No 213
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=24.50 E-value=3.5e+02 Score=23.57 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHhc
Q 021727 102 LAFMIDRLHHYIREL--RIRRKTMEAIKNQ 129 (308)
Q Consensus 102 L~LVI~Rl~sLI~eL--a~le~~~ealkKQ 129 (308)
|.++|-+++.++.+. -.+...+++.+-|
T Consensus 54 LTLLLGnL~~IlG~~SlTqL~nrL~~wlsQ 83 (201)
T 3u0c_A 54 LTLLIGNLIQILGEKSLTALTNKITAWKSQ 83 (201)
T ss_dssp HHHHHHHHHHHHCSGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 566777888887543 3344455555433
No 214
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=23.48 E-value=1.9e+02 Score=26.64 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHH
Q 021727 192 EYDRLLEENQNLR 204 (308)
Q Consensus 192 EYDRL~eE~~kLq 204 (308)
-|+.+.+||++++
T Consensus 141 ~Y~~r~ee~ekak 153 (279)
T 3qwe_A 141 QYVQRSEDLRARS 153 (279)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 3777777777765
No 215
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=23.39 E-value=2.1e+02 Score=23.50 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021727 155 KLKLKDLESELETKSKEANA 174 (308)
Q Consensus 155 ~~evekLk~eLk~k~kel~k 174 (308)
+.|++.|...|......+..
T Consensus 9 K~Eiq~L~drLD~~~rKlaa 28 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQAD 28 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554433
No 216
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=23.25 E-value=76 Score=22.27 Aligned_cols=14 Identities=21% Similarity=0.544 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHh
Q 021727 193 YDRLLEENQNLRNQ 206 (308)
Q Consensus 193 YDRL~eE~~kLq~~ 206 (308)
|.+|.+|++.|+++
T Consensus 36 ~~~l~~e~~~L~~~ 49 (57)
T 2wuj_A 36 YEIVLRKKTELEAK 49 (57)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 217
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=23.12 E-value=2.9e+02 Score=22.06 Aligned_cols=42 Identities=10% Similarity=0.179 Sum_probs=31.6
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhcc
Q 021727 170 KEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLD 211 (308)
Q Consensus 170 kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~~~d 211 (308)
..++-.+..++....+...|..+...+-++.+.|+.+++..+
T Consensus 83 ~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 83 AKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445567788888888888888888888888888877544
No 218
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=22.77 E-value=1.6e+02 Score=21.05 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=13.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 021727 179 AVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~eE~~kLq~~l 207 (308)
++.|..|++.|..+-+.|..+.+.|+.++
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555444443
No 219
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=22.44 E-value=1.8e+02 Score=20.40 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=12.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHH
Q 021727 180 VALRKQSEGFLFEYDRLLEENQNL 203 (308)
Q Consensus 180 eaLKKQae~L~kEYDRL~eE~~kL 203 (308)
..+|...+....||..|++=.-.|
T Consensus 17 ~~~r~e~~~q~~eYq~LlniK~~L 40 (59)
T 1gk6_A 17 YHLENEVARLKKLVGDLLNVKMAL 40 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555566676666544333
No 220
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=22.43 E-value=1e+02 Score=26.83 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHh
Q 021727 193 YDRLLEENQNLRNQ 206 (308)
Q Consensus 193 YDRL~eE~~kLq~~ 206 (308)
|-|+..|.++.++.
T Consensus 62 ~lR~~Ae~eN~rkR 75 (197)
T 1dkg_A 62 ILRVKAEMENLRRR 75 (197)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 221
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=22.19 E-value=3e+02 Score=23.60 Aligned_cols=81 Identities=7% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 021727 124 EAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNL 203 (308)
Q Consensus 124 ealkKQa~~a~~~~~~~~~e~~~~~~e~~~l~~evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kL 203 (308)
..+..+.+........-.+......+.+....++.++..+.+++-.....++.+++....+..+...+.|+..+.|.+++
T Consensus 76 ~~~~~~~e~~a~~h~~~a~~l~~~~~~l~~~~~~~~~~rK~~~~~~~~~~~~~~~~~~~~~~l~Kak~~Y~~~c~e~e~~ 155 (276)
T 2v0o_A 76 DVFKTSTEKLANCHLDLVRKLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERL 155 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 021727 204 R 204 (308)
Q Consensus 204 q 204 (308)
+
T Consensus 156 ~ 156 (276)
T 2v0o_A 156 K 156 (276)
T ss_dssp H
T ss_pred H
No 222
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=22.15 E-value=1.2e+02 Score=22.42 Aligned_cols=10 Identities=20% Similarity=0.245 Sum_probs=4.6
Q ss_pred HHHHHHHHHh
Q 021727 178 NAVALRKQSE 187 (308)
Q Consensus 178 d~eaLKKQae 187 (308)
+.+.|+.|..
