BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>021730
MALVLPPLKFKLKPICCSSSPATSHFQCRPAVILPGLGNNSGDYQRLQLTLKDYGVPTVV
AEVSRFDWLRNAAGLVDPNYWRATLRPRPVLDWYFSRMNDAIQKAKEFTPGGKLSLIGHS
AGGWLARVYMEEFGSSDISLLLTLGTPHLPPPKGLPWVIDQTRGLLNYVEKQCSKAIYTP
ELKYVCIAGRYIQGARFFGNSNVDVDSTVAIDTDQPISEVATVDNKTISTATSTTFRARI
VGQGYKQVCGQADVWGDGVVPEVSAHLEGALNISLDGVYHSPVGSDDALRPWYGSPAVVE
KWIHHLLD

High Scoring Gene Products

Symbol, full name Information P value
AT5G17670 protein from Arabidopsis thaliana 4.1e-104

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  021730
        (308 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2175981 - symbol:AT5G17670 species:3702 "Arabi...  1031  4.1e-104  1


>TAIR|locus:2175981 [details] [associations]
            symbol:AT5G17670 species:3702 "Arabidopsis thaliana"
            [GO:0006505 "GPI anchor metabolic process" evidence=IEA]
            [GO:0006886 "intracellular protein transport" evidence=IEA]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0016788 "hydrolase
            activity, acting on ester bonds" evidence=IEA] [GO:0031227
            "intrinsic to endoplasmic reticulum membrane" evidence=IEA]
            [GO:0009941 "chloroplast envelope" evidence=IDA] InterPro:IPR012908
            Pfam:PF07819 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006886
            GO:GO:0009941 GO:GO:0031227 GO:GO:0016788 GO:GO:0006505
            EMBL:AB006706 eggNOG:COG1075 EMBL:AY062761 EMBL:AY128812
            IPI:IPI00519929 RefSeq:NP_197269.2 UniGene:At.27239
            ProteinModelPortal:Q9FN84 STRING:Q9FN84 PaxDb:Q9FN84 PRIDE:Q9FN84
            EnsemblPlants:AT5G17670.1 GeneID:831633 KEGG:ath:AT5G17670
            TAIR:At5g17670 HOGENOM:HOG000265856 InParanoid:Q9FN84 OMA:WGDGITP
            PhylomeDB:Q9FN84 ProtClustDB:CLSN2690171 ArrayExpress:Q9FN84
            Genevestigator:Q9FN84 Uniprot:Q9FN84
        Length = 309

 Score = 1031 (368.0 bits), Expect = 4.1e-104, P = 4.1e-104
 Identities = 196/293 (66%), Positives = 228/293 (77%)

Query:    18 SSSPATSHFQCRPAVILPGLGNNSGDYQRLQLTLKDYGVPTVVAEVSRFDWLRNAAGLVD 77
             SSS +  + + RPAVILPGLGNN+GDY++L++TL +YGVP VVA VSR DW RNAAGLVD
Sbjct:    22 SSSSSAGNVKYRPAVILPGLGNNTGDYKKLEVTLGEYGVPAVVAAVSRLDWFRNAAGLVD 81

Query:    78 PNYWRATLRPRPVLDWYFSRMNDAIQKAKEFTPGGKLSLIGHSAGGWLARVYMEEFGSSD 137
             P YWR TLRPRPVLDWY +R++DA+++A E   G  L LIGHSAGGWLARVYMEE+G+SD
Sbjct:    82 PAYWRGTLRPRPVLDWYLNRIDDAVREANELAQGQGLCLIGHSAGGWLARVYMEEYGNSD 141

Query:   138 ISXXXXXXXXXXXXXXXXXWVIDQTRGLLNYVEKQCSKAIYTPELKYVCIAGRYIQGARF 197
             IS                  VIDQTRGLL YVE+ C+KA+YTPELKYVCIAGRYI+GAR 
Sbjct:   142 ISLLLTLGTPHLPPPRGLPGVIDQTRGLLYYVEENCAKAVYTPELKYVCIAGRYIRGARL 201

Query:   198 FGNSNVDVDS--TVAIDTDQPISEVATVDNKTISTATSTTFRARIVGQGYKQVCGQADVW 255
               N++ D+DS  TV ID+ + ISE+A   NK      S TFRAR VGQGYKQVCG+ADVW
Sbjct:   202 VDNADADIDSDVTVGIDSGEGISELAIASNKK-----SGTFRARFVGQGYKQVCGRADVW 256

Query:   256 GDGVVPEVSAHLEGALNISLDGVYHSPVGSDDALRPWYGSPAVVEKWIHHLLD 308
             GDGVVPEVSAHLEGALN+S DGVYHSPVGSDD  RPWYGSP +V+ WIHHLL+
Sbjct:   257 GDGVVPEVSAHLEGALNVSFDGVYHSPVGSDDETRPWYGSPVIVKDWIHHLLE 309


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.428    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      308       281   0.00083  115 3  11 22  0.37    34
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  619 (66 KB)
  Total size of DFA:  225 KB (2123 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.43u 0.16s 20.59t   Elapsed:  00:00:01
  Total cpu time:  20.43u 0.16s 20.59t   Elapsed:  00:00:01
  Start:  Fri May 10 09:12:08 2013   End:  Fri May 10 09:12:09 2013

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