T Consensus 69 ~~~~L~~~l~ 78 (83)
T 1nkp_B 69 QNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444544443
No 223
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=22.08 E-value=3.7e+02 Score=23.10 Aligned_cols=31 Identities=6% Similarity=-0.136 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHh
Q 021727 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (308)
Q Consensus 178 d~eaLKKQae~L~kEYDRL~eE~~kLq~~l~ 208 (308)
+++..+.+.+..+.++.....+.+.++.+++
T Consensus 99 ~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~ 129 (277)
T 2f1m_A 99 EYDQALADAQQANAAVTAAKAAVETARINLA 129 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444444444444
No 224
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=21.87 E-value=65 Score=28.97 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=8.0
Q ss_pred HhHHHHHHHHHHHHHHH
Q 021727 150 QMTTLKLKLKDLESELE 166 (308)
Q Consensus 150 e~~~l~~evekLk~eLk 166 (308)
||+.|++|+.+|+.++.
T Consensus 27 eN~~Lk~e~~~l~~~~~ 43 (255)
T 2j5u_A 27 ENQHLKERLEELAQLES 43 (255)
T ss_dssp TTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555554444333
No 225
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=21.80 E-value=1.9e+02 Score=19.50 Aligned_cols=16 Identities=44% Similarity=0.532 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 021727 157 KLKDLESELETKSKEA 172 (308)
Q Consensus 157 evekLk~eLk~k~kel 172 (308)
|+..|+.|+...++++
T Consensus 21 elaaleselqalekkl 36 (48)
T 1g6u_A 21 ELAALESELQALEKKL 36 (48)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555555543
No 226
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=21.78 E-value=2.7e+02 Score=21.15 Aligned_cols=30 Identities=17% Similarity=0.116 Sum_probs=21.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhHhh
Q 021727 180 VALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (308)
Q Consensus 180 eaLKKQae~L~kEYDRL~eE~~kLq~~l~~ 209 (308)
+.|-++.+.|..|++-|..|...++...+.
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r 62 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLK 62 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 356678888888888888888776655443
No 227
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=21.44 E-value=6.3e+02 Score=25.50 Aligned_cols=49 Identities=14% Similarity=0.147 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 158 vekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
++..+.++++...||..+++++...+....-..+-|+.+.-+.+....+
T Consensus 316 ~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~ 364 (551)
T 2b5u_A 316 VEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKT 364 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhH
Confidence 3445555555555555666666666665555566777655555443333
No 228
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=21.09 E-value=2.4e+02 Score=20.47 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=23.0
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 171 el~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
+|..+|+.+.-|-|=-.+++.|..++..+.++||..
T Consensus 21 ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 21 ALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 444555566666666666777776666666666654
No 229
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=20.96 E-value=1.6e+02 Score=20.98 Aligned_cols=7 Identities=43% Similarity=0.743 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 021727 160 DLESELE 166 (308)
Q Consensus 160 kLk~eLk 166 (308)
+|+.+++
T Consensus 34 ~Le~~v~ 40 (63)
T 2dgc_A 34 QLEDKVE 40 (63)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 230
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=20.43 E-value=51 Score=20.98 Aligned_cols=15 Identities=7% Similarity=0.087 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhhhh
Q 021727 55 MLISSVYNIMMIQKR 69 (308)
Q Consensus 55 LFlDSirrm~K~~~~ 69 (308)
-|.|+++|++.|-..
T Consensus 9 aFadA~~RaRQIaAK 23 (31)
T 2kxh_B 9 AFKDALQRARQIAAK 23 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 389999999887543
No 231
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=20.42 E-value=4.2e+02 Score=22.94 Aligned_cols=38 Identities=11% Similarity=-0.023 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHH
Q 021727 164 ELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQ 201 (308)
Q Consensus 164 eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~ 201 (308)
+.....+++.+...+++..|+...+..+|+++.....+
T Consensus 124 ~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~ 161 (305)
T 2efl_A 124 DGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFE 161 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444555555555666666655554433
No 232
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=20.22 E-value=4.5e+02 Score=24.95 Aligned_cols=50 Identities=10% Similarity=0.072 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 021727 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (308)
Q Consensus 157 evekLk~eLk~k~kel~kae~d~eaLKKQae~L~kEYDRL~eE~~kLq~~ 206 (308)
..+.|+..+++....-.+.+.++.+-+...-.+.++.+.|..|...|++.
T Consensus 206 n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~ 255 (373)
T 3hhm_B 206 NYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKT 255 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 33444444443333222333334443444444566666666666555543
No 233
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=20.05 E-value=2.7e+02 Score=20.59 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=9.8
Q ss_pred HHHHHHHHhhHHHHHHHHHH
Q 021727 179 AVALRKQSEGFLFEYDRLLE 198 (308)
Q Consensus 179 ~eaLKKQae~L~kEYDRL~e 198 (308)
+-.+|-+.+-=-..|-+|++
T Consensus 38 LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 38 LLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34445444444455655553
Done!